Query 012373
Match_columns 465
No_of_seqs 134 out of 157
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 08:11:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012373.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012373hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wcn_A Transcription elongatio 92.5 0.031 1E-06 44.5 0.7 62 258-326 5-67 (70)
2 2kz3_A Putative uncharacterize 91.1 0.16 5.3E-06 41.9 3.5 40 275-319 17-56 (83)
3 3mab_A Uncharacterized protein 78.8 0.52 1.8E-05 39.5 0.7 74 264-376 8-81 (93)
4 3lda_A DNA repair protein RAD5 78.4 1.2 4.1E-05 45.4 3.3 62 260-326 81-142 (400)
5 2i1q_A DNA repair and recombin 75.3 1.1 3.6E-05 43.0 1.8 59 260-325 3-61 (322)
6 2z43_A DNA repair and recombin 74.5 0.65 2.2E-05 45.0 0.2 57 261-324 13-69 (324)
7 1b22_A DNA repair protein RAD5 72.4 0.72 2.5E-05 39.9 -0.1 62 261-327 24-85 (114)
8 1v5w_A DMC1, meiotic recombina 70.4 0.97 3.3E-05 44.3 0.3 58 261-323 26-83 (343)
9 1pzn_A RAD51, DNA repair and r 68.8 3.5 0.00012 40.7 3.9 58 261-325 36-93 (349)
10 3bqs_A Uncharacterized protein 56.9 2.2 7.6E-05 35.6 -0.0 74 264-376 8-81 (93)
11 4dez_A POL IV 1, DNA polymeras 54.6 2.6 8.7E-05 41.6 -0.0 38 264-306 182-219 (356)
12 3pzp_A DNA polymerase kappa; D 47.8 8.4 0.00029 40.6 2.6 51 262-322 340-390 (517)
13 3im1_A Protein SNU246, PRE-mRN 47.4 10 0.00036 36.9 3.0 55 261-322 158-212 (328)
14 3osn_A DNA polymerase IOTA; ho 46.2 4.2 0.00014 41.6 -0.0 47 267-322 241-287 (420)
15 2aq4_A DNA repair protein REV1 43.5 8.1 0.00028 39.4 1.6 52 262-321 243-296 (434)
16 1t94_A Polymerase (DNA directe 41.8 13 0.00043 38.2 2.7 50 262-321 284-333 (459)
17 2q0z_X Protein Pro2281; SEC63, 38.4 24 0.00082 34.6 4.0 55 261-322 162-216 (339)
18 1z3e_B DNA-directed RNA polyme 35.6 20 0.00069 28.6 2.4 36 276-316 22-57 (73)
19 4f4y_A POL IV, DNA polymerase 34.8 5.9 0.0002 39.5 -1.0 46 267-321 186-231 (362)
20 3k4g_A DNA-directed RNA polyme 33.8 27 0.00091 28.9 2.9 38 276-318 25-62 (86)
21 1jx4_A DNA polymerase IV (fami 32.8 6.1 0.00021 38.9 -1.3 54 262-324 180-233 (352)
22 3gqc_A DNA repair protein REV1 32.3 7.3 0.00025 41.1 -0.9 51 262-321 317-367 (504)
23 3bq0_A POL IV, DBH, DNA polyme 29.7 6.1 0.00021 38.9 -1.9 54 262-324 181-234 (354)
24 1u9l_A Transcription elongatio 27.7 28 0.00097 27.4 2.0 50 271-325 15-64 (70)
25 2va8_A SSO2462, SKI2-type heli 23.7 34 0.0012 36.2 2.3 48 264-321 661-708 (715)
26 3gfk_B DNA-directed RNA polyme 23.6 23 0.00077 28.9 0.7 36 276-316 29-64 (79)
27 1tqz_A Necap1; endocytosis, st 22.2 29 0.001 31.0 1.2 34 106-139 38-71 (133)
28 3euh_C MUKE, chromosome partit 21.1 1E+02 0.0035 29.9 4.8 74 276-349 107-186 (234)
No 1
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=92.46 E-value=0.031 Score=44.48 Aligned_cols=62 Identities=26% Similarity=0.426 Sum_probs=50.8
Q ss_pred CCccceeeeeeccCchhhhhhhhcCCccHHHHHHHhhcChHHHHHHHcCCCChhhHHHHHHHhcc-cccC
Q 012373 258 LNDDVWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAKT-CVLS 326 (465)
Q Consensus 258 L~DeVwRLekIgKdG~~hkrL~~~~I~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAkt-Cvl~ 326 (465)
..|++-.|++|+..-+ ++|.++||+||+|+..+ +++.|-.|. |+|...=+.++.-|+. |-+.
