Query 012374
Match_columns 465
No_of_seqs 287 out of 1704
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 08:12:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012374.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012374hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xov_A Rhomboid protease GLPG; 100.0 1.4E-28 4.9E-33 229.3 14.2 177 223-408 3-180 (181)
2 2nr9_A Protein GLPG homolog; i 100.0 4E-29 1.4E-33 236.0 6.7 177 223-409 8-186 (196)
3 2lv7_A Calcium-binding protein 24.9 91 0.0031 24.7 4.8 60 101-163 28-87 (100)
4 3u0k_A Rcamp; fluorescent prot 15.6 1.4E+02 0.0049 30.9 4.8 66 89-156 282-347 (440)
5 1j7q_A CAVP, calcium vector pr 13.7 2.1E+02 0.0073 20.8 4.4 46 101-148 6-51 (86)
6 2ktg_A Calmodulin, putative; e 13.6 1.8E+02 0.0063 21.0 3.9 53 101-155 6-58 (85)
7 2opo_A Polcalcin CHE A 3; calc 12.4 1.9E+02 0.0066 21.0 3.7 51 102-155 4-54 (86)
8 3cs1_A Flagellar calcium-bindi 12.1 1.4E+02 0.0048 26.5 3.3 21 101-121 40-60 (219)
9 1avs_A Troponin C; muscle cont 11.4 2.2E+02 0.0076 21.0 3.8 52 102-155 13-64 (90)
10 2dmn_A Homeobox protein TGIF2L 9.7 2.1E+02 0.0071 22.1 3.1 22 101-122 12-33 (83)
No 1
>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*
Probab=99.96 E-value=1.4e-28 Score=229.35 Aligned_cols=177 Identities=16% Similarity=0.139 Sum_probs=131.3
Q ss_pred chHHH-HHHHHHHHHHHHHHhcCCCCccccchhhhhhhhchhhhhhhcCceeeeeecccccCCHHHHHHHHHHHHHHHHH
Q 012374 223 NLYLI-ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQ 301 (465)
Q Consensus 223 ~p~vt-~Li~inv~VFil~~~~~~~~~~~~l~~~~l~~ga~~~~~i~~gq~WRL~Ts~FlH~gl~HLl~Nml~L~~fG~~ 301 (465)
.|++| .++++|+++|+++...+... ...+.+..+..+.++||||++|++|+|.|+.|+++||+.++.+|..
T Consensus 3 ~~pvt~~li~~~v~vf~~~~~~~~~~--------~~~~~~~~p~~~~~~~~wrl~T~~f~H~~~~Hl~~Nm~~l~~~g~~ 74 (181)
T 2xov_A 3 AGPVTWVMMIACVVVFIAMQILGDQE--------VMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGA 74 (181)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCHHH--------HHHHHSSCCSGGGTTCTTHHHHGGGCCCSHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHhCcHH--------HHHhhcCChhhccCCCCHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 35688 99999999999987643210 1122233333457899999999999999999999999999999999
Q ss_pred HHHhhchhHHHHHHHHHhhhhhhhhcccCCCCccCchHHHHHHHHHHHHHHhcchhhhhhhhHHHHHHHHHHHHHHHHHH
Q 012374 302 VCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFII 381 (465)
Q Consensus 302 LE~~~Gs~rfl~lYllsGi~G~l~s~l~~p~~~VGaSGaVfGLlga~~~~~~~~~~~l~~~~~~~l~~~~ii~~~l~~ll 381 (465)
+|+.+|+.|++.+|+++|++|+++++++.+...+||||++||++++..+.....++... .++..+.....+.+.+.+..
