Query 012372
Match_columns 465
No_of_seqs 215 out of 439
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 08:10:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012372.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012372hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cte_A Vigilin; K homology typ 99.6 7.6E-15 2.6E-19 123.0 8.9 74 150-224 13-87 (94)
2 2ctl_A Vigilin; K homology typ 99.5 8.7E-14 3E-18 117.5 8.7 72 152-224 15-90 (97)
3 2ctj_A Vigilin; K homology typ 99.5 5.1E-14 1.7E-18 118.9 7.0 72 151-223 14-87 (95)
4 1vig_A Vigilin; RNA-binding pr 99.5 6.3E-14 2.1E-18 111.8 6.6 67 152-219 3-70 (71)
5 2dgr_A Ring finger and KH doma 99.5 1E-13 3.5E-18 114.4 7.7 71 150-221 6-76 (83)
6 2ctk_A Vigilin; K homology typ 99.4 2E-13 7E-18 116.7 8.9 69 153-222 16-85 (104)
7 2ctm_A Vigilin; K homology typ 99.4 1.9E-13 6.5E-18 115.1 8.2 74 150-224 13-88 (95)
8 2ctf_A Vigilin; K homology typ 99.3 3.9E-12 1.3E-16 108.5 10.1 70 152-224 25-95 (102)
9 1zzk_A Heterogeneous nuclear r 99.3 3E-12 1E-16 104.3 8.4 72 150-222 3-77 (82)
10 2vfk_A AKAP18 delta; APO, hydr 99.3 7.2E-12 2.5E-16 115.2 11.7 105 336-445 38-144 (205)
11 2opv_A KHSRP protein; KH domai 99.3 4.9E-12 1.7E-16 103.7 7.1 67 153-220 13-84 (85)
12 1dtj_A RNA-binding neurooncolo 99.3 3.9E-12 1.3E-16 101.6 5.7 68 153-221 2-75 (76)
13 2axy_A Poly(RC)-binding protei 99.3 4.2E-12 1.4E-16 101.6 5.8 70 151-221 2-72 (73)
14 1wvn_A Poly(RC)-binding protei 99.3 3.6E-12 1.2E-16 103.7 5.3 72 150-222 2-76 (82)
15 1x4m_A FAR upstream element bi 99.2 5.6E-12 1.9E-16 105.4 5.7 70 151-221 12-86 (94)
16 1j5k_A Heterogeneous nuclear r 99.2 7.2E-12 2.5E-16 103.7 6.2 72 150-222 10-84 (89)
17 2p2r_A Poly(RC)-binding protei 99.2 6.2E-12 2.1E-16 100.8 5.5 69 152-221 3-74 (76)
18 1x4n_A FAR upstream element bi 99.2 1.3E-11 4.5E-16 102.8 7.6 73 151-224 12-87 (92)
19 1ec6_A RNA-binding protein NOV 99.2 8E-12 2.7E-16 102.7 5.9 70 153-223 2-77 (87)
20 1we8_A Tudor and KH domain con 99.2 1.5E-11 5.2E-16 104.6 7.0 70 152-222 13-87 (104)
21 2hh3_A KH-type splicing regula 99.2 3E-11 1E-15 103.7 7.2 71 153-224 10-83 (106)
22 2cpq_A FragIle X mental retard 99.2 1.2E-11 4E-16 104.3 3.9 68 150-219 11-79 (91)
23 2jzx_A Poly(RC)-binding protei 99.1 4.3E-11 1.5E-15 107.1 7.0 106 152-258 3-117 (160)
24 2hh2_A KH-type splicing regula 99.1 2.7E-11 9.4E-16 103.7 4.8 66 155-221 8-79 (107)
25 3krm_A Insulin-like growth fac 99.1 1.3E-10 4.4E-15 104.3 8.6 105 153-258 2-113 (163)
26 2anr_A Neuro-oncological ventr 99.1 1.2E-10 4E-15 106.2 6.3 108 150-258 2-132 (178)
27 1k1g_A SF1-BO isoform; splicin 99.1 1.8E-10 6.1E-15 102.5 6.7 71 151-221 4-99 (131)
28 2jvz_A KH type-splicing, FAR u 99.1 2.2E-10 7.4E-15 102.4 7.1 104 154-258 2-119 (164)
29 1j4w_A FUSE binding protein; s 99.1 2.4E-10 8.2E-15 103.9 7.5 105 153-258 2-132 (174)
30 3n89_A Defective in GERM LINE 99.0 1.9E-10 6.6E-15 118.1 7.1 67 151-218 27-103 (376)
31 3krm_A Insulin-like growth fac 99.0 5.6E-10 1.9E-14 100.1 8.5 72 152-224 83-159 (163)
32 2jvz_A KH type-splicing, FAR u 98.9 4.1E-10 1.4E-14 100.6 4.7 68 154-222 91-161 (164)
33 2jzx_A Poly(RC)-binding protei 98.9 9.8E-10 3.4E-14 98.3 6.6 69 152-221 87-159 (160)
34 2yqr_A KIAA0907 protein; struc 98.9 1.4E-09 4.8E-14 95.5 7.3 69 154-222 12-100 (119)
35 2anr_A Neuro-oncological ventr 98.8 1.7E-09 5.8E-14 98.5 4.6 68 153-221 103-175 (178)
36 1j4w_A FUSE binding protein; s 98.8 2.1E-09 7.1E-14 97.7 4.9 66 153-219 103-174 (174)
37 3n89_A Defective in GERM LINE 98.7 7.5E-09 2.6E-13 106.3 6.1 71 148-219 180-259 (376)
38 3u1k_A Polyribonucleotide nucl 98.7 4.6E-09 1.6E-13 114.1 4.3 64 153-219 566-629 (630)
39 4aid_A Polyribonucleotide nucl 98.6 3.7E-09 1.3E-13 116.4 0.8 81 154-238 570-659 (726)
40 2qnd_A FMR1 protein; KH domain 98.6 2.2E-08 7.5E-13 89.7 5.1 65 156-221 69-142 (144)
41 2e3u_A PH-DIM2P, hypothetical 98.6 4.3E-08 1.5E-12 94.0 6.5 63 155-219 35-101 (219)
42 1vgj_A Hypothetical protein PH 98.6 4.7E-07 1.6E-11 81.4 11.8 92 336-437 33-131 (184)
43 2bl5_A MGC83862 protein, quaki 98.4 2.6E-07 9E-12 83.3 5.2 65 155-219 3-99 (140)
44 1iuh_A 2'-5' RNA ligase; riken 98.0 3.6E-05 1.2E-09 70.8 11.8 81 336-427 32-112 (198)
45 3cdi_A Polynucleotide phosphor 98.0 9.2E-07 3.2E-11 97.5 0.0 81 154-238 560-649 (723)
46 2qnd_A FMR1 protein; KH domain 97.9 3.4E-06 1.2E-10 75.4 3.1 94 152-258 2-95 (144)
47 2e3u_A PH-DIM2P, hypothetical 97.9 1.1E-05 3.8E-10 77.3 6.6 66 151-221 115-191 (219)
48 2d4g_A Hypothetical protein BS 97.8 1.8E-05 6.3E-10 70.2 5.8 81 343-435 34-119 (171)
49 1e3p_A Guanosine pentaphosphat 97.8 9.7E-07 3.3E-11 97.8 -4.4 80 155-238 599-689 (757)
50 1tua_A Hypothetical protein AP 97.5 0.00011 3.6E-09 69.3 5.5 63 153-220 87-159 (191)
51 1tua_A Hypothetical protein AP 97.3 0.00026 9E-09 66.6 6.1 64 155-220 5-72 (191)
52 3v69_A Protein filia; RNA-bind 96.9 0.0015 5E-08 58.8 6.5 68 156-224 58-127 (140)
53 1jh6_A Cyclic phosphodiesteras 96.5 0.0019 6.6E-08 59.1 4.7 83 339-436 38-124 (189)
54 2z0s_A Probable exosome comple 84.6 2 6.8E-05 40.9 7.2 61 156-219 150-210 (235)
55 2ja9_A Exosome complex exonucl 77.2 1.7 5.9E-05 40.0 3.7 58 157-217 94-152 (175)
56 2ba0_A Archeal exosome RNA bin 76.0 3.7 0.00013 39.1 5.8 59 156-218 138-196 (229)
57 2cxc_A NUSA; transcription ter 75.1 1.7 5.9E-05 39.0 3.0 37 154-190 36-72 (144)
58 2fsq_A ATU0111 protein; alpha- 74.0 1.6 5.3E-05 42.4 2.6 96 335-445 76-187 (243)
59 2cxc_A NUSA; transcription ter 66.3 1.4 4.6E-05 39.7 0.3 38 152-189 101-138 (144)
60 2nn6_G Exosome complex exonucl 63.1 1.9 6.6E-05 42.7 0.7 57 157-216 213-269 (289)
61 1go3_E DNA-directed RNA polyme 61.7 2.1 7.3E-05 38.8 0.7 35 153-190 6-52 (187)
62 2je6_I RRP4, exosome complex R 56.5 1.3 4.5E-05 42.9 -1.8 55 156-213 157-211 (251)
63 2asb_A Transcription elongatio 49.5 9.6 0.00033 37.2 3.1 38 154-191 184-221 (251)
64 1hh2_P NUSA, N utilization sub 44.5 12 0.00043 37.9 3.1 39 152-190 301-339 (344)
65 1k0r_A NUSA; two component arr 42.2 14 0.00047 37.9 3.0 39 153-191 306-344 (366)
66 2pt7_G HP1451, hypothetical pr 36.8 16 0.00053 33.0 2.2 60 155-224 34-101 (152)
67 1wh9_A 40S ribosomal protein S 32.8 16 0.00055 30.2 1.5 30 156-185 37-66 (92)
68 1j26_A Immature colon carcinom 30.4 22 0.00074 30.6 1.9 30 195-224 75-108 (112)
69 3iev_A GTP-binding protein ERA 28.1 29 0.00099 33.4 2.6 27 153-179 239-266 (308)
70 1wf3_A GTP-binding protein; GT 25.3 28 0.00096 33.6 2.0 27 154-180 230-257 (301)
71 3eik_A Tata-box-binding protei 23.0 64 0.0022 30.8 3.9 31 194-224 186-217 (218)
72 1ytb_A Protein (tata binding p 21.2 76 0.0026 29.2 3.9 30 194-223 148-178 (180)
73 2jva_A Peptidyl-tRNA hydrolase 21.0 1.1E+02 0.0037 26.1 4.5 30 195-224 67-100 (108)
No 1
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.56 E-value=7.6e-15 Score=122.98 Aligned_cols=74 Identities=26% Similarity=0.402 Sum_probs=68.5
Q ss_pred CCCCeEEEEEeCcceeccccCCCChhHHHHHHHhCcEEEcCCCCC-CCcEEEEecCHHHHHHHHHHHHHHHHHHhh
Q 012372 150 SAERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK-EDSIIIEGNSTDSVAKASEKIQAIIAEAVE 224 (465)
Q Consensus 150 ~~~k~~~sI~VP~~~~r~IIGkgG~tiK~IEeETgtkI~IPr~~~-sg~I~ItG~ske~V~~A~~rI~~Iv~e~~k 224 (465)
..++++..+.||+++|++|||+||+|||+|+++|||+|+||+.++ ++.|+|+|+ .+++++|+++|+.++.+..+
T Consensus 13 l~~~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~~~~~~V~I~G~-~e~v~~A~~~I~~i~~~~~~ 87 (94)
T 2cte_A 13 LQTQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPDDPSNQIKITGT-KEGIEKARHEVLLISAEQDK 87 (94)
T ss_dssp CCSCEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTTSSCCEEEEEEC-HHHHHHHHHHHHHHHHHHHT
T ss_pred hCCceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCCCCCCCeEEEEEC-HHHHHHHHHHHHHHhhcccc
Confidence 467899999999999999999999999999999999999998654 589999998 99999999999999998655
No 2
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.47 E-value=8.7e-14 Score=117.49 Aligned_cols=72 Identities=26% Similarity=0.377 Sum_probs=65.5
Q ss_pred CCeEEEEEeCcceeccccCCCChhHHHHHHHhCcEEEcCCCCC----CCcEEEEecCHHHHHHHHHHHHHHHHHHhh
Q 012372 152 ERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK----EDSIIIEGNSTDSVAKASEKIQAIIAEAVE 224 (465)
Q Consensus 152 ~k~~~sI~VP~~~~r~IIGkgG~tiK~IEeETgtkI~IPr~~~----sg~I~ItG~ske~V~~A~~rI~~Iv~e~~k 224 (465)
..++.++.||+++|+.|||+||++||+|+++|||+|+||..++ +..|+|+|+ ++++.+|+++|+.|+.+...
T Consensus 15 ~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~~~~~~~~V~I~G~-~e~v~~A~~~I~~iv~e~e~ 90 (97)
T 2ctl_A 15 RSFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITGY-EKNTEAARDAILRIVGELEQ 90 (97)
T ss_dssp TTCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTTCSSCSSEEEEESC-HHHHHHHHHHHHHHHHHHHH
T ss_pred cceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCCCCCCccEEEEEeC-HHHHHHHHHHHHHHHHHHHh
Confidence 4689999999999999999999999999999999999998764 358999997 89999999999999988543
No 3
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.47 E-value=5.1e-14 Score=118.88 Aligned_cols=72 Identities=25% Similarity=0.406 Sum_probs=64.7
Q ss_pred CCCeEEEEEeCcceeccccCCCChhHHHHHHHh-CcEEEcCCCCC-CCcEEEEecCHHHHHHHHHHHHHHHHHHh
Q 012372 151 AERHSLSVEVGASVIRFIKGKEGSTQKKFEKEM-GVKIILPSSKK-EDSIIIEGNSTDSVAKASEKIQAIIAEAV 223 (465)
Q Consensus 151 ~~k~~~sI~VP~~~~r~IIGkgG~tiK~IEeET-gtkI~IPr~~~-sg~I~ItG~ske~V~~A~~rI~~Iv~e~~ 223 (465)
....+.++.||+++|++|||+||++||+|+++| ||+|+||..++ ++.|+|+|+.. +|++|+++|+.|+.+..
