Query 012371
Match_columns 465
No_of_seqs 151 out of 1651
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 08:09:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012371.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012371hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 99.7 5.3E-14 1.8E-18 143.5 33.2 348 36-398 7-380 (445)
2 3gia_A Uncharacterized protein 99.5 1.6E-11 5.4E-16 125.1 28.6 343 36-397 5-369 (444)
3 4djk_A Probable glutamate/gamm 99.4 1.6E-10 5.4E-15 119.9 31.9 343 35-398 9-397 (511)
4 2jln_A MHP1; hydantoin, transp 99.0 1.8E-07 6.1E-12 96.5 26.4 203 40-257 28-239 (501)
5 3dh4_A Sodium/glucose cotransp 97.8 0.046 1.6E-06 56.3 30.9 145 38-197 21-167 (530)
6 2xq2_A Sodium/glucose cotransp 97.5 0.11 3.9E-06 54.1 32.1 145 38-197 50-196 (593)
7 2a65_A Leutaa, Na(+):neurotran 23.5 5.7E+02 0.019 25.6 35.7 30 39-68 9-39 (519)
8 4b4a_A TATC, SEC-independent p 19.6 4.7E+02 0.016 23.3 8.9 54 314-372 155-209 (249)
9 4b4a_A TATC, SEC-independent p 12.1 7.5E+02 0.026 21.9 9.4 94 299-395 57-176 (249)
10 3mp7_B Preprotein translocase 7.9 4.9E+02 0.017 17.6 3.9 29 251-283 21-51 (61)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=99.69 E-value=5.3e-14 Score=143.49 Aligned_cols=348 Identities=11% Similarity=-0.008 Sum_probs=194.9
Q ss_pred ccCCchhHHHHHHHhhhhhhhhchhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccH
Q 012371 36 WHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGLLSGILLQLFYGLMGSWTAYLISILYVEYRTRKEREKVDFRNHVIQW 115 (465)
Q Consensus 36 ~~~~s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y 115 (465)
+++.+.++..+..+++++|+|++.+|...++.|.. +++..++.++........+ .|..++.|+.| ++
T Consensus 7 ~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~~-~~~~~li~~~~~~~~a~~~----~el~~~~p~~G--------g~ 73 (445)
T 3l1l_A 7 AHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVY----AKMSFLDPSPG--------GS 73 (445)
T ss_dssp CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCTH-HHHHHHHHHHHHHHHHHHH----HHHHHHCCCTT--------TH
T ss_pred CCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhhH-HHHHHHHHHHHHHHHHHHH----HHHHccCCCCC--------Cc
Confidence 35678899999999999999999999998888864 6777777777776665554 45566665433 66
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCchhhhHhHHH-HHhh--hhccCCCcchhHHHHH
Q 012371 116 FEVLDGLLGKHWRNIGLFFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGA-CCAT--TVFIPSFHNYRIWSFL 192 (465)
Q Consensus 116 ~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~ii~~~-v~~p--l~~l~~l~~l~~~s~~ 192 (465)
.+..++.+||..+++..+..++........+....++.+..+.+.........+..+ +.+. ....+..+....++.+
T Consensus 74 y~~~~~~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~ 153 (445)
T 3l1l_A 74 YAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPWVLTITCVVVLWIFVLLNIVGPKMITRVQAV 153 (445)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGGSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hhhHHhHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccccccHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 778899999999999988887776666667776667766655443332222212221 1111 1222334444444333
Q ss_pred HHHHHHHHHHHHHHhhhhcccCCCc----cCCCCchhhHhHhHHHHHHHHhcCccchHhHhhhccCCc-cchHHHHHHHH
Q 012371 193 GLIMTSFTAWYLTIASLVHGQVEGV----KHSGPTKMVLYFTGATNILYTFGGHAVTVEIMHAMWKPQ-KFKSIYLLATL 267 (465)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~~~a~~~~~faf~~~~~v~~i~~~mk~p~-~~~~~~~~s~~ 267 (465)
.....+...+.+++..+.+.+++.. ++..+.++..++.++....|+|.|........+|+|||+ +.+|+...+..
