Query 012371
Match_columns 465
No_of_seqs 151 out of 1651
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 01:56:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012371.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012371hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03074 auxin influx permease 100.0 1.8E-72 3.8E-77 575.4 38.6 461 4-464 5-471 (473)
2 KOG1304 Amino acid transporter 100.0 2.6E-61 5.7E-66 473.6 33.3 389 32-444 40-449 (449)
3 KOG1303 Amino acid transporter 100.0 2.4E-57 5.1E-62 453.6 29.0 388 34-446 33-436 (437)
4 PTZ00206 amino acid transporte 100.0 5.6E-56 1.2E-60 455.9 33.1 381 37-445 58-465 (467)
5 PF01490 Aa_trans: Transmembra 100.0 5.8E-53 1.3E-57 430.3 -3.1 383 37-441 1-408 (409)
6 KOG1305 Amino acid transporter 100.0 4.8E-42 1E-46 341.9 22.9 378 36-447 3-408 (411)
7 KOG4303 Vesicular inhibitory a 100.0 8.7E-44 1.9E-48 329.7 4.9 391 34-450 112-520 (524)
8 COG0814 SdaC Amino acid permea 100.0 7.7E-31 1.7E-35 265.0 30.0 345 34-392 4-379 (415)
9 PRK10483 tryptophan permease; 99.9 1.9E-23 4.1E-28 208.0 30.7 340 36-396 8-373 (414)
10 PRK09664 tryptophan permease T 99.9 2.3E-23 5E-28 207.1 31.2 342 34-396 4-374 (415)
11 PF03222 Trp_Tyr_perm: Tryptop 99.9 1.2E-22 2.5E-27 204.2 31.7 343 38-398 2-367 (394)
12 TIGR00837 araaP aromatic amino 99.9 4.8E-23 1E-27 208.0 26.9 336 46-397 4-360 (381)
13 PRK15132 tyrosine transporter 99.9 1.1E-21 2.4E-26 196.2 30.4 339 40-397 4-363 (403)
14 PRK13629 threonine/serine tran 99.8 4.4E-18 9.5E-23 169.6 31.6 335 45-393 25-412 (443)
15 TIGR00814 stp serine transport 99.8 6.1E-16 1.3E-20 155.4 30.8 340 43-393 7-376 (397)
16 PRK10249 phenylalanine transpo 99.6 4.5E-12 9.8E-17 131.1 34.8 228 35-276 19-260 (458)
17 PRK10655 potE putrescine trans 99.6 3.6E-12 7.7E-17 131.3 33.5 231 36-280 5-244 (438)
18 TIGR00909 2A0306 amino acid tr 99.6 9.5E-12 2.1E-16 127.8 34.4 344 36-397 2-377 (429)
19 PRK15049 L-asparagine permease 99.6 1.7E-11 3.6E-16 128.0 35.9 349 34-397 25-407 (499)
20 PRK10746 putative transport pr 99.6 3.4E-11 7.3E-16 124.6 36.1 350 35-398 8-390 (461)
21 TIGR01773 GABAperm gamma-amino 99.5 7.2E-11 1.6E-15 122.1 38.0 229 35-278 10-254 (452)
22 TIGR00912 2A0309 spore germina 99.5 4.1E-12 8.8E-17 127.4 27.4 334 38-394 2-352 (359)
23 PRK11387 S-methylmethionine tr 99.5 8.5E-11 1.8E-15 122.1 36.9 233 35-280 12-261 (471)
24 PRK10644 arginine:agmatin anti 99.5 9.6E-11 2.1E-15 120.9 36.9 234 34-280 5-246 (445)
25 PRK10238 aromatic amino acid t 99.5 5.2E-11 1.1E-15 123.1 35.0 348 35-399 10-389 (456)
26 TIGR00905 2A0302 transporter, 99.5 7.7E-11 1.7E-15 122.5 35.5 234 36-281 6-254 (473)
27 PRK11049 D-alanine/D-serine/gl 99.5 9.3E-11 2E-15 121.7 35.0 350 35-398 18-401 (469)
28 PRK10435 cadB lysine/cadaverin 99.5 1.2E-10 2.7E-15 119.6 35.5 236 35-284 3-246 (435)
29 PRK10836 lysine transporter; P 99.5 2.6E-10 5.7E-15 119.0 38.3 234 35-281 13-261 (489)
30 PRK10580 proY putative proline 99.5 5.5E-10 1.2E-14 115.6 38.3 228 35-276 7-250 (457)
31 TIGR03810 arg_ornith_anti argi 99.5 2.3E-10 4.9E-15 118.8 34.6 348 37-397 1-381 (468)
32 COG1113 AnsP Gamma-aminobutyra 99.5 4E-11 8.6E-16 118.4 26.6 341 36-395 12-388 (462)
33 TIGR00913 2A0310 amino acid pe 99.5 4.9E-10 1.1E-14 116.8 36.3 230 37-278 2-250 (478)
34 PRK11021 putative transporter; 99.4 2.9E-10 6.3E-15 116.1 32.7 224 40-279 2-231 (410)
35 TIGR00906 2A0303 cationic amin 99.4 1.9E-10 4.1E-15 121.4 31.4 345 34-396 25-411 (557)
36 TIGR00908 2A0305 ethanolamine 99.4 4.6E-10 1E-14 115.7 33.5 230 34-276 4-242 (442)
37 TIGR00930 2a30 K-Cl cotranspor 99.4 2.9E-10 6.2E-15 125.7 33.4 229 37-278 76-333 (953)
38 PRK10197 gamma-aminobutyrate t 99.4 1.4E-09 3.1E-14 112.1 33.9 332 49-396 4-368 (446)
39 TIGR00911 2A0308 L-type amino 99.3 1.6E-09 3.4E-14 113.6 30.4 239 33-284 38-294 (501)
40 PF13520 AA_permease_2: Amino 99.3 2.3E-09 5E-14 110.0 30.0 339 40-397 2-376 (426)
41 PF03845 Spore_permease: Spore 99.3 3.3E-09 7.1E-14 104.6 27.2 287 38-339 1-297 (320)
42 COG0833 LysP Amino acid transp 99.2 1.1E-08 2.5E-13 103.3 28.8 348 35-397 42-429 (541)
43 KOG1287 Amino acid transporter 99.2 1.2E-09 2.5E-14 109.8 21.4 344 34-397 9-387 (479)
44 PRK11357 frlA putative fructos 99.2 4.3E-08 9.3E-13 101.2 33.3 233 34-279 5-249 (445)
45 PRK15238 inner membrane transp 99.2 1.3E-07 2.8E-12 99.0 36.0 228 36-278 6-264 (496)
46 COG0531 PotE Amino acid transp 99.2 3.7E-08 7.9E-13 102.2 31.8 347 34-398 9-391 (466)
47 TIGR03428 ureacarb_perm permea 99.2 3.5E-07 7.5E-12 95.3 37.8 233 33-278 9-266 (475)
48 TIGR03813 put_Glu_GABA_T putat 99.1 4.1E-07 8.9E-12 94.7 34.0 171 234-404 202-393 (474)
49 TIGR00910 2A0307_GadC glutamat 99.1 3E-07 6.5E-12 96.3 30.7 225 37-276 4-245 (507)
50 KOG1286 Amino acid transporter 99.0 7.3E-08 1.6E-12 100.4 22.2 350 34-397 27-424 (554)
51 TIGR00907 2A0304 amino acid pe 99.0 2.7E-06 5.8E-11 88.8 34.2 227 34-273 9-265 (482)
52 PF00324 AA_permease: Amino ac 98.8 3.5E-08 7.5E-13 102.9 13.7 226 49-287 7-262 (478)
53 TIGR00800 ncs1 NCS1 nucleoside 98.8 8.4E-06 1.8E-10 84.0 30.5 268 114-384 77-377 (442)
54 PRK11375 allantoin permease; P 98.8 3.1E-06 6.7E-11 87.9 26.2 267 114-384 90-391 (484)
55 KOG3832 Predicted amino acid t 98.7 5.6E-07 1.2E-11 79.3 13.5 210 44-256 17-303 (319)
56 COG1457 CodB Purine-cytosine p 98.6 6.3E-05 1.4E-09 75.8 28.0 257 117-384 85-350 (442)
57 KOG1289 Amino acid transporter 98.4 0.00046 1E-08 70.4 26.9 62 226-287 252-314 (550)
58 TIGR02358 thia_cytX probable h 98.3 0.0015 3.3E-08 66.0 29.3 257 114-384 59-322 (386)
59 PRK11017 codB cytosine permeas 98.2 0.0025 5.3E-08 64.9 29.7 171 114-286 72-244 (404)
60 COG3949 Uncharacterized membra 98.1 0.0036 7.9E-08 60.0 26.3 131 43-190 7-142 (349)
61 TIGR00813 sss transporter, SSS 98.0 0.017 3.7E-07 58.9 31.1 145 38-197 4-150 (407)
62 TIGR02119 panF sodium/pantothe 98.0 0.034 7.4E-07 57.9 34.0 149 38-197 41-191 (471)
63 TIGR00796 livcs branched-chain 97.8 0.04 8.6E-07 55.3 28.1 312 46-394 2-348 (378)
64 PF00474 SSF: Sodium:solute sy 97.8 0.02 4.2E-07 58.4 26.6 145 38-197 7-154 (406)
65 PRK09442 panF sodium/panthothe 97.8 0.069 1.5E-06 55.8 35.0 148 39-197 43-192 (483)
66 PRK12488 acetate permease; Pro 97.8 0.086 1.9E-06 56.0 34.9 144 38-197 68-214 (549)
67 COG0591 PutP Na+/proline sympo 97.7 0.1 2.2E-06 54.7 35.1 145 42-197 43-189 (493)
68 TIGR02711 symport_actP cation/ 97.7 0.12 2.6E-06 54.9 33.6 144 38-197 68-214 (549)
69 PF02133 Transp_cyt_pur: Perme 97.5 0.0036 7.8E-08 64.6 16.6 169 114-283 72-259 (440)
70 PRK09395 actP acetate permease 97.5 0.2 4.4E-06 53.2 33.9 145 38-197 70-216 (551)
71 PRK15419 proline:sodium sympor 97.5 0.19 4.2E-06 52.8 36.4 151 37-197 40-194 (502)
72 TIGR02121 Na_Pro_sym sodium/pr 97.4 0.23 4.9E-06 52.0 36.4 150 38-197 37-190 (487)
73 TIGR00835 agcS amino acid carr 97.1 0.37 7.9E-06 49.1 26.3 151 37-195 45-197 (425)
74 TIGR03648 Na_symport_lg probab 97.1 0.54 1.2E-05 50.0 33.8 145 37-196 32-178 (552)
75 PF02554 CstA: Carbon starvati 97.0 0.024 5.3E-07 55.6 15.3 195 38-261 51-245 (376)
76 COG1953 FUI1 Cytosine/uracil/t 96.9 0.62 1.3E-05 47.8 29.9 278 113-398 103-417 (497)
77 PF05525 Branch_AA_trans: Bran 96.3 1.3 2.8E-05 45.1 22.2 76 39-132 3-81 (427)
78 PRK15015 carbon starvation pro 96.2 0.33 7.1E-06 51.2 17.3 106 38-155 82-187 (701)
79 PF01566 Nramp: Natural resist 96.1 1.7 3.7E-05 43.4 25.5 77 114-191 43-121 (358)
80 PRK10484 putative transporter; 95.6 3.8 8.2E-05 43.3 33.2 146 38-197 39-195 (523)
81 COG1914 MntH Mn2+ and Fe2+ tra 95.2 4.2 9E-05 41.4 30.2 67 329-396 312-378 (416)
82 COG1966 CstA Carbon starvation 94.6 1.5 3.3E-05 45.4 15.7 105 38-154 51-155 (575)
83 PF01235 Na_Ala_symp: Sodium:a 93.8 8.8 0.00019 39.0 23.7 66 35-101 15-81 (416)
84 COG4147 DhlC Predicted symport 93.6 9.7 0.00021 39.0 29.9 281 113-397 104-442 (529)
85 TIGR00796 livcs branched-chain 92.3 2 4.3E-05 43.2 12.1 77 114-191 256-332 (378)
86 PRK00701 manganese transport p 91.9 17 0.00037 37.4 32.8 76 114-190 95-172 (439)
87 TIGR01197 nramp NRAMP (natural 90.0 24 0.00051 35.8 31.4 75 114-189 65-141 (390)
88 COG4145 PanF Na+/panthothenate 89.6 23 0.00051 35.2 29.0 337 40-392 42-413 (473)
89 PRK15433 branched-chain amino 88.5 32 0.0007 35.3 22.2 75 40-132 9-86 (439)
90 COG0733 Na+-dependent transpor 88.3 32 0.0007 35.1 23.4 32 37-68 7-39 (439)
91 KOG1288 Amino acid transporter 87.0 24 0.00052 37.9 15.0 49 230-278 298-347 (945)
92 PF05525 Branch_AA_trans: Bran 86.3 5.5 0.00012 40.7 10.0 77 114-191 262-338 (427)
93 KOG2083 Na+/K+ symporter [Inor 83.4 3.8 8.2E-05 42.9 7.3 214 43-274 39-272 (643)
94 COG1114 BrnQ Branched-chain am 80.1 39 0.00084 34.2 12.7 79 114-193 264-342 (431)
95 KOG2082 K+/Cl- cotransporter K 74.8 1.4E+02 0.003 32.8 18.7 99 39-148 115-214 (1075)
96 COG1115 AlsT Na+/alanine sympo 73.4 1.1E+02 0.0025 31.3 25.4 67 34-101 58-125 (452)
97 PHA02764 hypothetical protein; 73.3 24 0.00052 34.4 8.8 88 37-138 12-102 (399)
98 KOG2466 Uridine permease/thiam 70.6 1.4E+02 0.003 31.0 15.7 242 40-299 57-332 (572)
99 PRK15433 branched-chain amino 69.5 39 0.00086 34.6 10.1 75 115-191 267-341 (439)
100 PF12794 MscS_TM: Mechanosensi 52.8 1.9E+02 0.0041 28.7 11.4 38 259-298 47-84 (340)
101 PF08844 DUF1815: Domain of un 44.8 18 0.00038 28.1 2.1 27 437-463 15-41 (105)
102 KOG1277 Endosomal membrane pro 37.0 3.1E+02 0.0068 28.2 9.8 45 47-98 293-337 (593)
103 COG0814 SdaC Amino acid permea 36.4 4.8E+02 0.01 26.6 20.2 53 345-397 324-377 (415)
104 COG0534 NorM Na+-driven multid 35.9 4E+02 0.0086 27.5 11.2 35 253-288 311-345 (455)
105 PF03977 OAD_beta: Na+-transpo 35.4 1.1E+02 0.0024 30.0 6.4 91 226-317 145-256 (360)
106 KOG4812 Golgi-associated prote 34.1 52 0.0011 30.5 3.7 86 350-450 160-256 (262)
107 PHA02680 ORF090 IMV phosphoryl 32.4 1.6E+02 0.0034 22.7 5.3 53 233-286 18-71 (91)
108 COG1114 BrnQ Branched-chain am 30.4 6.1E+02 0.013 25.9 23.5 76 39-132 5-83 (431)
109 PHA03048 IMV membrane protein; 29.9 1.8E+02 0.004 22.4 5.4 55 232-288 17-71 (93)
110 PF02990 EMP70: Endomembrane p 26.8 3.2E+02 0.007 28.9 8.8 32 21-57 240-272 (521)
111 PRK01844 hypothetical protein; 26.0 1.3E+02 0.0029 22.3 4.0 29 422-450 7-35 (72)
112 TIGR00267 conserved hypothetic 25.3 1.2E+02 0.0027 26.6 4.6 26 41-66 89-114 (169)
113 PRK15475 oxaloacetate decarbox 24.7 1.2E+02 0.0025 30.3 4.5 89 226-315 216-325 (433)
114 PRK15476 oxaloacetate decarbox 24.5 1.2E+02 0.0026 30.2 4.5 89 226-315 216-325 (433)
115 PRK15477 oxaloacetate decarbox 24.4 1.2E+02 0.0026 30.2 4.5 89 226-315 216-325 (433)
116 PF11239 DUF3040: Protein of u 24.1 2E+02 0.0044 21.7 5.0 18 48-65 46-63 (82)
117 COG4709 Predicted membrane pro 23.4 5.5E+02 0.012 23.1 12.0 51 37-91 74-125 (195)
118 TIGR01109 Na_pump_decarbB sodi 23.4 1.4E+02 0.0029 29.3 4.6 88 226-314 145-253 (354)
119 PF05805 L6_membrane: L6 membr 23.2 2.6E+02 0.0056 25.3 6.1 89 366-461 43-135 (195)
120 PRK11281 hypothetical protein; 22.5 1.3E+03 0.028 27.1 13.9 29 259-287 543-571 (1113)
121 PRK13183 psbN photosystem II r 21.7 81 0.0018 21.1 2.0 28 261-288 7-34 (46)
122 PF01235 Na_Ala_symp: Sodium:a 21.4 6E+02 0.013 26.0 9.1 75 122-197 302-377 (416)
123 PF05767 Pox_A14: Poxvirus vir 20.4 2.8E+02 0.0061 21.6 4.9 57 231-289 16-73 (92)
No 1
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=1.8e-72 Score=575.42 Aligned_cols=461 Identities=83% Similarity=1.437 Sum_probs=408.7
Q ss_pred ccchhhhhhchhhhccc------cccccccccccccccccCCchhHHHHHHHhhhhhhhhchhHHHHHhhchhHHHHHHH
Q 012371 4 EKVETVVAGNYIEMERE------EEDSKSSKSKLSSFFWHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGLLSGILLQL 77 (465)
Q Consensus 4 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~~~g~i~l~ 77 (465)
|+.|+....+..|+|+| +....+.+.+++|..|+++|.+++.+|++++.+|.|+|+||+||+++||++|++.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~~vG~GILaLP~Af~~~G~v~Gii~lv 84 (473)
T PLN03074 5 KQAETAIVGNYVEMEVEGGGEKEEGGGGGGKSRLKSLLWHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQI 84 (473)
T ss_pred cccchhHhhccchhccccccccccCCCCCCceeeeecccCCchHHHHHHHHHHHHHhHHHHhHHHHHHHccHHHHHHHHH
Confidence 33555555555555433 233345678889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh
Q 012371 78 FYGLMGSWTAYLISILYVEYRTRKEREKVDFRNHVIQWFEVLDGLLGKHWRNIGLFFNCTFLLFGSVIQLIACASNIYYI 157 (465)
Q Consensus 78 ~~~~~~~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~ 157 (465)
+.++++.||.+++.+++.++++|+++++.++++++.+|.|+++..+||+++.+..+...+++++.|+.|++..+++++++
T Consensus 85 ~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~~e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l 164 (473)
T PLN03074 85 FYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQWFEVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYI 164 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHHHHHHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhh
Confidence 99999999999999999898888877777778777899999999999999999999999999999999999999999998
Q ss_pred hccCCchhhhHhHHHHHhhhhccCCCcchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCccCCCCchhhHhHhHHHHHHH
Q 012371 158 NDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLIMTSFTAWYLTIASLVHGQVEGVKHSGPTKMVLYFTGATNILY 237 (465)
Q Consensus 158 ~~~~~~~~~~ii~~~v~~pl~~l~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~f 237 (465)
+..++.+.|+++++++.+|++++|++++++++|.+|+.++++.++++++..+.+++.++.+++.+.++..++.++++++|
T Consensus 165 ~~~~~~~~~~~i~~~v~~~~~~i~sl~~l~~~S~ig~~~tl~~av~i~i~~i~~~~~~~~~~~~~~~~~~~f~~~~~i~f 244 (473)
T PLN03074 165 NDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLLMTTYTAWYMTIAALSHGQVEGVKHSGPTKLVLYFTGATNILY 244 (473)
T ss_pred CCCcCCCeEEeehHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchhHHHHHHHHHHHHH
Confidence 88889999999999999999999999999999999998877766666666666666555554445677888999999999
Q ss_pred HhcCccchHhHhhhccCCccchHHHHHHHHHHHHHHHhHHHHHHHhhccccccccccccccCcccHHHHHHHHHHHHHHH
Q 012371 238 TFGGHAVTVEIMHAMWKPQKFKSIYLLATLYVLTLTLPSASAVYWAFGDMLLTHSNAFSLLPRTGFRDTAVILMLIHQFI 317 (465)
Q Consensus 238 af~~~~~v~~i~~~mk~p~~~~~~~~~s~~~~~~~y~~~g~~gy~~fG~~~~~~~~il~~l~~~~~~~~~~~~~~i~~~~ 317 (465)
||+||+++|++++|||+|+||+++...+..+++++|+.+|+.||+.|||++.++++++.|+|++.+..+++++++++++.
T Consensus 245 af~g~~v~~~I~~~M~~P~~F~~~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp~~~~~~~~~~~~~i~~~~ 324 (473)
T PLN03074 245 TFGGHAVTVEIMHAMWKPQKFKYIYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLPRSGWRDAAVILMLIHQFI 324 (473)
T ss_pred HhcccccHHHHHHhccChhcccchHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCCCchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988999999999999999999999999754467888898777789999999999999
Q ss_pred HHHhhhccHHHHHHHHhcCCCCcchhhHHHhhhhHHHHHHHHHHhcCCchhhHHhhhhhhhhhhHHhhhhHHHHHHhcch
Q 012371 318 TFGFACTPLYFVWEKFIGVHNTKSTFKRALARLPVVIPIWFLAIIFPFFGPINSTVGSLLVSFTVYIIPALAHMITFAPA 397 (465)
Q Consensus 318 s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~A~~vp~~~~i~~lvGs~~~~~l~~ilP~l~~l~~~~~~ 397 (465)
+||+++.|+.+.+|+..+.+++++...|+..|+.+++.++++|+.+|+|+++++++||++++.+++++|+++|++.++++
T Consensus 325 sy~l~~~p~~~~~e~~~~~~~~k~~~~r~~~R~~lv~~~~~iA~~IP~fg~llsLvGs~~~s~l~~i~P~l~~l~~~~~~ 404 (473)
T PLN03074 325 TFGFACTPLYFVWEKAIGVHDTKSICLRALARLPVVVPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRSA 404 (473)
T ss_pred HHHHHHhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 99999999999999988655556678899999999999999999999999999999999999999999999999998888
Q ss_pred hhhhccccCCCcccCcchhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccccccccccccCCCCC
Q 012371 398 AARENAVERPPKCLGGWAGLYSLNIFVVVWVLVVGFGFGGWASMLNFIQQVDKFGLFTKCYQCPPHK 464 (465)
Q Consensus 398 ~~~~~~~~~~~~~~~~w~~~~~~~~~iii~~g~~~~v~gt~~si~~ii~~~~~~~~~~~~~~c~~~~ 464 (465)
.+|++..|||++...+|.+..++|+++++++++++++.|+|+|+++|++++++|+.|++||+|+|+.
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~n~~iiv~~~~~g~~~G~~asi~~ii~~~~~~~~f~~~~~c~~~~ 471 (473)
T PLN03074 405 SARQNAAEKPPFFLPSWTGMYVVNAFVVVWVLVVGFGFGGWASMTNFVRQIDTFGLFAKCYQCPPPS 471 (473)
T ss_pred hhhhhcccCCcccCCccceehhhhhHHHHhhhhHhhccchHHHHHHHHHhhhhhhhhhhhccCCCCC
Confidence 7777777788765566666788999999877899888999999999999999999999999999985
No 2
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=2.6e-61 Score=473.58 Aligned_cols=389 Identities=22% Similarity=0.249 Sum_probs=335.2
Q ss_pred ccccccCCchhHHHHHHHhhhhhhhhchhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccc
Q 012371 32 SSFFWHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGLLSGILLQLFYGLMGSWTAYLISILYVEYRTRKEREKVDFRNH 111 (465)
Q Consensus 32 ~~~~~~~~s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~~~~~~~ 111 (465)
.++.++++|..++..|++|.++|+|+|++|+||+++||+.|.+..+++++++.||.+.+++|.++.++|..++..
T Consensus 40 ~~~~~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~----- 114 (449)
T KOG1304|consen 40 LRDREHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSL----- 114 (449)
T ss_pred cccCCCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccc-----
Confidence 344567899999999999999999999999999999999999999999999999999999999999887643332
Q ss_pred cccHHHHHHHh----------hchhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhc-----cCCchhhhHhHHHHHhh
Q 012371 112 VIQWFEVLDGL----------LGKHWRNIGLFFNCTFLLFGSVIQLIACASNIYYIND-----NLDKRTWTYIFGACCAT 176 (465)
Q Consensus 112 ~~~y~~l~~~~----------~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~-----~~~~~~~~ii~~~v~~p 176 (465)
+|.+.++.+ +||++|.++++.+.++|+|.|++|+++++++++++.+ ..+.+.|+.+...++++
T Consensus 115 --~y~~~~~~a~~~~~~~~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~~~~~s~~~~i~~~~~~~ll 192 (449)
T KOG1304|consen 115 --DYAETAESAMEGGPGWLRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHSPGVLSVRLYILIQLPPLLL 192 (449)
T ss_pred --cHHHHHHHHHcCCcHHHHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccCCCCccHHHHHHHHHHHHHH
Confidence 555555444 6899999999999999999999999999999988754 35678889999999999
Q ss_pred hhccCCCcchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCccC-CCCchhhHhHhHHHHHHHHhcCccchHhHhhhccCC
Q 012371 177 TVFIPSFHNYRIWSFLGLIMTSFTAWYLTIASLVHGQVEGVKH-SGPTKMVLYFTGATNILYTFGGHAVTVEIMHAMWKP 255 (465)
Q Consensus 177 l~~l~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~a~~~~~faf~~~~~v~~i~~~mk~p 255 (465)
++++|+++.|+++|.+|++..+....++ +.......+ +.+. +...++.++...+|+.+|||+|++++.|++++||+|
T Consensus 193 l~~Ir~Lk~Lsp~Sl~Anv~~~~g~~ii-~~y~~~~~~-~~~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~Mk~P 270 (449)
T KOG1304|consen 193 LNLIRNLKILSPFSLFANVFILVGLAII-MYYLVQDLP-PTSDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENSMKKP 270 (449)
T ss_pred HHHHHhhHHhhHHHHHHHHHHHHHHHHH-HHHHHhccC-CccccccccchhhhHHHHHHHHHHhccceEEEehhhcccCh
Confidence 9999999999999999998875443333 333323222 2222 223346677888899999999999999999999999
Q ss_pred ccch---HHHHHHHHHHHHHHHhHHHHHHHhhccccccccccccccCcccHHHHHHHHHHHHHHHHHHhhhccHHHHHHH
Q 012371 256 QKFK---SIYLLATLYVLTLTLPSASAVYWAFGDMLLTHSNAFSLLPRTGFRDTAVILMLIHQFITFGFACTPLYFVWEK 332 (465)
Q Consensus 256 ~~~~---~~~~~s~~~~~~~y~~~g~~gy~~fG~~~~~~~~il~~l~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~ 332 (465)
++|+ +++..++.+++++|+.+|++||++||+++ ++.|+.|+|++++...+++++++.++++||+|++|..+++|+
T Consensus 271 ~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v--~~sITLNLP~~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~ 348 (449)
T KOG1304|consen 271 QKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDV--KGSITLNLPQEILSQTVKLLLAIAIFLTYPLQFYVPIEIIEP 348 (449)
T ss_pred hhcCCccchHHHHHHHHHHHHHHHHHHHHhhccccc--cceEEecCCccHHHHHHHHHHHHHHHHcCchhhhhhHHHHHH
Confidence 9999 99999999999999999999999999999 789999999999999999999999999999999999999999
Q ss_pred HhcC--CCCcchhhHHHhhhhHHHHHHHHHHhcCCchhhHHhhhhhhhhhhHHhhhhHHHHHHhcchhhhhccccCCCcc
Q 012371 333 FIGV--HNTKSTFKRALARLPVVIPIWFLAIIFPFFGPINSTVGSLLVSFTVYIIPALAHMITFAPAAARENAVERPPKC 410 (465)
Q Consensus 333 ~~~~--~~~~~~~~~~~~r~~~~~~~~~~A~~vp~~~~i~~lvGs~~~~~l~~ilP~l~~l~~~~~~~~~~~~~~~~~~~ 410 (465)
.++. .++++++....+|..+++++..+|..+||++.+++++||++++.+.+++|++++++.++++.++
T Consensus 349 ~i~~k~~~~~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~~---------- 418 (449)
T KOG1304|consen 349 GIRKKFSENRKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIELITFYPEGKG---------- 418 (449)
T ss_pred hHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhcccccC----------
Confidence 7642 2334567789999999999999999999999999999999999999999999999999877531
Q ss_pred cCcchhhhHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 012371 411 LGGWAGLYSLNIFVVVWVLVVGFGFGGWASMLNF 444 (465)
Q Consensus 411 ~~~w~~~~~~~~~iii~~g~~~~v~gt~~si~~i 444 (465)
...| +.++|++++++ |+++++.|||+|+++|
T Consensus 419 ~~~~--~~~~ni~l~~~-G~~~~v~Gty~si~~i 449 (449)
T KOG1304|consen 419 RFMW--KLIKNIVLIVF-GVFGFVYGTYTSIKEI 449 (449)
T ss_pred ceeh--HHHHHHHHHHH-HHHHHHHHHhhhhhcC
Confidence 1234 57899888885 9999999999999864
No 3
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=2.4e-57 Score=453.60 Aligned_cols=388 Identities=28% Similarity=0.397 Sum_probs=328.9
Q ss_pred ccccCCchhHHHHHHHhhhhhhhhchhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 012371 34 FFWHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGLLSGILLQLFYGLMGSWTAYLISILYVEYRTRKEREKVDFRNHVI 113 (465)
Q Consensus 34 ~~~~~~s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~ 113 (465)
..+++.|++++.+|.++.++|.|+|++|||++|+||++|++++++.++++.||+++|.+|+...+.+ ++++. +
T Consensus 33 ~~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~---~~~r~----~ 105 (437)
T KOG1303|consen 33 TPSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAV---PGKRR----Y 105 (437)
T ss_pred ccCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC---CCccC----C
Confidence 3456789999999999999999999999999999999999999999999999999999997555443 33321 4
Q ss_pred cHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhc-------cCCchhhhHhHHHHHhhhhccCCCcch
Q 012371 114 QWFEVLDGLLGKHWRNIGLFFNCTFLLFGSVIQLIACASNIYYIND-------NLDKRTWTYIFGACCATTVFIPSFHNY 186 (465)
Q Consensus 114 ~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~-------~~~~~~~~ii~~~v~~pl~~l~~l~~l 186 (465)
+|.|+++++||+++++++.+.+.+.++++|+.|++..+|+++.+.+ ..+.+.|+++++.+.+|++++||++++
T Consensus 106 ~Y~dl~~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~~l~~~~f~iif~~i~~~~s~lp~~~~l 185 (437)
T KOG1303|consen 106 RYPDLGQAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDNSLDKQYFIIIFGLIVLPLSQLPNFHSL 185 (437)
T ss_pred ChHHHHHHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccceehhhhHHHHHHHHHHCCCcchh
Confidence 8999999999999999999999999999999999999999987632 234678999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhcccCCC---ccCCCCchhhHhHhHHHHHHHHhcCccchHhHhhhccCCccchHHHH
Q 012371 187 RIWSFLGLIMTSFTAWYLTIASLVHGQVEG---VKHSGPTKMVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKSIYL 263 (465)
Q Consensus 187 ~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~a~~~~~faf~~~~~v~~i~~~mk~p~~~~~~~~ 263 (465)
+++|..+.++++..+++.+..++.+|.... .+.....+....++++|++.|||+||+++|+||++||+|++|+|++.
T Consensus 186 ~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~f~a~g~iaFaf~gH~v~peIq~tMk~p~~f~~~~l 265 (437)
T KOG1303|consen 186 SYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDLGTIPTVFTALGIIAFAYGGHAVLPEIQHTMKSPPKFKKALL 265 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCcccCCCCcchhhhhhheeeeecCCeeeeehHhhcCCchhhhhHHH
Confidence 999999999887666566666666663321 11111222122289999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHhhccccccccccccccC-cccHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHhcCCCC---
Q 012371 264 LATLYVLTLTLPSASAVYWAFGDMLLTHSNAFSLLP-RTGFRDTAVILMLIHQFITFGFACTPLYFVWEKFIGVHNT--- 339 (465)
Q Consensus 264 ~s~~~~~~~y~~~g~~gy~~fG~~~~~~~~il~~l~-~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~--- 339 (465)
.++.+++++|+++++.||++|||++ +++++.|++ +.++...+++++.+|++.+|+++..|+.+.+|++...+.+
T Consensus 266 is~~~~~~~y~~vai~GY~aFG~~~--~~~il~s~~~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~~E~~~~~~~~~~~ 343 (437)
T KOG1303|consen 266 ISYIIVTFLYFPVAIIGYWAFGDSV--PDNILLSLQPPTWLIALANILIVLHLIGSYQIYAQPLFDVVEKLIGVKHPDFK 343 (437)
T ss_pred HHHHHHHHHHHHHHHhhhhhhcccc--chhhhhcccCchhHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHhccCCcccc
Confidence 9999999999999999999999999 689999996 6788899999999999999999999999999999874443
Q ss_pred -cchhhHHHhhhhHHHHHHHHHHhcCCchhhHHhhhhhhhhhhHHhhhhHHHHHHhcchhhhhccccCCCcccCcchhhh
Q 012371 340 -KSTFKRALARLPVVIPIWFLAIIFPFFGPINSTVGSLLVSFTVYIIPALAHMITFAPAAARENAVERPPKCLGGWAGLY 418 (465)
Q Consensus 340 -~~~~~~~~~r~~~~~~~~~~A~~vp~~~~i~~lvGs~~~~~l~~ilP~l~~l~~~~~~~~~~~~~~~~~~~~~~w~~~~ 418 (465)
+....|.+.|+.+++.++++|+.+|+|+++++++||+...++++++|+++|+..+|. +++.++|.
T Consensus 344 ~~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~~k~-----------~~~s~~~~--- 409 (437)
T KOG1303|consen 344 KRSLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLLIKKP-----------KRFSPKWL--- 409 (437)
T ss_pred ccccceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----------hhhhHHHH---
Confidence 356789999999999999999999999999999999999999999999999998543 34445563
Q ss_pred HHHHHH-HHHHHHHHhhhhhHHHHHHHHH
Q 012371 419 SLNIFV-VVWVLVVGFGFGGWASMLNFIQ 446 (465)
Q Consensus 419 ~~~~~i-ii~~g~~~~v~gt~~si~~ii~ 446 (465)
.+|.+ +++ +++..+....++++.++.
T Consensus 410 -~~~~~~~~~-~~~~~v~~~~~~~~~li~ 436 (437)
T KOG1303|consen 410 -LNWVIILVV-GLLLSVLAAVGGVRSLII 436 (437)
T ss_pred -HHHHhhhhh-hhhHHHHHHHHHHHHHhh
Confidence 55555 343 455555677777777654
No 4
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=5.6e-56 Score=455.92 Aligned_cols=381 Identities=15% Similarity=0.184 Sum_probs=309.7
Q ss_pred cCCchhHHHHHHHhhhhhhhhchhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccHH
Q 012371 37 HGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGLLSGILLQLFYGLMGSWTAYLISILYVEYRTRKEREKVDFRNHVIQWF 116 (465)
Q Consensus 37 ~~~s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~ 116 (465)
.+++..++.+|++|+++|+|+|++|+||+++||++|++++++++.++.||.++|.++.++ . +.++|+
T Consensus 58 ~~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~----~---------~~~sY~ 124 (467)
T PTZ00206 58 PPGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADK----T---------NIRTYE 124 (467)
T ss_pred CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc----C---------CCCCHH
Confidence 456789999999999999999999999999999999999999999999999999887421 1 124999
Q ss_pred HHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccC----------Cch-hhhHhHHHHHhhhhccCCCcc
Q 012371 117 EVLDGLLGKHWRNIGLFFNCTFLLFGSVIQLIACASNIYYINDNL----------DKR-TWTYIFGACCATTVFIPSFHN 185 (465)
Q Consensus 117 ~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~----------~~~-~~~ii~~~v~~pl~~l~~l~~ 185 (465)
|++++++||++++++++.+.++++|+|++|+++.+|.++.+.+.. .++ .+.+++..+++|++++|++++
T Consensus 125 ~la~~~~G~~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~lPLs~~r~i~~ 204 (467)
T PTZ00206 125 GVARVLLGPWGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFMLPLVIPRHIDS 204 (467)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhccCcEEeeeehhhhHhhhcccccchHH
Confidence 999999999999999999999999999999999999997654311 122 234456678899999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhcccCCCccC---C--C------CchhhHhHhHHHHHHHHhcCccchHhHhhhccC
Q 012371 186 YRIWSFLGLIMTSFTAWYLTIASLVHGQVEGVKH---S--G------PTKMVLYFTGATNILYTFGGHAVTVEIMHAMWK 254 (465)
Q Consensus 186 l~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~--~------~~~~~~~~~a~~~~~faf~~~~~v~~i~~~mk~ 254 (465)
|+++|.++++++++..+.+++.++.++.+++.++ . + .....+.+.++|+++|||.||.++|++++|||+
T Consensus 205 L~~~S~i~~~~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M~~ 284 (467)
T PTZ00206 205 LRYVSTIAVSFMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTN 284 (467)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhhcc
Confidence 9999999998776655444444454444332211 0 0 011135788999999999999999999999998
Q ss_pred C--ccchHHHHHHHHHHHHHHHhHHHHHHHhhcccccccccccccc-Cc-ccHHHHHHHHHHHHHHHHHHhhhccHHHHH
Q 012371 255 P--QKFKSIYLLATLYVLTLTLPSASAVYWAFGDMLLTHSNAFSLL-PR-TGFRDTAVILMLIHQFITFGFACTPLYFVW 330 (465)
Q Consensus 255 p--~~~~~~~~~s~~~~~~~y~~~g~~gy~~fG~~~~~~~~il~~l-~~-~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~ 330 (465)
| +|+.++...++.+++++|..+|++||++||+++ +++++.|+ |. +....++++++.+.++++||++.+|+|+.+
T Consensus 285 ~t~~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v--~~~Illn~~p~~~~~~~v~~~~~~~~v~~sypL~~~p~r~~i 362 (467)
T PTZ00206 285 RSVGKFVLASTIAMGMCFTMYVLTAFFGYMDFGRNV--TGSVLLMYDPVNEPAIMVGFVGVLVKLFVSYALLGMACRNAL 362 (467)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhhhcccccc--chHHHHhCCCCCCchhhHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence 4 678889999999999999999999999999999 78999999 43 456788899999999999999999999999
Q ss_pred HHHhcCC-CCcchhhHHHhhhhHHHHHHHHHHhcCCchhhHHhhhhhhhhhhHHhhhhHHHHHHhcchhhhhccccCCCc
Q 012371 331 EKFIGVH-NTKSTFKRALARLPVVIPIWFLAIIFPFFGPINSTVGSLLVSFTVYIIPALAHMITFAPAAARENAVERPPK 409 (465)
Q Consensus 331 ~~~~~~~-~~~~~~~~~~~r~~~~~~~~~~A~~vp~~~~i~~lvGs~~~~~l~~ilP~l~~l~~~~~~~~~~~~~~~~~~ 409 (465)
++.+..+ ++...++|...+..+++.+.++|+.+|+++.+++++||++++.++|++|+++|++....+.+ +
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~~~l~fi~P~lf~l~~~~~~~~------~--- 433 (467)
T PTZ00206 363 YDVIGWDARKVAFWKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISGGLLGFILPALLFMYSGGFTWQ------K--- 433 (467)
T ss_pred HHHhCCCcccCchhhHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHHHHHHHHHHHHHHHhcCCccHH------h---
Confidence 8887432 23344566666777777889999999999999999999999999999999999984321111 0
Q ss_pred ccCcchhhhHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 012371 410 CLGGWAGLYSLNIFVVVWVLVVGFGFGGWASMLNFI 445 (465)
Q Consensus 410 ~~~~w~~~~~~~~~iii~~g~~~~v~gt~~si~~ii 445 (465)
..+| ..+.+++++++ |++++++|||+|+++.+
T Consensus 434 -~~~~--~~~~~~~lli~-Gv~~~v~Gt~~si~~~~ 465 (467)
T PTZ00206 434 -VGPF--YYISTYVVLIT-GVIAIVFGTGATIWGVT 465 (467)
T ss_pred -hchH--HHHHHHHHHHH-HhheEEecchhHhhHHh
Confidence 0122 23688888885 89999999999999876
No 5
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=100.00 E-value=5.8e-53 Score=430.27 Aligned_cols=383 Identities=25% Similarity=0.375 Sum_probs=318.3
Q ss_pred cCCchhHHHHHHHhhhhhhhhchhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccHH
Q 012371 37 HGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGLLSGILLQLFYGLMGSWTAYLISILYVEYRTRKEREKVDFRNHVIQWF 116 (465)
Q Consensus 37 ~~~s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~ 116 (465)
||+|.+++++|++|+++|+|+|++|++|+++||++|++++++++.++.||.+++.++..+.. + +++..+|+
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~-~--------~~~~~~y~ 71 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMP-N--------GTGRRSYG 71 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccc-c--------cccccccc
Confidence 58899999999999999999999999999999999999999999999999999999854432 1 01224999
Q ss_pred HHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhcc------CCchhhhHhHHHHHhhhhccCCCcchhHHH
Q 012371 117 EVLDGLLGKHWRNIGLFFNCTFLLFGSVIQLIACASNIYYINDN------LDKRTWTYIFGACCATTVFIPSFHNYRIWS 190 (465)
Q Consensus 117 ~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~------~~~~~~~ii~~~v~~pl~~l~~l~~l~~~s 190 (465)
|++++++||++++++++++.++++|.+++|++..+|.+..+.+. .++..|.++..++++|++++|+++++++.|
T Consensus 72 ~l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s 151 (409)
T PF01490_consen 72 DLARRAFGPKGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGDLFISRYVWIIIFALIVLPLSFLKNLKSLRYLS 151 (409)
T ss_pred ccccccccccccccccchheeccccccceeEEEeeeeeecccccccccccccccccccccccccccccccchhhHHHHHh
Confidence 99999999999999999999999999999999999999877543 456677888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhh--cccCCCccCC---CCchhhHhHhHHHHHHHHhcCccchHhHhhhccCCccch---HHH
Q 012371 191 FLGLIMTSFTAWYLTIASLV--HGQVEGVKHS---GPTKMVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFK---SIY 262 (465)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~---~~~~~~~~~~a~~~~~faf~~~~~v~~i~~~mk~p~~~~---~~~ 262 (465)
.+++++.++........... .++..+.+.. +..++.+++.++|+++|||.+|.++|++++|||+|++++ ++.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~ 231 (409)
T PF01490_consen 152 ILGLFSIFYFIVIVVIYIISYGPGEPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKFKKMKKVL 231 (409)
T ss_pred hhhhhccceeeeeecceeeeeecccccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCCccccccceee
Confidence 99998775421111111111 1111122111 234567899999999999999999999999999999987 888
Q ss_pred HHHHHHHHHHHHhHHHHHHHhhccccccccccccccCccc-HHHHHHHHHHHHHHHHHHhhhccHHHHHHHHhcC-----
Q 012371 263 LLATLYVLTLTLPSASAVYWAFGDMLLTHSNAFSLLPRTG-FRDTAVILMLIHQFITFGFACTPLYFVWEKFIGV----- 336 (465)
Q Consensus 263 ~~s~~~~~~~y~~~g~~gy~~fG~~~~~~~~il~~l~~~~-~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~----- 336 (465)
..++..++++|..+|+.||++||+++ ++|++.|+|+++ +..++++++.++++.+||++.+|.++.+++.+..
T Consensus 232 ~~s~~~~~~~y~~~g~~gy~~fg~~~--~~~il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~ 309 (409)
T PF01490_consen 232 SISMIICFIIYLLFGIFGYLAFGDSV--QGNILLNLPNDDVLIIIARILLVISLLLSYPLQLFPARNSLENLLFKRAASS 309 (409)
T ss_pred eehhhhhhHHhhhhhhcccceeeeee--cchhhhcCCCcccccccccccchhhhhhccccccchhHhhhhhheecccccc
Confidence 99999999999999999999999999 789999999875 8899999999999999999999999999998742
Q ss_pred -----CCCcchhhHHHhhhhHHHHHHHHHHhcCCchhhHHhhhhhhhhhhHHhhhhHHHHHHhcchhhhhccccCCCccc
Q 012371 337 -----HNTKSTFKRALARLPVVIPIWFLAIIFPFFGPINSTVGSLLVSFTVYIIPALAHMITFAPAAARENAVERPPKCL 411 (465)
Q Consensus 337 -----~~~~~~~~~~~~r~~~~~~~~~~A~~vp~~~~i~~lvGs~~~~~l~~ilP~l~~l~~~~~~~~~~~~~~~~~~~~ 411 (465)
+++.++++|...|++++..+.++|..+|+++++++++|+++++.+.|++|+++|++.+++++++.
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~~~~~---------- 379 (409)
T PF01490_consen 310 RDSPKNTPSSRWLRYLIRIILVLLSFLIAIFVPNFGDIISLVGALFGSFISFILPALLYLKLFKRKRNSF---------- 379 (409)
T ss_pred ccccccccccceeeeeeecchhhhhhhhhhhccchhhhhcccchHHHHhHHHHHHHHHHHHhhccccccc----------
Confidence 12334677899999999999999999999999999999999999999999999999988764221
Q ss_pred CcchhhhHHHHHHHHHHHHHHhhhhhHHHH
Q 012371 412 GGWAGLYSLNIFVVVWVLVVGFGFGGWASM 441 (465)
Q Consensus 412 ~~w~~~~~~~~~iii~~g~~~~v~gt~~si 441 (465)
.+|......+++++++ |+++++.|+|+++
T Consensus 380 ~~~~~~~~~~~~~~~~-g~~~~~~~~~~~i 408 (409)
T PF01490_consen 380 GWWWILSILNWIIIVF-GVVLMVFGTYQSI 408 (409)
T ss_pred ceeehhhccceEEEEE-eeehhHHhHHHHc
Confidence 1111112345565553 7888888999876
No 6
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=100.00 E-value=4.8e-42 Score=341.92 Aligned_cols=378 Identities=17% Similarity=0.166 Sum_probs=299.5
Q ss_pred ccCCchhHHHHHHHhhhhhhhhchhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccH
Q 012371 36 WHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGLLSGILLQLFYGLMGSWTAYLISILYVEYRTRKEREKVDFRNHVIQW 115 (465)
Q Consensus 36 ~~~~s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y 115 (465)
++++|.+++++|+.|+++|+|++++|+||++.|++.|++++.++|+++.++.+++.++..+.. + ++|
T Consensus 3 ~~~~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~~-----------~--~ty 69 (411)
T KOG1305|consen 3 SGKTSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKSG-----------E--RTY 69 (411)
T ss_pred CCccchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhcC-----------C--CCH
Confidence 456789999999999999999999999999999999999999999999999999998853321 1 299
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhc-----c------CCchh-hhHhHHHHHhhhhccCCC
Q 012371 116 FEVLDGLLGKHWRNIGLFFNCTFLLFGSVIQLIACASNIYYIND-----N------LDKRT-WTYIFGACCATTVFIPSF 183 (465)
Q Consensus 116 ~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~-----~------~~~~~-~~ii~~~v~~pl~~l~~l 183 (465)
+++++..+|+.++....+....+..| |++|++..+|.+..+.. + .+++. |.++...+++|+++.|++
T Consensus 70 ~~l~~~~~g~~g~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~~~~~~~~~~ill~~~~~i~pLsl~k~l 148 (411)
T KOG1305|consen 70 SSLGDLIFGKLGKVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGGSHYLDRNFLILLVLLFIILPLSLLKNL 148 (411)
T ss_pred HHHHHHHcCCCceeeehhhHHhhhcc-ceEEEEEEccccchhhhhcccccccccccccceeEeehHHHHHHHHHHHHHhh
Confidence 99999999999976666666666666 69999999998864421 1 12222 567777899999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhhhccc-CCCccCC--CCchhhHhHhHHHHHHHHhcCccchHhHhhhccCCcc--c
Q 012371 184 HNYRIWSFLGLIMTSFTAWYLTIASLVHGQ-VEGVKHS--GPTKMVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK--F 258 (465)
Q Consensus 184 ~~l~~~s~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~--~~~~~~~~~~a~~~~~faf~~~~~v~~i~~~mk~p~~--~ 258 (465)
+++++.|.++.++.++..+.+.+....... .+..... ....+.+++.++++++|||.||.++.++++|||||++ +
T Consensus 149 ~~Lk~tS~~s~~~~~~fv~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~i 228 (411)
T KOG1305|consen 149 DSLKYTSALSLASVVYFVVLVVYKYFQGPCALGRLSYLVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKKI 228 (411)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcccccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCchHHHH
Confidence 999999999998887655444444443221 1111111 1222368899999999999999999999999999965 7
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHhhccccccccccccccCcccH-------HHHHHHHHHHHHHHHHHhhhccHHHHHH
Q 012371 259 KSIYLLATLYVLTLTLPSASAVYWAFGDMLLTHSNAFSLLPRTGF-------RDTAVILMLIHQFITFGFACTPLYFVWE 331 (465)
Q Consensus 259 ~~~~~~s~~~~~~~y~~~g~~gy~~fG~~~~~~~~il~~l~~~~~-------~~~~~~~~~i~~~~s~pl~~~p~~~~~~ 331 (465)
+++...+...+.++|..+|..||+.|||.+ .+|++.++|++.. ...++..+.++++.++|+..+|+|..++
T Consensus 229 ~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v--~~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~l~ 306 (411)
T KOG1305|consen 229 QRVSNIAIILATLIYLLTGLFGYLTFGDLV--KGNLLHNYDSILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMNLD 306 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhheecccc--hHHHHhcCCcccchhHhhhhHHHHHHHHHHHHHHHHHHHhchHHHHHH
Confidence 889999999999999999999999999999 7899999986442 3789999999999999999999999988
Q ss_pred HHhcCCC----CcchhhHHHhhhhHHHHHHHHHHhcCCchhhHHhhhhhhhhhhHHhhhhHHHHHHhcchhhhhccccCC
Q 012371 332 KFIGVHN----TKSTFKRALARLPVVIPIWFLAIIFPFFGPINSTVGSLLVSFTVYIIPALAHMITFAPAAARENAVERP 407 (465)
Q Consensus 332 ~~~~~~~----~~~~~~~~~~r~~~~~~~~~~A~~vp~~~~i~~lvGs~~~~~l~~ilP~l~~l~~~~~~~~~~~~~~~~ 407 (465)
+.+..+. +.+..+++++...++....+.|+.+|+++++++++||++++.++|++|+++|++.+|+ ..++
T Consensus 307 ~~~~~~~~~~~~~s~~r~~~itl~ll~~~~l~ai~~p~i~~i~~~vGAT~~~~i~FI~P~~~yl~~~~~-~~~~------ 379 (411)
T KOG1305|consen 307 ELLFPYQPGLTSFSGKRHFVITLLLLIFTFLLAIFVPSIGTIFGFVGATSSTSISFILPALYYLKASKK-KSRE------ 379 (411)
T ss_pred HHhcccCCCCCCccceehhHHHHHHHHHHHHHHHHhccHHHHHHHhhhhhhhhhHHHHHHHhhheeecc-cccc------
Confidence 7763211 1334567889999999999999999999999999999999999999999999999876 2111
Q ss_pred CcccCcchhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 012371 408 PKCLGGWAGLYSLNIFVVVWVLVVGFGFGGWASMLNFIQQ 447 (465)
Q Consensus 408 ~~~~~~w~~~~~~~~~iii~~g~~~~v~gt~~si~~ii~~ 447 (465)
....+...++ ++.....|+...+.++..+
T Consensus 380 ----------~~~~~~~~~~-~~~~~i~~~~~~i~~~~~~ 408 (411)
T KOG1305|consen 380 ----------PLGALIFLIL-GVLLSIIGVAVMIYDLLAK 408 (411)
T ss_pred ----------chHHHHHHHH-HHHHHHHHHHHHHHHHHhc
Confidence 1133444443 4444445666666666543
No 7
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=8.7e-44 Score=329.66 Aligned_cols=391 Identities=13% Similarity=0.137 Sum_probs=322.0
Q ss_pred ccccCCchhHHHHHHHhhhhhhhhchhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc--ccccc
Q 012371 34 FFWHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGLLSGILLQLFYGLMGSWTAYLISILYVEYRTRKEREKV--DFRNH 111 (465)
Q Consensus 34 ~~~~~~s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~~--~~~~~ 111 (465)
+-..|.+.++|..|.+|.+-|.=+++||+|....||+ ++..++.++.++.||+.+|++|..|-. | +|. +.|
T Consensus 112 e~~~kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGyw-~i~amvg~A~vCcyTGk~Li~CLYE~~---~-dGevVrvR-- 184 (524)
T KOG4303|consen 112 EASEKISALQAAWNVTNAIQGMFIVGLPIAVLHGGYW-SIGAMVGVAYVCCYTGKLLIECLYENG---E-DGEVVRVR-- 184 (524)
T ss_pred CCCCccHHHHHhhhhhhhhheeeEeccceeeeEcchh-HHHHHHhhhhhhhccchhhhhhhccCC---C-CCcEEEee--
Confidence 3445789999999999999999999999999999997 799999999999999999999975532 2 221 222
Q ss_pred cccHHHHHHHhhchhh-HHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhc--cCCchhhhHhHHHHHhhhhccCCCcchhH
Q 012371 112 VIQWFEVLDGLLGKHW-RNIGLFFNCTFLLFGSVIQLIACASNIYYIND--NLDKRTWTYIFGACCATTVFIPSFHNYRI 188 (465)
Q Consensus 112 ~~~y~~l~~~~~G~~~-~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~--~~~~~~~~ii~~~v~~pl~~l~~l~~l~~ 188 (465)
.+|.+++..+++|.. ...+.+.+.+.++.+|+.|.+..+|.++.-.+ ..+++-|+++.++.++|.+++|+++-.+.