T Consensus 14 ~~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~g~~~~~V~I~G~~~-~v~~A~~~I~~iv~e~e 87 (95)
T 2ctj_A 14 ANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEGSGSDTVVIRGPSS-DVEKAKKQLLHLAEEKQ 87 (95)
T ss_dssp CSSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCTTTTCCEEEEESCHH-HHHHHHHHHHHHHHHHS
T ss_pred hhcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCCCCCcceEEEEcCHH-HHHHHHHHHHHHHhhhh
Confidence 455678999999999999999999999999999 99999998764 46899999865 99999999999999854
No 4
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.46 E-value=6.3e-14 Score=111.78 Aligned_cols=67 Identities=18% Similarity=0.401 Sum_probs=59.8
Q ss_pred CCeEEEEEeCcceeccccCCCChhHHHHHHHhCcEEEcCCCCC-CCcEEEEecCHHHHHHHHHHHHHHH
Q 012372 152 ERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK-EDSIIIEGNSTDSVAKASEKIQAII 219 (465)
Q Consensus 152 ~k~~~sI~VP~~~~r~IIGkgG~tiK~IEeETgtkI~IPr~~~-sg~I~ItG~ske~V~~A~~rI~~Iv 219 (465)
+-.+.++.||+++|+.|||+||+++|+|+++|||+|+||..++ ++.|+|+|+ .+++++|+++|+.++
T Consensus 3 ~~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g~~~~~V~I~G~-~~~v~~A~~~I~~i~ 70 (71)
T 1vig_A 3 RMDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDSEKSNLIRIEGD-PQGVQQAKRELLELA 70 (71)
T ss_dssp CCEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCCCSSSEEEEEEES-SHHHHHHHHHHHHTC
T ss_pred ceEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCCCCcccEEEEEcC-HHHHHHHHHHHHHHh
Confidence 3467899999999999999999999999999999999997653 458999998 689999999998764
No 5
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=1e-13 Score=114.35 Aligned_cols=71 Identities=27% Similarity=0.436 Sum_probs=64.5
Q ss_pred CCCCeEEEEEeCcceeccccCCCChhHHHHHHHhCcEEEcCCCCCCCcEEEEecCHHHHHHHHHHHHHHHHH
Q 012372 150 SAERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAIIAE 221 (465)
Q Consensus 150 ~~~k~~~sI~VP~~~~r~IIGkgG~tiK~IEeETgtkI~IPr~~~sg~I~ItG~ske~V~~A~~rI~~Iv~e 221 (465)
..++.+..+.||.+++++||||||+|||+|+++|||+|+||+.+++..|+|+|. .+++++|+++|+.++..
T Consensus 6 ~~~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~~~~~~v~ItG~-~e~v~~A~~~I~~~i~~ 76 (83)
T 2dgr_A 6 SGGQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGRDKEPVFAVTGM-PENVDRAREEIEAHITL 76 (83)
T ss_dssp SCCSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCSSSCCEEEEEEC-TTTHHHHHHHHHHHHHS
T ss_pred CCCceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCCCCCCeEEEEcC-HHHHHHHHHHHHHHHhc
Confidence 346789999999999999999999999999999999999998777778999996 58999999999997654
No 6
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.44 E-value=2e-13 Score=116.67 Aligned_cols=69 Identities=26% Similarity=0.412 Sum_probs=63.6
Q ss_pred CeEEEEEeCcceeccccCCCChhHHHHHHHhCcEEEcCCCCC-CCcEEEEecCHHHHHHHHHHHHHHHHHH
Q 012372 153 RHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK-EDSIIIEGNSTDSVAKASEKIQAIIAEA 222 (465)
Q Consensus 153 k~~~sI~VP~~~~r~IIGkgG~tiK~IEeETgtkI~IPr~~~-sg~I~ItG~ske~V~~A~~rI~~Iv~e~ 222 (465)
..+.++.||+++|+.|||+||++||+|+++|||+|+||..++ ++.|+|+|+ .+++++|+++|+.++.+.
T Consensus 16 p~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g~~~~~V~I~G~-~e~v~~A~~~I~~i~~e~ 85 (104)
T 2ctk_A 16 PVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPELQSDIIAITGL-AANLDRAKAGLLERVKEL 85 (104)
T ss_dssp CEEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTTTTCCEEEEEEC-HHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCCCCCcceEEEEcC-HHHHHHHHHHHHHHHhhH
Confidence 488999999999999999999999999999999999998764 458999998 599999999999999875
No 7
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.44 E-value=1.9e-13 Score=115.11 Aligned_cols=74 Identities=23% Similarity=0.294 Sum_probs=66.5
Q ss_pred CCCCeEEEEEeCcceeccccCCCChhHHHHHHHhCcEEEcCCCCC--CCcEEEEecCHHHHHHHHHHHHHHHHHHhh
Q 012372 150 SAERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK--EDSIIIEGNSTDSVAKASEKIQAIIAEAVE 224 (465)
Q Consensus 150 ~~~k~~~sI~VP~~~~r~IIGkgG~tiK~IEeETgtkI~IPr~~~--sg~I~ItG~ske~V~~A~~rI~~Iv~e~~k 224 (465)
...+++.++.||+++|+.|||+||++||+|+++|||+|+||..++ .+.|+|+|. .+++++|+++|+.|+.++.+
T Consensus 13 l~~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~~~~~~V~I~G~-~e~v~~A~~~I~~i~~e~~~ 88 (95)
T 2ctm_A 13 LEQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSGAPDPNCVTVTGL-PENVEEAIDHILNLEEEYLA 88 (95)
T ss_dssp TTTCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTTCSCTTEEEEESC-HHHHHHHHHHHHHHHHHHHT
T ss_pred hcccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCCCCCCcEEEEEcC-HHHHHHHHHHHHHHHHHHHH
Confidence 355788999999999999999999999999999999999998764 347999998 69999999999999998654
No 8
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.34 E-value=3.9e-12 Score=108.51 Aligned_cols=70 Identities=30% Similarity=0.441 Sum_probs=64.0
Q ss_pred CCeEEEEEeCcceeccccCCCChhHHHHHHH-hCcEEEcCCCCCCCcEEEEecCHHHHHHHHHHHHHHHHHHhh
Q 012372 152 ERHSLSVEVGASVIRFIKGKEGSTQKKFEKE-MGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAIIAEAVE 224 (465)
Q Consensus 152 ~k~~~sI~VP~~~~r~IIGkgG~tiK~IEeE-TgtkI~IPr~~~sg~I~ItG~ske~V~~A~~rI~~Iv~e~~k 224 (465)
...+.++.||+.+|++|||+||+++|+|+++ ++++|+||+ +++.|+|+|+ ++.|++|+.+|+.++++...
T Consensus 25 ~~~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~--~~~~ItI~G~-~~~V~~a~~~I~~~v~el~~ 95 (102)
T 2ctf_A 25 SFTVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTE--GEDKITLEGP-TEDVSVAQEQIEGMVKDLIN 95 (102)
T ss_dssp CCEEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECS--SSCEEEEEEC-HHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCC--CCCEEEEECC-HHHHHHHHHHHHHHHHHHHh
Confidence 3478999999999999999999999999997 599999998 4578999998 89999999999999998765
No 9
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.33 E-value=3e-12 Score=104.30 Aligned_cols=72 Identities=21% Similarity=0.273 Sum_probs=64.4
Q ss_pred CCCCeEEEEEeCcceeccccCCCChhHHHHHHHhCcEEEcCCCCC---CCcEEEEecCHHHHHHHHHHHHHHHHHH
Q 012372 150 SAERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK---EDSIIIEGNSTDSVAKASEKIQAIIAEA 222 (465)
Q Consensus 150 ~~~k~~~sI~VP~~~~r~IIGkgG~tiK~IEeETgtkI~IPr~~~---sg~I~ItG~ske~V~~A~~rI~~Iv~e~ 222 (465)
...+++..+.||+++++.||||||++||+|+++|||+|+|+.... ++.|+|+|. .+++++|+.+|+.++.+.
T Consensus 3 ~g~~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~-~~~v~~A~~~I~~~i~~~ 77 (82)
T 1zzk_A 3 MGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGT-QDQIQNAQYLLQNSVKQY 77 (82)
T ss_dssp CCCCEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCTTSCSSEEEEEEEEC-HHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCCCCCCCceEEEEEeC-HHHHHHHHHHHHHHHHhc
Confidence 356789999999999999999999999999999999999987521 368999995 899999999999999874
No 10
>2vfk_A AKAP18 delta; APO, hydrolase; HET: AMP; 1.50A {Homo sapiens} PDB: 2vfl_A* 2vfy_A
Probab=99.32 E-value=7.2e-12 Score=115.25 Aligned_cols=105 Identities=17% Similarity=0.295 Sum_probs=85.8
Q ss_pred ccCCCeeeEEEeeeEeCChhHHHHHHHHHHHhHHHHHhhhCCCCcEEEEeecccCCCCCCcceEEEEeceecCCcchHHH
Q 012372 336 FIKPKTFHLTVLMLKLWNKDRVNAATNVLKSISSKVMDALDNRPLFIRLKGLDLMRGSKDKARILYAPVEEIGDGDRLLH 415 (465)
Q Consensus 336 F~~p~tLHLTLgVL~L~~~eev~kA~~~L~slk~~I~~iL~~~pL~I~LkGL~~MnddPs~a~VLYAk~~~~d~~~rL~~ 415 (465)
++++..+||||.+|...++++++++.++|+++...+.+++.+.|+.|+|+|+++|++ +|||+++...++.+.|+.
T Consensus 38 ~v~~~~~HiTL~flg~~~~~~~~~l~~~l~~~~~~~~~~~~~~pf~l~l~g~~~F~~-----~vl~~~v~~~~~~~~L~~ 112 (205)
T 2vfk_A 38 MVGDGSFHITLLVMQLLNEDEVNIGTDALLELKPFVEEILEGKHLTLPFHGIGTFQG-----QVGFVKLADGDHVSALLE 112 (205)
T ss_dssp BCCTTCCEEEEEEECCCSHHHHHHHHHHHHHHHHHHHHHTTTSCCEEEEEEEEEETT-----TEEEEEECCSHHHHHHHH
T ss_pred hCCcCccEEEEEEEEcCCHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEechhhCCC-----cEEEEeecccccHHHHHH
Confidence 677899999999999999999999999999998777788888999999999999985 699999973223478999
Q ss_pred HHHHHHHHHHHh-cc-CCCcceEEeeeehhHH
Q 012372 416 ACRILIAFVSSI-FA-PLCTSLIIKMKQYYII 445 (465)
Q Consensus 416 ~cq~I~d~F~e~-F~-p~~~~~i~~~~~~~~~ 445 (465)
+++.|.+.|.+. |. +......-|+|+-+..
T Consensus 113 L~~~l~~~~~~~g~~~~~~~~f~PHiTlar~~ 144 (205)
T 2vfk_A 113 IAETAKRTFQEKGILAGESRTFKPHLTFMKLS 144 (205)
T ss_dssp HHHHHHHHHHTTTCCBCCSSCCCCCEEEEEGG
T ss_pred HHHHHHHHHHHcCCCcCCCCCcceEEEEEecc
Confidence 999999998863 42 2344556677766543
No 11
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.28 E-value=4.9e-12 Score=103.72 Aligned_cols=67 Identities=25% Similarity=0.374 Sum_probs=59.5
Q ss_pred CeEEEEEeCcceeccccCCCChhHHHHHHHhCcEEEcCCCCC-----CCcEEEEecCHHHHHHHHHHHHHHHH
Q 012372 153 RHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK-----EDSIIIEGNSTDSVAKASEKIQAIIA 220 (465)
Q Consensus 153 k~~~sI~VP~~~~r~IIGkgG~tiK~IEeETgtkI~IPr~~~-----sg~I~ItG~ske~V~~A~~rI~~Iv~ 220 (465)
.....+.||+++++.||||||+|||+|+++|||+|+|+..+. +..|+|+| +.+++++|+++|+.++.
T Consensus 13 ~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~er~v~I~G-~~~~v~~A~~~I~~i~~ 84 (85)
T 2opv_A 13 GTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIG-DPYKVQQACEMVMDILR 84 (85)
T ss_dssp SEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCSSTTSCEEEEEEE-CHHHHHHHHHHHHHHHT
T ss_pred CEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCCCCCCCceEEEEEe-CHHHHHHHHHHHHHHhc
Confidence 457899999999999999999999999999999999987543 12399999 79999999999999875
No 12
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.27 E-value=3.9e-12 Score=101.60 Aligned_cols=68 Identities=18% Similarity=0.303 Sum_probs=59.9
Q ss_pred CeEEEEEeCcceeccccCCCChhHHHHHHHhCcEEEcCCCCC------CCcEEEEecCHHHHHHHHHHHHHHHHH
Q 012372 153 RHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK------EDSIIIEGNSTDSVAKASEKIQAIIAE 221 (465)
Q Consensus 153 k~~~sI~VP~~~~r~IIGkgG~tiK~IEeETgtkI~IPr~~~------sg~I~ItG~ske~V~~A~~rI~~Iv~e 221 (465)
+.+..+.||+++++.|||+||+++|+|+++|||+|+|++.++ ++.|+|+|. .+++.+|+..|+.++.+
T Consensus 2 ~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~-~~~v~~A~~~I~~~i~e 75 (76)
T 1dtj_A 2 KELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGS-PAATQAAQYLISQRVTY 75 (76)
T ss_dssp CEEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCSTTCCEEEEEEEES-HHHHHHHHHHHHHHCC-
T ss_pred ceEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCCCCCceeEEEEEeC-HHHHHHHHHHHHHHHhc
Confidence 456789999999999999999999999999999999997532 368999997 89999999999988643
No 13
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.27 E-value=4.2e-12 Score=101.60 Aligned_cols=70 Identities=24% Similarity=0.327 Sum_probs=62.3
Q ss_pred CCCeEEEEEeCcceeccccCCCChhHHHHHHHhCcEEEcCCCCC-CCcEEEEecCHHHHHHHHHHHHHHHHH
Q 012372 151 AERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK-EDSIIIEGNSTDSVAKASEKIQAIIAE 221 (465)
Q Consensus 151 ~~k~~~sI~VP~~~~r~IIGkgG~tiK~IEeETgtkI~IPr~~~-sg~I~ItG~ske~V~~A~~rI~~Iv~e 221 (465)
+.+....+.||+++++.|||+||++||+|+++|||+|+|+..+. +..|+|+|. .+++.+|+.+|..++.+
T Consensus 2 ~~~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~~~~er~v~I~G~-~~~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 2 NVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGP-TNAIFKAFAMIIDKLEE 72 (73)
T ss_dssp CCCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSSCCSEEEEEEEEC-HHHHHHHHHHHHHHHHC
T ss_pred CceEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecCCCCcEEEEEEeC-HHHHHHHHHHHHHHHhc
Confidence 34678899999999999999999999999999999999987643 346899997 89999999999988764
No 14
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.26 E-value=3.6e-12 Score=103.71 Aligned_cols=72 Identities=17% Similarity=0.308 Sum_probs=63.1
Q ss_pred CCCCeEEEEEeCcceeccccCCCChhHHHHHHHhCcEEEcCCCCC---CCcEEEEecCHHHHHHHHHHHHHHHHHH
Q 012372 150 SAERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK---EDSIIIEGNSTDSVAKASEKIQAIIAEA 222 (465)
Q Consensus 150 ~~~k~~~sI~VP~~~~r~IIGkgG~tiK~IEeETgtkI~IPr~~~---sg~I~ItG~ske~V~~A~~rI~~Iv~e~ 222 (465)
.+.+.+..+.||.++++.||||||++||+|+++|||+|+|+...+ ++.|+|+|. .+++.+|+.+|+.++.+.