T Consensus 154 ~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~a~~~~~~ 233 (445)
T 3l1l_A 154 ATVLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVL 233 (445)
T ss_dssp HHHHHHHHHHHHHHTTSTTCCCCCCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhChhhcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccHHHHHHHH
Confidence 3322222211222222222221111 111222356788889999999999999999999999995 57999999999
Q ss_pred HHHHHHHhHHHHHHHhhccccccc--ccccc---ccCcccHHHHHHHHHHHHHHHHHHhhhccHHHHHHHH---------
Q 012371 268 YVLTLTLPSASAVYWAFGDMLLTH--SNAFS---LLPRTGFRDTAVILMLIHQFITFGFACTPLYFVWEKF--------- 333 (465)
Q Consensus 268 ~~~~~y~~~g~~gy~~fG~~~~~~--~~il~---~l~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~--------- 333 (465)
.+.++|+...+......+.+...+ .+... ....++...+..+...++.+.+.--......+.+..+
T Consensus 234 ~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~~ 313 (445)
T 3l1l_A 234 IAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPI 313 (445)
T ss_dssp HHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTSSCGG
T ss_pred HHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHH
Confidence 999999888777666665432101 11111 1111333344455555554444433332222222221
Q ss_pred hcCCCCcchhhHHHhhhhHHHHHHHHHHhcC----CchhhHHhhhhhhhhhhHHhhhhHHHHHHhcchh
Q 012371 334 IGVHNTKSTFKRALARLPVVIPIWFLAIIFP----FFGPINSTVGSLLVSFTVYIIPALAHMITFAPAA 398 (465)
Q Consensus 334 ~~~~~~~~~~~~~~~r~~~~~~~~~~A~~vp----~~~~i~~lvGs~~~~~l~~ilP~l~~l~~~~~~~ 398 (465)
+++.++++.+.+-+.-...+.....+....| .++.+.++.+ .+..+.|.++.+.+++.+|+++
T Consensus 314 ~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~y~~~~~~~~~~r~~~~ 380 (445)
T 3l1l_A 314 FARVNKAGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSV--IFTLVPYLYTCAALLLLGHGHF 380 (445)
T ss_dssp GGCCCTTCCCHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHSSSS
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCc
Confidence 1111122222222221121111111111122 3455555543 3567889999999999887654
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=99.49 E-value=1.6e-11 Score=125.06 Aligned_cols=343 Identities=10% Similarity=-0.003 Sum_probs=186.1
Q ss_pred ccCCchhHHHHHHHhhhhhhhhchhHH-HHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccc
Q 012371 36 WHGGSVYDAWFSCASNQVAQVLLTLPY-SFSQLGLLSGILLQLFYGLMGSWTAYLISILYVEYRTRKEREKVDFRNHVIQ 114 (465)
Q Consensus 36 ~~~~s~~~a~~~l~~~~iG~GiL~lP~-a~~~~G~~~g~i~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 114 (465)
+++.+.++..+..+++++|+|++..|. +..++|. ..++..++.+++.......+ .|..++.|+.| +
T Consensus 5 ~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~-~~~~~~li~~~~~~~~~~~~----~el~~~~P~~G--------g 71 (444)
T 3gia_A 5 NKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGR-NLPETFILSGIYALLVAYSY----TKLGAKIVSNA--------G 71 (444)
T ss_dssp CCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGG-GHHHHHHHHHHHHHHHHHHH----HHHHTTCCCTT--------T
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH----HHHHhhCCCCC--------c
Confidence 456788999999999999999998874 4556776 46667777777776665655 45566665433 5
Q ss_pred HHHHHHHhhchh--hHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhccCCchhhhHhHHH-HHhh--hhccCCCcchhHH
Q 012371 115 WFEVLDGLLGKH--WRNIGLFFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGA-CCAT--TVFIPSFHNYRIW 189 (465)
Q Consensus 115 y~~l~~~~~G~~--~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~ii~~~-v~~p--l~~l~~l~~l~~~ 189 (465)
..+..++.+|++ +.++ .+..++........+....++.+..+.+..+...+..+... +.+. ....+..+....+
T Consensus 72 ~y~~~~~~~G~~~~~g~~-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~ 150 (444)
T 3gia_A 72 PIAFIHKAIGDNIITGAL-SILLWMSYVISIALFAKGFAGYFLPLINAPINTFNIAITEIGIVAFFTALNFFGSKAVGRA 150 (444)
T ss_dssp HHHHHHHHHCSSHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHhHHHHhCcchHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 667888899986 3333 34444444445555665666666655444333333222222 2222 2222334444444
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccCCCccC-CCCchhhHhHhHHHHHHHHhcCccchHhHhhhccCCcc-chHHHHHHHH
Q 012371 190 SFLGLIMTSFTAWYLTIASLVHGQVEGVKH-SGPTKMVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKSIYLLATL 267 (465)
Q Consensus 190 s~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~a~~~~~faf~~~~~v~~i~~~mk~p~~-~~~~~~~s~~ 267 (465)
+.......+...+.+++..+...++++..+ ..+.++.+++.++....|+|.|...+....+|+|||+| .+|+...++.