T Consensus 75 ~E~~~G~~~fl~~yl~~~i~~~l~~~~~~~~~~vGaSGai~gl~g~~~~~~~~~p~~~~-~l~~~~~~~~~~~~~~~~~~ 153 (181)
T 2xov_A 75 VEKRLGSGKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMGYVWLRGERDPQSGI-YLQRGLIIFALIWIVAGWFD 153 (181)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHCSCCCCSHHHHHHHHHHHHHHHHHCGGGSC-CCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHHHHhhCcCcee-eeHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998887767999999999999987754322222110 11222222222222222222
Q ss_pred hcCCchhHHHHHHHHHHHHHHHHHhhc
Q 012374 382 SNFGPVDTWAHLGAAFTGIIYGFLTCP 408 (465)
Q Consensus 382 ~~~~~is~~aHLgG~L~G~llg~l~~~ 408 (465)
...+++|++||++|+++|+++++++.+
T Consensus 154 ~~~~~v~~~aHlgG~l~G~l~~~~~~~ 180 (181)
T 2xov_A 154 LFGMSMANGAHIAGLAVGLAMAFVDSL 180 (181)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hccccchHHHHHHHHHHHHHHHHHHhc
Confidence 223589999999999999999998754
No 2
>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A
Probab=99.95 E-value=4e-29 Score=235.98 Aligned_cols=177 Identities=19% Similarity=0.314 Sum_probs=131.3
Q ss_pred chHHH-HHHHHHHHHHHHHHhcCCCCccccchhhhhhhhchhhhhhhcCceeeeeecccccCCHHHHHHHHHHHHHHHHH
Q 012374 223 NLYLI-ILVSIDVAVFLFEIASPIRNSEFGFFSLPLLYGAKINELILVGEWWRLVTPMFLHSGLFHVALSCWALLTFGPQ 301 (465)
Q Consensus 223 ~p~vt-~Li~inv~VFil~~~~~~~~~~~~l~~~~l~~ga~~~~~i~~gq~WRL~Ts~FlH~gl~HLl~Nml~L~~fG~~ 301 (465)
.+++| .++++|+++|+++...+... ...+.+..+..+..+||||++|++|+|.|+.|+++||+.++.+|..
T Consensus 8 ~~pvt~~li~~~v~vfll~~~~~~~~--------~~~~~~~~p~~~~~~~~wrl~T~~flH~~~~Hl~~Nm~~l~~~G~~ 79 (196)
T 2nr9_A 8 QGKITLILTALCVLIYIAQQLGFEDD--------IMYLMHYPAYEEQDSEVWRYISHTLVHLSNLHILFNLSWFFIFGGM 79 (196)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTCHHH--------HHHHHSCCCSGGGGGCTTHHHHGGGCCSSHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHcCcHH--------HHHhhcCCHhhcccCCcHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 35678 99999999999987643210 1122233343457899999999999999999999999999999999
Q ss_pred HHHhhchhHHHHHHHHHhhhhhhhhcccCCCCccCchHHHHHHHHHHHHHHhcchhhhhhhhHHHHHHHHHHHHHHHHHH
Q 012374 302 VCKSYGPFTFFLIYTLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQFQNKDLIAKDVSERMFQKAILSTALSFII 381 (465)
Q Consensus 302 LE~~~Gs~rfl~lYllsGi~G~l~s~l~~p~~~VGaSGaVfGLlga~~~~~~~~~~~l~~~~~~~l~~~~ii~~~l~~ll 381 (465)
+|+.+|++|++.+|+++|++|+++++++.+...+||||++||++++.+......+.... .+..+...+.+.+.+.+..
T Consensus 80 lE~~~G~~~~l~~yl~~~~~~~l~~~~~~~~~~vGaSGai~gl~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 157 (196)
T 2nr9_A 80 IERTFGSVKLLMLYVVASAITGYVQNYVSGPAFFGLSGVVYAVLGYVFIRDKLNHHLFD--LPEGFFTMLLVGIALGFIS 157 (196)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHCSCCCCSHHHHHHHHHHHHHHHHSSTTSCC--CCCSSTTTTTTTTTHHHHS
T ss_pred HHHHHChHHHHHHHHHHHHHHHHHHHHhcCCCeeeHHHHHHHHHHHHHHHHHhcchhhc--chHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999887767999999999999987765433332211 1111111111112222221
Q ss_pred h-cCCchhHHHHHHHHHHHHHHHHHhhcc
Q 012374 382 S-NFGPVDTWAHLGAAFTGIIYGFLTCPL 409 (465)
Q Consensus 382 ~-~~~~is~~aHLgG~L~G~llg~l~~~~ 409 (465)
. ..+++|++||++|+++|+++++++.++
T Consensus 158 ~~~~~~v~~~aHlgG~l~G~l~~~~~~~~ 186 (196)