T Consensus 2 ~g~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~~~~~~r~v~I~G~-~~~v~~A~~~I~~~i~~~ 76 (82)
T 1wvn_A 2 LGSQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGS-AASISLAQYLINARLSSE 76 (82)
T ss_dssp CTTCEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEEC-HHHHHHHHHHHHHHTC--
T ss_pred CCCcEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecCCCCCCceEEEEEcC-HHHHHHHHHHHHHHHHhh
Confidence 467889999999999999999999999999999999999987422 468999996 599999999999998763
No 15
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.24 E-value=5.6e-12 Score=105.41 Aligned_cols=70 Identities=23% Similarity=0.378 Sum_probs=63.1
Q ss_pred CCCeEEEEEeCcceeccccCCCChhHHHHHHHhCcEEEcCCCCC-----CCcEEEEecCHHHHHHHHHHHHHHHHH
Q 012372 151 AERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK-----EDSIIIEGNSTDSVAKASEKIQAIIAE 221 (465)
Q Consensus 151 ~~k~~~sI~VP~~~~r~IIGkgG~tiK~IEeETgtkI~IPr~~~-----sg~I~ItG~ske~V~~A~~rI~~Iv~e 221 (465)
..+++..+.||+++++.||||+|+|||+|+++|||+|+|+..+. +..|+|+| +.+.+++|+++|+.++.+
T Consensus 12 p~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~r~v~I~G-~~~~v~~A~~~I~~~i~~ 86 (94)
T 1x4m_A 12 PGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITG-DPYKVQQAKEMVLELIRD 86 (94)
T ss_dssp CCCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCSSCSCEEEEEEE-CTTTHHHHHHHHHHHHCC
T ss_pred CCcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCCCCCCceEEEEEe-CHHHHHHHHHHHHHHHhc
Confidence 46789999999999999999999999999999999999987643 45699999 689999999999999865
No 16
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.24 E-value=7.2e-12 Score=103.66 Aligned_cols=72 Identities=21% Similarity=0.281 Sum_probs=64.5
Q ss_pred CCCCeEEEEEeCcceeccccCCCChhHHHHHHHhCcEEEcCCCC---CCCcEEEEecCHHHHHHHHHHHHHHHHHH
Q 012372 150 SAERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSK---KEDSIIIEGNSTDSVAKASEKIQAIIAEA 222 (465)
Q Consensus 150 ~~~k~~~sI~VP~~~~r~IIGkgG~tiK~IEeETgtkI~IPr~~---~sg~I~ItG~ske~V~~A~~rI~~Iv~e~ 222 (465)
...+++..+.||+++++.||||+|++||+|+++|||+|+|+... +++.|+|+|. .+++++|+.+|+.++.+.
T Consensus 10 ~~~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~v~I~G~-~e~v~~A~~~I~~~i~e~ 84 (89)
T 1j5k_A 10 GGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGT-QDQIQNAQYLLQNSVKQY 84 (89)
T ss_dssp CCCEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSCCSSSSEEEEEEEEE-HHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCCCCCCCccEEEEEcC-HHHHHHHHHHHHHHHHhh
Confidence 35678899999999999999999999999999999999998742 2478999997 899999999999999874
No 17
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.24 E-value=6.2e-12 Score=100.81 Aligned_cols=69 Identities=17% Similarity=0.334 Sum_probs=61.8
Q ss_pred CCeEEEEEeCcceeccccCCCChhHHHHHHHhCcEEEcCCCCC---CCcEEEEecCHHHHHHHHHHHHHHHHH
Q 012372 152 ERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK---EDSIIIEGNSTDSVAKASEKIQAIIAE 221 (465)
Q Consensus 152 ~k~~~sI~VP~~~~r~IIGkgG~tiK~IEeETgtkI~IPr~~~---sg~I~ItG~ske~V~~A~~rI~~Iv~e 221 (465)
..++..+.||.++++.|||+||++||+|+++|||+|+|+.... ++.|+|+|. .+++.+|+.+|+.++.+
T Consensus 3 ~~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~-~~~v~~A~~~I~~~i~~ 74 (76)
T 2p2r_A 3 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGS-AASISLAQYLINVRLSS 74 (76)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEEC-HHHHHHHHHHHHHHHTT
T ss_pred CceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCCCCCCCeEEEEEEeC-HHHHHHHHHHHHHHHHc
Confidence 4678899999999999999999999999999999999987422 578999997 89999999999998754
No 18
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.24 E-value=1.3e-11 Score=102.78 Aligned_cols=73 Identities=22% Similarity=0.383 Sum_probs=64.9
Q ss_pred CCCeEEEEEeCcceeccccCCCChhHHHHHHHhCcEEEcCCCCC---CCcEEEEecCHHHHHHHHHHHHHHHHHHhh
Q 012372 151 AERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK---EDSIIIEGNSTDSVAKASEKIQAIIAEAVE 224 (465)
Q Consensus 151 ~~k~~~sI~VP~~~~r~IIGkgG~tiK~IEeETgtkI~IPr~~~---sg~I~ItG~ske~V~~A~~rI~~Iv~e~~k 224 (465)
....+..+.||.++++.|||++|++||+|+++|||+|+|+...+ ++.|+|+|. .++|++|+.+|+.++.+.+.
T Consensus 12 ~~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~g~~~r~v~I~G~-~e~v~~A~~~I~~~i~~~~~ 87 (92)
T 1x4n_A 12 RSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGT-PESVQSAKRLLDQIVEKGRS 87 (92)
T ss_dssp CCCEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCCTTCSEEEEEEEEC-HHHHHHHHHHHHHHHHHTTC
T ss_pred CCCEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCCCCCCccEEEEEeC-HHHHHHHHHHHHHHHHhccc
Confidence 34678899999999999999999999999999999999987532 368999997 89999999999999988543
No 19
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.23 E-value=8e-12 Score=102.72 Aligned_cols=70 Identities=17% Similarity=0.294 Sum_probs=62.4
Q ss_pred CeEEEEEeCcceeccccCCCChhHHHHHHHhCcEEEcCCCCC------CCcEEEEecCHHHHHHHHHHHHHHHHHHh
Q 012372 153 RHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK------EDSIIIEGNSTDSVAKASEKIQAIIAEAV 223 (465)
Q Consensus 153 k~~~sI~VP~~~~r~IIGkgG~tiK~IEeETgtkI~IPr~~~------sg~I~ItG~ske~V~~A~~rI~~Iv~e~~ 223 (465)
+.+..+.||.++++.|||+||++||+|+++|||+|+|++.++ ++.|+|+|. .+++..|+..|+.++.+..
T Consensus 2 k~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~g~~~r~v~I~G~-~~~v~~A~~~I~~~i~~~~ 77 (87)
T 1ec6_A 2 KELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGS-PAATQAAQYLISQRVTYEQ 77 (87)
T ss_dssp CSEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBSTTSCEEEEEEESS-HHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCCCCCceEEEEEcC-HHHHHHHHHHHHHHHhccc
Confidence 456789999999999999999999999999999999997532 368999996 8999999999999998753
No 20
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.21 E-value=1.5e-11 Score=104.55 Aligned_cols=70 Identities=24% Similarity=0.248 Sum_probs=62.1
Q ss_pred CCeEEEEEeCcceeccccCCCChhHHHHHHHhCcEEEcCCCCC-----CCcEEEEecCHHHHHHHHHHHHHHHHHH
Q 012372 152 ERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK-----EDSIIIEGNSTDSVAKASEKIQAIIAEA 222 (465)
Q Consensus 152 ~k~~~sI~VP~~~~r~IIGkgG~tiK~IEeETgtkI~IPr~~~-----sg~I~ItG~ske~V~~A~~rI~~Iv~e~ 222 (465)
...+..+.||+++++.||||||+|||+|+++|||+|+|++..+ ++.|+|+|. .+.+++|+.+|+.++.+.
T Consensus 13 ap~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~~~V~I~G~-~~~v~~A~~~I~~~i~e~ 87 (104)
T 1we8_A 13 TPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGT-QKEVAAAKHLILEKVSED 87 (104)
T ss_dssp CEEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCCSSSSEEEEEEEEE-HHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCCCCCCCcceEEEEcC-HHHHHHHHHHHHHHHhhC
Confidence 4567899999999999999999999999999999999997542 578999997 458999999999999763
No 21
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.18 E-value=3e-11 Score=103.67 Aligned_cols=71 Identities=21% Similarity=0.332 Sum_probs=61.0
Q ss_pred CeEEEEEeCcceeccccCCCChhHHHHHHHhCcEEEcCCCCC---CCcEEEEecCHHHHHHHHHHHHHHHHHHhh
Q 012372 153 RHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK---EDSIIIEGNSTDSVAKASEKIQAIIAEAVE 224 (465)
Q Consensus 153 k~~~sI~VP~~~~r~IIGkgG~tiK~IEeETgtkI~IPr~~~---sg~I~ItG~ske~V~~A~~rI~~Iv~e~~k 224 (465)
..+.++.||+++++.||||+|+|||+|+++|+|+|+|++... +..|+|+|. .+++++|+++|+.++.+...
T Consensus 10 ~~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~~~~~er~V~I~G~-~e~v~~A~~~I~~ii~~~~~ 83 (106)
T 2hh3_A 10 GGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGP-PDRCEHAARIINDLLQSLRS 83 (106)
T ss_dssp --CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSCSSSSEEEEEEESS-HHHHHHHHHHHHHHHHHHC-
T ss_pred CeEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCCCCCceeEEEEEeC-HHHHHHHHHHHHHHHhcccc
Confidence 446799999999999999999999999999999999986443 236999997 89999999999999988533
No 22
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.17 E-value=1.2e-11 Score=104.27 Aligned_cols=68 Identities=25% Similarity=0.274 Sum_probs=60.7
Q ss_pred CCCCeEEEEEeCcceeccccCCCChhHHHHHHHhCcE-EEcCCCCCCCcEEEEecCHHHHHHHHHHHHHHH
Q 012372 150 SAERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVK-IILPSSKKEDSIIIEGNSTDSVAKASEKIQAII 219 (465)
Q Consensus 150 ~~~k~~~sI~VP~~~~r~IIGkgG~tiK~IEeETgtk-I~IPr~~~sg~I~ItG~ske~V~~A~~rI~~Iv 219 (465)
....+..++.||+++++.+||+||++||+|+++||++ |+|- +++|.|+|.|++.+++++|+.+|+.+.
T Consensus 11 ~~~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~--eddG~V~I~g~~~ea~~~A~~~I~~ie 79 (91)
T 2cpq_A 11 LAAAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELD--EDTGTFRIYGESADAVKKARGFLEFVE 79 (91)
T ss_dssp SSCSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEE--TTTTEEEEEESSHHHHHHHHHHHSCCC
T ss_pred ccCceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEE--cCCCEEEEEECCHHHHHHHHHHHHhhh
Confidence 4567999999999999999999999999999999998 9993 235999999999999999999995443
No 23
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.15 E-value=4.3e-11 Score=107.09 Aligned_cols=106 Identities=21% Similarity=0.215 Sum_probs=89.0
Q ss_pred CCeEEEEEeCcceeccccCCCChhHHHHHHHhCcEEEcCCCCC-CCcEEEEecCHHHHHHHHHHHHHHHHHHhhC-----
Q 012372 152 ERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK-EDSIIIEGNSTDSVAKASEKIQAIIAEAVES----- 225 (465)
Q Consensus 152 ~k~~~sI~VP~~~~r~IIGkgG~tiK~IEeETgtkI~IPr~~~-sg~I~ItG~ske~V~~A~~rI~~Iv~e~~kk----- 225 (465)
..+...+.||+.+++.||||||+++|+|+++||++|+||..+. +..|+|+|+ .+++.+|+.+|..++.+....
T Consensus 3 ~~~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~r~v~I~G~-~~~v~~A~~~I~~~i~e~~~~~~~~~ 81 (160)
T 2jzx_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGP-TNAIFKAFAMIIDKLEEDISSSMTNS 81 (160)
T ss_dssp CEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECCTTTEEEEEEEEE-HHHHHHHHHHHHHHHHHHHTSCCCSS
T ss_pred ccEEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCCCCCceEEEEEeC-HHHHHHHHHHHHHHHHhhccccCCCC
Confidence 4578899999999999999999999999999999999997643 457899997 899999999999888774321
Q ss_pred ---CCCcccceEeeccccchhhhhhHHHHHHHHhcC
Q 012372 226 ---PSLDYSHFVSLPLAVHPELVDKLVNFQNTILGI 258 (465)
Q Consensus 226 ---~k~~~thFVsIPl~~hP~I~~~~~~Fq~sIL~~ 258 (465)
+....+..+.||...+..|+|+-+..++.|.+.
T Consensus 82 ~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~ 117 (160)
T 2jzx_A 82 TAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRES 117 (160)
T ss_dssp SCCCCCSEEEEEEEEHHHHHHHHCGGGHHHHHHHHH
T ss_pred ccCCCCCEEEEEEEChhheeeEECCCCHHHHHHHHH
Confidence 012356777889888899999999999988765
No 24
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.13 E-value=2.7e-11 Score=103.66 Aligned_cols=66 Identities=17% Similarity=0.294 Sum_probs=60.0
Q ss_pred EEEEEeCcceeccccCCCChhHHHHHHHhCcEEEcCCCCC------CCcEEEEecCHHHHHHHHHHHHHHHHH
Q 012372 155 SLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK------EDSIIIEGNSTDSVAKASEKIQAIIAE 221 (465)
Q Consensus 155 ~~sI~VP~~~~r~IIGkgG~tiK~IEeETgtkI~IPr~~~------sg~I~ItG~ske~V~~A~~rI~~Iv~e 221 (465)
+..+.||.++++.||||+|+|||+|+++|||+|+|++..+ ++.|+|+| +.++|++|+..|+.++.+
T Consensus 8 ~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~~~~~~~r~V~I~G-~~e~v~~A~~~I~~~i~e 79 (107)
T 2hh2_A 8 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRG-SPQQIDHAKQLIEEKIEG 79 (107)
T ss_dssp CEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCCCTTCCTTEEEEEEES-CHHHHHHHHHHHHHHSCS
T ss_pred eEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCccCCCCCCCceEEEEEC-CHHHHHHHHHHHHHHHhc
Confidence 6789999999999999999999999999999999987642 36899999 789999999999988865
No 25
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.12 E-value=1.3e-10 Score=104.31 Aligned_cols=105 Identities=18% Similarity=0.272 Sum_probs=86.7
Q ss_pred CeEEEEEeCcceeccccCCCChhHHHHHHHhCcEEEcCCCCC----CCcEEEEecCHHHHHHHHHHHHHHHHHHhh-CC-
Q 012372 153 RHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK----EDSIIIEGNSTDSVAKASEKIQAIIAEAVE-SP- 226 (465)
Q Consensus 153 k~~~sI~VP~~~~r~IIGkgG~tiK~IEeETgtkI~IPr~~~----sg~I~ItG~ske~V~~A~~rI~~Iv~e~~k-k~- 226 (465)
+-+..+.||.++++.||||||+++|+|+++|||+|+|+..+. +..|+|+| +.+++..|+.+|..++.+... .|
T Consensus 2 ~~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~G-~~e~v~~A~~~I~~~~~e~~~~~~~ 80 (163)
T 3krm_A 2 QEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITG-PPEAQFKAQGRIYGKLKEENFFGPK 80 (163)
T ss_dssp CEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTTCSEEEEEEEE-CHHHHHHHHHHHHHHHHHTTSSCSS
T ss_pred ceEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCCCCCCCCceEEEEEc-CHHHHHHHHHHHHHHHhcccccccc
Confidence 346789999999999999999999999999999999997542 34599999 589999999999999987421 00
Q ss_pred -CCcccceEeeccccchhhhhhHHHHHHHHhcC
Q 012372 227 -SLDYSHFVSLPLAVHPELVDKLVNFQNTILGI 258 (465)
Q Consensus 227 -k~~~thFVsIPl~~hP~I~~~~~~Fq~sIL~~ 258 (465)
....+..+.||...+..|+|+-+..++.|.+.