T Consensus 151 ~~~~~~~~i~~~~~~ii~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r~ip~ai~~~~~ 230 (444)
T 3gia_A 151 EFFIVLVKLLILGLFIFAGLITIHPSYVIPDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISIL 230 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCGGGTSCCCSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcChhhcCCCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCcccchhHHHHHHHH
Confidence 433332222221122222222222222222 23344567888888889999999999999999999966 7999999999
Q ss_pred HHHHHHHhHHHHHHHhhcccccc--ccccccc-c---CcccHHHHHHHHHHHHHHHHHHhhhccHHHHHHHH-----hcC
Q 012371 268 YVLTLTLPSASAVYWAFGDMLLT--HSNAFSL-L---PRTGFRDTAVILMLIHQFITFGFACTPLYFVWEKF-----IGV 336 (465)
Q Consensus 268 ~~~~~y~~~g~~gy~~fG~~~~~--~~~il~~-l---~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~-----~~~ 336 (465)
.+.++|+...+......+.+... +++.+.. . -.++...+..+...++.+.+.--.....-+.+..+ +.+
T Consensus 231 ~~~~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~ 310 (444)
T 3gia_A 231 IVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKDGELPE 310 (444)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHSSCCS
T ss_pred HHHHHHHHHHHHHHhCCCHHHHhcccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 99999988766655554432100 0111110 1 01222234444444555444433333322222111 110
Q ss_pred ---CCCcchhhHHHhhhhHHHHHHHHHHhcCCchhhHHhhhhhhhhhhHHhhhhHHHHHHhcch
Q 012371 337 ---HNTKSTFKRALARLPVVIPIWFLAIIFPFFGPINSTVGSLLVSFTVYIIPALAHMITFAPA 397 (465)
Q Consensus 337 ---~~~~~~~~~~~~r~~~~~~~~~~A~~vp~~~~i~~lvGs~~~~~l~~ilP~l~~l~~~~~~ 397 (465)
+.+++...+-+.- ...++.+++. +.+++.+.++.+ .+..+.|.++.+.+++.||++
T Consensus 311 ~f~~~~~~~P~~a~~~--~~~~~~~~~~-~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~r~~~ 369 (444)
T 3gia_A 311 FFERKVWFKSTEGLYI--TSALGVLFAL-LFNMEGVASITS--AVFMVIYLFVILSHYILIDEV 369 (444)
T ss_dssp SCCTTSCCSCTHHHHH--HHHHHHHHHH-HSCHHHHHHHHH--HHHHHHHHHHHHHHHHTHHHH
T ss_pred HHhCCCCCCCcHHHHH--HHHHHHHHHH-HcCHHHHHHHHH--HHHHHHHHHHHHHHHHhhhcC
Confidence 1111112211111 1112222222 346777777743 356788899988888877654
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=99.43 E-value=1.6e-10 Score=119.87 Aligned_cols=343 Identities=13% Similarity=0.096 Sum_probs=175.2
Q ss_pred cccCCchhHHHHHHHhhhhhhhhchhHHHHHhhchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH--hhhhcccccccc
Q 012371 35 FWHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGLLSGILLQLFYGLMGSW-TAYLISILYVEYRT--RKEREKVDFRNH 111 (465)
Q Consensus 35 ~~~~~s~~~a~~~l~~~~iG~GiL~lP~a~~~~G~~~g~i~l~~~~~~~~~-s~~ll~~~~~~~~~--~~~~~~~~~~~~ 111 (465)
.+++.+.++..+..++.++| +.++|. .+..|.. .++..++.+++... ... ++.|... +.| +|
