Query 012371
Match_columns 465
No_of_seqs 151 out of 1651
Neff 8.9
Searched_HMMs 13730
Date Mon Mar 25 08:09:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012371.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/012371hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2a65a1 f.54.1.1 (A:5-513) Na( 63.5 59 0.0043 30.2 38.2 30 39-68 5-35 (509)
2 d1dsqa_ g.40.1.1 (A:) Nucleic 39.6 4.2 0.00031 20.6 0.6 9 456-464 4-12 (26)
3 d2axtm1 f.23.35.1 (M:1-36) Pho 8.2 1.4E+02 0.01 16.4 2.4 21 379-399 11-31 (36)
4 d1rh5b_ f.23.28.1 (B:) Preprot 7.8 2.1E+02 0.015 17.6 3.5 30 251-284 14-45 (56)
5 d1oedc_ f.36.1.1 (C:) Acetylch 7.1 1.9E+02 0.014 23.3 4.3 40 350-389 41-80 (260)
6 d1r3jc_ f.14.1.1 (C:) Potassiu 6.8 3.3E+02 0.024 18.3 5.0 21 307-327 67-87 (103)
7 d1nc8a_ g.40.1.1 (A:) HIV nucl 4.9 1.1E+02 0.0078 16.0 0.7 10 455-464 7-16 (29)
8 d2e74f1 f.23.25.1 (F:1-32) Pet 4.7 2.7E+02 0.019 14.4 2.5 20 55-76 8-27 (32)
9 d1oedb_ f.36.1.1 (B:) Acetylch 4.5 2.9E+02 0.021 21.9 3.9 37 351-387 42-78 (250)
10 d3b2ua2 g.3.9.1 (A:481-502) EG 4.4 1.2E+02 0.0086 15.1 0.6 7 456-462 18-24 (26)
No 1
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=63.53 E-value=59 Score=30.19 Aligned_cols=30 Identities=17% Similarity=0.171 Sum_probs=23.6
Q ss_pred CchhHHHHHHHhhhhhhhhch-hHHHHHhhc
Q 012371 39 GSVYDAWFSCASNQVAQVLLT-LPYSFSQLG 68 (465)
Q Consensus 39 ~s~~~a~~~l~~~~iG~GiL~-lP~a~~~~G 68 (465)
+|..+.++..+...+|.|-+= .||-..+-|
T Consensus 5 ~s~~~fila~~g~avGlGNiWrFPyl~~~nG 35 (509)
T d2a65a1 5 ATRLGLILAMAGNAVGLGNFLRFPVQAAENG 35 (509)
T ss_dssp SCHHHHHHHHHHHHSSHHHHTHHHHHHHHTT
T ss_pred CChHHHHHHHHHHHhcccHHHhhhHHHHhcC
Confidence 566788899999999998754 998865543
No 2
>d1dsqa_ g.40.1.1 (A:) Nucleic acid binding protein p14 {Mouse mammary tumor virus [TaxId: 11757]}
Probab=39.56 E-value=4.2 Score=20.57 Aligned_cols=9 Identities=22% Similarity=0.851 Sum_probs=7.1
Q ss_pred ccccCCCCC
Q 012371 456 KCYQCPPHK 464 (465)
Q Consensus 456 ~~~~c~~~~ 464 (465)
-||+|++.+
T Consensus 4 vcfscgktg 12 (26)
T d1dsqa_ 4 VCFSCGKTG 12 (26)
T ss_dssp BCTTTCCBS
T ss_pred EEEecCCcc
Confidence 499999754
No 3
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=8.24 E-value=1.4e+02 Score=16.40 Aligned_cols=21 Identities=10% Similarity=0.335 Sum_probs=13.4
Q ss_pred hhhHHhhhhHHHHHHhcchhh
Q 012371 379 SFTVYIIPALAHMITFAPAAA 399 (465)
Q Consensus 379 ~~l~~ilP~l~~l~~~~~~~~ 399 (465)
+.+..+.|..|.+.++-+..+
T Consensus 11 t~LFilvPt~FLliLyvqT~s 31 (36)
T d2axtm1 11 TALFVLVPSVFLIILYVQTES 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHhheeecc
Confidence 455556688887777655443
No 4
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=7.83 E-value=2.1e+02 Score=17.62 Aligned_cols=30 Identities=13% Similarity=0.112 Sum_probs=15.2
Q ss_pred hccCCc--cchHHHHHHHHHHHHHHHhHHHHHHHhh
Q 012371 251 AMWKPQ--KFKSIYLLATLYVLTLTLPSASAVYWAF 284 (465)
Q Consensus 251 ~mk~p~--~~~~~~~~s~~~~~~~y~~~g~~gy~~f 284 (465)
-.++|+ .|+++..++-.. ..++|+.||..+
T Consensus 14 ~~~KP~~~Ef~~ia~v~~iG----~~i~G~IGf~I~ 45 (56)
T d1rh5b_ 14 VLKKPTKDEYLAVAKVTALG----ISLLGIIGYIIH 45 (56)
T ss_dssp SEECCCHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 345564 366655433222 334577777655