T Consensus 5 ~~~~l~~L~Gi~~~~~--~kL~e~Gi~TvedlA~~---~~~eL~~i~--gise~kA~~ii~aAr~~~w~~ 67 (70)
T 1wcn_A 5 PADDLLNLEGVDRDLA--FKLAARGVCTLEDLAEQ---GIDDLADIE--GLTDEKAGALIMAARNICWFG 67 (70)
T ss_dssp CCHHHHSSTTCCHHHH--HHHHTTTCCSHHHHHTS---CHHHHHTSS--SCCHHHHHHHHHHHHHHHTTC
T ss_pred hhhHHHHcCCCCHHHH--HHHHHcCCCcHHHHHcC---CHHHHHHcc--CCCHHHHHHHHHHHHHccCcc
Confidence 4567778887776544 89999999999998665 788898887 8999999999999998 7553
No 2
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}
Probab=91.13 E-value=0.16 Score=41.92 Aligned_cols=40 Identities=25% Similarity=0.222 Sum_probs=31.1
Q ss_pred hhhhhhcCCccHHHHHHHhhcChHHHHHHHcCCCChhhHHHHHHH
Q 012373 275 HKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDH 319 (465)
Q Consensus 275 hkrL~~~~I~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~H 319 (465)
-++|.+++|.||+||+.+ |+.+|.+++ |+|-+.=-.+..|
T Consensus 17 ~~~L~~~~I~Tv~Dfl~~---d~~eL~~~~--~ls~~~v~~l~r~ 56 (83)
T 2kz3_A 17 IQLLRSHRIKTVVDLVSA---DLEEVAQKC--GLSYKALVALRRV 56 (83)
T ss_dssp HHHHHHTTCCCHHHHTTS---CHHHHHHHH--TCCHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHhC---CHHHHHHHh--CCCHHHHHHHHHH
Confidence 478999999999999865 999999999 5665554444443
No 3
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=78.75 E-value=0.52 Score=39.52 Aligned_cols=74 Identities=22% Similarity=0.403 Sum_probs=49.8
Q ss_pred eeeeeccCchhhhhhhhcCCccHHHHHHHhhcChHHHHHHHcCCCChhhHHHHHHHhcccccCCceEEEeeCCCCcEEEE
Q 012373 264 RLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAKTCVLSGKLYVYYPEDSRNVGVV 343 (465)
Q Consensus 264 RLekIgKdG~~hkrL~~~~I~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAktCvl~~k~y~y~~~~~~~v~l~ 343 (465)
.|-+||+. .-+.|.+.||.||+||..+ ++ .+.|..+.++- .+ +-
T Consensus 8 dLPNig~~--~e~~L~~~GI~t~~~Lr~~---Ga------------~~ay~rLk~~~-----------------~~--~~ 51 (93)
T 3mab_A 8 ELPNIGKV--LEQDLIKAGIKTPVELKDV---GS------------KEAFLRIWEND-----------------SS--VC 51 (93)
T ss_dssp GSTTCCHH--HHHHHHHTTCCSHHHHHHH---CH------------HHHHHHHHHHC-----------------TT--CC
T ss_pred hCCCCCHH--HHHHHHHcCCCCHHHHHhC---CH------------HHHHHHHHHhC-----------------CC--CC
Confidence 34445553 3388999999999999877 22 34444443320 11 22
Q ss_pred EccccceeeeeeCCeeecCCCCChhhHHHHHHH
Q 012373 344 FNNIYELNGLISGEQYFPADALPESQKVYVDSQ 376 (465)
Q Consensus 344 FN~i~~lvGa~~~g~y~s~d~L~~~qk~~V~~L 376 (465)
+|..|.|+||+-| +....|++.+|..+.++
T Consensus 52 ~~~L~aL~gAi~G---~~w~~l~~~~K~~L~~~ 81 (93)
T 3mab_A 52 MSELYALEGAVQG---IRWHGLDEAKKIELKKF 81 (93)
T ss_dssp HHHHHHHHHHHHT---SCGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC---CcHHHCCHHHHHHHHHH
Confidence 7889999999988 66788999988776554
No 4
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=78.38 E-value=1.2 Score=45.37 Aligned_cols=62 Identities=23% Similarity=0.222 Sum_probs=50.2
Q ss_pred ccceeeeeeccCchhhhhhhhcCCccHHHHHHHhhcChHHHHHHHcCCCChhhHHHHHHHhcccccC
Q 012373 260 DDVWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAKTCVLS 326 (465)
Q Consensus 260 DeVwRLekIgKdG~~hkrL~~~~I~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAktCvl~ 326 (465)
.+|-+|+..|-.-..-++|.++||+||++|+.. ++..|.++. |+|...=+.+++.|++++..
T Consensus 81 ~~~~~l~~~gi~~~~~~~L~~ag~~tv~~~~~~---~~~~L~~~~--gis~~~~~~i~~~a~~~~~~ 142 (400)
T 3lda_A 81 VPIEKLQVNGITMADVKKLRESGLHTAEAVAYA---PRKDLLEIK--GISEAKADKLLNEAARLVPM 142 (400)
T ss_dssp CBGGGGCCTTCCHHHHHHHHHTTCCBHHHHHHS---CHHHHHTST--TCCHHHHHHHHHHHHHHSCC
T ss_pred cCHHHHHhCCCCHHHHHHHHHcCCCcHHHHHhC---CHHHHHHHh--CCCHHHHHHHHHHHHHhccc
Confidence 467788886655566699999999999999864 888999987 78888888888888876543
No 5
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=75.30 E-value=1.1 Score=43.00 Aligned_cols=59 Identities=22% Similarity=0.253 Sum_probs=43.3
Q ss_pred ccceeeeeeccCchhhhhhhhcCCccHHHHHHHhhcChHHHHHHHcCCCChhhHHHHHHHhccccc
Q 012373 260 DDVWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAKTCVL 325 (465)
Q Consensus 260 DeVwRLekIgKdG~~hkrL~~~~I~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAktCvl 325 (465)
+++..|++|+. ..-++|.++||+||+||+.+ ++..|-++. |+|.+.=+.+++.|+.+..