T Consensus 185 -dsYvaIA~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~~svd~~sWm~i~~a~LLpc~FLk~Lk~VS~ 263 (524)
T KOG4303|consen 185 -DSYVAIADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPGLSVDKASWMMITSASLLPCSFLKDLKIVSR 263 (524)
T ss_pred -hhHHHHHHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCCCCccccchhhhhhHHHhhhHHHHHHHHHHH
Confidence 399999999998874 47788899999999999999999999987766 56788999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccCCCccC-CCCchhhHhHhHHHHHHHHhcCccchHhHhhhccCCccchHHHHHHHH
Q 012371 189 WSFLGLIMTSFTAWYLTIASLVHGQVEGVKH-SGPTKMVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKSIYLLATL 267 (465)
Q Consensus 189 ~s~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~a~~~~~faf~~~~~v~~i~~~mk~p~~~~~~~~~s~~ 267 (465)
+|++..++-+..-.+++.+|+..-...++.. ....+...+.-++|+++|+|..|..+|+++..|++|++|..++.++-.
T Consensus 264 lSf~ct~sH~viN~i~v~YCLs~~~dW~wskv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGNM~~ps~Fn~Ml~WsHI 343 (524)
T KOG4303|consen 264 LSFFCTISHLVINLIMVLYCLSFVSDWSWSKVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGNMKNPSQFNVMLKWSHI 343 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccceeEEEEEEcccCceEEEEEEEeeeceeeccccccccCChhHheeeeehHHH
Confidence 8887777665544444445544321111111 112334556678899999999999999999999999999999999888
Q ss_pred HHHHHHHhHHHHHHHhhccccccccccccccCcccHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHhcC--C--------
Q 012371 268 YVLTLTLPSASAVYWAFGDMLLTHSNAFSLLPRTGFRDTAVILMLIHQFITFGFACTPLYFVWEKFIGV--H-------- 337 (465)
Q Consensus 268 ~~~~~y~~~g~~gy~~fG~~~~~~~~il~~l~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~--~-------- 337 (465)
.+.++-..+|..||++||+.+ +..|.+|+|+..+..++++++.+..++|||+-.+.+.+.+|+-+.. +
T Consensus 344 AAaVfK~~Fg~~~fLTf~~~T--qevItnnLp~qsfk~~VN~fLV~KALLSYPLPfyAAvelLe~nlF~g~p~t~Fpscy 421 (524)
T KOG4303|consen 344 AAAVFKVVFGMLGFLTFGELT--QEVITNNLPNQSFKILVNLFLVVKALLSYPLPFYAAVELLENNLFLGYPQTPFPSCY 421 (524)
T ss_pred HHHHHHHHHHHheeeeechhh--HHHHhcCCCccchhhhhhHHHHHHHHHcCCchHHHHHHHHHHhhhcCCCCCCCceee
Confidence 888889999999999999999 7899999999899999999999999999999999999999996521 1
Q ss_pred --CCcchhhHHHhhhhHHHHHHHHHHhcCCchhhHHhhhhhhhhhhHHhhhhHHHHHHhcchhhhhccccCCCcccCcch
Q 012371 338 --NTKSTFKRALARLPVVIPIWFLAIIFPFFGPINSTVGSLLVSFTVYIIPALAHMITFAPAAARENAVERPPKCLGGWA 415 (465)
Q Consensus 338 --~~~~~~~~~~~r~~~~~~~~~~A~~vp~~~~i~~lvGs~~~~~l~~ilP~l~~l~~~~~~~~~~~~~~~~~~~~~~w~ 415 (465)
|.+-+-+.+.+|+++++.+.++|+.+|+|..+++++|+++++.++|++|++||+++.++.-...
T Consensus 422 s~Dg~Lk~WgltlR~~lvvfTllmAi~vPhf~~LMGl~Gs~TGtmLsFiwP~lFHl~ik~~~L~~~-------------- 487 (524)
T KOG4303|consen 422 SPDGSLKEWGLTLRIILVVFTLLMAISVPHFVELMGLVGSITGTMLSFIWPALFHLYIKEKTLNNF-------------- 487 (524)
T ss_pred CCCcchhhheeeeeeHHHHHHHHHHHHhHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHhhhhH--------------
Confidence 1111223456899999999999999999999999999999999999999999999987653221
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccc
Q 012371 416 GLYSLNIFVVVWVLVVGFGFGGWASMLNFIQQVDK 450 (465)
Q Consensus 416 ~~~~~~~~iii~~g~~~~v~gt~~si~~ii~~~~~ 450 (465)
....+..++++ |+..++.|.|-|..++++.++.
T Consensus 488 -e~~fD~~Ii~~-G~~~~vsG~y~S~~~Li~A~~~ 520 (524)
T KOG4303|consen 488 -EKRFDQGIIIM-GCSVCVSGVYFSSMELIRAINS 520 (524)
T ss_pred -HHhhheeEEEE-eeeEEEEeEehhhHHHHHHHhc
Confidence 22366666776 6667778999999999999876
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=100.00 E-value=7.7e-31 Score=264.99 Aligned_cols=345 Identities=15% Similarity=0.140 Sum_probs=257.7
Q ss_pred ccccCCchhHHHHHHHhhhhhhhhchhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 012371 34 FFWHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGLLSGILLQLFYGLMGSWTAYLISILYVEYRTRKEREKVDFRNHVI 113 (465)
Q Consensus 34 ~~~~~~s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~ 113 (465)
..+++.+.++.++++.++++|+|+|++|++++..|++++++++++.+.+++++.++++++..+.++. + .
T Consensus 4 ~~~~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~---------~--~ 72 (415)
T COG0814 4 SMKKTSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNG---------K--A 72 (415)
T ss_pred cccCCcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC---------c--c
Confidence 4455678899999999999999999999999999999999999999999999999999885443211 0 2
Q ss_pred cHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhcc------CCchhhhHhHHHHHhhhhccCCCcchh
Q 012371 114 QWFEVLDGLLGKHWRNIGLFFNCTFLLFGSVIQLIACASNIYYINDN------LDKRTWTYIFGACCATTVFIPSFHNYR 187 (465)
Q Consensus 114 ~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~------~~~~~~~ii~~~v~~pl~~l~~l~~l~ 187 (465)
++.+++++.+||++++++++.+.+.+++.+++|.+..+|.+.+..++ .+++.+.+++..++.++++.++...++
T Consensus 73 ~~~~~~~~~~G~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~~~~r~~~~lif~~~~~~l~~~~~~~~lk 152 (415)
T COG0814 73 SITSLVEDYLGKKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLNPLPRKLGSLIFALVLAFLSWLGTLAVLK 152 (415)
T ss_pred cHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHHhchhHHHH
Confidence 89999999999999999999999999999999999999999876443 566777888888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccCCCcc--CCC-CchhhHhHhHHHHHHHHhcCccchHhHhhhccCCcc--chHHH
Q 012371 188 IWSFLGLIMTSFTAWYLTIASLVHGQVEGVK--HSG-PTKMVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK--FKSIY 262 (465)
Q Consensus 188 ~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~-~~~~~~~~~a~~~~~faf~~~~~v~~i~~~mk~p~~--~~~~~ 262 (465)
..+.+....+++..+... ....+-+.+... +.. +..+..+..++|+++|||++|+++|++++|||++++ .+|+.
T Consensus 153 ~ts~l~~~~v~~~~~l~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~~k~~ 231 (415)
T COG0814 153 ITSLLVFGKVIYLVLLVV-YLIPHWNPANLFALPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVRKAI 231 (415)
T ss_pred HHHHHHHHHHHHHHHHHH-HHhcccCHHHHhcccccchhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchhHHHHHHH
Confidence 999988877654433222 211111111110 111 356778899999999999999999999999998765 89999
Q ss_pred HHHHHHHHHHHHhHHHHHHHhhccccccccccccccCcccHHHHHHHHHHHHHHHHHHhhhccHH--------------H
Q 012371 263 LLATLYVLTLTLPSASAVYWAFGDMLLTHSNAFSLLPRTGFRDTAVILMLIHQFITFGFACTPLY--------------F 328 (465)
Q Consensus 263 ~~s~~~~~~~y~~~g~~gy~~fG~~~~~~~~il~~l~~~~~~~~~~~~~~i~~~~s~pl~~~p~~--------------~ 328 (465)
..+.....++|+.+++.+|..+|+.+ .++++.+.+++.-..........+...++|.+.+|.. |
T Consensus 232 ~~~~~~~~vlyi~~~~~~~~~~~~~~--~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~ 309 (415)
T COG0814 232 LIGSLIALVLYILVGFFVFGCFGSLV--FGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFLGVYLGLFE 309 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCccc--HHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHHH
Confidence 99999999999999999999999999 6799999986553333333333333345555544444 3
Q ss_pred HHHHHhcC-CCCc---chhh--HHHhhhhHHHHHHHHHHhcCCchhhHHhhhhhhhhhhHHhhhhHHHHH
Q 012371 329 VWEKFIGV-HNTK---STFK--RALARLPVVIPIWFLAIIFPFFGPINSTVGSLLVSFTVYIIPALAHMI 392 (465)
Q Consensus 329 ~~~~~~~~-~~~~---~~~~--~~~~r~~~~~~~~~~A~~vp~~~~i~~lvGs~~~~~l~~ilP~l~~l~ 392 (465)
..++.++. ++++ ..+. ........+...+.++...|+.+.+++.+|+.....+.++.|...+.+
T Consensus 310 ~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~~~~ 379 (415)
T COG0814 310 GLADLFKKSNSKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRKLIYK 379 (415)
T ss_pred hhhHHHHhccCcccchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 33333322 1111 1111 223334455666677777888777888888877666666666554433
No 9
>PRK10483 tryptophan permease; Provisional
Probab=99.93 E-value=1.9e-23 Score=208.00 Aligned_cols=340 Identities=16% Similarity=0.124 Sum_probs=248.9
Q ss_pred ccCCchhHHHHHHHhhhhhhhhchhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccH
Q 012371 36 WHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGLLSGILLQLFYGLMGSWTAYLISILYVEYRTRKEREKVDFRNHVIQW 115 (465)
Q Consensus 36 ~~~~s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y 115 (465)
+++.+.+++.+.+..+.||+|+|++|.+.++.|+++++++++++++.+.||+.+++|+..++ + ++ .++
T Consensus 8 ~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~----~-~g-------~~~ 75 (414)
T PRK10483 8 QTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNY----R-IG-------SSF 75 (414)
T ss_pred cCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----C-CC-------CCH
Confidence 45678899999999999999999999999999999999999999999999999998874332 1 11 289
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhc----cCCchhhhHhHHHHHhhhhccCC--CcchhHH
Q 012371 116 FEVLDGLLGKHWRNIGLFFNCTFLLFGSVIQLIACASNIYYIND----NLDKRTWTYIFGACCATTVFIPS--FHNYRIW 189 (465)
Q Consensus 116 ~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~----~~~~~~~~ii~~~v~~pl~~l~~--l~~l~~~ 189 (465)
..++|+.+||.|+++..+...+..++.+++|+.-.++.+++..+ +.+++.-.+++.++...+.+..+ .+++...
T Consensus 76 ~tma~~~LG~~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~~~~i~~~~~~llF~~~~~~iv~~gt~~vd~~n~~ 155 (414)
T PRK10483 76 DTITKDLLGKGWNVVNGISIAFVLYILTYAYISASGSILHHTFAEMSLNVPARAAGFGFALLVAFVVWLSTKAVSRMTAI 155 (414)
T ss_pred HHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 99999999999999999999999999999999999998877643 33445555677777777666532 3333333
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccCC---CccCCCCchhhHhHhHHHHHHHHhcCccchHhHhhhccC-CccchHHHHHH
Q 012371 190 SFLGLIMTSFTAWYLTIASLVHGQVE---GVKHSGPTKMVLYFTGATNILYTFGGHAVTVEIMHAMWK-PQKFKSIYLLA 265 (465)
Q Consensus 190 s~~~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~~~a~~~~~faf~~~~~v~~i~~~mk~-p~~~~~~~~~s 265 (465)
-+.+.+.+++. ++.....+-+.+ +.+...+..+...+.+++++++||+.|+++|++.+.+++ ++|.+|+...+
T Consensus 156 l~~~~i~~f~~---~~~~l~~~i~~~~L~~~~~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~~kir~~I~iG 232 (414)
T PRK10483 156 VLGAKVITFFL---TFGSLLGHVQPATLFNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPKTIVKCLVYG 232 (414)
T ss_pred HHHHHHHHHHH---HHHHHHhhcCHHHHhccccccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcCHHHHHHHHHHH
Confidence 33333322221 111111121111 111112233556789999999999999999999999885 57788999999
Q ss_pred HHHHHHHHHhH--HHHHHH---------hhcccccccccccccc----CcccHHHHHHHHHHHHHHHHHHhhhccHHHHH
Q 012371 266 TLYVLTLTLPS--ASAVYW---------AFGDMLLTHSNAFSLL----PRTGFRDTAVILMLIHQFITFGFACTPLYFVW 330 (465)
Q Consensus 266 ~~~~~~~y~~~--g~~gy~---------~fG~~~~~~~~il~~l----~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~ 330 (465)
..+..++|++- .+.|-. .-|++. +..+..+ ++.....+..++..+++.+||-=....++|.+
T Consensus 233 s~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni---~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l 309 (414)
T PRK10483 233 TLMALALYTIWLLATMGNIPRPEFIGIAEKGGNI---DVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYL 309 (414)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCh---HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888652 222211 122222 1111222 22345577888889999999988889999999
Q ss_pred HHHhcCCCCcchhhHHHhhhhHHHHHHHHHHhcCC-chhhHHhhhhhhhhhhHHhhhhHHHHHHhcc
Q 012371 331 EKFIGVHNTKSTFKRALARLPVVIPIWFLAIIFPF-FGPINSTVGSLLVSFTVYIIPALAHMITFAP 396 (465)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~A~~vp~-~~~i~~lvGs~~~~~l~~ilP~l~~l~~~~~ 396 (465)
.+.++.+++ ...|.....+..+++.++|...|+ |-..++..|.. ..++.-++|+++.++.||+
T Consensus 310 ~D~~k~~~~--~~~r~~~~~ltflPPl~~al~~P~~Fl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~ 373 (414)
T PRK10483 310 ADLFGFDDS--AMGRFKTALLTFLPPVVGGLLFPNGFLYAIGYAGLA-ATIWAAIVPALLARASRKR 373 (414)
T ss_pred HHHhCCCCc--cccceeeehhhHhhHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhc
Confidence 999864432 335666777889999999999996 88899999976 6777789999999999965
No 10
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.93 E-value=2.3e-23 Score=207.13 Aligned_cols=342 Identities=14% Similarity=0.076 Sum_probs=246.9
Q ss_pred ccccCCchhHHHHHHHhhhhhhhhchhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 012371 34 FFWHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGLLSGILLQLFYGLMGSWTAYLISILYVEYRTRKEREKVDFRNHVI 113 (465)
Q Consensus 34 ~~~~~~s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~ 113 (465)
+.|+|.+.+.+.+.+..++||+|+|++|.+.++.|+.+++++++++++.+.||+.++.|+..++ + ++ .
T Consensus 4 ~~~~~~~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~----~-~g-------~ 71 (415)
T PRK09664 4 QAEKKHSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNY----P-VG-------S 71 (415)
T ss_pred chhhccchhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----C-CC-------C
Confidence 4455667888999999999999999999999999999999999999999999999998874333 1 11 2
Q ss_pred cHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhc-----cCCchhhhHhHHHHHhhhhccCC--Ccch
Q 012371 114 QWFEVLDGLLGKHWRNIGLFFNCTFLLFGSVIQLIACASNIYYIND-----NLDKRTWTYIFGACCATTVFIPS--FHNY 186 (465)
Q Consensus 114 ~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~-----~~~~~~~~ii~~~v~~pl~~l~~--l~~l 186 (465)
++..++|+.+||.|+++.++...+..++.+++|+.-.++.+++..+ +.+++...+++.++..++.+..+ .+++
T Consensus 72 ~l~tma~~~LG~~g~~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~~~~i~~~~~~llF~~~~~~~v~~gt~~vd~~ 151 (415)
T PRK09664 72 SFNTITKDLIGNTWNIISGITVAFVLYILTYAYISANGAIISETISMNLGYHANPRIVGICTAIFVASVLWISSLAASRI 151 (415)
T ss_pred CHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhccCCCcHHHHHHHHHHHHHHHHHhchhHHHHH
Confidence 8999999999999999999999999999999999999999877643 23444445666677777766543 2333
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhcccCCCc-cCCCCc----hhhHhHhHHHHHHHHhcCccchHhHhhhccCC-ccchH
Q 012371 187 RIWSFLGLIMTSFTAWYLTIASLVHGQVEGV-KHSGPT----KMVLYFTGATNILYTFGGHAVTVEIMHAMWKP-QKFKS 260 (465)
Q Consensus 187 ~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~----~~~~~~~a~~~~~faf~~~~~v~~i~~~mk~p-~~~~~ 260 (465)
...-+.+.+.++. ..+.....+-+.+.. +.+.+. .....+.++|++++||+.|+++|++.+.+++. ++.+|
T Consensus 152 nr~l~~~~ii~f~---~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~~~~~k 228 (415)
T PRK09664 152 TSLFLGLKIISFV---IVFGSFFFQVDYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRKDKLIK 228 (415)
T ss_pred HHHHHHHHHHHHH---HHHHHHhhcccHHHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccHHHHHH
Confidence 3222222222211 111111111111111 111111 13457889999999999999999999998854 66788
Q ss_pred HHHHHHHHHHHHHHhH--HHHH---------HHhhcccccccccccc----ccCcccHHHHHHHHHHHHHHHHHHhhhcc
Q 012371 261 IYLLATLYVLTLTLPS--ASAV---------YWAFGDMLLTHSNAFS----LLPRTGFRDTAVILMLIHQFITFGFACTP 325 (465)
Q Consensus 261 ~~~~s~~~~~~~y~~~--g~~g---------y~~fG~~~~~~~~il~----~l~~~~~~~~~~~~~~i~~~~s~pl~~~p 325 (465)
+...+..+..++|.+- ++.| -..-|++. +.... +.+..+...+..++..+++.+||-=....
T Consensus 229 aIl~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv---~~l~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LG 305 (415)
T PRK09664 229 SVVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNV---DSLVKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLG 305 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCc---hHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877777777777432 3333 22233333 12222 22334456788888899999999888899
Q ss_pred HHHHHHHHhcCCCCcchhhHHHhhhhHHHHHHHHHHhcCC-chhhHHhhhhhhhhhhHHhhhhHHHHHHhcc
Q 012371 326 LYFVWEKFIGVHNTKSTFKRALARLPVVIPIWFLAIIFPF-FGPINSTVGSLLVSFTVYIIPALAHMITFAP 396 (465)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~A~~vp~-~~~i~~lvGs~~~~~l~~ilP~l~~l~~~~~ 396 (465)
++|.+.+.++.+++ ...|.....+..+++.++|...|+ |-..++..|.. .+++.-++|+++-++.||+
T Consensus 306 L~D~l~D~~~~~~~--~~~r~~~~~ltflPPl~~al~~P~gFl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~ 374 (415)
T PRK09664 306 LFDYLADLFKIDNS--HGGRFKTVLLTFLPPALLYLIFPNGFIYGIGGAGLC-ATIWAVIIPAVLAIKARKK 374 (415)
T ss_pred HHHHHHHHhCCCCc--cccceeeehhhHhhhHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcc
Confidence 99999999865433 345777777889999999999996 88899999996 6788889999999999975
No 11
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.92 E-value=1.2e-22 Score=204.20 Aligned_cols=343 Identities=15% Similarity=0.166 Sum_probs=243.6
Q ss_pred CCchhHHHHHHHhhhhhhhhchhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccHHH
Q 012371 38 GGSVYDAWFSCASNQVAQVLLTLPYSFSQLGLLSGILLQLFYGLMGSWTAYLISILYVEYRTRKEREKVDFRNHVIQWFE 117 (465)
Q Consensus 38 ~~s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~ 117 (465)
+.+.+++.+.+..+.+|+|+|+||++.+..|.++++++++++...++++..++.|...+.++ -.+|.+
T Consensus 2 ~~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~------------~~~~~~ 69 (394)
T PF03222_consen 2 NNSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPE------------GSSLTS 69 (394)
T ss_pred CchHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC------------CCCHHH
Confidence 45788999999999999999999999999999999999999999999999999877533211 139999
Q ss_pred HHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhcc-----CCchhhhHhHHHHHhhhhccCC--CcchhHHH
Q 012371 118 VLDGLLGKHWRNIGLFFNCTFLLFGSVIQLIACASNIYYINDN-----LDKRTWTYIFGACCATTVFIPS--FHNYRIWS 190 (465)
Q Consensus 118 l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~-----~~~~~~~ii~~~v~~pl~~l~~--l~~l~~~s 190 (465)
++++.+||+++++..+...+..++.+++|..-.++.+.++.+. .+++.-.+++.++...+.+..+ .++....-
T Consensus 70 ~a~~~lG~~g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~~~~~~~~~~~~f~~i~~~iv~~g~~~v~~~n~~l 149 (394)
T PF03222_consen 70 MAEKYLGKKGGIVIGISYLFLLYALLVAYISGGGSILSSLLGNQLGTDLSPWLSSLLFTIIFGGIVYFGTKAVDRINRVL 149 (394)
T ss_pred HHHHHhChHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999888776432 2334333444444444333321 22222222
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccCCCcc--CCCCchhhHhHhHHHHHHHHhcCccchHhHhhhccC-CccchHHHHHHHH
Q 012371 191 FLGLIMTSFTAWYLTIASLVHGQVEGVK--HSGPTKMVLYFTGATNILYTFGGHAVTVEIMHAMWK-PQKFKSIYLLATL 267 (465)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~a~~~~~faf~~~~~v~~i~~~mk~-p~~~~~~~~~s~~ 267 (465)
....+..+. .+....+.+-+.+... +..+.++...+.++|+.++||+.|+.+|++.+.+++ ++|.+|+...+..
T Consensus 150 v~~~i~~~~---~l~~~~~p~~~~~~L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~ai~~Gs~ 226 (394)
T PF03222_consen 150 VFGMIISFI---ILVVYLIPHWNPSNLLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKIRKAIIIGSL 226 (394)
T ss_pred HHHHHHHHH---HHHHHHhhhcCHHHhhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHHHHHHHHHHH
Confidence 222221111 1111112111111111 123466788899999999999999999999999984 5778888888888
Q ss_pred HHHHHHHhH--HHHH---------HHhhccccccccccccccC-cccHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHhc
Q 012371 268 YVLTLTLPS--ASAV---------YWAFGDMLLTHSNAFSLLP-RTGFRDTAVILMLIHQFITFGFACTPLYFVWEKFIG 335 (465)
Q Consensus 268 ~~~~~y~~~--g~~g---------y~~fG~~~~~~~~il~~l~-~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~ 335 (465)
+..++|++. .+.| -..-|++..+-...+.+.. ++....+..++-.+++.+||-=....++|.+++.++
T Consensus 227 i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~k 306 (394)
T PF03222_consen 227 IPLVMYLLWVFSILGSLPREQFAEAIAQGGNVSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLADLFK 306 (394)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 777777543 3333 1111211100011223332 334567789999999999998888999999999886
Q ss_pred CCCCcchhhHHHhhhhHHHHHHHHHHhcCC-chhhHHhhhhhhhhhhHHhhhhHHHHHHhcchh
Q 012371 336 VHNTKSTFKRALARLPVVIPIWFLAIIFPF-FGPINSTVGSLLVSFTVYIIPALAHMITFAPAA 398 (465)
Q Consensus 336 ~~~~~~~~~~~~~r~~~~~~~~~~A~~vp~-~~~i~~lvGs~~~~~l~~ilP~l~~l~~~~~~~ 398 (465)
.++ +...|........+++.++|...|+ |...+++.| ....++..++|+++.++.|++++
T Consensus 307 ~~~--~~~~r~~~~~ltf~ppl~~a~~~p~~F~~al~~aG-~~~~il~~ilP~~m~~~~r~~~~ 367 (394)
T PF03222_consen 307 LKN--NSSGRLKTWLLTFLPPLIFALLFPNGFLIALGYAG-IGIAILLGILPALMVWKARKRKP 367 (394)
T ss_pred CCc--cccchHHHHHHHHHhHHHHHHHCcHHHHHHHHhhc-HHHHHHHHHHHHHHHHHHHcccC
Confidence 522 2345666667778889999999994 889999999 89999999999999999887664
No 12
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.92 E-value=4.8e-23 Score=208.02 Aligned_cols=336 Identities=15% Similarity=0.064 Sum_probs=241.0
Q ss_pred HHHHhhhhhhhhchhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccHHHHHHHhhch
Q 012371 46 FSCASNQVAQVLLTLPYSFSQLGLLSGILLQLFYGLMGSWTAYLISILYVEYRTRKEREKVDFRNHVIQWFEVLDGLLGK 125 (465)
Q Consensus 46 ~~l~~~~iG~GiL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~G~ 125 (465)
....++++|+|++++|.++++.|..++++.+++.++.+.++..++.+.. .+.|++ .++.+++++++||
T Consensus 4 ~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~----~~~p~~--------~~~~~~~~~~~G~ 71 (381)
T TIGR00837 4 LIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVY----LTYPGG--------ASFNTIAKDLLGK 71 (381)
T ss_pred EEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCCCC--------CCHHHHHHHHhCH
Confidence 4567899999999999999999999999999999999999999997764 333311 2899999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhc-----cCCchhhhHhHHHHHhhhhccCCCcchhHHHHHHHHHHHHH
Q 012371 126 HWRNIGLFFNCTFLLFGSVIQLIACASNIYYIND-----NLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLIMTSFT 200 (465)
Q Consensus 126 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~-----~~~~~~~~ii~~~v~~pl~~l~~l~~l~~~s~~~~~~~~~~ 200 (465)
+++++..+...+.++..+++|....++.+..+.+ ..+.+.+.+++.+++.++.. +..+...+++.+.+...+..
T Consensus 72 ~~g~~~~~~~~~~~~~~~~ay~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~-~G~~~~~~v~~i~~~~~l~~ 150 (381)
T TIGR00837 72 TGNIIAGLSLLFVLYILTYAYISGGGSILSRLIGEYFGFPWSARAIVLIFTVLFGSFVW-LSTSAVDRITRVLIFGKIIA 150 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988877765433 22333333334444444443 34566666666555444322
Q ss_pred HHHHHHhhhhcccCCCccC--CCCchhhHhHhHHHHHHHHhcCccchHhHhhhcc-CCccchHHHHHHHHHHHHHHHhHH
Q 012371 201 AWYLTIASLVHGQVEGVKH--SGPTKMVLYFTGATNILYTFGGHAVTVEIMHAMW-KPQKFKSIYLLATLYVLTLTLPSA 277 (465)
Q Consensus 201 ~~~~~~~~~~~g~~~~~~~--~~~~~~~~~~~a~~~~~faf~~~~~v~~i~~~mk-~p~~~~~~~~~s~~~~~~~y~~~g 277 (465)
.+.+++....+.+.++..+ ..+..+.+++.+++...++|++|.+++++.++++ +++|.+|+...+..+++++|+.+.
T Consensus 151 l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~~k~i~raii~g~~i~~~lY~l~~ 230 (381)
T TIGR00837 151 FALVFSGLLPHVKGDLLLDVALDTSYWPYILSALPVCLTSFGFHGNVPSLYKYYDGNVKKVKKSILIGSAIALVLYILWQ 230 (381)
T ss_pred HHHHHHHHHhhccHHHHhcCccccccHHHHHHHHHHHHHHHHcccccHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222222111111 1123556788999999999999999999999997 556788999999999999998776
Q ss_pred HHHHHhhcccccc-----c---cc---cccc-cCcccHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHhcCCCCcchhhH
Q 012371 278 SAVYWAFGDMLLT-----H---SN---AFSL-LPRTGFRDTAVILMLIHQFITFGFACTPLYFVWEKFIGVHNTKSTFKR 345 (465)
Q Consensus 278 ~~gy~~fG~~~~~-----~---~~---il~~-l~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~ 345 (465)
.......+.+.-. . +. ...+ ++..+...++..+..+++..|+.-...+.+|.+.+.++++++ +.+|
T Consensus 231 ~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~~~--~~~~ 308 (381)
T TIGR00837 231 LATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLADLFKFDDS--KKGR 308 (381)
T ss_pred HHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc--cCCC
Confidence 6555554433210 0 11 1111 233345577888889999999999999999998888864332 2236
Q ss_pred HHhhhhHHHHHHHHHHhcCCch-hhHHhhhhhhhhhhHHhhhhHHHHHHhcch
Q 012371 346 ALARLPVVIPIWFLAIIFPFFG-PINSTVGSLLVSFTVYIIPALAHMITFAPA 397 (465)
Q Consensus 346 ~~~r~~~~~~~~~~A~~vp~~~-~i~~lvGs~~~~~l~~ilP~l~~l~~~~~~ 397 (465)
+....+..+++.++|.+.|+.. ..++..| +++..+.+++|++++++.||++
T Consensus 309 ~~~~~~~~~~pl~~a~~~p~~~~~~l~~~G-~~~~~~~~~~p~l~~~~~r~~~ 360 (381)
T TIGR00837 309 FKTGLLTFLPPLVFALFYPEGFLYAIGYAG-LAATIWAVIIPALLAWKARKKF 360 (381)
T ss_pred chhhhhhHHhHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcC
Confidence 6667777889999999999766 8999999 8899999999999999988654
No 13
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.91 E-value=1.1e-21 Score=196.22 Aligned_cols=339 Identities=13% Similarity=0.116 Sum_probs=237.1
Q ss_pred chhHHHHHHHhhhhhhhhchhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccHHHHH
Q 012371 40 SVYDAWFSCASNQVAQVLLTLPYSFSQLGLLSGILLQLFYGLMGSWTAYLISILYVEYRTRKEREKVDFRNHVIQWFEVL 119 (465)
Q Consensus 40 s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~l~ 119 (465)
+.+++.+.+..+.+|+|+|++|.+.+..|.+++++++++++.+..|+++++.|+.. +.+ ++ .++.+++
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~----~~~-~~-------~~~~~~a 71 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQ----HVP-AD-------TGLGTLA 71 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCC-CC-------CCHHHHH
Confidence 67889999999999999999999999999999999999999999999999987532 211 11 2899999
Q ss_pred HHhhchhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhc-----cCCchhhhHhHHHHHhhhhccCC--CcchhHHHHH
Q 012371 120 DGLLGKHWRNIGLFFNCTFLLFGSVIQLIACASNIYYIND-----NLDKRTWTYIFGACCATTVFIPS--FHNYRIWSFL 192 (465)
Q Consensus 120 ~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~-----~~~~~~~~ii~~~v~~pl~~l~~--l~~l~~~s~~ 192 (465)
++.+||+|+++..+...+..+..+++|..-.++.+.+... +.+...+.+++.++.....+..+ .++....-..
T Consensus 72 ~~~LG~~g~~i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~~i~~~~~~l~F~~~~~~iv~~g~~~v~~~n~~L~~ 151 (403)
T PRK15132 72 KRYLGRYGQWLTGFSMMFLMYALTAAYISGAGELLASSISDWTGISMSPTAGVLLFTLVAGGVVCVGTSSVDLFNRFLFS 151 (403)
T ss_pred HHHhChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998777755432 23444455555544444444322 2222222222
Q ss_pred HHHHHHHHHHHHHHhhhhcccCCCccCCCCchhhHhHhHHHHHHHHhcCccchHhHhhhccCC-ccchHHHHHHHHHHHH
Q 012371 193 GLIMTSFTAWYLTIASLVHGQVEGVKHSGPTKMVLYFTGATNILYTFGGHAVTVEIMHAMWKP-QKFKSIYLLATLYVLT 271 (465)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~v~~i~~~mk~p-~~~~~~~~~s~~~~~~ 271 (465)
..+..+. .+......+-+.+.....++ +....+.+++++.+||+.|+.+|++.+.+++. +|.+|+..++..+..+
T Consensus 152 ~~ii~~~---~~~~~l~p~~~~~~L~~~~~-~~~~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~~k~i~~Gs~i~li 227 (403)
T PRK15132 152 AKIIFLV---VMLALMMPHIHKVNLLTLPL-QQGLALSAIPVIFTSFGFHGSVPSIVSYMGGNIRKLRWVFIIGSAIPLV 227 (403)
T ss_pred HHHHHHH---HHHHHHHHhcCHHHHhcCCc-cccHHHHHHHHHHHHhhCCcccHHHHHHhCcCHHHHHHHHHHHHHHHHH
Confidence 2222211 11111111111111111011 11247889999999999999999999999854 6778999888888888
Q ss_pred HHHhHHHHHHHhhcccc-----ccc---ccccccc----CcccHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHhcCCCC
Q 012371 272 LTLPSASAVYWAFGDML-----LTH---SNAFSLL----PRTGFRDTAVILMLIHQFITFGFACTPLYFVWEKFIGVHNT 339 (465)
Q Consensus 272 ~y~~~g~~gy~~fG~~~-----~~~---~~il~~l----~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~ 339 (465)
+|+.-=......-+.+. +++ ++++..+ +.++...++.++..+++.+||-=....++|.+.+.++.+++
T Consensus 228 ~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~~~~ 307 (403)
T PRK15132 228 AYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQRRNT 307 (403)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcc
Confidence 77644322222222211 001 1233333 23456678888889999999988889999999998864332
Q ss_pred cchhhHHHhhhhHHHHHHHHHHhcCC-chhhHHhhhhhhhhhhHHhhhhHHHHHHhcch
Q 012371 340 KSTFKRALARLPVVIPIWFLAIIFPF-FGPINSTVGSLLVSFTVYIIPALAHMITFAPA 397 (465)
Q Consensus 340 ~~~~~~~~~r~~~~~~~~~~A~~vp~-~~~i~~lvGs~~~~~l~~ilP~l~~l~~~~~~ 397 (465)
...|.....+..++++++|...|+ |...+++.|. ....+.+++|+++.++.||++
T Consensus 308 --~~~r~~~~~l~flppli~a~~~P~~F~~al~~aG~-~~ail~~ilP~~m~~~~r~~~ 363 (403)
T PRK15132 308 --VGGRLQTGLITFLPPLAFALFYPRGFVMALGYAGV-ALAVLALLLPSLLVWQSRKQN 363 (403)
T ss_pred --ccCCchhehhhHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcC
Confidence 334777788889999999999995 8889999886 478999999999999988653
No 14
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.84 E-value=4.4e-18 Score=169.62 Aligned_cols=335 Identities=11% Similarity=0.081 Sum_probs=223.4
Q ss_pred HHHHHhhhhhhhhchhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccHHHHHHHhhc
Q 012371 45 WFSCASNQVAQVLLTLPYSFSQLGLLSGILLQLFYGLMGSWTAYLISILYVEYRTRKEREKVDFRNHVIQWFEVLDGLLG 124 (465)
Q Consensus 45 ~~~l~~~~iG~GiL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~G 124 (465)
.+.+..+.+|+|+|+||......|.++.+++++++..+++++...+.|.....+ + ++ .++.+++++.+|
T Consensus 25 ~l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~---~-~~-------~~i~~v~~~~lG 93 (443)
T PRK13629 25 TLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGS---N-PS-------GNITETVEEHFG 93 (443)
T ss_pred HHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccC---C-CC-------CCHHHHHHHHcC
Confidence 378999999999999999999999999999999999999999999987632211 1 12 389999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh-----hc-cCCchhhhHhHHHHHhhhhccCC--CcchhHHHHHHHHH
Q 012371 125 KHWRNIGLFFNCTFLLFGSVIQLIACASNIYYI-----ND-NLDKRTWTYIFGACCATTVFIPS--FHNYRIWSFLGLIM 196 (465)
Q Consensus 125 ~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~-----~~-~~~~~~~~ii~~~v~~pl~~l~~--l~~l~~~s~~~~~~ 196 (465)
|+|+.+..+..++..+..+.+|.....+.+... .. +.++....+++..++....+..+ ..+....-+...+.
T Consensus 94 ~~g~~i~~ilYff~ly~ll~aY~~~itn~l~sfl~~ql~~~~~~r~l~slifv~~l~~iv~~G~~~v~kv~~~Lv~~~i~ 173 (443)
T PRK13629 94 KTGGVVITFLYFFAICPLLWIYGVTITNTFMTFWENQLGFAPLNRGFVALFLLLLMAFVIWFGKDLMVKVMSYLVWPFIA 173 (443)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998777766542 11 23444444555444444444322 23322222223322
Q ss_pred HHHHHHHHHHhhhhcccCC---Ccc----CC--CCchhhHhHhHHHHHHHHhcCccchHhHhhh----cc-----C--Cc
Q 012371 197 TSFTAWYLTIASLVHGQVE---GVK----HS--GPTKMVLYFTGATNILYTFGGHAVTVEIMHA----MW-----K--PQ 256 (465)
Q Consensus 197 ~~~~~~~~~~~~~~~g~~~---~~~----~~--~~~~~~~~~~a~~~~~faf~~~~~v~~i~~~----mk-----~--p~ 256 (465)
++.. +.+..+.+=+.+ +.+ +. ........+.++|+++|||+.|+.+|++... ++ + ++
T Consensus 174 ~l~~---l~~~LiP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~ 250 (443)
T PRK13629 174 SLVL---ISLSLIPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTER 250 (443)
T ss_pred HHHH---HHHHHHHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHH
Confidence 2211 111111111111 111 00 1111245788999999999999999999888 43 2 34
Q ss_pred cchHHHHHHHHHHHHHHHhHHHHHHHhhccccc-----cccccccc----cCc---------ccHHHHHHHHHHHHHHHH
Q 012371 257 KFKSIYLLATLYVLTLTLPSASAVYWAFGDMLL-----THSNAFSL----LPR---------TGFRDTAVILMLIHQFIT 318 (465)
Q Consensus 257 ~~~~~~~~s~~~~~~~y~~~g~~gy~~fG~~~~-----~~~~il~~----l~~---------~~~~~~~~~~~~i~~~~s 318 (465)
|.+|+...+..+..++|+..-+..-..-+++.- .+.+++.. +++ +.......++..+++..|
T Consensus 251 k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TS 330 (443)
T PRK13629 251 KCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKS 330 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHH
Confidence 556788888887777776655554444443321 01222222 232 224566777778899999
Q ss_pred HHhhhccHHHHHHHHhc----CC-CC--cchhhHHHhhhhHHHHHHHHHHhcCCchhhHHhhhhhhhhhhHHhhhhHHHH
Q 012371 319 FGFACTPLYFVWEKFIG----VH-NT--KSTFKRALARLPVVIPIWFLAIIFPFFGPINSTVGSLLVSFTVYIIPALAHM 391 (465)
Q Consensus 319 ~pl~~~p~~~~~~~~~~----~~-~~--~~~~~~~~~r~~~~~~~~~~A~~vp~~~~i~~lvGs~~~~~l~~ilP~l~~l 391 (465)
|-=....++|.++.+.. ++ ++ ..+..+......+.+.+++++..-|++-.+++-+|+-....+.|++|.....
T Consensus 331 FlGv~LGl~E~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~np~il~~i~~~~gPiia~il~l~P~y~i~ 410 (443)
T PRK13629 331 FFGHYLGTLEGLNGLILKFGYKGDKTKVSLGKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIR 410 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 98888889988777662 11 11 2233456666778889999999999999999977777778888999987755
Q ss_pred HH
Q 012371 392 IT 393 (465)
Q Consensus 392 ~~ 393 (465)
|.
T Consensus 411 kv 412 (443)
T PRK13629 411 KA 412 (443)
T ss_pred cc
Confidence 54
No 15
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.77 E-value=6.1e-16 Score=155.35 Aligned_cols=340 Identities=10% Similarity=0.031 Sum_probs=221.9
Q ss_pred HHHHHHHhhhhhhhhchhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccHHHHHHHh
Q 012371 43 DAWFSCASNQVAQVLLTLPYSFSQLGLLSGILLQLFYGLMGSWTAYLISILYVEYRTRKEREKVDFRNHVIQWFEVLDGL 122 (465)
Q Consensus 43 ~a~~~l~~~~iG~GiL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~ 122 (465)
+=.+.+..+++|+|+|++|...++.||++.++..++...+++++..++.+.. ..++. |+ .++.|+.++.
T Consensus 7 ~w~~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~--l~~~~--p~-------~~i~~~~~~~ 75 (397)
T TIGR00814 7 GWMLGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFL--LSSKN--PC-------EDITEVVEEH 75 (397)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCC--CC-------CCHHHHHHHH
Confidence 3457789999999999999999999999888888888888888888887653 12221 12 3899999999
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhc-----cCCchhhhHhHHHHHhhhhccCCCcchhHHHHHHHHHH
Q 012371 123 LGKHWRNIGLFFNCTFLLFGSVIQLIACASNIYYIND-----NLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLIMT 197 (465)
Q Consensus 123 ~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~-----~~~~~~~~ii~~~v~~pl~~l~~l~~l~~~s~~~~~~~ 197 (465)
|||+++.+..+...++.+..+.+|....++.+..+.. +.+.+....+..++.+-.......+.+.+++-+-....
T Consensus 76 fGk~~G~ii~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~~~~p~~~i~~lilv~il~~iv~~G~~~i~r~~~il~~~~ 155 (397)
T TIGR00814 76 FGKNWGILITLLYFFAIYPILLIYSVAITNDSASFLVNQLGTAPPLRGLLSLALILILVAIMSFGEKLLFKIMGPLVFPL 155 (397)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999887777654421 22223222222222212222223444444444333222
Q ss_pred HHHHHHHHHhhhhcccCCCcc--CCCCchhhHhHhHHHHHHHHhcCccchHhHhh----hccC----CccchHHHHHHHH
Q 012371 198 SFTAWYLTIASLVHGQVEGVK--HSGPTKMVLYFTGATNILYTFGGHAVTVEIMH----AMWK----PQKFKSIYLLATL 267 (465)
Q Consensus 198 ~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~a~~~~~faf~~~~~v~~i~~----~mk~----p~~~~~~~~~s~~ 267 (465)
+.....+.+..+.+-+.+... +.....+.++..+++..++||.+|+.+|++.. +.++ ++|.+|+...+..
T Consensus 156 ii~l~~l~~~lip~~~~~~L~~~p~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~ 235 (397)
T TIGR00814 156 VLILVLLSLYLIPHWNGANLTTFPSFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASL 235 (397)
T ss_pred HHHHHHHHHHHHHHcCHHHHhcCCcccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHH
Confidence 221112222222222211111 11112356789999999999999999999973 3442 2455778888888
Q ss_pred HHHHHHHhHHHHHHHhhcccccc---ccc--ccc----ccCcccHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHhc---
Q 012371 268 YVLTLTLPSASAVYWAFGDMLLT---HSN--AFS----LLPRTGFRDTAVILMLIHQFITFGFACTPLYFVWEKFIG--- 335 (465)
Q Consensus 268 ~~~~~y~~~g~~gy~~fG~~~~~---~~~--il~----~l~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~--- 335 (465)
+.+++|+..-+......+++... ++| .+. ..+.+....+..++..+++..||--....++|.+++.+.
T Consensus 236 i~~~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~~~~ 315 (397)
T TIGR00814 236 ILVATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVLNSL 315 (397)
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 88877776655555555543310 112 222 123334456677777888999988888889998888761
Q ss_pred -CCCC--cchhhHHHhhhhHHHHHHHHHHhcCCchhhHHhhhhhhhhhhHHhhhhHHHHHH
Q 012371 336 -VHNT--KSTFKRALARLPVVIPIWFLAIIFPFFGPINSTVGSLLVSFTVYIIPALAHMIT 393 (465)
Q Consensus 336 -~~~~--~~~~~~~~~r~~~~~~~~~~A~~vp~~~~i~~lvGs~~~~~l~~ilP~l~~l~~ 393 (465)
.+++ +++..+......+.+.++++|..-|++-.+++-+|+-.-..+.|++|...-.|.
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~il~~i~~~~gp~~a~i~~~~p~~~~~~v 376 (397)
T TIGR00814 316 KMKGKKINIRKLNRAIAIFIVLTTWIVAYINPSILSFIEALGGPIIAMILFLMPMYAIYKV 376 (397)
T ss_pred cccccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhHHHHHHHHHHHHHHHHHcc
Confidence 1111 223345566677888999999999999999997777777888888998765554
No 16
>PRK10249 phenylalanine transporter; Provisional
Probab=99.60 E-value=4.5e-12 Score=131.06 Aligned_cols=228 Identities=11% Similarity=0.046 Sum_probs=136.3
Q ss_pred cccCCchhHHHHHHHhhhhhhhhchhHH-HHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 012371 35 FWHGGSVYDAWFSCASNQVAQVLLTLPY-SFSQLGLLSGILLQLFYGLMGSWTAYLISILYVEYRTRKEREKVDFRNHVI 113 (465)
Q Consensus 35 ~~~~~s~~~a~~~l~~~~iG~GiL~lP~-a~~~~G~~~g~i~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~ 113 (465)
.+++.+.++..+..+++++|+|++..|- +.+++|-. .++..++.+++....... ..|...+.|.+|
T Consensus 19 l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp~-~~l~~li~~~~~~~~~~~----~aEl~~~~P~~G-------- 85 (458)
T PRK10249 19 LHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGPA-VLLGYGVAGIIAFLIMRQ----LGEMVVEEPVSG-------- 85 (458)
T ss_pred hhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCcH-HHHHHHHHHHHHHHHHHH----HHHHHHhCCCCC--------
Confidence 4456677889999999999999988775 45667853 555556666666554444 456677766555
Q ss_pred cHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCchhhhHhHHHHHhhhhccCCCcchhHHHHHH
Q 012371 114 QWFEVLDGLLGKHWRNIGLFFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLG 193 (465)
Q Consensus 114 ~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~ii~~~v~~pl~~l~~l~~l~~~s~~~ 193 (465)
+..+.+++.+|+...+++.+..++.......+.....+..++.+.++.+...+..+...+.. ....+..+..+.+....
T Consensus 86 g~~~y~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~-~lN~~gv~~~~~i~~~~ 164 (458)
T PRK10249 86 SFAHFAYKYWGPFAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWFPDVPTWIWAAAFFIIIN-AVNLVNVRLYGETEFWF 164 (458)
T ss_pred CHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCcHHHHHHHHHHHHH-HHHHhcchhhhhHHHHH
Confidence 66778899999999999988766655544445554455555555443322222222211111 12222333333332222
Q ss_pred HHHHH---HHHHHHHHhhhhcccC---CCcc----C--CCCchhhHhHhHHHHHHHHhcCccchHhHhhhccCCcc-chH
Q 012371 194 LIMTS---FTAWYLTIASLVHGQV---EGVK----H--SGPTKMVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKS 260 (465)
Q Consensus 194 ~~~~~---~~~~~~~~~~~~~g~~---~~~~----~--~~~~~~~~~~~a~~~~~faf~~~~~v~~i~~~mk~p~~-~~~ 260 (465)
.+.-+ ...+.+.+.....+.. .+.+ + ..+..+.++..++....|+|.|-..+....+|+|||+| .+|
T Consensus 165 ~~ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P~k~iPr 244 (458)
T PRK10249 165 ALIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEARDPEKSIPK 244 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCHhhHHHH
Confidence 11111 1100110111111111 1111 1 01345567788999999999999999999999999976 689
Q ss_pred HHHHHHHHHHHHHHhH
Q 012371 261 IYLLATLYVLTLTLPS 276 (465)
Q Consensus 261 ~~~~s~~~~~~~y~~~ 276 (465)
+...++..+.++|+..
T Consensus 245 ai~~~~~~~~~~y~~~ 260 (458)
T PRK10249 245 AVNQVVYRILLFYIGS 260 (458)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9888888888888664
No 17
>PRK10655 potE putrescine transporter; Provisional
Probab=99.60 E-value=3.6e-12 Score=131.28 Aligned_cols=231 Identities=14% Similarity=0.021 Sum_probs=136.3
Q ss_pred ccCCchhHHHHHHHhhhhhhhhchhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccH
Q 012371 36 WHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGLLSGILLQLFYGLMGSWTAYLISILYVEYRTRKEREKVDFRNHVIQW 115 (465)
Q Consensus 36 ~~~~s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y 115 (465)
+++.+.+++....+++++|+|++.+|..+++.|- .+++..++.+++.......+ .|...+.|++| ..
T Consensus 5 ~~~l~~~~~~~l~vg~~iGsGif~~p~~~~~~G~-~~~~~w~i~~~~~~~~a~~~----aeL~~~~P~~G--------G~ 71 (438)
T PRK10655 5 SNKMGVVQLTILTAVNMMGSGIIMLPTKLAQVGT-ISILSWLVTAVGSMALAYAF----AKCGMFSRKSG--------GM 71 (438)
T ss_pred cCcccHHHHHHHHHHhhhhhHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHHHHH----HHHhhhCCCCC--------ch
Confidence 4567889999999999999999999999888886 35666666666665555544 45556665544 44
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccC-CchhhhHhHHHHHhhhhccCCCcchhHHHHHHH
Q 012371 116 FEVLDGLLGKHWRNIGLFFNCTFLLFGSVIQLIACASNIYYINDNL-DKRTWTYIFGACCATTVFIPSFHNYRIWSFLGL 194 (465)
Q Consensus 116 ~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~-~~~~~~ii~~~v~~pl~~l~~l~~l~~~s~~~~ 194 (465)
....++.+||...++..+..++.......+......+.+..+.+.. +.....++..+++..+..+ |....+..+.+..