T Consensus 9 ~~r~l~~~~~~~l~~~~~ig--~~~~~~-~~~~G~~-~~~~~~i~~~~~~l~~al----~~ael~s~~~~P-~G------ 73 (511)
T 4djk_A 9 KAKQLTLLGFFAITASMVMA--VYEYPT-FATSGFS-LVFFLLLGGILWFIPVGL----CAAEMATVDGWE-EG------ 73 (511)
T ss_dssp ---CCCHHHHHHHTGGGGCC--GGGHHH-HHTTTTH-HHHHHHHHHHHTHHHHHH----HHHHHHTTSCC----------
T ss_pred cCccccHHHHHHHHHHHHHh--hchhHH-HHhhHHH-HHHHHHHHHHHHHHHHHH----HHHHHcccccCC-CC------
Confidence 44567889999988988886 567775 4667753 23333333332221 233 3356666 666 54
Q ss_pred cccHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh--hccCCchhh-h-HhHHHH--HhhhhccCCCcc
Q 012371 112 VIQWFEVLDGLLGKHWRNIGLFFNCTFLLFGSVIQLIACASNIYYI--NDNLDKRTW-T-YIFGAC--CATTVFIPSFHN 185 (465)
Q Consensus 112 ~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~--~~~~~~~~~-~-ii~~~v--~~pl~~l~~l~~ 185 (465)
......++.+||+.+++..+..++.......++....++.+.++ .+......| . ++..++ ++-+...+..+.
T Consensus 74 --G~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~in~~g~~~ 151 (511)
T 4djk_A 74 --GVFAWVSNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILKWPALNEDPITKTIAALIILWALALTQFGGTKY 151 (511)
T ss_dssp --CHHHHHHHHHCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTTCGGGTSCSSHHHHHHHHHHHHHHHHHHTCSSS
T ss_pred --ChhhhHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCcHHHHHHHHHHHHHHHHHHHhChHH
Confidence 66678889999999988888777766655555555555555554 333332222 1 111111 122223344555
Q ss_pred hhHHHHHHHHHH-HHHHHHHHHhhh---hcccCCCc----cCC-CCchhhHhHhHHHHHHHHhcCccchHhHhhhccCCc
Q 012371 186 YRIWSFLGLIMT-SFTAWYLTIASL---VHGQVEGV----KHS-GPTKMVLYFTGATNILYTFGGHAVTVEIMHAMWKPQ 256 (465)
Q Consensus 186 l~~~s~~~~~~~-~~~~~~~~~~~~---~~g~~~~~----~~~-~~~~~~~~~~a~~~~~faf~~~~~v~~i~~~mk~p~ 256 (465)
...+..+..... +...+.+++..+ ..+.+.+. +.. +.......+.++....|+|.|........+|+|||+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~a~E~k~P~ 231 (511)
T 4djk_A 152 TARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVNEMSNPG 231 (511)
T ss_dssp HHHHTHHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCTTSTTTTTTHHHHHHHHTTGGGGTGGGSSSSCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCcccchHHHHHHHHHHHHhhHHHHHHHHHhccCcc
Confidence 555544432221 111111111111 12221111 110 111112345667788999999999999999999996
Q ss_pred c-chHHHHHHHHHHHHHHHhHHHHHHHhhccccccccc--------cccccC--cccHHHHHHHHHHHHHHHHHHhhhc-
Q 012371 257 K-FKSIYLLATLYVLTLTLPSASAVYWAFGDMLLTHSN--------AFSLLP--RTGFRDTAVILMLIHQFITFGFACT- 324 (465)
Q Consensus 257 ~-~~~~~~~s~~~~~~~y~~~g~~gy~~fG~~~~~~~~--------il~~l~--~~~~~~~~~~~~~i~~~~s~pl~~~- 324 (465)
| .+|+...++..+.++|++..+.-....+++..+.++ +..+.+ ..+...+..+...++.+.+.--...