T Consensus 3 ~~~~~l~gi~~--~~~~kL~~~gi~t~~~~~~~---~~~~L~~~~--gis~~~a~~~i~~a~~~~~ 61 (322)
T 2i1q_A 3 DNLTDLPGVGP--STAEKLVEAGYIDFMKIATA---TVGELTDIE--GISEKAAAKMIMGARDLCD 61 (322)
T ss_dssp --CTTSTTCCH--HHHHHHHHHTCCSHHHHHTC---CHHHHHTST--TCCHHHHHHHHHHHHHHTT
T ss_pred ccHhhcCCCCH--HHHHHHHHcCCCcHHHHHhC---CHHHHHHhh--CcCHHHHHHHHHHHHHhhh
Confidence 45666775544 46699999999999999865 577777775 6788877778888877643
No 6
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=74.54 E-value=0.65 Score=44.96 Aligned_cols=57 Identities=21% Similarity=0.302 Sum_probs=0.0
Q ss_pred cceeeeeeccCchhhhhhhhcCCccHHHHHHHhhcChHHHHHHHcCCCChhhHHHHHHHhcccc
Q 012373 261 DVWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAKTCV 324 (465)
Q Consensus 261 eVwRLekIgKdG~~hkrL~~~~I~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAktCv 324 (465)
++.+|.+|+.. .-++|.++||+||++|+.. ++..|-++. |+|...=+.+++.|..+.
T Consensus 13 ~~~~l~g~~~~--~~~~l~~~g~~t~~~~~~~---~~~~l~~~~--g~s~~~~~~~~~~~~~~~ 69 (324)
T 2z43_A 13 TINDLPGISQT--VINKLIEAGYSSLETLAVA---SPQDLSVAA--GIPLSTAQKIIKEARDAL 69 (324)
T ss_dssp ----------------------------------------------------------------
T ss_pred cHHHcCCCCHH--HHHHHHHcCCCcHHHHHcC---CHHHHHHhh--CCCHHHHHHHHHHHHhhc
Confidence 67888866654 4589999999999999865 455666665 566666666666666543
No 7
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=72.38 E-value=0.72 Score=39.90 Aligned_cols=62 Identities=29% Similarity=0.380 Sum_probs=50.3
Q ss_pred cceeeeeeccCchhhhhhhhcCCccHHHHHHHhhcChHHHHHHHcCCCChhhHHHHHHHhcccccCC
Q 012373 261 DVWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAKTCVLSG 327 (465)
Q Consensus 261 eVwRLekIgKdG~~hkrL~~~~I~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAktCvl~~ 327 (465)
+|.+|+..|-.-+.-++|.++|++||++. ...++..|.+|- |+|...=+.+++=|+.++..+
T Consensus 24 ~I~~L~~~GIg~~~i~kL~eAG~~Tve~v---a~a~~~eL~~i~--GIse~ka~kIi~aA~kl~~~g 85 (114)
T 1b22_A 24 PISRLEQCGINANDVKKLEEAGFHTVEAV---AYAPKKELINIK--GISEAKADKILAEAAKLVPMG 85 (114)
T ss_dssp CHHHHHHTTCSHHHHHHHHTTCCSSGGGB---TSSBHHHHHTTT--TCSTTHHHHHHHHHHHHSCCC
T ss_pred cHHHHHhcCCCHHHHHHHHHcCcCcHHHH---HhCCHHHHHHcc--CCCHHHHHHHHHHHHHHcccC
Confidence 68889965544566799999999999976 455788999986 789999999999999877544
No 8
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=70.37 E-value=0.97 Score=44.35 Aligned_cols=58 Identities=21% Similarity=0.274 Sum_probs=0.0
Q ss_pred cceeeeeeccCchhhhhhhhcCCccHHHHHHHhhcChHHHHHHHcCCCChhhHHHHHHHhccc
Q 012373 261 DVWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAKTC 323 (465)
Q Consensus 261 eVwRLekIgKdG~~hkrL~~~~I~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAktC 323 (465)
++++|+.-|-.=..-++|.++||+||++|+.. ++.+|.++. |+|...=+.+++.|..+
T Consensus 26 ~~~~l~~~g~~~~~~~~l~~~g~~t~~~~~~~---~~~~l~~~~--~is~~~~~~~~~~a~~~ 83 (343)
T 1v5w_A 26 DIDLLQKHGINVADIKKLKSVGICTIKGIQMT---TRRALCNVK--GLSEAKVDKIKEAANKL 83 (343)
T ss_dssp ---------------------------------------------------------------
T ss_pred cHHHHhhCCCCHHHHHHHHHcCCCcHHHHHhC---CHHHHHHhh--CCCHHHHHHHHHHHHhh
Confidence 68899955544456689999999999999855 555666665 55655555566666544
No 9
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=68.80 E-value=3.5 Score=40.70 Aligned_cols=58 Identities=19% Similarity=0.301 Sum_probs=44.9
Q ss_pred cceeeeeeccCchhhhhhhhcCCccHHHHHHHhhcChHHHHHHHcCCCChhhHHHHHHHhccccc
Q 012373 261 DVWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAKTCVL 325 (465)
Q Consensus 261 eVwRLekIgKdG~~hkrL~~~~I~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAktCvl 325 (465)
++.+|.+|+ -...++|.++||+||++++.+ ++..|-++. |+|...=+.+++.|.++..