T Consensus 72 y~y~~~~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~l-n~~g~~~~~~i~~ 150 (438)
T PRK10655 72 GGYAEYAFGKSGNFMANYTYGVSLLIANVAIAISAVGYGTELFGATLSPVQICLATIGVLWLCTVA-NFGGARITGQISS 150 (438)
T ss_pred HHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH-HHhCHHHHHHHHH
Confidence 5667788999998888887655444433333332333333332211 1111111212222222221 3333333333333
Q ss_pred HHH---HHHHHHHHHhhhhcccCCCc----cCCCCchhhHhHhHHHHHHHHhcCccchHhHhhhccCCc-cchHHHHHHH
Q 012371 195 IMT---SFTAWYLTIASLVHGQVEGV----KHSGPTKMVLYFTGATNILYTFGGHAVTVEIMHAMWKPQ-KFKSIYLLAT 266 (465)
Q Consensus 195 ~~~---~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~~~a~~~~~faf~~~~~v~~i~~~mk~p~-~~~~~~~~s~ 266 (465)
+.+ +...+.+.+......+.++. ++.....+.++..++....|+|.|-.....+-+|+|||+ +.+|+...+.
T Consensus 151 i~~~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi~~~~ 230 (438)
T PRK10655 151 VTVWGVIIPVVGLSIIGWFWFSPSLYVAAWNPHHLPFFSAVGSSIAMTLWAFLGLESACANSDAVENPERNVPIAVLGGT 230 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcccccCCcCccCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCccccccHHHHHHH
Confidence 222 11111111111111111111 111112234667778889999999999999999999997 5799999999
Q ss_pred HHHHHHHHhHHHHH
Q 012371 267 LYVLTLTLPSASAV 280 (465)
Q Consensus 267 ~~~~~~y~~~g~~g 280 (465)
..+.++|++.....
T Consensus 231 ~~~~~~Y~l~~~~~ 244 (438)
T PRK10655 231 LGAAVIYIVSTNVI 244 (438)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998765443
No 18
>TIGR00909 2A0306 amino acid transporter.
Probab=99.58 E-value=9.5e-12 Score=127.79 Aligned_cols=344 Identities=9% Similarity=-0.049 Sum_probs=188.9
Q ss_pred ccCCchhHHHHHHHhhhhhhhhchhHHHHHh-hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccc
Q 012371 36 WHGGSVYDAWFSCASNQVAQVLLTLPYSFSQ-LGLLSGILLQLFYGLMGSWTAYLISILYVEYRTRKEREKVDFRNHVIQ 114 (465)
Q Consensus 36 ~~~~s~~~a~~~l~~~~iG~GiL~lP~a~~~-~G~~~g~i~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 114 (465)
+++.+.++.++..+++++|+|++.+|..... .|.. .++..++.++........+ .|..++.|++| +
T Consensus 2 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~-~~l~~li~~~~~~~~a~~~----~el~~~~p~~G--------g 68 (429)
T TIGR00909 2 SRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGPA-VILSFVLAGLTALFIALVY----AELAAMLPVAG--------S 68 (429)
T ss_pred CccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCCH-HHHHHHHHHHHHHHHHHHH----HHHHhhcCCCC--------c
Confidence 4567889999999999999999999966544 5542 3444555566555544444 55566665444 3
Q ss_pred HHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhc----cCCchhh---------hHh--HHHHHhhhhc
Q 012371 115 WFEVLDGLLGKHWRNIGLFFNCTFLLFGSVIQLIACASNIYYIND----NLDKRTW---------TYI--FGACCATTVF 179 (465)
Q Consensus 115 y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~----~~~~~~~---------~ii--~~~v~~pl~~ 179 (465)
..+..++.+||+.+++..+...+.....+..+....++.+..+.+ +.+...+ .+. ...+.+-+..
T Consensus 69 ~y~~~~~~~G~~~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~ 148 (429)
T TIGR00909 69 PYTYAYEAMGELTAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDLPAVLTAKPGNGGVFNLPALLIVLFLTYIL 148 (429)
T ss_pred ceeeHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhhhcCCcccccccHHHHHHHHHHHHHH
Confidence 445667789999999888887776665666666555665554432 1111111 011 1111222223
Q ss_pred cCCCcchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCccCCCCchhhHhHhHHHHHHHHhcCccchHhHhhhccCCc-cc
Q 012371 180 IPSFHNYRIWSFLGLIMTSFTAWYLTIASLVHGQVEGVKHSGPTKMVLYFTGATNILYTFGGHAVTVEIMHAMWKPQ-KF 258 (465)
Q Consensus 180 l~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~v~~i~~~mk~p~-~~ 258 (465)
.+..+...+++.+.....+...+.+.+....+.+.++.++..+.+...+..++....|+|.|........+|+|||+ +.
T Consensus 149 ~~g~~~~~~~~~v~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r~i 228 (429)
T TIGR00909 149 YLGAKESGKVNDILVVLKVAALLLFAALGAIHFASNNYTPFMPMGFGGVGAATALVFFAFIGFEAISTAAEEVKNPERDI 228 (429)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHhhhHHHhhCcHHhcCCCCCCcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCccccc
Confidence 34455555555554443332221222222222222222222334556778888999999999999999999999995 47
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHhhccccccc-c----ccccccCcccHHHHHHHHHHHHHHHHHHhhhccHHHHHHHH
Q 012371 259 KSIYLLATLYVLTLTLPSASAVYWAFGDMLLTH-S----NAFSLLPRTGFRDTAVILMLIHQFITFGFACTPLYFVWEKF 333 (465)
Q Consensus 259 ~~~~~~s~~~~~~~y~~~g~~gy~~fG~~~~~~-~----~il~~l~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~ 333 (465)
+|+...++..+.++|+..........+.+...+ + .+......++...+..+..+++.+.+.--.....-+.+...
T Consensus 229 p~ai~~~~~~~~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~ 308 (429)
T TIGR00909 229 PKAIILSLIVVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVGYDLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAM 308 (429)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhcCcCHHHhCCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999877654443222111000 0 11111222334445566666666666544443332222222
Q ss_pred ---------hcC-CCCcchhhHHHhhhhHHHHHHHHHHhcCCchhhHHhhhhhhhhhhHHhhhhHHHHHHhcch
Q 012371 334 ---------IGV-HNTKSTFKRALARLPVVIPIWFLAIIFPFFGPINSTVGSLLVSFTVYIIPALAHMITFAPA 397 (465)
Q Consensus 334 ---------~~~-~~~~~~~~~~~~r~~~~~~~~~~A~~vp~~~~i~~lvGs~~~~~l~~ilP~l~~l~~~~~~ 397 (465)
+++ |++.+.+.+-+.-.. .++.++ ....+++.+.++.+ .+..+.|++.++..++.||++
T Consensus 309 a~dg~lP~~~~~~~~~~~~P~~a~~~~~--~i~~~~-~~~~~~~~l~~~~~--~~~~~~y~~~~~a~~~lr~~~ 377 (429)
T TIGR00909 309 SRDGLLPGSLSKVHPKTGTPHMSIIIFS--LTAALL-ASLVPLEGLAELTS--IGTLIAFAAVNVAVIILRRRR 377 (429)
T ss_pred HcCCCCcHHHHHcCCCCCCcHHHHHHHH--HHHHHH-HHHcCHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhc
Confidence 111 212222222111111 111111 22345666666543 344677887777777777654
No 19
>PRK15049 L-asparagine permease; Provisional
Probab=99.57 E-value=1.7e-11 Score=127.95 Aligned_cols=349 Identities=11% Similarity=0.061 Sum_probs=179.1
Q ss_pred ccccCCchhHHHHHHHhhhhhhhhchhHH-HHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccc
Q 012371 34 FFWHGGSVYDAWFSCASNQVAQVLLTLPY-SFSQLGLLSGILLQLFYGLMGSWTAYLISILYVEYRTRKEREKVDFRNHV 112 (465)
Q Consensus 34 ~~~~~~s~~~a~~~l~~~~iG~GiL~lP~-a~~~~G~~~g~i~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~~~~~~~~ 112 (465)
..+++.+.++..+..+.++||+|++..|. +.+++|- .+++..++.+++....... +.|+..+.|.+|
T Consensus 25 ~l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp-~~il~~li~~i~~~~v~~s----laELas~~P~aG------- 92 (499)
T PRK15049 25 GYHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGP-ALALVYLICGLFSFFILRA----LGELVLHRPSSG------- 92 (499)
T ss_pred hhhccCCHhHhHHHhhhccccchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHH----HHHHHHhCCCCC-------
Confidence 35667888999999999999999988775 6777885 3455555555555544444 456667766554
Q ss_pred ccHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCchhhhHhHHHH-HhhhhccCCCcchhHHHH
Q 012371 113 IQWFEVLDGLLGKHWRNIGLFFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGAC-CATTVFIPSFHNYRIWSF 191 (465)
Q Consensus 113 ~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~ii~~~v-~~pl~~l~~l~~l~~~s~ 191 (465)
+....+++.+||+..+++.+..++.............+..+.++....+...|.....+. ++-+..++..+....+..
T Consensus 93 -g~y~y~~~~~G~~~gf~~GW~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~iN~~gvk~~~~i~~ 171 (499)
T PRK15049 93 -SFVSYAREFLGEKAAYVAGWMYFINWAMTGIVDITAVALYMHYWGAFGGVPQWVFALAALTIVGTMNMIGVKWFAEMEF 171 (499)
T ss_pred -CHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667778899999999888887666544333333323333333331111122333222111 111112222333333332
Q ss_pred HHHHHHHHHHHHH-H--HhhhhcccCC-----Ccc------CCCCchhhHhHhHHHHHHHHhcCccchHhHhhhccCCcc
Q 012371 192 LGLIMTSFTAWYL-T--IASLVHGQVE-----GVK------HSGPTKMVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK 257 (465)
Q Consensus 192 ~~~~~~~~~~~~~-~--~~~~~~g~~~-----~~~------~~~~~~~~~~~~a~~~~~faf~~~~~v~~i~~~mk~p~~ 257 (465)
...+.-+...+.+ + +.....+.+. +.. ...+..+..++.++....|+|.|-..+...-.|+|||+|
T Consensus 172 ~~~~iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~knP~r 251 (499)
T PRK15049 172 WFALIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGECKDPQT 251 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcChhh
Confidence 2221111111111 1 1111112111 110 011333445566677899999999999999999999976
Q ss_pred -chHHHHHHHHHHHHHHHhHHHHHHHhhcccccc--cccc---ccccCcccHHHHHHHHHHHHHHHHHHhhhccHHHHHH
Q 012371 258 -FKSIYLLATLYVLTLTLPSASAVYWAFGDMLLT--HSNA---FSLLPRTGFRDTAVILMLIHQFITFGFACTPLYFVWE 331 (465)
Q Consensus 258 -~~~~~~~s~~~~~~~y~~~g~~gy~~fG~~~~~--~~~i---l~~l~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~ 331 (465)
.+|+...++..+.++|+.....-....+.+..+ .++. ......++...+.++..+++.+.+.--.+...-+.+.
T Consensus 252 ~iPrAi~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~~~g~~~~~~ii~~~ilia~~ss~ns~~~~~sR~l~ 331 (499)
T PRK15049 252 MVPKAINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKLGVPYIGSIMNIVVLTAALSSLNSGLYCTGRILR 331 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 799988877777777766544333333221110 1111 1122222333455555555555554333332222221
Q ss_pred HH---------hcCCCCcchhhHHH-hhhhHHHHHHHHHHhcCC--chhhHHhhhhhhhhhhHHhhhhHHHHHHhcch
Q 012371 332 KF---------IGVHNTKSTFKRAL-ARLPVVIPIWFLAIIFPF--FGPINSTVGSLLVSFTVYIIPALAHMITFAPA 397 (465)
Q Consensus 332 ~~---------~~~~~~~~~~~~~~-~r~~~~~~~~~~A~~vp~--~~~i~~lvGs~~~~~l~~ilP~l~~l~~~~~~ 397 (465)
.+ +++.++++.+.+-+ +..++.++..++....|. ++.++++. ..+..+.|++|.+.+++.||+.
T Consensus 332 a~Ardg~lP~~f~kv~k~~~P~~Ail~~~~i~~l~~~l~~~~~~~~f~~l~~~~--~~~~li~y~~~~~~~l~~R~~~ 407 (499)
T PRK15049 332 SMAMGGSAPSFMAKMSRQHVPYAGILATLVVYVVGVFLNYLVPSRVFEIVLNFA--SLGIIASWAFIIVCQMRLRKAI 407 (499)
T ss_pred HHHhcCCcCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhh
Confidence 11 11112222233322 222222222222223332 44445543 3467889999999999887653
No 20
>PRK10746 putative transport protein YifK; Provisional
Probab=99.56 E-value=3.4e-11 Score=124.58 Aligned_cols=350 Identities=9% Similarity=-0.001 Sum_probs=189.7
Q ss_pred cccCCchhHHHHHHHhhhhhhhhchhH-HHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 012371 35 FWHGGSVYDAWFSCASNQVAQVLLTLP-YSFSQLGLLSGILLQLFYGLMGSWTAYLISILYVEYRTRKEREKVDFRNHVI 113 (465)
Q Consensus 35 ~~~~~s~~~a~~~l~~~~iG~GiL~lP-~a~~~~G~~~g~i~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~ 113 (465)
.+++.+.++..+..+.++||+|++..| .+.+.+|. ..++..++.+++.+.....+ .|...+.|++|
T Consensus 8 l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp-~~~l~~~i~g~~~~~v~~~~----aEl~~~~P~sG-------- 74 (461)
T PRK10746 8 LQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGP-SVLLAYIIAGLFVFFIMRSM----GEMLFLEPVTG-------- 74 (461)
T ss_pred HhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHH----HHHHHhcCCCC--------
Confidence 445677889999999999999998877 55667886 34455555666655554444 56666666544
Q ss_pred cHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCchhhhHhHHHHHhhhhccCCCcchhHHHHHH
Q 012371 114 QWFEVLDGLLGKHWRNIGLFFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLG 193 (465)
Q Consensus 114 ~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~ii~~~v~~pl~~l~~l~~l~~~s~~~ 193 (465)
++.+.+++.+||...+++.+..++.....+.......+..++++.+..+...+..+...++..+ ..+..+....+....
T Consensus 75 g~~~y~~~~~g~~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p~~~~~~~~~~~~~~~~~l-N~~gv~~~~~~e~~~ 153 (461)
T PRK10746 75 SFAVYAHRYMSPFFGYLTAWSYWFMWMAVGISEITAIGVYVQFWFPEMAQWIPALIAVALVALA-NLAAVRLYGEIEFWF 153 (461)
T ss_pred CHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHH-HHHhHHHHHHHHHHH
Confidence 7788899999999999998877776666666666566666666655443333333222221111 122223222222111
Q ss_pred HHHHHHH--HHHH-HH--hhhhcccC---CCcc----CC--CCchhhHhHhHHHHHHHHhcCccchHhHhhhccCCcc-c
Q 012371 194 LIMTSFT--AWYL-TI--ASLVHGQV---EGVK----HS--GPTKMVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-F 258 (465)
Q Consensus 194 ~~~~~~~--~~~~-~~--~~~~~g~~---~~~~----~~--~~~~~~~~~~a~~~~~faf~~~~~v~~i~~~mk~p~~-~ 258 (465)
...-+.. .+++ .+ .....++. .+.+ +. .+..+.++..++....|+|.|...+.....|+|||+| .
T Consensus 154 ~~~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~knP~k~i 233 (461)
T PRK10746 154 AMIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEAKNPQVTL 233 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHhcChhhHH
Confidence 1111110 0000 00 10111111 1111 11 1334667888999999999999999999999999965 6
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHhhcccccc--ccccc---cccCcccHHHHHHHHHHHHHHHHHHhhhccHHHHHHHH
Q 012371 259 KSIYLLATLYVLTLTLPSASAVYWAFGDMLLT--HSNAF---SLLPRTGFRDTAVILMLIHQFITFGFACTPLYFVWEKF 333 (465)
Q Consensus 259 ~~~~~~s~~~~~~~y~~~g~~gy~~fG~~~~~--~~~il---~~l~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~ 333 (465)
+|+...++..+.++|+..........+.+..+ +++.. .+...+....+.+...+++.+.+.--.++..-+.+..+
T Consensus 234 P~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~g~~~~~~i~~~~il~a~~s~~n~~~~~~sR~l~~~ 313 (461)
T PRK10746 234 RSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIGITAAAGIINFVVLTAALSGCNSGMYSCGRMLYAL 313 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887777777777766433333333222110 01111 11111223344555555555555433333332222222
Q ss_pred ---------hcCCCCcchhhHHH-hhhhHHHHHHHHHHhcCCchhhHHhhhhhh--hhhhHHhhhhHHHHHHhcchh
Q 012371 334 ---------IGVHNTKSTFKRAL-ARLPVVIPIWFLAIIFPFFGPINSTVGSLL--VSFTVYIIPALAHMITFAPAA 398 (465)
Q Consensus 334 ---------~~~~~~~~~~~~~~-~r~~~~~~~~~~A~~vp~~~~i~~lvGs~~--~~~l~~ilP~l~~l~~~~~~~ 398 (465)
+++.++++.+.+-+ +..+..++...+....|+-+.+++.+-+++ +..+.|+++++.+++.||+++
T Consensus 314 a~~g~lP~~~~~~~~~g~P~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l~~~~~~~~~i~w~~i~~~~i~~r~~~~ 390 (461)
T PRK10746 314 AKNRQLPAAMAKVSRHGVPVAGVAVSILILLVGSCLNYIIPNPQRVFVYVYSASVLPGMVPWFVILISQLRFRRAHK 390 (461)
T ss_pred HhCCCcCHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 11112222222222 222222223334445666566666554443 457899999999999887654
No 21
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=99.55 E-value=7.2e-11 Score=122.08 Aligned_cols=229 Identities=12% Similarity=0.112 Sum_probs=141.1
Q ss_pred cccCCchhHHHHHHHhhhhhhhhchhH-HHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 012371 35 FWHGGSVYDAWFSCASNQVAQVLLTLP-YSFSQLGLLSGILLQLFYGLMGSWTAYLISILYVEYRTRKEREKVDFRNHVI 113 (465)
Q Consensus 35 ~~~~~s~~~a~~~l~~~~iG~GiL~lP-~a~~~~G~~~g~i~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~ 113 (465)
.+++.+.++..+..+++++|+|++..| .+.+++|.. +++..++.+++...... +..|...+.|.+|
T Consensus 10 ~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~~-~~i~~~i~~v~~~~~a~----~~aEl~s~~P~~G-------- 76 (452)
T TIGR01773 10 LPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGPA-ALLAYLLAGLLVVFIMR----MLGEMAVANPDTG-------- 76 (452)
T ss_pred HhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCCH-HHHHHHHHHHHHHHHHH----HHHHHHHhcCCCC--------
Confidence 445677889999999999999999999 667788863 56666666666554444 4456666666444
Q ss_pred cHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCchhhhHhHHHH-HhhhhccCCCcchhHHHHH
Q 012371 114 QWFEVLDGLLGKHWRNIGLFFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGAC-CATTVFIPSFHNYRIWSFL 192 (465)
Q Consensus 114 ~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~ii~~~v-~~pl~~l~~l~~l~~~s~~ 192 (465)
+..+.+++.+||...++..+..+......+.......+..++.+.++.+ .|......+ ..-+...+..+....+...
T Consensus 77 g~~~~~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~n~~gv~~~~~~~~~ 154 (452)
T TIGR01773 77 SFSTYADDAIGRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFPDIP--LWLFSLILTIVLTLTNLYSVKSYGEFEFW 154 (452)
T ss_pred CHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCc--HHHHHHHHHHHHHHHHHHhcchhhHHHHH
Confidence 6677888999999999988887776666665665556666666554432 232222111 1112222334444444333
Q ss_pred HHHHHHHHHH--HH-HHhhhhcccC----CCcc----CC--CCchhhHhHhHHHHHHHHhcCccchHhHhhhccCCcc-c
Q 012371 193 GLIMTSFTAW--YL-TIASLVHGQV----EGVK----HS--GPTKMVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-F 258 (465)
Q Consensus 193 ~~~~~~~~~~--~~-~~~~~~~g~~----~~~~----~~--~~~~~~~~~~a~~~~~faf~~~~~v~~i~~~mk~p~~-~ 258 (465)
..+.-+...+ ++ .+.....+.+ .+.. .. .+..+.+++.++....|+|.|......+.+|+|||+| .
T Consensus 155 ~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~k~P~r~i 234 (452)
T TIGR01773 155 FALIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAESSNPIKSI 234 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhhcChhhHH
Confidence 2222111110 11 1111111111 0111 01 1334456888999999999999999999999999975 7
Q ss_pred hHHHHHHHHHHHHHHHhHHH
Q 012371 259 KSIYLLATLYVLTLTLPSAS 278 (465)
Q Consensus 259 ~~~~~~s~~~~~~~y~~~g~ 278 (465)
+|+...++....++|+....
T Consensus 235 PrAi~~~~~~~~~~y~l~~~ 254 (452)
T TIGR01773 235 TRATNSVIWRIIVFYLGSIF 254 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 89887777777777876433
No 22
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.54 E-value=4.1e-12 Score=127.37 Aligned_cols=334 Identities=14% Similarity=0.110 Sum_probs=193.5
Q ss_pred CCchhHHHHHHHhhhhhhhhchhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccHHH
Q 012371 38 GGSVYDAWFSCASNQVAQVLLTLPYSFSQLGLLSGILLQLFYGLMGSWTAYLISILYVEYRTRKEREKVDFRNHVIQWFE 117 (465)
Q Consensus 38 ~~s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~ 117 (465)
+.|.+|..+....+++|+|++.+|...++.+--.+++..++.++.......++.+. .++.| + .+..|
T Consensus 2 ~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l----~~~~p--~-------~~~~~ 68 (359)
T TIGR00912 2 KISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKI----MSKFP--E-------KNFSE 68 (359)
T ss_pred cCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHH----HHHCC--C-------CCHHH
Confidence 56788999999999999999999998766433345666677777777777776554 33332 1 27889
Q ss_pred HHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh-hccCCchhhhHh-HHHHHhhhhccCCCcchhHHHHHHHH
Q 012371 118 VLDGLLGKHWRNIGLFFNCTFLLFGSVIQLIACASNIYYI-NDNLDKRTWTYI-FGACCATTVFIPSFHNYRIWSFLGLI 195 (465)
Q Consensus 118 l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~-~~~~~~~~~~ii-~~~v~~pl~~l~~l~~l~~~s~~~~~ 195 (465)
..++++||+.+++..+....+....+.......++.++.. .++. ..+.+. ..++..-....+.++.....+.+-..
T Consensus 69 ~~~~~~Gk~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~t--p~~~~~l~~l~~~~~~~~~Gi~~i~r~~~i~~~ 146 (359)
T TIGR00912 69 ILSKYLGKILGRLLSILFILYFFLIAAYLIRIFADFIKTYLLPRT--PIIVIIILIIIVSIYIVRKGIEVLLRTAEILLI 146 (359)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 9999999999998888777666666555555555555433 2222 222221 11222222233456666665554443
Q ss_pred HHHHHH-HHHHHhhhhcccCCCccCCCCchhhHhHhHH-HHHHHHhcCccchHhHhhhccCCccchHHHHHHHHHHHHHH
Q 012371 196 MTSFTA-WYLTIASLVHGQVEGVKHSGPTKMVLYFTGA-TNILYTFGGHAVTVEIMHAMWKPQKFKSIYLLATLYVLTLT 273 (465)
Q Consensus 196 ~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~-~~~~faf~~~~~v~~i~~~mk~p~~~~~~~~~s~~~~~~~y 273 (465)
..+... +.+........+.++..+..+.+..+.+.+. ....++|.+...+.....++|+|++.+|+...+...+.++|
T Consensus 147 ~~i~~~~~il~~~~~~~~~~~~l~P~~~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~~~~~k~~~~~~~~~~~ly 226 (359)
T TIGR00912 147 IFLILFILVLILLAPKLGNIKNLLPVLENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKKKKIKKSIIKAIIIGVLLY 226 (359)
T ss_pred HHHHHHHHHHHHHhcccccHHHccCccccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCChhhhHHHHHHHHHHHHHHH
Confidence 332221 1111111112112222222333444555444 37888998888888899999999999999999999999999
Q ss_pred HhHHHHHHHhhccccccc--cccc---cccCcccH----HHHHHHHHHHHHHHHHHhhhccHHHHHHHHhcCCCCcchhh
Q 012371 274 LPSASAVYWAFGDMLLTH--SNAF---SLLPRTGF----RDTAVILMLIHQFITFGFACTPLYFVWEKFIGVHNTKSTFK 344 (465)
Q Consensus 274 ~~~g~~gy~~fG~~~~~~--~~il---~~l~~~~~----~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~~~~~~ 344 (465)
...-+.....+|.+...+ -+.. ...+-+.. -.+.-..-.+..+...-+..+.....+.+.++.++.+
T Consensus 227 ~~~~~~~i~~lg~~~~~~~~~P~~~~~~~i~~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~~~~~~~~~~~---- 302 (359)
T TIGR00912 227 ILTTFVSISVFGGNVTKNLYWPTLELIKLINIGDFIERFELIVMTFWVFIIFVKIAFYLYIAVKGLSKLFKKRKYS---- 302 (359)
T ss_pred HHHHHHHHheecHHHhhhhcccHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcc----
Confidence 888888788887654210 0111 11111111 1122233445566666666677778888888644332
Q ss_pred HHHhhhhHHHHHHHHHHhcCC-chhhHHhhhh---hhhhhhHHhhhhHHHHHHh
Q 012371 345 RALARLPVVIPIWFLAIIFPF-FGPINSTVGS---LLVSFTVYIIPALAHMITF 394 (465)
Q Consensus 345 ~~~~r~~~~~~~~~~A~~vp~-~~~i~~lvGs---~~~~~l~~ilP~l~~l~~~ 394 (465)
.++.-.+. ....++ ..|+ ... ...... ..+....+++|.++.+...
T Consensus 303 ~~~~~~~~--~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~P~ll~~i~~ 352 (359)
T TIGR00912 303 ILILPVLM--VIFSIS-FFPDSSNQ-LFDYLEFLPIIAIVFFLLLPLILFIIVK 352 (359)
T ss_pred hhHHHHHH--HHHHHH-HccchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222221 222222 3554 332 223222 2345667788998776554
No 23
>PRK11387 S-methylmethionine transporter; Provisional
Probab=99.53 E-value=8.5e-11 Score=122.10 Aligned_cols=233 Identities=12% Similarity=0.056 Sum_probs=134.1
Q ss_pred cccCCchhHHHHHHHhhhhhhhhchhHHH-HHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 012371 35 FWHGGSVYDAWFSCASNQVAQVLLTLPYS-FSQLGLLSGILLQLFYGLMGSWTAYLISILYVEYRTRKEREKVDFRNHVI 113 (465)
Q Consensus 35 ~~~~~s~~~a~~~l~~~~iG~GiL~lP~a-~~~~G~~~g~i~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~ 113 (465)
.+++.+.++..+..+++++|+|++..|.. .+.+|-...++..++.+++.+.....+ .|...+.|++|
T Consensus 12 l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~----aELas~~P~aG-------- 79 (471)
T PRK11387 12 FKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCL----GELSVAMPETG-------- 79 (471)
T ss_pred hhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH----HHHHHHcCCCC--------
Confidence 44567889999999999999999887755 566785433555566666665555554 56666666544
Q ss_pred cHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCchhhhHhHHHHHhhhhccCCCcchhHHHHHH
Q 012371 114 QWFEVLDGLLGKHWRNIGLFFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLG 193 (465)
Q Consensus 114 ~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~ii~~~v~~pl~~l~~l~~l~~~s~~~ 193 (465)
.+....++.+|+...+++.+..++.....+.......+..+..+.++.....+.++..++ +-+...+..+.....+...
T Consensus 80 G~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~in~~gvk~~~~~~~~~ 158 (471)
T PRK11387 80 AFHVYAARYLGPATGYTVAWLYWLTWTVALGSSLTAAGFCMQYWFPQVPVWPWCLLFCAL-IFGLNVVSTRFFAEGEFWF 158 (471)
T ss_pred CHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCcHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHH
Confidence 566778889999999888887766554444333333333344444432222222222111 1122222233333222211
Q ss_pred HHHHHHHHHHHHHh---hhh------cccC-CCcc---CC-C-CchhhHhHhHHHHHHHHhcCccchHhHhhhccCCcc-
Q 012371 194 LIMTSFTAWYLTIA---SLV------HGQV-EGVK---HS-G-PTKMVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK- 257 (465)
Q Consensus 194 ~~~~~~~~~~~~~~---~~~------~g~~-~~~~---~~-~-~~~~~~~~~a~~~~~faf~~~~~v~~i~~~mk~p~~- 257 (465)
.+.-+...+.+++. ... .+++ +..+ .. + +....+++.++....|+|.|-..+...-+|+|||+|
T Consensus 159 ~~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~ 238 (471)
T PRK11387 159 SLIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGETENPAKV 238 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHHhcChhhH
Confidence 11111111011111 110 0111 1111 11 1 223345777788899999999999999999999976
Q ss_pred chHHHHHHHHHHHHHHHhHHHHH
Q 012371 258 FKSIYLLATLYVLTLTLPSASAV 280 (465)
Q Consensus 258 ~~~~~~~s~~~~~~~y~~~g~~g 280 (465)
.+|+...++..+.++|+...+..
T Consensus 239 iPrAi~~~~~~~~~~y~~~~~~~ 261 (471)
T PRK11387 239 IPVAIRTTIARLVIFFVGTVLVL 261 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 78998888888888887765443
No 24
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=99.53 E-value=9.6e-11 Score=120.88 Aligned_cols=234 Identities=12% Similarity=0.051 Sum_probs=135.1
Q ss_pred ccccCCchhHHHHHHHhhhhhhhhchhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 012371 34 FFWHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGLLSGILLQLFYGLMGSWTAYLISILYVEYRTRKEREKVDFRNHVI 113 (465)
Q Consensus 34 ~~~~~~s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~ 113 (465)
+.+++.+.+++....+++++|+|++.+|...++.|.. .+...++.++.... ..-++.|..++.|++|
T Consensus 5 ~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~~-~~~~~~i~~~~~l~----~al~~aEL~s~~P~aG-------- 71 (445)
T PRK10644 5 ADAHKVGLIPVTLMVAGNIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALG----LSMVYAKMSSLDPSPG-------- 71 (445)
T ss_pred ccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHHHHH-HHHHHHHHHHHHHH----HHHHHHHHHhhCCCCC--------
Confidence 3556788999999999999999999999988887632 33344444444433 3334467777777655
Q ss_pred cHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCchh-hhHhHHHHHhhhhc--cCCCcchhHHH
Q 012371 114 QWFEVLDGLLGKHWRNIGLFFNCTFLLFGSVIQLIACASNIYYINDNLDKRT-WTYIFGACCATTVF--IPSFHNYRIWS 190 (465)
Q Consensus 114 ~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~-~~ii~~~v~~pl~~--l~~l~~l~~~s 190 (465)
.....+++.+||...++..+..++.......+......+....+.+....+. ..++..++++.+.. .+..+....+.
T Consensus 72 G~y~~~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~gvk~~~~i~ 151 (445)
T PRK10644 72 GSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPLVLTITCVVVLWIFVLLNIVGPKMITRVQ 151 (445)
T ss_pred ChhHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHH
Confidence 3334478889999998887766554333333333233333333333222222 11222222222222 22234443333
Q ss_pred HHHHHHHHHHHHHHHHhhhh--ccc--CCCccCCCCchhhHhHhHHHHHHHHhcCccchHhHhhhccCCc-cchHHHHHH
Q 012371 191 FLGLIMTSFTAWYLTIASLV--HGQ--VEGVKHSGPTKMVLYFTGATNILYTFGGHAVTVEIMHAMWKPQ-KFKSIYLLA 265 (465)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~--~g~--~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~v~~i~~~mk~p~-~~~~~~~~s 265 (465)
.+.....+...+.+.+.... ++. .++.+...+..+..+..++....|+|.|-......-+|+|||+ +.+|+...+
T Consensus 152 ~i~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iPrai~~s 231 (445)
T PRK10644 152 AVATVLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGG 231 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCchhccCCccccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcccchhHHHHHH
Confidence 33322221111111111111 111 1111111223445667788889999999999999999999996 479999999
Q ss_pred HHHHHHHHHhHHHHH
Q 012371 266 TLYVLTLTLPSASAV 280 (465)
Q Consensus 266 ~~~~~~~y~~~g~~g 280 (465)
...+.++|.+..+.-
T Consensus 232 ~~i~~v~Y~l~~~~~ 246 (445)
T PRK10644 232 VLIAAVCYVLSSTAI 246 (445)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998766553
No 25
>PRK10238 aromatic amino acid transporter; Provisional
Probab=99.53 E-value=5.2e-11 Score=123.12 Aligned_cols=348 Identities=12% Similarity=0.057 Sum_probs=182.7
Q ss_pred cccCCchhHHHHHHHhhhhhhhhchhHHH-HHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 012371 35 FWHGGSVYDAWFSCASNQVAQVLLTLPYS-FSQLGLLSGILLQLFYGLMGSWTAYLISILYVEYRTRKEREKVDFRNHVI 113 (465)
Q Consensus 35 ~~~~~s~~~a~~~l~~~~iG~GiL~lP~a-~~~~G~~~g~i~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~ 113 (465)
.+++.+.++..+..+++++|+|++..|.. .+++|- ..++..++.++..+... .+..|...+.|..|
T Consensus 10 l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp-~~i~~~~i~gi~~~~v~----~s~aEl~s~~P~aG-------- 76 (456)
T PRK10238 10 LKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGP-GIILGYAIAGFIAFLIM----RQLGEMVVEEPVAG-------- 76 (456)
T ss_pred hhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCc-HHHHHHHHHHHHHHHHH----HHHHHHHHhcCCCC--------
Confidence 44567788899999999999999888855 556774 34444455555444443 44466777776554
Q ss_pred cHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCchhhhHhHHHHHhhhhccCCCcchhHHHHHH
Q 012371 114 QWFEVLDGLLGKHWRNIGLFFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLG 193 (465)
Q Consensus 114 ~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~ii~~~v~~pl~~l~~l~~l~~~s~~~ 193 (465)
++.+.+++.+||...++..+..++.....+.+.....++.++.+.++.+...+..+...+...+. ....+....++...
T Consensus 77 g~y~~~~~~~g~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~lN-~~gv~~~~~~~~~~ 155 (456)
T PRK10238 77 SFSHFAYKYWGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYPEIPTWVSAAVFFVVINAIN-LTNVKVFGEMEFWF 155 (456)
T ss_pred CHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHH
Confidence 66677788899999999999888777767766666667777666554333333222222111111 11223333333322
Q ss_pred HHHHHHHHHHHH---Hhhhhc--ccCC-Cc----cCC--CCchhhHhHhHHHHHHHHhcCccchHhHhhhccCCcc-chH
Q 012371 194 LIMTSFTAWYLT---IASLVH--GQVE-GV----KHS--GPTKMVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKS 260 (465)
Q Consensus 194 ~~~~~~~~~~~~---~~~~~~--g~~~-~~----~~~--~~~~~~~~~~a~~~~~faf~~~~~v~~i~~~mk~p~~-~~~ 260 (465)
.+.-+...+.++ +..... +.++ .. +.. .+..+.++..+++...|+|.|-.......+|+|||+| .+|
T Consensus 156 ~~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~knP~r~iPr 235 (456)
T PRK10238 156 AIIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNPEQSIPK 235 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhhcChhhHHHH
Confidence 222111111111 111111 1111 11 111 1334556777888899999999999999999999975 788
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhhcccc---cccccc---ccccCcccHHHHHHHHHHHHHHHHHHhhhccHHHHHHHH-
Q 012371 261 IYLLATLYVLTLTLPSASAVYWAFGDML---LTHSNA---FSLLPRTGFRDTAVILMLIHQFITFGFACTPLYFVWEKF- 333 (465)
Q Consensus 261 ~~~~s~~~~~~~y~~~g~~gy~~fG~~~---~~~~~i---l~~l~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~- 333 (465)
+...++....++|+.. ........+.. .+.++. +.+........+.+...+++.+.+.--.....-+.+..+
T Consensus 236 Ai~~~~~~i~~~y~~~-~~~~~~~~p~~~l~~~~sP~~~~~~~~g~~~~~~i~~~~i~~~~~s~~~~~~~~~sR~l~a~a 314 (456)
T PRK10238 236 ATNQVIYRILIFYIGS-LAVLLSLMPWTRVTADTSPFVLIFHELGDTFVANALNIVVLTAALSVYNSCVYCNSRMLFGLA 314 (456)
T ss_pred HHHHHHHHHHHHHHHH-HHHHheecChhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8876666666666542 21111111110 000111 112222223344445555554444433333322222111
Q ss_pred --------hcCCCCcchhhHHHhhhhHHH-HHHHHHHhcC--CchhhHHhhhhhhhhhhHHhhhhHHHHHHhcchhh
Q 012371 334 --------IGVHNTKSTFKRALARLPVVI-PIWFLAIIFP--FFGPINSTVGSLLVSFTVYIIPALAHMITFAPAAA 399 (465)
Q Consensus 334 --------~~~~~~~~~~~~~~~r~~~~~-~~~~~A~~vp--~~~~i~~lvGs~~~~~l~~ilP~l~~l~~~~~~~~ 399 (465)
+++.++++.+.+-+.-...+. +..++....| .++.+.++. ..+..+.|.+|.+.+++.||++++
T Consensus 315 rdg~lP~~f~kv~~~~~P~~Ail~~~~i~~l~~l~~~~~~~~~f~~l~~~~--~~~~~i~y~~~~~~~l~~r~~~~~ 389 (456)
T PRK10238 315 QQGNAPKALASVDKRGVPVNTILVSALVTALCVLINYLAPESAFGLLMALV--VSALVINWAMISLAHMKFRRAKQE 389 (456)
T ss_pred hCCCccHHHHhhCcCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111122223333222222222 2222212233 244444442 335678999999999998876543
No 26
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=99.52 E-value=7.7e-11 Score=122.48 Aligned_cols=234 Identities=10% Similarity=-0.009 Sum_probs=139.1
Q ss_pred ccCCchhHHHHHHHhhhhhhhhchhHHHHHhhc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cccccccccc
Q 012371 36 WHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLG-LLSGILLQLFYGLMGSWTAYLISILYVEYRTRKER-EKVDFRNHVI 113 (465)
Q Consensus 36 ~~~~s~~~a~~~l~~~~iG~GiL~lP~a~~~~G-~~~g~i~l~~~~~~~~~s~~ll~~~~~~~~~~~~~-~~~~~~~~~~ 113 (465)
+++.+.+++.+..+++++|+|++.+|....+.| -...++..++.++........ +.|..++.|+ +|
T Consensus 6 ~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~----~aEl~s~~P~~sG-------- 73 (473)
T TIGR00905 6 SKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFV----FAILATKKPELDG-------- 73 (473)
T ss_pred CCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHH----HHHHHhhCCCCCC--------
Confidence 457889999999999999999999999877644 222244455555555544443 4566677665 44
Q ss_pred cHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccC--Cchh-hhHhHHHHHhh--hhccCCCcchhH
Q 012371 114 QWFEVLDGLLGKHWRNIGLFFNCTFLLFGSVIQLIACASNIYYINDNL--DKRT-WTYIFGACCAT--TVFIPSFHNYRI 188 (465)
Q Consensus 114 ~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~--~~~~-~~ii~~~v~~p--l~~l~~l~~l~~ 188 (465)
...+..++.+||...++..+..+........++.....+.+..+.+.. +... ..++..++.+. ....+..+..+.
T Consensus 74 G~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~ln~~Gi~~~~~ 153 (473)
T TIGR00905 74 GIYAYAREGFGPYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFGSGNPVPSILGASVLLWVFTFLVLRGVRQAAF 153 (473)
T ss_pred ChhhhHHhHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 445567889999999988887665544444445444444444443311 1121 11211222222 222334444444
Q ss_pred HHHHHHHHHHHHHHHHHHhhh--hcccCC--CccC----CCCchhhHhHhHHHHHHHHhcCccchHhHhhhccCCccchH
Q 012371 189 WSFLGLIMTSFTAWYLTIASL--VHGQVE--GVKH----SGPTKMVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKS 260 (465)
Q Consensus 189 ~s~~~~~~~~~~~~~~~~~~~--~~g~~~--~~~~----~~~~~~~~~~~a~~~~~faf~~~~~v~~i~~~mk~p~~~~~ 260 (465)
++.+.....+...+.+.+..+ .+++.. +..+ .....+..+..++....|+|.|-.....+-+|+||+++.+|
T Consensus 154 i~~~~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~~r~iPr 233 (473)
T TIGR00905 154 INTITTIAKLIPLFLFIIIGWFWFKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKNKSDVGK 233 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhccccchH
Confidence 444333322211111111111 122110 1111 11123456778888899999999999999999999666899
Q ss_pred HHHHHHHHHHHHHHhHHHHHH
Q 012371 261 IYLLATLYVLTLTLPSASAVY 281 (465)
Q Consensus 261 ~~~~s~~~~~~~y~~~g~~gy 281 (465)
+...+..++.++|++......
T Consensus 234 ai~~~~~i~~~~Yil~~~~~~ 254 (473)
T TIGR00905 234 ATVLGTLGALVIYILITLLSL 254 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999987665533
No 27
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=99.51 E-value=9.3e-11 Score=121.71 Aligned_cols=350 Identities=10% Similarity=0.047 Sum_probs=178.6
Q ss_pred cccCCchhHHHHHHHhhhhhhhhchhH-HHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 012371 35 FWHGGSVYDAWFSCASNQVAQVLLTLP-YSFSQLGLLSGILLQLFYGLMGSWTAYLISILYVEYRTRKEREKVDFRNHVI 113 (465)
Q Consensus 35 ~~~~~s~~~a~~~l~~~~iG~GiL~lP-~a~~~~G~~~g~i~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~ 113 (465)
.+++.+.++..+..++++||+|++-.| .+.+++|. ..+...++.+++.......+ .|.....+.. .
T Consensus 18 l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp-~~i~~~~i~~i~~~~~~~s~----aEl~s~~~~~--------~ 84 (469)
T PRK11049 18 LRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGP-SIIFVYMIIGFMLFFVMRAM----GELLLSNLEY--------K 84 (469)
T ss_pred hhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCc-HHHHHHHHHHHHHHHHHHHH----HHHHHhcCCC--------C
Confidence 556778888999999999999998876 57888887 34555566666665555444 4444332211 1
Q ss_pred cHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCchhhhHhHHHHHhhhhccCCCcchhHHHHHH
Q 012371 114 QWFEVLDGLLGKHWRNIGLFFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLG 193 (465)
Q Consensus 114 ~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~ii~~~v~~pl~~l~~l~~l~~~s~~~ 193 (465)
++.+.+++.+||...+++.+..++.......+.....+..+..+.+......+..+...+. -+......+..+.++.+.
T Consensus 85 ~~~~ya~~~~g~~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p~~~~~~~~~~~~~~~-~~iN~~g~~~~~~i~~~~ 163 (469)
T PRK11049 85 SFSDFASDLLGPWAGYFTGWTYWFCWVVTGIADVVAITAYAQFWFPDLSDWVASLAVVLLL-LSLNLATVKMFGEMEFWF 163 (469)
T ss_pred cHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHH
Confidence 5667899999999999998887765543434444444445555544332222222111111 112222233333333322
Q ss_pred HHHHHHHHHHHHHhhh--h-cc--cCC----Cc----cCC--CCchhhHhHhHHHHHHHHhcCccchHhHhhhccCCcc-
Q 012371 194 LIMTSFTAWYLTIASL--V-HG--QVE----GV----KHS--GPTKMVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK- 257 (465)
Q Consensus 194 ~~~~~~~~~~~~~~~~--~-~g--~~~----~~----~~~--~~~~~~~~~~a~~~~~faf~~~~~v~~i~~~mk~p~~- 257 (465)
...-+...+.+++..+ . .+ .+. .. +.. .|..+.+++.++....|+|.|-..+...-+|+|||+|
T Consensus 164 ~~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~ 243 (469)
T PRK11049 164 AMIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAETKDPEKS 243 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHHhcCHhhH
Confidence 2221111111111111 1 11 010 11 111 1334556889999999999999999999999999976
Q ss_pred chHHHHHHHHHHHHHHHhHHHHHHHhhccccc-c-cccc---ccccCcccHHHHHHHHHHHHHHHHHHhhh-ccHHHHHH
Q 012371 258 FKSIYLLATLYVLTLTLPSASAVYWAFGDMLL-T-HSNA---FSLLPRTGFRDTAVILMLIHQFITFGFAC-TPLYFVWE 331 (465)
Q Consensus 258 ~~~~~~~s~~~~~~~y~~~g~~gy~~fG~~~~-~-~~~i---l~~l~~~~~~~~~~~~~~i~~~~s~pl~~-~p~~~~~~ 331 (465)
.+|+...+.....++|.+....-+..-+.+.. + +++. ......++...+..++.+++.+.+.-... -+.|....
T Consensus 244 iPrai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~a 323 (469)
T PRK11049 244 LPRAINSIPIRIIMFYVFALIVIMSVTPWSSVVPDKSPFVELFVLVGLPAAASVINFVVLTSAASSANSGVFSTSRMLFG 323 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHeeecCccccCccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68888666666666676544333222111110 0 0111 11111122334444444444444432222 22222211
Q ss_pred H--------HhcCCCCcchhhHHHhhhhH-HHHHHHHHHhcCCchhhHHhhhhh--hhhhhHHhhhhHHHHHHhcchh
Q 012371 332 K--------FIGVHNTKSTFKRALARLPV-VIPIWFLAIIFPFFGPINSTVGSL--LVSFTVYIIPALAHMITFAPAA 398 (465)
Q Consensus 332 ~--------~~~~~~~~~~~~~~~~r~~~-~~~~~~~A~~vp~~~~i~~lvGs~--~~~~l~~ilP~l~~l~~~~~~~ 398 (465)
- .+++.++++.+.+-+.-... ..+..++....|+....++.+-++ ....+.|+++.+.+++.||+++
T Consensus 324 ~ardg~lP~~~~kv~~~~tP~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~a~~~lr~~~p 401 (469)
T PRK11049 324 LAQEGVAPKAFAKLSKRAVPAKGLTFSCICLLGGVVLLYVNPSVIGAFTLVTTVSAILFMFVWTIILCSYLVYRKQRP 401 (469)
T ss_pred HHhCCCCCHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 1 11111222233332222222 222233344566655555544333 2456788899999988877654
No 28
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=99.51 E-value=1.2e-10 Score=119.64 Aligned_cols=236 Identities=11% Similarity=0.010 Sum_probs=138.2
Q ss_pred cccCCchhHHHHHHHhhhhhhhhchhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccc
Q 012371 35 FWHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGLLSGILLQLFYGLMGSWTAYLISILYVEYRTRKEREKVDFRNHVIQ 114 (465)
Q Consensus 35 ~~~~~s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 114 (465)
.+++.+.++.....+++++|+|++.+|...++.|-. .+...++.++... .+..+..|...+.|++| .
T Consensus 3 ~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~~G~~-~i~~wli~~~~~l----~~al~~aEL~s~~P~~G--------G 69 (435)
T PRK10435 3 SAKKIGLFACTGVVAGNMMGSGIALLPANLASIGSI-AIWGWIISIIGAM----SLAYVYARLATKNPQQG--------G 69 (435)
T ss_pred CCCcCCHHHHHHHHHhhHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHH----HHHHHHHHHHhhCCCCC--------C
Confidence 345788899999999999999999999999988753 3444444444433 44555577777777554 4
Q ss_pred HHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCchhhhHh-HHHHHhhhh--ccCCCcchhHHHH
Q 012371 115 WFEVLDGLLGKHWRNIGLFFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYI-FGACCATTV--FIPSFHNYRIWSF 191 (465)
Q Consensus 115 y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~ii-~~~v~~pl~--~l~~l~~l~~~s~ 191 (465)
..+.+++ +||...+.+.+..+........++.+...+.+..+.+.........+ ..+++..+. ..+..+..+.++.
T Consensus 70 ~y~y~~~-~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~~~~~~~~~~~~~i~~~~~~ln~~gvk~~~~i~~ 148 (435)
T PRK10435 70 PIAYAGE-ISPAFGFQTGVLYYHANWIGNLAIGITAVSYLSTFFPVLNDPIPAGIACIAIVWVFTFVNMLGGTWVSRLTT 148 (435)
T ss_pred hhHHHHH-HCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4445566 79988888877655433223333333334444444333222221111 111222222 2223333333333
Q ss_pred HHHHHHHHHHHHHHHhhhhcccCC----CccCCCCchhhHhHhHHHHHHHHhcCccchHhHhhhccCCc-cchHHHHHHH
Q 012371 192 LGLIMTSFTAWYLTIASLVHGQVE----GVKHSGPTKMVLYFTGATNILYTFGGHAVTVEIMHAMWKPQ-KFKSIYLLAT 266 (465)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~g~~~----~~~~~~~~~~~~~~~a~~~~~faf~~~~~v~~i~~~mk~p~-~~~~~~~~s~ 266 (465)
+..+..+...+...+....+.+++ +.++..+.+..+++.++....|+|.|-+.+....+|+|||+ +.+|+...+.
T Consensus 149 i~~~~~li~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r~iPrAi~~~~ 228 (435)
T PRK10435 149 IGLVLVLIPVVGTAIVGWHWFDAATYAANWNTSDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRTVPLATMLGT 228 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHhhcccccCCCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCccccccHHHHHHH
Confidence 322222111111111111111111 11112234567888999999999999999999999999995 6899999999
Q ss_pred HHHHHHHHhHHHHHHHhh
Q 012371 267 LYVLTLTLPSASAVYWAF 284 (465)
Q Consensus 267 ~~~~~~y~~~g~~gy~~f 284 (465)
..+.++|++..+......
T Consensus 229 ~iv~ilYil~~~~~~~~~ 246 (435)
T PRK10435 229 GLAGIIYIAATQVISGMF 246 (435)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 999999987766544333
No 29
>PRK10836 lysine transporter; Provisional
Probab=99.51 E-value=2.6e-10 Score=118.98 Aligned_cols=234 Identities=10% Similarity=0.006 Sum_probs=129.8
Q ss_pred cccCCchhHHHHHHHhhhhhhhhchhHH-HHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 012371 35 FWHGGSVYDAWFSCASNQVAQVLLTLPY-SFSQLGLLSGILLQLFYGLMGSWTAYLISILYVEYRTRKEREKVDFRNHVI 113 (465)
Q Consensus 35 ~~~~~s~~~a~~~l~~~~iG~GiL~lP~-a~~~~G~~~g~i~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~ 113 (465)
.+++.+.++..+..++++||+|++..|. +.+++|....++..++.+++....+..+ .|...+.|++|
T Consensus 13 l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~----aEL~s~~P~sG-------- 80 (489)
T PRK10836 13 LRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSL----GELAAYMPVSG-------- 80 (489)
T ss_pred ccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHH----HHHHHHCCCCC--------
Confidence 4456778999999999999999999995 6677886444666666777666555544 56677777655
Q ss_pred cHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCchhhhHhHHHHHhhhhccCCCcchhHHHHHH
Q 012371 114 QWFEVLDGLLGKHWRNIGLFFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLG 193 (465)
Q Consensus 114 ~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~ii~~~v~~pl~~l~~l~~l~~~s~~~ 193 (465)
+....+++.+|+..++++.+..+.................+..+.+..+...+..+..+++. .......+..+......