T Consensus 232 k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (511)
T 4djk_A 232 RDYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWTVRVISALLLLGVLAEIASWIVG 311 (511)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCCSSSTHHHHHHHHHSSSCSSCTTHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHeecCHhhccccchHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 799999999999999988777666666554321111 112222 2344556666666666655433332
Q ss_pred cHHHHH---H-HHh----cCCCCcchhhHHHhhhhHHHHHHHHHHhcCC--------chhhHHhhhhhhhhhhHHhhhhH
Q 012371 325 PLYFVW---E-KFI----GVHNTKSTFKRALARLPVVIPIWFLAIIFPF--------FGPINSTVGSLLVSFTVYIIPAL 388 (465)
Q Consensus 325 p~~~~~---~-~~~----~~~~~~~~~~~~~~r~~~~~~~~~~A~~vp~--------~~~i~~lvGs~~~~~l~~ilP~l 388 (465)
..|... + +.+ .+.++++.+.+-+.-. .....++.+.+++ ++.+.++.+ .+..+.|.+|.+
T Consensus 312 ~sR~l~a~ardg~lP~~~~~~~~~~~P~~ai~~~--~~~~~l~~~~~~~~~~~~~~~f~~l~~~~~--~~~~~~y~~~~~ 387 (511)
T 4djk_A 312 PSRGMYVTAQKNLLPAAFAKMNKNGVPVTLVISQ--LVITSIALIILTNTGGGNNMSFLIALALTV--VIYLCAYFMLFI 387 (511)
T ss_dssp HHHHTCHHHHGGGCSSSCCCCCSSSCCCHHHHHH--HHHHHHHHHHHHSSSSHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHccCCcccHHHHhcCCCCCcHHHHHHH--HHHHHHHHHHhccccchHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 222211 1 112 1112222222222111 1122222334454 333444432 245778888988
Q ss_pred HHHHHhcchh
Q 012371 389 AHMITFAPAA 398 (465)
Q Consensus 389 ~~l~~~~~~~ 398 (465)
.+++.+++++
T Consensus 388 ~~~~~r~~~~ 397 (511)
T 4djk_A 388 GYIVLVLKHP 397 (511)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHhCC
Confidence 8887776543
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=98.98 E-value=1.8e-07 Score=96.47 Aligned_cols=203 Identities=12% Similarity=0.026 Sum_probs=106.7
Q ss_pred chhHHHHHHHhhhhhhhhchhHHHHHh-hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccHHHH
Q 012371 40 SVYDAWFSCASNQVAQVLLTLPYSFSQ-LGLLSGILLQLFYGLMGSWTAYLISILYVEYRTRKEREKVDFRNHVIQWFEV 118 (465)
Q Consensus 40 s~~~a~~~l~~~~iG~GiL~lP~a~~~-~G~~~g~i~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~l 118 (465)
+.++-+..-+...++.+...+...+.. .++..+++.+++..++......++... ..| .| .++.++
T Consensus 28 ~~~~~~~~W~g~~~~i~~~~~Ga~~~~GLs~~~a~lai~lG~li~~~~~~l~~~~----G~~---~G-------l~~~v~ 93 (501)
T 2jln_A 28 GPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAVILLFFTQSA----AIR---WG-------INFTVA 93 (501)
T ss_dssp CHHHHHHHHHHHHCSTHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHTHH----HHH---HC-------CCHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHhHH----Hhh---cC-------CChhhh
Confidence 445555555555555555555444333 334444444444333333222222211 111 11 278999
Q ss_pred HHHhhchhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhc---cCC-chhhhHhHHHHHhhhhccCCCcchhHHHHHHH
Q 012371 119 LDGLLGKHWRNIGLFFNCTFLLFGSVIQLIACASNIYYIND---NLD-KRTWTYIFGACCATTVFIPSFHNYRIWSFLGL 194 (465)
Q Consensus 119 ~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~---~~~-~~~~~ii~~~v~~pl~~l~~l~~l~~~s~~~~ 194 (465)
.+..||+++..+..+...+.++|-........++.+..+.. ..+ ...+.+++.++.+++.+. .++.++++...+.