T Consensus 36 ~l~~l~Gi~--~~~~~kL~~ag~~t~~~~~~~---~~~~L~~~~--~~s~~~~~~~l~~~~~~~~ 93 (349)
T 1pzn_A 36 SIEDLPGVG--PATAEKLREAGYDTLEAIAVA---SPIELKEVA--GISEGTALKIIQAARKAAN 93 (349)
T ss_dssp CSSCCTTCC--HHHHHHHHTTTCCSHHHHHTC---CHHHHHHHH--CCCHHHHHHHHHHHHHHCS
T ss_pred cHHHcCCCC--HHHHHHHHHcCCCcHHHHHhC---CHHHHHhhc--CCCHHHHHHHHHHHhhhcc
Confidence 466666444 467799999999999998765 788888887 6787777888888876653
No 10
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=56.89 E-value=2.2 Score=35.61 Aligned_cols=74 Identities=22% Similarity=0.406 Sum_probs=48.2
Q ss_pred eeeeeccCchhhhhhhhcCCccHHHHHHHhhcChHHHHHHHcCCCChhhHHHHHHHhcccccCCceEEEeeCCCCcEEEE
Q 012373 264 RLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAKTCVLSGKLYVYYPEDSRNVGVV 343 (465)
Q Consensus 264 RLekIgKdG~~hkrL~~~~I~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAktCvl~~k~y~y~~~~~~~v~l~ 343 (465)
.|-.||+. .-+.|.+.||+||+||..+ ++ .++|..+.+. ... +-
T Consensus 8 ~LPNiG~~--~e~~L~~vGI~s~e~L~~~---Ga------------~~ay~rL~~~-----------------~~~--~c 51 (93)
T 3bqs_A 8 ELPNIGKV--LEQDLIKAGIKTPVELKDV---GS------------KEAFLRIWEN-----------------DSS--VC 51 (93)
T ss_dssp GSTTCCHH--HHHHHHHTTCCSHHHHHHH---HH------------HHHHHHHHTT-----------------CTT--CC
T ss_pred cCCCCCHH--HHHHHHHcCCCCHHHHHhC---CH------------HHHHHHHHHH-----------------CCC--CC
Confidence 34445553 4488999999999999877 32 3334333322 112 22
Q ss_pred EccccceeeeeeCCeeecCCCCChhhHHHHHHH
Q 012373 344 FNNIYELNGLISGEQYFPADALPESQKVYVDSQ 376 (465)
Q Consensus 344 FN~i~~lvGa~~~g~y~s~d~L~~~qk~~V~~L 376 (465)
+|.+|.|.||+-| ++...|++..|....+.
T Consensus 52 ~~~L~aL~gAi~G---~~w~~l~~~~K~~L~~~ 81 (93)
T 3bqs_A 52 MSELYALEGAVQG---IRWHGLDEAKKIELKKF 81 (93)
T ss_dssp HHHHHHHHHHHHT---SCGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC---CCHHHCCHHHHHHHHHH
Confidence 3778889999977 66778898888776543
No 11
>4dez_A POL IV 1, DNA polymerase IV 1; Y-family, transferase; HET: DNA; 2.60A {Mycobacterium smegmatis}
Probab=54.64 E-value=2.6 Score=41.64 Aligned_cols=38 Identities=32% Similarity=0.480 Sum_probs=29.9
Q ss_pred eeeeeccCchhhhhhhhcCCccHHHHHHHhhcChHHHHHHHcC
Q 012373 264 RLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGS 306 (465)
Q Consensus 264 RLekIgKdG~~hkrL~~~~I~tV~dFLrl~~~d~~kLR~iLg~ 306 (465)
.|-+||+. .-++|...||+|++|+.+ .++..|++.||.
T Consensus 182 ~l~GiG~~--~~~~L~~~GI~Ti~dL~~---~~~~~L~~~fG~ 219 (356)
T 4dez_A 182 ALWGVGPK--TTKKLAAMGITTVADLAV---TDPSVLTTAFGP 219 (356)
T ss_dssp GSTTCCHH--HHHHHHHTTCCSHHHHHT---SCHHHHHHHHCH
T ss_pred HHcCCchh--HHHHHHHcCCCeeccccc---CCHHHHHHHhCC
Confidence 33466664 348899999999999864 489999999974
No 12
>3pzp_A DNA polymerase kappa; DNA nucleotidyltransferase, DNA binding nucleotide binding M binding, nucleus; HET: DNA TTD DTP; 3.34A {Homo sapiens}
Probab=47.82 E-value=8.4 Score=40.55 Aligned_cols=51 Identities=20% Similarity=0.364 Sum_probs=37.7
Q ss_pred ceeeeeeccCchhhhhhhhcCCccHHHHHHHhhcChHHHHHHHcCCCChhhHHHHHHHhcc
Q 012373 262 VWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAKT 322 (465)
Q Consensus 262 VwRLekIgKdG~~hkrL~~~~I~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAkt 322 (465)
|-+|-+||+.+ -++|...||.|++|+..+ +..|+..|| ...|..+.++|.-
T Consensus 340 V~kl~GIG~~t--~~~L~~lGI~TigDL~~~----~~~L~~~fG----~~~~~~l~~~a~G 390 (517)
T 3pzp_A 340 IRKVSGIGKVT--EKMLKALGIITCTELYQQ----RALLSLLFS----ETSWHYFLHISLG 390 (517)
T ss_dssp GGGSTTCCHHH--HHHHHHTTCCBHHHHHHH----HHHHHHHSC----HHHHHHHHHHHTT
T ss_pred hhhhccccHHH--HHHHHHhCCCcHHHHHhh----HHHHHHHhC----hHHHHHHHHHHcC
Confidence 44455777654 489999999999999986 457888774 3568877777763
No 13
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=47.43 E-value=10 Score=36.95 Aligned_cols=55 Identities=9% Similarity=0.201 Sum_probs=43.4
Q ss_pred cceeeeeeccCchhhhhhhhcCCccHHHHHHHhhcChHHHHHHHcCCCChhhHHHHHHHhcc
Q 012373 261 DVWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAKT 322 (465)
Q Consensus 261 eVwRLekIgKdG~~hkrL~~~~I~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAkt 322 (465)
+..-|.+|+.+-+ ++|.++||.|++||..+ +++++.++| +++++.-+.+.+-|..