T Consensus 81 g~y~y~~~~~g~~~gf~~Gw~~~~~~~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~lN~~gv~~~~~~~~~~ 159 (489)
T PRK10836 81 SFATYGQNYVEEGFGFALGWNYWYNWAVTIAVDLVAAQLVMSWWFPDTPGWIWSALFLGVIF-LLNYISVRGFGEAEYWF 159 (489)
T ss_pred CHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHH-HHHHHcchhhhhhHHHH
Confidence 55566677788888887777655433322222222222223333332222112221111111 11222223222222111
Q ss_pred H---HHHHHH--HHHHH-HhhhhcccC----CCccC---CCCchhhHhHhHHHHHHHHhcCccchHhHhhhccCCcc-ch
Q 012371 194 L---IMTSFT--AWYLT-IASLVHGQV----EGVKH---SGPTKMVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FK 259 (465)
Q Consensus 194 ~---~~~~~~--~~~~~-~~~~~~g~~----~~~~~---~~~~~~~~~~~a~~~~~faf~~~~~v~~i~~~mk~p~~-~~ 259 (465)
. +..+.. .+.++ +....++.. .+.+. ..+..+..++.+.....|+|.|-..+...-+|+|||+| .+
T Consensus 160 ~~~ki~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~iP 239 (489)
T PRK10836 160 SLIKVTTVIVFIIVGVLMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGESEDPAKNIP 239 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHHhcCHHHHHH
Confidence 1 111110 00010 111111111 01110 01223445566666677999999999999999999965 68
Q ss_pred HHHHHHHHHHHHHHHhHHHHHH
Q 012371 260 SIYLLATLYVLTLTLPSASAVY 281 (465)
Q Consensus 260 ~~~~~s~~~~~~~y~~~g~~gy 281 (465)
|+...++..+.++|+.....-.
T Consensus 240 rAi~~~~~~v~~~Yvl~~~~~~ 261 (489)
T PRK10836 240 RAVRQVFWRILLFYVFAILIIS 261 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 9998898888888987654433
No 30
>PRK10580 proY putative proline-specific permease; Provisional
Probab=99.49 E-value=5.5e-10 Score=115.62 Aligned_cols=228 Identities=12% Similarity=0.088 Sum_probs=134.9
Q ss_pred cccCCchhHHHHHHHhhhhhhhhchhHHH-HHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 012371 35 FWHGGSVYDAWFSCASNQVAQVLLTLPYS-FSQLGLLSGILLQLFYGLMGSWTAYLISILYVEYRTRKEREKVDFRNHVI 113 (465)
Q Consensus 35 ~~~~~s~~~a~~~l~~~~iG~GiL~lP~a-~~~~G~~~g~i~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~ 113 (465)
.+++.+.++..+..+.+++|+|++.+|.. .+.+|-. .++..++.++........+ .|..++.|.+|
T Consensus 7 l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~~-~~l~~~i~~i~~~~~a~~~----aEl~s~~P~~G-------- 73 (457)
T PRK10580 7 LKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGPS-VLLAYIIGGVAAYIIMRAL----GEMSVHNPAAS-------- 73 (457)
T ss_pred ccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-HHHHHHHHHHHHHHHHHHH----HHHHHHcCCCC--------
Confidence 44567888999999999999999998865 5567753 4566666666666655554 56666666544
Q ss_pred cHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCchhhhHhHHHHHhhhhccCCCcchhHHHHHH
Q 012371 114 QWFEVLDGLLGKHWRNIGLFFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLG 193 (465)
Q Consensus 114 ~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~ii~~~v~~pl~~l~~l~~l~~~s~~~ 193 (465)
+....+++.+||...+++.+..++.....+.......+..+..+.++.+...+.+...+ +.-....+..+....+....
T Consensus 74 g~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~ln~~gv~~~~~~~~~~ 152 (457)
T PRK10580 74 SFSRYAQENLGPLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFPTVPHWIWVLSVVL-IICAVNLMSVKVFGELEFWF 152 (457)
T ss_pred CHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHH-HHHHHHHccchhHHHHHHHH
Confidence 55567788999999999888766655444444334444444455444333333222222 11222233344444433322
Q ss_pred HHHHHHHHHHH-------HHhhhhcc-cCCCc----cC--CCCchhhHhHhHHHHHHHHhcCccchHhHhhhccCCcc-c
Q 012371 194 LIMTSFTAWYL-------TIASLVHG-QVEGV----KH--SGPTKMVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-F 258 (465)
Q Consensus 194 ~~~~~~~~~~~-------~~~~~~~g-~~~~~----~~--~~~~~~~~~~~a~~~~~faf~~~~~v~~i~~~mk~p~~-~ 258 (465)
.+..+...+.+ ......++ .+.+. +. ..+..+.+++.++....|+|.|........+|+|||+| .
T Consensus 153 ~~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~k~i 232 (457)
T PRK10580 153 SFFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDPEKSI 232 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhHH
Confidence 22111111011 01111111 11111 11 12334556788888999999999999999999999987 6
Q ss_pred hHHHHHHHHHHHHHHHhH
Q 012371 259 KSIYLLATLYVLTLTLPS 276 (465)
Q Consensus 259 ~~~~~~s~~~~~~~y~~~ 276 (465)
+|+...+...+.++|+..
T Consensus 233 PrAi~~~~~~~~~~y~~~ 250 (457)
T PRK10580 233 PRAINSVPMRILVFYVGT 250 (457)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888877766666677654
No 31
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=99.47 E-value=2.3e-10 Score=118.85 Aligned_cols=348 Identities=11% Similarity=0.023 Sum_probs=184.8
Q ss_pred cCCchhHHHHHHHhhhhhhhhchhHHHHH-hhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccH
Q 012371 37 HGGSVYDAWFSCASNQVAQVLLTLPYSFS-QLGLLSGILLQLFYGLMGSWTAYLISILYVEYRTRKEREKVDFRNHVIQW 115 (465)
Q Consensus 37 ~~~s~~~a~~~l~~~~iG~GiL~lP~a~~-~~G~~~g~i~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y 115 (465)
|+.+.++.....+++++|+|++.+|.... .+|....++..++.++....... +..|..++.|+.+- ..
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al----~~aeL~s~~P~~gG-------G~ 69 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAF----SFQNLANKKPELDG-------GV 69 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHH----HHHHHHhhCCCCCC-------Ch
Confidence 45678899999999999999999998755 46643334445556665555443 44566666654210 34
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccC--CchhhhHh-HHHHHhhhh--ccCCCcchhHHH
Q 012371 116 FEVLDGLLGKHWRNIGLFFNCTFLLFGSVIQLIACASNIYYINDNL--DKRTWTYI-FGACCATTV--FIPSFHNYRIWS 190 (465)
Q Consensus 116 ~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~--~~~~~~ii-~~~v~~pl~--~l~~l~~l~~~s 190 (465)
.+.+++.|||...++..+..++.......++.....+.+.++.+.. ..+.+..+ ..++++.+. ..+..+..+.++
T Consensus 70 y~y~~~~fG~~~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~i~ 149 (468)
T TIGR03810 70 YSYAKAGFGPFMGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFGGGNNPPSIIGASVLLWCVHFLVLRGVEGAAFIN 149 (468)
T ss_pred hhhHHhHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 4557889999999988887766544444455544444444443322 12222222 112222222 223344444444
Q ss_pred HHHHHHHHHHHHHHHHhh--hhcccC-C-C-ccC-----CCCchhhHhHhHHHHHHHHhcCccchHhHhhhccCCccchH
Q 012371 191 FLGLIMTSFTAWYLTIAS--LVHGQV-E-G-VKH-----SGPTKMVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKS 260 (465)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~--~~~g~~-~-~-~~~-----~~~~~~~~~~~a~~~~~faf~~~~~v~~i~~~mk~p~~~~~ 260 (465)
.+..+.-+...+.+++.. ..++.. . + .+. .....+..+..++....|+|.|-+....+.+|.|++++.+|
T Consensus 150 ~i~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~~k~ip~ 229 (468)
T TIGR03810 150 TITTIAKLVPLFVFIVIGIFAFKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEKRSDVGK 229 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccCcccchH
Confidence 333322211111111111 112111 0 0 000 01122345667888899999999999999999999888999
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhhcccccc---cc---ccccccCcccHHHHHHHHHHHHHHHHHHhhhc-cHHHHH---
Q 012371 261 IYLLATLYVLTLTLPSASAVYWAFGDMLLT---HS---NAFSLLPRTGFRDTAVILMLIHQFITFGFACT-PLYFVW--- 330 (465)
Q Consensus 261 ~~~~s~~~~~~~y~~~g~~gy~~fG~~~~~---~~---~il~~l~~~~~~~~~~~~~~i~~~~s~pl~~~-p~~~~~--- 330 (465)
+...+...+.++|+.+.+..+...+++..+ ++ ....+.-.++...+..++.+++.+.+.--... +.|...
T Consensus 230 ai~~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~a~a 309 (468)
T TIGR03810 230 ATVIGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEHMVGTWGAVLINIGLIISILGAWLSWTLLPAEIPLLMA 309 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988776655444322100 11 11112222334455666666666666544442 333221
Q ss_pred -----HHHhcCCCCcchhhHHHhhhhHHHHHHHHHHhcC--CchhhHHhhhhhhhhhhHHhhhhHHHHHHhcch
Q 012371 331 -----EKFIGVHNTKSTFKRALARLPVVIPIWFLAIIFP--FFGPINSTVGSLLVSFTVYIIPALAHMITFAPA 397 (465)
Q Consensus 331 -----~~~~~~~~~~~~~~~~~~r~~~~~~~~~~A~~vp--~~~~i~~lvGs~~~~~l~~ilP~l~~l~~~~~~ 397 (465)
.+.+.+.++++.+.+-+.-...+.....+....+ .++.+.++.+ ....+.|+++++.+++.++++
T Consensus 310 rdg~lP~~f~k~~~~~tP~~al~~~~~i~~~~~l~~~~~~~~~~~l~~~~~--~~~li~y~~~~~~~~~l~~~~ 381 (468)
T TIGR03810 310 KDKLMPKYFGKENANGAPTNALWLTNGLIQIFLLTTLFSEQAYNFAISLAT--SAILVPYLWSAAYQVKLSWRG 381 (468)
T ss_pred hCCCccHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhc
Confidence 1222222223333332222222221121111222 3444555433 245789999999999887654
No 32
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=99.47 E-value=4e-11 Score=118.43 Aligned_cols=341 Identities=12% Similarity=0.092 Sum_probs=214.9
Q ss_pred ccCCchhHHHHHHHhhhhhhhh-chhHHHHHhhchhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 012371 36 WHGGSVYDAWFSCASNQVAQVL-LTLPYSFSQLGLLSGILL-QLFYGLMGSWTAYLISILYVEYRTRKEREKVDFRNHVI 113 (465)
Q Consensus 36 ~~~~s~~~a~~~l~~~~iG~Gi-L~lP~a~~~~G~~~g~i~-l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~ 113 (465)
+++.+.++--+.-+...||+|. ++-..+.+.+| |++++ ..++|++.+.-++.|. |....+|+.|
T Consensus 12 ~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AG--PSvlLaY~I~G~~~f~iMRaLG----Em~~~~p~~g-------- 77 (462)
T COG1113 12 KRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAG--PSVLLAYLIAGIFVFLIMRALG----EMLVANPVSG-------- 77 (462)
T ss_pred hhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhC--cHHHHHHHHHHHHHHHHHHHHH----HHHHhCCCCC--------
Confidence 3445556667888999999998 77888899999 44444 4556666665555554 4444333222
Q ss_pred cHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCchhhhHhHHHHHhh--hhccCCCcchhH-HH
Q 012371 114 QWFEVLDGLLGKHWRNIGLFFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCAT--TVFIPSFHNYRI-WS 190 (465)
Q Consensus 114 ~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~ii~~~v~~p--l~~l~~l~~l~~-~s 190 (465)
|+.+.+++.+|++.+.++++..+.....++.+.+..++..+++|.++.+.+.+.++..+++.- +.-.|.+.++.+ ++
T Consensus 78 SF~~~a~~~lG~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~vP~Wv~al~~~~l~~~~NL~sVk~FGE~EfWfA 157 (462)
T COG1113 78 SFSDYARKYLGPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPDVPQWVFALAAVVLLLAVNLISVKVFGELEFWFA 157 (462)
T ss_pred cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999887555555444433332 333455555443 33
Q ss_pred HHHHHHHH---HHHHHHHHhhhhccc-CCCcc----C--CCCchhhHhHhHHHHHHHHhcCccchHhHhhhccCCccc-h
Q 012371 191 FLGLIMTS---FTAWYLTIASLVHGQ-VEGVK----H--SGPTKMVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKF-K 259 (465)
Q Consensus 191 ~~~~~~~~---~~~~~~~~~~~~~g~-~~~~~----~--~~~~~~~~~~~a~~~~~faf~~~~~v~~i~~~mk~p~~~-~ 259 (465)
++=++.++ ....+++......+. ..+++ + -.|..+.+++.++-+.+|||+|.+.+-.-..|-|||+|- +
T Consensus 158 lIKV~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~k~ip 237 (462)
T COG1113 158 LIKVAAIIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEAKDPEKAIP 237 (462)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhhcChhhHHH
Confidence 33332221 111111111111111 11221 1 146778899999999999999999999999999999874 5
Q ss_pred HHH-----HHHHHHHHHHHHhHHHHHHHhhcccccccccccccc---CcccHHHHHHHHHHHHHHHHHHhhhccHHHHHH
Q 012371 260 SIY-----LLATLYVLTLTLPSASAVYWAFGDMLLTHSNAFSLL---PRTGFRDTAVILMLIHQFITFGFACTPLYFVWE 331 (465)
Q Consensus 260 ~~~-----~~s~~~~~~~y~~~g~~gy~~fG~~~~~~~~il~~l---~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~ 331 (465)
|+. .+.+.++..+.+++.+..+-.++++. ++...-+ +-+....+.|..++.+.+.+.=-.++..-.++.
T Consensus 238 kAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~---SPFV~~f~~iGi~~Aa~i~N~VVLtAa~S~~NSglystsRmL~ 314 (462)
T COG1113 238 KAINSVIWRILIFYVGSLFVILSLYPWNQIGEDG---SPFVTVFSLIGIPFAAGIMNFVVLTAALSALNSGLYSTSRMLY 314 (462)
T ss_pred HHHhhhhHHHHHHHHHHHHHHheeccccccCCCC---CcHHHHHHHcCCcccccceeEEEeechhhcccccccccchHHH
Confidence 543 45666666677777888887777754 3333333 333344555555555555554333344444444
Q ss_pred HHhcC---------CCCcchhhH-HHhhhhHHHHHHHHHHhcCCchhhHHhhhhhh--hhhhHHhhhhHHHHHHhc
Q 012371 332 KFIGV---------HNTKSTFKR-ALARLPVVIPIWFLAIIFPFFGPINSTVGSLL--VSFTVYIIPALAHMITFA 395 (465)
Q Consensus 332 ~~~~~---------~~~~~~~~~-~~~r~~~~~~~~~~A~~vp~~~~i~~lvGs~~--~~~l~~ilP~l~~l~~~~ 395 (465)
.+-.+ -+++....+ +........+..++....| +.++.++=+.. ..+..+.+=.+.|+|.||
T Consensus 315 ~la~~g~APk~~~klsk~gVP~~ai~~s~~~~~~~V~Lny~~P--~~vF~~v~s~s~~~~l~vW~~I~~s~l~~rk 388 (462)
T COG1113 315 SLAKQGDAPKAFAKLSKRGVPVNAILLSAVVLLLGVVLNYILP--EKVFELVTSSSGLGLLFVWLMILLSQLKLRK 388 (462)
T ss_pred HHhhcCcccHhHhhccccCCCHHHHHHHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33211 112222333 5566667778888888899 44444443333 335555666778888888
No 33
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=99.46 E-value=4.9e-10 Score=116.76 Aligned_cols=230 Identities=11% Similarity=0.040 Sum_probs=139.7
Q ss_pred cCCchhHHHHHHHhhhhhhhhchhH-HHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccH
Q 012371 37 HGGSVYDAWFSCASNQVAQVLLTLP-YSFSQLGLLSGILLQLFYGLMGSWTAYLISILYVEYRTRKEREKVDFRNHVIQW 115 (465)
Q Consensus 37 ~~~s~~~a~~~l~~~~iG~GiL~lP-~a~~~~G~~~g~i~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y 115 (465)
++.+.++..+..+..++|+|++..| .+.+++|....+...++.+++.......+ .|+.++.|+.+ -.|
T Consensus 2 r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~----aEl~s~~P~~g-------G~~ 70 (478)
T TIGR00913 2 KSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSL----GEMATFYPVVS-------GSF 70 (478)
T ss_pred CCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHH----HHHHHhCCCCC-------CCH
Confidence 4567888999999999999998766 56777885433455566666655555544 56666665322 167
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCchhhhHhHHHHHhhhhccCCCcchhHHHHHHHH
Q 012371 116 FEVLDGLLGKHWRNIGLFFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLI 195 (465)
Q Consensus 116 ~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~ii~~~v~~pl~~l~~l~~l~~~s~~~~~ 195 (465)
...+++.+||...+++.+..++.....+.......+..+..+.+......|..+..+ ++-+...+..+..+.++.....
T Consensus 71 ~~~~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~in~~gv~~~~~~~~~~~~ 149 (478)
T TIGR00913 71 ATYASRFVDPAFGFAVGWNYWLQWLIVLPLELVTASMTIQYWTDKVNPAVWIAIFYV-FIVIINLFGVKGYGEAEFWFSS 149 (478)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHHHHHHhcchHHHHHHHHHHH
Confidence 788899999999999988877766655555655556666555443333333332211 1112223334444444433221
Q ss_pred HHHHHHH---HHHHhhhhcccC-CC------c-cC-CCCc-----hhhHhHhHHHHHHHHhcCccchHhHhhhccCCcc-
Q 012371 196 MTSFTAW---YLTIASLVHGQV-EG------V-KH-SGPT-----KMVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK- 257 (465)
Q Consensus 196 ~~~~~~~---~~~~~~~~~g~~-~~------~-~~-~~~~-----~~~~~~~a~~~~~faf~~~~~v~~i~~~mk~p~~- 257 (465)
.-+...+ ++.+.....+.+ ++ . ++ ..+. .+.++..++....|+|.|-.....+-+|+|||+|
T Consensus 150 ~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~ 229 (478)
T TIGR00913 150 IKILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGEAANPRKS 229 (478)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHhhcChhhH
Confidence 1111111 111111111110 00 0 00 0111 2566788888899999999999999999999965
Q ss_pred chHHHHHHHHHHHHHHHhHHH
Q 012371 258 FKSIYLLATLYVLTLTLPSAS 278 (465)
Q Consensus 258 ~~~~~~~s~~~~~~~y~~~g~ 278 (465)
.+|+...+...+.++|+...+
T Consensus 230 iPrai~~~~~~~~~~Y~l~~~ 250 (478)
T TIGR00913 230 IPRAAKRTFWRILVFYILTLF 250 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 799999999888888887543
No 34
>PRK11021 putative transporter; Provisional
Probab=99.45 E-value=2.9e-10 Score=116.06 Aligned_cols=224 Identities=8% Similarity=0.016 Sum_probs=129.8
Q ss_pred chhHHHHHHHhhhhhhhhchhHHH-HHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccHHHH
Q 012371 40 SVYDAWFSCASNQVAQVLLTLPYS-FSQLGLLSGILLQLFYGLMGSWTAYLISILYVEYRTRKEREKVDFRNHVIQWFEV 118 (465)
Q Consensus 40 s~~~a~~~l~~~~iG~GiL~lP~a-~~~~G~~~g~i~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~l 118 (465)
+.+++....+++|+|+|++.+|.. .+++|- ..++..++.++........+ .|..++.|++| .....
T Consensus 2 g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~-~~~~~~~i~~~~~~~~al~~----aEl~s~~P~aG--------G~y~y 68 (410)
T PRK11021 2 GLWQGIGLLSTSLLGTGVFAVPALAALVAGN-NSLWAWPLLILLIFPIAIVF----ARLGRHFPHAG--------GPAHF 68 (410)
T ss_pred cHHHHHHHHHHHHHhhHHHHhHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHH----HHHHHhCCCCC--------CHHHh
Confidence 567888999999999999999966 444663 34555555555555444444 56667766555 55567
Q ss_pred HHHhhchhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCchhhhHhHHHHHhhhhccCCCcchhHHHHHHHHHHH
Q 012371 119 LDGLLGKHWRNIGLFFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLIMTS 198 (465)
Q Consensus 119 ~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~ii~~~v~~pl~~l~~l~~l~~~s~~~~~~~~ 198 (465)
.++.+||+..++..+..+........+........+..+.+......+. +..++.+.+..+ |+...+..+.+..+..+
T Consensus 69 ~~~~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l-n~~Gv~~~~~~~~~~~~ 146 (410)
T PRK11021 69 VGMAFGPRLGRVTGWLFLSVIPVGLPAALQIAAGFGQALFGWSSWQLLL-AELLTLALLWLL-NLRGASSSANLQTVIAL 146 (410)
T ss_pred HHHHhCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCchHHH-HHHHHHHHHHHH-HHhhHHHHHHHHHHHHH
Confidence 7889999999888876654322222222222233333332221111111 111112222222 33333333333333222
Q ss_pred HHHHHHHHhhhhccc--CCCc--cCCCCchhhHhHhHHHHHHHHhcCccchHhHhhhccCCc-cchHHHHHHHHHHHHHH
Q 012371 199 FTAWYLTIASLVHGQ--VEGV--KHSGPTKMVLYFTGATNILYTFGGHAVTVEIMHAMWKPQ-KFKSIYLLATLYVLTLT 273 (465)
Q Consensus 199 ~~~~~~~~~~~~~g~--~~~~--~~~~~~~~~~~~~a~~~~~faf~~~~~v~~i~~~mk~p~-~~~~~~~~s~~~~~~~y 273 (465)
.....+ ......+. +.+. +...+.++.++..++....|+|.|...+...-+|+|||+ +.+|+...++..+.++|
T Consensus 147 ~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k~iPrAi~~~~~~~~~lY 225 (410)
T PRK11021 147 LIVALV-VAIWWAGDIKPADIPFPAPGSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPRALMIGLLLAGLVY 225 (410)
T ss_pred HHHHHH-HHHHHHcCCchhcCCCCCCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCccccccHHHHHHHHHHHHHH
Confidence 111111 11111121 1111 111234567788899999999999999999999999996 57999999999999999
Q ss_pred HhHHHH
Q 012371 274 LPSASA 279 (465)
Q Consensus 274 ~~~g~~ 279 (465)
++..+.
T Consensus 226 il~~~~ 231 (410)
T PRK11021 226 WACTVV 231 (410)
T ss_pred HHHHHH
Confidence 876544
No 35
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=99.44 E-value=1.9e-10 Score=121.38 Aligned_cols=345 Identities=12% Similarity=0.046 Sum_probs=181.3
Q ss_pred ccccCCchhHHHHHHHhhhhhhhhchhHHHH--HhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccc
Q 012371 34 FFWHGGSVYDAWFSCASNQVAQVLLTLPYSF--SQLGLLSGILLQLFYGLMGSWTAYLISILYVEYRTRKEREKVDFRNH 111 (465)
Q Consensus 34 ~~~~~~s~~~a~~~l~~~~iG~GiL~lP~a~--~~~G~~~g~i~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~~~~~~~ 111 (465)
+.+++.+.++....-+..++|+|+..+|... ..+|.. .++..++.++.+... ..|+.|+.++.|+.|-
T Consensus 25 ~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~-~~ls~liagv~~l~~----al~yaElas~~P~sGg----- 94 (557)
T TIGR00906 25 KMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPA-IVLSFLISGLAAVLS----GFCYAEFGARVPKAGS----- 94 (557)
T ss_pred chhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcH-HHHHHHHHHHHHHHH----HHHHHHHHHhCCCCCc-----
Confidence 3456788999999999999999999998643 347854 344444455544443 4455677788776663
Q ss_pred cccHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhc----------------cCCchhhhHhHH-HHH
Q 012371 112 VIQWFEVLDGLLGKHWRNIGLFFNCTFLLFGSVIQLIACASNIYYIND----------------NLDKRTWTYIFG-ACC 174 (465)
Q Consensus 112 ~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~----------------~~~~~~~~ii~~-~v~ 174 (465)
.....++.+|+...+++.+..++.....+.+.....++.+..+.. ..+.....+... +++
T Consensus 95 ---~Y~y~~~~~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l 171 (557)
T TIGR00906 95 ---AYLYSYVTVGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILL 171 (557)
T ss_pred ---ceeeHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHHHHHHH
Confidence 223345678999999888876654443333322222222221100 000111111111 111
Q ss_pred hhhhccCCCcchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCcc--------CCCCchhhHhHhHHHHHHHHhcCccchH
Q 012371 175 ATTVFIPSFHNYRIWSFLGLIMTSFTAWYLTIASLVHGQVEGVK--------HSGPTKMVLYFTGATNILYTFGGHAVTV 246 (465)
Q Consensus 175 ~pl~~l~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~~--------~~~~~~~~~~~~a~~~~~faf~~~~~v~ 246 (465)
+-+...+..+..++++.+..+.-+...+.+++....+.+.++.. +..|..+.+++.+.....|+|.|-..+.
T Consensus 172 ~~~ln~~Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~ 251 (557)
T TIGR00906 172 LAVLLSFGVKESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIA 251 (557)
T ss_pred HHHHHHhchhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHH
Confidence 11223344555555544433332222112222233233222211 1123345678889999999999999999
Q ss_pred hHhhhccCCcc-chHHHHHHHHHHHHHHHhHHHHHHHhhccc-cccccc---cccccCcccHHHHHHHHHHHHHHHHHHh
Q 012371 247 EIMHAMWKPQK-FKSIYLLATLYVLTLTLPSASAVYWAFGDM-LLTHSN---AFSLLPRTGFRDTAVILMLIHQFITFGF 321 (465)
Q Consensus 247 ~i~~~mk~p~~-~~~~~~~s~~~~~~~y~~~g~~gy~~fG~~-~~~~~~---il~~l~~~~~~~~~~~~~~i~~~~s~pl 321 (465)
..-+|+|||+| .+|+...++.+++++|.++.+.-...-+.+ ..+++. .+.....++...+..+......+.+...
T Consensus 252 ~~aeE~knP~r~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~~g~~~~~~ii~~~~~~~~~~sl~~ 331 (557)
T TIGR00906 252 TTGEEVKNPQRAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYVGWGPAKYIVAVGALCGMSTSLLG 331 (557)
T ss_pred HhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999976 799999999999999987654433222211 100111 2222222334444455555555544443
Q ss_pred hhccHHHHHHHH---------hcC-CCCcchhhHHHhhhhHHHHHHHHHHhcCCchhhHHhhhhhhhhhhHHhhhhHHHH
Q 012371 322 ACTPLYFVWEKF---------IGV-HNTKSTFKRALARLPVVIPIWFLAIIFPFFGPINSTVGSLLVSFTVYIIPALAHM 391 (465)
Q Consensus 322 ~~~p~~~~~~~~---------~~~-~~~~~~~~~~~~r~~~~~~~~~~A~~vp~~~~i~~lvGs~~~~~l~~ilP~l~~l 391 (465)
.+...-+.+..+ +.+ +++.+.+.+-..-. .+++.+++.. .+++.+.++. ..+..+.|.+++...+
T Consensus 332 ~~~~~sRil~amarDGlLP~~fakv~~r~~tP~~Ail~~--~iv~~il~~~-~~~~~l~~l~--sig~ll~y~lv~~~~l 406 (557)
T TIGR00906 332 GMFPLPRVIYAMARDGLLFKWLAQINSKTKTPINATVVS--GAIAALMAFL-FDLKALVDLL--SIGTLLAYSLVAACVL 406 (557)
T ss_pred HHHHHHHHHHHHHcCCCccHHHhccCCCCCCcHHHHHHH--HHHHHHHHHH-cCHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 333333322222 111 21222222222111 2222233333 3466666654 2345789999988887
Q ss_pred HHhcc
Q 012371 392 ITFAP 396 (465)
Q Consensus 392 ~~~~~ 396 (465)
..|++
T Consensus 407 ~lR~~ 411 (557)
T TIGR00906 407 ILRYQ 411 (557)
T ss_pred Hhhcc
Confidence 77754
No 36
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=99.44 E-value=4.6e-10 Score=115.73 Aligned_cols=230 Identities=10% Similarity=-0.039 Sum_probs=134.4
Q ss_pred ccccCCchhHHHHHHHhhhhhhhhchhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 012371 34 FFWHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGLLSGILLQLFYGLMGSWTAYLISILYVEYRTRKEREKVDFRNHVI 113 (465)
Q Consensus 34 ~~~~~~s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~ 113 (465)
+.+++.+.++.....+..++|....+.+.++++.|+..-++..++.+++...... ++.|...+.|.+|
T Consensus 4 ~l~r~l~~~~~~~l~~~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~----~~aEl~s~~P~~G-------- 71 (442)
T TIGR00908 4 QLKKTLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCF----SLAELSTMIPTAG-------- 71 (442)
T ss_pred hhhccCCHHHHHHhHHHHHhhccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHH----HHHHHHHHcCCCC--------
Confidence 3455678888888888889984445668888899986433444444444333333 3456677776554
Q ss_pred cHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCchhhhHhHHHHHhhhhccCCCcchhHHHHHH
Q 012371 114 QWFEVLDGLLGKHWRNIGLFFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLG 193 (465)
Q Consensus 114 ~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~ii~~~v~~pl~~l~~l~~l~~~s~~~ 193 (465)
......++.+||..+++..+..+........++....++.+..+.+......+.++...+.. +...+..+..++++...
T Consensus 72 g~y~~~~~~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~~~~~~~~~~~~~~~~-~ln~~g~~~~~~i~~~~ 150 (442)
T TIGR00908 72 GGYGFARRAFGPWGGFLAGTAILIEFAFAPPAIACFIGAYCESLFPVGPGWLAALVFYIVFI-GINILGVGEAAKLEFVV 150 (442)
T ss_pred CHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHH-HHHHHHHHHHHhHHHHH
Confidence 55567788999999998888777766666666666667766666554333222222111111 11222233333333222
Q ss_pred HHHHHHHHHHHHHhhhhcccCCC-cc-------CCCCchhhHhHhHHHHHHHHhcCccchHhHhhhccCCcc-chHHHHH
Q 012371 194 LIMTSFTAWYLTIASLVHGQVEG-VK-------HSGPTKMVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKSIYLL 264 (465)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~g~~~~-~~-------~~~~~~~~~~~~a~~~~~faf~~~~~v~~i~~~mk~p~~-~~~~~~~ 264 (465)
.+..+.....+......+.+..+ .+ ...+..+.+++.++....|+|.|.......-+|+|||+| .+|+...
T Consensus 151 ~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iprai~~ 230 (442)
T TIGR00908 151 TAVAIIALGVFIGAMVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPKRDIPRGLIG 230 (442)
T ss_pred HHHHHHHHHHHHHHHhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCHHHHH
Confidence 21111111111111111101000 00 011223456778888889999999999999999999965 7999888
Q ss_pred HHHHHHHHHHhH
Q 012371 265 ATLYVLTLTLPS 276 (465)
Q Consensus 265 s~~~~~~~y~~~ 276 (465)
++.++.++|+.+
T Consensus 231 s~~~~~~~~~~~ 242 (442)
T TIGR00908 231 AILTLLALAAGI 242 (442)
T ss_pred HHHHHHHHHHHH
Confidence 888777777654
No 37
>TIGR00930 2a30 K-Cl cotransporter.
Probab=99.43 E-value=2.9e-10 Score=125.75 Aligned_cols=229 Identities=14% Similarity=0.082 Sum_probs=139.2
Q ss_pred cCCchhHHHHHH-Hhhhhhhhh-chhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhcccccccccc
Q 012371 37 HGGSVYDAWFSC-ASNQVAQVL-LTLPYSFSQLGLLSGILLQLFYGLMGSWTAYLISILYVEYRTR-KEREKVDFRNHVI 113 (465)
Q Consensus 37 ~~~s~~~a~~~l-~~~~iG~Gi-L~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~ll~~~~~~~~~~-~~~~~~~~~~~~~ 113 (465)
++-+.++.++.- +.+++|+|+ +.+++...++|...+++.+++.++++..++.-+.+ ...+ .++.|
T Consensus 76 ~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~se----iaTng~p~aG-------- 143 (953)
T TIGR00930 76 VKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSA----IATNGVVKGG-------- 143 (953)
T ss_pred cccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH----HHhcCCCCcc--------
Confidence 455566555555 999999999 55778888999877888888888888888777643 3443 33333
Q ss_pred cHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCC------chhhhHhHHHH-HhhhhccCCCcch
Q 012371 114 QWFEVLDGLLGKHWRNIGLFFNCTFLLFGSVIQLIACASNIYYINDNLD------KRTWTYIFGAC-CATTVFIPSFHNY 186 (465)
Q Consensus 114 ~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~------~~~~~ii~~~v-~~pl~~l~~l~~l 186 (465)
.-..+.++++|+..+..+.+..++.....+..|.+..++.+..+.+..+ ......+++.+ ++.+..+ ++...
T Consensus 144 G~Y~yisralGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~~~~~~~~~~~iia~i~l~ll~~I-n~~Gv 222 (953)
T TIGR00930 144 GAYYLISRSLGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSKIMVDPINDIRIYGTVTVVVLLGI-SFAGM 222 (953)
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCccccchHHHHHHHHHHHHH-HHhhH
Confidence 2233557788999888888877776666777777777776655432111 00001111211 1112111 33444
Q ss_pred hHHHHHHHHHHHH---HHHHHHHhhhhccc-CC-----C-----ccC----CCCchhhHhHhHHHHHHHHhcCccchHhH
Q 012371 187 RIWSFLGLIMTSF---TAWYLTIASLVHGQ-VE-----G-----VKH----SGPTKMVLYFTGATNILYTFGGHAVTVEI 248 (465)
Q Consensus 187 ~~~s~~~~~~~~~---~~~~~~~~~~~~g~-~~-----~-----~~~----~~~~~~~~~~~a~~~~~faf~~~~~v~~i 248 (465)
++.+-+..+.++. ..+.+++..+.... .+ + ... ..+.....++..++++.+||.|......+
T Consensus 223 k~~ak~q~vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~ 302 (953)
T TIGR00930 223 EWENKAQVLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANI 302 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555544443321 11111111111100 00 0 000 01111123777888888899999999999
Q ss_pred hhhccCCcc-chHHHHHHHHHHHHHHHhHHH
Q 012371 249 MHAMWKPQK-FKSIYLLATLYVLTLTLPSAS 278 (465)
Q Consensus 249 ~~~mk~p~~-~~~~~~~s~~~~~~~y~~~g~ 278 (465)
-.|+|+|+| .++....++.+++++|+++.+
T Consensus 303 sgElKnP~r~IPratl~ai~i~~vlYllv~~ 333 (953)
T TIGR00930 303 SGDLKDPQKAIPKGTLLAILTTTVVYLGSVV 333 (953)
T ss_pred HHhccChhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999976 799999999999999988764
No 38
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=99.40 E-value=1.4e-09 Score=112.05 Aligned_cols=332 Identities=12% Similarity=0.074 Sum_probs=174.7
Q ss_pred HhhhhhhhhchhHH-HHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccHHHHHHHhhchhh
Q 012371 49 ASNQVAQVLLTLPY-SFSQLGLLSGILLQLFYGLMGSWTAYLISILYVEYRTRKEREKVDFRNHVIQWFEVLDGLLGKHW 127 (465)
Q Consensus 49 ~~~~iG~GiL~lP~-a~~~~G~~~g~i~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~ 127 (465)
++++||+|++..|. +.+++|. ..++..++.+++.......+ .|...+.|++| +..+.+++.+||..
T Consensus 4 ig~~IGsGif~~~g~~~~~aG~-~~ll~~~i~gi~~~~~al~~----aEL~s~~P~~G--------g~y~y~~~~~G~~~ 70 (446)
T PRK10197 4 IAGVIGASLFVGSSVAIAEAGP-AVLLAYLFAGLLVVMIMRML----AEMAVATPDTG--------SFSTYADKAIGRWA 70 (446)
T ss_pred ecchhHhHHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHH----HHHHHhCCCCC--------CHHHHHHHHcChHH
Confidence 57899999988886 7888996 35666666666666554444 56666666544 66777889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCchhhhHhHHHHHhhhhccCCCcchhHHHHHHHHHHHHHHHHHHHh
Q 012371 128 RNIGLFFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLIMTSFTAWYLTIA 207 (465)
Q Consensus 128 ~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~ii~~~v~~pl~~l~~l~~l~~~s~~~~~~~~~~~~~~~~~ 207 (465)
.+++.+..++.....+.......+..++.+.+..+...+.++...+.. +......+..+.+.....+.-+...+.+++.
T Consensus 71 gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~lN~~gv~~~~~i~~~~~~~ki~~li~~ii~ 149 (446)
T PRK10197 71 GYTIGWLYWWFWVLVIPLEANIAAMILHSWVPGIPIWLFSLVITLALT-GSNLLSVKNYGEFEFWLALCKVIAILAFIFL 149 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHH-HHHHHhhHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 999888877655544444433334344444333222222222111111 1112223333333322222111111111111
Q ss_pred hh--hcccCC-----Cc----cC--CCCchhhHhHhHHHHHHHHhcCccchHhHhhhccCCcc-chHHHHHHHHHHHHHH
Q 012371 208 SL--VHGQVE-----GV----KH--SGPTKMVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKSIYLLATLYVLTLT 273 (465)
Q Consensus 208 ~~--~~g~~~-----~~----~~--~~~~~~~~~~~a~~~~~faf~~~~~v~~i~~~mk~p~~-~~~~~~~s~~~~~~~y 273 (465)
.+ ..|..+ +. +. ..+..+.++..++....|+|.|-..+.....|+|||+| .+|+...++..+.++|
T Consensus 150 ~~~~~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r~iPrai~~~~~~i~i~Y 229 (446)
T PRK10197 150 GAVAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRATNSVIWRISIFY 229 (446)
T ss_pred HHHHhcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHH
Confidence 11 122111 11 00 11334567889999999999999999999999999976 7898888888788888
Q ss_pred HhHHHHHHHhhccccccc---c---ccccccCcccHHHHHHHHHHHHHHHHHHhhhccHHHHHHHH---------hcCCC
Q 012371 274 LPSASAVYWAFGDMLLTH---S---NAFSLLPRTGFRDTAVILMLIHQFITFGFACTPLYFVWEKF---------IGVHN 338 (465)
Q Consensus 274 ~~~g~~gy~~fG~~~~~~---~---~il~~l~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~---------~~~~~ 338 (465)
+...+.-......+..+. + ...+....++...+.+...+++.+.+.--.+....+.+..+ +++.+
T Consensus 230 il~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ardg~lP~~~~~~~ 309 (446)
T PRK10197 230 LCSIFVVVALIPWNMPGLKAVGSYRSVLELLNIPHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPAVMGKIN 309 (446)
T ss_pred HHHHHHHheecCcCcccccccCcHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHhhC
Confidence 765444222222111100 0 11222332334455555555655555544443333322222 11112
Q ss_pred CcchhhHHHhhh-hHHHHHHHHHHhcC--CchhhHHhhhhhhhhhhHHhhhhHHHHHHhcc
Q 012371 339 TKSTFKRALARL-PVVIPIWFLAIIFP--FFGPINSTVGSLLVSFTVYIIPALAHMITFAP 396 (465)
Q Consensus 339 ~~~~~~~~~~r~-~~~~~~~~~A~~vp--~~~~i~~lvGs~~~~~l~~ilP~l~~l~~~~~ 396 (465)
+++.+.+-+.-. .+..+..+.....| .++.++++.+... .+.|.++++.+++.||+
T Consensus 310 ~~~~P~~Ail~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~--li~y~~~~~a~i~lr~~ 368 (446)
T PRK10197 310 RSKTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIA--LLVYLVIAVSQLRMRKI 368 (446)
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 222223322212 12222222222223 3566666655544 58899999999998875
No 39
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=99.34 E-value=1.6e-09 Score=113.57 Aligned_cols=239 Identities=10% Similarity=0.086 Sum_probs=134.1
Q ss_pred cccccCCchhHHHHHHHhhhhhhhhchhHHH-HHhhchhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccc
Q 012371 33 SFFWHGGSVYDAWFSCASNQVAQVLLTLPYS-FSQLGLLSGI--LLQLFYGLMGSWTAYLISILYVEYRTRKEREKVDFR 109 (465)
Q Consensus 33 ~~~~~~~s~~~a~~~l~~~~iG~GiL~lP~a-~~~~G~~~g~--i~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~~~~~ 109 (465)
++.+++.+.+++....+++++|+|++..|.. .+++|-. |. +..++.+++.......+ .|...+.|++|
T Consensus 38 ~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~-g~~~~~~ii~~i~~~~~al~~----aELas~~P~sG---- 108 (501)
T TIGR00911 38 VALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSV-GLALIMWAVCGIFSIVGALVY----AELGTTIPKSG---- 108 (501)
T ss_pred cccCccccHhHhhHhheeceEEeeEeecHHHHHhhCCCh-HHHHHHHHHHHHHHHHHHHHH----HHHHhhcCCCC----
Confidence 3466778899999999999999999998865 5556743 32 33445555444444444 56666666554
Q ss_pred cccccHHHHHHHhhchhhHHHHHHHHHH-HHHHHHHHHHHHhHhhh-hhhhccCCchhh--hHhHHHHHhhhh--ccCCC
Q 012371 110 NHVIQWFEVLDGLLGKHWRNIGLFFNCT-FLLFGSVIQLIACASNI-YYINDNLDKRTW--TYIFGACCATTV--FIPSF 183 (465)
Q Consensus 110 ~~~~~y~~l~~~~~G~~~~~~~~~~~~~-~~~g~~~~y~i~~~~~l-~~~~~~~~~~~~--~ii~~~v~~pl~--~l~~l 183 (465)
......++.+||...++..+.... ...+.+..+....++.+ ..+.+......| .++..++++.+. ..+..
T Consensus 109 ----G~y~~~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~i~~~~i~~~~~ln~~Gv 184 (501)
T TIGR00911 109 ----GEYNYILEVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPDCEVPEWAIRLVAVLCVLLLTLVNCLSV 184 (501)
T ss_pred ----chhhhHHhHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHhhh
Confidence 344555678999988877665432 11222333333334332 222222211112 222222222222 22333
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhh---hhcccCCCccC-----CCCchhhHhHhHHHHHHHHhcCccchHhHhhhccCC
Q 012371 184 HNYRIWSFLGLIMTSFTAWYLTIAS---LVHGQVEGVKH-----SGPTKMVLYFTGATNILYTFGGHAVTVEIMHAMWKP 255 (465)
Q Consensus 184 ~~l~~~s~~~~~~~~~~~~~~~~~~---~~~g~~~~~~~-----~~~~~~~~~~~a~~~~~faf~~~~~v~~i~~~mk~p 255 (465)
+...+++.+.....+...+.+++.. ...+...+.+. ....+..++..++....|+|.|-..+..+.+|+|||
T Consensus 185 k~~~~~~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~knP 264 (501)
T TIGR00911 185 KWATRVQDIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEVKNP 264 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCCCCcHHHHHHHHHHHHHHHHhHHHHhhhHHHhcCc
Confidence 4444444333322222111111111 11222111111 111234567788889999999999999999999999
Q ss_pred cc-chHHHHHHHHHHHHHHHhHHHHHHHhh
Q 012371 256 QK-FKSIYLLATLYVLTLTLPSASAVYWAF 284 (465)
Q Consensus 256 ~~-~~~~~~~s~~~~~~~y~~~g~~gy~~f 284 (465)
+| .+|+...+...+.++|++..+.-....
T Consensus 265 ~r~iPrAi~~s~~~v~~~Y~l~~~a~~~~~ 294 (501)
T TIGR00911 265 YRTLPIAIIISMPIVTFIYVLTNIAYFTVL 294 (501)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 65 799999999999999988755443333
No 40
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=99.32 E-value=2.3e-09 Score=109.98 Aligned_cols=339 Identities=14% Similarity=0.114 Sum_probs=187.9
Q ss_pred chhHHHHHHHhhhhhhhhchhHHHHHhhchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhcccccccccccHHHH
Q 012371 40 SVYDAWFSCASNQVAQVLLTLPYSFSQLGLLSGILLQLFYGLMG-SWTAYLISILYVEYRTRKEREKVDFRNHVIQWFEV 118 (465)
Q Consensus 40 s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~~~g~i~l~~~~~~~-~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~l 118 (465)
+.+++....++.++|+|+...| ...+.|.. .++..++.+++. ....... .|..++.|++| .....
T Consensus 2 ~~~~~~~l~~~~~~g~gi~~~~-~~~~~G~~-~~~~~~i~~~~~~l~~a~~~----~el~~~~p~~G--------G~y~~ 67 (426)
T PF13520_consen 2 GLFSAIALVIGSIIGSGIFFSP-AAASAGPS-AILAWIIAALLFFLPIALSY----AELSSAYPSAG--------GIYVW 67 (426)
T ss_dssp -HHHHHHHHHHCHHTTTTTTHH-HHTCTGCH-HHHHHHHHHHHHHHHHHHHH----HHHHTTTTSST--------THHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-HHHHHhHH-HHHHHHHHHHHHHHHHHHHH----HHHhccCCCcC--------eeeeh
Confidence 5788999999999999999999 77777764 344444444443 3333333 45555555444 66678
Q ss_pred HHHhhchhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh-hccCCchhh-hHhHHH-HHh--hhhccCCCcchhHHHHHH
Q 012371 119 LDGLLGKHWRNIGLFFNCTFLLFGSVIQLIACASNIYYI-NDNLDKRTW-TYIFGA-CCA--TTVFIPSFHNYRIWSFLG 193 (465)
Q Consensus 119 ~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~-~~~~~~~~~-~ii~~~-v~~--pl~~l~~l~~l~~~s~~~ 193 (465)
.++.+||+.+++..+...........++.....+.+.+. .++.....| ..+.++ ++. -....+..|..++++...
T Consensus 68 ~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~ 147 (426)
T PF13520_consen 68 VSRAFGPFWGFIVGWLYWVAYILSLASVASSFASYLLSLFGPDLNPSPWPQFLIAIILILLFTLLNLLGIKLSGKIQNIL 147 (426)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTGGGTCSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred hhhcccccchhcccceeEEEeeccccccccchhhhhhhccccccccccchheeeeecccccceEeeechhhhhhhhhhhh
Confidence 888999999999888887777766666666666666554 233322111 222222 222 222233444444444433
Q ss_pred HHHHH-HHHHHHHHhhhhcccCCCc-------cCCCCchhhHhHhHHHHHHHHhcCccchHhHhhhccCCccchHHHHHH
Q 012371 194 LIMTS-FTAWYLTIASLVHGQVEGV-------KHSGPTKMVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKSIYLLA 265 (465)
Q Consensus 194 ~~~~~-~~~~~~~~~~~~~g~~~~~-------~~~~~~~~~~~~~a~~~~~faf~~~~~v~~i~~~mk~p~~~~~~~~~s 265 (465)
.+..+ ...+++++..+...+.+.. +...+.....++.+++...|+|.|-+......+|+|+ |+.+|+...+
T Consensus 148 ~~~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~-k~ip~ai~~~ 226 (426)
T PF13520_consen 148 TVIKIVIPLLVLIILGIVSFSFSGFNSLSFSLSTFFPSGWPGFLAGFSVAFFAFSGFEAIASLAEENKN-KTIPRAIIIS 226 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCHHH----SHSCSSCSSSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS-HHHHHHHHHH
T ss_pred hhhhhhhhhhhheeEEEeeecccccccccccccccCCccccchhhHHHHHHhhcccccccccccccccc-hhheeecccc
Confidence 33333 1211222223332221111 1122334445788899999999999999999999998 7899999999
Q ss_pred HHHHHHHHHhHHHHHHHhhccccccc-cccc-------cccCcccHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHhc--
Q 012371 266 TLYVLTLTLPSASAVYWAFGDMLLTH-SNAF-------SLLPRTGFRDTAVILMLIHQFITFGFACTPLYFVWEKFIG-- 335 (465)
Q Consensus 266 ~~~~~~~y~~~g~~gy~~fG~~~~~~-~~il-------~~l~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~-- 335 (465)
...+.++|.+....-....+++..+. ++.. +....++...+..+...+..+.+....+....+.+..+-+
T Consensus 227 ~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~d~ 306 (426)
T PF13520_consen 227 IIIVAIIYILFSIALLGALPDDELANSSNSPSPFAVLASAVGGSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMARDG 306 (426)
T ss_dssp HHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHhhhhheeeecccchhhhcccccccccchhhccccccccccccccccccccccccchhhcchhhccccccccc
Confidence 99999999887666666655532111 1211 1111234555666666666666665555444443333321
Q ss_pred -------CCCCcchhhHHHhhhhHHHHHHHHHH---hcC--CchhhHHhhhhhhhhhhHHhhhhHHHHHHhcch
Q 012371 336 -------VHNTKSTFKRALARLPVVIPIWFLAI---IFP--FFGPINSTVGSLLVSFTVYIIPALAHMITFAPA 397 (465)
Q Consensus 336 -------~~~~~~~~~~~~~r~~~~~~~~~~A~---~vp--~~~~i~~lvGs~~~~~l~~ilP~l~~l~~~~~~ 397 (465)
+.+|++.+.+-.. ...+.+.++.. ..| +++.+.+. +.....+.|+++.+.+++.++++
T Consensus 307 ~lP~~~~~~~k~~~P~~a~~--~~~~i~~i~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~ 376 (426)
T PF13520_consen 307 VLPKWFAKVNKFGTPYNAII--LVAVISSILLLLFLFIPQSSFDILVSL--SSVGYLISYILVILAVLFLRRKR 376 (426)
T ss_dssp SSSGGGGTTSSSSSCHHHHH--HHHHHHHHHHHHTTTSSSSHHHHHHHH--HHHHTHHHHHHHHHHHHHTHHHS
T ss_pred chhhhhhhccccCCceeeeh--hhhHHHHHHHHHHHhhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhc
Confidence 1111112222222 12222222221 234 33444443 33356777888887777776554
No 41
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=99.28 E-value=3.3e-09 Score=104.62 Aligned_cols=287 Identities=15% Similarity=0.085 Sum_probs=176.7
Q ss_pred CCchhHHHHHHHhhhhhhhhchhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccHHH
Q 012371 38 GGSVYDAWFSCASNQVAQVLLTLPYSFSQLGLLSGILLQLFYGLMGSWTAYLISILYVEYRTRKEREKVDFRNHVIQWFE 117 (465)
Q Consensus 38 ~~s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~ 117 (465)
|.|..|....+..+++|+|++.+|....+.+ --|.+..++.+........++.+. .+|.| + ++..|
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~-~d~Wi~~ll~~~~~l~~~~l~~~l----~~~~p--~-------~~l~~ 66 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQA-GDAWISVLLGGLIGLLLALLIYYL----LKRFP--G-------KTLVE 66 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHHHHHHH----HHHCC--C-------CCHHH
Confidence 4578899999999999999999999876643 122333333334444344444333 23321 2 28999
Q ss_pred HHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh-hccCCchhhhHhHHHHHhhhhccCCCcchhHHHHHHHHH
Q 012371 118 VLDGLLGKHWRNIGLFFNCTFLLFGSVIQLIACASNIYYI-NDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLIM 196 (465)
Q Consensus 118 l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~-~~~~~~~~~~ii~~~v~~pl~~l~~l~~l~~~s~~~~~~ 196 (465)
..++.+||+.+++..+....+.+......+...++.++.. .++.+.. .......+..-....+.++.+...+.+-...