T Consensus 94 ~R~~FG~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~g~~~~~v~~~i~~~l~~~~~~~-G~~~i~~~~~~~~ 172 (501)
T 2jln_A 94 ARMPFGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLTGFTNLPLWIVIFGAIQVVTTFY-GITFIRWMNVFAS 172 (501)
T ss_dssp TTTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred hHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHH
Confidence 99999999999999888888888888777777877766532 233 344556666767776654 4666666666555
Q ss_pred HHHHHHHHHHHHhhhhcccC--CCc-cCCCCchhhHhHhHHHHH-HHHhcCccchHhHhhhccCCcc
Q 012371 195 IMTSFTAWYLTIASLVHGQV--EGV-KHSGPTKMVLYFTGATNI-LYTFGGHAVTVEIMHAMWKPQK 257 (465)
Q Consensus 195 ~~~~~~~~~~~~~~~~~g~~--~~~-~~~~~~~~~~~~~a~~~~-~faf~~~~~v~~i~~~mk~p~~ 257 (465)
...+...+.+.+..+.+... .+. +..+......++.++... .+.-....+.++..+.+|++++
T Consensus 173 p~~~i~~i~~~~~~l~~~g~~~~~~~~~~~~~~~~~f~~ai~~~~~~~~~~~~~~~DysRy~~~~~~ 239 (501)
T 2jln_A 173 PVLLAMGVYMVYLMLDGADVSLGEVMSMGGENPGMPFSTAIMIFVGGWIAVVVSIHDIVKECKVDPN 239 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCHHHHTTCCCSSCCSCHHHHHHHHHTTTHHHHTTTHHHHTTBCCCTT
T ss_pred HHHHHHHHHHHHHHHHhcCCcchhhhccCCccchHHHHHHHHHHHHHHHHHHhccCcccccCCCCcc
Confidence 44332222222222222111 000 111111112334433321 1211234668899999998877
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=97.76 E-value=0.046 Score=56.34 Aligned_cols=145 Identities=7% Similarity=-0.042 Sum_probs=76.9
Q ss_pred CCchhHHHHHHHhhhhhhhh-chhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccHH
Q 012371 38 GGSVYDAWFSCASNQVAQVL-LTLPYSFSQLGLLSGILLQLFYGLMGSWTAYLISILYVEYRTRKEREKVDFRNHVIQWF 116 (465)
Q Consensus 38 ~~s~~~a~~~l~~~~iG~Gi-L~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~ 116 (465)
+.+.+...+.+..+.+++.. +++|-...+.|+........ .++.....+..+.. .+++ .+..|..
T Consensus 21 ~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~~-~~~~~~i~~~~~~p---~~~~----------~~~~T~~ 86 (530)
T 3dh4_A 21 SLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWM-SAITLIIVGKYFLP---IFIE----------KGIYTIP 86 (530)
T ss_dssp CCCHHHHHHHHHHHHCSHHHHTHHHHHHHHTCGGGHHHHHH-HHHHHHHHHHHTHH---HHHH----------TTCCSHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHH-HHHHHHHHHHHHHH---HHHH----------cCCccHH
Confidence 45677777778777777654 88998888888753221111 11111111222221 1111 1345999
Q ss_pred HHHHHhhchhhHHHHHHHHHH-HHHHHHHHHHHHhHhhhhhhhccCCchhhhHhHHHHHhhhhccCCCcchhHHHHHHHH
Q 012371 117 EVLDGLLGKHWRNIGLFFNCT-FLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLI 195 (465)
Q Consensus 117 ~l~~~~~G~~~~~~~~~~~~~-~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~ii~~~v~~pl~~l~~l~~l~~~s~~~~~ 195 (465)
|.-++-||++.+.+..+...+ +.+..+.+.+...+..++.+.+ ++.....++.+++....+...-++...+...+-.+
T Consensus 87 e~l~~Rfg~~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~G-i~~~~~i~i~~~i~~~Yt~~GGl~aV~~TD~iQ~~ 165 (530)
T 3dh4_A 87 EFVEKRFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETILG-IPLMYSILGLALFALVYSIYGGLSAVVWTDVIQVF 165 (530)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHHTTC------CCSHHHHHHH
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 999999999988876655332 2222222222223444444432 45555556666666777777778887777766655
Q ss_pred HH
Q 012371 196 MT 197 (465)
Q Consensus 196 ~~ 197 (465)
..