T Consensus 158 pL~Qlp~i~~~~~--~~l~~~~i~s~~~l~~~---~~~e~~~ll--~~~~~~~~~v~~~~~~ 212 (328)
T 3im1_A 158 PLRQIPHFNNKIL--EKCKEINVETVYDIMAL---EDEERDEIL--TLTDSQLAQVAAFVNN 212 (328)
T ss_dssp GGGGSTTCCHHHH--HHHHHTTCCSHHHHHHS---CHHHHHHHC--CCCHHHHHHHHHHHHH
T ss_pred ceeCCCCCCHHHH--HHHHhCCCCCHHHHhcC---CHHHHHhHh--CCCHHHHHHHHHHHHh
Confidence 4567778877544 67899999999999765 899999998 6888888887776653
No 14
>3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex, Y-family DNA polym translesion synthesis, nucleoside triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens} PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A* 3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 4ebc_A* 4ebd_A* ...
Probab=46.16 E-value=4.2 Score=41.57 Aligned_cols=47 Identities=28% Similarity=0.307 Sum_probs=35.7
Q ss_pred eeccCchhhhhhhhcCCccHHHHHHHhhcChHHHHHHHcCCCChhhHHHHHHHhcc
Q 012373 267 KIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAKT 322 (465)
Q Consensus 267 kIgKdG~~hkrL~~~~I~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAkt 322 (465)
+||+ ..-++|...||+|++|+.++ ++..|++.||. +....+.+||.-
T Consensus 241 GIG~--~t~~~L~~lGI~TigdLa~~---~~~~L~~~fG~----~~g~~L~~~a~G 287 (420)
T 3osn_A 241 GIGY--KTAKCLEALGINSVRDLQTF---SPKILEKELGI----SVAQRIQKLSFG 287 (420)
T ss_dssp TCCH--HHHHHHHHTTCCSHHHHHHS---CHHHHHHHHHH----HHHHHHHHHHTT
T ss_pred CCCH--HHHHHHHHhCCCcHHHHhhC---CHHHHHHHhCc----hHHHHHHHHhcC
Confidence 4554 45699999999999998765 88999999974 345666677753
No 15
>2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A* 3osp_A*
Probab=43.45 E-value=8.1 Score=39.42 Aligned_cols=52 Identities=19% Similarity=0.197 Sum_probs=37.5
Q ss_pred ceeeeeeccCchhhhhhhh--cCCccHHHHHHHhhcChHHHHHHHcCCCChhhHHHHHHHhc
Q 012373 262 VWRLEKIGKDGSFHKRLNN--AGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAK 321 (465)
Q Consensus 262 VwRLekIgKdG~~hkrL~~--~~I~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAk 321 (465)
|-.|-+||+ ..-++|.. .||+|++|+.++. ++..|++.||.. ....+..||+
T Consensus 243 v~~l~GiG~--~~~~~L~~~~~GI~ti~dL~~~~--~~~~L~~~fG~~----~g~~l~~~a~ 296 (434)
T 2aq4_A 243 LDDLPGVGH--STLSRLESTFDSPHSLNDLRKRY--TLDALKASVGSK----LGMKIHLALQ 296 (434)
T ss_dssp GGGSTTCCH--HHHHHHHHHTTCCCSHHHHHHHC--CHHHHHHHHCSS----HHHHHHHHTT
T ss_pred cccccCcCH--HHHHHHHHhcCCceEHHHHHhcC--CHHHHHHHhCHH----HHHHHHHHhc
Confidence 333445554 45689999 8999999999875 889999999752 3445556665
No 16
>1t94_A Polymerase (DNA directed) kappa; replication, DNA repair, Y-family DNA polymerase, translesion DNA synthesis, lesion bypass; 2.40A {Homo sapiens} SCOP: d.240.1.1 e.8.1.7 PDB: 2oh2_A* 2w7o_A* 2w7p_A* 3hed_A* 3in5_A*
Probab=41.76 E-value=13 Score=38.20 Aligned_cols=50 Identities=20% Similarity=0.371 Sum_probs=37.2
Q ss_pred ceeeeeeccCchhhhhhhhcCCccHHHHHHHhhcChHHHHHHHcCCCChhhHHHHHHHhc
Q 012373 262 VWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAK 321 (465)
Q Consensus 262 VwRLekIgKdG~~hkrL~~~~I~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAk 321 (465)
|-+|-+||+. ..++|...||+|++|+.++ +..|++.|| .+.|..+.++|+
T Consensus 284 v~~l~GiG~~--~~~~L~~lGI~T~gdL~~~----~~~L~~~fG----~~~~~~l~~~a~ 333 (459)
T 1t94_A 284 IRKVSGIGKV--TEKMLKALGIITCTELYQQ----RALLSLLFS----ETSWHYFLHISL 333 (459)
T ss_dssp GGGCTTSCHH--HHHHHHHTTCCBHHHHHHT----HHHHHHHSC----HHHHHHHHHHHT
T ss_pred HHhcCCcCHH--HHHHHHHcCCCcHHHHHhh----HHHHHHHhC----hHhHHHHHHHHc
Confidence 5556667764 4489999999999998874 357999885 345666777776
No 17
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=38.40 E-value=24 Score=34.61 Aligned_cols=55 Identities=15% Similarity=0.242 Sum_probs=42.8
Q ss_pred cceeeeeeccCchhhhhhhhcCCccHHHHHHHhhcChHHHHHHHcCCCChhhHHHHHHHhcc
Q 012373 261 DVWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAKT 322 (465)
Q Consensus 261 eVwRLekIgKdG~~hkrL~~~~I~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAkt 322 (465)
+..-|.+|+.+ .-++|.++||.|++||.. .+++++..+| |+++..-+.+.+-+..