T Consensus 81 ~~~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~ 113 (163)
T 3krm_A 81 EEVKLETHIRVPASAAGRVIGKGGKTVNELQNL 113 (163)
T ss_dssp CCCCEEEEEEEETTTHHHHHCGGGHHHHHHHHH
T ss_pred cCCceEEEEEcChhheeeEEcCCChHHHHHHHH
Confidence 12234567799988999999999999999765
No 26
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.07 E-value=1.2e-10 Score=106.18 Aligned_cols=108 Identities=22% Similarity=0.232 Sum_probs=88.1
Q ss_pred CCCCeEEEEEeCcceeccccCCCChhHHHHHHHhCcEEEcCCCCC------CCcEEEEecCHHHHHHHHHHHHHHHHHHh
Q 012372 150 SAERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK------EDSIIIEGNSTDSVAKASEKIQAIIAEAV 223 (465)
Q Consensus 150 ~~~k~~~sI~VP~~~~r~IIGkgG~tiK~IEeETgtkI~IPr~~~------sg~I~ItG~ske~V~~A~~rI~~Iv~e~~ 223 (465)
+.++++..+.||.++++.||||||++||+|+++|||+|+|++.++ +..|+|+|. .+++.+|+.+|..++.+..
T Consensus 2 l~~~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~-~~~v~~A~~~I~~~~~~~~ 80 (178)
T 2anr_A 2 LGSQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGT-IEALNAVHGFIAEKIREMP 80 (178)
T ss_dssp -CCCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEEC-HHHHHHHHHHHHHHHTCCC
T ss_pred CCCCEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeC-HHHHHHHHHHHHHHHhccC
Confidence 467899999999999999999999999999999999999987542 246899996 8899999999998886521
Q ss_pred hC-----------------CCCcccceEeeccccchhhhhhHHHHHHHHhcC
Q 012372 224 ES-----------------PSLDYSHFVSLPLAVHPELVDKLVNFQNTILGI 258 (465)
Q Consensus 224 kk-----------------~k~~~thFVsIPl~~hP~I~~~~~~Fq~sIL~~ 258 (465)
.. +....+..+.||...+..|+|+-+..++.|.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~ 132 (178)
T 2anr_A 81 QNVAKTEPVSILQPQTTVNPDRANQVKIIVPNSTAGLIIGKGGATVKAIMEQ 132 (178)
T ss_dssp CC-----------------CGGGGEEEEEEEHHHHHHHHCGGGHHHHHHHHH
T ss_pred CccccCCcccccCCccCCCCCCceEEEEEEchhheeeeECCCcHHHHHHHHH
Confidence 10 001245677789888899999999999998765
No 27
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.06 E-value=1.8e-10 Score=102.55 Aligned_cols=71 Identities=28% Similarity=0.417 Sum_probs=62.3
Q ss_pred CCCeEEEEEeCcc------eeccccCCCChhHHHHHHHhCcEEEcCCCC-------------------CCCcEEEEecCH
Q 012372 151 AERHSLSVEVGAS------VIRFIKGKEGSTQKKFEKEMGVKIILPSSK-------------------KEDSIIIEGNST 205 (465)
Q Consensus 151 ~~k~~~sI~VP~~------~~r~IIGkgG~tiK~IEeETgtkI~IPr~~-------------------~sg~I~ItG~sk 205 (465)
..+++..|.||.+ |++.|||++|.|+|+|++||||+|+|-..+ +.+.|.|+|.+.
T Consensus 4 ~~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~ 83 (131)
T 1k1g_A 4 ATRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTM 83 (131)
T ss_dssp -CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSH
T ss_pred CceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCH
Confidence 4588999999999 778999999999999999999999995432 256889999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 012372 206 DSVAKASEKIQAIIAE 221 (465)
Q Consensus 206 e~V~~A~~rI~~Iv~e 221 (465)
+.+++|+++|+.|+..
T Consensus 84 e~~~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 84 ENVKKAVEQIRNILKQ 99 (131)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999999854
No 28
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.05 E-value=2.2e-10 Score=102.42 Aligned_cols=104 Identities=20% Similarity=0.243 Sum_probs=84.5
Q ss_pred eEEEEEeCcceeccccCCCChhHHHHHHHhCcEEEcCCCCC-----CCcEEEEecCHHHHHHHHHHHHHHHHHHhhCC--
Q 012372 154 HSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK-----EDSIIIEGNSTDSVAKASEKIQAIIAEAVESP-- 226 (465)
Q Consensus 154 ~~~sI~VP~~~~r~IIGkgG~tiK~IEeETgtkI~IPr~~~-----sg~I~ItG~ske~V~~A~~rI~~Iv~e~~kk~-- 226 (465)
.+..+.||+++++.||||||++||+|+++|||+|+|++.+. +..|+|+| +.++|.+|+..|..++.+.....
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~~r~v~I~G-~~~~v~~A~~~I~~ii~e~~~~~~~ 80 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIG-DPYKVQQACEMVMDILRERDQGGFG 80 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSSSSSCEEEEEEE-CHHHHHHHHHHHHHHTTCSSSCCCS
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCCCCCCCceEEEEEc-CHHHHHHHHHHHHHHHHhccCCCCC
Confidence 46789999999999999999999999999999999976432 34789999 58999999999999987632100
Q ss_pred -------CCcccceEeeccccchhhhhhHHHHHHHHhcC
Q 012372 227 -------SLDYSHFVSLPLAVHPELVDKLVNFQNTILGI 258 (465)
Q Consensus 227 -------k~~~thFVsIPl~~hP~I~~~~~~Fq~sIL~~ 258 (465)
....+..+.||...+..|+|+-+..++.|.+.
T Consensus 81 ~~~~~~~~~~~~~~i~vp~~~~g~iIGk~G~~I~~i~~~ 119 (164)
T 2jvz_A 81 DRNEYGSRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQND 119 (164)
T ss_dssp SCSSCTTSCSSSBCCEEETTTHHHHHCSSSHHHHHHHHH
T ss_pred CccccCCCCCceEEEEEChhhccccCCCCcHhHHHHHHH
Confidence 00123567789888899999999999998775
No 29
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.05 E-value=2.4e-10 Score=103.89 Aligned_cols=105 Identities=18% Similarity=0.220 Sum_probs=85.6
Q ss_pred CeEEEEEeCcceeccccCCCChhHHHHHHHhCcEEEcCCCCC---CCcEEEEecCHHHHHHHHHHHHHHHHHHhhCC---
Q 012372 153 RHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK---EDSIIIEGNSTDSVAKASEKIQAIIAEAVESP--- 226 (465)
Q Consensus 153 k~~~sI~VP~~~~r~IIGkgG~tiK~IEeETgtkI~IPr~~~---sg~I~ItG~ske~V~~A~~rI~~Iv~e~~kk~--- 226 (465)
..+..+.||+++++.||||||++||+|+++|||+|+|++... +..|+|+|. .++|.+|+.+|..++.+.....
T Consensus 2 ~~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~r~v~I~G~-~~~v~~A~~~I~~~~~~~~~~~~~~ 80 (174)
T 1j4w_A 2 SHMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGP-PDRAQHAAEIITDLLRSVQAGNPGG 80 (174)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCTTSCSEEEEEEEEC-HHHHHHHHHHHHHHHHHHC------
T ss_pred CeEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCCCCCCccEEEEEeC-HHHHHHHHHHHHHHHHhcccCCCCC
Confidence 467889999999999999999999999999999999975321 357899997 8999999999999998752100
Q ss_pred --------------------CCcccceEeeccccchhhhhhHHHHHHHHhcC
Q 012372 227 --------------------SLDYSHFVSLPLAVHPELVDKLVNFQNTILGI 258 (465)
Q Consensus 227 --------------------k~~~thFVsIPl~~hP~I~~~~~~Fq~sIL~~ 258 (465)
....+..+.||...+..|+|+-+..++.|.+.
T Consensus 81 ~~p~~~~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~ 132 (174)
T 1j4w_A 81 PGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQ 132 (174)
T ss_dssp -----------------------CEEEEEEETTTHHHHHCGGGHHHHHHHHH
T ss_pred CCCCCCCCCCCCCccccCCCCCcEEEEEEEChHHcCeeECCCchHHHHHHHH
Confidence 00135667789888899999999999998775
No 30
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=99.04 E-value=1.9e-10 Score=118.06 Aligned_cols=67 Identities=18% Similarity=0.257 Sum_probs=60.9
Q ss_pred CCCeEEEEEeCcceeccccCCCC--hhHHHHHHHhCcEEEcCCCC--------CCCcEEEEecCHHHHHHHHHHHHHH
Q 012372 151 AERHSLSVEVGASVIRFIKGKEG--STQKKFEKEMGVKIILPSSK--------KEDSIIIEGNSTDSVAKASEKIQAI 218 (465)
Q Consensus 151 ~~k~~~sI~VP~~~~r~IIGkgG--~tiK~IEeETgtkI~IPr~~--------~sg~I~ItG~ske~V~~A~~rI~~I 218 (465)
..+++.++.||+.+|++|||||| ++|++|.+||||+|+||..+ .++.|+|+|. .++|++|+.+|+.+
T Consensus 27 ~~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~-~enVE~AR~~I~~l 103 (376)
T 3n89_A 27 PTRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGY-FGDVDRARMLMRRN 103 (376)
T ss_dssp TTEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEE-HHHHHHHHHHHHHS
T ss_pred CCEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcC-HHHHHHHHHHHHhc
Confidence 56899999999999999999999 99999999999999999865 1467999997 89999999999763
No 31
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.02 E-value=5.6e-10 Score=100.13 Aligned_cols=72 Identities=22% Similarity=0.331 Sum_probs=63.7
Q ss_pred CCeEEEEEeCcceeccccCCCChhHHHHHHHhCcEEEcCCCCC---CC--cEEEEecCHHHHHHHHHHHHHHHHHHhh
Q 012372 152 ERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK---ED--SIIIEGNSTDSVAKASEKIQAIIAEAVE 224 (465)
Q Consensus 152 ~k~~~sI~VP~~~~r~IIGkgG~tiK~IEeETgtkI~IPr~~~---sg--~I~ItG~ske~V~~A~~rI~~Iv~e~~k 224 (465)
..+...+.||+.+++.|||+||+++++|+++|||+|+||+.+. .+ .|+|+| +.++|..|+.+|+.++.++.+
T Consensus 83 ~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I~i~~~~~~~~~~~~~v~I~G-~~~~v~~A~~~I~~~i~~~~~ 159 (163)
T 3krm_A 83 VKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTPDENDQVIVKIIG-HFYASQMAQRKIRDILAQVKQ 159 (163)
T ss_dssp CCEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEECCTTCCCCTTSEEEEEEEE-CHHHHHHHHHHHHHHHHHHTC
T ss_pred CceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeEEECCCCCCCCCCceEEEEEe-CHHHHHHHHHHHHHHHHHHHH
Confidence 4567799999999999999999999999999999999987642 12 689999 589999999999999999655
No 32
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=98.95 E-value=4.1e-10 Score=100.61 Aligned_cols=68 Identities=22% Similarity=0.360 Sum_probs=61.3
Q ss_pred eEEEEEeCcceeccccCCCChhHHHHHHHhCcEEEcCCCCC---CCcEEEEecCHHHHHHHHHHHHHHHHHH
Q 012372 154 HSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK---EDSIIIEGNSTDSVAKASEKIQAIIAEA 222 (465)
Q Consensus 154 ~~~sI~VP~~~~r~IIGkgG~tiK~IEeETgtkI~IPr~~~---sg~I~ItG~ske~V~~A~~rI~~Iv~e~ 222 (465)
....+.||+.+++.|||+||+++|+|+++|||+|+||+..+ ++.|+|+|. .+++..|+..|+.++.++
T Consensus 91 ~~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~~~~~~~~v~I~G~-~~~v~~A~~~I~~~i~~~ 161 (164)
T 2jvz_A 91 GGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGP-PDRCEHAARIINDLLQSL 161 (164)
T ss_dssp SSBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCCCTTSSEEEEEEESC-HHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEChhhccccCCCCcHhHHHHHHHHCCeEEEeCCCCCCCcEEEEEEcC-HHHHHHHHHHHHHHHhhh
Confidence 45678999999999999999999999999999999997644 468999997 899999999999999874
No 33
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=98.93 E-value=9.8e-10 Score=98.27 Aligned_cols=69 Identities=23% Similarity=0.336 Sum_probs=62.0
Q ss_pred CCeEEEEEeCcceeccccCCCChhHHHHHHHhCcEEEcCCCC----CCCcEEEEecCHHHHHHHHHHHHHHHHH
Q 012372 152 ERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSK----KEDSIIIEGNSTDSVAKASEKIQAIIAE 221 (465)
Q Consensus 152 ~k~~~sI~VP~~~~r~IIGkgG~tiK~IEeETgtkI~IPr~~----~sg~I~ItG~ske~V~~A~~rI~~Iv~e 221 (465)
......+.||+++++.|||+||+++|+|+++|||+|+|++.. +++.|+|+| +.++|.+|+.+|..++.|
T Consensus 87 ~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~~~~~v~I~G-~~~~v~~A~~~I~~~i~e 159 (160)
T 2jzx_A 87 PPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAG-IPQSIIECVKQICVVMLE 159 (160)
T ss_dssp CSEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCCCCCSTTCCEEEEEEEE-CHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEChhheeeEECCCCHHHHHHHHHhCCeEEECCCCCCCCCceEEEEEc-CHHHHHHHHHHHHHHHhc
Confidence 467899999999999999999999999999999999998632 257899999 589999999999998876
No 34
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.93 E-value=1.4e-09 Score=95.53 Aligned_cols=69 Identities=19% Similarity=0.212 Sum_probs=58.9
Q ss_pred eEEEEEeCcc-------eeccccCCCChhHHHHHHHhCcEEEcCCCC-------------CCCcEEEEecCHHHHHHHHH
Q 012372 154 HSLSVEVGAS-------VIRFIKGKEGSTQKKFEKEMGVKIILPSSK-------------KEDSIIIEGNSTDSVAKASE 213 (465)
Q Consensus 154 ~~~sI~VP~~-------~~r~IIGkgG~tiK~IEeETgtkI~IPr~~-------------~sg~I~ItG~ske~V~~A~~ 213 (465)
.+..|.||.+ +++.|||++|.|+|+|++||||+|+|-..+ +.+.|.|+|.+.+++++|++
T Consensus 12 ~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A~~ 91 (119)
T 2yqr_A 12 VQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAKK 91 (119)
T ss_dssp EEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHHHH
T ss_pred EEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHHHH
Confidence 4556777765 889999999999999999999999994221 24689999999999999999
Q ss_pred HHHHHHHHH
Q 012372 214 KIQAIIAEA 222 (465)
Q Consensus 214 rI~~Iv~e~ 222 (465)
+|+.|+.+.