No 5
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=7.12 E-value=1.9e+02 Score=23.30 Aligned_cols=40 Identities=10% Similarity=0.131 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHHhcCCchhhHHhhhhhhhhhhHHhhhhHH
Q 012371 350 LPVVIPIWFLAIIFPFFGPINSTVGSLLVSFTVYIIPALA 389 (465)
Q Consensus 350 ~~~~~~~~~~A~~vp~~~~i~~lvGs~~~~~l~~ilP~l~ 389 (465)
.++.+....++-.+|.-++-+.++|-.....+.++.=+++
T Consensus 41 Ls~~vf~~~v~~~lP~tS~~vPli~~y~~~~~~~v~~s~~ 80 (260)
T d1oedc_ 41 LAQAVFLLLTSQRLPETALAVPLIGKYLMFIMSLVTGVIV 80 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHHHHH
Confidence 4445566677778887777777777777666666654443
No 6
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=6.78 E-value=3.3e+02 Score=18.32 Aligned_cols=21 Identities=0% Similarity=-0.238 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHhhhccHH
Q 012371 307 AVILMLIHQFITFGFACTPLY 327 (465)
Q Consensus 307 ~~~~~~i~~~~s~pl~~~p~~ 327 (465)
.+++..+..+....+...+.-
T Consensus 67 gr~~~~~~~~~Gi~~~~~~~~ 87 (103)
T d1r3jc_ 67 GRCVAVVVMVAGITSFGLVTA 87 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444333333
No 7
>d1nc8a_ g.40.1.1 (A:) HIV nucleocapsid {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=4.89 E-value=1.1e+02 Score=15.99 Aligned_cols=10 Identities=20% Similarity=0.899 Sum_probs=6.9
Q ss_pred cccccCCCCC
Q 012371 455 TKCYQCPPHK 464 (465)
Q Consensus 455 ~~~~~c~~~~ 464 (465)
-.||-|++.+
T Consensus 7 ikCfNCGkeG 16 (29)
T d1nc8a_ 7 IRCWNCGKEG 16 (29)
T ss_dssp CBCTTTSCBS
T ss_pred eEeecCCccc
Confidence 3688888654
No 8
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=4.73 E-value=2.7e+02 Score=14.36 Aligned_cols=20 Identities=35% Similarity=0.539 Sum_probs=10.2
Q ss_pred hhhchhHHHHHhhchhHHHHHH
Q 012371 55 QVLLTLPYSFSQLGLLSGILLQ 76 (465)
Q Consensus 55 ~GiL~lP~a~~~~G~~~g~i~l 76 (465)
+.+|+...-| .||..|..++
T Consensus 8 aa~lsfglif--vgwglgalll 27 (32)
T d2e74f1 8 AALLSFGLIF--VGWGLGVLLL 27 (32)
T ss_dssp HHHHHHHHHH--HHHHHHHHHH
T ss_pred HHHHHhhHHH--HHhHHHHHHh
Confidence 3444444443 4666666554
No 9
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=4.55 E-value=2.9e+02 Score=21.87 Aligned_cols=37 Identities=14% Similarity=0.069 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHhcCCchhhHHhhhhhhhhhhHHhhhh
Q 012371 351 PVVIPIWFLAIIFPFFGPINSTVGSLLVSFTVYIIPA 387 (465)
Q Consensus 351 ~~~~~~~~~A~~vp~~~~i~~lvGs~~~~~l~~ilP~ 387 (465)
++.+....++..+|..++.+-++|-.....+.++.=+
T Consensus 42 ~~~~~~~~v~~~~P~~s~~~p~i~~~~~~~~~~~~~~ 78 (250)
T d1oedb_ 42 AVTVFLLLLADKVPETSLSVPIIIRYLMFIMILVAFS 78 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcCcchHHHHHHHHHHHHHHHH
Confidence 3445555666677766666666666665555555433
No 10
>d3b2ua2 g.3.9.1 (A:481-502) EGF receptor Cys-rich domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.37 E-value=1.2e+02 Score=15.06 Aligned_cols=7 Identities=29% Similarity=1.179 Sum_probs=3.3
Q ss_pred ccccCCC
Q 012371 456 KCYQCPP 462 (465)
Q Consensus 456 ~~~~c~~ 462 (465)
+|++|..
T Consensus 18 dcvsc~~ 24 (26)
T d3b2ua2 18 DCVSCXX 24 (26)
T ss_dssp GBSCC--
T ss_pred ceeEecc
Confidence 5666654
Done!