T Consensus 162 pL~Qlp~i~~~--~~~~l~~~~i~s~~~l~~---~~~~e~~~ll--~l~~~~~~~i~~~~~~ 216 (339)
T 2q0z_X 162 YLKQLPHFTSE--HIKRCTDKGVESVFDIME---MEDEERNALL--QLTDSQIADVARFCNR 216 (339)
T ss_dssp GGGGSTTCCHH--HHHHHHHTTCCSHHHHHH---SCHHHHHHHH--CCCHHHHHHHHHHHTT
T ss_pred ceecCCCCCHH--HHHHHHhcCCCCHHHHHh---CCHHHHHHHH--CCCHHHHHHHHHHHHh
Confidence 46677888765 347899999999999875 6899999999 4888777777665543
No 18
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=35.56 E-value=20 Score=28.59 Aligned_cols=36 Identities=19% Similarity=0.336 Sum_probs=24.0
Q ss_pred hhhhhcCCccHHHHHHHhhcChHHHHHHHcCCCChhhHHHH
Q 012373 276 KRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEAL 316 (465)
Q Consensus 276 krL~~~~I~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~ 316 (465)
.-|..+||+||+|+++. .++.|.++= |+-.|.-+.+
T Consensus 22 NcLkragI~Tv~dL~~~---s~~dLlki~--n~G~kSl~EI 57 (73)
T 1z3e_B 22 NCLKRAGINTVQELANK---TEEDMMKVR--NLGRKSLEEV 57 (73)
T ss_dssp HHHHHTTCCBHHHHHTS---CHHHHHTST--TCCHHHHHHH
T ss_pred HHHHHcCCCcHHHHHcC---CHHHHHHcC--CCCHHHHHHH
Confidence 45788999999998875 566666663 3334443333
No 19
>4f4y_A POL IV, DNA polymerase IV; Y-family polymerase, transferase-DNA complex; HET: DNA DCP; 2.34A {Sulfolobus acidocaldarius} PDB: 3bq0_A* 3bq1_A* 3bq2_A* 4hyk_A* 1k1q_A 1k1s_A
Probab=34.77 E-value=5.9 Score=39.49 Aligned_cols=46 Identities=33% Similarity=0.438 Sum_probs=34.3
Q ss_pred eeccCchhhhhhhhcCCccHHHHHHHhhcChHHHHHHHcCCCChhhHHHHHHHhc
Q 012373 267 KIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAK 321 (465)
Q Consensus 267 kIgKdG~~hkrL~~~~I~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAk 321 (465)
+||+. .-++|...||.|++|+.+ .++..|++.||. +....+..+|+
T Consensus 186 GiG~~--~~~~L~~~GI~Ti~dL~~---~~~~~L~~~fG~----~~g~~l~~~a~ 231 (362)
T 4f4y_A 186 GIGSV--LARRLNELGIQKLRDILS---KNYNELEKITGK----AKALYLLKLAQ 231 (362)
T ss_dssp TCCST--THHHHHHTTCCBGGGGTT---SCHHHHHHHHCH----HHHHHHHHHHT
T ss_pred CCCHH--HHHHHHHcCCChHHHHhc---CCHHHHHHHhCh----HHHHHHHHHhc
Confidence 55654 458999999999999765 588999999973 34555556665
No 20
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=33.81 E-value=27 Score=28.93 Aligned_cols=38 Identities=13% Similarity=0.184 Sum_probs=25.8
Q ss_pred hhhhhcCCccHHHHHHHhhcChHHHHHHHcCCCChhhHHHHHH
Q 012373 276 KRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLD 318 (465)
Q Consensus 276 krL~~~~I~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~ 318 (465)
.-|..+||+||+|++.. +++.|.+|= |+-.|.-+.+.+
T Consensus 25 NcLkragI~Tv~dL~~~---se~dLlki~--n~G~KSl~EI~~ 62 (86)
T 3k4g_A 25 NCLXAEAIHYIGDLVQR---TEVELLXTP--NLGXXSLTEIXD 62 (86)
T ss_dssp HHHHHTTCCBHHHHHHS---CHHHHHTST--TCCHHHHHHHHH
T ss_pred HHHHHcCCCcHHHHHhC---CHHHHhhcc--ccCcccHHHHHH
Confidence 56889999999998876 555566653 444555555544
No 21
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Probab=32.78 E-value=6.1 Score=38.86 Aligned_cols=54 Identities=22% Similarity=0.297 Sum_probs=39.4
Q ss_pred ceeeeeeccCchhhhhhhhcCCccHHHHHHHhhcChHHHHHHHcCCCChhhHHHHHHHhcccc