T Consensus 67 ~~~~~~Gk~lg~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~lp~TP~~-~i~~~~ll~~~y~a~~G~e~i~R~~~~~~~~ 145 (320)
T PF03845_consen 67 ISEKLFGKWLGKIINLLYILYFLLISALVLREFSEFIKTYLLPETPIW-VIILLFLLVAAYAARKGIEVIARVAEILFPI 145 (320)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCHH-HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 9999999999998888888877777777777777776653 3332222 2222222333334445667777655444433
Q ss_pred HHHHHHHHHHhhhhcccCCCccCCCCchhhHhHhHHHHHHHHhcCccchHhHhhhccCCccchHHHHHHHHHHHHHHHhH
Q 012371 197 TSFTAWYLTIASLVHGQVEGVKHSGPTKMVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKSIYLLATLYVLTLTLPS 276 (465)
Q Consensus 197 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~v~~i~~~mk~p~~~~~~~~~s~~~~~~~y~~~ 276 (465)
.+...+.+......+.+.+...+-.+.+..+.+.+.-...+.|.+...+.-+...+|+|++.+|....+.....++|...
T Consensus 146 ~~i~~~~i~~~~~~~~~~~~l~P~~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~k~~~~~~~~~~~~~~~~ 225 (320)
T PF03845_consen 146 FLILLLLILLLSIPNIDWDNLLPVLESGIKPILKGSLVISFPFGGIEILLFLFPFVKDKKKLKKSLLIAILISGLFLLFI 225 (320)
T ss_pred HHHHHHHHHHHhcccCCHHHeeCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHH
Confidence 33222222222232333333334445667778888778888898888888899999999999999999998888888888
Q ss_pred HHHHHHhhcccccccc--cc---ccccCcc-c---HHHHHHHHHHHHHHHHHHhhhccHHHHHHHHhcCCCC
Q 012371 277 ASAVYWAFGDMLLTHS--NA---FSLLPRT-G---FRDTAVILMLIHQFITFGFACTPLYFVWEKFIGVHNT 339 (465)
Q Consensus 277 g~~gy~~fG~~~~~~~--~i---l~~l~~~-~---~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~ 339 (465)
-+.....||.+..++. +. ....+-+ - +-.+.-.......+...-+..+...+.+.+.++.+++
T Consensus 226 ~~~~i~vfG~~~~~~~~~P~~~~~~~i~i~~fieRld~~~i~~w~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 297 (320)
T PF03845_consen 226 IFITIGVFGPELAKKLTYPVLELARSIEIGDFIERLDSIFILIWIIGIFIKISLYLYAASEGLSQLFKLKDY 297 (320)
T ss_pred HHHHHHhcCHHHHhceecHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 8888888886531110 01 1111101 1 1112223334555566666677788888888864443
No 42
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=99.24 E-value=1.1e-08 Score=103.33 Aligned_cols=348 Identities=10% Similarity=-0.012 Sum_probs=206.9
Q ss_pred cccCCchhHHHHHHHhhhhhhhh-chhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 012371 35 FWHGGSVYDAWFSCASNQVAQVL-LTLPYSFSQLGLLSGILLQLFYGLMGSWTAYLISILYVEYRTRKEREKVDFRNHVI 113 (465)
Q Consensus 35 ~~~~~s~~~a~~~l~~~~iG~Gi-L~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~ 113 (465)
.+++...+...+.-+...||+|. ++.-.+.+++|-..-++...+++.+.++.+.-|. |+....|++|
T Consensus 42 lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLG----Ema~~~P~sG-------- 109 (541)
T COG0833 42 LKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLG----ELAVFYPVSG-------- 109 (541)
T ss_pred hhhhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHH----HHHhhcCCCC--------
Confidence 44555677788899999999998 6799999999998888888888888887777775 4455555433
Q ss_pred cHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccC-CchhhhHhHHHHHhhhhc--cCCCcchh-HH
Q 012371 114 QWFEVLDGLLGKHWRNIGLFFNCTFLLFGSVIQLIACASNIYYINDNL-DKRTWTYIFGACCATTVF--IPSFHNYR-IW 189 (465)
Q Consensus 114 ~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~-~~~~~~ii~~~v~~pl~~--l~~l~~l~-~~ 189 (465)
+|...+.+...|..+..+.+..++....++-..++..+..+++|+++. +...|..++.+++..+-. .|.+.+.. |+
T Consensus 110 sF~~ya~rfvdpa~GFa~gWnYw~~w~v~~~~El~aa~~vi~yW~p~~v~~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~ 189 (541)
T COG0833 110 SFSTYATRFVDPAFGFALGWNYWLNWAVTLPLELTAASLVIQYWFPDTVPPWIWIAIFLVLIFLLNLFGVKGFGETEFWF 189 (541)
T ss_pred chhhhhhhhcCchHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhcCCCCChHHHHHHHHHHHHHHHHhcccccceehHHH
Confidence 788999998899999988888888888787888888888899997554 777888877766655543 34433322 33
Q ss_pred HHHHHHHHH-HHHHHHH-HhhhhcccCC-Ccc-----CCCCchhhHhHhHHHHHHHHhcCccchHhHhhhccCCcc-chH
Q 012371 190 SFLGLIMTS-FTAWYLT-IASLVHGQVE-GVK-----HSGPTKMVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKS 260 (465)
Q Consensus 190 s~~~~~~~~-~~~~~~~-~~~~~~g~~~-~~~-----~~~~~~~~~~~~a~~~~~faf~~~~~v~~i~~~mk~p~~-~~~ 260 (465)
|.+=+++++ +..+.++ ......++.+ +.+ ...+..+.++...+-+..|+|.|...+---..|-++|+| .+|
T Consensus 190 s~iKV~~ii~Fii~gii~~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~K~iPk 269 (541)
T COG0833 190 SSIKVLTIIGFIILGIIIICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENPRKSIPK 269 (541)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCCchhhhHH
Confidence 333333222 1111111 1111111110 111 123455788888888999999999999999999999977 577
Q ss_pred HHHHHHHHHHHHHHhH-HHHHHHhhcccc---------ccccccccccCc---ccHHHHHHHHHHHHHHHHHHhhhccHH
Q 012371 261 IYLLATLYVLTLTLPS-ASAVYWAFGDML---------LTHSNAFSLLPR---TGFRDTAVILMLIHQFITFGFACTPLY 327 (465)
Q Consensus 261 ~~~~s~~~~~~~y~~~-g~~gy~~fG~~~---------~~~~~il~~l~~---~~~~~~~~~~~~i~~~~s~pl~~~p~~ 327 (465)
+..-.+-=+.++|+.. -+.|.+.=.++. ..+++....+++ ..+..+.|...+++++.+-==.++..-
T Consensus 270 Aik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~svlSa~NS~lYasS 349 (541)
T COG0833 270 AIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNAGIPVAASIMNAVILTSVLSAANSGLYASS 349 (541)
T ss_pred HHHHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHhcCCccchHHHHHHHHHHHHHHhhccchHHH
Confidence 6655444455555331 122222211210 001222222222 124466777777776666422333333
Q ss_pred HHHHHHhc---------CCCCcchhhHHH-hhhhHHHHHHHHHHhcCC---chhhHHhhhhhhhhhhHHhhhhHHHHHHh
Q 012371 328 FVWEKFIG---------VHNTKSTFKRAL-ARLPVVIPIWFLAIIFPF---FGPINSTVGSLLVSFTVYIIPALAHMITF 394 (465)
Q Consensus 328 ~~~~~~~~---------~~~~~~~~~~~~-~r~~~~~~~~~~A~~vp~---~~~i~~lvGs~~~~~l~~ilP~l~~l~~~ 394 (465)
.++-.+-+ +-+|+..+.+-+ +..++.+++++.+.. +. ++-++++.|-.. .++.+-=++.|++.|
T Consensus 350 R~L~sLA~~g~APk~f~~~~r~GvP~~al~vt~~fg~lafl~~~~-~~~~vf~wL~~isg~s~--~i~W~~I~~shirFR 426 (541)
T COG0833 350 RMLYSLAKQGKAPKIFAKVDRRGVPLVALLVTLLFGLLAFLNSSF-KETTVFNWLLNISGLSG--FIAWGSICLSHIRFR 426 (541)
T ss_pred HHHHHHHhcCCCchHHHhhCCCCCchHHHHHHHHHHHHHHHHhcc-CcchHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 33333221 122333334333 333344444444433 32 455566655443 556666677788777
Q ss_pred cch
Q 012371 395 APA 397 (465)
Q Consensus 395 ~~~ 397 (465)
|.-
T Consensus 427 ~A~ 429 (541)
T COG0833 427 RAM 429 (541)
T ss_pred HHH
Confidence 643
No 43
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.24 E-value=1.2e-09 Score=109.80 Aligned_cols=344 Identities=10% Similarity=0.043 Sum_probs=205.9
Q ss_pred ccccCCchhHHHHHHHhhhhhhhhchhHHHHHh-hc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccc
Q 012371 34 FFWHGGSVYDAWFSCASNQVAQVLLTLPYSFSQ-LG-LLSGILLQLFYGLMGSWTAYLISILYVEYRTRKEREKVDFRNH 111 (465)
Q Consensus 34 ~~~~~~s~~~a~~~l~~~~iG~GiL~lP~a~~~-~G-~~~g~i~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~~~~~~~ 111 (465)
+.+|+.+.+.+...++++++|+|+...|....+ +| ....++..+++++++......- .|+...-|.+|-
T Consensus 9 ~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcy----aELGT~ipksGg----- 79 (479)
T KOG1287|consen 9 QLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCY----AELGTSIPKSGG----- 79 (479)
T ss_pred cccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHH----HHHhccccCCCc-----
Confidence 456677888899999999999999999988655 54 4446666678888888777655 455555554553
Q ss_pred cccHHHHHHHhhchhhHHHHHHHHHHHHHHHH-HHHHHHhHhh-hhhhhccC-CchhhhHhHHHHHhhhhccCCCcchhH
Q 012371 112 VIQWFEVLDGLLGKHWRNIGLFFNCTFLLFGS-VIQLIACASN-IYYINDNL-DKRTWTYIFGACCATTVFIPSFHNYRI 188 (465)
Q Consensus 112 ~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~-~~y~i~~~~~-l~~~~~~~-~~~~~~ii~~~v~~pl~~l~~l~~l~~ 188 (465)
+|.-+ .++||+.......+.-.+...... ..+.+..++. ++...+.. .++.+.-..+.+++.+....|..+.++
T Consensus 80 --d~ayi-~~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp~c~~p~~~~~lla~~~l~~lt~~n~~~V~~ 156 (479)
T KOG1287|consen 80 --DYAYI-SEAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFPLCDVPRVASKLLAAALLVLLTLINSFSVKW 156 (479)
T ss_pred --chhhH-HHHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 33333 556898887766655444444433 5566666665 55554422 233344344444444444557778887
Q ss_pred HHHHHHHHHHH---HHHHHHHhhhh---cccCCCccC----CCCchhhHhHhHHHHHHHHhcCccchHhHhhhccCCcc-
Q 012371 189 WSFLGLIMTSF---TAWYLTIASLV---HGQVEGVKH----SGPTKMVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK- 257 (465)
Q Consensus 189 ~s~~~~~~~~~---~~~~~~~~~~~---~g~~~~~~~----~~~~~~~~~~~a~~~~~faf~~~~~v~~i~~~mk~p~~- 257 (465)
.+.+-.+.+.. ....+++..++ .|..++.+. ....+..+...++-.-.|||.|=..+=.+..|+|||+|
T Consensus 157 a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g~~~~~g~i~lafysglfa~~GWd~lN~vteEiknP~kt 236 (479)
T KOG1287|consen 157 ATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFEGSDTDVGNIALAFYSGLFAFSGWDYLNYVTEEIKNPRRT 236 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchheeEecccccccccccccCcCchHHHHHHHHHhhhcccCchhhccchHhhcCcccc
Confidence 77766665531 22222222222 233222211 12234455667777899999999999999999999966
Q ss_pred chHHHHHHHHHHHHHHHhHHHHHHHhhcccccccccccccc------Cc---ccHHHHHHHHHHHHHHHHHHhhhccHHH
Q 012371 258 FKSIYLLATLYVLTLTLPSASAVYWAFGDMLLTHSNAFSLL------PR---TGFRDTAVILMLIHQFITFGFACTPLYF 328 (465)
Q Consensus 258 ~~~~~~~s~~~~~~~y~~~g~~gy~~fG~~~~~~~~il~~l------~~---~~~~~~~~~~~~i~~~~s~pl~~~p~~~ 328 (465)
.+++...++.++++.|+++=+..+.+--. +.++.+- .+ +.+..++-++..++.+.+.--.++..-.
T Consensus 237 LP~Ai~isi~lvt~iYil~NvAy~~vls~-----~e~l~S~aVav~Fa~~~~G~~~~~ip~~ValS~~G~~n~~ifs~SR 311 (479)
T KOG1287|consen 237 LPRAILISIPLVTVIYVLVNVAYFTVLSP-----DEILSSDAVAVTFADRILGVFAWAIPFSVALSLIGSLNSVIFSSSR 311 (479)
T ss_pred chHHHHHhhHHHHHHHHHhHhheeEecCH-----HHhcccchHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 79999999999999998876554443321 1222221 11 2233455555556666555444433322
Q ss_pred HHHHHhc----------CCCCcchhhHHHhhhhHHHHHHHHHHhcCCchhhHHhhhhhhhhhhHHhhhhHHHHHHhcch
Q 012371 329 VWEKFIG----------VHNTKSTFKRALARLPVVIPIWFLAIIFPFFGPINSTVGSLLVSFTVYIIPALAHMITFAPA 397 (465)
Q Consensus 329 ~~~~~~~----------~~~~~~~~~~~~~r~~~~~~~~~~A~~vp~~~~i~~lvGs~~~~~l~~ilP~l~~l~~~~~~ 397 (465)
.+...-+ .+.++... ....+......++..++.+++.+++.++=.-.....+.+-+++++|.++++
T Consensus 312 ~~~~~areG~LP~~~s~i~~~~~TP---~~allf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~ 387 (479)
T KOG1287|consen 312 LFYAGAREGHLPAFFSMISVRRFTP---RPALLFSGLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPP 387 (479)
T ss_pred HHHHHHHccCccHHHHhhcCCCCCC---hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 2222111 11111111 112233334444555666899999998877777777778888888777665
No 44
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=99.23 E-value=4.3e-08 Score=101.21 Aligned_cols=233 Identities=12% Similarity=0.049 Sum_probs=130.0
Q ss_pred ccccCCchhHHHHHHHhhhhhhhhchhHHHH-Hhhchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccc
Q 012371 34 FFWHGGSVYDAWFSCASNQVAQVLLTLPYSF-SQLGLL-SGILLQLFYGLMGSWTAYLISILYVEYRTRKEREKVDFRNH 111 (465)
Q Consensus 34 ~~~~~~s~~~a~~~l~~~~iG~GiL~lP~a~-~~~G~~-~g~i~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~~~~~~~ 111 (465)
+.+++.+.+++....++.++|+|++..|... .+.|-. ..+...++.+++........ .|...+.|++|-.
T Consensus 5 ~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~----aEl~s~~P~~GG~---- 76 (445)
T PRK11357 5 ELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVY----AELSTAYPENGAD---- 76 (445)
T ss_pred cccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHH----HHHHhhcCCCCCc----
Confidence 3455778899999999999999999999764 445632 23444455555555444444 5666666665531
Q ss_pred cccHHHHHHHhhchhhHHHHHHHHHH-HHHHHHHHHHHHhHhhhhhhhccCCchhhhHhHHHHHhhhh--ccCCCcchhH
Q 012371 112 VIQWFEVLDGLLGKHWRNIGLFFNCT-FLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTV--FIPSFHNYRI 188 (465)
Q Consensus 112 ~~~y~~l~~~~~G~~~~~~~~~~~~~-~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~ii~~~v~~pl~--~l~~l~~l~~ 188 (465)
....++.+||...++..+..+. ........+....++.+..+.+ .+...+..+..++.+.+. ..+..+....
T Consensus 77 ----y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~-~~~~~~~~~~~~~~~~~~~ln~~gv~~~~~ 151 (445)
T PRK11357 77 ----YVYLKNAGSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLTP-IDPLLGKFIAAGLIIAFMLLHLRSVEGGAA 151 (445)
T ss_pred ----eeeHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 1234577899888877775332 2222333344444444443322 121111122222222222 2233333333
Q ss_pred HHHHHHHHHHHHHHHHHHhhh--hcccCC--CccC--CCCchhhHhHhHHHHHHHHhcCccchHhHhhhccCCcc-chHH
Q 012371 189 WSFLGLIMTSFTAWYLTIASL--VHGQVE--GVKH--SGPTKMVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKSI 261 (465)
Q Consensus 189 ~s~~~~~~~~~~~~~~~~~~~--~~g~~~--~~~~--~~~~~~~~~~~a~~~~~faf~~~~~v~~i~~~mk~p~~-~~~~ 261 (465)
+..+..+..+...+.+++..+ .++... ..+. ....++..++.++....|+|.|-.....+.+|+|||+| .+|+
T Consensus 152 v~~~~~~~~~~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iP~A 231 (445)
T PRK11357 152 FQTLITIAKIIPFTIVIGLGIFWFKAENFAAPTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGEIKNPGKTMPRA 231 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCcccccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHhcCccccchHH
Confidence 333333222221111111111 122111 0000 11112456778888999999999999999999999975 6999
Q ss_pred HHHHHHHHHHHHHhHHHH
Q 012371 262 YLLATLYVLTLTLPSASA 279 (465)
Q Consensus 262 ~~~s~~~~~~~y~~~g~~ 279 (465)
...++..+.++|++....
T Consensus 232 i~~~~~i~~~~Y~l~~~~ 249 (445)
T PRK11357 232 LIGSCLLVLVLYTLLALV 249 (445)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999776543
No 45
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=99.21 E-value=1.3e-07 Score=99.02 Aligned_cols=228 Identities=11% Similarity=0.101 Sum_probs=118.7
Q ss_pred ccCCchhHHHHHHHhhhhhhhhchhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-ccccccccccc
Q 012371 36 WHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGLLSGILLQLFYGLMGSWTAYLISILYVEYRTRKER-EKVDFRNHVIQ 114 (465)
Q Consensus 36 ~~~~s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~ll~~~~~~~~~~~~~-~~~~~~~~~~~ 114 (465)
+++.+.++..+..+++++|.+ .+|.++++.|.. +++..++.+++...+ ..-+..|..++.|+ +| .
T Consensus 6 ~~~l~~~~l~~~~~~~vig~~--~~~~~~~~~G~~-~i~~~~i~~~~~~l~---~al~~aEL~s~~P~~aG--------G 71 (496)
T PRK15238 6 KKKLSLIGLILMIFTSVFGFA--NSPRAFYLMGYS-AIPWYILSAILFFIP---FALMMAEYGSAFKDEKG--------G 71 (496)
T ss_pred cCeeeHHHHHHHHHHHHHhCC--chHHHHHHcChH-HHHHHHHHHHHHHHH---HHHHHHHHHhcCCCCCC--------c
Confidence 467889999999999999976 568888888864 344444444433222 22233566666653 34 4
Q ss_pred HHHHHHHhhchhhHHHHHHHHHHHHHHHH---HH-------HHHHhHhhh-hhhh-ccCCchhhhHhHHH-HHhh--hhc
Q 012371 115 WFEVLDGLLGKHWRNIGLFFNCTFLLFGS---VI-------QLIACASNI-YYIN-DNLDKRTWTYIFGA-CCAT--TVF 179 (465)
Q Consensus 115 y~~l~~~~~G~~~~~~~~~~~~~~~~g~~---~~-------y~i~~~~~l-~~~~-~~~~~~~~~ii~~~-v~~p--l~~ 179 (465)
-..-.++++||+.+++..+.......... .+ +.+. +... +.+. ...+......+.++ .++. ...
T Consensus 72 ~Y~w~~~~~G~~~gf~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~t~vn 150 (496)
T PRK15238 72 IYSWMNKSVGPKFAFIGTFMWFASYIIWMVSTASKIWIPFSTFIF-GKDTTQTWHFLGLNSTQVVGILAVIWMILVTFVA 150 (496)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcchhhhhhhhcccchHHHHHHHHHHHHHHHHHH
Confidence 44566778899988765543222211111 11 1111 1111 1000 01111111112222 2112 223
Q ss_pred cCCCcchhHHHHHHHHHHHHH-HHHHH---HhhhhcccCC--Ccc-----C---CCCchhhHhHhHHHHHHHHhcCccch
Q 012371 180 IPSFHNYRIWSFLGLIMTSFT-AWYLT---IASLVHGQVE--GVK-----H---SGPTKMVLYFTGATNILYTFGGHAVT 245 (465)
Q Consensus 180 l~~l~~l~~~s~~~~~~~~~~-~~~~~---~~~~~~g~~~--~~~-----~---~~~~~~~~~~~a~~~~~faf~~~~~v 245 (465)
.|..+..+.++-++....+.. .+.++ +.....+... +.. . +...+..+++.++....|+|.|...+
T Consensus 151 ~~g~~~~~~i~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~ 230 (496)
T PRK15238 151 SKGINKIAKVTSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSFVVFAIFAYGGIEAV 230 (496)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccccchHHHHHHHHHHHHHHhHHHH
Confidence 444555555544333222111 00111 1111122111 100 0 00111134667777889999999999
Q ss_pred HhHhhhccCCcc-chHHHHHHHHHHHHHHHhHHH
Q 012371 246 VEIMHAMWKPQK-FKSIYLLATLYVLTLTLPSAS 278 (465)
Q Consensus 246 ~~i~~~mk~p~~-~~~~~~~s~~~~~~~y~~~g~ 278 (465)
....+|+|||+| .+|+...+...+.++|++..+
T Consensus 231 ~~~a~E~~~p~~~~p~ai~~~~~~~~~~y~l~~~ 264 (496)
T PRK15238 231 GGLVDKTENPEKNFPKGIIIAAIVISIGYSLAIF 264 (496)
T ss_pred HHHHHhccCCCccccHHHHHHHHHHHHHHHHHHH
Confidence 999999999965 799999998888888877533
No 46
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=99.21 E-value=3.7e-08 Score=102.20 Aligned_cols=347 Identities=15% Similarity=0.107 Sum_probs=183.9
Q ss_pred ccccCCchhH-HHHHHHhhhhhhhhchhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccc
Q 012371 34 FFWHGGSVYD-AWFSCASNQVAQVLLTLPYSFSQLGLLSGILLQLFYGLMGSWTAYLISILYVEYRTRKEREKVDFRNHV 112 (465)
Q Consensus 34 ~~~~~~s~~~-a~~~l~~~~iG~GiL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~~~~~~~~ 112 (465)
..+++.+.++ ...-...+++|.|++.+|......+ ....+..++.+++........ .|..++.|+.|
T Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~-~~~~~~~li~~~~~~~~a~~~----~el~~~~p~~G------- 76 (466)
T COG0531 9 ELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLA-PAAILAWLIAGIIILFLALSY----AELSSAIPSAG------- 76 (466)
T ss_pred hcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhc-hHHHHHHHHHHHHHHHHHHHH----HHHHhcCCCCC-------
Confidence 4445666676 7778888899999999998887765 222222344444444443433 44455555444
Q ss_pred ccHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhcc---CCch-hhhHhHH-HHHhhhhc--cCCCcc
Q 012371 113 IQWFEVLDGLLGKHWRNIGLFFNCTFLLFGSVIQLIACASNIYYINDN---LDKR-TWTYIFG-ACCATTVF--IPSFHN 185 (465)
Q Consensus 113 ~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~---~~~~-~~~ii~~-~v~~pl~~--l~~l~~ 185 (465)
.+.+..++.+||+..+.+.+...+.......+.....+..+..+.+. .... +...... +.++.+.. .+..+.
T Consensus 77 -G~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~G~~~ 155 (466)
T COG0531 77 -GAYAYAKRALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPGLLSIGPLLIILIALALIALLTLLNLRGIKA 155 (466)
T ss_pred -CeeeehhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhcCCchHHHHHHHHHHHHHHHHHHhhHHH
Confidence 55667788999988888888777766666666666666555544332 1111 2222222 22222222 223333
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhcccCC---CccCC--CCchhhHhHhHHHHHHHHhcCccchHhHhhhccCCc-cch
Q 012371 186 YRIWSFLGLIMTSFTAWYLTIASLVHGQVE---GVKHS--GPTKMVLYFTGATNILYTFGGHAVTVEIMHAMWKPQ-KFK 259 (465)
Q Consensus 186 l~~~s~~~~~~~~~~~~~~~~~~~~~g~~~---~~~~~--~~~~~~~~~~a~~~~~faf~~~~~v~~i~~~mk~p~-~~~ 259 (465)
.........+..+...+.+.+..+.+.... ..... .......+..++....++|.|-.......+|+|||+ +.+
T Consensus 156 ~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r~ip 235 (466)
T COG0531 156 SAKINSIITILKIIILLIFIILGLFAFGFSNGNLFAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPKRTIP 235 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHhcCcccccc
Confidence 333333333222222222222222222111 11110 123344678888899999999999999999999995 569
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhhccc-ccccc----ccc---cccCcccHHHHHHHHHHHHHHHHHHhhh-ccHHHHH
Q 012371 260 SIYLLATLYVLTLTLPSASAVYWAFGDM-LLTHS----NAF---SLLPRTGFRDTAVILMLIHQFITFGFAC-TPLYFVW 330 (465)
Q Consensus 260 ~~~~~s~~~~~~~y~~~g~~gy~~fG~~-~~~~~----~il---~~l~~~~~~~~~~~~~~i~~~~s~pl~~-~p~~~~~ 330 (465)
|+...++..+.++|+...+.-....+++ .. .+ +.. ......+...+..+...++...+..... -+.|...
T Consensus 236 ~aii~~~~~~~~~y~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~~~ 314 (466)
T COG0531 236 RAIILSLLIVLILYILGALVIVGVLPAGDLA-ASAPSAPLALAALFGGGNWGAIIIAILALLSLFGSLLAWILAVSRVLY 314 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccHHHHh-ccCCCccHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888888988777666666542 21 11 000 0011123334445555555555543333 2233221
Q ss_pred HH--------Hhc-CCCCcchhhHHHhhhhHHHHHHHHHHhcC----CchhhHHhhhhhhhhhhHHhhhhHHHHHHhcch
Q 012371 331 EK--------FIG-VHNTKSTFKRALARLPVVIPIWFLAIIFP----FFGPINSTVGSLLVSFTVYIIPALAHMITFAPA 397 (465)
Q Consensus 331 ~~--------~~~-~~~~~~~~~~~~~r~~~~~~~~~~A~~vp----~~~~i~~lvGs~~~~~l~~ilP~l~~l~~~~~~ 397 (465)
.. .+. .+++.+.+.+-..-..++.. .+....+ .++.+.++ +.....+.|.++.+..++.++++
T Consensus 315 ~~ardg~lP~~~~~~~~~~~~P~~a~~~~~ii~~--~l~~~~~~~~~~~~~l~~~--~~~~~~~~y~~~~~~~~~~~~~~ 390 (466)
T COG0531 315 AMARDGLLPKFFAKVNPKGRTPVIALILTGIISL--ILLLLFPLSSIAFNALVSL--ASVAFLIAYLLVALALLVLRRKK 390 (466)
T ss_pred HHHhCCCccHHHHHhCCCCCCCHHHHHHHHHHHH--HHHHHhhccccHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhcC
Confidence 11 111 11121122222222222222 1222222 23444444 34456889999999998888774
Q ss_pred h
Q 012371 398 A 398 (465)
Q Consensus 398 ~ 398 (465)
+
T Consensus 391 ~ 391 (466)
T COG0531 391 P 391 (466)
T ss_pred C
Confidence 3
No 47
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=99.19 E-value=3.5e-07 Score=95.27 Aligned_cols=233 Identities=10% Similarity=0.008 Sum_probs=120.1
Q ss_pred cccccCCchhHHHHHHHhhh-hhhhhchhH-HHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccc
Q 012371 33 SFFWHGGSVYDAWFSCASNQ-VAQVLLTLP-YSFSQLGLLSGILLQLFYGLMGSWTAYLISILYVEYRTRKEREKVDFRN 110 (465)
Q Consensus 33 ~~~~~~~s~~~a~~~l~~~~-iG~GiL~lP-~a~~~~G~~~g~i~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~~~~~~ 110 (465)
++.+++-|.++.+..-++.+ +|.|+.+.| .+..++|- ..+...++.++.... ...++.|..++.|.+|
T Consensus 9 ~~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp-~~~~~~li~~i~~l~----~als~aEL~s~~P~aG----- 78 (475)
T TIGR03428 9 PQLHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGP-AFFWTWPVVFVGQLL----VALNFAELAARYPISG----- 78 (475)
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHH----HHHHHHHHHhhCCCCC-----
Confidence 34455667777776666654 888988866 55666775 223334444444333 3344567777777655
Q ss_pred ccccHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh-------h--ccCC--chhh--hHhHHHHHhhh
Q 012371 111 HVIQWFEVLDGLLGKHWRNIGLFFNCTFLLFGSVIQLIACASNIYYI-------N--DNLD--KRTW--TYIFGACCATT 177 (465)
Q Consensus 111 ~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~-------~--~~~~--~~~~--~ii~~~v~~pl 177 (465)
......++.+||...+++.+...+................+..+ . ++.. ...| .++..++.+..
T Consensus 79 ---G~Y~~~~~~~g~~~gf~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (475)
T TIGR03428 79 ---AIYQWSRRMGGEVIGWFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQIIGEDPTLTSPSGAANAVLLGSVLLVLT 155 (475)
T ss_pred ---CHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCccccCCCchHHHHHHHHHHHHHH
Confidence 44556677889998888887766544333322222222222111 0 1111 1111 11111111122
Q ss_pred --hccCCCcchhHHHHHHHHHHHHHHHHHHHhhhhcccC-CC--ccC----CCCchhhHhHhHHHHHHHHhcCccchHhH
Q 012371 178 --VFIPSFHNYRIWSFLGLIMTSFTAWYLTIASLVHGQV-EG--VKH----SGPTKMVLYFTGATNILYTFGGHAVTVEI 248 (465)
Q Consensus 178 --~~l~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~g~~-~~--~~~----~~~~~~~~~~~a~~~~~faf~~~~~v~~i 248 (465)
...+..|..+++..+..+..+...+.+++....+.+. +. .+. ..+.....+..+.....|+|.|-.....+
T Consensus 156 ~~in~~g~k~~~~i~~~~~~~~i~~l~~iii~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~ 235 (475)
T TIGR03428 156 TVINCIGVEWMSRVNTIGVTCEIVGVLAVIGVLFTHAQRGPGVVFDTSVTGASPGYYGAFLVSGLMAAYVMVGFGSAGEL 235 (475)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeecCCCCCCccHHHHHHHHHHHHHHHhcCcchHHHH
Confidence 2223344444444433332222111111122212111 11 111 11111234555666678999999999999
Q ss_pred hhhccCCcc-chHHHHHHHHHHHHHHHhHHH
Q 012371 249 MHAMWKPQK-FKSIYLLATLYVLTLTLPSAS 278 (465)
Q Consensus 249 ~~~mk~p~~-~~~~~~~s~~~~~~~y~~~g~ 278 (465)
-+|+|||+| .+|+...++.+..++|.+.-+
T Consensus 236 aeE~knP~r~iPrai~~s~~i~~~~~~~~~~ 266 (475)
T TIGR03428 236 SEETKNPRRVAPRTILTALSVSALGGGLMIL 266 (475)
T ss_pred HHHhcCcchhhhHHHHHHHHHHHHHHHHHHH
Confidence 999999976 699988888877665544333
No 48
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=99.11 E-value=4.1e-07 Score=94.71 Aligned_cols=171 Identities=11% Similarity=0.097 Sum_probs=89.7
Q ss_pred HHHHHhcCccchHhHhhhccCCcc-chHHHHHHHHHHHHHHHhHHHHHHHhhccccccc-ccc-------ccccCcccHH
Q 012371 234 NILYTFGGHAVTVEIMHAMWKPQK-FKSIYLLATLYVLTLTLPSASAVYWAFGDMLLTH-SNA-------FSLLPRTGFR 304 (465)
Q Consensus 234 ~~~faf~~~~~v~~i~~~mk~p~~-~~~~~~~s~~~~~~~y~~~g~~gy~~fG~~~~~~-~~i-------l~~l~~~~~~ 304 (465)
.+.|+|.|-+.....-+|+|||+| .+|+...+...+.++|++..+.-....+++.... .+. ......++..
T Consensus 202 ~~~~af~G~e~~~~~a~E~knP~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 281 (474)
T TIGR03813 202 SIFLFYAGMEMNAVHVKDVDNPDKNYPIAILIAALGTVLIFVLGTLAIAFIIPREDISLTQSLLVAFDNAFHWAGLSWLG 281 (474)
T ss_pred HHHHHHhchhHhHHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhccCHhhccccccHHHHHHHHHHHcCchHHH
Confidence 467899999999999999999965 7999999999999999775544433333332100 010 1111112233
Q ss_pred HHHHHHHHHHHHHHHHhhh-ccHHHHHH--------HHhcCCCCcchhhHHHhhhh-HHHHHHHHHHhcCCchhhHHhhh
Q 012371 305 DTAVILMLIHQFITFGFAC-TPLYFVWE--------KFIGVHNTKSTFKRALARLP-VVIPIWFLAIIFPFFGPINSTVG 374 (465)
Q Consensus 305 ~~~~~~~~i~~~~s~pl~~-~p~~~~~~--------~~~~~~~~~~~~~~~~~r~~-~~~~~~~~A~~vp~~~~i~~lvG 374 (465)
.+..+...++.+.+.--.+ -+.|.... +.+++.++++.+.+-+.-.. +..+..++....|+.++.++.+.
T Consensus 282 ~i~~~~~~~~~l~~~~~~~~~~sR~~~a~ardg~lP~~~~kv~k~~~P~~a~~~~~~~~~~l~~~~~~~~s~~~~f~~l~ 361 (474)
T TIGR03813 282 PILAFALAIGVLAGVVTWVAGPSSGMLAVAKAGYLPTFFQKTNKNGMPIHIMFVQGIAVSVLSVLFVVMPSVQAAFQILS 361 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 3334444444444433222 33333221 12222122223333222222 22222333344677666666555
Q ss_pred hhh--hhhhHHhhhhHHHHHHhcchhhhhccc
Q 012371 375 SLL--VSFTVYIIPALAHMITFAPAAARENAV 404 (465)
Q Consensus 375 s~~--~~~l~~ilP~l~~l~~~~~~~~~~~~~ 404 (465)
+.+ ...+.|+++.+..++.|++++.+++++
T Consensus 362 ~~~~~~~~i~y~~~~~a~i~lr~~~~~~~rpf 393 (474)
T TIGR03813 362 QLTVILYLVMYLLMFASAIYLRYSQPDRPRPY 393 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCe
Confidence 443 345678888888888776554333333
No 49
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=99.06 E-value=3e-07 Score=96.29 Aligned_cols=225 Identities=14% Similarity=0.153 Sum_probs=108.5
Q ss_pred cCCchhHHHHHHHhhhhhhhhchhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hcccccccccccH
Q 012371 37 HGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGLLSGILLQLFYGLMGSWTAYLISILYVEYRTRKE-REKVDFRNHVIQW 115 (465)
Q Consensus 37 ~~~s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~ll~~~~~~~~~~~~-~~~~~~~~~~~~y 115 (465)
+|.+.++.++..+.... ++-.+| .+++.|+ +.+...+++.+.+.-...+ +..|+....+ .+| ..
T Consensus 4 ~~l~~~~~~~~~~~~v~--~~~~~~-~~a~~G~--~~i~~~i~~~l~~~lp~al--~~AELas~~p~~~G--------G~ 68 (507)
T TIGR00910 4 KKLSLFGFFAITASMVL--AVYEYP-TFATSGF--HLVFFLLLGGILWFIPVAL--CAAEMATVDGWEEG--------GI 68 (507)
T ss_pred cEeeHHHHHHHHHHHHH--HHHhhH-HHHHhhH--HHHHHHHHHHHHHHHHHHH--HHHHHHcccCCCCC--------Ce
Confidence 45667766665555554 556788 5778884 4444455555443322222 3356655432 233 44
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh--hccCCc-hhhhHhHHHHHhhhhccCCCcchhHHHHH
Q 012371 116 FEVLDGLLGKHWRNIGLFFNCTFLLFGSVIQLIACASNIYYI--NDNLDK-RTWTYIFGACCATTVFIPSFHNYRIWSFL 192 (465)
Q Consensus 116 ~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~--~~~~~~-~~~~ii~~~v~~pl~~l~~l~~l~~~s~~ 192 (465)
..-+++++|++++++..+..++................+.+. .+..+. ..+..+..++++-+....+++..+..+.+
T Consensus 69 y~wv~~a~G~~~Gf~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~i~~l~i~~~~t~~n~~G~k~~~~i 148 (507)
T TIGR00910 69 FAWVSNTLGERFGFAAIFFGWFQIAIGFIPMIYFILGALSYILKFPALNEDPIIKFIAALIIFWALAFSQFGGTKRTAKI 148 (507)
T ss_pred eeehhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhccCcHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 456688999998887655544433321111111111111111 112222 22222222211112222233344333333
Q ss_pred HHHH---H-HHHHHHHH---HhhhhcccCCCccCC---CCchh--hHhHhHHHHHHHHhcCccchHhHhhhccCCcc-ch
Q 012371 193 GLIM---T-SFTAWYLT---IASLVHGQVEGVKHS---GPTKM--VLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FK 259 (465)
Q Consensus 193 ~~~~---~-~~~~~~~~---~~~~~~g~~~~~~~~---~~~~~--~~~~~a~~~~~faf~~~~~v~~i~~~mk~p~~-~~ 259 (465)
..++ . +...++++ +.....|.+...+.+ ...++ .+....+..+.|+|.|-......-+|+|||+| ++
T Consensus 149 ~~i~~~~~~~i~~~ili~l~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~faf~G~E~~a~~a~E~knP~r~~P 228 (507)
T TIGR00910 149 AKAGFFAGILIPAFILFALAAAYFHGGAPIAIEIDSHAFFPDFSKVGTLVVFVAFIGAYMGVEASASHINELENPGRDYP 228 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCcHHhcCCCcccccHHHHHHHHHHHHhcHHHHHHHHHHccCCccccc
Confidence 2221 1 11111111 111223332211110 00111 12333444568999999999999999999965 89
Q ss_pred HHHHHHHHHHHHHHHhH
Q 012371 260 SIYLLATLYVLTLTLPS 276 (465)
Q Consensus 260 ~~~~~s~~~~~~~y~~~ 276 (465)
|+...+...+.++|.+.
T Consensus 229 rAi~~~~i~~~~l~~l~ 245 (507)
T TIGR00910 229 LAMILLMIAAICLDAIG 245 (507)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99988888777777653
No 50
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=98.99 E-value=7.3e-08 Score=100.39 Aligned_cols=350 Identities=13% Similarity=0.039 Sum_probs=199.4
Q ss_pred ccccCCchhHHHHHHHhhhhhhhh-chhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-ccccccc
Q 012371 34 FFWHGGSVYDAWFSCASNQVAQVL-LTLPYSFSQLGLLSGILLQLFYGLMGSWTAYLISILYVEYRTRKERE-KVDFRNH 111 (465)
Q Consensus 34 ~~~~~~s~~~a~~~l~~~~iG~Gi-L~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~-~~~~~~~ 111 (465)
+.+++.+.++..+.-+.+++|+|+ .....+.++.|-..-++..++.+...+.+.. |+.|+..+.|+. |
T Consensus 27 ~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~----~~~E~~~~~P~~aG------ 96 (554)
T KOG1286|consen 27 ELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSAL----CLGEFAVRFPVSAG------ 96 (554)
T ss_pred hhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHH----HHHHHheecccccc------
Confidence 444455666666777899999999 4577888888866555555666655555544 446777777653 3
Q ss_pred cccHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhh---------ccCCchhhhHhHHH--HHhhhhcc
Q 012371 112 VIQWFEVLDGLLGKHWRNIGLFFNCTFLLFGSVIQLIACASNIYYIN---------DNLDKRTWTYIFGA--CCATTVFI 180 (465)
Q Consensus 112 ~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~---------~~~~~~~~~ii~~~--v~~pl~~l 180 (465)
++...+++..|+.+..++.+-.++.....+-+.....+..+++|. +..+...|..++.+ +++.+.-.
T Consensus 97 --s~~~ya~~~i~e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~~~~~~~~~~~~~~~~~~~~fla~~v~in~~gv 174 (554)
T KOG1286|consen 97 --SFYTYAYRFVGESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTGASLIGILVDTVNPGGWIPDFLAFILIINLFGV 174 (554)
T ss_pred --cceeeeeeeeCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccccccccCCCCCccHHHHHHHHHHHHHHHH
Confidence 455566677899999999888888777777777888888888875 33344444433322 22333334
Q ss_pred CCCcchhHHHHHHHHHHHHH-HH--HHHHhhhhcccCCCc------c-C--CCCchhhHhHhHHHHHHHHhcCccchHhH
Q 012371 181 PSFHNYRIWSFLGLIMTSFT-AW--YLTIASLVHGQVEGV------K-H--SGPTKMVLYFTGATNILYTFGGHAVTVEI 248 (465)
Q Consensus 181 ~~l~~l~~~s~~~~~~~~~~-~~--~~~~~~~~~g~~~~~------~-~--~~~~~~~~~~~a~~~~~faf~~~~~v~~i 248 (465)
+-+-..+......-+.++.- .+ +++.......++.+. + + ..|..+.+++.++-+..|+|.|...+-..
T Consensus 175 ~~~ge~ef~~~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~ 254 (554)
T KOG1286|consen 175 LAYGEVEFSLAFNKILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATT 254 (554)
T ss_pred hhccceeehHHHHHHHHHHHHHHhheeeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHH
Confidence 44333333332222222111 10 111111112221111 1 1 12344778889999999999999999999
Q ss_pred hhhccCCcc-chHHHHHHHHHHHHHHHhHHHHHHHhhc-cc-ccccccccc-----ccCcccHH---HHHHHHHHHHHHH
Q 012371 249 MHAMWKPQK-FKSIYLLATLYVLTLTLPSASAVYWAFG-DM-LLTHSNAFS-----LLPRTGFR---DTAVILMLIHQFI 317 (465)
Q Consensus 249 ~~~mk~p~~-~~~~~~~s~~~~~~~y~~~g~~gy~~fG-~~-~~~~~~il~-----~l~~~~~~---~~~~~~~~i~~~~ 317 (465)
-.|-|||+| .+++...++..+.++|+...+.--+.-. ++ ..+++.... .....+.. .+++...++.++.
T Consensus 255 a~E~kNP~k~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~~~~~k~~~~ivna~iL~~~~s 334 (554)
T KOG1286|consen 255 AEEAKNPRKAIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIGNAGAKYLPHIVNAGILIGLLS 334 (554)
T ss_pred HHhccCCcccccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHhccCccccchhhhHHHHHHHHH
Confidence 999999976 6888888888888888766543322211 11 000111000 11122222 3777777777777
Q ss_pred HHHhhhccHHHHHHHHhcCCC------CcchhhHHHhhhhHHHHHHHHHHhcCC------chhhHHhhhhhhhhhhHHhh
Q 012371 318 TFGFACTPLYFVWEKFIGVHN------TKSTFKRALARLPVVIPIWFLAIIFPF------FGPINSTVGSLLVSFTVYII 385 (465)
Q Consensus 318 s~pl~~~p~~~~~~~~~~~~~------~~~~~~~~~~r~~~~~~~~~~A~~vp~------~~~i~~lvGs~~~~~l~~il 385 (465)
+---.++|.-..+-.+-+... +-++..+-...+++..+...++.+.-+ ++.++++.|-- +.+++.+
T Consensus 335 ~~n~~~y~~sR~l~amA~~G~~Pk~f~~v~~~g~P~~a~~v~~~~~~l~~~~~~~~~~~~f~~L~~~~si~--tl~~w~~ 412 (554)
T KOG1286|consen 335 SLNSSLYAGSRVLYALAKDGLAPKFFARVDRRGVPLVAVLVSGLFGALAALNFSLGAATVFNWLVNLSSIG--TLFAWTL 412 (554)
T ss_pred HHHHHhHHhHHHHHHHHhcCCcchHHhhcCCCCCchhHHHHHHHHHHHHHHHhccccchHHHHHHHHHhHH--HHHHHHH
Confidence 766666776665555432110 001112222222222222233333222 47788876544 5777777
Q ss_pred hhHHHHHHhcch
Q 012371 386 PALAHMITFAPA 397 (465)
Q Consensus 386 P~l~~l~~~~~~ 397 (465)
=++.|++.|+..
T Consensus 413 i~~~~i~~R~a~ 424 (554)
T KOG1286|consen 413 VALSHLRFRYAM 424 (554)
T ss_pred HHHHHeeeeecc
Confidence 777777776643
No 51
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=98.98 E-value=2.7e-06 Score=88.81 Aligned_cols=227 Identities=12% Similarity=0.008 Sum_probs=108.5
Q ss_pred ccccCCchhHHHHHHHhhhhh--hhhc-hhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccc
Q 012371 34 FFWHGGSVYDAWFSCASNQVA--QVLL-TLPYSFSQLGLLSGILLQLFYGLMGSWTAYLISILYVEYRTRKEREKVDFRN 110 (465)
Q Consensus 34 ~~~~~~s~~~a~~~l~~~~iG--~GiL-~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~~~~~~ 110 (465)
+.+++-+.++.+..-.. .+| .|+. +.+.+.++.|-..-+...++.+++.......+ .|...+.|++|
T Consensus 9 ~l~r~l~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~----aEl~s~~P~~G----- 78 (482)
T TIGR00907 9 ELKREFSLWSIFGFAFS-ISNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAGSICIALSL----AELSSAYPTSG----- 78 (482)
T ss_pred eeecccchhHHHHHHHH-HHHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHH----HHHHhhCCCCc-----
Confidence 34445566665554444 444 5553 35567777886544555666666666555444 56667776555
Q ss_pred ccccHHHHHHHhhc----hhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh----hcc--CCchhhh--HhHHHHHhhh-
Q 012371 111 HVIQWFEVLDGLLG----KHWRNIGLFFNCTFLLFGSVIQLIACASNIYYI----NDN--LDKRTWT--YIFGACCATT- 177 (465)
Q Consensus 111 ~~~~y~~l~~~~~G----~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~----~~~--~~~~~~~--ii~~~v~~pl- 177 (465)
+...-+++++| +...++..+...+.....+.+.....++.+... .+. .....|. .+..++...+
T Consensus 79 ---g~y~~~~~~~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 155 (482)
T TIGR00907 79 ---GQYFWSAKLAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLTTPGREYIPTRWHIFGIMIGIHLIHA 155 (482)
T ss_pred ---cHHHHHHHhcccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCchhhhhHHHHHHHHH
Confidence 44455566665 444566655555444444433333333332211 111 1111222 2222112212
Q ss_pred -hccCCCcchhHHHHHHHHHHHHHHHHHHHhhhhccc---CC-C-----cc-CC-C-CchhhHhHhHHHHHHHHhcCccc
Q 012371 178 -VFIPSFHNYRIWSFLGLIMTSFTAWYLTIASLVHGQ---VE-G-----VK-HS-G-PTKMVLYFTGATNILYTFGGHAV 244 (465)
Q Consensus 178 -~~l~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~g~---~~-~-----~~-~~-~-~~~~~~~~~a~~~~~faf~~~~~ 244 (465)
..+...|.++.......+..+...+.+.+..+..+. .+ + .. .. . ..+-..+..++....|+|.|-..
T Consensus 156 ~in~~g~k~~~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~fsf~G~e~ 235 (482)
T TIGR00907 156 LINSLPTKWLPRITSSAAYWSLLGFLTICITLLACKSPKFNDGKFVFTNFNNSTGGWKPGGFAFLLGLLNPAWSMTGYDG 235 (482)
T ss_pred HHHHhhHhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhhhheeeeCCCCCcCCCchhhhhhhhhhHHHhcCcch
Confidence 222223333333332222211111111111111111 11 0 00 00 0 01112345555567799999999
Q ss_pred hHhHhhhccCCcc-chHHHHHHHHHHHHHH
Q 012371 245 TVEIMHAMWKPQK-FKSIYLLATLYVLTLT 273 (465)
Q Consensus 245 v~~i~~~mk~p~~-~~~~~~~s~~~~~~~y 273 (465)
....-+|+|||+| .+|+...++.+..+++
T Consensus 236 ~~~~a~E~knP~r~iP~Ai~~s~~i~~~~~ 265 (482)
T TIGR00907 236 TAHMAEEIENPEVVGPRAIIGAVAIGIVTG 265 (482)
T ss_pred hhHHHHhcCChhhhcCHHHHHHHHHHHHHH
Confidence 9999999999965 6898888776655443
No 52
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=98.84 E-value=3.5e-08 Score=102.86 Aligned_cols=226 Identities=14% Similarity=0.120 Sum_probs=133.6
Q ss_pred Hhhhhhhhh-chhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccHHHHHHHhhchhh
Q 012371 49 ASNQVAQVL-LTLPYSFSQLGLLSGILLQLFYGLMGSWTAYLISILYVEYRTRKEREKVDFRNHVIQWFEVLDGLLGKHW 127 (465)
Q Consensus 49 ~~~~iG~Gi-L~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~ 127 (465)
+.+++|+|. ++.+.+..+.|....++..++.+++......-+. |..++.|.+| ++...+++.+||..
T Consensus 7 ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~----ems~~~p~~G--------g~y~y~~~~lg~~~ 74 (478)
T PF00324_consen 7 IGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLA----EMSRRFPSAG--------GFYAYASRGLGPAL 74 (478)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhh----hhhhhhcccc--------chhhhhhhccCCcC
Confidence 567888888 5577889999986666777777777777766664 4455554444 67778888899988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhh--hccCC-chhh----hHhHHHHHhhhhccCCCcchhHHHHHHHHHHHHH
Q 012371 128 RNIGLFFNCTFLLFGSVIQLIACASNIYYI--NDNLD-KRTW----TYIFGACCATTVFIPSFHNYRIWSFLGLIMTSFT 200 (465)
Q Consensus 128 ~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~--~~~~~-~~~~----~ii~~~v~~pl~~l~~l~~l~~~s~~~~~~~~~~ 200 (465)
+..+.+..++.............+..++.+ .++.. ...| ..+..+++..+... ..+.-......-.+.-+..
T Consensus 75 Gf~~gw~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~-gv~~~~~~~~~~~~i~~~~ 153 (478)
T PF00324_consen 75 GFAAGWAYWLSYIAAIAAEATAAGSFLQFWGYFPGLPSTWVWGILIAIIFILLITLLNLF-GVRVSGKIEFILTIIKLIA 153 (478)
T ss_pred CceeeHHHHHHHHHHHHhhhhhhhhhhccccccccccccccccchhhhhhhhhhhhhhhh-hhhccchHHHHHHHHhhhH
Confidence 888777765555555555555555555554 23333 3333 22333323222222 2222222111111111111
Q ss_pred HHHHHHhh-h--hcc-cCCCc-----c----CCCC--------chhhHhHhHHHHHHHHhcCccchHhHhhhccCCcc-c
Q 012371 201 AWYLTIAS-L--VHG-QVEGV-----K----HSGP--------TKMVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-F 258 (465)
Q Consensus 201 ~~~~~~~~-~--~~g-~~~~~-----~----~~~~--------~~~~~~~~a~~~~~faf~~~~~v~~i~~~mk~p~~-~ 258 (465)
.+.+++.. + ..+ ++.+. + ...+ .++.+++.++....++|.|...+...-.|.|||+| .
