Query 012375
Match_columns 465
No_of_seqs 254 out of 1860
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 01:59:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012375.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012375hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00452 actin; Provisional 100.0 2.2E-72 4.9E-77 577.3 28.9 319 125-460 5-367 (375)
2 PTZ00466 actin-like protein; P 100.0 6.1E-72 1.3E-76 574.8 29.6 327 112-460 4-372 (380)
3 KOG0676 Actin and related prot 100.0 2E-71 4.3E-76 556.4 20.6 316 126-460 8-364 (372)
4 PTZ00281 actin; Provisional 100.0 1.9E-70 4.2E-75 563.8 27.8 322 120-460 3-368 (376)
5 PTZ00004 actin-2; Provisional 100.0 7.1E-68 1.5E-72 545.4 27.9 318 126-460 7-370 (378)
6 KOG0679 Actin-related protein 100.0 1.5E-67 3.2E-72 515.0 24.5 324 117-460 5-417 (426)
7 PTZ00280 Actin-related protein 100.0 5.7E-65 1.2E-69 529.8 29.1 320 126-460 5-402 (414)
8 KOG0677 Actin-related protein 100.0 3.6E-65 7.9E-70 475.1 21.2 319 126-459 5-379 (389)
9 PF00022 Actin: Actin; InterP 100.0 6.1E-64 1.3E-68 518.7 26.2 319 125-460 4-385 (393)
10 smart00268 ACTIN Actin. ACTIN 100.0 1.8E-61 4E-66 497.2 25.9 318 126-460 2-365 (373)
11 cd00012 ACTIN Actin; An ubiqui 100.0 1.4E-59 3.1E-64 482.9 27.5 320 127-461 1-366 (371)
12 COG5277 Actin and related prot 100.0 2.2E-56 4.9E-61 462.6 25.7 318 126-460 7-436 (444)
13 KOG0680 Actin-related protein 100.0 1.1E-54 2.4E-59 415.5 20.2 318 125-459 3-390 (400)
14 KOG0681 Actin-related protein 100.0 1.5E-45 3.3E-50 372.6 24.4 319 125-459 23-631 (645)
15 KOG0678 Actin-related protein 100.0 2.8E-45 6.2E-50 351.4 11.1 319 126-459 5-401 (415)
16 KOG0797 Actin-related protein 100.0 4.1E-32 8.9E-37 273.5 18.5 280 167-461 205-608 (618)
17 PRK13930 rod shape-determining 100.0 1.3E-28 2.8E-33 249.8 19.0 274 128-440 11-327 (335)
18 PRK13927 rod shape-determining 100.0 2.6E-27 5.6E-32 240.2 18.1 273 127-440 7-323 (334)
19 PRK13929 rod-share determining 99.9 1.9E-25 4E-30 226.8 20.6 235 165-438 74-323 (335)
20 TIGR00904 mreB cell shape dete 99.9 2.2E-25 4.8E-30 226.1 19.7 275 128-440 5-326 (333)
21 PRK13928 rod shape-determining 99.9 4.7E-23 1E-27 209.3 18.8 276 128-440 6-322 (336)
22 PF06723 MreB_Mbl: MreB/Mbl pr 99.9 4.5E-22 9.7E-27 199.4 16.1 277 127-440 3-320 (326)
23 COG1077 MreB Actin-like ATPase 99.7 2.9E-16 6.3E-21 153.2 17.0 275 127-439 8-329 (342)
24 TIGR02529 EutJ ethanolamine ut 99.6 8.6E-14 1.9E-18 134.8 17.3 229 130-437 2-238 (239)
25 PRK15080 ethanolamine utilizat 99.5 1.2E-12 2.5E-17 129.0 21.3 234 126-439 25-267 (267)
26 CHL00094 dnaK heat shock prote 99.3 5.7E-10 1.2E-14 122.4 22.4 211 186-441 136-376 (621)