T 2nr9_A 158 PLFGVEMGNAAHISGLIVGLIWGFIDSKL 186 (196)
T ss_dssp CSSCCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCCccHHHHHHHHHHHHHHHHHHHhc
Confidence 1 234799999999999999999988654
No 3
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=24.92 E-value=91 Score=24.72 Aligned_cols=60 Identities=15% Similarity=0.134 Sum_probs=39.0
Q ss_pred CCCcHHHHHHHHHHHHHhhcCcCCCCCcCcchhhhcccccccCccchhhhhHHHHhcccCccc
Q 012374 101 SSDSECQIRILESYLAKLKDDSIQNSSESSGEIEELHSRSGEINAKTELDSLDAYLGKLNTDA 163 (465)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 163 (465)
...++++++++..-|..|- .+....-+-+++......-+..-+.++++.+.+.+| .|.++
T Consensus 28 ~~l~~~~~~el~~~F~~~D--~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~~~D-~d~dG 87 (100)
T 2lv7_A 28 VDIPEDELEEIREAFKVFD--RDGNGFISKQELGTAMRSLGYMPNEVELEVIIQRLD-MDGDG 87 (100)
T ss_dssp CCCCGGGHHHHHHHHHHTC--SSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHHHHC-SSCSS
T ss_pred ccCCHHHHHHHHHHHHHHc--CCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHC-CCCCC
Confidence 4567899999999999994 344455555665555555555556677777766633 24444
No 4
>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}
Probab=15.57 E-value=1.4e+02 Score=30.86 Aligned_cols=66 Identities=14% Similarity=0.147 Sum_probs=45.3
Q ss_pred ccccceeeeccCCCCcHHHHHHHHHHHHHhhcCcCCCCCcCcchhhhcccccccCccchhhhhHHHHh
Q 012374 89 KEKLRMVRCAAKSSDSECQIRILESYLAKLKDDSIQNSSESSGEIEELHSRSGEINAKTELDSLDAYL 156 (465)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 156 (465)
..+=.+.|..|....+++|++++.+-|..+-.|- ...-+-+++.+....-+..-++++++.+...+
T Consensus 282 MKKKTl~wePs~E~Lt~EEI~ELREaF~~fDkDg--dG~IS~eELk~aLrsLG~~~TeeEI~~Lf~~~ 347 (440)
T 3u0k_A 282 MQKKTKGWEPTRDQLTEEQIAEFKEAFSLFDKDG--DGTITTKELGTVMRSLGQNPTEAELQDMINEV 347 (440)
T ss_dssp TTTCEEEECCBCBCCCHHHHHHHHHHHHHHCTTC--SSEECHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred cchhhhhhHhhHhhhhHHHHHHHHHHHHHHcCCC--CCEECHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 3445678999999999999999999999995543 33344445444444444445566777776654
No 5
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=13.70 E-value=2.1e+02 Score=20.80 Aligned_cols=46 Identities=7% Similarity=0.069 Sum_probs=26.4
Q ss_pred CCCcHHHHHHHHHHHHHhhcCcCCCCCcCcchhhhcccccccCccchh
Q 012374 101 SSDSECQIRILESYLAKLKDDSIQNSSESSGEIEELHSRSGEINAKTE 148 (465)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 148 (465)
...++++++++...|..+-.| ....-+.+.+......-+...+.++
T Consensus 6 ~~l~~~~~~~l~~~F~~~D~d--~~G~I~~~el~~~l~~~g~~~~~~~ 51 (86)
T 1j7q_A 6 RALGPEEKDECMKIFDIFDRN--AENIAPVSDTMDMLTKLGQTYTKRE 51 (86)
T ss_dssp CCCSSTHHHHHHHHHHHHSTT--TTSCBCHHHHHHHHHHTSCCCSHHH
T ss_pred ccCCHHHHHHHHHHHHHhCCC--CCCcCcHHHHHHHHHHHcCCCCHHH
Confidence 446778899999999999543 3333344444444443343333444
No 6
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=13.64 E-value=1.8e+02 Score=21.02 Aligned_cols=53 Identities=8% Similarity=0.083 Sum_probs=31.4
Q ss_pred CCCcHHHHHHHHHHHHHhhcCcCCCCCcCcchhhhcccccccCccchhhhhHHHH
Q 012374 101 SSDSECQIRILESYLAKLKDDSIQNSSESSGEIEELHSRSGEINAKTELDSLDAY 155 (465)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 155 (465)
...++++.+.+...|..+-.| ....-+-+.+.......+..-..++++.+...