T Consensus 154 li~~ii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~k~I 233 (478)
T PF00324_consen 154 LIAFIIVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAKNPRKTI 233 (478)
T ss_pred hhhhhhhcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccCCCchhhh
Confidence 11111111 1 111 11111 0 0011 23678899999999999999999999999999976 6
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHhhccc
Q 012371 259 KSIYLLATLYVLTLTLPSASAVYWAFGDM 287 (465)
Q Consensus 259 ~~~~~~s~~~~~~~y~~~g~~gy~~fG~~ 287 (465)
+|+...++....++|+......-...+.+
T Consensus 234 Pra~~~~~~~~~v~y~~~~~~~~~~~~~~ 262 (478)
T PF00324_consen 234 PRATLLSVLRIGVFYVLTSYALTLAVPYD 262 (478)
T ss_pred hhHhhhhhhhhhhhhhhhhhhcccccCcc
Confidence 89998888888888887666555555544
No 53
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.82 E-value=8.4e-06 Score=84.05 Aligned_cols=268 Identities=12% Similarity=0.024 Sum_probs=137.1
Q ss_pred cHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccC-------Cc------hhhhHhHHHHHhhhhcc
Q 012371 114 QWFEVLDGLLGKHWRNIGLFFNCTFLLFGSVIQLIACASNIYYINDNL-------DK------RTWTYIFGACCATTVFI 180 (465)
Q Consensus 114 ~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~-------~~------~~~~ii~~~v~~pl~~l 180 (465)
++.-+.+..||.+|..+..++..+..+|-........++.+..+.... ++ ..+.+++.++.+++...
T Consensus 77 ~~~v~sR~~FG~~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~~~~~~t~~~~~~~~i~~~l~~~~~~~ 156 (442)
T TIGR00800 77 PFPVLSRASFGIYGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLHLGNGMTTLELICFIIFWALVLVFLFF 156 (442)
T ss_pred CcchhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccccCCcccHHHHHHHHHHHHHHHHHHHc
Confidence 677889999999999999888888888888888777777765442211 11 12233444555555554
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHhhhh-cccCC--CccC--CCCchhhHhHhHHHHHHHH-hcCccchHhHhhhccC
Q 012371 181 PSFHNYRIWSFLGLIMTSFTAWYLTIASLV-HGQVE--GVKH--SGPTKMVLYFTGATNILYT-FGGHAVTVEIMHAMWK 254 (465)
Q Consensus 181 ~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~-~g~~~--~~~~--~~~~~~~~~~~a~~~~~fa-f~~~~~v~~i~~~mk~ 254 (465)
.-.+-.+.....+....+.+..+++..... +|..+ ..+. ..+.....+..+++..+=. -..-.+.+++.+.+|+
T Consensus 157 ~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy~~~ 236 (442)
T TIGR00800 157 FGYKIRHLFEWLAVVPPFAAFGMLIWALSKAHGKGPLGELTGTLHGSTGAWAFLYALSLVIGSFATWATNAPDFTRFGKS 236 (442)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHcCchhhhhhcCC
Confidence 444444444444443332221121111111 22211 1111 1233344555555543222 2335688999999999
Q ss_pred CccchHHHHHHHHHHHHHHHhHHHHHHHh----hccccccccccccccCcccHHHHHH------HHHHHHHHH-HHHhhh
Q 012371 255 PQKFKSIYLLATLYVLTLTLPSASAVYWA----FGDMLLTHSNAFSLLPRTGFRDTAV------ILMLIHQFI-TFGFAC 323 (465)
Q Consensus 255 p~~~~~~~~~s~~~~~~~y~~~g~~gy~~----fG~~~~~~~~il~~l~~~~~~~~~~------~~~~i~~~~-s~pl~~ 323 (465)
|++-.+....++....+....+|+.+-.. +|+..-+...+...+.......... ++..+..+. .--...
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~f~~~~~vl~~~~t~~~~N~ 316 (442)
T TIGR00800 237 KKTAIWGQFLALPGGFTLTCFFGILGAAAAYAAYGEPYWSPLDILARFLGLTYAVGARAVFGFGFCFVVAQLSTNISANS 316 (442)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCHHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 88776666666766666666667777665 7765432233444443332221111 222222222 333444
Q ss_pred ccHHHHHHHHhcCCCCcchhhHHHhhhhH---HHHHHHHHHhcCCchhhHHhhhhhhhhhhHHh
Q 012371 324 TPLYFVWEKFIGVHNTKSTFKRALARLPV---VIPIWFLAIIFPFFGPINSTVGSLLVSFTVYI 384 (465)
Q Consensus 324 ~p~~~~~~~~~~~~~~~~~~~~~~~r~~~---~~~~~~~A~~vp~~~~i~~lvGs~~~~~l~~i 384 (465)
+|.-..+...+++.. +.+|...-..+ ++..+.+.-+.+.+.+++++.|...+.....+
T Consensus 317 ys~~l~l~~l~~~~~---~~~r~~~i~~ii~~~~~~~~~~~~~~~~~~FL~~lg~~~~P~~gI~ 377 (442)
T TIGR00800 317 YSAGLDIAALLPKYI---KIKRGSLICAIIALLICPWNLYNSSSKFTTFLSSIGGFLSPIAGVM 377 (442)
T ss_pred cchHHHHHHhCcCcc---ccchHHHHHHHHHHHhccHHHHhchHHHHHHHHHHHHHHHHHHHHH
Confidence 565555555553211 22332211111 11112222223345668888877776655544
No 54
>PRK11375 allantoin permease; Provisional
Probab=98.80 E-value=3.1e-06 Score=87.91 Aligned_cols=267 Identities=10% Similarity=-0.014 Sum_probs=127.0
Q ss_pred cHHHHHHHhhchhhHHHHHHHHH-HHHHHHHHHHHHHhHhhhhhh----hcc---C---------Cc--hhhhHhHHHHH
Q 012371 114 QWFEVLDGLLGKHWRNIGLFFNC-TFLLFGSVIQLIACASNIYYI----NDN---L---------DK--RTWTYIFGACC 174 (465)
Q Consensus 114 ~y~~l~~~~~G~~~~~~~~~~~~-~~~~g~~~~y~i~~~~~l~~~----~~~---~---------~~--~~~~ii~~~v~ 174 (465)
++.-+.+..||.+|..+..+... +..++-........++.+..+ .+. . +. ..+.+++.++.
T Consensus 90 ~~~v~sR~sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~~~~g~~~~~~i~~~i~~~l~ 169 (484)
T PRK11375 90 PFAMILRASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDFTLLGLSLPGLITFLIFWLVN 169 (484)
T ss_pred ChhHhHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcHHHHHHHHHHHHHH
Confidence 78889999999999777666553 344444444444455554322 111 0 11 11223444555
Q ss_pred hhhhccCCCcchhHHHHHHHHHHHHHHHHHHHhhhhcccCCCc-c--CC----CCchhhHhHhHHHHHHHHhc-CccchH
Q 012371 175 ATTVFIPSFHNYRIWSFLGLIMTSFTAWYLTIASLVHGQVEGV-K--HS----GPTKMVLYFTGATNILYTFG-GHAVTV 246 (465)
Q Consensus 175 ~pl~~l~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~g~~~~~-~--~~----~~~~~~~~~~a~~~~~faf~-~~~~v~ 246 (465)
.++.+ ...+.++++...+........+.+.+..+.+....+. + +. .......+..++...+=++. ...+.|
T Consensus 170 ~~~~~-~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~vig~~~~~~~~~~ 248 (484)
T PRK11375 170 VGIGF-GGGKVLNKFTAILNPCIYIVFGGMAIWAISLVGIGPIFDYIPSGIQKAENSGFLFLVVINAVVAVWAAPAVSAS 248 (484)
T ss_pred HHHHH-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhccCcccccCCcchHHHHHHHHHHHHHHHHHHHcccc
Confidence 66654 3456666666655554432211221222221111111 1 10 01112334444433333343 334788
Q ss_pred hHhhhccCCccchHHHHHHHHHHHHHHHhHHHHH----HHhhccccccccccccccCcccHHHHHHHHHHHHHHHHH-Hh
Q 012371 247 EIMHAMWKPQKFKSIYLLATLYVLTLTLPSASAV----YWAFGDMLLTHSNAFSLLPRTGFRDTAVILMLIHQFITF-GF 321 (465)
Q Consensus 247 ~i~~~mk~p~~~~~~~~~s~~~~~~~y~~~g~~g----y~~fG~~~~~~~~il~~l~~~~~~~~~~~~~~i~~~~s~-pl 321 (465)
.+.+..|++++-.+...+++.+...+...+|+.. ...||+...|..+++....+......+.+...++...+- ..
T Consensus 249 D~tRy~k~~~~~~~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~~dp~~i~~~~~~~~~~~~a~l~~v~a~~~tN~~~ 328 (484)
T PRK11375 249 DFTQNAHSFRAQALGQTLGLVVAYILFAVASVCIIAGASIHYGADTWNVLDIVQRWDSLFASFFAVLVILMTTISTNATG 328 (484)
T ss_pred chhcccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888877665554445544444433333332 456666543333444444322233334444555555553 34
Q ss_pred hhccHHHHHHHHhcCCCCcchhhHHHh---hhhHHHHHHHHHHhcCCchhhHHhhhhhhhhhhHHh
Q 012371 322 ACTPLYFVWEKFIGVHNTKSTFKRALA---RLPVVIPIWFLAIIFPFFGPINSTVGSLLVSFTVYI 384 (465)
Q Consensus 322 ~~~p~~~~~~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~A~~vp~~~~i~~lvGs~~~~~l~~i 384 (465)
..+|.-..+...+.++-+ .+|-.. -+..+..++.+-.....|..++++.|++.+.+...+
T Consensus 329 N~ys~~~~l~~l~pk~i~---~~~~~~i~~iig~~~~pw~~~~~~~~f~~FL~~lg~~l~Pi~gIm 391 (484)
T PRK11375 329 NIIPAGYQIAALAPTKLT---YKNGVLIASIISLLICPWKLMENQDSIYLFLDIIGGMLGPVIGVM 391 (484)
T ss_pred hcccHHHHHHHhCcCccc---hhhHHHHHHHHHHHhccHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777777642211 122111 111112222111111227788888888876666555
No 55
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=98.67 E-value=5.6e-07 Score=79.29 Aligned_cols=210 Identities=21% Similarity=0.206 Sum_probs=127.8
Q ss_pred HHHHHHhhhhhhhhchhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hhhhc-cc-------
Q 012371 44 AWFSCASNQVAQVLLTLPYSFSQLGLLSGILLQLFYGLMGSWTAYLISILYVEYRT---------RKERE-KV------- 106 (465)
Q Consensus 44 a~~~l~~~~iG~GiL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~ll~~~~~~~~~---------~~~~~-~~------- 106 (465)
...-..|-++|+|.|+||.+|+.+||+.++.++.+.+++++.+....+++....+. +.+++ ..
T Consensus 17 gllymfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~keeeddd~stasd~ 96 (319)
T KOG3832|consen 17 GLLYMFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKKKEEEDDDESTASDD 96 (319)
T ss_pred hHhhhhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhccccccccCCC
Confidence 44567888999999999999999999999999999999999999888866532211 11111 00
Q ss_pred ------cc-----cc-------------cc---ccHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh--
Q 012371 107 ------DF-----RN-------------HV---IQWFEVLDGLLGKHWRNIGLFFNCTFLLFGSVIQLIACASNIYYI-- 157 (465)
Q Consensus 107 ------~~-----~~-------------~~---~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~-- 157 (465)
+| ++ ++ ...++++...|.|.+-.+..+++++|++|-...|....-.+.-++
T Consensus 97 dvli~d~yeraekrpilsvqrrgspnpfeisdkvemgemasmffnkvgln~fyf~iiiylfgdlaiyaaavpfs~m~itc 176 (319)
T KOG3832|consen 97 DVLIADGYERAEKRPILSVQRRGSPNPFEISDKVEMGEMASMFFNKVGLNFFYFAIIIYLFGDLAIYAAAVPFSAMNITC 176 (319)
T ss_pred cEEEecCchhcccCCcceecccCCCCcceeehhhhHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhcCchHhhhhhh
Confidence 00 00 11 146778888899999999999999999999998876554333222
Q ss_pred ---h------------ccCCc------------hhhhHhHHH-HHhhhhccCCCcchhHHHHHHHHHHHHHHHHHHHhhh
Q 012371 158 ---N------------DNLDK------------RTWTYIFGA-CCATTVFIPSFHNYRIWSFLGLIMTSFTAWYLTIASL 209 (465)
Q Consensus 158 ---~------------~~~~~------------~~~~ii~~~-v~~pl~~l~~l~~l~~~s~~~~~~~~~~~~~~~~~~~ 209 (465)
+ .+.++ |.+..++.+ +.+|+.+. .+.+-+++.++..+.--. .... ....
T Consensus 177 aa~g~dscgvead~~~~dtdrcwg~ilrrmdayr~flaiftlll~lpftf~-diqktk~iqiltslmrw~-~~~~-g~~l 253 (319)
T KOG3832|consen 177 AAIGADSCGVEADPCHEDTDRCWGEILRRMDAYRFFLAIFTLLLCLPFTFA-DIQKTKHIQILTSLMRWA-AFIL-GISL 253 (319)
T ss_pred hhcCCccccccCCcccccccccchHHHhhhHHHHHHHHHHHHHHcCceeEe-ccccchhHHHHHHHHHHH-hccc-hhhh
Confidence 0 01111 223333333 33465553 456666666655543311 1111 1111
Q ss_pred hcccCC-Cc--cCCCCchhhHhHhHHHHHHHHhcCccchHhHhhhccCCc
Q 012371 210 VHGQVE-GV--KHSGPTKMVLYFTGATNILYTFGGHAVTVEIMHAMWKPQ 256 (465)
Q Consensus 210 ~~g~~~-~~--~~~~~~~~~~~~~a~~~~~faf~~~~~v~~i~~~mk~p~ 256 (465)
...+.+ +- .+++...+-++-.-++...|+|.+|.+.|.....++.+.
T Consensus 254 ~tmqaeedaa~a~p~arc~cgfgkl~~~aly~~~a~cmapda~gagq~k~ 303 (319)
T KOG3832|consen 254 ATMQAEEDAAAAHPPARCFCGFGKLFGCALYAFMAHCMAPDAIGAGQTKD 303 (319)
T ss_pred hhhhhcccccccCCccccccccccccchhhHHHHhhccCCCCCCCCeecc
Confidence 111111 11 111222333444556789999999999999988887654
No 56
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=98.61 E-value=6.3e-05 Score=75.82 Aligned_cols=257 Identities=12% Similarity=0.062 Sum_probs=141.1
Q ss_pred HHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCchhhhHhHHHHHhhhhccCCCcchhHHHHHHHHH
Q 012371 117 EVLDGLLGKHWRNIGLFFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLIM 196 (465)
Q Consensus 117 ~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~ii~~~v~~pl~~l~~l~~l~~~s~~~~~~ 196 (465)
.+.+..||.+|.++..+.+.+.++|-...-.+..++..... +..+...+.++.++++...+.. -.+.++.++..+...
T Consensus 85 i~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~-~~~~~~~~ili~g~l~~l~~if-G~r~l~~l~~~a~~~ 162 (442)
T COG1457 85 ILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGSG-TGLPVWAGILIIGVLMTLVTIF-GYRALHKLERIAVPL 162 (442)
T ss_pred eeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccccccC-CCCcHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHH
Confidence 46678899999999999999999999988888888763332 4445566667777666655543 234444444444433
Q ss_pred HHHHHHHHHHhhhh-cccCCCccCCCCchhhHhHhHHHHHHHHh--cCccchHhHhhhccCCcc--chHHHHHHHHHHHH
Q 012371 197 TSFTAWYLTIASLV-HGQVEGVKHSGPTKMVLYFTGATNILYTF--GGHAVTVEIMHAMWKPQK--FKSIYLLATLYVLT 271 (465)
Q Consensus 197 ~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~a~~~~~faf--~~~~~v~~i~~~mk~p~~--~~~~~~~s~~~~~~ 271 (465)
......+.+..... ++..+......+.+...+..+++. ++++ ..-....++.+-+|+|+. .-.....+......
T Consensus 163 ~~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~fl~a~sl-v~g~~~sw~~~~aDysRy~~~~t~~~~~~~~~~G~~l~~~ 241 (442)
T COG1457 163 LLLLFLYLLALLFRSKGGLDALWVKGPTSPLSFLSALSL-VIGSFASWGPYAADYSRYAPSPTPSKAFLAAVLGFFLGTS 241 (442)
T ss_pred HHHHHHHHHHHHHhcccccceeeccCCCcchhHHHHHHH-HHHHHHhhhhhhhhhhhhcCCCchHHHHHHHHHHHHHHHH
Confidence 32222222222222 222222111234455555555553 3332 345677788888888874 22334455566666
Q ss_pred HHHhHHHHHHHhhccccccccccccccCcccHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHhcCCCCcchhhHHHhhhh
Q 012371 272 LTLPSASAVYWAFGDMLLTHSNAFSLLPRTGFRDTAVILMLIHQFITFGFACTPLYFVWEKFIGVHNTKSTFKRALARLP 351 (465)
Q Consensus 272 ~y~~~g~~gy~~fG~~~~~~~~il~~l~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~r~~ 351 (465)
+.+.+|.+.-.+-|+..+ ..+....+.. +...+.+...++...+--..+++.--.+..... +-++..+.+...+
T Consensus 242 ~~~ilGa~~a~a~g~~~~-~~~~~~~~G~--~g~~~~lil~l~~~ttN~~nlYsa~ls~~~i~~---~l~k~~~~v~~~v 315 (442)
T COG1457 242 FMMILGAALAAAAGNADS-IADVMLGLGG--FGLPAILILVLGTVTTNANNLYSAGLSFANIIP---KLSKVTRVVIAGV 315 (442)
T ss_pred HHHHHHHHHHHhcCCCch-HHHHHHhccc--HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhh---hhhhHHHHHHHHH
Confidence 667778888888776541 1233333332 444555555555555544444444444433332 1223344443333
Q ss_pred HHHHHHHHHH----hcCCchhhHHhhhhhhhhhhHHh
Q 012371 352 VVIPIWFLAI----IFPFFGPINSTVGSLLVSFTVYI 384 (465)
Q Consensus 352 ~~~~~~~~A~----~vp~~~~i~~lvGs~~~~~l~~i 384 (465)
. ..+++|+ +..+++.++.++|+.........
T Consensus 316 ~--igt~la~~~~~f~~~f~~Fl~~i~~~i~P~~~I~ 350 (442)
T COG1457 316 G--IGTLLALAGPFFYNFFENFLLLLGYFIPPWGGVM 350 (442)
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 3333333 35577888888877764444444
No 57
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=98.36 E-value=0.00046 Score=70.39 Aligned_cols=62 Identities=11% Similarity=0.062 Sum_probs=38.4
Q ss_pred hHhHhHHHHHHHHhcCccchHhHhhhccCCcc-chHHHHHHHHHHHHHHHhHHHHHHHhhccc
Q 012371 226 VLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKSIYLLATLYVLTLTLPSASAVYWAFGDM 287 (465)
Q Consensus 226 ~~~~~a~~~~~faf~~~~~v~~i~~~mk~p~~-~~~~~~~s~~~~~~~y~~~g~~gy~~fG~~ 287 (465)
..+.-++-.-.+++.|-..-.-+..|-|++++ -+|....+..+..++=..+-+.-..+-+++
T Consensus 252 ~afil~f~~~~wt~sGyDa~~H~aEE~~nAsk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D 314 (550)
T KOG1289|consen 252 WAFILGFFNPAWTMSGYDAAAHMAEETKNASKAAPRGIISSIAIGFILGWIIIIGIAYTIPDD 314 (550)
T ss_pred HHHHHhhccceeEEeccCchHHHHHHhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 34444555677778888888889999999876 477666555555544333223333444543
No 58
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=98.29 E-value=0.0015 Score=66.05 Aligned_cols=257 Identities=10% Similarity=0.059 Sum_probs=135.3
Q ss_pred cHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhcc----CCchhhhHhHHHHHhhhhccCCCcchhHH
Q 012371 114 QWFEVLDGLLGKHWRNIGLFFNCTFLLFGSVIQLIACASNIYYINDN----LDKRTWTYIFGACCATTVFIPSFHNYRIW 189 (465)
Q Consensus 114 ~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~----~~~~~~~ii~~~v~~pl~~l~~l~~l~~~ 189 (465)
++.-+.|..||++|..+..+...+...|-........++.++.+.+. .+...+.++.+++..+.+.. .++.++++
T Consensus 59 ~~~v~sR~~FG~~Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~-G~~~i~~~ 137 (386)
T TIGR02358 59 SAMGSLKLSLGSKGSVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGRLFGEESPMLWILIVGILVTLWLLS-GPLAFVWL 137 (386)
T ss_pred CHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 78889999999999998888888888877777777777777665432 12233444455555555543 45667777
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccCCCccCCCCchhhHhHhHHHHHHHH-hcCccchHhHhhhccCCccchHHHHHHHHH
Q 012371 190 SFLGLIMTSFTAWYLTIASLVHGQVEGVKHSGPTKMVLYFTGATNILYT-FGGHAVTVEIMHAMWKPQKFKSIYLLATLY 268 (465)
Q Consensus 190 s~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~fa-f~~~~~v~~i~~~mk~p~~~~~~~~~s~~~ 268 (465)
...+........+...+....+.+.++.. .++.+ ..+..+++...-. -......+++.+..|+|+|.-.....+...
T Consensus 138 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~-~s~~~~~~~~~~~~~swa~~~~DysRy~k~~~~~~~~~~~G~~i 215 (386)
T TIGR02358 138 NNWSVWLLLIATLWLLVVVFSKADLSELW-NRAGD-MSFAVAVELVIAMPLSWLPLIADYTRFARNPRHVFLGTVLGYFI 215 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhhc-CCCCC-ccHHHHHHHHHHHHHHHHHHccchhhhcCCCcceehHHHHHHHH
Confidence 77666555433222222222222111111 11112 2333333322211 123345788888888877766666667777
Q ss_pred HHHHHHhHHHHHHHhhccccccccccccccCcccHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHhcCCCCcchhhHHHh
Q 012371 269 VLTLTLPSASAVYWAFGDMLLTHSNAFSLLPRTGFRDTAVILMLIHQFITFGFACTPLYFVWEKFIGVHNTKSTFKRALA 348 (465)
Q Consensus 269 ~~~~y~~~g~~gy~~fG~~~~~~~~il~~l~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~ 348 (465)
...+...+|.....+.|+.. ...++... ......-++..++...+-....++.-..+...+++.+ ++++.++
T Consensus 216 ~~~~~~~~G~~~~~a~~~~d--~~~~~~~~---g~~~~~~~~~~l~~~~~n~~N~ys~~l~l~~l~~~~~---~~~~~~i 287 (386)
T TIGR02358 216 GSCWMYFLGLAVTLATGQTD--IISILAGA---GLGIPALLIILLSTVTTTFMDIYSAAISTGNLLPRLK---VKHLAIG 287 (386)
T ss_pred HHHHHHHHHHHHHHhcCCCC--HHHHHHhc---cHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc---chHHHHH
Confidence 77777777877777665432 12222221 2222333444445555545555555555555552111 1122111
Q ss_pred hhhHHHHHHHHHHh--cCCchhhHHhhhhhhhhhhHHh
Q 012371 349 RLPVVIPIWFLAII--FPFFGPINSTVGSLLVSFTVYI 384 (465)
Q Consensus 349 r~~~~~~~~~~A~~--vp~~~~i~~lvGs~~~~~l~~i 384 (465)
..++.++++.. ...+..++++.|...+....-+
T Consensus 288 ---~~ii~~~l~~~~~~~~f~~FL~~lg~~~~P~~gI~ 322 (386)
T TIGR02358 288 ---VGVLGTLIALLFPVDKYENFLLLIGSVFAPLYAVV 322 (386)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222222222 3456777777776665544433
No 59
>PRK11017 codB cytosine permease; Provisional
Probab=98.24 E-value=0.0025 Score=64.94 Aligned_cols=171 Identities=12% Similarity=0.061 Sum_probs=88.4
Q ss_pred cHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCchhhhHhHHHHHhhhhccCCCcchhHHHHHH
Q 012371 114 QWFEVLDGLLGKHWRNIGLFFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLG 193 (465)
Q Consensus 114 ~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~ii~~~v~~pl~~l~~l~~l~~~s~~~ 193 (465)
++.-+.+..||.+|..+..+...+...+-........+..++...+ .+...+.+++.++..+.+... .+.++++...+
T Consensus 72 ~~~v~sR~~FG~~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~~-~~~~~~~~i~~~l~~~~~~~G-~~~i~~~~~~~ 149 (404)
T PRK11017 72 STHLLARFSFGEKGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKATG-LDINLLIVLSGLLMTVTAYFG-ISALTILSRIA 149 (404)
T ss_pred CHHHHHHHHhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 8889999999999998887777776666665555555555554433 344445556666666666543 34444444444
Q ss_pred HHHHHHHHHHHHHhhhhc-ccCCCccCCCCchhhHhHhHHHHHHHHh-cCccchHhHhhhccCCccchHHHHHHHHHHHH
Q 012371 194 LIMTSFTAWYLTIASLVH-GQVEGVKHSGPTKMVLYFTGATNILYTF-GGHAVTVEIMHAMWKPQKFKSIYLLATLYVLT 271 (465)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~a~~~~~faf-~~~~~v~~i~~~mk~p~~~~~~~~~s~~~~~~ 271 (465)
........+...+....+ +...+....++.+...+..++...+=.+ ..-.+.++.-+..|+|++--.....++.....
T Consensus 150 ~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~g~~~~~~~~~~DysRy~k~~~~~~~~~~lg~~i~~~ 229 (404)
T PRK11017 150 VPAIALLGGYSVWLAVNDVGGLDGLKAIVPAEPLDFSAALTLVVGSFISGGTLTADFVRFGRSAKIAVLATMVAFFLGNS 229 (404)
T ss_pred HHHHHHHHHHHHHHHHhccCchhhhhcCCCCCcccHHHHHHHHHHHHHHhHhcCCChHhhccCccceeehhHHHHHHHHH
Confidence 333222111111112221 1111111111111123444444322222 33567888888888776543333444444444
Q ss_pred HHHhHHHHHHHhhcc
Q 012371 272 LTLPSASAVYWAFGD 286 (465)
Q Consensus 272 ~y~~~g~~gy~~fG~ 286 (465)
+...+|...-.+.|+
T Consensus 230 ~~~~~G~~~a~~~~~ 244 (404)
T PRK11017 230 LMFIFGAAGAAVYGQ 244 (404)
T ss_pred HHHHHHHHHHHHcCC
Confidence 455556655555554
No 60
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=98.15 E-value=0.0036 Score=60.04 Aligned_cols=131 Identities=15% Similarity=0.156 Sum_probs=87.4
Q ss_pred HHHHHHHhhhhhhhhch---hHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccHHHHH
Q 012371 43 DAWFSCASNQVAQVLLT---LPYSFSQLGLLSGILLQLFYGLMGSWTAYLISILYVEYRTRKEREKVDFRNHVIQWFEVL 119 (465)
Q Consensus 43 ~a~~~l~~~~iG~GiL~---lP~a~~~~G~~~g~i~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~l~ 119 (465)
+-.+-.+.+++|+|-=+ +=-=|..-|+. |....++++.+-..++..+.+...+.+ .++|+|.-
T Consensus 7 ~~~f~~ig~~vGAGfAsGqEi~QFF~~~G~~-s~~gIivs~vlf~~~g~vim~ig~~f~-------------a~~y~~~~ 72 (349)
T COG3949 7 RWAFAFIGTVVGAGFASGQEIMQFFGKYGVY-SILGIILSTVLFTLSGAVIMTIGKKFN-------------ATSYREIL 72 (349)
T ss_pred HHHHHHHHHhhcccccchHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHhc-------------ccchHHHH
Confidence 34455677999999543 11223445665 566677788888888887766543332 23999999
Q ss_pred HHhhchhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCchhhh--HhHHHHHhhhhccCCCcchhHHH
Q 012371 120 DGLLGKHWRNIGLFFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWT--YIFGACCATTVFIPSFHNYRIWS 190 (465)
Q Consensus 120 ~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~--ii~~~v~~pl~~l~~l~~l~~~s 190 (465)
++.+||+...+.+..+.++++++++.-+--.++.+++ .+..++|. ++....+..+.++++.+.+-.+.
T Consensus 73 ~~v~~~~~~ki~d~~iif~lf~~~vVM~AGags~~~e---~~~lP~wiGali~i~~v~i~lfl~~vegi~tvn 142 (349)
T COG3949 73 KYVSGPKFAKIIDIIIIFFLFSTAVVMLAGAGSLLEE---MFGLPYWIGALIIILLVLILLFLGRVEGIITVN 142 (349)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHhccchhHHHH---HhCccHHHHHHHHHHHHHHHHHHhcccceeeeh
Confidence 9999999999999999999999988777666655543 33444443 44444455556666666654433
No 61
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=98.03 E-value=0.017 Score=58.94 Aligned_cols=145 Identities=14% Similarity=0.082 Sum_probs=87.2
Q ss_pred CCchhHHHHHHHhhhhhhh-hchhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccHH
Q 012371 38 GGSVYDAWFSCASNQVAQV-LLTLPYSFSQLGLLSGILLQLFYGLMGSWTAYLISILYVEYRTRKEREKVDFRNHVIQWF 116 (465)
Q Consensus 38 ~~s~~~a~~~l~~~~iG~G-iL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~ 116 (465)
+.+.+...+.+..+.+|++ .++.|....+.|+. +...............++..+. .+| .+..|..
T Consensus 4 ~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~-~~~~~~~~~~~~~~~~~~~~~~----~~~---------~~~~T~~ 69 (407)
T TIGR00813 4 SLGGWVVAASLFASYISASQFLGLPGAIYAYGFA-IGFYELGALVLLIILGWLFVPI----FIN---------NGAYTMP 69 (407)
T ss_pred CCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH----HHH---------cCCCchh
Confidence 4456667777777777665 48888887778864 2222222222222233333221 111 1245999
Q ss_pred HHHHHhhch-hhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCchhhhHhHHHHHhhhhccCCCcchhHHHHHHHH
Q 012371 117 EVLDGLLGK-HWRNIGLFFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLI 195 (465)
Q Consensus 117 ~l~~~~~G~-~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~ii~~~v~~pl~~l~~l~~l~~~s~~~~~ 195 (465)
|..+.-||+ ..+.+..+...+..+......+...+..++.+.+ ++.....++..+++...+...-++...+...+-.+
T Consensus 70 e~l~~Ryg~~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~g-i~~~~~~ii~~~i~~~Yt~~GG~~av~~Td~iQ~~ 148 (407)
T TIGR00813 70 EYLEKRFGKRILRGLSVLSLILYIFLYMSVDLFSGALLIELITG-LDLYLSLLLLGAITILYTVFGGLKAVVWTDTIQAV 148 (407)
T ss_pred HHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-chHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHH
Confidence 999999998 4666666666667776777777777767665542 44444445555566666777777777777766655
Q ss_pred HH
Q 012371 196 MT 197 (465)
Q Consensus 196 ~~ 197 (465)
..
T Consensus 149 i~ 150 (407)
T TIGR00813 149 IM 150 (407)
T ss_pred HH
Confidence 44
No 62
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=97.96 E-value=0.034 Score=57.88 Aligned_cols=149 Identities=13% Similarity=0.062 Sum_probs=89.0
Q ss_pred CCchhHHHHHHHhhhhhhhh-chhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccHH
Q 012371 38 GGSVYDAWFSCASNQVAQVL-LTLPYSFSQLGLLSGILLQLFYGLMGSWTAYLISILYVEYRTRKEREKVDFRNHVIQWF 116 (465)
Q Consensus 38 ~~s~~~a~~~l~~~~iG~Gi-L~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~ 116 (465)
+.+.+...+.+..+.+|++. ++.|-...+.|+........ .....+.+...+.+-.....+| .+..|..
T Consensus 41 ~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------~~~~T~~ 110 (471)
T TIGR02119 41 SMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLGWVLLAMI-QVPTGYFVLGVLGKKFAIISRK---------YNAITIN 110 (471)
T ss_pred cccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH---------cCCccHH
Confidence 45677788888888888765 77888777778642111111 0011111111221110111111 2335999
Q ss_pred HHHHHhhchhh-HHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCchhhhHhHHHHHhhhhccCCCcchhHHHHHHHH
Q 012371 117 EVLDGLLGKHW-RNIGLFFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLI 195 (465)
Q Consensus 117 ~l~~~~~G~~~-~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~ii~~~v~~pl~~l~~l~~l~~~s~~~~~ 195 (465)
|.-++-||++. +++..+...+.+++...+.+...+..++.+.+ ++.....++..++++..+...-+++..+...+-.+
T Consensus 111 e~l~~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~g-i~~~~~iii~~~iv~iYt~~GG~~av~~td~iQ~~ 189 (471)
T TIGR02119 111 DVLKARYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTG-LSYLTALFIFSSSVLIYTTFGGFRAVALTDAIQGI 189 (471)
T ss_pred HHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 99999999654 67777777777776666666666666665543 55555566666667777777777887777776654
Q ss_pred HH
Q 012371 196 MT 197 (465)
Q Consensus 196 ~~ 197 (465)
..
T Consensus 190 v~ 191 (471)
T TIGR02119 190 VM 191 (471)
T ss_pred HH
Confidence 44
No 63
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=97.81 E-value=0.04 Score=55.29 Aligned_cols=312 Identities=12% Similarity=0.049 Sum_probs=142.1
Q ss_pred HHHHhhhhhhhhchhHHHHHh-hc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccHHHHHHHh
Q 012371 46 FSCASNQVAQVLLTLPYSFSQ-LG--LLSGILLQLFYGLMGSWTAYLISILYVEYRTRKEREKVDFRNHVIQWFEVLDGL 122 (465)
Q Consensus 46 ~~l~~~~iG~GiL~lP~a~~~-~G--~~~g~i~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~ 122 (465)
+.+..-.+|+|.|-.|-...+ +| |..+.+..++.+...-..+.+-+ .+ .| .+|+++.++.
T Consensus 2 ~~lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~av-------~~---~g-------G~~~~l~~~~ 64 (378)
T TIGR00796 2 FMLFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLIAL-------AL---VG-------GGYDSLSARI 64 (378)
T ss_pred hHHHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhee-------ee---cC-------CCHHHHHHHh
Confidence 346677899999999966444 55 66777777777776554444311 11 11 1788998875
Q ss_pred hchhhHHHHHHHHHHHH---H----HHHHHHHHHhHhhhhhhhccCCchhhhHhHHHHHhhhhccCCCcchhHHHHHHHH
Q 012371 123 LGKHWRNIGLFFNCTFL---L----FGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLI 195 (465)
Q Consensus 123 ~G~~~~~~~~~~~~~~~---~----g~~~~y~i~~~~~l~~~~~~~~~~~~~ii~~~v~~pl~~l~~l~~l~~~s~~~~~ 195 (465)
||+...+..+.+++.. + ...++|-.. +..+.+.........+++++..-+++.=+++.-+....++-+
T Consensus 65 -g~~f~~lf~~~~~l~iGP~~aiPRtaa~s~e~~----i~p~~~~~~~~~~l~i~siiff~i~~~l~~~~~k~~~~iGk~ 139 (378)
T TIGR00796 65 -GKVFGILFTVILYLTIGPLFAIPRTATVSFEMG----IAPLLHSPTSLLALFIFSLIFFAVVLLLSLNPSKLIDRVGKF 139 (378)
T ss_pred -ChHHHHHHHHHHHHHHHhchhhhHHHHHHHHHH----HHhccCcccchHHHHHHHHHHHHHHHHHHcCcccHHHHhHHH
Confidence 7877776655444221 1 122334332 222222211223334455544444333344555566666666
Q ss_pred HHH---HHHHHHHHhhhhcc--cCCCccCCCC--chhh-H------hHhHHHHHHHHhcCccchHhHhh-hccCCccc-h
Q 012371 196 MTS---FTAWYLTIASLVHG--QVEGVKHSGP--TKMV-L------YFTGATNILYTFGGHAVTVEIMH-AMWKPQKF-K 259 (465)
Q Consensus 196 ~~~---~~~~~~~~~~~~~g--~~~~~~~~~~--~~~~-~------~~~a~~~~~faf~~~~~v~~i~~-~mk~p~~~-~ 259 (465)
.+- .....+++..+.+. .......... ..+. + ...+++-+.|+ -..+-.+.. ++|+|++. +
T Consensus 140 LTP~lLi~l~~lii~g~~~p~g~~~~~~~~~~~~~~f~~g~l~GY~TmD~laal~fg---~iiv~~i~~~g~~~~~~~~~ 216 (378)
T TIGR00796 140 LTPALLVTLLALIIKALLWPAGPILAASGAYASQQAFSKGFLEGYLTMDALAALVFG---IIVVNAIRSRGVTKPKKITK 216 (378)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCcCCcccccccccHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhCCCCHHHHHH
Confidence 552 11222233344332 1111100010 1111 1 12344444443 344455555 89998765 4
Q ss_pred HHHHHHH---HHHHHHHHhHHHHHHHhhcc--ccccccccccccCccc----HHHHHHHHHHHHHHHHHHhhhccHHHHH
Q 012371 260 SIYLLAT---LYVLTLTLPSASAVYWAFGD--MLLTHSNAFSLLPRTG----FRDTAVILMLIHQFITFGFACTPLYFVW 330 (465)
Q Consensus 260 ~~~~~s~---~~~~~~y~~~g~~gy~~fG~--~~~~~~~il~~l~~~~----~~~~~~~~~~i~~~~s~pl~~~p~~~~~ 330 (465)
+....+. .....+|.-.+..|...-+. +..+.+.++.+.-+.. -..+..+.+.++++.+---......+.+
T Consensus 217 ~~i~~G~ia~i~l~~vY~~L~~lGa~~~~~~~~~~~~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f 296 (378)
T TIGR00796 217 YTIKAGLIAAVLLAFIYLSLFYLGATSAAAAGDAVNGAQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYF 296 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccCCcHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4544444 23333455555555433211 1001233444432211 1233333444444444322223344444
Q ss_pred HHHhcCCCCcchhhHHHhhhhHHHHHHHHHHhcCCchhhHHhhhhhhhhhhHHhhhhHHHHHHh
Q 012371 331 EKFIGVHNTKSTFKRALARLPVVIPIWFLAIIFPFFGPINSTVGSLLVSFTVYIIPALAHMITF 394 (465)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~A~~vp~~~~i~~lvGs~~~~~l~~ilP~l~~l~~~ 394 (465)
++... | ...+.++ ....+.+.+++.. .++.++++ ....+.+++|..+-+...
T Consensus 297 ~~~~~---k-~~y~~~v--~~~~l~s~~ia~~--Gl~~Ii~~----~~PvL~~~YP~~i~lill 348 (378)
T TIGR00796 297 HKLVP---K-LSYKTWV--IVFTLFSFIVANL--GLTQIISI----SIPVLMIIYPLAIVLILL 348 (378)
T ss_pred HHhcC---C-CCHHHHH--HHHHHHHHHHHHh--CHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 44431 1 1111111 1222233333332 66777764 467788888887765543
No 64
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=97.79 E-value=0.02 Score=58.43 Aligned_cols=145 Identities=13% Similarity=0.117 Sum_probs=81.5
Q ss_pred CCchhHHHHHHHhhhhhhh-hchhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccHH
Q 012371 38 GGSVYDAWFSCASNQVAQV-LLTLPYSFSQLGLLSGILLQLFYGLMGSWTAYLISILYVEYRTRKEREKVDFRNHVIQWF 116 (465)
Q Consensus 38 ~~s~~~a~~~l~~~~iG~G-iL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~ 116 (465)
+.+.+...+.+..+.+|++ .++.|-...+.|+.. ....+...+........+.+ +.++ .+..|..
T Consensus 7 ~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~~-~~~~~~~~~~~~~~~~~~~~---~~r~----------~~~~T~~ 72 (406)
T PF00474_consen 7 SLGWWVVAFSLVATWISAWTFIGFPGFAYSYGISG-LWYAIGYAIGFLLFALFFAP---RLRR----------SGAVTIP 72 (406)
T ss_dssp ---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GGG-GHHHHHHHHHHHHHHHHTHH---HHHH----------TT--SHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcce-eeeccccchhHHHHHHHHHH---hhcc----------cchhhhh
Confidence 4456777788888888775 578898888888753 33333333333333344432 2221 1234999
Q ss_pred HHHHHhhchhh--HHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCchhhhHhHHHHHhhhhccCCCcchhHHHHHHH
Q 012371 117 EVLDGLLGKHW--RNIGLFFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGL 194 (465)
Q Consensus 117 ~l~~~~~G~~~--~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~ii~~~v~~pl~~l~~l~~l~~~s~~~~ 194 (465)
|.-++-||++. +.+..+...+....-...++...+..++.+.+ ++.....++..++.+..+...-+++..+...+-.
T Consensus 73 e~~~~Ryg~~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~g-i~~~~~~~i~~~i~~iYt~~GGl~av~~td~iQ~ 151 (406)
T PF00474_consen 73 EYLEKRYGSKALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFG-IPYNTAILIVGVIVIIYTFFGGLRAVAWTDFIQG 151 (406)
T ss_dssp HHHHHHT-HHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHTTCTT------SHHHHHH
T ss_pred hhhhhhcCCchhhhhhcccccchhhhhhhhccccccccchhhccc-hhhhHHHHHHHHHHHHhhhhhhHhhhhHHHHHHH
Confidence 99999999998 65555555555555556666666666665543 5555556666667777777777777777776665
Q ss_pred HHH
Q 012371 195 IMT 197 (465)
Q Consensus 195 ~~~ 197 (465)
+..
T Consensus 152 ~i~ 154 (406)
T PF00474_consen 152 VIM 154 (406)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 65
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=97.79 E-value=0.069 Score=55.78 Aligned_cols=148 Identities=11% Similarity=0.030 Sum_probs=82.5
Q ss_pred CchhHHHHHHHhhhhhh-hhchhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccHHH
Q 012371 39 GSVYDAWFSCASNQVAQ-VLLTLPYSFSQLGLLSGILLQLFYGLMGSWTAYLISILYVEYRTRKEREKVDFRNHVIQWFE 117 (465)
Q Consensus 39 ~s~~~a~~~l~~~~iG~-GiL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~ 117 (465)
.+.+...+.+..+.+|+ ..++.|-...+-|+....... ......+.+..++..-..+..+| .+..|..|
T Consensus 43 ~~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~---------~~~~T~~e 112 (483)
T PRK09442 43 MGGFVLAMTLIATYISASSFIGGPGAAYKYGLGWVLLAM-IQVPTVWLSLGILGKKFAILARK---------YNAVTLND 112 (483)
T ss_pred ccHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH---------cCCccHHH
Confidence 34566777777777666 457888776677764211111 10111111222222111111111 23459999
Q ss_pred HHHHhhchhh-HHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCchhhhHhHHHHHhhhhccCCCcchhHHHHHHHHH
Q 012371 118 VLDGLLGKHW-RNIGLFFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLIM 196 (465)
Q Consensus 118 l~~~~~G~~~-~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~ii~~~v~~pl~~l~~l~~l~~~s~~~~~~ 196 (465)
..++-||++. +++..+......+....+.+...+..++.+. +++.....++..++++..+.+.-+++..+...+-.+.
T Consensus 113 ~l~~Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~-gi~~~~~iii~~~iv~iYt~~GGl~av~~TD~iQ~~i 191 (483)
T PRK09442 113 MLRARYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETAT-GISYETGLLIFGITVALYTAFGGFRAVVLTDALQGIV 191 (483)
T ss_pred HHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 9999998654 5555555555555555555656666665543 3455555566666667777777778777777666544
Q ss_pred H
Q 012371 197 T 197 (465)
Q Consensus 197 ~ 197 (465)
.
T Consensus 192 ~ 192 (483)
T PRK09442 192 M 192 (483)
T ss_pred H
Confidence 4
No 66
>PRK12488 acetate permease; Provisional
Probab=97.75 E-value=0.086 Score=55.96 Aligned_cols=144 Identities=17% Similarity=0.107 Sum_probs=86.0
Q ss_pred CCchhHHHHHHHhhhhhhhh-chhHHHHHhhchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhcccccccccccH
Q 012371 38 GGSVYDAWFSCASNQVAQVL-LTLPYSFSQLGLLSGILLQLFYGLMGSWT-AYLISILYVEYRTRKEREKVDFRNHVIQW 115 (465)
Q Consensus 38 ~~s~~~a~~~l~~~~iG~Gi-L~lP~a~~~~G~~~g~i~l~~~~~~~~~s-~~ll~~~~~~~~~~~~~~~~~~~~~~~~y 115 (465)
+.+.+...+.+..+.++++. ++.|-...+.|+- +....+ ...+.+.- ..++. ..+++ . ...|.
T Consensus 68 ~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~-~~~~~~-g~~~g~~~~~~~~a---~~lr~----~------g~~T~ 132 (549)
T PRK12488 68 GLTGMQNGLAIAGDMISAASFLGISAMMFMNGYD-GLLYAL-GVLAGWPIILFLIA---ERLRN----L------GKYTF 132 (549)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChh-HHHHHH-HHHHHHHHHHHHHH---HHHHH----C------CCcch
Confidence 45667777777888777765 8899887788864 222111 11111111 11222 12221 1 12489
Q ss_pred HHHHHHhhc-hhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCchhhhHhHHHHHhhhhccCCCcchhHHHHHHH
Q 012371 116 FEVLDGLLG-KHWRNIGLFFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGL 194 (465)
Q Consensus 116 ~~l~~~~~G-~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~ii~~~v~~pl~~l~~l~~l~~~s~~~~ 194 (465)
.|.-++-|| |..|.+..+...+..+.-...++...+..++.+. .++.....++.++++...+...-+++..+...+-.
T Consensus 133 ~d~l~~Rf~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~-gi~~~~~iii~~~i~~~Yt~~GGm~av~~td~iQ~ 211 (549)
T PRK12488 133 ADVVSYRLAQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLF-GISYLYAVVIVGALMVLYVTFGGMLATTWVQIIKA 211 (549)
T ss_pred HHHHHHHcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence 998888887 5578877776666666555666666666666553 34444445566666677777777888877777665
Q ss_pred HHH
Q 012371 195 IMT 197 (465)
Q Consensus 195 ~~~ 197 (465)
+..
T Consensus 212 ~im 214 (549)
T PRK12488 212 VLL 214 (549)
T ss_pred HHH
Confidence 444
No 67
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=97.68 E-value=0.1 Score=54.66 Aligned_cols=145 Identities=14% Similarity=0.063 Sum_probs=93.9
Q ss_pred hHHHHHHHhhhhh-hhhchhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccHHHHHH
Q 012371 42 YDAWFSCASNQVA-QVLLTLPYSFSQLGLLSGILLQLFYGLMGSWTAYLISILYVEYRTRKEREKVDFRNHVIQWFEVLD 120 (465)
Q Consensus 42 ~~a~~~l~~~~iG-~GiL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~ 120 (465)
+-..+...-+.++ .-.+++|-...+.|+....+.... ..........+.+-..++. + +++..|..|.-+
T Consensus 43 ~v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~-~~~~~~~~~~~~~rl~~~~-~--------~~~~~T~~d~l~ 112 (493)
T COG0591 43 FVYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGL-LIGAFLLWLLFAPRLRRLA-K--------ARGATTIPDFLE 112 (493)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHH-HHHHHHHHHHHHHHHHHHh-c--------ccCCccHHHHHH
Confidence 3455555666666 677999999999997643333321 1233333333332212222 1 234459999999
Q ss_pred Hhhc-hhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCchhhhHhHHHHHhhhhccCCCcchhHHHHHHHHHH
Q 012371 121 GLLG-KHWRNIGLFFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLIMT 197 (465)
Q Consensus 121 ~~~G-~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~ii~~~v~~pl~~l~~l~~l~~~s~~~~~~~ 197 (465)
+-|| +..|.+..++..+..+.-+...+...+..++...+ .+...-.++...+++..+.+--+++..+...+--...
T Consensus 113 ~Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g-i~~~~~~~~~~~~v~~Yt~~gG~~av~~Td~iqg~im 189 (493)
T COG0591 113 ARFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG-ISYVTGILIGALIVALYTFLGGLRAVVWTDFIQGLIM 189 (493)
T ss_pred HHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHH
Confidence 9999 88899999999999999888888888887755544 5555555555666666677766777777666544433
No 68
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=97.66 E-value=0.12 Score=54.87 Aligned_cols=144 Identities=13% Similarity=0.104 Sum_probs=79.1
Q ss_pred CCchhHHHHHHHhhhhhh-hhchhHHHHHhhchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhcccccccccccH
Q 012371 38 GGSVYDAWFSCASNQVAQ-VLLTLPYSFSQLGLLSGILLQLFYGLMGS-WTAYLISILYVEYRTRKEREKVDFRNHVIQW 115 (465)
Q Consensus 38 ~~s~~~a~~~l~~~~iG~-GiL~lP~a~~~~G~~~g~i~l~~~~~~~~-~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y 115 (465)
+.+.+...+.+..+.+++ ..++.|-...+.|+- +....+ ...+.+ ....++.+ ..++ .+ ..|.
T Consensus 68 ~~~~~~~g~si~at~~SaasflG~~G~~y~~G~~-~~~~~~-g~~~~~~i~~~~~a~---~lrr----~g------~~T~ 132 (549)
T TIGR02711 68 NITGFQNGLAIAGDYMSAASFLGISALVYTSGYD-GLIYSL-GFLVGWPIILFLIAE---RLRN----LG------RYTF 132 (549)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-HHHHHH-HHHHHHHHHHHHHHH---HHHH----cC------CccH
Confidence 344566666666666654 568899877777864 222221 111111 11122221 1111 11 2489
Q ss_pred HHHHHHhhc-hhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCchhhhHhHHHHHhhhhccCCCcchhHHHHHHH
Q 012371 116 FEVLDGLLG-KHWRNIGLFFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGL 194 (465)
Q Consensus 116 ~~l~~~~~G-~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~ii~~~v~~pl~~l~~l~~l~~~s~~~~ 194 (465)
.|..++-|| |..|.+..+...+..+.-...++...+..++.+.+ ++...-.++.+++++..+...-++...+...+-.
T Consensus 133 ~d~l~~Rf~s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~g-i~~~~~iii~~~i~~~Yt~~GGm~av~~td~iQ~ 211 (549)
T TIGR02711 133 ADVASYRLKQRPIRILSACGSLVVVALYLIAQMVGAGKLIELLFG-LNYHVAVVLVGILMVMYVLFGGMLATTWVQIIKA 211 (549)
T ss_pred HHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 998888887 44577666555555444445555555555555533 4444445566666666677766777777666555
Q ss_pred HHH
Q 012371 195 IMT 197 (465)
Q Consensus 195 ~~~ 197 (465)
+..
T Consensus 212 ~im 214 (549)
T TIGR02711 212 VLL 214 (549)
T ss_pred HHH
Confidence 443
No 69
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=97.52 E-value=0.0036 Score=64.58 Aligned_cols=169 Identities=6% Similarity=-0.075 Sum_probs=79.9
Q ss_pred cHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccC-C-------------chhh--hHhHHHHHhhh
Q 012371 114 QWFEVLDGLLGKHWRNIGLFFNCTFLLFGSVIQLIACASNIYYINDNL-D-------------KRTW--TYIFGACCATT 177 (465)
Q Consensus 114 ~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~-~-------------~~~~--~ii~~~v~~pl 177 (465)
++.-+.+..||.+|..+..+...+...|-........++.+..+.+.. + ...+ .++..++..+.