27 PRK00290 dnaK molecular chaper 99.2 8.3E-10 1.8E-14 121.3 22.0 210 186-440 134-373 (627)
28 TIGR02350 prok_dnaK chaperone 99.2 7.9E-10 1.7E-14 120.9 21.8 210 186-441 131-372 (595)
29 PTZ00400 DnaK-type molecular c 99.2 9.3E-10 2E-14 121.4 20.7 211 186-441 175-415 (663)
30 PTZ00186 heat shock 70 kDa pre 99.2 1.8E-09 3.8E-14 118.7 22.0 210 186-440 161-400 (657)
31 PRK01433 hscA chaperone protei 99.2 1.5E-09 3.3E-14 118.2 20.8 204 186-441 142-356 (595)
32 PRK13411 molecular chaperone D 99.2 1.3E-09 2.9E-14 120.1 20.5 210 186-440 134-375 (653)
33 PTZ00009 heat shock 70 kDa pro 99.2 2.7E-09 5.8E-14 117.7 21.8 211 186-440 141-380 (653)
34 PLN03184 chloroplast Hsp70; Pr 99.2 2.7E-09 6E-14 117.8 21.2 210 186-440 173-412 (673)
35 TIGR01991 HscA Fe-S protein as 99.0 9.3E-09 2E-13 112.4 19.1 212 186-441 130-360 (599)
36 TIGR01174 ftsA cell division p 99.0 1.8E-09 3.9E-14 111.3 12.2 172 210-409 159-340 (371)
37 PRK09472 ftsA cell division pr 99.0 2.9E-09 6.3E-14 111.6 13.6 189 221-440 178-387 (420)
38 PRK13410 molecular chaperone D 99.0 1.3E-08 2.8E-13 112.3 19.0 209 187-441 137-376 (668)
39 PRK05183 hscA chaperone protei 99.0 2.2E-08 4.8E-13 109.8 19.0 209 186-441 150-376 (616)
40 PF00012 HSP70: Hsp70 protein; 98.9 4.5E-08 9.7E-13 107.1 16.3 211 187-440 137-375 (602)
41 PF12937 F-box-like: F-box-lik 98.8 2.1E-09 4.6E-14 77.1 3.5 47 38-84 1-47 (47)
42 PRK11678 putative chaperone; P 98.8 6E-07 1.3E-11 94.7 20.4 93 186-285 150-260 (450)
43 COG0849 ftsA Cell division ATP 98.7 6.6E-08 1.4E-12 100.1 11.9 190 211-441 167-380 (418)
44 TIGR01175 pilM type IV pilus a 98.5 1.3E-06 2.7E-11 89.3 13.8 153 209-408 143-307 (348)
45 TIGR03739 PRTRC_D PRTRC system 98.5 5.7E-06 1.2E-10 83.7 16.3 82 221-303 137-229 (320)
46 PF00646 F-box: F-box domain; 98.5 1.5E-07 3.1E-12 67.6 3.4 46 38-83 3-48 (48)
47 COG0443 DnaK Molecular chapero 98.4 2.8E-05 6E-10 84.7 21.0 95 185-289 120-221 (579)
48 smart00256 FBOX A Receptor for 98.3 5.9E-07 1.3E-11 61.8 3.0 40 41-80 1-40 (41)
49 PRK13917 plasmid segregation p 98.3 6.5E-06 1.4E-10 84.1 11.9 69 222-291 152-233 (344)
50 PF11104 PilM_2: Type IV pilus 98.2 4.9E-06 1.1E-10 84.9 9.7 154 208-408 135-299 (340)
51 COG4820 EutJ Ethanolamine util 98.1 5.2E-06 1.1E-10 76.5 6.6 213 127-408 31-251 (277)
52 PF06406 StbA: StbA protein; 97.9 4.1E-05 8.8E-10 77.5 8.4 120 171-292 81-214 (318)
53 KOG0104 Molecular chaperones G 97.6 0.003 6.6E-08 68.5 17.3 94 187-290 160-275 (902)
54 TIGR00241 CoA_E_activ CoA-subs 97.4 0.0072 1.6E-07 58.8 16.7 43 386-438 206-248 (248)
55 TIGR03192 benz_CoA_bzdQ benzoy 97.4 0.0017 3.7E-08 64.4 12.0 50 381-440 237-287 (293)
