BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 012373
         (465 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P39529|YJU6_YEAST Putative transcriptional regulatory protein YJL206C
           OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
           GN=YJL206C PE=2 SV=1
          Length = 758

 Score = 36.6 bits (83), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 51/114 (44%), Gaps = 21/114 (18%)

Query: 227 CEG-IRIREAKTEAFTVKDHRGELYKKHYPPALNDDVWRLEKIGKDGSF------HKRLN 279
           C G I  R  +T ++  K  R         P  N  V+  E +  D S       H+R +
Sbjct: 57  CSGNIPCRLCQTNSYECKYDR---------PPRNSSVFDRE-VSDDSSLYAQRASHERED 106

Query: 280 NAGIFSVEDFLRLV--VRDPQKLRSILGSGMSNKMWEALLDHAKTCVLSGKLYV 331
           + G  S  D+ ++V  +  P+ LR IL S   N   +  LD  KTC+L G+L V
Sbjct: 107 SKGPISSIDYKKVVETIFPPETLRQILASSSFNS--QNFLDTIKTCLLQGQLNV 158


>sp|Q0KK55|VKIND_MOUSE Protein very KIND OS=Mus musculus GN=Kndc1 PE=1 SV=2
          Length = 1742

 Score = 33.1 bits (74), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 13/85 (15%)

Query: 31  RKRPALASVIV---EALKVDSLQKLCSSLEPILRRVVSEEVERALAKLG-------PARL 80
           R+RP LAS+I    E ++  S  +LC SL  I RRV+S E   A  +L        PA  
Sbjct: 163 RERPDLASIIALCEEKMQPVSSCRLCRSLSAIGRRVLSIESFGAFQELSENTWRGRPAPR 222

Query: 81  NNGRASPKRIEGPDGRNLQLYFRSR 105
           N G   PK++ G    + +  F S+
Sbjct: 223 NVG---PKKMPGDLSTDPEALFPSK 244


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.134    0.386 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 179,026,102
Number of Sequences: 539616
Number of extensions: 7844103
Number of successful extensions: 21100
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 21099
Number of HSP's gapped (non-prelim): 6
length of query: 465
length of database: 191,569,459
effective HSP length: 121
effective length of query: 344
effective length of database: 126,275,923
effective search space: 43438917512
effective search space used: 43438917512
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 63 (28.9 bits)