T Consensus 6 ~~l~~~~~~~l~~~F~~~D~d--~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~ 58 (85)
T 2ktg_A 6 KVLTAEEQQEYKEAFQLFDKD--NDNKLTAEELGTVMRALGANPTKQKISEIVKD 58 (85)
T ss_dssp CSSSHHHHHHHHHHHHHTCTT--CCSEEEHHHHHHHHHTTSSCCCHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHHCCC--CCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 356788999999999998443 33333444444444444444445555555554
No 7
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=12.44 E-value=1.9e+02 Score=21.01 Aligned_cols=51 Identities=18% Similarity=0.180 Sum_probs=28.9
Q ss_pred CCcHHHHHHHHHHHHHhhcCcCCCCCcCcchhhhcccccccCccchhhhhHHHH
Q 012374 102 SDSECQIRILESYLAKLKDDSIQNSSESSGEIEELHSRSGEINAKTELDSLDAY 155 (465)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 155 (465)
..++++.+.+...|..+-.| ....-+-+.+......-+ ....++++.+...
T Consensus 4 ~~~~~~~~~l~~~F~~~D~d--~~G~i~~~el~~~l~~~g-~~~~~~~~~~~~~ 54 (86)
T 2opo_A 4 EDTPQDIADRERIFKRFDTN--GDGKISSSELGDALKTLG-SVTPDEVRRMMAE 54 (86)
T ss_dssp --CHHHHHHHHHHHHHHCTT--CSSEEEHHHHHHHHHTTT-TCCHHHHHHHHHH
T ss_pred cCCHhhHHHHHHHHHHHCCC--CCCCcCHHHHHHHHHHcC-CCCHHHHHHHHHH
Confidence 45778899999999999443 333334444444444444 3344555555554
No 8
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated, SEN membrane targeting, EF-hand, cell projection, cilium; 2.00A {Trypanosoma cruzi}
Probab=12.12 E-value=1.4e+02 Score=26.45 Aligned_cols=21 Identities=5% Similarity=0.020 Sum_probs=17.0
Q ss_pred CCCcHHHHHHHHHHHHHhhcC
Q 012374 101 SSDSECQIRILESYLAKLKDD 121 (465)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~ 121 (465)
...++++++.+...|.++-.|
T Consensus 40 ~~ls~~~~~~l~~~F~~~D~d 60 (219)
T 3cs1_A 40 REKTAEAKQRRIELFKKFDKN 60 (219)
T ss_dssp CSSSHHHHHHHHHHHHHHCTT
T ss_pred ccCCHHHHHHHHHHHHHhCCC
Confidence 456788999999999998554
No 9
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A
Probab=11.40 E-value=2.2e+02 Score=20.98 Aligned_cols=52 Identities=21% Similarity=0.164 Sum_probs=31.1
Q ss_pred CCcHHHHHHHHHHHHHhhcCcCCCCCcCcchhhhcccccccCccchhhhhHHHH
Q 012374 102 SDSECQIRILESYLAKLKDDSIQNSSESSGEIEELHSRSGEINAKTELDSLDAY 155 (465)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 155 (465)
..++++++.+...|..+-.| ....-+-+.+.......+.....++++.+...
T Consensus 13 ~l~~~~~~~l~~~F~~~D~d--~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~~ 64 (90)
T 1avs_A 13 FLSEEMIAEFKAAFDMFDAD--GGGDISTKELGTVMRMLGQNPTKEELDAIIEE 64 (90)
T ss_dssp HBCHHHHHHHHHHHHHHCTT--CSSEECHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHCCC--CCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 36788899999999999433 33334444444444444444445556665555
No 10
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=9.66 E-value=2.1e+02 Score=22.06 Aligned_cols=22 Identities=14% Similarity=0.235 Sum_probs=17.5
Q ss_pred CCCcHHHHHHHHHHHHHhhcCc
Q 012374 101 SSDSECQIRILESYLAKLKDDS 122 (465)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~ 122 (465)
...+.+|++.|+.||.+...+|
T Consensus 12 ~~~s~~q~~~L~~~f~~~~~~p 33 (83)
T 2dmn_A 12 GNLPAESVKILRDWMYKHRFKA 33 (83)
T ss_dssp SSCCHHHHHHHHHHHHHTTTTC
T ss_pred CcCCHHHHHHHHHHHHHhccCC
Confidence 3468899999999998765544
Done!