56 TIGR03286 methan_mark_15 putat 97.3 0.0011 2.4E-08 68.3 9.4 242 122-440 141-402 (404)
57 COG4972 PilM Tfp pilus assembl 97.3 0.0015 3.3E-08 64.9 9.7 117 244-408 195-312 (354)
58 KOG0101 Molecular chaperones H 97.2 0.0079 1.7E-07 65.0 14.8 211 187-441 145-383 (620)
59 PRK10719 eutA reactivating fac 96.8 0.008 1.7E-07 63.0 10.5 155 126-295 7-207 (475)
60 TIGR02261 benz_CoA_red_D benzo 96.4 0.083 1.8E-06 51.8 14.0 50 385-439 213-262 (262)
61 COG1924 Activator of 2-hydroxy 96.4 0.17 3.6E-06 51.6 16.3 44 387-440 346-389 (396)
62 KOG2997 F-box protein FBX9 [Ge 95.9 0.0059 1.3E-07 60.4 3.0 49 36-84 105-158 (366)
63 TIGR03706 exo_poly_only exopol 95.9 0.059 1.3E-06 54.0 10.3 41 242-285 125-165 (300)
64 PF06277 EutA: Ethanolamine ut 95.8 0.036 7.9E-07 58.2 8.4 155 126-295 4-204 (473)
65 KOG0100 Molecular chaperones G 95.7 0.082 1.8E-06 54.1 10.4 81 204-288 185-273 (663)
66 PRK11031 guanosine pentaphosph 95.1 0.18 4E-06 54.2 11.4 39 242-283 132-170 (496)
67 TIGR03123 one_C_unchar_1 proba 94.5 0.33 7.1E-06 49.0 10.8 125 130-267 3-153 (318)
68 PF08841 DDR: Diol dehydratase 94.3 0.48 1E-05 46.6 10.8 79 221-307 108-191 (332)
69 PRK10854 exopolyphosphatase; P 93.2 0.61 1.3E-05 50.4 10.7 39 242-283 137-175 (513)
70 KOG0103 Molecular chaperones H 93.2 0.91 2E-05 49.6 11.7 96 185-290 137-246 (727)
71 TIGR00744 ROK_glcA_fam ROK fam 92.7 12 0.00025 37.5 21.8 45 221-267 97-148 (318)
72 PF01869 BcrAD_BadFG: BadF/Bad 92.6 0.46 9.9E-06 46.6 7.9 66 361-439 206-271 (271)
73 COG0248 GppA Exopolyphosphatas 92.4 0.58 1.3E-05 50.1 9.0 60 221-284 101-168 (492)
74 COG1548 Predicted transcriptio 92.2 0.64 1.4E-05 45.1 7.9 123 126-264 4-152 (330)
75 PLN03215 ascorbic acid mannose 92.1 0.11 2.3E-06 53.5 2.9 39 36-74 2-41 (373)
76 KOG0102 Molecular chaperones m 92.0 0.81 1.8E-05 48.7 9.2 92 188-289 163-261 (640)
77 TIGR02259 benz_CoA_red_A benzo 90.2 0.54 1.2E-05 48.6 5.7 53 382-439 380-432 (432)
78 PF14450 FtsA: Cell division p 89.1 1.7 3.6E-05 37.3 7.3 59 245-312 2-71 (120)
79 KOG0281 Beta-TrCP (transducin 88.1 0.41 8.8E-06 48.1 3.0 72 37-108 74-161 (499)
80 PF02541 Ppx-GppA: Ppx/GppA ph 87.1 1.7 3.8E-05 43.0 7.0 43 240-285 110-152 (285)
81 KOG2120 SCF ubiquitin ligase, 85.7 0.53 1.1E-05 46.9 2.3 46 36-81 96-141 (419)
82 PF01968 Hydantoinase_A: Hydan 85.0 0.95 2.1E-05 45.2 3.9 33 235-267 69-102 (290)
83 KOG3926 F-box proteins [Amino 84.5 1.3 2.9E-05 43.1 4.3 49 37-85 201-250 (332)
84 PRK13321 pantothenate kinase; 83.8 14 0.0003 36.1 11.4 18 128-145 3-20 (256)
85 PF06881 Elongin_A: RNA polyme 82.3 2.1 4.6E-05 36.1 4.4 50 37-88 3-52 (109)
86 PRK13317 pantothenate kinase; 80.3 2.1 4.5E-05 42.5 4.2 72 360-440 201-273 (277)