T Consensus 166 im 167 (530)
T 3dh4_A 166 FL 167 (530)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 6
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=97.55 E-value=0.11 Score=54.14 Aligned_cols=145 Identities=7% Similarity=-0.041 Sum_probs=76.1
Q ss_pred CCchhHHHHHHHhhhhhhhh-chhHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccHH
Q 012371 38 GGSVYDAWFSCASNQVAQVL-LTLPYSFSQLGLLSGILLQLFYGLMGSWTAYLISILYVEYRTRKEREKVDFRNHVIQWF 116 (465)
Q Consensus 38 ~~s~~~a~~~l~~~~iG~Gi-L~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~ 116 (465)
+.+.+...+.+..+.+++.. ++.|-...+.|+........ .++........+.. .++ | .+..|..
T Consensus 50 ~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~~G~~~~~~~~~-~~~~~~~~~~~~~p---~~~-r---------~~~~T~~ 115 (593)
T 2xq2_A 50 SLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWM-SAITLIIVGKYFLP---IFI-E---------KGIYTIP 115 (593)
T ss_dssp -CCHHHHHHHHHGGGSSHHHHHHHHHHHHHTCGGGGHHHHH-HHHHHHHHHHTHHH---HHH-H---------TTCCSHH
T ss_pred CCCHHHHHHHHHHHHhcHHHHhhHhHHHHHcCHHHHHHHHH-HHHHHHHHHHHHHH---HHH-h---------CCCCCcH
Confidence 34567777777777776655 78998877888643211111 11111111222221 111 1 1345999
Q ss_pred HHHHHhhchhhHHHHHHHHHH-HHHHHHHHHHHHhHhhhhhhhccCCchhhhHhHHHHHhhhhccCCCcchhHHHHHHHH
Q 012371 117 EVLDGLLGKHWRNIGLFFNCT-FLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLI 195 (465)
Q Consensus 117 ~l~~~~~G~~~~~~~~~~~~~-~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~ii~~~v~~pl~~l~~l~~l~~~s~~~~~ 195 (465)
|.-++-||++.+.+..+...+ +.+......+...+..++.+.+ ++.....++.+++++..+.+.-+++..+...+-.+
T Consensus 116 e~l~~Rfg~~~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~G-i~~~~~i~i~~~i~~~Yt~~GGl~av~~TD~iQ~i 194 (593)
T 2xq2_A 116 EFVEKRFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETILG-IPLMYSILGLALFALVYSIYGGLSAVVWTDVIQVF 194 (593)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHTTC---CCHHHHHHHH
T ss_pred HHHHHHccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ccHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 999999999888776554332 2222222222233444444432 44444455566666777777777877777665554
Q ss_pred HH
Q 012371 196 MT 197 (465)
Q Consensus 196 ~~ 197 (465)
..
T Consensus 195 im 196 (593)
T 2xq2_A 195 FL 196 (593)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 7
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=23.49 E-value=5.7e+02 Score=25.58 Aligned_cols=30 Identities=20% Similarity=0.260 Sum_probs=24.8
Q ss_pred CchhHHHHHHHhhhhhhh-hchhHHHHHhhc
Q 012371 39 GSVYDAWFSCASNQVAQV-LLTLPYSFSQLG 68 (465)
Q Consensus 39 ~s~~~a~~~l~~~~iG~G-iL~lP~a~~~~G 68 (465)
+|..+-.+..+.+.+|.| +.=.||-..+-|
T Consensus 9 ~sr~~FiLa~~G~AVGLGNiWRFPyl~~~nG 39 (519)
T 2a65_A 9 ATRLGLILAMAGNAVGLGNFLRFPVQAAENG 39 (519)
T ss_dssp SCHHHHHHHHHHHHSSHHHHTHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHhcccHHHHHHHHHHHcC
Confidence 566788899999999999 467999877766
No 8