T Consensus 92 ~Ie~Ll~~v 100 (119)
T 2yqr_A 92 LCENLLQTV 100 (119)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhhch
Confidence 999999875
No 35
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=98.84 E-value=1.7e-09 Score=98.47 Aligned_cols=68 Identities=25% Similarity=0.322 Sum_probs=60.7
Q ss_pred CeEEEEEeCcceeccccCCCChhHHHHHHHhCcEEEcCCCCC-----CCcEEEEecCHHHHHHHHHHHHHHHHH
Q 012372 153 RHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK-----EDSIIIEGNSTDSVAKASEKIQAIIAE 221 (465)
Q Consensus 153 k~~~sI~VP~~~~r~IIGkgG~tiK~IEeETgtkI~IPr~~~-----sg~I~ItG~ske~V~~A~~rI~~Iv~e 221 (465)
.....+.||.++++.|||+||++||+|+++|||+|+|++..+ ++.|+|+|. .++|.+|+.+|..++.+
T Consensus 103 ~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~~~~~~v~I~G~-~~~v~~A~~~I~~~i~e 175 (178)
T 2anr_A 103 ANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQNRVVTVSGE-PEQNRKAVELIIQKIQE 175 (178)
T ss_dssp GGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC----CCEEEEEEESS-HHHHHHHHHHHHHHHHS
T ss_pred ceEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeCCCCCCCCCceEEEEEcC-HHHHHHHHHHHHHHHHh
Confidence 467899999999999999999999999999999999987642 368999997 58999999999988864
No 36
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=98.83 E-value=2.1e-09 Score=97.70 Aligned_cols=66 Identities=23% Similarity=0.313 Sum_probs=58.1
Q ss_pred CeEEEEEeCcceeccccCCCChhHHHHHHHhCcEEEcCCCC------CCCcEEEEecCHHHHHHHHHHHHHHH
Q 012372 153 RHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSK------KEDSIIIEGNSTDSVAKASEKIQAII 219 (465)
Q Consensus 153 k~~~sI~VP~~~~r~IIGkgG~tiK~IEeETgtkI~IPr~~------~sg~I~ItG~ske~V~~A~~rI~~Iv 219 (465)
.....+.||.++++.||||+|++||+|+++|||+|+|++.. .++.|+|+| +.++|..|+..|+.++
T Consensus 103 ~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G-~~~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 103 LQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRG-TPQQIDYARQLIEEKI 174 (174)
T ss_dssp -CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEECCCTTTSCTTEEEEEEEC-CHHHHHHHHHHHHHHC
T ss_pred cEEEEEEEChHHcCeeECCCchHHHHHHHHHCCEEEECCCCCCCCCCCceEEEEEC-CHHHHHHHHHHHHHhC
Confidence 46788999999999999999999999999999999998753 136799999 6899999999998763
No 37
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=98.74 E-value=7.5e-09 Score=106.33 Aligned_cols=71 Identities=18% Similarity=0.238 Sum_probs=58.6
Q ss_pred ccCCCCeEEEEEeCcceeccccCCCC--hhHHHHHHHhCcEEEcCCCCC-------CCcEEEEecCHHHHHHHHHHHHHH
Q 012372 148 VPSAERHSLSVEVGASVIRFIKGKEG--STQKKFEKEMGVKIILPSSKK-------EDSIIIEGNSTDSVAKASEKIQAI 218 (465)
Q Consensus 148 ~~~~~k~~~sI~VP~~~~r~IIGkgG--~tiK~IEeETgtkI~IPr~~~-------sg~I~ItG~ske~V~~A~~rI~~I 218 (465)
..+...++.++.|++.+|++|||++| .+|++|+++|||+|++|+.++ ...|+|+| ++++|.+|+++|+.+
T Consensus 180 ~~~~~~~s~~v~V~~~~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~d~~d~~~~~~~ItItG-s~e~V~~Ark~I~~l 258 (376)
T 3n89_A 180 PAPENNFTLHFTLSTYYVDQVLGSSSTAQLMPVIERETTTIISYPCYNNRNETRGNIYEIKVVG-NIDNVLKARRYIMDL 258 (376)
T ss_dssp CCCSSCEEEEEEEEGGGHHHHTCCTTSCCHHHHHHHHHTCEEECC---------CCEEEEEEES-CHHHHHHHHHHHHHT
T ss_pred cccccceEEEEEeCHHHHHHhhcCCCcchHHHHHHHhhCCEEECCCCCCcccccCCceEEEEEe-CHHHHHHHHHHHHhh
Confidence 33456799999999999999999998 667999999999999998754 24699999 599999999999755
Q ss_pred H
Q 012372 219 I 219 (465)
Q Consensus 219 v 219 (465)
+
T Consensus 259 L 259 (376)
T 3n89_A 259 L 259 (376)
T ss_dssp S
T ss_pred C
Confidence 4
No 38
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=98.72 E-value=4.6e-09 Score=114.15 Aligned_cols=64 Identities=23% Similarity=0.234 Sum_probs=58.7
Q ss_pred CeEEEEEeCcceeccccCCCChhHHHHHHHhCcEEEcCCCCCCCcEEEEecCHHHHHHHHHHHHHHH
Q 012372 153 RHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAII 219 (465)
Q Consensus 153 k~~~sI~VP~~~~r~IIGkgG~tiK~IEeETgtkI~IPr~~~sg~I~ItG~ske~V~~A~~rI~~Iv 219 (465)
--..+++||+++++.|||+||++||+|+++|||+|+| +++|.|.|.|++++.+++|+++|+.|+
T Consensus 566 p~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I---~d~G~V~I~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 566 PVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQ---VDEETFSVFAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp CEEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEE---CSSSEEEEEESSHHHHHHHHHHTTC--
T ss_pred CeEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEE---cCCcEEEEEeCCHHHHHHHHHHHHHHh
Confidence 4578999999999999999999999999999999999 578999999999999999999998876
No 39
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=98.65 E-value=3.7e-09 Score=116.36 Aligned_cols=81 Identities=19% Similarity=0.312 Sum_probs=14.2
Q ss_pred eEEEEEeCcceeccccCCCChhHHHHHHHhCcEEEcCCCCCCCcEEEEecCHHHHHHHHHHHHHHHHHH---------hh
Q 012372 154 HSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAIIAEA---------VE 224 (465)
Q Consensus 154 ~~~sI~VP~~~~r~IIGkgG~tiK~IEeETgtkI~IPr~~~sg~I~ItG~ske~V~~A~~rI~~Iv~e~---------~k 224 (465)
-..++.||+++++.|||+||++||+|+++||++|+| +++|.|.|.+.+++.+++|+++|+.|+.+. +.
T Consensus 570 ~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi---~ddG~v~I~~~~~~~~~~A~~~i~~i~~~~~vG~v~~G~V~ 646 (726)
T 4aid_A 570 KIETINIPTDKIREVIGSGGKVIREIVATTGAKVDI---NDDGVVKVSASDGAKIKAAIDWIKSITDEAEVGKIYDGKVV 646 (726)
T ss_dssp C----------------------------------------------CCSCHHHHHHHHHC-------------------
T ss_pred eEEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeE---ECCceEEEEeCCHHHHHHHHHHHHHHhhhhcCCcEEEEEEE
Confidence 378899999999999999999999999999999999 678999999999999999999999998765 33
Q ss_pred CCCCcccceEeecc
Q 012372 225 SPSLDYSHFVSLPL 238 (465)
Q Consensus 225 k~k~~~thFVsIPl 238 (465)
+ ...|+.||.|..
T Consensus 647 ~-I~~fGaFVel~~ 659 (726)
T 4aid_A 647 K-VVDFGAFVNFFG 659 (726)
T ss_dssp --------------
T ss_pred E-EeccEEEEEECC
Confidence 3 678899998854
No 40
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=98.63 E-value=2.2e-08 Score=89.70 Aligned_cols=65 Identities=17% Similarity=0.325 Sum_probs=57.5
Q ss_pred EEEEeCcceeccccCCCChhHHHHHHHhCc-EEEcCCCCCC------C--cEEEEecCHHHHHHHHHHHHHHHHH
Q 012372 156 LSVEVGASVIRFIKGKEGSTQKKFEKEMGV-KIILPSSKKE------D--SIIIEGNSTDSVAKASEKIQAIIAE 221 (465)
Q Consensus 156 ~sI~VP~~~~r~IIGkgG~tiK~IEeETgt-kI~IPr~~~s------g--~I~ItG~ske~V~~A~~rI~~Iv~e 221 (465)
..+.||.+.++.+|||+|.|+|.|.+.||+ +|+|++.++. + .|+|+|+ .++|+.|+..|+..+++
T Consensus 69 ~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~~~~~~~~~vtI~G~-~~~v~~Ak~li~~~l~~ 142 (144)
T 2qnd_A 69 DVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNVPQEEGMVPFVFVGT-KDSIANATVLLDYHLNY 142 (144)
T ss_dssp EEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCCCCCTTEEEEEEEEE-HHHHHHHHHHHHHHHHT
T ss_pred EEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCccccCCeeEEEEEeC-HHHHHHHHHHHHHHHHh
Confidence 789999999999999999999999999996 9999975432 2 3889996 89999999999988864
No 41
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=98.60 E-value=4.3e-08 Score=93.97 Aligned_cols=63 Identities=29% Similarity=0.327 Sum_probs=58.2
Q ss_pred EEEEEeCcceeccccCCCChhHHHHHHHhCcEEEcCCCCCCCcEEEEecC----HHHHHHHHHHHHHHH
Q 012372 155 SLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNS----TDSVAKASEKIQAII 219 (465)
Q Consensus 155 ~~sI~VP~~~~r~IIGkgG~tiK~IEeETgtkI~IPr~~~sg~I~ItG~s----ke~V~~A~~rI~~Iv 219 (465)
+..+.||++.++.|||+||+++|.|+++||++|+|.. ++|.|.|.|.+ .+++.+|++.|..|+
T Consensus 35 i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~--~~g~V~I~~~~~t~d~~~i~kA~~~I~~i~ 101 (219)
T 2e3u_A 35 EEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDS--ETGEVWITSTKETEDPLAVWKARDIVLAIG 101 (219)
T ss_dssp EEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECT--TTCEEEEEECTTCCSHHHHHHHHHHHHHHH
T ss_pred EEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEc--CCCEEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 4589999999999999999999999999999999963 46899999976 799999999999998
No 42
>1vgj_A Hypothetical protein PH0099; alpha+beta, LIGT-like, structural genomics, ligase; 1.94A {Pyrococcus horikoshii} PDB: 1vdx_A 2fyh_A
Probab=98.56 E-value=4.7e-07 Score=81.38 Aligned_cols=92 Identities=18% Similarity=0.341 Sum_probs=72.5
Q ss_pred ccCCCeeeEEEeeeEeCChhHHHHHHHHHHHhHHHHHhhhCCCCcEEEEeecccCCCCCCcceEEEEeceecCCcchHHH
Q 012372 336 FIKPKTFHLTVLMLKLWNKDRVNAATNVLKSISSKVMDALDNRPLFIRLKGLDLMRGSKDKARILYAPVEEIGDGDRLLH 415 (465)
Q Consensus 336 F~~p~tLHLTLgVL~L~~~eev~kA~~~L~slk~~I~~iL~~~pL~I~LkGL~~MnddPs~a~VLYAk~~~~d~~~rL~~ 415 (465)
+.+|..|||||..+--.++++++++.+.|+.+- -...|+.|+|.|+++|+ ++.+.+|||+++.. + +.|..
T Consensus 33 ~v~~~~lHiTL~flg~~~~~~~~~l~~~l~~~~------~~~~pf~l~l~g~g~F~-~~~~p~vl~~~v~~--~-~~L~~ 102 (184)
T 1vgj_A 33 FVERENLHITLKFLGEITEEQAEEIKNILKKIA------EKYKKHEVKVKGIGVFP-NPNYIRVIWAGIEN--D-EIIRE 102 (184)
T ss_dssp ECCGGGCEEEEEEEESCCHHHHHHHHHHHHHHH------TTSBCEEEEEEEEEEEE-CSSSEEEEEEEEET--C-HHHHH
T ss_pred ecCccccEEEEEeecCCCHHHHHHHHHHHHHHH------ccCCCeEEEEeeEeeCC-CCCCCcEEEEEecC--C-HHHHH
Confidence 567899999999998778888988888887752 13479999999999997 46778999999973 2 77999
Q ss_pred HHHHHHHHHHH-------hccCCCcceEE
Q 012372 416 ACRILIAFVSS-------IFAPLCTSLII 437 (465)
Q Consensus 416 ~cq~I~d~F~e-------~F~p~~~~~i~ 437 (465)
+.+.|.+.+.. .|.||+|-.-.