Q 012373 262 VWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAKTCV 324 (465)
Q Consensus 262 VwRLekIgKdG~~hkrL~~~~I~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAktCv 324 (465)
|..|-+||+ ...++|...||+|++|+.+ .++..|++.||. .....+.+||+--+
T Consensus 180 v~~l~GiG~--~~~~~L~~~Gi~t~~dL~~---~~~~~L~~~fG~----~~g~~l~~~a~G~d 233 (352)
T 1jx4_A 180 IADVPGIGN--ITAEKLKKLGINKLVDTLS---IEFDKLKGMIGE----AKAKYLISLARDEY 233 (352)
T ss_dssp GGGSTTCCH--HHHHHHHTTTCCBGGGGGS---SCHHHHHHHHCH----HHHHHHHHHHTTCC
T ss_pred CCcccccCH--HHHHHHHHcCCchHHHHHC---CCHHHHHHhcCh----hHHHHHHHHhCCCC
Confidence 445556665 4568999999999999875 588999999964 22566677776433
No 22
>3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA repair, DNA synthesis, binding, magnesium, metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens}
Probab=32.27 E-value=7.3 Score=41.10 Aligned_cols=51 Identities=24% Similarity=0.312 Sum_probs=35.2
Q ss_pred ceeeeeeccCchhhhhhhhcCCccHHHHHHHhhcChHHHHHHHcCCCChhhHHHHHHHhc
Q 012373 262 VWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAK 321 (465)
Q Consensus 262 VwRLekIgKdG~~hkrL~~~~I~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAk 321 (465)
|-.|-+||+ ..-++|...||+|++|+.+ .++..|++.||..+ ...+..+|.
T Consensus 317 V~~l~GIG~--~t~~kL~~lGI~TigDLa~---~~~~~L~~~fG~~~----g~~L~~~a~ 367 (504)
T 3gqc_A 317 VTNLPGVGH--SMESKLASLGIKTCGDLQY---MTMAKLQKEFGPKT----GQMLYRFCR 367 (504)
T ss_dssp GGGSTTCCH--HHHHHHHHTTCCBHHHHTT---SCHHHHHHHHCHHH----HHHHHHHTT
T ss_pred hhHhhCcCH--HHHHHHHHcCCCcHHHHHh---ccHHHHHHhhChhH----HHHHHHHhc
Confidence 333445555 4558999999999999875 58899999997522 333445555
No 23
>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A
Probab=29.71 E-value=6.1 Score=38.92 Aligned_cols=54 Identities=28% Similarity=0.368 Sum_probs=39.1
Q ss_pred ceeeeeeccCchhhhhhhhcCCccHHHHHHHhhcChHHHHHHHcCCCChhhHHHHHHHhcccc
Q 012373 262 VWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAKTCV 324 (465)
Q Consensus 262 VwRLekIgKdG~~hkrL~~~~I~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAktCv 324 (465)
|..|-+||+ ...++|...||+|++|+.+ .++..|++.||. .....+.+||+--+
T Consensus 181 v~~l~GiG~--~~~~~L~~~Gi~t~~dL~~---~~~~~L~~~fG~----~~g~~l~~~a~G~d 234 (354)
T 3bq0_A 181 IDEIPGIGS--VLARRLNELGIQKLRDILS---KNYNELEKITGK----AKALYLLKLAQNKY 234 (354)
T ss_dssp STTSTTCCH--HHHHHHTTTTCCBGGGGGG---SCHHHHHHHHCH----HHHHHHHHHHTTCC
T ss_pred cccccCcCH--HHHHHHHHcCCccHHHHhc---CCHHHHHHHHCH----HHHHHHHHHhCCCC
Confidence 333445554 4568999999999999875 588999999964 22666777777433
No 24
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=27.69 E-value=28 Score=27.42 Aligned_cols=50 Identities=26% Similarity=0.354 Sum_probs=40.1
Q ss_pred CchhhhhhhhcCCccHHHHHHHhhcChHHHHHHHcCCCChhhHHHHHHHhccccc
Q 012373 271 DGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAKTCVL 325 (465)
Q Consensus 271 dG~~hkrL~~~~I~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAktCvl 325 (465)
+-..-++|..+|++||++. .+.+++.|-.|- |+|...=+.+.+-|+..+.