T Consensus 72 ~~~v~sR~~FG~~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 151 (440)
T PF02133_consen 72 PTMVLSRASFGYRGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGIIFGSFLWIGNAIIGIALPLWVCFFIFWLIQTLF 151 (440)
T ss_dssp -HHHHTTTTS-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HH-----------HHHHHHHHHHHHH
T ss_pred CchhcchhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhhhhhcchhhHHHHHHHHHHHHHHH
Confidence 677888999999999999888888888888777778888887654322 1 1111 11222222222
Q ss_pred hccCCCcchhHHHHHHHHHHHHHHHHHHHhhhhcccC-CCccCC-CCchhhHhHhHHHHHHHHh-cCccchHhHhhhccC
Q 012371 178 VFIPSFHNYRIWSFLGLIMTSFTAWYLTIASLVHGQV-EGVKHS-GPTKMVLYFTGATNILYTF-GGHAVTVEIMHAMWK 254 (465)
Q Consensus 178 ~~l~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~-~~~~~~~~~~a~~~~~faf-~~~~~v~~i~~~mk~ 254 (465)
.. ..++.++.+............+........+... +..+.. .+.....+..++...+-.+ ..-.+.+...+.+|+
T Consensus 152 ~~-~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~DysRy~~~ 230 (440)
T PF02133_consen 152 AI-YGMKALRRLAVIAAPILLVVFIGMLIWALSKAGGGPLLSAPASPSPSGSFLAAIALVIGSWISWAPNASDYSRYAKS 230 (440)
T ss_dssp HC-THHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCT-HHHCCS--S----S-HHHHHHHHHCCCHHHHCCCHHHHTTC--
T ss_pred Hh-cCHHHHHhHHhhhhHHHHhhhhheeEEEeecCCcchhhhCcccchhHHHHHHHHHHHHhhhhhhhhccccHHhhCCC
Confidence 22 2345555544444332222111111111111111 001110 1111012333333222111 123456688888988
Q ss_pred CccchHHHHHHHHHHHHHHHhHHHHHHHh
Q 012371 255 PQKFKSIYLLATLYVLTLTLPSASAVYWA 283 (465)
Q Consensus 255 p~~~~~~~~~s~~~~~~~y~~~g~~gy~~ 283 (465)
+++-.+....+..........+|+.|...
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~g~lg~~~ 259 (440)
T PF02133_consen 231 DTSAWWGFWLGFPGGFIPFVLVGILGAAA 259 (440)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEeehhhhHHHHHHHHHHHHHHH
Confidence 77766766666666555555555555443
No 70
>PRK09395 actP acetate permease; Provisional
Probab=97.49 E-value=0.2 Score=53.22 Aligned_cols=145 Identities=10% Similarity=0.090 Sum_probs=81.4
Q ss_pred CCchhHHHHHHHhhhhhhh-hchhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccHH
Q 012371 38 GGSVYDAWFSCASNQVAQV-LLTLPYSFSQLGLLSGILLQLFYGLMGSWTAYLISILYVEYRTRKEREKVDFRNHVIQWF 116 (465)
Q Consensus 38 ~~s~~~a~~~l~~~~iG~G-iL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~ 116 (465)
+.+.+...+.+..+.+|++ .++.|-.....|+.. ....+...+.......++. ...++ . ...|+.
T Consensus 70 ~l~~~~~~~si~At~~Sa~tfiG~~g~~y~~G~~~-~~~~~~~~~g~~~~~~~~~---~~~r~----~------g~~T~~ 135 (551)
T PRK09395 70 GITGFQNGLAIAGDYMSAASFLGISALVFTSGYDG-LIYSIGFLVGWPIILFLIA---ERLRN----L------GKYTFA 135 (551)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHhhHHHHHhCHHH-HHHHHHHHHHHHHHHHHHH---HHHhh----C------CCccHH
Confidence 3445666666777777654 488998777788742 2221111111111112221 11111 1 224999
Q ss_pred HHHHHhhch-hhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCchhhhHhHHHHHhhhhccCCCcchhHHHHHHHH
Q 012371 117 EVLDGLLGK-HWRNIGLFFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLI 195 (465)
Q Consensus 117 ~l~~~~~G~-~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~ii~~~v~~pl~~l~~l~~l~~~s~~~~~ 195 (465)
|..+.-||+ ..|.+..+...+..+.-....+.-.+..++.+.+ ++.....++.+++++..+...-+++..+...+-.+
T Consensus 136 d~l~~Rygs~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~g-i~~~~~ili~~~i~~iYt~~GGm~av~~TD~iQ~i 214 (551)
T PRK09395 136 DVASYRLKQGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFG-LNYHVAVVLVGVLMMVYVLFGGMLATTWVQIIKAV 214 (551)
T ss_pred HHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 999888984 4677766655554444445555555555555533 45555556666666777777677777776665544
Q ss_pred HH
Q 012371 196 MT 197 (465)
Q Consensus 196 ~~ 197 (465)
..
T Consensus 215 im 216 (551)
T PRK09395 215 LL 216 (551)
T ss_pred HH
Confidence 33
No 71
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=97.48 E-value=0.19 Score=52.76 Aligned_cols=151 Identities=14% Similarity=0.086 Sum_probs=80.3
Q ss_pred cCCchhHHHHHHHhhhhhhhh-chhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccH
Q 012371 37 HGGSVYDAWFSCASNQVAQVL-LTLPYSFSQLGLLSGILLQLFYGLMGSWTAYLISILYVEYRTRKEREKVDFRNHVIQW 115 (465)
Q Consensus 37 ~~~s~~~a~~~l~~~~iG~Gi-L~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y 115 (465)
++.+.+...+.+..+.+++.. ++.|-...+.|+.. ....+...+.......++.+ ..+.... ++.+..|.
T Consensus 40 r~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~~G~~~-~~~~~~~~~~~~l~~~~~~~---~l~~~~~-----~~~~~~T~ 110 (502)
T PRK15419 40 RSLGPFVTALSAGASDMSGWLLMGLPGAVFLSGISE-SWIAIGLTLGAWINWKLVAG---RLRVHTE-----YNNNALTL 110 (502)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHhhHHHHHcCHHH-HHHHHHHHHHHHHHHHHHHH---HHHHHHH-----HhcCceeH
Confidence 345667777777777777765 77998888888653 11111111111111112211 1111100 01233488
Q ss_pred HHHHHHhhchhhHH---HHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCchhhhHhHHHHHhhhhccCCCcchhHHHHH
Q 012371 116 FEVLDGLLGKHWRN---IGLFFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFL 192 (465)
Q Consensus 116 ~~l~~~~~G~~~~~---~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~ii~~~v~~pl~~l~~l~~l~~~s~~ 192 (465)
.|.-++-||++.+. +..+........-+.+.+...+..++.+.+ ++.....++.+++.+..+...-++...+...+
T Consensus 111 ~e~l~~Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~g-i~~~~~iii~~~iv~iYt~~GGl~aV~~TD~i 189 (502)
T PRK15419 111 PDYFTGRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFG-MSYETALWAGAAATILYTFIGGFLAVSWTDTV 189 (502)
T ss_pred HHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 89888889865443 333333334333334444444555554433 45555556666677777777777777777776
Q ss_pred HHHHH
Q 012371 193 GLIMT 197 (465)
Q Consensus 193 ~~~~~ 197 (465)
-.+.+
T Consensus 190 Q~~im 194 (502)
T PRK15419 190 QASLM 194 (502)
T ss_pred HHHHH
Confidence 65544
No 72
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=97.41 E-value=0.23 Score=52.00 Aligned_cols=150 Identities=13% Similarity=0.095 Sum_probs=77.0
Q ss_pred CCchhHHHHHHHhhhhhhh-hchhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccHH
Q 012371 38 GGSVYDAWFSCASNQVAQV-LLTLPYSFSQLGLLSGILLQLFYGLMGSWTAYLISILYVEYRTRKEREKVDFRNHVIQWF 116 (465)
Q Consensus 38 ~~s~~~a~~~l~~~~iG~G-iL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~ 116 (465)
+-+.+-..+.+..+.+++. .++.|-...+.|+.. ........+........+.+-.+++.++ +.+..|..
T Consensus 37 ~~~~~~~~~s~~At~~s~~~~~G~~g~~y~~G~~~-~~~~~g~~~~~~~~~~~~~~~~r~~~~~--------~~~~~T~~ 107 (487)
T TIGR02121 37 SLGPFVTALSAGASDMSGWLLMGLPGALYVTGLSE-LWIAIGLTIGAYINWKFVAPRLRVYTEA--------AHNSITLP 107 (487)
T ss_pred cccHHHHHHHHHHHHHhHHHHHhhHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHh--------hcCCccHH
Confidence 3456666666666666654 577887777778753 2221211222222233333211111110 11235889
Q ss_pred HHHHHhhchhhHH---HHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCchhhhHhHHHHHhhhhccCCCcchhHHHHHH
Q 012371 117 EVLDGLLGKHWRN---IGLFFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLG 193 (465)
Q Consensus 117 ~l~~~~~G~~~~~---~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~ii~~~v~~pl~~l~~l~~l~~~s~~~ 193 (465)
|.-++-||++.+. +..+...+....-....+...+..++.+.+ ++.....++..++.+..+...-+++..+...+-
T Consensus 108 e~l~~Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~g-i~~~~~iii~~~i~~~Yt~~GGl~av~~TD~iQ 186 (487)
T TIGR02121 108 DFFENRFNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFG-LDYKTGLLIGALIIVIYTFFGGFLAVSWTDFVQ 186 (487)
T ss_pred HHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 9999999965443 333333333333333344444445554432 454445555566666667776677777766665
Q ss_pred HHHH
Q 012371 194 LIMT 197 (465)
Q Consensus 194 ~~~~ 197 (465)
.+..
T Consensus 187 ~~i~ 190 (487)
T TIGR02121 187 GLLM 190 (487)
T ss_pred HHHH
Confidence 5444
No 73
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=97.15 E-value=0.37 Score=49.06 Aligned_cols=151 Identities=17% Similarity=0.180 Sum_probs=81.5
Q ss_pred cCCchhHHHHHHHhhhhhhh-hchhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccH
Q 012371 37 HGGSVYDAWFSCASNQVAQV-LLTLPYSFSQLGLLSGILLQLFYGLMGSWTAYLISILYVEYRTRKEREKVDFRNHVIQW 115 (465)
Q Consensus 37 ~~~s~~~a~~~l~~~~iG~G-iL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y 115 (465)
++.|.+|+.+..+.+.+|+| ++++|.+.+..| ..+++.+-+.+++..-+.+.-+.....++++++ ++ +++-. ..
T Consensus 45 g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GG-pGAvFWMWI~allGm~~~~~e~~L~~~yr~~~~-~g-~~~GG--P~ 119 (425)
T TIGR00835 45 GGVSSFQALFTSLAARVGIGNIVGVATAIAIGG-PGAVFWMWVTAFIGMATKFVESTLAQKYRERDA-DG-VFRGG--PM 119 (425)
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHHHHHeeeeCC-CC-CEecC--hH
Confidence 34799999999999999998 999999988777 335666666666666555555544455554321 11 01000 11
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCchhhhH-hHHHHHhhhhccCCCcchhHHHHHHH
Q 012371 116 FEVLDGLLGKHWRNIGLFFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTY-IFGACCATTVFIPSFHNYRIWSFLGL 194 (465)
Q Consensus 116 ~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~i-i~~~v~~pl~~l~~l~~l~~~s~~~~ 194 (465)
..+-+...||+...+..+.+..+....+..+.....+.++. .++.+.|.. +..+++.-+....-++.+..++-.-+
T Consensus 120 yyi~~gl~~k~lg~lfa~~~i~~f~~~~~~Q~nsi~~~~~~---~~~~~~~v~~i~l~~l~~~vi~GGik~Ia~v~~~lv 196 (425)
T TIGR00835 120 YYIKKGLGMRWLAVLFAVFLIASFGIGNMVQANAIASALSN---AFNVPKLVTGIVLTVLTALIIFGGLKRIAKISSVVV 196 (425)
T ss_pred HHHHHHhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---HcCCcHHHHHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 56766667776655555542223222233334344444442 122223322 22222222333445666665555444
Q ss_pred H
Q 012371 195 I 195 (465)
Q Consensus 195 ~ 195 (465)
-
T Consensus 197 P 197 (425)
T TIGR00835 197 P 197 (425)
T ss_pred H
Confidence 3
No 74
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=97.10 E-value=0.54 Score=50.04 Aligned_cols=145 Identities=10% Similarity=-0.026 Sum_probs=81.2
Q ss_pred cCCchhHHHHHHHhhhhhhh-hchhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccH
Q 012371 37 HGGSVYDAWFSCASNQVAQV-LLTLPYSFSQLGLLSGILLQLFYGLMGSWTAYLISILYVEYRTRKEREKVDFRNHVIQW 115 (465)
Q Consensus 37 ~~~s~~~a~~~l~~~~iG~G-iL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y 115 (465)
++.+.+...+.+..+.++++ .++.|-.....|+-. ................++.+- +++ ....|.
T Consensus 32 r~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~~-~~~~~g~~~~~~~~~~~~~p~---~rr----------~~~~T~ 97 (552)
T TIGR03648 32 RGVPPVANGMATAADWMSAASFISMAGLIAFLGYDG-LAYLMGWTGGYVLLALLLAPY---LRK----------FGKYTV 97 (552)
T ss_pred CCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChHH-HHHHHHHHHHHHHHHHHHHHH---HHH----------CCCccH
Confidence 35567777788888877664 588887766777632 211111111111222333322 221 123488
Q ss_pred HHHHHHhhchh-hHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCchhhhHhHHHHHhhhhccCCCcchhHHHHHHH
Q 012371 116 FEVLDGLLGKH-WRNIGLFFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGL 194 (465)
Q Consensus 116 ~~l~~~~~G~~-~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~ii~~~v~~pl~~l~~l~~l~~~s~~~~ 194 (465)
.|.-++-||++ .+++..+...+..+.-....+...+..++.+.+ ++.....++.+++++..+...-+++..+...+-.
T Consensus 98 ~e~l~~Rf~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~g-i~~~~~iii~~~i~~iYt~~GG~~aV~~TD~iQ~ 176 (552)
T TIGR03648 98 PDFIGDRYYSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLE-VDFETGVFIGMAIVFFYAVLGGMKGVTWTQVAQY 176 (552)
T ss_pred HHHHHHHhCCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 88888888855 466666555555555455555555555555433 4444455566666666677766777777666554
Q ss_pred HH
Q 012371 195 IM 196 (465)
Q Consensus 195 ~~ 196 (465)
+.
T Consensus 177 ii 178 (552)
T TIGR03648 177 IV 178 (552)
T ss_pred HH
Confidence 33
No 75
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=97.05 E-value=0.024 Score=55.59 Aligned_cols=195 Identities=13% Similarity=0.082 Sum_probs=115.9
Q ss_pred CCchhHHHHHHHhhhhhhhhchhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccHHH
Q 012371 38 GGSVYDAWFSCASNQVAQVLLTLPYSFSQLGLLSGILLQLFYGLMGSWTAYLISILYVEYRTRKEREKVDFRNHVIQWFE 117 (465)
Q Consensus 38 ~~s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~ 117 (465)
+++.+..+-|=..++-|+|.+-=|..-.+-||+|+.+.+++-+++.---.....-. .+.| ++-+|.+|
T Consensus 51 P~~~~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaVHD~~sl~---~SvR---------~~G~Si~~ 118 (376)
T PF02554_consen 51 PTNKWVLFGHHFASIAGAGPIVGPILAAQFGWLPALLWIVFGCIFAGAVHDYGSLM---ASVR---------HKGKSIGE 118 (376)
T ss_pred CCchHHhhHHHHHHHhccccchHHHHHHHhcchHHHHHHHHccHHHHHHHHHHHHh---hhhc---------CCCccHHH
Confidence 46667888899999999999999988899999998887765444332221222111 1222 22249999
Q ss_pred HHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCchhhhHhHHHHHhhhhccCCCcchhHHHHHHHHHH
Q 012371 118 VLDGLLGKHWRNIGLFFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLIMT 197 (465)
Q Consensus 118 l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~ii~~~v~~pl~~l~~l~~l~~~s~~~~~~~ 197 (465)
++++..||++|.+..+..++.+..+..++....++.+... +......+..+..++..-+...|.--++...+.++++..
T Consensus 119 i~~~~lG~~~~~lf~~f~~~~lilV~avF~~v~a~~~~~~-p~~~~~~~~~I~~Ai~~G~~~y~~~~~~~~~t~i~vvll 197 (376)
T PF02554_consen 119 IAGKYLGKRAKKLFLIFIFFLLILVIAVFADVVANTFVNS-PWAATSSLLFIPIAILFGLLVYKRGGNLGPATIIGVVLL 197 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-hhHHHHHHHHHHHHHHHhHhheecCCchHhhHHHHHHHH
Confidence 9999999999999999988888888888887777666431 111111222222222332333333344556666665443
Q ss_pred HHHHHHHHHhhhhcccCCCccCCCCchhhHhHhHHHHHHHHhcCccchHhHhhhccCCccchHH
Q 012371 198 SFTAWYLTIASLVHGQVEGVKHSGPTKMVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKSI 261 (465)
Q Consensus 198 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~v~~i~~~mk~p~~~~~~ 261 (465)
+. ++..|..-+.+. .+ ..... .+.+.|.....+.|+-.=+ +|+++-..
T Consensus 198 ~~--------~v~~G~~~p~~~---~~-~~~W~---~ii~~Y~~iAs~lPVw~Ll-qprdyl~~ 245 (376)
T PF02554_consen 198 LL--------AVWLGMYFPISL---LS-VTTWI---IIIFIYYFIASVLPVWKLL-QPRDYLNG 245 (376)
T ss_pred HH--------HHHhhhhccccc---Cc-HHHHH---HHHHHHHHHHHHhhHHHHh-CchHHHHH
Confidence 22 222232111111 01 11121 3666666688889988744 47776443
No 76
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=96.92 E-value=0.62 Score=47.77 Aligned_cols=278 Identities=12% Similarity=0.055 Sum_probs=132.5
Q ss_pred ccHHHHHHHhhchhhHH---HHHHHHHHHHHHHHHHHH------HHhHhhhhhh--hcc------CCchh--hhHhHHHH
Q 012371 113 IQWFEVLDGLLGKHWRN---IGLFFNCTFLLFGSVIQL------IACASNIYYI--NDN------LDKRT--WTYIFGAC 173 (465)
Q Consensus 113 ~~y~~l~~~~~G~~~~~---~~~~~~~~~~~g~~~~y~------i~~~~~l~~~--~~~------~~~~~--~~ii~~~v 173 (465)
.+|+.+.+..||-+|.. +...++-..-+|+-+ |+ .+.......+ ..+ .+... +-+++-++
T Consensus 103 IpFpv~~RaSFGi~Ga~~p~l~R~i~A~~WyGvqt-y~Gg~av~llL~~i~~~~~~~~~~~~~lg~tt~~~i~F~ifW~l 181 (497)
T COG1953 103 IPFPVLSRASFGIYGANFPALIRAIVAIVWYGVQT-YAGGLAVNLLLGSIFPSLLIPNTLSPLLGLTTLELICFFIFWVL 181 (497)
T ss_pred CCchHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHhccccccCCccccccCCcHHHHHHHHHHHHH
Confidence 49999999999877743 344444444444431 11 0011111110 000 11122 22333344
Q ss_pred HhhhhccCCCcchhHHHHHHHHHHHHHHHHHHHhhhh--cccC--CCcc---CCCCchhhHhHhHHHHHHHHh--cCccc
Q 012371 174 CATTVFIPSFHNYRIWSFLGLIMTSFTAWYLTIASLV--HGQV--EGVK---HSGPTKMVLYFTGATNILYTF--GGHAV 244 (465)
Q Consensus 174 ~~pl~~l~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~--~g~~--~~~~---~~~~~~~~~~~~a~~~~~faf--~~~~~ 244 (465)
.++..+. -+++++++-..+...+.+....+.+-.+. +|.. .+.+ .+.+.....+..++. ...++ ...-|
T Consensus 182 ~~l~~~~-g~~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~g~~~~~~~p~~~~~~~~~~w~~~~~~~-~~v~~~Atl~lN 259 (497)
T COG1953 182 QLLVLFK-GMESIRKFETWAGPLVYIAMLGLAIWALVKAGGSSILGELPAGTVSGSNSSWAFLAGIA-AWVGFWATLALN 259 (497)
T ss_pred HHHHHhc-CHHHHHHHHHHhchHHHHHHHHHHHHHHHhcCCcCccccCCCCCCCcchhHHHHHHHHH-HHHHHHHHHhcC
Confidence 4444443 46777776666655553332223232222 2211 1111 112222233333332 23333 22457
Q ss_pred hHhHhhhccCCccchHH----HHHHHHHHHHHHHhHHHHHHHhhccccccccccccccCcccHHH-HHHHHHHHHHHHH-
Q 012371 245 TVEIMHAMWKPQKFKSI----YLLATLYVLTLTLPSASAVYWAFGDMLLTHSNAFSLLPRTGFRD-TAVILMLIHQFIT- 318 (465)
Q Consensus 245 v~~i~~~mk~p~~~~~~----~~~s~~~~~~~y~~~g~~gy~~fG~~~~~~~~il~~l~~~~~~~-~~~~~~~i~~~~s- 318 (465)
+|..-+.-|+|+.-..- +-..+.+..++-+.++..++..||++.-++.+++..+++..... ++-+.+++..+..
T Consensus 260 ~~DFsRfa~s~~~~~~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P~di~~~~~~~~~~~fl~~l~~~iati~~N 339 (497)
T COG1953 260 IPDFTRFAKSQKAQIWGQLVGLPVNFALFSLIGVVVTSASYILYGETIWDPLDIVARFLSGFYAAFLAGLTFAVATISTN 339 (497)
T ss_pred CchhhcccCChhhhhhccchhhhHHHHHHHHHHhhHHHHHHHhhCcccCCHHHHHHHhccchHHHHHHHHHHHHHHHhhh
Confidence 88888888877653322 22223333333455567789999999766678888887655543 4444444433333
Q ss_pred HHhhhccHHHHHHHHhcCCCCcchhhH--HH-hhhhHHHHHHHHHHhcCCchhhHHhhhhhhhhhhHHhhhhHHHHHHhc
Q 012371 319 FGFACTPLYFVWEKFIGVHNTKSTFKR--AL-ARLPVVIPIWFLAIIFPFFGPINSTVGSLLVSFTVYIIPALAHMITFA 395 (465)
Q Consensus 319 ~pl~~~p~~~~~~~~~~~~~~~~~~~~--~~-~r~~~~~~~~~~A~~vp~~~~i~~lvGs~~~~~l~~ilP~l~~l~~~~ 395 (465)
..-..+|.-..+..++. +.-+ .+| ++ .-+.+.+.++-+=..-..+..+++..|++.+++..-++- =|+..||
T Consensus 340 i~aN~vsp~~D~s~l~P--k~in-~krg~liaA~ial~~~PW~l~~s~s~f~~~L~~yg~~LgpiaGVmia--Dyflirk 414 (497)
T COG1953 340 IAANIVSPGYDLSALFP--KYIN-IKRGGLIAAIIALLICPWNLLESSSSFTTFLGSYGVFLGPIAGVMIA--DYFLVRK 414 (497)
T ss_pred HHhccCChHHHHHHhcc--cccc-hhhhHHHHHHHHHHHcChHHHcCccHHHHHHHHHHHHHHHHHHHHHH--HHHhhhc
Confidence 23333444444445553 2111 222 22 223334444444334445667777777777776666532 2445555
Q ss_pred chh
Q 012371 396 PAA 398 (465)
Q Consensus 396 ~~~ 398 (465)
++.
T Consensus 415 ~~~ 417 (497)
T COG1953 415 GRL 417 (497)
T ss_pred Ccc
Confidence 553
No 77
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=96.31 E-value=1.3 Score=45.15 Aligned_cols=76 Identities=12% Similarity=0.034 Sum_probs=50.4
Q ss_pred CchhHHHHHHHhhhhhhhhchhHHHHHh-hc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccH
Q 012371 39 GSVYDAWFSCASNQVAQVLLTLPYSFSQ-LG--LLSGILLQLFYGLMGSWTAYLISILYVEYRTRKEREKVDFRNHVIQW 115 (465)
Q Consensus 39 ~s~~~a~~~l~~~~iG~GiL~lP~a~~~-~G--~~~g~i~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y 115 (465)
...+...+.+..-..|+|-|=.|-..-+ +| |+++.+.+++.+..--.-+.+-+ .+. + .++
T Consensus 3 k~~l~ig~~LFamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP~Lgvia~-------~~~---~-------~~~ 65 (427)
T PF05525_consen 3 KDILIIGFALFAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLPLLGVIAV-------AKS---G-------GGI 65 (427)
T ss_pred chhhhHHHHHHHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH-------hhc---C-------CCH
Confidence 3456677889999999999999977655 55 88888888877765443332211 111 0 178
Q ss_pred HHHHHHhhchhhHHHHH
Q 012371 116 FEVLDGLLGKHWRNIGL 132 (465)
Q Consensus 116 ~~l~~~~~G~~~~~~~~ 132 (465)
+++++++ ||+...+..
T Consensus 66 ~~l~~~v-~~~f~~if~ 81 (427)
T PF05525_consen 66 EDLASRV-GPKFALIFT 81 (427)
T ss_pred HHHhccc-CcHHHHHHH
Confidence 8898887 566655444
No 78
>PRK15015 carbon starvation protein A; Provisional
Probab=96.17 E-value=0.33 Score=51.20 Aligned_cols=106 Identities=12% Similarity=0.052 Sum_probs=75.4
Q ss_pred CCchhHHHHHHHhhhhhhhhchhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccHHH
Q 012371 38 GGSVYDAWFSCASNQVAQVLLTLPYSFSQLGLLSGILLQLFYGLMGSWTAYLISILYVEYRTRKEREKVDFRNHVIQWFE 117 (465)
Q Consensus 38 ~~s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~ 117 (465)
+++.+-.+-|=..++-|+|.+-=|.--.|.||+|+.+.+++-+++.----...... .+. ||+-+|.+|
T Consensus 82 Pt~k~VLfGHHFasIAGAGPivGPvlAa~~GwlP~~LWIl~G~vf~GaVhD~~~L~---~S~---------R~~GrSig~ 149 (701)
T PRK15015 82 PTDKKVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLF---VST---------RRDGRSLGE 149 (701)
T ss_pred cCCccchhHHHHHHHhccCccHHHHHHHHHcchHHHHHHHHcceeechhhhhhhee---eee---------cCCCccHHH
Confidence 44556677788999999999999999999999999888765444322111111100 111 222349999
Q ss_pred HHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q 012371 118 VLDGLLGKHWRNIGLFFNCTFLLFGSVIQLIACASNIY 155 (465)
Q Consensus 118 l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~ 155 (465)
++++..|++++.+..+.+++.+.....++...+.+.+.
T Consensus 150 ia~~~iG~~~~~lfli~i~~iliiviAvfalvvv~al~ 187 (701)
T PRK15015 150 LVKEEMGPTAGVIALVACFMIMVIILAVLAMIVVKALT 187 (701)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999998888888777777777766666653
No 79
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=96.12 E-value=1.7 Score=43.45 Aligned_cols=77 Identities=8% Similarity=0.105 Sum_probs=52.1
Q ss_pred cHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCchhhhHhHHHHHhhhhc--cCCCcchhHHHH
Q 012371 114 QWFEVLDGLLGKHWRNIGLFFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVF--IPSFHNYRIWSF 191 (465)
Q Consensus 114 ~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~ii~~~v~~pl~~--l~~l~~l~~~s~ 191 (465)
+..|..++-+||+..+...+...+.......+.+.-.+..++.+. ..+...+.++..+..+.+.+ .++.+.+.....
T Consensus 43 ~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~al~ll~-g~~~~~~~~~~~~~~~~ll~~~~~~y~~~E~~~~ 121 (358)
T PF01566_consen 43 GLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIAIALNLLF-GIPLWIWVLLVAVIAILLLWLSSGGYRRLERILK 121 (358)
T ss_pred ChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 777888888899998888777777677666666666666666554 45666676666655555545 566666665544
No 80
>PRK10484 putative transporter; Provisional
Probab=95.59 E-value=3.8 Score=43.29 Aligned_cols=146 Identities=9% Similarity=-0.053 Sum_probs=69.5
Q ss_pred CCchhHHHHHHHhhhhhhhh-chhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccHH
Q 012371 38 GGSVYDAWFSCASNQVAQVL-LTLPYSFSQLGLLSGILLQLFYGLMGSWTAYLISILYVEYRTRKEREKVDFRNHVIQWF 116 (465)
Q Consensus 38 ~~s~~~a~~~l~~~~iG~Gi-L~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~ 116 (465)
+.+.+-..+.+..+.++++. ++.|-...+.|+.. .......++.......++.+ ++++ .+..|..
T Consensus 39 ~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~~G~~~-~~~~~~~~~~~~~~~~~~~p---~~~r----------~~~~T~~ 104 (523)
T PRK10484 39 SLTGPVIAGSLLLTNLSTEQLVGLNGQAYASGMSV-MAWEVTAAIALIILALIFLP---RYLK----------SGITTIP 104 (523)
T ss_pred CCchHHHHHHHHHHHhhHHHHhcchHHHHHhCHHH-HHHHHHHHHHHHHHHHHHHH---HHHh----------cCCccHH
Confidence 44566677777777666654 78887776778643 11111111111112222221 1221 1345899
Q ss_pred HHHHHhhchhhHHHHHHHHHHHHHHHHHHHHH-HhHhhhhhhh-----ccCCchhhh----HhHHHHHhhhhccCCCcch
Q 012371 117 EVLDGLLGKHWRNIGLFFNCTFLLFGSVIQLI-ACASNIYYIN-----DNLDKRTWT----YIFGACCATTVFIPSFHNY 186 (465)
Q Consensus 117 ~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i-~~~~~l~~~~-----~~~~~~~~~----ii~~~v~~pl~~l~~l~~l 186 (465)
|.-++-||++.+.+......+........... ..+..++.+. ...+..... ++.+++....+...-+++.
T Consensus 105 e~l~~Ryg~~~~~~~~~~~~i~~~~~~~~~~l~~g~~~l~~i~~~~~~~gi~~~~~~~~~~~~~~~i~~~Yt~~GGl~aV 184 (523)
T PRK10484 105 DFLEERYDKTTRRIVSILFLIGYVVSFLPIVLYSGALALNSLFHVSELLGISYGAAIWLLVWLIGIIGAIYAVFGGLKAV 184 (523)
T ss_pred HHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence 99999999888776555433332222222111 1122222211 122222211 1123344555666667777
Q ss_pred hHHHHHHHHHH
Q 012371 187 RIWSFLGLIMT 197 (465)
Q Consensus 187 ~~~s~~~~~~~ 197 (465)
.+...+-.+..
T Consensus 185 ~~TD~iQ~vim 195 (523)
T PRK10484 185 AVSDTINGIGL 195 (523)
T ss_pred HHHHHHHHHHH
Confidence 77666665443
No 81
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=95.20 E-value=4.2 Score=41.40 Aligned_cols=67 Identities=16% Similarity=0.119 Sum_probs=46.6
Q ss_pred HHHHHhcCCCCcchhhHHHhhhhHHHHHHHHHHhcCCchhhHHhhhhhhhhhhHHhhhhHHHHHHhcc
Q 012371 329 VWEKFIGVHNTKSTFKRALARLPVVIPIWFLAIIFPFFGPINSTVGSLLVSFTVYIIPALAHMITFAP 396 (465)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~A~~vp~~~~i~~lvGs~~~~~l~~ilP~l~~l~~~~~ 396 (465)
.++...+.+. +...+|+..|....+.+..+.+.+-+...++.+.+.+.+..+-+..+++.++...|+
T Consensus 312 ~~~g~~~~~~-~~~~r~~i~~~~~~ip~~~i~i~~g~~~~lL~~sqvl~~~~lP~~~~~ll~~~~~k~ 378 (416)
T COG1914 312 VMEGFLNWRI-PLWRRRLITRTFAIVPGLAIIILFGDPARLLVFSQVLLSVILPFALIPLLLLTSDKK 378 (416)
T ss_pred HHHhhhcccC-chHhhHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcChh
Confidence 4444443222 235567888877777666666555599999999999998888888887777766554
No 82
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=94.63 E-value=1.5 Score=45.37 Aligned_cols=105 Identities=13% Similarity=0.085 Sum_probs=74.2
Q ss_pred CCchhHHHHHHHhhhhhhhhchhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccHHH
Q 012371 38 GGSVYDAWFSCASNQVAQVLLTLPYSFSQLGLLSGILLQLFYGLMGSWTAYLISILYVEYRTRKEREKVDFRNHVIQWFE 117 (465)
Q Consensus 38 ~~s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~ 117 (465)
++|.+-.+-|=..++-|+|.+-=|.--+|.||.+|.+.+++-+.+.----..++-- .+.|+ +| +|.+|
T Consensus 51 Ptnk~vlfGhHFaaIAGAGPivGPvlAAq~G~Lp~~LWIl~G~VfaGaVhD~~~L~---~SvR~--~G-------~Si~~ 118 (575)
T COG1966 51 PTNKWVLFGHHFASIAGAGPIVGPALAAQYGWLPAFLWILLGCVFAGAVHDYFSLM---LSVRH--GG-------KSIGE 118 (575)
T ss_pred cCCchhhhHHHHHHHhccCcchhHHHHHHhcCcHHHHHHHHhhhhhhhhhhhhhee---eeecc--CC-------ccHHH
Confidence 46667788888999999999999999999999999888766554432211122110 11221 22 49999
Q ss_pred HHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q 012371 118 VLDGLLGKHWRNIGLFFNCTFLLFGSVIQLIACASNI 154 (465)
Q Consensus 118 l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l 154 (465)
++++.+|+..+.+..+...+....+..++.....+.+
T Consensus 119 ia~~~lG~~a~~~~~~~~l~iliiv~Avfa~vv~~~l 155 (575)
T COG1966 119 IAGKYLGRTAKVFFLLLALILLILVGAVFAAVIAKLL 155 (575)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888777766666666655555444
No 83
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=93.77 E-value=8.8 Score=39.04 Aligned_cols=66 Identities=20% Similarity=0.164 Sum_probs=44.6
Q ss_pred cccCCchhHHHHHHHhhhhhhhhc-hhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012371 35 FWHGGSVYDAWFSCASNQVAQVLL-TLPYSFSQLGLLSGILLQLFYGLMGSWTAYLISILYVEYRTRK 101 (465)
Q Consensus 35 ~~~~~s~~~a~~~l~~~~iG~GiL-~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~ll~~~~~~~~~~~ 101 (465)
.+++.|.+|++..-+.+.+|+|-+ +...|..-.|.. .++.+-+.+++..-+-+.=+-....+|+++
T Consensus 15 ~~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~GGPG-AiFWMWi~a~~Gmatk~~E~~La~~yR~~~ 81 (416)
T PF01235_consen 15 EEGGISPFQALCTALAGTVGTGNIAGVATAIAIGGPG-AIFWMWISALLGMATKYAEVTLAQKYREKD 81 (416)
T ss_pred CCCCcChHHHHHHHHHhccCcchHHHHHHHHHhhchh-HHHHHHHHHHHHHHHHHHHHHHHHHheEEC
Confidence 344688999999999999999974 599999888843 466666666665544443222234455443
No 84
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=93.59 E-value=9.7 Score=38.97 Aligned_cols=281 Identities=10% Similarity=-0.011 Sum_probs=136.6
Q ss_pred ccHHHHH-HHhhchhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCchhhhHhHHHHHhhhhccCCCcchhHHHH
Q 012371 113 IQWFEVL-DGLLGKHWRNIGLFFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSF 191 (465)
Q Consensus 113 ~~y~~l~-~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~ii~~~v~~pl~~l~~l~~l~~~s~ 191 (465)
.++.|.. ++..-+..|++..+.-.+..+.-.++++.-.+..+..+.+ .+...-.++.++++.....+.-++...|..+
T Consensus 104 yT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~g-v~~~vgv~ig~ilm~~Yvv~GGM~atTW~Qi 182 (529)
T COG4147 104 YTFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLLG-VPYHVGVVIGGILMMVYVVLGGMKATTWVQI 182 (529)
T ss_pred cchHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhC-CCceeehhhHhHHHHHHHHhcchhhhhHHHH
Confidence 3888875 5544566677766554444444445566555655555443 3445555666677777778888888888887
Q ss_pred HHHHHHHHHHHHHHH-hhhh-cccCC-------Ccc----C---CCC-chhhHhHhHHHHHHHHhcCccchHhHhh---h
Q 012371 192 LGLIMTSFTAWYLTI-ASLV-HGQVE-------GVK----H---SGP-TKMVLYFTGATNILYTFGGHAVTVEIMH---A 251 (465)
Q Consensus 192 ~~~~~~~~~~~~~~~-~~~~-~g~~~-------~~~----~---~~~-~~~~~~~~a~~~~~faf~~~~~v~~i~~---~ 251 (465)
+--+..+....+..+ .... .+.+. ..+ . .+| ..-.+-++.++...--..|..-+|-+.- +
T Consensus 183 ~qavlLi~a~~i~ai~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pGl~~~~~i~~isl~~aLm~GTAgLPHil~RFfT 262 (529)
T COG4147 183 IQAVLLIVAALIMAIMIMWKLGGNPNPLFAEAVTVHPKDDGSDIMEPGLLYKDPIDFISLGFALMVGTAGLPHILMRFFT 262 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHhhcCcccCcccccCCCCcccCHHHHHHHHHHHHHccCCCCeEEEEEEe
Confidence 666544332222211 1111 12111 000 0 011 0112223333322212224444444321 1
Q ss_pred ccCCccchHHHHHHHHHHHHHHHhHHHHHHHhh---cccccc---------------ccccccc-----------cC-cc
Q 012371 252 MWKPQKFKSIYLLATLYVLTLTLPSASAVYWAF---GDMLLT---------------HSNAFSL-----------LP-RT 301 (465)
Q Consensus 252 mk~p~~~~~~~~~s~~~~~~~y~~~g~~gy~~f---G~~~~~---------------~~~il~~-----------l~-~~ 301 (465)
..+-++-|+++.++...+..+|+..-+.|+.+= +++... .+-+... +. .+
T Consensus 263 vp~~k~AR~Sv~wA~~fIg~fYi~~~~ig~~A~~~v~t~~~~~p~w~~~w~~~~D~~~~gi~~~~n~a~vlaa~~i~~g~ 342 (529)
T COG4147 263 VPDAKEARKSVFWATGFIGIFYILTPIIGAGARLLVGTNPVGKPAWAAKWIKTGDANGDGIGGWTNMAAVLAAPAIGGGP 342 (529)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcchhhcccccccccccccccccchHHHhhhHHhcCCc
Confidence 222355678888999999999987766665542 322110 1111111 11 13
Q ss_pred cHH---HHHHHHHHHHHHHHHHhhhcc--HHHHHHHHhcCC--CCcchhhHHHhhhhHHHHHHHHHHhcCCchhhHHhhh
Q 012371 302 GFR---DTAVILMLIHQFITFGFACTP--LYFVWEKFIGVH--NTKSTFKRALARLPVVIPIWFLAIIFPFFGPINSTVG 374 (465)
Q Consensus 302 ~~~---~~~~~~~~i~~~~s~pl~~~p--~~~~~~~~~~~~--~~~~~~~~~~~r~~~~~~~~~~A~~vp~~~~i~~lvG 374 (465)
+.. ...-+...++......+.... ..|...+.++.+ +++.....-+...+..++...+++.-|. .+..++|
T Consensus 343 ~v~g~vsAga~AtaLstaaGL~l~iasavsHDiY~~vik~~ase~~~v~vaRi~~v~~~vva~~lgi~~~g--nVaflVa 420 (529)
T COG4147 343 WVLGFVSAGAFATALSTAAGLLLVIASAVSHDLYAMVIKKGATEKKEVRVARIAVVILGVVAILLGILPPG--NVAFLVA 420 (529)
T ss_pred eehhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhCCCCCccceehhHHHHHHHHHHHHHHheecCCc--cHHHHHH
Confidence 321 222233334443333333321 234555555422 2221111122223344455667777776 6777777
Q ss_pred hhhhhhhHHhhhhHHHHHHhcch
Q 012371 375 SLLVSFTVYIIPALAHMITFAPA 397 (465)
Q Consensus 375 s~~~~~l~~ilP~l~~l~~~~~~ 397 (465)
--++..-.--+|.+.+= +++|+
T Consensus 421 ~AF~lAaSa~fPvivlg-lfWKr 442 (529)
T COG4147 421 LAFALAASANFPVIVLG-LFWKR 442 (529)
T ss_pred HHHHHHHHcccchhhHH-HHHhh
Confidence 77777777788987753 34433
No 85
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=92.28 E-value=2 Score=43.24 Aligned_cols=77 Identities=14% Similarity=0.071 Sum_probs=60.5
Q ss_pred cHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCchhhhHhHHHHHhhhhccCCCcchhHHHH
Q 012371 114 QWFEVLDGLLGKHWRNIGLFFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSF 191 (465)
Q Consensus 114 ~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~ii~~~v~~pl~~l~~l~~l~~~s~ 191 (465)
-..+++++.||+.|+.+..+.+.+.|++++++.....+|..+.+.+..+.+.|.++..++...++.. .++++-..+.
T Consensus 256 ~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~k~~y~~~v~~~~l~s~~ia~~-Gl~~Ii~~~~ 332 (378)
T TIGR00796 256 ILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLVPKLSYKTWVIVFTLFSFIVANL-GLTQIISISI 332 (378)
T ss_pred HHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh-CHHHHHHHHH
Confidence 5778899999999999999999999999999999999999988866667777777766655555543 3455444443
No 86
>PRK00701 manganese transport protein MntH; Reviewed
Probab=91.86 E-value=17 Score=37.43 Aligned_cols=76 Identities=5% Similarity=-0.107 Sum_probs=42.8
Q ss_pred cHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCchhhhHhHHHHHhhh--hccCCCcchhHHH
Q 012371 114 QWFEVLDGLLGKHWRNIGLFFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATT--VFIPSFHNYRIWS 190 (465)
Q Consensus 114 ~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~ii~~~v~~pl--~~l~~l~~l~~~s 190 (465)
+..|+.++-|||+..++..+...+-..+...+..+-.+..++.+. ..+..++.++.++..+.+ .+.++.+.+..+.
T Consensus 95 ~l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~e~~G~a~al~ll~-gip~~~~v~i~~~~~~~~l~l~~~~y~~~E~i~ 172 (439)
T PRK00701 95 DLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAIALKLLF-GIPLLQGALITALDTFLILMLQRRGFRPLEAII 172 (439)
T ss_pred CHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHHHHhcCccHHHHHH
Confidence 788999888999988877666655566666665555555554432 233333333333222211 2344466666554
No 87
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=90.00 E-value=24 Score=35.78 Aligned_cols=75 Identities=11% Similarity=0.002 Sum_probs=41.2
Q ss_pred cHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCchhhhHh--HHHHHhhhhccCCCcchhHH
Q 012371 114 QWFEVLDGLLGKHWRNIGLFFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYI--FGACCATTVFIPSFHNYRIW 189 (465)
Q Consensus 114 ~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~ii--~~~v~~pl~~l~~l~~l~~~ 189 (465)
+..|+.++-++|+.++...+...+...+...+...-.+..++.+.+ .+...+.++ ...+.+.+.+.+..+.+..+
T Consensus 65 ~l~~~~r~~~~~~~~~~~~~~~~l~ii~~~~~e~~G~a~al~ll~g-~p~~~~v~~~~~~~~~~~~~~~~~yr~~E~~ 141 (390)
T TIGR01197 65 DLAEVCREHYPKVPRITLWILAELAIIATDMAEVIGTAIALNLLSH-IPLWGGVLITIVDVFLFLFLDKPGLRILEAF 141 (390)
T ss_pred CHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CcHHHHHHHHHHHHHHHHHHHhCCceeHHHH
Confidence 7889999999988777665554444455555555444444444432 333333333 22233334445566666655
No 88
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=89.60 E-value=23 Score=35.17 Aligned_cols=337 Identities=10% Similarity=0.027 Sum_probs=160.9
Q ss_pred chhHHHHHHHhhhhhhhh-chhHHHHHhhchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhcccccccccccHHH
Q 012371 40 SVYDAWFSCASNQVAQVL-LTLPYSFSQLGLLSGILLQLFYGLMG-SWTAYLISILYVEYRTRKEREKVDFRNHVIQWFE 117 (465)
Q Consensus 40 s~~~a~~~l~~~~iG~Gi-L~lP~a~~~~G~~~g~i~l~~~~~~~-~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~ 117 (465)
+.+-..+....+.+|+.- ++=|-+-...|+. .+++..+-.-+ +.+.-.+.+=.....++ .+..+..|
T Consensus 42 gg~VlAmt~~aTYisaSSFigGpgaayk~Glg--wvlLa~iqvp~~~l~lgvlgkk~~~~ar~---------~nAltI~D 110 (473)
T COG4145 42 GGIVLAMTFTATYISASSFIGGPGAAYKYGLG--WVLLAMIQVPTVWLALGVLGKKFAILARE---------YNALTIND 110 (473)
T ss_pred cceehhhHHHHHHHHHhhhcCCCcHHHHhchH--HHHHHHHHHHHHHHHHHHhhhHHHHHHHH---------hCCeeHHH
Confidence 344555666667776643 6778887777743 44444443333 33333333221111111 11237888
Q ss_pred HHHHhh-chhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCchhhhHhHHHHHhhhhccCCCcchhHHHHHHHHH
Q 012371 118 VLDGLL-GKHWRNIGLFFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLIM 196 (465)
Q Consensus 118 l~~~~~-G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~ii~~~v~~pl~~l~~l~~l~~~s~~~~~~ 196 (465)
+-++-| ++.-.|+..+...+...+..+++.+-.+..++... ..+...-.++++..+..-..+.-+|.....-.+--..
T Consensus 111 ~l~~RY~s~fl~~las~~Lifff~~~m~~qfiGgarLlE~~~-gidY~tgL~ifa~~V~iYt~fGGFRAvvltD~IQG~v 189 (473)
T COG4145 111 LLFARYQSRFLVWLASLSLIFFFVGAMTVQFIGGARLLETAL-GIDYTTGLLIFAVSVAIYTAFGGFRAVVLTDTIQGLV 189 (473)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-CCCchhhHHHHHHHHHHHHhhcceeeeehHHHHHHHH
Confidence 876665 66778888888888999999888888777776543 3455556667777676666666655544433322222
Q ss_pred HHHHHHHHHHhhhhcc--c------CCCccC-----CCCch--hhHhHhHHH-HHHHHhcCccchHhHhhh--ccCCccc
Q 012371 197 TSFTAWYLTIASLVHG--Q------VEGVKH-----SGPTK--MVLYFTGAT-NILYTFGGHAVTVEIMHA--MWKPQKF 258 (465)
Q Consensus 197 ~~~~~~~~~~~~~~~g--~------~~~~~~-----~~~~~--~~~~~~a~~-~~~faf~~~~~v~~i~~~--mk~p~~~ 258 (465)
++...+.+.+..++.+ . ..+.|+ .+..+ -+.+..++- .++++--|++-. ..+- -||.+-.
T Consensus 190 mligtv~Lf~~~i~~~GG~~~av~tl~~iDp~lv~P~~~~~~l~~~Fm~Sfwilv~~gvlglP~t--~vr~ia~kDskai 267 (473)
T COG4145 190 MLIGTVVLFVGVIYAGGGLSNAVETLTTIDPGLVTPQGADDILDPPFMASFWILVCFGVLGLPHT--AVRCIAFKDSKAI 267 (473)
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHhCCccccCCCCCcccccchHHHHHHHHHHHHHhcCcHH--HHHHHhccchhHH
Confidence 2222222222222211 0 111221 11111 122222222 122222233222 2222 3444444
Q ss_pred hHHHHHHHHHHHHH---HHhHHHHHHHhhccccccccccccc-----cCccc--HHHHHHHHHHHHHHHHHHhhh--ccH
Q 012371 259 KSIYLLATLYVLTL---TLPSASAVYWAFGDMLLTHSNAFSL-----LPRTG--FRDTAVILMLIHQFITFGFAC--TPL 326 (465)
Q Consensus 259 ~~~~~~s~~~~~~~---y~~~g~~gy~~fG~~~~~~~~il~~-----l~~~~--~~~~~~~~~~i~~~~s~pl~~--~p~ 326 (465)
.+...++..++.++ .-++|.+|...+.|-++ .+-+.-+ +|+-. ....+-+...++-+=|-.++. .-.
T Consensus 268 h~gmiigt~vi~il~~gmhl~G~~graViPdlt~-~D~Vip~lalkvlpp~~agifl~apmaAiMSTIds~L~~~sstli 346 (473)
T COG4145 268 HRGMIIGTIVIAILMLGMHLAGALGRAVIPDLTV-VDLVIPTLALKVLPPFAAGIFLAAPMAAIMSTINSQLLQSSSTLI 346 (473)
T ss_pred hcCcchHHHHHHHHHHHHHHhhhhhhhhcCCCCc-cchhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444433333 34668888888877664 2323222 33211 112222333344444434433 123
Q ss_pred HHHHHHHhcCCCCcchhhHHH-hhhhHHH-HHHHHHHhcCCchhhHHhhhhhhhhhhHHhhhhHHHHH
Q 012371 327 YFVWEKFIGVHNTKSTFKRAL-ARLPVVI-PIWFLAIIFPFFGPINSTVGSLLVSFTVYIIPALAHMI 392 (465)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~-~r~~~~~-~~~~~A~~vp~~~~i~~lvGs~~~~~l~~ilP~l~~l~ 392 (465)
++...+...+.+++.+.+|+. +.+.+.. +..+.|..=|++-..+++. |+++--..|..|-++-+.
T Consensus 347 KdLy~~~~~~~~~E~ki~~is~~~t~i~~~l~~i~al~Pp~~iiwlnlf-Afggle~~Fl~plvlgLY 413 (473)
T COG4145 347 KDLYLNVRDKLKNERKIKRISMIATLIFGALLLIAALNPPEMIIWLNLF-AFGGLEAVFLWPLVLGLY 413 (473)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhCCcceeeeeehh-hhcchhhHHHHHHHHHHH
Confidence 444433321112223444533 3333333 4444444455766666665 566666677777665444
No 89
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=88.47 E-value=32 Score=35.28 Aligned_cols=75 Identities=9% Similarity=-0.078 Sum_probs=48.1
Q ss_pred chhHHHHHHHhhhhhhhhchhHHHHHh-hc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccHH
Q 012371 40 SVYDAWFSCASNQVAQVLLTLPYSFSQ-LG--LLSGILLQLFYGLMGSWTAYLISILYVEYRTRKEREKVDFRNHVIQWF 116 (465)
Q Consensus 40 s~~~a~~~l~~~~iG~GiL~lP~a~~~-~G--~~~g~i~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~ 116 (465)
..+...+.+..-..|+|-|=.|-..-+ +| |+++.+.+++.+..--.-+.+-+ .+. + .+++
T Consensus 9 ~~l~iG~~LFamFFGAGNLIFPp~LG~~aG~~~~~a~~GF~iT~VglPlLgiiav-------a~~--~--------g~~~ 71 (439)
T PRK15433 9 DIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLPVLTVVAL-------AKV--G--------GGVD 71 (439)
T ss_pred HHHHHHHHHHHHHhcCcchhccHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH-------hhc--C--------CCHH
Confidence 456778889999999999999977655 55 77777777666653322222111 111 0 1788
Q ss_pred HHHHHhhchhhHHHHH
Q 012371 117 EVLDGLLGKHWRNIGL 132 (465)
Q Consensus 117 ~l~~~~~G~~~~~~~~ 132 (465)
|++++. ||+...+..