T Consensus 103 L~~~l~~~l~~~g~~~~~~f~PHiTLar~ 131 (184)
T 1vgj_A 103 MAREIEDELAKLGFKKEGNFVAHITLGRV 131 (184)
T ss_dssp HHHHHHHHHHTTTCCCCCCCCCEEEEEEE
T ss_pred HHHHHHHHHHHcCCCCCCCccceEEEEee
Confidence 99999998875 25555555443
No 43
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=98.38 E-value=2.6e-07 Score=83.27 Aligned_cols=65 Identities=22% Similarity=0.361 Sum_probs=47.1
Q ss_pred EEEEEeCcce------eccccCCCChhHHHHHHHhCcEEEcCCCCC----------CC-----------cEEEEecCHH-
Q 012372 155 SLSVEVGASV------IRFIKGKEGSTQKKFEKEMGVKIILPSSKK----------ED-----------SIIIEGNSTD- 206 (465)
Q Consensus 155 ~~sI~VP~~~------~r~IIGkgG~tiK~IEeETgtkI~IPr~~~----------sg-----------~I~ItG~ske- 206 (465)
+..|.||.+. ++.|||++|.|+|+||++|||+|.|=..|+ .| -|.|+|.+.+
T Consensus 3 ~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~~ 82 (140)
T 2bl5_A 3 QEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQN 82 (140)
T ss_dssp EEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCCH
T ss_pred eeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCchh
Confidence 4456666544 789999999999999999999999965442 01 5678886554
Q ss_pred ----HHHHHHHHHHHHH
Q 012372 207 ----SVAKASEKIQAII 219 (465)
Q Consensus 207 ----~V~~A~~rI~~Iv 219 (465)
.+++|++.|+.++
T Consensus 83 ~~~~~l~~A~~~I~~lL 99 (140)
T 2bl5_A 83 RAELKLKRAVEEVKKLL 99 (140)
T ss_dssp HHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHC
Confidence 5666666665544
No 44
>1iuh_A 2'-5' RNA ligase; riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: d.61.1.2
Probab=98.03 E-value=3.6e-05 Score=70.85 Aligned_cols=81 Identities=21% Similarity=0.321 Sum_probs=62.9
Q ss_pred ccCCCeeeEEEeeeEeCChhHHHHHHHHHHHhHHHHHhhhCCCCcEEEEeecccCCCCCCcceEEEEeceecCCcchHHH
Q 012372 336 FIKPKTFHLTVLMLKLWNKDRVNAATNVLKSISSKVMDALDNRPLFIRLKGLDLMRGSKDKARILYAPVEEIGDGDRLLH 415 (465)
Q Consensus 336 F~~p~tLHLTLgVL~L~~~eev~kA~~~L~slk~~I~~iL~~~pL~I~LkGL~~MnddPs~a~VLYAk~~~~d~~~rL~~ 415 (465)
..++..+||||..+--.+++++....+.|..+.. .-.|+.|+|.|+++|.+ +...+|||+++ . ...|..
T Consensus 32 ~v~~~~~HiTL~flgev~~~~~~~l~~~l~~~~~------~~~pf~l~l~g~g~F~~-~~~p~vl~l~v-~---~~~L~~ 100 (198)
T 1iuh_A 32 PVPPHQLHLTLLFLGERPEEELPDYLALGHRLAR------LEAPFRARLRGTGYFPN-EGTPRVWFAKA-E---AEGFLR 100 (198)
T ss_dssp ECCGGGCEEEEEEEEECCGGGHHHHHHHHHHHHH------HSCCEEEEEEEEEEESS-SSSCSEEEEEE-E---CHHHHH
T ss_pred ccCCCCCEEEEEeCCcCCHHHHHHHHHHHHHHhc------cCCCeEEEEcceEECCC-CCCCCEEEEEC-C---CHHHHH
Confidence 3456889999998877788888888887777521 23799999999999974 45568999999 3 566888
Q ss_pred HHHHHHHHHHHh
Q 012372 416 ACRILIAFVSSI 427 (465)
Q Consensus 416 ~cq~I~d~F~e~ 427 (465)
+.+.|.+.+...
T Consensus 101 L~~~l~~~l~~~ 112 (198)
T 1iuh_A 101 LAEGLRAGVEEL 112 (198)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 888887777654
No 45
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=97.98 E-value=9.2e-07 Score=97.55 Aligned_cols=81 Identities=22% Similarity=0.400 Sum_probs=0.0
Q ss_pred eEEEEEeCcceeccccCCCChhHHHHHHHhCcEEEcCCCCCCCcEEEEecCHHHHHHHHHHHHHHHHHH---------hh
Q 012372 154 HSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAIIAEA---------VE 224 (465)
Q Consensus 154 ~~~sI~VP~~~~r~IIGkgG~tiK~IEeETgtkI~IPr~~~sg~I~ItG~ske~V~~A~~rI~~Iv~e~---------~k 224 (465)
-..++.||+++++.+||+||.++++|.++||+.|+| +++|.|.|.+.+.+.+.+|+++|+.++.+. +.
T Consensus 560 ~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI---~~dg~v~I~~~~~~~~~~a~~~i~~i~~~~~vG~i~~G~V~ 636 (723)
T 3cdi_A 560 RIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEI---EDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVT 636 (723)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eEEEEEECHHHhcccccccceeeeeeehhhCceEEe---cCCccEEEecCCHHHHHHHHHHHHHHhhhhhcCcEEEEEEE
Confidence 467889999999999999999999999999999999 567999999999999999999999887554 33
Q ss_pred CCCCcccceEeecc
Q 012372 225 SPSLDYSHFVSLPL 238 (465)
Q Consensus 225 k~k~~~thFVsIPl 238 (465)
+ ...|+.||.|..
T Consensus 637 ~-i~~fGaFVel~~ 649 (723)
T 3cdi_A 637 R-IVDFGAFVAIGG 649 (723)
T ss_dssp --------------
T ss_pred E-EecceEEEEeCC
Confidence 3 678899998854
No 46
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=97.95 E-value=3.4e-06 Score=75.43 Aligned_cols=94 Identities=18% Similarity=0.217 Sum_probs=72.9
Q ss_pred CCeEEEEEeCcceeccccCCCChhHHHHHHHhCcEEEcCCCCCCCcEEEEecCHHHHHHHHHHHHHHHHHHhhCCCCccc
Q 012372 152 ERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAIIAEAVESPSLDYS 231 (465)
Q Consensus 152 ~k~~~sI~VP~~~~r~IIGkgG~tiK~IEeETgtkI~IPr~~~sg~I~ItG~ske~V~~A~~rI~~Iv~e~~kk~k~~~t 231 (465)
.+++..+.||.+.++.+||+||++++.|++|+|+.|..++ ++...+++.|.+.+.|.+|+..+. - .+
T Consensus 2 ~~~~~~~~Vp~~~vG~~IG~~G~~I~~i~~e~gI~ii~~~-~~~~~~i~~~~~p~~v~~~~~~l~-------~-----~e 68 (144)
T 2qnd_A 2 SRFHEQFIVREDLMGLAIGTHGANIQQARKVPGVTAIDLD-EDTCTFHIYGEDQDAVKKARSFLE-------F-----AE 68 (144)
T ss_dssp --CEEEEECCGGGHHHHHCGGGHHHHHHHTSTTEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHC-------E-----EE
T ss_pred CceEEEEEECCcceeeEECCChhHHHHHHHHHCCeEeccC-CCchheeeccCCHHHHHHHHHhhh-------c-----ce
Confidence 4678899999999999999999999999999994443322 334668888888889988876321 1 13
Q ss_pred ceEeeccccchhhhhhHHHHHHHHhcC
Q 012372 232 HFVSLPLAVHPELVDKLVNFQNTILGI 258 (465)
Q Consensus 232 hFVsIPl~~hP~I~~~~~~Fq~sIL~~ 258 (465)
..|.+|...+..++|+-+..++.+.+.
T Consensus 69 ~~v~Vp~~~~g~~IGK~G~nIr~i~~~ 95 (144)
T 2qnd_A 69 DVIQVPRNLVGKVIGKNGKLIQEIVDK 95 (144)
T ss_dssp EEEEEEGGGHHHHHCGGGHHHHHHHHH
T ss_pred EEEEECHHHcCeeECCCCHHHHHHHHH
Confidence 677799988899999999998888664
No 47
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=97.93 E-value=1.1e-05 Score=77.26 Aligned_cols=66 Identities=18% Similarity=0.214 Sum_probs=54.0
Q ss_pred CCCeEEEEEeCcc-----------eeccccCCCChhHHHHHHHhCcEEEcCCCCCCCcEEEEecCHHHHHHHHHHHHHHH
Q 012372 151 AERHSLSVEVGAS-----------VIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAII 219 (465)
Q Consensus 151 ~~k~~~sI~VP~~-----------~~r~IIGkgG~tiK~IEeETgtkI~IPr~~~sg~I~ItG~ske~V~~A~~rI~~Iv 219 (465)
+..+...+.|+.- ..+.||||+|+|+|.||+.|||+|.|+ ...|.|.|. .++++.|++.|..++
T Consensus 115 dd~~~e~i~i~~~~v~~~~~~~~r~~GriIGk~G~tik~ie~~Tg~~I~v~----~~~v~i~G~-~~~i~~A~~~i~~li 189 (219)
T 2e3u_A 115 EGEYLEIINLTDIIIGNEKNALPRVRGRIIGRKGRTRQIIEEMSGASVSVY----GKTVAIIGN-PIQIEIAKTAIEKLA 189 (219)
T ss_dssp TTCEEEEEEGGGCC------CHHHHHHHHHCGGGHHHHHHHHHHCCEEEEE----TTEEEEEEC-HHHHHHHHHHHHHHH
T ss_pred CCccceeEEcccccccCCchhhhhhhheeECCCchHHHHHHHHhCceEEEC----CeEEEEEeC-HHHHHHHHHHHHHHH
Confidence 3345556666522 467799999999999999999999995 357999995 789999999999998
Q ss_pred HH
Q 012372 220 AE 221 (465)
Q Consensus 220 ~e 221 (465)
..
T Consensus 190 ~g 191 (219)
T 2e3u_A 190 RG 191 (219)
T ss_dssp TT
T ss_pred cC
Confidence 54
No 48
>2d4g_A Hypothetical protein BSU11850; beta barrel, alpha helix, structural genomics, unknown function; 2.30A {Bacillus subtilis}
Probab=97.83 E-value=1.8e-05 Score=70.23 Aligned_cols=81 Identities=19% Similarity=0.260 Sum_probs=59.4
Q ss_pred eEEEeeeEeCChhHHHHHHHHHHHhHHHHHhhhCCCCcEEEEeecccCCCCCCcceEEEEeceecCCcchHHHHHHHHHH
Q 012372 343 HLTVLMLKLWNKDRVNAATNVLKSISSKVMDALDNRPLFIRLKGLDLMRGSKDKARILYAPVEEIGDGDRLLHACRILIA 422 (465)
Q Consensus 343 HLTLgVL~L~~~eev~kA~~~L~slk~~I~~iL~~~pL~I~LkGL~~MnddPs~a~VLYAk~~~~d~~~rL~~~cq~I~d 422 (465)
||||..+--.++++++++.+.|+.+.. .-.|+.|+|.|+++|+ |. ..|||+++.. ...|..+.+.|.+
T Consensus 34 HiTL~f~g~~~~~~~~~l~~~l~~~~~------~~~pf~l~l~~~g~F~--~~-~~vl~l~~~~---~~~L~~L~~~l~~ 101 (171)
T 2d4g_A 34 HLTLRASFECAEEKADQLVSHLRNIAK------ESHPLVLKMTKYSSFA--PV-NNVIYIKAEP---TEELKTLNEKLYT 101 (171)
T ss_dssp CBCCSSCEECCGGGHHHHHHHHHHHHH------TCCCEEEEEEEEEECT--TT-CCCEEEEECC---CHHHHHHHHHTTS
T ss_pred eEEeecCCcCChHHHHHHHHHHHHHHc------cCCCEEEEECCcEEeC--CC-CcEEEEEccC---ChHHHHHHHHHHh
Confidence 999998876677788887777776521 3379999999999997 32 3699999963 4678777777777
Q ss_pred HHHH-----hccCCCcce
Q 012372 423 FVSS-----IFAPLCTSL 435 (465)
Q Consensus 423 ~F~e-----~F~p~~~~~ 435 (465)
.|.. .|.||+|-.
T Consensus 102 ~~~~~~~~~~f~PHiTLa 119 (171)
T 2d4g_A 102 GVLAGEQEYNFVPHVTVG 119 (171)
T ss_dssp GGGCSCCCSCCCCEEEEE
T ss_pred cccccccCCCCCCeEEee
Confidence 6642 355555544
No 49
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=97.77 E-value=9.7e-07 Score=97.81 Aligned_cols=80 Identities=19% Similarity=0.320 Sum_probs=34.6
Q ss_pred EEEEEeCcceeccccCCCChhHHHHHHHhCcEEEcCCCCCCCcEEEEecCHHHHHHHHHHHHHHH--HHH---------h
Q 012372 155 SLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAII--AEA---------V 223 (465)
Q Consensus 155 ~~sI~VP~~~~r~IIGkgG~tiK~IEeETgtkI~IPr~~~sg~I~ItG~ske~V~~A~~rI~~Iv--~e~---------~ 223 (465)
..++.||+++++.+||+||++||+|.++||+.|+| +++|.|.|.+.+.+..++|+++|+.+. .+. +
T Consensus 599 ~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI---~~dG~v~Is~~~~~~~~~a~~~i~~i~~p~~~~vG~i~~G~V 675 (757)
T 1e3p_A 599 IITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITI---EDDGTIYIGAADGPAAEAARATINGIANPTSPEVGERILGSV 675 (757)
T ss_dssp CCCC------------------CTTCCCCCSCC-----------CCCBSSHHHHCC---------------------CBE
T ss_pred eEEEEEChHHeehcccccceeeehhhHhhCCEEEe---cCCceEEEecCCHHHHHHHHHHHHHhcchhhcccccEEEEEE
Confidence 45789999999999999999999999999999999 457999999999999999999999987 333 3
Q ss_pred hCCCCcccceEeecc
Q 012372 224 ESPSLDYSHFVSLPL 238 (465)
Q Consensus 224 kk~k~~~thFVsIPl 238 (465)
.+ ...|+.||.|..
T Consensus 676 ~~-i~~fGaFV~l~~ 689 (757)
T 1e3p_A 676 VK-TTTFGAFVSLLP 689 (757)
T ss_dssp EE-CC-CSCEECCC-
T ss_pred EE-ccccEEEEEEcC
Confidence 33 678999999954
No 50
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=97.47 E-value=0.00011 Score=69.30 Aligned_cols=63 Identities=17% Similarity=0.255 Sum_probs=53.0
Q ss_pred CeEEEEEeCc----------ceeccccCCCChhHHHHHHHhCcEEEcCCCCCCCcEEEEecCHHHHHHHHHHHHHHHH
Q 012372 153 RHSLSVEVGA----------SVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAIIA 220 (465)
Q Consensus 153 k~~~sI~VP~----------~~~r~IIGkgG~tiK~IEeETgtkI~IPr~~~sg~I~ItG~ske~V~~A~~rI~~Iv~ 220 (465)
-+...++|+. ...+.|||++|.|+|.||+-|||+|.|. ...|.|.|. .++++.|++.|..++.