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=19.62 E-value=4.7e+02 Score=23.26 Aligned_cols=54 Identities=22% Similarity=0.318 Sum_probs=26.7
Q ss_pred HHHHHHHhhh-ccHHHHHHHHhcCCCCcchhhHHHhhhhHHHHHHHHHHhcCCchhhHHh
Q 012371 314 HQFITFGFAC-TPLYFVWEKFIGVHNTKSTFKRALARLPVVIPIWFLAIIFPFFGPINST 372 (465)
Q Consensus 314 ~~~~s~pl~~-~p~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~A~~vp~~~~i~~l 372 (465)
.++.++.+.. .|+...+....+.-+. ...+---|.+++....+.|+.-| |+++-
T Consensus 155 ~l~l~fGl~FelPvi~~~L~~~Giv~~--~~l~~~Rr~~iv~~~v~aAiiTP---D~~sq 209 (249)
T 4b4a_A 155 KLVVAFGIAFEMPIVLYVLQKAGVITP--EQLASFRKYFIVIAFVIGAIIAP---DVSTQ 209 (249)
T ss_dssp HHHHHHHHHTSHHHHHHHHHHTTSSCH--HHHHHHHHHHHHHHHHHHHHHCS---SHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcCH--HHHHHHhHHHHHHHHHHHHHHCC---cHHHH
Confidence 3333443443 6666666566553222 12222244555666666667788 44443
No 9
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=12.06 E-value=7.5e+02 Score=21.90 Aligned_cols=94 Identities=16% Similarity=0.135 Sum_probs=51.7
Q ss_pred CcccHHHHHHHHHHHHHHHHHHhhhccHHHHHHHH---hcCCCCcchhhHHHhhhhHHHHHHHHHHh-------------
Q 012371 299 PRTGFRDTAVILMLIHQFITFGFACTPLYFVWEKF---IGVHNTKSTFKRALARLPVVIPIWFLAII------------- 362 (465)
Q Consensus 299 ~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~---~~~~~~~~~~~~~~~r~~~~~~~~~~A~~------------- 362 (465)
+.+.+..-.++.....++.+.|+. ..|.|.=. +.+++++....-......+...-...+..
T Consensus 57 ~~e~f~~~lkvs~~~g~~~a~P~i---lyQiw~Fi~PgLy~~Err~~~~~~~~s~~LF~~G~~f~Yf~v~P~~~~Fl~~~ 133 (249)
T 4b4a_A 57 PTEPLFILIKISLAVGFIIASPVI---LYQFWRFIEPALYSHEKRAFIPLLLGSILLFMLGALFAYFIVLPLALKFLLGL 133 (249)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHTTTTSCCCTTTTHHHHHHHHHHHHHHHHHHHHTHHHHHHHTTTCS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345577788999999999999998 44544322 22344432222222333332222223321
Q ss_pred -------cC--CchhhHHhhhhhh-hhhhHHhhhhHHHHHHhc
Q 012371 363 -------FP--FFGPINSTVGSLL-VSFTVYIIPALAHMITFA 395 (465)
Q Consensus 363 -------vp--~~~~i~~lvGs~~-~~~l~~ilP~l~~l~~~~ 395 (465)
.| ++++.++++-.+. ..-++|-+|.++++-.+-
T Consensus 134 ~~~~i~~~~~~~i~~Yl~fv~~l~l~fGl~FelPvi~~~L~~~ 176 (249)
T 4b4a_A 134 GFTQLLATPYLSVDMYISFVLKLVVAFGIAFEMPIVLYVLQKA 176 (249)
T ss_dssp SSTTSSSSTTEEHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHT
T ss_pred chhhhHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 13 5555556554443 345778899888775543
No 10
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=7.89 E-value=4.9e+02 Score=17.62 Aligned_cols=29 Identities=14% Similarity=0.003 Sum_probs=13.7
Q ss_pred hccCCcc--chHHHHHHHHHHHHHHHhHHHHHHHh
Q 012371 251 AMWKPQK--FKSIYLLATLYVLTLTLPSASAVYWA 283 (465)
Q Consensus 251 ~mk~p~~--~~~~~~~s~~~~~~~y~~~g~~gy~~ 283 (465)
--++|++ |.++...+... ..++|+.||..
T Consensus 21 ~~~KPd~~Ef~~iak~~~iG----~~i~G~iGf~I 51 (61)
T 3mp7_B 21 VTKKPNWATYKRAAKITGLG----IILIGLIGMLI 51 (61)
T ss_dssp HSCCCCTTHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 3456643 66655433222 23345666543
Done!