T Consensus 72 ~l~~rv-~~~f~~~f~ 86 (439)
T PRK15433 72 SLSTPI-GKVAGVLLA 86 (439)
T ss_pred HHhhhc-chHHHHHHH
Confidence 898887 566555443
No 90
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=88.26 E-value=32 Score=35.08 Aligned_cols=32 Identities=19% Similarity=0.162 Sum_probs=25.1
Q ss_pred cCCchhHHHHHHHhhhhhhhh-chhHHHHHhhc
Q 012371 37 HGGSVYDAWFSCASNQVAQVL-LTLPYSFSQLG 68 (465)
Q Consensus 37 ~~~s~~~a~~~l~~~~iG~Gi-L~lP~a~~~~G 68 (465)
+-.|..+-.+....+-+|.|- --.||...+-|
T Consensus 7 ~w~SrlGFILAa~GsAVGLGNiWrFPy~~~~nG 39 (439)
T COG0733 7 QWSSRLGFILAAAGSAVGLGNIWRFPYMAGENG 39 (439)
T ss_pred chhhHHHHHHHHHHHHhcccccccCCeEeeecC
Confidence 345667788888889999885 66999888866
No 91
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=87.00 E-value=24 Score=37.89 Aligned_cols=49 Identities=10% Similarity=0.006 Sum_probs=29.8
Q ss_pred hHHHHHHHHhcCccchHhHhhhccCCcc-chHHHHHHHHHHHHHHHhHHH
Q 012371 230 TGATNILYTFGGHAVTVEIMHAMWKPQK-FKSIYLLATLYVLTLTLPSAS 278 (465)
Q Consensus 230 ~a~~~~~faf~~~~~v~~i~~~mk~p~~-~~~~~~~s~~~~~~~y~~~g~ 278 (465)
+.|+++.=+-.|.-.=-..-.|+|+|+| .+|-...+.++.+++|+++.+
T Consensus 298 ~~FgV~F~g~tGimAGAnMSgELk~PSkSIP~GTl~ava~Tf~~Yvl~~f 347 (945)
T KOG1288|consen 298 STFGVFFPGTTGIMAGANMSGELKAPSKSIPKGTLSAVAFTFFVYVLVIF 347 (945)
T ss_pred hhheeeeccchhhhcCCCcCccccCccccCCccchHHHHHHHHHHHHHHH
Confidence 3334333333333333445679999977 577666777778888876544
No 92
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=86.26 E-value=5.5 Score=40.66 Aligned_cols=77 Identities=13% Similarity=0.114 Sum_probs=63.0
Q ss_pred cHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCchhhhHhHHHHHhhhhccCCCcchhHHHH
Q 012371 114 QWFEVLDGLLGKHWRNIGLFFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSF 191 (465)
Q Consensus 114 ~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~ii~~~v~~pl~~l~~l~~l~~~s~ 191 (465)
=..+++++.+|+.|..+..+.+.+-|+.++++-....+|..+.+.+..+.+.|.++.+++...++.. .++.+-..|.
T Consensus 262 lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~kisY~~~v~i~~i~S~~ian~-Gl~~Ii~~s~ 338 (427)
T PF05525_consen 262 LLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSELFPKISYKVWVIIFTIFSFIIANL-GLDQIIKISV 338 (427)
T ss_pred HHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHh-CHHHHHHHHH
Confidence 4667889999999999999999999999999999999999998877788888888888777776665 2444444443
No 93
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=83.44 E-value=3.8 Score=42.90 Aligned_cols=214 Identities=13% Similarity=0.069 Sum_probs=111.3
Q ss_pred HHHHHHHhhhhhhhhchhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccHHHHHHHh
Q 012371 43 DAWFSCASNQVAQVLLTLPYSFSQLGLLSGILLQLFYGLMGSWTAYLISILYVEYRTRKEREKVDFRNHVIQWFEVLDGL 122 (465)
Q Consensus 43 ~a~~~l~~~~iG~GiL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~ 122 (465)
+...|+..-|+ .|=+++-..|+|+..|++++.....++..|..=- +. ..+|...++- . .|. +..+.
T Consensus 39 ~cmlni~gv~l---flrl~wivgqagi~~~~~ii~~~~~vt~it~lSa--~~--I~t~~~vk~G----g--~yf-lis~s 104 (643)
T KOG2083|consen 39 RCMLNIFGVIL---FLRLGWIVGQAGIGNSVLIIGLTTVVTLITVLSA--IA--IVTRGQVKSG----G--VYF-LISRS 104 (643)
T ss_pred hhhHHHHHHHH---hhhhhheeecchhhhhHHHHHHHHHHHHHHHHhH--he--eeecceeccC----c--EEE-EEEec
Confidence 55556554443 3668999999999999998888777776665422 11 1122111110 0 222 22345
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCchhh---hHhHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Q 012371 123 LGKHWRNIGLFFNCTFLLFGSVIQLIACASNIYYINDNLDKRTW---TYIFGACCATTVFIPSFHNYRIWSFLGLIMTSF 199 (465)
Q Consensus 123 ~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~---~ii~~~v~~pl~~l~~l~~l~~~s~~~~~~~~~ 199 (465)
+|+-.+..+.+...+.+.-.+..|.+-.++++.++....+.... ..+...+++-++. -..+|.+-+-.+..++
T Consensus 105 lg~efggsigiIy~f~~aVa~am~~vgfaEsv~~l~~~~s~~~i~gi~~vt~~ill~i~~----ag~~w~~k~q~~ll~i 180 (643)
T KOG2083|consen 105 LGPEFGGSIGIIYAFANAVATAMYVVGFAESVAHLFETESKEMIDGIGSVTVLILLAINV----AGVEWEAKLQIVLLLI 180 (643)
T ss_pred ccccccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhccHHHhcchhHHHHHHHHHhhh----ccchhHHHHHHHHHHH
Confidence 67776666666666666667778888889988877654332211 1111122222222 2333433333322111
Q ss_pred H--HH--HHHHhhhhc-----ccC---CC-ccCCCCchh---hHhHhHHHHHHHHhcCccchHhHhhhccCCcc-chHHH
Q 012371 200 T--AW--YLTIASLVH-----GQV---EG-VKHSGPTKM---VLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKSIY 262 (465)
Q Consensus 200 ~--~~--~~~~~~~~~-----g~~---~~-~~~~~~~~~---~~~~~a~~~~~faf~~~~~v~~i~~~mk~p~~-~~~~~ 262 (465)
. ++ .++...+.. |.. .+ ...+...++ ..+|+-|+++.=+..|.-.=..+-.+.|+|++ .++-.
T Consensus 181 l~iai~~f~~gs~~~~~~~~~g~~~~~a~~~~~n~~~~~~~~~tfF~vf~vfFpaatgilaG~nisGdL~~Pq~~IP~Ga 260 (643)
T KOG2083|consen 181 LLIAIADFLVGSFFSPNEFSSGFFGYRADIFVENLNPDIDPGYTFFSVFAVFFPAATGILAGANISGDLKDPQKAIPLGA 260 (643)
T ss_pred HHHHHHHhhhhhccChhhhcccccccchhhcccCCCCCcCCCCceEeeeeeecchhhhhhccccccCCCCCchhhcccch
Confidence 1 10 111111111 110 00 011111111 24565566666677676667778899999976 46666
Q ss_pred HHHHHHHHHHHH
Q 012371 263 LLATLYVLTLTL 274 (465)
Q Consensus 263 ~~s~~~~~~~y~ 274 (465)
..++.....+|.
T Consensus 261 L~Ai~vst~~yl 272 (643)
T KOG2083|consen 261 LLAIGVSTLLYL 272 (643)
T ss_pred hhhhhhhhhhhh
Confidence 677777777663
No 94
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=80.06 E-value=39 Score=34.20 Aligned_cols=79 Identities=16% Similarity=0.076 Sum_probs=63.5
Q ss_pred cHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCchhhhHhHHHHHhhhhccCCCcchhHHHHHH
Q 012371 114 QWFEVLDGLLGKHWRNIGLFFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLG 193 (465)
Q Consensus 114 ~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~ii~~~v~~pl~~l~~l~~l~~~s~~~ 193 (465)
=..+..++.||+.|+++...++.+-|+-++++-+..++|..+++.+..+.+.|..+++++...++.+ .++++-..|.--
T Consensus 264 IL~~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi~a~aefF~~~~p~~SY~~~v~if~i~sflvan~-GL~~Ii~isvPv 342 (431)
T COG1114 264 ILSAYSQHLFGSYGSILLGLIVFLACLTTAVGLIVACAEFFSKLVPKLSYKTWVIIFTLISFLVANL-GLEQIIKISVPV 342 (431)
T ss_pred HHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence 4566778899999999999999999999999999999999998888888888888887766666554 345555555433
No 95
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=74.83 E-value=1.4e+02 Score=32.83 Aligned_cols=99 Identities=16% Similarity=0.243 Sum_probs=55.4
Q ss_pred CchhHHHHHHHhhhhhhhh-chhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccHHH
Q 012371 39 GSVYDAWFSCASNQVAQVL-LTLPYSFSQLGLLSGILLQLFYGLMGSWTAYLISILYVEYRTRKEREKVDFRNHVIQWFE 117 (465)
Q Consensus 39 ~s~~~a~~~l~~~~iG~Gi-L~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~ 117 (465)
++..+...=.+-.++|.=. +=+-+...-+|...|..+.+++++.++.|..=+... ....-.|..| +|--
T Consensus 115 Gt~mGVyLPclQnIlGVilFiRLtWvVG~AGv~q~fllv~iCC~cTmLTaISmSAI--ATNGVVpaGG--------sYfm 184 (1075)
T KOG2082|consen 115 GTLMGVYLPCLQNILGVILFIRLTWVVGMAGVGQGFLLVFICCLCTMLTAISMSAI--ATNGVVPAGG--------SYFM 184 (1075)
T ss_pred ceeeeeeHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcCcccCCC--------eeEE
Confidence 4444555555556666543 346677777899999999888888888887766432 1111112111 4544
Q ss_pred HHHHhhchhhHHHHHHHHHHHHHHHHHHHHH
Q 012371 118 VLDGLLGKHWRNIGLFFNCTFLLFGSVIQLI 148 (465)
Q Consensus 118 l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i 148 (465)
+. +.+||-.+..+.++.++-.-.....|++
T Consensus 185 IS-RsLGPEFGgAVGlcFYLgtT~AaaMYIl 214 (1075)
T KOG2082|consen 185 IS-RSLGPEFGGAVGLCFYLGTTVAAAMYIL 214 (1075)
T ss_pred Ee-cccCccccceeeehhhhhhHHHHHHHHH
Confidence 43 3457766655555544433333334443
No 96
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=73.36 E-value=1.1e+02 Score=31.25 Aligned_cols=67 Identities=18% Similarity=0.178 Sum_probs=43.9
Q ss_pred ccccCCchhHHHHHHHhhhhhhhhch-hHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012371 34 FFWHGGSVYDAWFSCASNQVAQVLLT-LPYSFSQLGLLSGILLQLFYGLMGSWTAYLISILYVEYRTRK 101 (465)
Q Consensus 34 ~~~~~~s~~~a~~~l~~~~iG~GiL~-lP~a~~~~G~~~g~i~l~~~~~~~~~s~~ll~~~~~~~~~~~ 101 (465)
+.+++.|.+|+.+.-+.+.+|+|-++ +..|.+..|-. .++.+=+.+++..-+.+.=.-....+|+|+
T Consensus 58 ~~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~GGPG-AvFWMWi~Al~Gmat~f~E~~La~~Yr~kd 125 (452)
T COG1115 58 AGKGGVSSFQALMTSLAARVGTGNIAGVATAIALGGPG-AVFWMWIVALFGMATKFAESTLAQKYRVKD 125 (452)
T ss_pred CCCCCcChHHHHHHHHHhccCcchHHHHHHHHHcCCCc-cHHHHHHHHHHHHHHHHHHHHHHhheeEeC
Confidence 44567889999999999999999765 88899888843 455555555544444332222224455544
No 97
>PHA02764 hypothetical protein; Provisional
Probab=73.26 E-value=24 Score=34.35 Aligned_cols=88 Identities=10% Similarity=0.067 Sum_probs=48.1
Q ss_pred cCCchhHHHH-HHHhhhhhhhhchhHHHHHhh--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 012371 37 HGGSVYDAWF-SCASNQVAQVLLTLPYSFSQL--GLLSGILLQLFYGLMGSWTAYLISILYVEYRTRKEREKVDFRNHVI 113 (465)
Q Consensus 37 ~~~s~~~a~~-~l~~~~iG~GiL~lP~a~~~~--G~~~g~i~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~ 113 (465)
+..|.+++++ |+.+...|.++ +.|+=++.. |.- .+...++.++++. ...-|+.+..++.|++|-+|.
T Consensus 12 REvs~lDAF~~Nl~~m~~Gi~I-s~~~l~a~l~pG~n-lLLAWLLGGLlAL----PgAL~YAELGSAmPrAGGdYV---- 81 (399)
T PHA02764 12 KSFNILDIFSINLLYMGILSGI-SYPLFVSSLLKNVN-LLFAILIGAVFEI----PLLLMYYKLTTKFPLNGGDYA---- 81 (399)
T ss_pred eeccHHHHHHHHHHhhccchhH-HHHHHHhhcCCchh-HHHHHHHHHHHHH----HHHHHHHHHHhhCCCCCceEE----
Confidence 3456677776 87777777764 555533332 221 1222222333332 233344566777777774322
Q ss_pred cHHHHHHHhhchhhHHHHHHHHHHH
Q 012371 114 QWFEVLDGLLGKHWRNIGLFFNCTF 138 (465)
Q Consensus 114 ~y~~l~~~~~G~~~~~~~~~~~~~~ 138 (465)
..+++|||..+.+..+..++.
T Consensus 82 ----YISRAFGP~~GFLvG~a~WLt 102 (399)
T PHA02764 82 ----YIRTAFSSKFYTIFGISLWLT 102 (399)
T ss_pred ----EhHHhhCccHHHHHHHHHHHH
Confidence 346789998888776655543
No 98
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=70.59 E-value=1.4e+02 Score=31.04 Aligned_cols=242 Identities=14% Similarity=0.114 Sum_probs=113.0
Q ss_pred chhHHHHHHHhhhhhhhhchhHHHHHhhc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccHHH
Q 012371 40 SVYDAWFSCASNQVAQVLLTLPYSFSQLG--LLSGILLQLFYGLMGSWTAYLISILYVEYRTRKEREKVDFRNHVIQWFE 117 (465)
Q Consensus 40 s~~~a~~~l~~~~iG~GiL~lP~a~~~~G--~~~g~i~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~ 117 (465)
+.++-..--+...++++.--+..+--+.| |.-+++.+ +.++.++-...-... ++|.+|. .+|+=
T Consensus 57 s~~~~~~fW~~~~fnv~Tw~ia~s~l~lGLswwq~~~tv--------~vG~~~~~~f~~lns---~~G~~yh---IsFpv 122 (572)
T KOG2466|consen 57 SWWNYIAFWLADSFNVNTWMIAGSALELGLSWWQTWITV--------WVGYLFTAIFLVLNS---RPGSDYH---ISFPV 122 (572)
T ss_pred cHHHHHHHHHhccccccceeehhhHHhccCCHHHHHHHH--------HHHHHHHHHHHHHcc---CCCcccc---cceee
Confidence 45555555555666666666666666666 33333322 222222211111122 3555443 36766
Q ss_pred HHHHhhchhh---HHHHHHHHHHHHHHHH------HHHHHHhH--hhhhhhhcc-----CCchh--hhHhHHHHHhhhhc
Q 012371 118 VLDGLLGKHW---RNIGLFFNCTFLLFGS------VIQLIACA--SNIYYINDN-----LDKRT--WTYIFGACCATTVF 179 (465)
Q Consensus 118 l~~~~~G~~~---~~~~~~~~~~~~~g~~------~~y~i~~~--~~l~~~~~~-----~~~~~--~~ii~~~v~~pl~~ 179 (465)
..+..||-.+ ..+..+++-...+|+. +..+++-+ ....++... ..... +-+++-++.+|..+
T Consensus 123 ~sR~sFGiygS~~pIi~R~vma~vwYg~~awiGgecV~lmL~si~~~~~hipntl~~~~~tt~e~i~FfIFwv~s~~~~~ 202 (572)
T KOG2466|consen 123 LSRSSFGIYGSLWPIINRVVMACVWYGVNAWIGGECVQLMLKSIFKSFSHIPNTLGKPGTTTYEFIGFFIFWVASLPFYW 202 (572)
T ss_pred eeeeehhhhHhHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhhhhcCccccCCCCCchHHHHHHHHHHHHhhheee
Confidence 7777776555 3444555544444443 12221111 001111111 22222 33556667777777
Q ss_pred cCCCcchhHHHHHHHHHHHHHHHHHHHhhhh--cc--cCCCccC--CCCchhhHhHhHHHHHHHHhc----CccchHhHh
Q 012371 180 IPSFHNYRIWSFLGLIMTSFTAWYLTIASLV--HG--QVEGVKH--SGPTKMVLYFTGATNILYTFG----GHAVTVEIM 249 (465)
Q Consensus 180 l~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~--~g--~~~~~~~--~~~~~~~~~~~a~~~~~faf~----~~~~v~~i~ 249 (465)
.| +++++++-....+.+.+.+..+++.... +| +..+-+. ........+.. .++.++. +.-|.|..-
T Consensus 203 ~~-p~~ir~lf~~ka~~t~fA~~g~LIw~l~kAhG~G~l~~~~st~~gs~~aWa~~~---~i~~~~~~fstl~~N~pDFs 278 (572)
T KOG2466|consen 203 FP-PYKIRHLFTWKAVLTPFAAFGFLIWLLKKAHGLGHLFDSKSTVSGSAHAWAFVR---SIMSCIANFSTLIVNAPDFS 278 (572)
T ss_pred cc-HHHhhhHHHHHHhhhHHHHHHHHHHHHHhcCCccccccCCCcccccchhHHHHH---HHHHHHhccchhhccCchhH
Confidence 64 5666666555555554433333333332 33 1111011 11111122333 2333332 245677777
Q ss_pred hhccCCccchHH----HHHHHHHHHHHHHhHHHHHHHhhccccccccccccccC
Q 012371 250 HAMWKPQKFKSI----YLLATLYVLTLTLPSASAVYWAFGDMLLTHSNAFSLLP 299 (465)
Q Consensus 250 ~~mk~p~~~~~~----~~~s~~~~~~~y~~~g~~gy~~fG~~~~~~~~il~~l~ 299 (465)
+--|+|.+-... +-+.+.+..++=++++..++..||.+.=++-++++++-
T Consensus 279 RF~ksp~a~~~~Ql~alp~~~~l~~liGVlv~sa~~~iYG~~~W~Pldil~~~l 332 (572)
T KOG2466|consen 279 RFAKSPNAIWWGQLIALPLPFGLTPLIGVLVTSASKIIYGTNYWSPLDILNQWL 332 (572)
T ss_pred hhcCCCCccchhhhhhhhhhhhhhhheeeEehhhhhhhhcccccCHHHHHHHHh
Confidence 777777553222 22333334444466678889999998644446777664
No 99
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=69.48 E-value=39 Score=34.64 Aligned_cols=75 Identities=16% Similarity=0.070 Sum_probs=59.1
Q ss_pred HHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCchhhhHhHHHHHhhhhccCCCcchhHHHH
Q 012371 115 WFEVLDGLLGKHWRNIGLFFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSF 191 (465)
Q Consensus 115 y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~ii~~~v~~pl~~l~~l~~l~~~s~ 191 (465)
......+.+|+.++++..+.+.+-|+.++++-....++.++...+ .+.+.|..+..++..+++.+ .++++-..++
T Consensus 267 l~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~-isY~~~v~i~~l~S~~lSn~-G~~~II~~s~ 341 (439)
T PRK15433 267 LHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVP-LSYRTLVFILGGFSMVVSNL-GLSQLIQISV 341 (439)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CcHHHHHHHHHHHHHHHHHh-HHHHHHHHHH
Confidence 445678889999999999999999999999999888988887654 67778888888888888776 2455444444
No 100
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=52.84 E-value=1.9e+02 Score=28.68 Aligned_cols=38 Identities=24% Similarity=0.069 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHhhcccccccccccccc
Q 012371 259 KSIYLLATLYVLTLTLPSASAVYWAFGDMLLTHSNAFSLL 298 (465)
Q Consensus 259 ~~~~~~s~~~~~~~y~~~g~~gy~~fG~~~~~~~~il~~l 298 (465)
.+++..+...+...-..+...||....... +.++...+
T Consensus 47 ~~al~~tll~alp~pl~~~~~g~~L~~~~~--~~~~~~~l 84 (340)
T PF12794_consen 47 PRALLLTLLLALPLPLLLLAIGYLLQFAAW--SSPFSVAL 84 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc--cCchHHHH
Confidence 467777777777777788888888875544 33444443
No 101
>PF08844 DUF1815: Domain of unknown function (DUF1815); InterPro: IPR014943 This entry is about 100 amino acids in length and is functionally uncharacterised.
Probab=44.76 E-value=18 Score=28.11 Aligned_cols=27 Identities=19% Similarity=0.416 Sum_probs=19.5
Q ss_pred hHHHHHHHHHhccccccccccccCCCC
Q 012371 437 GWASMLNFIQQVDKFGLFTKCYQCPPH 463 (465)
Q Consensus 437 t~~si~~ii~~~~~~~~~~~~~~c~~~ 463 (465)
.+.+.+.+....++-|.-+.||+|+|.
T Consensus 15 LVm~LqALa~~Le~rG~~AsCYtC~dG 41 (105)
T PF08844_consen 15 LVMSLQALAIVLERRGYLASCYTCGDG 41 (105)
T ss_pred HHHHHHHHHHHHHhCCceeEEEecCCC
Confidence 344566666666777899999999663
No 102
>KOG1277 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.96 E-value=3.1e+02 Score=28.24 Aligned_cols=45 Identities=18% Similarity=0.112 Sum_probs=26.2
Q ss_pred HHHhhhhhhhhchhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012371 47 SCASNQVAQVLLTLPYSFSQLGLLSGILLQLFYGLMGSWTAYLISILYVEYR 98 (465)
Q Consensus 47 ~l~~~~iG~GiL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~ll~~~~~~~~ 98 (465)
.++.+.+|+|.=-.. ....++++.+++.+..+=+.++..+..-+.
T Consensus 293 ~Lfsa~lGsG~Qlf~-------l~~~ii~~Alvg~fy~~rGal~saaI~vYA 337 (593)
T KOG1277|consen 293 LLFSAVLGSGAQLFT-------LVLIIIMLALVGVFYTERGALLSAAIVVYA 337 (593)
T ss_pred HHHHHHhccccchHH-------HHHHHHHHHHHhhhhccchHHHHHHHHHHH
Confidence 578888999852221 224566667777766665555554433333
No 103
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=36.40 E-value=4.8e+02 Score=26.59 Aligned_cols=53 Identities=25% Similarity=0.352 Sum_probs=42.8
Q ss_pred HHHhhhhHHHHHHHHHHhcC-CchhhHHhhhhhhhhhhHHhhhhHHHHHHhcch
Q 012371 345 RALARLPVVIPIWFLAIIFP-FFGPINSTVGSLLVSFTVYIIPALAHMITFAPA 397 (465)
Q Consensus 345 ~~~~r~~~~~~~~~~A~~vp-~~~~i~~lvGs~~~~~l~~ilP~l~~l~~~~~~ 397 (465)
|...+......+.+.+...| -+....+..|++...+.+-++|.+++++-++..
T Consensus 324 r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~~ 377 (415)
T COG0814 324 RKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRKLI 377 (415)
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45566667778888888888 577888889989999999999999999876644
No 104
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=35.91 E-value=4e+02 Score=27.50 Aligned_cols=35 Identities=17% Similarity=0.071 Sum_probs=19.3
Q ss_pred cCCccchHHHHHHHHHHHHHHHhHHHHHHHhhcccc
Q 012371 253 WKPQKFKSIYLLATLYVLTLTLPSASAVYWAFGDML 288 (465)
Q Consensus 253 k~p~~~~~~~~~s~~~~~~~y~~~g~~gy~~fG~~~ 288 (465)
||+++.++....++...+.+-..+++. ...|++..
T Consensus 311 ~~~~~a~~~~~~~~~~~~~~~~~~~~i-~~~f~~~i 345 (455)
T COG0534 311 GNYKRARRAARLALKLSLLIALLIALL-LLLFREPI 345 (455)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 556667777766666665555443333 34444443
No 105
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=35.40 E-value=1.1e+02 Score=29.98 Aligned_cols=91 Identities=13% Similarity=0.100 Sum_probs=52.7
Q ss_pred hHhHhHHHHHHHHhcCc--cchHhHhh----------hccCCccchHHHHHHHHH------HHHHHHhHHHHHHHhhccc
Q 012371 226 VLYFTGATNILYTFGGH--AVTVEIMH----------AMWKPQKFKSIYLLATLY------VLTLTLPSASAVYWAFGDM 287 (465)
Q Consensus 226 ~~~~~a~~~~~faf~~~--~~v~~i~~----------~mk~p~~~~~~~~~s~~~------~~~~y~~~g~~gy~~fG~~ 287 (465)
++.+..+.+..|+|..- ..-||+.+ .|+++++..|.-.+.+-+ +.++=....+.|.+.||+-
T Consensus 145 p~LlgpIaVaAYsYMaLvPiiqPpimklLttkkeR~I~M~~~r~Vsk~ekiiFpivv~~~~~ll~P~a~pLig~Lm~Gnl 224 (360)
T PF03977_consen 145 PHLLGPIAVAAYSYMALVPIIQPPIMKLLTTKKERKIRMKQLRPVSKTEKIIFPIVVTILVGLLLPSAAPLIGMLMFGNL 224 (360)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHH
Confidence 57788888999998542 34455555 455555544433222221 2222234578999999998
Q ss_pred cccccccccccCc---ccHHHHHHHHHHHHHHH
Q 012371 288 LLTHSNAFSLLPR---TGFRDTAVILMLIHQFI 317 (465)
Q Consensus 288 ~~~~~~il~~l~~---~~~~~~~~~~~~i~~~~ 317 (465)
.+ ++.+.+.+.+ +.+.+++.++.-+++-.
T Consensus 225 ~r-Esgv~~rLs~taqn~l~nivTi~LGl~vGa 256 (360)
T PF03977_consen 225 LR-ESGVVERLSKTAQNELMNIVTIFLGLTVGA 256 (360)
T ss_pred HH-HhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87 4567777743 33555555554444433
No 106
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=34.07 E-value=52 Score=30.47 Aligned_cols=86 Identities=13% Similarity=0.090 Sum_probs=46.9
Q ss_pred hhHHHHHHHHHHhcCCchhhHHhh---------hhhhhhhhHHhhhhHHHHHHhcchhhhhccccCCCcccCcchhhhHH
Q 012371 350 LPVVIPIWFLAIIFPFFGPINSTV---------GSLLVSFTVYIIPALAHMITFAPAAARENAVERPPKCLGGWAGLYSL 420 (465)
Q Consensus 350 ~~~~~~~~~~A~~vp~~~~i~~lv---------Gs~~~~~l~~ilP~l~~l~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 420 (465)
-+....++++|..++.++-++... ||.+|.-+.++= |+.+.|....-++-+ .. ..|+
T Consensus 160 d~~F~~af~vAflFnwIGFlltycl~tT~agRYGA~~GfGLsLik----wilIv~~sd~f~~y~-n~---------q~wL 225 (262)
T KOG4812|consen 160 DGIFMWAFIVAFLFNWIGFLLTYCLTTTHAGRYGAISGFGLSLIK----WILIVRFSDDFESYF-NG---------QYWL 225 (262)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhccchhhhe----eeEEeeccccccccc-cc---------chHH
Confidence 455666777787888777777665 777776666663 444444332111111 10 1245
Q ss_pred HHHHHHHHHHHHhhhhh--HHHHHHHHHhccc
Q 012371 421 NIFVVVWVLVVGFGFGG--WASMLNFIQQVDK 450 (465)
Q Consensus 421 ~~~iii~~g~~~~v~gt--~~si~~ii~~~~~ 450 (465)
.|+++++ |.+...-|+ |..|++.-+.++.
T Consensus 226 wwi~~vl-G~ll~lr~~i~YikVrrm~~~~s~ 256 (262)
T KOG4812|consen 226 WWIFLVL-GLLLFLRGFINYIKVRRMEEKYSN 256 (262)
T ss_pred HHHHHHH-HHHHHHHHHHhHHHHhhHHHHHhc
Confidence 5665554 454443344 4566776666553
No 107
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=32.35 E-value=1.6e+02 Score=22.74 Aligned_cols=53 Identities=11% Similarity=0.073 Sum_probs=28.9
Q ss_pred HHHHHHhcCccchHhHhhhccCCccc-hHHHHHHHHHHHHHHHhHHHHHHHhhcc
Q 012371 233 TNILYTFGGHAVTVEIMHAMWKPQKF-KSIYLLATLYVLTLTLPSASAVYWAFGD 286 (465)
Q Consensus 233 ~~~~faf~~~~~v~~i~~~mk~p~~~-~~~~~~s~~~~~~~y~~~g~~gy~~fG~ 286 (465)
|++..+-.|...+.+..+.=.+|.+. .|++.+ +.++.-.-+.+|++.|-.||.
T Consensus 18 GIiLL~~ACIFAfidFSK~~s~~~~~~wRalSi-i~FIlG~vl~lGilifs~y~~ 71 (91)
T PHA02680 18 GVLLLTAACVFAFVDFSKNTSNVTDYVWRALSV-TCFIVGAVLLLGLFVFSMYRK 71 (91)
T ss_pred HHHHHHHHHHHhhhhhhccCCCCcchhHHHHHH-HHHHHHHHHHHHHHHHHHhcc
Confidence 44444445555556666655455444 344432 222233345668999999983
No 108
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=30.37 E-value=6.1e+02 Score=25.94 Aligned_cols=76 Identities=12% Similarity=-0.011 Sum_probs=47.2
Q ss_pred CchhHHHHHHHhhhhhhhhchhHHHHHh-hc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccH
Q 012371 39 GSVYDAWFSCASNQVAQVLLTLPYSFSQ-LG--LLSGILLQLFYGLMGSWTAYLISILYVEYRTRKEREKVDFRNHVIQW 115 (465)
Q Consensus 39 ~s~~~a~~~l~~~~iG~GiL~lP~a~~~-~G--~~~g~i~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y 115 (465)
.+.+..-+.+..-..|+|-+-.|-..-+ +| |+++...+++.+..-=.-+.+-+ .+. | .++
T Consensus 5 k~~~~~GfmLFalFFGAGNlIFPP~LG~~aG~~~~~A~lGFllTgVglPlLgiIa~-------a~~---g-------~~~ 67 (431)
T COG1114 5 KDIIALGFMLFALFFGAGNLIFPPMLGLHAGEHVWPAILGFLLTGVGLPLLGIIAV-------ALY---G-------GGV 67 (431)
T ss_pred hhHHHHHHHHHHHHhcCCCccCChhhhhhcCccHHHHHHHHHHHHhhHHHHHHHHh-------hcc---C-------CCH
Confidence 3456677889999999999999977544 55 66666666665553322222111 110 1 178
Q ss_pred HHHHHHhhchhhHHHHH
Q 012371 116 FEVLDGLLGKHWRNIGL 132 (465)
Q Consensus 116 ~~l~~~~~G~~~~~~~~ 132 (465)
+++.++. ||+...+..
T Consensus 68 ~~l~~~i-~~~fg~~f~ 83 (431)
T COG1114 68 ESLATRI-GPWFGVLFA 83 (431)
T ss_pred HHHhhhc-cchHHHHHH
Confidence 8998887 677666543
No 109
>PHA03048 IMV membrane protein; Provisional
Probab=29.92 E-value=1.8e+02 Score=22.44 Aligned_cols=55 Identities=13% Similarity=0.068 Sum_probs=31.9
Q ss_pred HHHHHHHhcCccchHhHhhhccCCccchHHHHHHHHHHHHHHHhHHHHHHHhhcccc
Q 012371 232 ATNILYTFGGHAVTVEIMHAMWKPQKFKSIYLLATLYVLTLTLPSASAVYWAFGDML 288 (465)
Q Consensus 232 ~~~~~faf~~~~~v~~i~~~mk~p~~~~~~~~~s~~~~~~~y~~~g~~gy~~fG~~~ 288 (465)
.|++..+-.|...+.+..+. |.+..-.|++... .++.-.-+.+|++-|..||..+
T Consensus 17 ~GIiLL~~aCIfAfidfsK~-k~~~~~wRalsii-~FIlgivl~lG~~ifsmy~r~C 71 (93)
T PHA03048 17 GGIILLAASCIFAFVDFSKN-KATVTVWRALSGI-AFVLGIVMTIGMLIYSMWGRYC 71 (93)
T ss_pred HHHHHHHHHHHHhhhhhhcC-CCcchhHHHHHHH-HHHHHHHHHHHHHHHHHHhccc
Confidence 35555555566666677666 4333334444322 2223334667999999999766
No 110
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=26.80 E-value=3.2e+02 Score=28.85 Aligned_cols=32 Identities=9% Similarity=-0.074 Sum_probs=19.4
Q ss_pred ccccccccccccccc-ccCCchhHHHHHHHhhhhhhhh
Q 012371 21 EEDSKSSKSKLSSFF-WHGGSVYDAWFSCASNQVAQVL 57 (465)
Q Consensus 21 ~~~~~~~~~~~~~~~-~~~~s~~~a~~~l~~~~iG~Gi 57 (465)
++++|.+.|..+.+. +.+.. ..++++.+|+|+
T Consensus 240 ~~~ee~GWKlvhgDVFR~P~~-----~~lls~lvG~G~ 272 (521)
T PF02990_consen 240 DDQEESGWKLVHGDVFRPPKH-----PMLLSALVGTGI 272 (521)
T ss_pred ccccccchhhhhHHHhcCcCC-----chHHHhHhcchh
Confidence 444567777775543 33332 257788888885
No 111
>PRK01844 hypothetical protein; Provisional
Probab=25.95 E-value=1.3e+02 Score=22.28 Aligned_cols=29 Identities=28% Similarity=0.378 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHhccc
Q 012371 422 IFVVVWVLVVGFGFGGWASMLNFIQQVDK 450 (465)
Q Consensus 422 ~~iii~~g~~~~v~gt~~si~~ii~~~~~ 450 (465)
+++++++.++|.+.|.|-|-+-.-+..++
T Consensus 7 I~l~I~~li~G~~~Gff~ark~~~k~lk~ 35 (72)
T PRK01844 7 ILVGVVALVAGVALGFFIARKYMMNYLQK 35 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445667777888877777666654
No 112
>TIGR00267 conserved hypothetical protein TIGR00267. This family is represented in three of the first four completed archaeal genomes, with two members in A. fulgidus.
Probab=25.28 E-value=1.2e+02 Score=26.61 Aligned_cols=26 Identities=12% Similarity=0.198 Sum_probs=18.5
Q ss_pred hhHHHHHHHhhhhhhhhchhHHHHHh
Q 012371 41 VYDAWFSCASNQVAQVLLTLPYSFSQ 66 (465)
Q Consensus 41 ~~~a~~~l~~~~iG~GiL~lP~a~~~ 66 (465)
...+..+-+...+|.-+--+|+-+.+
T Consensus 89 ~~aAl~sgls~~~g~liPllp~~~~~ 114 (169)
T TIGR00267 89 YMSGFIDGFSTFMGSFVPVLPFLVFD 114 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 34567777778888877778887643
No 113
>PRK15475 oxaloacetate decarboxylase subunit beta; Provisional
Probab=24.74 E-value=1.2e+02 Score=30.31 Aligned_cols=89 Identities=17% Similarity=0.241 Sum_probs=50.2
Q ss_pred hHhHhHHHHHHHHhcC--ccchHhHhh----------hccCCccchH---HH---HHHHHHHHHHHHhHHHHHHHhhccc
Q 012371 226 VLYFTGATNILYTFGG--HAVTVEIMH----------AMWKPQKFKS---IY---LLATLYVLTLTLPSASAVYWAFGDM 287 (465)
Q Consensus 226 ~~~~~a~~~~~faf~~--~~~v~~i~~----------~mk~p~~~~~---~~---~~s~~~~~~~y~~~g~~gy~~fG~~ 287 (465)
++.+.++.+..|+|.. ...-||+.+ .|+++++..| .+ ......+.++=...-+.|.+.||+-
T Consensus 216 P~Llg~IaVAAYSYMaLVPiIQPpimklLTTkkER~I~M~~lr~VSk~eKIlFPivv~i~~~ll~P~a~PLiGmlmfGNl 295 (433)
T PRK15475 216 PELLGAIAVAAYSYMALVPLIQPPIMKALTTETERKIRMVQLRTVSKREKILFPVVLLLLVALLLPDAAPLLGMFCFGNL 295 (433)
T ss_pred hHhHHHHHHHHHHHHHHHhcccchHHHhccCHHHhCccCCCCCCCCccchhHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 5678889999999854 233455555 4444443322 22 1122222222234578999999998
Q ss_pred cccccccccccCc---ccHHHHHHHHHHHHH
Q 012371 288 LLTHSNAFSLLPR---TGFRDTAVILMLIHQ 315 (465)
Q Consensus 288 ~~~~~~il~~l~~---~~~~~~~~~~~~i~~ 315 (465)
.+ ++.+.+.+.+ +.+.+++.++.-+++
T Consensus 296 lr-EsGVv~rLs~taqn~L~nivTIfLGl~V 325 (433)
T PRK15475 296 MR-ESGVVERLSDTVQNGLINIVTIFLGLSV 325 (433)
T ss_pred HH-HhccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77 4667777754 334555544444443
No 114
>PRK15476 oxaloacetate decarboxylase subunit beta; Provisional
Probab=24.48 E-value=1.2e+02 Score=30.23 Aligned_cols=89 Identities=17% Similarity=0.241 Sum_probs=50.0
Q ss_pred hHhHhHHHHHHHHhcC--ccchHhHhh----------hccCCccchH---HH---HHHHHHHHHHHHhHHHHHHHhhccc
Q 012371 226 VLYFTGATNILYTFGG--HAVTVEIMH----------AMWKPQKFKS---IY---LLATLYVLTLTLPSASAVYWAFGDM 287 (465)
Q Consensus 226 ~~~~~a~~~~~faf~~--~~~v~~i~~----------~mk~p~~~~~---~~---~~s~~~~~~~y~~~g~~gy~~fG~~ 287 (465)
++.+.++.+..|+|.. ...-||+.+ .|+++++..| .+ ......+.++=...-+.|.+.||+-
T Consensus 216 P~Llg~IaVAAYSYMaLVPiIQPpimklLTTkkER~I~M~~lr~VSk~eKIlFPivv~i~~~ll~P~a~PLiGmlmfGNl 295 (433)
T PRK15476 216 PELLGAIAVAAYSYMALVPLIQPPIMKALTTEKERKIRMVQLRTVSKREKILFPVVLLLLVALLLPDAAPLLGMFCFGNL 295 (433)
T ss_pred hHhHHHHHHHHHHHHHHHhcccchHHHhccCHHHhCccCCCCCCCCccchhHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 5678889999999854 233455555 3444443322 22 1112222222234578999999998
Q ss_pred cccccccccccCc---ccHHHHHHHHHHHHH
Q 012371 288 LLTHSNAFSLLPR---TGFRDTAVILMLIHQ 315 (465)
Q Consensus 288 ~~~~~~il~~l~~---~~~~~~~~~~~~i~~ 315 (465)
.+ ++.+.+.+.+ +.+.+++.++.-+++
T Consensus 296 lr-EsGVv~rLs~taqn~L~nivTIfLGl~V 325 (433)
T PRK15476 296 MR-ESGVVERLSDTVQNGLINIVTIFLGLSV 325 (433)
T ss_pred HH-HhccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77 4667777754 334555544444443
No 115
>PRK15477 oxaloacetate decarboxylase subunit beta; Provisional
Probab=24.38 E-value=1.2e+02 Score=30.21 Aligned_cols=89 Identities=17% Similarity=0.241 Sum_probs=50.0
Q ss_pred hHhHhHHHHHHHHhcC--ccchHhHhh----------hccCCccchH---HH---HHHHHHHHHHHHhHHHHHHHhhccc
Q 012371 226 VLYFTGATNILYTFGG--HAVTVEIMH----------AMWKPQKFKS---IY---LLATLYVLTLTLPSASAVYWAFGDM 287 (465)
Q Consensus 226 ~~~~~a~~~~~faf~~--~~~v~~i~~----------~mk~p~~~~~---~~---~~s~~~~~~~y~~~g~~gy~~fG~~ 287 (465)
++.+.++.+..|+|.. ...-||+.+ .|+++++..| .+ ......+.++=...-+.|.+.||+-
T Consensus 216 P~Llg~IaVAAYSYMaLVPiIQPpimklLTTkkER~I~M~~lr~VSk~eKIlFPivv~i~~~ll~P~a~PLiGmlmfGNl 295 (433)
T PRK15477 216 PELLGAIAVAAYSYMALVPLIQPPIMKALTTEKERKIRMVQLRTVSKREKILFPVVLLLLVALLLPDAAPLLGMFCFGNL 295 (433)
T ss_pred hHhHHHHHHHHHHHHHHHhcccchHHHhccCHHHhCccCCCCCCCCccchhHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 5678889999999854 233455555 3444443322 22 1112222222234578999999998
Q ss_pred cccccccccccCc---ccHHHHHHHHHHHHH
Q 012371 288 LLTHSNAFSLLPR---TGFRDTAVILMLIHQ 315 (465)
Q Consensus 288 ~~~~~~il~~l~~---~~~~~~~~~~~~i~~ 315 (465)
.+ ++.+.+.+.+ +.+.+++.++.-+++
T Consensus 296 lr-EsGVv~rLs~taqn~L~nivTIfLGl~V 325 (433)
T PRK15477 296 MR-ESGVVERLSDTVQNGLINIVTIFLGLSV 325 (433)
T ss_pred HH-HhccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77 4667777754 334555544444443
No 116
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=24.14 E-value=2e+02 Score=21.74 Aligned_cols=18 Identities=22% Similarity=0.052 Sum_probs=7.9
Q ss_pred HHhhhhhhhhchhHHHHH
Q 012371 48 CASNQVAQVLLTLPYSFS 65 (465)
Q Consensus 48 l~~~~iG~GiL~lP~a~~ 65 (465)
.....+|...+.......
T Consensus 46 ~~~~v~gl~llv~G~~~~ 63 (82)
T PF11239_consen 46 VLLVVVGLALLVAGVVLS 63 (82)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 333445554444444333
No 117
>COG4709 Predicted membrane protein [Function unknown]
Probab=23.45 E-value=5.5e+02 Score=23.08 Aligned_cols=51 Identities=14% Similarity=0.181 Sum_probs=26.5
Q ss_pred cCCchhHHHHHHHhhhhhhhhchhHHHHHh-hchhHHHHHHHHHHHHHHHHHHHHH
Q 012371 37 HGGSVYDAWFSCASNQVAQVLLTLPYSFSQ-LGLLSGILLQLFYGLMGSWTAYLIS 91 (465)
Q Consensus 37 ~~~s~~~a~~~l~~~~iG~GiL~lP~a~~~-~G~~~g~i~l~~~~~~~~~s~~ll~ 91 (465)
...+..++..++ +|.|+++.|...-. .|.+..++.+.+.++.-.++.+.++
T Consensus 74 ~~~n~~~aii~~----~~L~~~~v~i~Lpl~~~vi~~viailv~~lt~if~~~a~~ 125 (195)
T COG4709 74 TQKNVRRAIIAL----IGLGLLAVIIGLPLLIGVILFVIAILVAALTLIFSGWALV 125 (195)
T ss_pred cccchHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666664 45666666665422 2333444444444455555555554
No 118
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=23.41 E-value=1.4e+02 Score=29.33 Aligned_cols=88 Identities=16% Similarity=0.217 Sum_probs=49.4
Q ss_pred hHhHhHHHHHHHHhcCc--cchHhHhh----------hccCCccchH---HH---HHHHHHHHHHHHhHHHHHHHhhccc
Q 012371 226 VLYFTGATNILYTFGGH--AVTVEIMH----------AMWKPQKFKS---IY---LLATLYVLTLTLPSASAVYWAFGDM 287 (465)
Q Consensus 226 ~~~~~a~~~~~faf~~~--~~v~~i~~----------~mk~p~~~~~---~~---~~s~~~~~~~y~~~g~~gy~~fG~~ 287 (465)
++.+..+.+..|+|..- ..-||+.+ .|+++++..| .+ ..+...+.++=...-+.|.+.||+-
T Consensus 145 p~Llg~IaVAAYsYMaLvPiiqPpimklLttkkeR~I~M~~~r~Vsk~eKi~Fpivv~~i~~ll~P~a~pLig~Lm~Gnl 224 (354)
T TIGR01109 145 PELLAAIAVAAYSYMALVPIIQPPIMKALTSEKERKIRMKQLRTVSKREKILFPIVLLLLVALLIPKALPLVGMLMFGNL 224 (354)
T ss_pred hHHHHHHHHHHHHHHHHHhcccchHHHhhcChHHhccccCCCCCcCccchhHHHHHHHHHHHHHccchHHHHHHHHHHHH
Confidence 57788999999998542 34455555 3444433322 21 1122222222245578999999998
Q ss_pred cccccccccccCc---ccHHHHHHHHHHHH
Q 012371 288 LLTHSNAFSLLPR---TGFRDTAVILMLIH 314 (465)
Q Consensus 288 ~~~~~~il~~l~~---~~~~~~~~~~~~i~ 314 (465)
.+ ++.+.+.+.+ +.+.+++.++.-++
T Consensus 225 lr-EsGv~~rl~~taqn~l~nivTifLGl~ 253 (354)
T TIGR01109 225 MR-ESGVVERLSKTASNELLNIVTILLGLS 253 (354)
T ss_pred HH-HhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87 4667777753 33444444444433
No 119
>PF05805 L6_membrane: L6 membrane protein; InterPro: IPR008661 This family consists of several eukaryotic L6 membrane proteins. L6, IL-TMP, and TM4SF5 are cell surface proteins predicted to have four transmembrane domains. Previous sequence analysis led to their assignment as members of the tetraspanin superfamily it has now been found that that they are not significantly related to genuine tetraspanins, but instead constitute their own L6 family []. Several members of this family have been implicated in Homo sapiens cancer [, ].; GO: 0016021 integral to membrane
Probab=23.19 E-value=2.6e+02 Score=25.26 Aligned_cols=89 Identities=10% Similarity=-0.010 Sum_probs=49.5
Q ss_pred chhhHHhhhhhhhhhhHHhhhhHHHHHHhcchhhh-hccccCCCcccCcchhhhHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 012371 366 FGPINSTVGSLLVSFTVYIIPALAHMITFAPAAAR-ENAVERPPKCLGGWAGLYSLNIFVVVWVLVVGFGFGGWASMLNF 444 (465)
Q Consensus 366 ~~~i~~lvGs~~~~~l~~ilP~l~~l~~~~~~~~~-~~~~~~~~~~~~~w~~~~~~~~~iii~~g~~~~v~gt~~si~~i 444 (465)
++...-..|++.+.=+.-++|+...+..++++--. -......+| -.....++.-.+ |++|.++....|..++
T Consensus 43 is~~vw~f~Gi~GgGlmvl~pa~~~l~~~~~~cCgccg~~~c~~r------~~M~~Sil~a~i-gi~Ga~Yc~ivS~~aL 115 (195)
T PF05805_consen 43 ISCEVWYFGGIIGGGLMVLLPAIVFLAAGKRDCCGCCGNECCGNR------CGMFLSILFAAI-GILGAGYCFIVSGLAL 115 (195)
T ss_pred cchhheecCccccchHHHHHHHHHHHHhCCCcccccccCcccccc------cchHHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence 33455666777777777778999988887763100 000000001 123355444443 6776666666777777
Q ss_pred HHh---ccccccccccccCC
Q 012371 445 IQQ---VDKFGLFTKCYQCP 461 (465)
Q Consensus 445 i~~---~~~~~~~~~~~~c~ 461 (465)
.+. ..+.+.+..||.|.
T Consensus 116 ~~GP~C~~~~~~W~ypF~~~ 135 (195)
T PF05805_consen 116 SEGPLCCTGNLQWFYPFKDT 135 (195)
T ss_pred hhCCeeeccCCcCCCCCCCC
Confidence 663 11136677788873
No 120
>PRK11281 hypothetical protein; Provisional
Probab=22.52 E-value=1.3e+03 Score=27.11 Aligned_cols=29 Identities=21% Similarity=0.161 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHhhccc
Q 012371 259 KSIYLLATLYVLTLTLPSASAVYWAFGDM 287 (465)
Q Consensus 259 ~~~~~~s~~~~~~~y~~~g~~gy~~fG~~ 287 (465)
++++.+++..+....+++...||+.+...
T Consensus 543 ~~al~~t~l~alp~~l~~~~~g~~~~~~~ 571 (1113)
T PRK11281 543 PKAILITLLLALPVTLIFLAVGLILLTDA 571 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 46777777777777777778888877543
No 121
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=21.73 E-value=81 Score=21.12 Aligned_cols=28 Identities=25% Similarity=0.216 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhhcccc
Q 012371 261 IYLLATLYVLTLTLPSASAVYWAFGDML 288 (465)
Q Consensus 261 ~~~~s~~~~~~~y~~~g~~gy~~fG~~~ 288 (465)
+..+++.+..++.-+.|..-|.+||+..
T Consensus 7 A~~~~i~i~~lL~~~TgyaiYtaFGppS 34 (46)
T PRK13183 7 ALSLAITILAILLALTGFGIYTAFGPPS 34 (46)
T ss_pred hHHHHHHHHHHHHHHhhheeeeccCCcc
Confidence 3444555555555555666677888654
No 122
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=21.40 E-value=6e+02 Score=25.99 Aligned_cols=75 Identities=7% Similarity=-0.105 Sum_probs=47.3
Q ss_pred hhchhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhh-ccCCchhhhHhHHHHHhhhhccCCCcchhHHHHHHHHHH
Q 012371 122 LLGKHWRNIGLFFNCTFLLFGSVIQLIACASNIYYIN-DNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLIMT 197 (465)
Q Consensus 122 ~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~-~~~~~~~~~ii~~~v~~pl~~l~~l~~l~~~s~~~~~~~ 197 (465)
.+|.++.+++.+++.++.+.+.+++.....++++++. ++.....+-+++ +++.++..+.+++-+..++=+++..+
T Consensus 302 ~~g~~g~~~v~i~l~lFafTTilg~~~yge~~~~yl~~~~~~~~~~ri~~-i~~~~~G~~~~~~~vW~~~Di~~~lm 377 (416)
T PF01235_consen 302 VLGSWGPYFVAIALFLFAFTTILGWYYYGEKCAEYLFGGKKAIWIYRILF-IAMVFIGAVIDLDLVWDLADIANGLM 377 (416)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEeeeehh-hhhhhhhhcccchhHHHHHHHHHHHH
Confidence 3578889999999999999999999988888888876 322222222222 22333333345555555555555444
No 123
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=20.38 E-value=2.8e+02 Score=21.55 Aligned_cols=57 Identities=11% Similarity=0.097 Sum_probs=32.6
Q ss_pred HHHHHHHHhcCccchHhHhhhccCCcc-chHHHHHHHHHHHHHHHhHHHHHHHhhccccc
Q 012371 231 GATNILYTFGGHAVTVEIMHAMWKPQK-FKSIYLLATLYVLTLTLPSASAVYWAFGDMLL 289 (465)
Q Consensus 231 a~~~~~faf~~~~~v~~i~~~mk~p~~-~~~~~~~s~~~~~~~y~~~g~~gy~~fG~~~~ 289 (465)
..|++..+..|...+.+..+.=+ |.+ -.|++... .+++-.-+.+|++-|-.||..+.
T Consensus 16 i~GiiLL~~aCIfAfidfsK~~~-~~~~~wRalSii-~FI~giil~lG~~i~s~ygr~C~ 73 (92)
T PF05767_consen 16 IGGIILLIAACIFAFIDFSKNTK-PTDYTWRALSII-CFILGIILTLGIVIFSMYGRYCR 73 (92)
T ss_pred HHHHHHHHHHHHHHhhhhccCCC-CchhHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhcC
Confidence 34566666666666677666444 333 33444322 22222345668888888887763
Done!