T Consensus 87 ~~~e~i~i~~~~~~~~~~~~r~~GrIIGk~G~tik~iE~~Tg~~I~v~----~~~v~i~G~-~~~i~~Ar~~i~~li~ 159 (191)
T 1tua_A 87 QILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVG----EYEVAIIGD-YERAMAAKQAIEMLAE 159 (191)
T ss_dssp EEEEEEETHHHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTCEEEEC----SSEEEEEEE-HHHHHHHHHHHHHHHT
T ss_pred ceeEEEEcccccccCchhHHHHhhheeCCCccHHHHHHHHHCceEEEc----CCEEEEEeC-hHHHHHHHHHHHHHHc
Confidence 3556666652 3589999999999999999999999995 348999996 7899999999998885
No 51
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=97.31 E-value=0.00026 Score=66.61 Aligned_cols=64 Identities=20% Similarity=0.321 Sum_probs=55.7
Q ss_pred EEEEEeCcceeccccCCCChhHHHHHHHhCcEEEcCCCCCCCcEEEEe----cCHHHHHHHHHHHHHHHH
Q 012372 155 SLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEG----NSTDSVAKASEKIQAIIA 220 (465)
Q Consensus 155 ~~sI~VP~~~~r~IIGkgG~tiK~IEeETgtkI~IPr~~~sg~I~ItG----~ske~V~~A~~rI~~Iv~ 220 (465)
...+.||+...+.|||++|++++.|++++|++|+|-. .++.|+|+. .+...+.+|++.|.+|..
T Consensus 5 ~~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id~--~~~~V~i~t~~~t~dp~~i~KA~dlI~ai~r 72 (191)
T 1tua_A 5 RIYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDT--ENSMVIVEPEAEGIPPVNLMKAAEVVKAISL 72 (191)
T ss_dssp CEEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEET--TTTEEEEEESSTTSCHHHHHHHHHHHHHHHH
T ss_pred ceEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEEc--CCCeEEEEeCCCCCCHHHHHHHHHHHHHHHc
Confidence 3589999999999999999999999999999999942 367888881 257899999999999884
No 52
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=96.90 E-value=0.0015 Score=58.83 Aligned_cols=68 Identities=13% Similarity=0.107 Sum_probs=57.6
Q ss_pred EEEEeCcceeccccCCCChhHHHHHHHhCcEEEcCCCCC--CCcEEEEecCHHHHHHHHHHHHHHHHHHhh
Q 012372 156 LSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK--EDSIIIEGNSTDSVAKASEKIQAIIAEAVE 224 (465)
Q Consensus 156 ~sI~VP~~~~r~IIGkgG~tiK~IEeETgtkI~IPr~~~--sg~I~ItG~ske~V~~A~~rI~~Iv~e~~k 224 (465)
..+.|...+...|+|++|+.|+.||..++|.|+|-+-+. ...|+|.|+ ...-..|+..|+.+.+--++
T Consensus 58 lVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~s~g~tEVtIfG~-~~~Q~rak~MI~sLA~~hr~ 127 (140)
T 3v69_A 58 KRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWGPERRAEIWIFGP-PPFRRDVDRMLTDLAHYCRM 127 (140)
T ss_dssp EEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECCCTTSCEEEEEESC-HHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEehhhhhcccCCCcCccchHHhhcceeEEEeccCCCCcEEEEEECC-HHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999999999999999999977655 457999997 56677888888888766554
No 53
>1jh6_A Cyclic phosphodiesterase; ADP-ribose 1'',2''-cyclic phosphate, RNA processing, 2',3'-C nucleotide phosphodiesterase, hydrolase; 1.80A {Arabidopsis thaliana} SCOP: d.61.1.1 PDB: 1fsi_A 1jh7_A*
Probab=96.54 E-value=0.0019 Score=59.09 Aligned_cols=83 Identities=10% Similarity=0.050 Sum_probs=53.9
Q ss_pred CCeeeEEEeeeEeCChhHHHHHHHHHHHhHHHHHhhhCCCCcEEEEeecccCCCCCCcceEEEEeceecCCcchHHHHHH
Q 012372 339 PKTFHLTVLMLKLWNKDRVNAATNVLKSISSKVMDALDNRPLFIRLKGLDLMRGSKDKARILYAPVEEIGDGDRLLHACR 418 (465)
Q Consensus 339 p~tLHLTLgVL~L~~~eev~kA~~~L~slk~~I~~iL~~~pL~I~LkGL~~MnddPs~a~VLYAk~~~~d~~~rL~~~cq 418 (465)
+..+|||| .=.. +. +++...+.|+++- -.-.|+.|+|.|++++. ..-+|||+++.. +..|..+.+
T Consensus 38 ~~~~HiTL-lG~~-~~-~~~~l~~~L~~~a------~~~~pf~l~l~g~g~~~---~~~rvlw~~v~~---~~~L~~L~~ 102 (189)
T 1jh6_A 38 RFVPHVTV-AVSA-YL-TADEAKKMFESAC------DGLKAYTATVDRVSTGT---FFFQCVFLLLQT---TPEVMEAGE 102 (189)
T ss_dssp CCCCCEEE-EEEE-EE-CHHHHHHHHHHHH------HTCBCEEEEEEEEEEEE---ETTEEEEEEECC---CHHHHHHHH
T ss_pred CCCCEEEE-eCCC-CC-CHHHHHHHHHHHH------hhCCCeEEEEcceeccC---ccceEEEEeecC---CHHHHHHHH
Confidence 35789999 2222 22 2444444444432 12379999999999942 345899999962 367888888
Q ss_pred HHHHHHH----HhccCCCcceE
Q 012372 419 ILIAFVS----SIFAPLCTSLI 436 (465)
Q Consensus 419 ~I~d~F~----e~F~p~~~~~i 436 (465)
.+.+.|- ..|.||+|-.-
T Consensus 103 ~v~~~~g~~~~~~f~PHlTLar 124 (189)
T 1jh6_A 103 HCKNHFNCSTTTPYMPHLSLLY 124 (189)
T ss_dssp HHHHHTTCCCCSCCCCEEEEEC
T ss_pred HHHHHhCCCCCCCCCCeEEEEE
Confidence 8887753 24777777653
No 54
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=84.62 E-value=2 Score=40.95 Aligned_cols=61 Identities=25% Similarity=0.260 Sum_probs=52.5
Q ss_pred EEEEeCcceeccccCCCChhHHHHHHHhCcEEEcCCCCCCCcEEEEecCHHHHHHHHHHHHHHH
Q 012372 156 LSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAII 219 (465)
Q Consensus 156 ~sI~VP~~~~r~IIGkgG~tiK~IEeETgtkI~IPr~~~sg~I~ItG~ske~V~~A~~rI~~Iv 219 (465)
..+.+++.+.+.++|++|..+..|.+++++.|-+ |..|-|-|.+.+.+....+.+-|+.+-
T Consensus 150 ~vv~vs~~~~~rl~~~~~~~l~~l~~~~~~~i~v---G~NG~IWi~~~~~~~~~~~~~ai~~~e 210 (235)
T 2z0s_A 150 KIVEISPAKVPRVIGRKMSMLKTLEEKTECKIFV---ARNGRIHLECPNEDLEAIAVMAIKIID 210 (235)
T ss_dssp EEEECCGGGSGGGTCGGGHHHHHHHHHHCCEEEE---ETTTEEEEECSCHHHHHHHHHHHHHHH
T ss_pred EEEEECHHHhHHHhcCcchHHHHhcccCCeEEEE---eCCCEEEEecCCHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999999999 778999999988777777666665544
No 55
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=77.15 E-value=1.7 Score=39.97 Aligned_cols=58 Identities=9% Similarity=0.076 Sum_probs=48.8
Q ss_pred EEEeCcceeccccCCCCh-hHHHHHHHhCcEEEcCCCCCCCcEEEEecCHHHHHHHHHHHHH
Q 012372 157 SVEVGASVIRFIKGKEGS-TQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQA 217 (465)
Q Consensus 157 sI~VP~~~~r~IIGkgG~-tiK~IEeETgtkI~IPr~~~sg~I~ItG~ske~V~~A~~rI~~ 217 (465)
-+.||+.+.+.++|++|. .++.|.+++++.|.+ |..|-|-|.+.+......+.+-|+.
T Consensus 94 l~~v~~~~v~rl~~~~~~~~l~~l~~~~~~ei~v---G~NG~IWi~~~~~~~~~~v~~aI~~ 152 (175)
T 2ja9_A 94 IIDVNLNFARQLLFNNDFPLLKVLAAHTKFEVAI---GLNGKIWVKCEELSNTLACYRTIME 152 (175)
T ss_dssp EEECCHHHHHHHHHCTTCCHHHHHHTTCCCEEEE---ETTTEEEEECSSHHHHHHHHHHHHH
T ss_pred EEEEcHHHhhHHhcCCCcchHHhhhccCCeEEEE---ECCcEEEEecCCHHHHHHHHHHHHH
Confidence 588999999999998888 999999999999999 8889999999876555555455544
No 56
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=75.95 E-value=3.7 Score=39.06 Aligned_cols=59 Identities=27% Similarity=0.405 Sum_probs=47.9
Q ss_pred EEEEeCcceeccccCCCChhHHHHHHHhCcEEEcCCCCCCCcEEEEecCHHHHHHHHHHHHHH
Q 012372 156 LSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAI 218 (465)
Q Consensus 156 ~sI~VP~~~~r~IIGkgG~tiK~IEeETgtkI~IPr~~~sg~I~ItG~ske~V~~A~~rI~~I 218 (465)
..+.+++.+.+.++|++|..+..|.+.+++.|.+ +..|-|-|.+.+ +....+..-|+.+
T Consensus 138 ~v~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~v---G~NG~IWi~~~~-~~~~~~~~ai~~~ 196 (229)
T 2ba0_A 138 RIVAINPARVPRVIGKKGSMIKLLKSELDVQIVV---GQNGLIWVNGDR-RKVSIAEEAIYLI 196 (229)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTCEEEE---CTTSEEEEESCH-HHHHHHHHHHHHH
T ss_pred EEEEECHHHhHHHhcCCchHHHHhcccCCeEEEE---ECCcEEEEeCCc-hhHHHHHHHHHHH
Confidence 3568999999999999999999999999999999 888999999764 3445554445433
No 57
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=75.09 E-value=1.7 Score=39.00 Aligned_cols=37 Identities=19% Similarity=0.192 Sum_probs=33.1
Q ss_pred eEEEEEeCcceeccccCCCChhHHHHHHHhCcEEEcC
Q 012372 154 HSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILP 190 (465)
Q Consensus 154 ~~~sI~VP~~~~r~IIGkgG~tiK~IEeETgtkI~IP 190 (465)
-...+-|++...+..||++|..++.|+++.|-+|+|=
T Consensus 36 dr~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV 72 (144)
T 2cxc_A 36 NRLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVV 72 (144)
T ss_dssp TEEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEE
T ss_pred CEEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEE
Confidence 3557788888899999999999999999999999983
No 58
>2fsq_A ATU0111 protein; alpha-beta barrel, structural genomics, PSI, protein structu initiative, midwest center for structural genomics; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: d.61.1.4
Probab=74.03 E-value=1.6 Score=42.44 Aligned_cols=96 Identities=15% Similarity=0.235 Sum_probs=62.4
Q ss_pred CccCCCeeeEEEeeeEeCCh-------------hHHHHHHHHHHHhHHHHHhhhCCCCcEEEEeecccCCCCCCcceEEE
Q 012372 335 IFIKPKTFHLTVLMLKLWNK-------------DRVNAATNVLKSISSKVMDALDNRPLFIRLKGLDLMRGSKDKARILY 401 (465)
Q Consensus 335 iF~~p~tLHLTLgVL~L~~~-------------eev~kA~~~L~slk~~I~~iL~~~pL~I~LkGL~~MnddPs~a~VLY 401 (465)
+|.||..+|+||.=+.-..+ +.++.+.+++.+. +...-...|+.+.+.|+... .|..
T Consensus 76 ~~lPpsS~HMTvfdgv~e~~r~~~~wP~~L~~d~~l~~~~~~~~~~---l~~~~~~~p~~~~v~~l~~~-------~v~L 145 (243)
T 2fsq_A 76 AFTPVSSLHMTVFQGVIESRRALPYWPQTLPLDTPIDAVTDYYRDR---LSTFPTLPAFNMRVTGLRPV-------GMVM 145 (243)
T ss_dssp EECCGGGCEEEEEEEEETTCCSTTSSCTTSCTTCCHHHHHHHHHHH---GGGCCCCCCCCEEEEEEETT-------EEEE
T ss_pred eeCCchhhhhhhccccccccccCCCCCccCcccchHHHHHHHHHHH---HhcccCCCCeEEEEeccccc-------eEEE
Confidence 57889999999987765332 3455555554432 22222227899999999422 4554
Q ss_pred EeceecCCcchHHHHHHHHHHHHHHhcc---CCCcceEEeeeehhHH
Q 012372 402 APVEEIGDGDRLLHACRILIAFVSSIFA---PLCTSLIIKMKQYYII 445 (465)
Q Consensus 402 Ak~~~~d~~~rL~~~cq~I~d~F~e~F~---p~~~~~i~~~~~~~~~ 445 (465)
++.. ..+..+| ..+|++|.+.+. |+.-...-|+++-|..
T Consensus 146 ~Pad-e~~~~~L----~~~R~~l~q~lGi~~p~hd~y~fHITLgY~~ 187 (243)
T 2fsq_A 146 KGAT-AEDDSIV----ALWRDTFADFFGYRHPDHDTYEFHITLSYIV 187 (243)
T ss_dssp EESS-HHHHHHH----HHHHHHHHHHHTCCCTTGGGCCEEEECEEES
T ss_pred ecCC-HHHHHHH----HHHHHHHHHHhCCCCCCCcceEEEEEEEecc
Confidence 4443 2234455 788999999766 5566778999999976
No 59
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=66.28 E-value=1.4 Score=39.70 Aligned_cols=38 Identities=13% Similarity=0.078 Sum_probs=35.1
Q ss_pred CCeEEEEEeCcceeccccCCCChhHHHHHHHhCcEEEc
Q 012372 152 ERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIIL 189 (465)
Q Consensus 152 ~k~~~sI~VP~~~~r~IIGkgG~tiK~IEeETgtkI~I 189 (465)
+.....+.||+.-.+..|||+|.++|-..+=||.+|+|
T Consensus 101 ~~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~idI 138 (144)
T 2cxc_A 101 GVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFGV 138 (144)
T ss_dssp TEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHCE
T ss_pred CcEEEEEEEChHHhhhccCCCCHHHHHHHHHhCCeeCc
Confidence 35677899999999999999999999999999999988
No 60
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=63.12 E-value=1.9 Score=42.75 Aligned_cols=57 Identities=11% Similarity=0.163 Sum_probs=48.2
Q ss_pred EEEeCcceeccccCCCChhHHHHHHHhCcEEEcCCCCCCCcEEEEecCHHHHHHHHHHHH
Q 012372 157 SVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQ 216 (465)
Q Consensus 157 sI~VP~~~~r~IIGkgG~tiK~IEeETgtkI~IPr~~~sg~I~ItG~ske~V~~A~~rI~ 216 (465)
-++||+.+.+.++|+++..++.|.+.+++.|.+ |..|-|-|.+.+......+.+-|.