T Consensus 15 ~e~~a~~L~~~Gf~tve~v---A~~~~~eL~~I~--G~dE~~a~~l~~~A~~~l~ 64 (70)
T 1u9l_A 15 DEDFATVLVEEGFSTLEEL---AYVPMKELLEIE--GLDEPTVEALRERAKNALA 64 (70)
T ss_dssp CHHHHHHHHHTTCCCHHHH---HHSCHHHHTTST--TCCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCcCcHHHH---HcCCHHHHhhcc--CCCHHHHHHHHHHHHHHHH
Confidence 4456689999999999965 455777777775 8899999999999987654
No 25
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=23.66 E-value=34 Score=36.18 Aligned_cols=48 Identities=27% Similarity=0.541 Sum_probs=37.4
Q ss_pred eeeeeccCchhhhhhhhcCCccHHHHHHHhhcChHHHHHHHcCCCChhhHHHHHHHhc
Q 012373 264 RLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAK 321 (465)
Q Consensus 264 RLekIgKdG~~hkrL~~~~I~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~v~HAk 321 (465)
+|.+|+.. ..++|.++||.|++|+. .|+.+|.+++| .+.-+.+++-|+
T Consensus 661 qlp~i~~~--rar~L~~~g~~s~~~l~----~~~~~l~~~l~----~~~~~~i~~~~~ 708 (715)
T 2va8_A 661 QISGVGRK--RARLLYNNGIKELGDVV----MNPDKVKNLLG----QKLGEKVVQEAA 708 (715)
T ss_dssp TSTTCCHH--HHHHHHHTTCCSHHHHH----HCHHHHHHHHC----HHHHHHHHHHHH
T ss_pred hCCCCCHH--HHHHHHHcCCCCHHHHh----CCHHHHHHHhC----hhHHHHHHHHHH
Confidence 55566553 45789999999999976 58999999995 777888877654
No 26
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=23.55 E-value=23 Score=28.91 Aligned_cols=36 Identities=19% Similarity=0.336 Sum_probs=23.2
Q ss_pred hhhhhcCCccHHHHHHHhhcChHHHHHHHcCCCChhhHHHH
Q 012373 276 KRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEAL 316 (465)
Q Consensus 276 krL~~~~I~tV~dFLrl~~~d~~kLR~iLg~gmS~k~We~~ 316 (465)
.-|..+||+||+|+++. +++.|.++= |+-.|.-+.+
T Consensus 29 NcLk~agI~Tv~dL~~~---se~dLlki~--n~G~kSl~EI 64 (79)
T 3gfk_B 29 NCLKRAGINTVQELANK---TEEDMMKVR--NLGRKSLEEV 64 (79)
T ss_dssp HHHHHTTCCBHHHHTTC---CHHHHTTST--TCHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHhC---CHHHHHHcC--CCCHhHHHHH
Confidence 66889999999998765 555555552 3334444443
No 27
>1tqz_A Necap1; endocytosis, structural genomics, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: b.55.1.11
Probab=22.19 E-value=29 Score=31.01 Aligned_cols=34 Identities=24% Similarity=0.307 Sum_probs=27.4
Q ss_pred CCCCcccCCceeccCCCceEEEEEeCCCCceecc
Q 012373 106 LSLPLFTGGKVEGEQGAAIHVVLVDANTGHVVTS 139 (465)
Q Consensus 106 L~~pifTg~kI~ae~g~~I~V~LvD~~t~~iVt~ 139 (465)
+..|+|||.--.-+.|....|.|.|.+||+.-..
T Consensus 38 ~~~~~wtGrlrv~~~g~~~~I~LeD~~tGeLFA~ 71 (133)
T 1tqz_A 38 LDQPDWTGRLRITSKGKIAYIKLEDKVSGELFAQ 71 (133)
T ss_dssp CSSSCEEEEEEEECCSSSEEEEEECSSCCSSCEE
T ss_pred CCCceeEEEEEEEEeCCEEEEEEEeCCCCcEEEe
Confidence 5678999986666788889999999998875443
No 28
>3euh_C MUKE, chromosome partition protein MUKF; chromosome condensation, condensin, non-SMC subunit, kleisin, calcium, cell cycle, cell division; 2.90A {Escherichia coli} PDB: 3rpu_G
Probab=21.05 E-value=1e+02 Score=29.88 Aligned_cols=74 Identities=18% Similarity=0.284 Sum_probs=50.2
Q ss_pred hhhhhcCCccHHHHHHHhh--cChHHHHHHHc--CCCChhhHHHHHHHhccccc--CCceEEEeeCCCCcEEEEEccccc
Q 012373 276 KRLNNAGIFSVEDFLRLVV--RDPQKLRSILG--SGMSNKMWEALLDHAKTCVL--SGKLYVYYPEDSRNVGVVFNNIYE 349 (465)
Q Consensus 276 krL~~~~I~tV~dFLrl~~--~d~~kLR~iLg--~gmS~k~We~~v~HAktCvl--~~k~y~y~~~~~~~v~l~FN~i~~ 349 (465)
++|++.||.|+++...-+. .|+++|.++++ .+=|+..-+++-+-.++|-- ..--.++...+..+..-+=.+||-
T Consensus 107 erLa~~gift~qeL~eeL~sl~dE~kLlkl~~~R~~GSDlD~~kl~ekv~~sLrrL~RlgmI~~~~~d~~kf~iteavfR 186 (234)
T 3euh_C 107 ERLANEGIFTQQELYDELLTLADEAKLLKLVNNRSTGSDVDRQKLQEKVRSSLNRLRRLGMVWFMGHDSSKFRITESVFR 186 (234)
T ss_dssp GGGGGTTEEEHHHHHHHHHHHSCHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHTTSEEECSSSSSEEEECGGGGG
T ss_pred HHHhcCCcccHHHHHHHHHHhhCHHHHHHHHhccCCCchhhHHHHHHHHHHHHHHHHhcCcEEEecCCCCeEEecHHHHh
Confidence 7899999999999887663 58999999995 22378888889998888853 333345543322344344444443
Done!