T Consensus 213 l~~Vs~~lvrrl~~~~~~~l~~L~~~~~~eI~v---G~NG~IWI~~~~~~~~~~i~~aI~ 269 (289)
T 2nn6_G 213 LFKVTLGLIRKLLAPDCEIIQEVGKLYPLEIVF---GMNGRIWVKAKTIQQTLILANILE 269 (289)
T ss_dssp EECCCHHHHHHHHCTTCSHHHHTTCSSSCCCEE---ETTTEEEECCSSHHHHHHHHHHHH
T ss_pred EEEEChHHhhhhhcCchhHHHHhcccCCeEEEE---ECCcEEEEecCChhHHHHHHHHHH
Confidence 588999999999999999999999999999999 888999999987655555544443
No 61
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=61.67 E-value=2.1 Score=38.84 Aligned_cols=35 Identities=17% Similarity=0.030 Sum_probs=29.6
Q ss_pred CeEEEEEeCcceeccccCCCChhHHHH-HHHh--------Cc---EEEcC
Q 012372 153 RHSLSVEVGASVIRFIKGKEGSTQKKF-EKEM--------GV---KIILP 190 (465)
Q Consensus 153 k~~~sI~VP~~~~r~IIGkgG~tiK~I-EeET--------gt---kI~IP 190 (465)
....++.|||++++.+|| .+++++ .++| |+ .|+|-
T Consensus 6 ~l~~~i~I~P~~~~~~i~---~~I~~~L~~~~~gk~~~~~G~~i~~idi~ 52 (187)
T 1go3_E 6 EIADVVKVPPEEFGKDLK---ETVKKILMEKYEGRLDKDVGFVLSIVDVK 52 (187)
T ss_dssp EEEEEEEECGGGTTSCHH---HHHHHHHHHHHTTCEETTTEEEEEEEEEE
T ss_pred EEEEEEEECHHHhCccHH---HHHHHHHHHHhCCeEcCCccEEEEEEEEe
Confidence 346689999999999999 689995 9999 98 67773
No 62
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=56.47 E-value=1.3 Score=42.87 Aligned_cols=55 Identities=16% Similarity=0.164 Sum_probs=39.0
Q ss_pred EEEEeCcceeccccCCCChhHHHHHHHhCcEEEcCCCCCCCcEEEEecCHHHHHHHHH
Q 012372 156 LSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASE 213 (465)
Q Consensus 156 ~sI~VP~~~~r~IIGkgG~tiK~IEeETgtkI~IPr~~~sg~I~ItG~ske~V~~A~~ 213 (465)
..+.+++.+.+.++|++|..+..|.+.+++.|.+ +..|-|-|.+.+...+..+.+
T Consensus 157 ~v~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~v---G~NG~IWi~~~~~~~~~~~~~ 211 (251)
T 2je6_I 157 IVIDIMPVKVPRVIGKNKSMYETLTSKSGCSIFV---ANNGRIWATCPSRFSEEILIE 211 (251)
T ss_dssp CEEECCGGGHHHHHCGGGHHHHHHHTTC---CEE---CTTSEEEC-----CTTCCTHH
T ss_pred EEEEECHHHhHHHhcCcchHHHHhcccCCeEEEE---ECCcEEEEeCCCHHHHHHHHH
Confidence 3568999999999999999999999999999999 888999998865444333333
No 63
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=49.50 E-value=9.6 Score=37.22 Aligned_cols=38 Identities=21% Similarity=0.247 Sum_probs=35.2
Q ss_pred eEEEEEeCcceeccccCCCChhHHHHHHHhCcEEEcCC
Q 012372 154 HSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPS 191 (465)
Q Consensus 154 ~~~sI~VP~~~~r~IIGkgG~tiK~IEeETgtkI~IPr 191 (465)
....+.||.+-...-|||+|.++|---.=||.+|+|-+
T Consensus 184 ~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~ 221 (251)
T 2asb_A 184 RAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRG 221 (251)
T ss_dssp TEEEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEE
T ss_pred cEEEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecceE
Confidence 46789999999999999999999999999999999943
No 64
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=44.52 E-value=12 Score=37.85 Aligned_cols=39 Identities=26% Similarity=0.279 Sum_probs=35.9
Q ss_pred CCeEEEEEeCcceeccccCCCChhHHHHHHHhCcEEEcC
Q 012372 152 ERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILP 190 (465)
Q Consensus 152 ~k~~~sI~VP~~~~r~IIGkgG~tiK~IEeETgtkI~IP 190 (465)
......+.||+.-...-|||+|.++|---.=||.+|+|-
T Consensus 301 ~~~~~~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~ 339 (344)
T 1hh2_P 301 ENKAARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIK 339 (344)
T ss_dssp TTTEEEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEE
T ss_pred CCCEEEEEEChHHcchhhcCCCccHHHHHHHHCCEecee
Confidence 456788999999999999999999999999999999983
No 65
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=42.21 E-value=14 Score=37.93 Aligned_cols=39 Identities=21% Similarity=0.236 Sum_probs=35.7
Q ss_pred CeEEEEEeCcceeccccCCCChhHHHHHHHhCcEEEcCC
Q 012372 153 RHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPS 191 (465)
Q Consensus 153 k~~~sI~VP~~~~r~IIGkgG~tiK~IEeETgtkI~IPr 191 (465)
.....+.||+.-.+..|||+|.++|-.-.=||.+|+|-+
T Consensus 306 ~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~ 344 (366)
T 1k0r_A 306 ARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRG 344 (366)
T ss_dssp TTEEEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEE
T ss_pred CcEEEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeE
Confidence 456789999999999999999999999999999999943
No 66
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=36.77 E-value=16 Score=33.03 Aligned_cols=60 Identities=17% Similarity=0.193 Sum_probs=40.1
Q ss_pred EEEEEeCcceeccccCCCChhHHHHHHHh--------CcEEEcCCCCCCCcEEEEecCHHHHHHHHHHHHHHHHHHhh
Q 012372 155 SLSVEVGASVIRFIKGKEGSTQKKFEKEM--------GVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAIIAEAVE 224 (465)
Q Consensus 155 ~~sI~VP~~~~r~IIGkgG~tiK~IEeET--------gtkI~IPr~~~sg~I~ItG~ske~V~~A~~rI~~Iv~e~~k 224 (465)
...+++.-+-.+.||||.|.|+..|+-=+ +.+|.+ -|.| =++.-++..+++..=+++.++
T Consensus 34 ~i~i~i~ged~glLIGK~G~TL~ALQyL~~~~vn~~~~~~V~L---------Dve~-YRerReetL~~lA~~~A~kV~ 101 (152)
T 2pt7_G 34 VLLIDIDGEDSALLIGEKGYRYKALSYLLFNWIHPTYGYSIRL---------EIST-FLQNQEKVMDTQLQSVIMTVH 101 (152)
T ss_dssp EEEEEEEEGGGTTTTCGGGHHHHHHHHHHHHHHHHHHSCEEEE---------EETT-HHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCcceEECCCCcchHHHHHHHHHHhhhcCCceEEE---------EhHH-hHHHHHHHHHHHHHHHHHHHH
Confidence 45677788999999999999999998433 333333 1222 255666666666666666554
No 67
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=32.82 E-value=16 Score=30.16 Aligned_cols=30 Identities=10% Similarity=0.162 Sum_probs=21.6
Q ss_pred EEEEeCcceeccccCCCChhHHHHHHHhCc
Q 012372 156 LSVEVGASVIRFIKGKEGSTQKKFEKEMGV 185 (465)
Q Consensus 156 ~sI~VP~~~~r~IIGkgG~tiK~IEeETgt 185 (465)
+.|.|-...-+.+||++|+.+++|..+-.-
T Consensus 37 i~I~I~tarPg~vIGkkG~~Ie~L~~~l~k 66 (92)
T 1wh9_A 37 TEIIILATRTQNVLGEKGRRIRELTAVVQK 66 (92)
T ss_dssp EEEEEEESCHHHHHCGGGHHHHHHHHHHHH
T ss_pred EEEEEEeCCCceEEcCCcHHHHHHHHHHHH
Confidence 344455566799999999988888765443
No 68
>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1
Probab=30.45 E-value=22 Score=30.61 Aligned_cols=30 Identities=23% Similarity=0.399 Sum_probs=24.4
Q ss_pred CCcEEEEec----CHHHHHHHHHHHHHHHHHHhh
Q 012372 195 EDSIIIEGN----STDSVAKASEKIQAIIAEAVE 224 (465)
Q Consensus 195 sg~I~ItG~----ske~V~~A~~rI~~Iv~e~~k 224 (465)
+|.|+|+.. ...+.+.|.+++..++.++..
T Consensus 75 ~G~ivv~~q~~RSQ~~Nr~~Al~rL~~~l~~a~~ 108 (112)
T 1j26_A 75 AGELVLTSESSRYQFRNLAECLQKIRDMIAEASG 108 (112)
T ss_dssp SSEEEEEECCCSSHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCeEEEEECCccCHHHHHHHHHHHHHHHHHHhhc
Confidence 577999884 357899999999999988654
No 69
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=28.14 E-value=29 Score=33.41 Aligned_cols=27 Identities=22% Similarity=0.224 Sum_probs=22.6
Q ss_pred CeEEEEEeCcceecc-ccCCCChhHHHH
Q 012372 153 RHSLSVEVGASVIRF-IKGKEGSTQKKF 179 (465)
Q Consensus 153 k~~~sI~VP~~~~r~-IIGkgG~tiK~I 179 (465)
.+...|-|..+-++- |||++|++||+|
T Consensus 239 ~i~a~i~ve~~~~k~i~ig~~g~~ik~i 266 (308)
T 3iev_A 239 VIKGEIIVDRENLKPIIIGKKGQRLKEI 266 (308)
T ss_dssp EEEEEEEESSGGGHHHHHCGGGHHHHHH
T ss_pred EEEEEEEEccCCcceEEEcCCcHHHHHH
Confidence 577888898886654 899999999987
No 70
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=25.31 E-value=28 Score=33.62 Aligned_cols=27 Identities=15% Similarity=0.139 Sum_probs=20.7
Q ss_pred eEEEEEeCccee-ccccCCCChhHHHHH
Q 012372 154 HSLSVEVGASVI-RFIKGKEGSTQKKFE 180 (465)
Q Consensus 154 ~~~sI~VP~~~~-r~IIGkgG~tiK~IE 180 (465)
....|.|..+-| +.|||++|+++|+|.
T Consensus 230 i~~~i~ve~~~~k~iiig~~g~~lk~i~ 257 (301)
T 1wf3_A 230 IKAILYVERPSQKAIVIGEGGRKIKEIG 257 (301)
T ss_dssp EEEEEEESSHHHHHHHHCGGGHHHHHHH
T ss_pred EEEEEEEeeCCceEEEEeCCchHHHHHH
Confidence 455677776655 578999999999883
No 71
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C
Probab=23.00 E-value=64 Score=30.75 Aligned_cols=31 Identities=16% Similarity=0.327 Sum_probs=26.6
Q ss_pred CCCcEEEEec-CHHHHHHHHHHHHHHHHHHhh
Q 012372 194 KEDSIIIEGN-STDSVAKASEKIQAIIAEAVE 224 (465)
Q Consensus 194 ~sg~I~ItG~-ske~V~~A~~rI~~Iv~e~~k 224 (465)
.+|.|+|||. +.+.+..|.+.|..++.+.++
T Consensus 186 ~SGKiviTGaks~~d~~~A~~~I~p~L~~frk 217 (218)
T 3eik_A 186 VSGKIVLTGAKVRDDIYQAFNNIYPVLIQHRK 217 (218)
T ss_dssp TTSEEEEEEESSHHHHHHHHHHHHHHHHHTBC
T ss_pred CCCeEEEEecCCHHHHHHHHHHHHHHHHHhhc
Confidence 3789999996 689999999999999988553
No 72
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex, transcription/DNA complex; HET: DNA; 1.80A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A* 1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A* 1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E* ...
Probab=21.16 E-value=76 Score=29.17 Aligned_cols=30 Identities=20% Similarity=0.355 Sum_probs=25.8
Q ss_pred CCCcEEEEec-CHHHHHHHHHHHHHHHHHHh
Q 012372 194 KEDSIIIEGN-STDSVAKASEKIQAIIAEAV 223 (465)
Q Consensus 194 ~sg~I~ItG~-ske~V~~A~~rI~~Iv~e~~ 223 (465)
.+|.|+|||. +.+.+.+|.+.|..++.+.+
T Consensus 148 ~SGkivitGak~~~~~~~a~~~i~p~L~~~~ 178 (180)
T 1ytb_A 148 VSGKIVLTGAKQREEIYQAFEAIYPVLSEFR 178 (180)
T ss_dssp TTSEEEEEEESSHHHHHHHHHHHHHHHHHTB
T ss_pred cCCeEEEEecCCHHHHHHHHHHHHHHHHHHh
Confidence 3799999996 77899999999999988744
No 73
>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein STRU initiative; NMR {Pseudomonas syringae PV}
Probab=20.96 E-value=1.1e+02 Score=26.06 Aligned_cols=30 Identities=17% Similarity=0.353 Sum_probs=24.4
Q ss_pred CCcEEEEec----CHHHHHHHHHHHHHHHHHHhh
Q 012372 195 EDSIIIEGN----STDSVAKASEKIQAIIAEAVE 224 (465)
Q Consensus 195 sg~I~ItG~----ske~V~~A~~rI~~Iv~e~~k 224 (465)
+|.|+|++. ...+.+.|.+++..++.++..
T Consensus 67 ~G~ivv~~q~~RSQ~~Nr~~Al~rL~~~l~~a~~ 100 (108)
T 2jva_A 67 DGVIVLKAQQYRTQEQNRADALLRLSELIVNAAK 100 (108)
T ss_dssp TCEEEEEECCSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCcCCHHHHHHHHHHHHHHHHHHHcc
Confidence 466888884 457889999999999998766
Done!