87 TIGR02707 butyr_kinase butyrat 80.1 75 0.0016 32.6 17.1 33 386-424 296-328 (351)
88 PRK03011 butyrate kinase; Prov 78.4 86 0.0019 32.3 21.4 46 385-436 297-342 (358)
89 COG4819 EutA Ethanolamine util 78.2 4.5 9.6E-05 40.8 5.6 140 126-281 6-181 (473)
90 COG2441 Predicted butyrate kin 77.9 7.3 0.00016 38.4 6.8 74 361-440 257-331 (374)
91 KOG0274 Cdc4 and related F-box 76.5 1.1 2.4E-05 48.6 1.1 48 37-84 107-154 (537)
92 PF13013 F-box-like_2: F-box-l 73.7 5.4 0.00012 33.8 4.3 36 37-72 21-58 (109)
93 KOG2708 Predicted metalloprote 73.6 20 0.00044 34.4 8.4 52 240-293 122-173 (336)
94 PF07318 DUF1464: Protein of u 72.5 53 0.0011 33.6 11.7 51 386-440 263-314 (343)
95 PRK13324 pantothenate kinase; 71.4 96 0.0021 30.4 13.1 17 128-144 3-19 (258)
96 PF03309 Pan_kinase: Type III 68.3 54 0.0012 30.7 10.3 18 128-145 2-19 (206)
97 PRK13318 pantothenate kinase; 66.1 58 0.0013 31.7 10.4 17 128-144 3-19 (258)
98 TIGR00671 baf pantothenate kin 63.9 54 0.0012 31.8 9.6 18 128-145 2-19 (243)
99 COG1521 Pantothenate kinase ty 60.6 53 0.0011 32.1 8.7 19 128-146 3-21 (251)
100 PF08735 DUF1786: Putative pyr 60.0 36 0.00078 33.3 7.4 44 221-265 140-190 (254)
101 TIGR01319 glmL_fam conserved h 56.1 18 0.00039 38.4 5.0 81 185-265 174-272 (463)
102 PF13941 MutL: MutL protein 55.4 23 0.00049 37.7 5.7 84 184-267 177-273 (457)
103 PRK13320 pantothenate kinase; 52.3 1.7E+02 0.0037 28.4 10.8 19 127-145 4-22 (244)
104 PRK09557 fructokinase; Reviewe 51.1 36 0.00078 33.7 6.2 67 361-438 232-298 (301)
105 PRK13310 N-acetyl-D-glucosamin 49.4 43 0.00092 33.2 6.4 68 361-439 233-300 (303)
106 PRK05082 N-acetylmannosamine k 41.5 64 0.0014 31.7 6.2 66 361-439 221-286 (291)
107 PRK13326 pantothenate kinase; 41.4 2.7E+02 0.0059 27.3 10.5 19 127-145 8-26 (262)
108 PRK09698 D-allose kinase; Prov 41.1 73 0.0016 31.5 6.6 70 361-440 224-295 (302)
109 PF09372 PRANC: PRANC domain; 40.2 24 0.00052 28.9 2.4 26 36-61 70-95 (97)
110 COG0145 HyuA N-methylhydantoin 40.0 41 0.00089 37.7 4.9 45 222-266 252-302 (674)
111 PF03702 UPF0075: Uncharacteri 39.0 21 0.00046 36.8 2.4 26 384-409 285-310 (364)
112 PF02782 FGGY_C: FGGY family o 33.6 34 0.00073 31.3 2.6 47 383-440 149-195 (198)
113 KOG0681 Actin-related protein 28.1 28 0.0006 37.5 1.1 99 48-147 67-190 (645)
114 KOG1794 N-Acetylglucosamine ki 27.5 4.1E+02 0.0089 26.7 8.9 94 165-265 46-143 (336)
115 PRK09585 anmK anhydro-N-acetyl 26.6 67 0.0015 33.2 3.6 24 385-408 288-311 (365)
116 PTZ00340 O-sialoglycoprotein e 25.3 93 0.002 31.9 4.3 50 384-440 264-319 (345)
117 KOG4341 F-box protein containi 23.1 39 0.00085 35.5 1.1 43 39-81 73-115 (483)
118 KOG4408 Putative Mg2+ and Co2+ 20.8 17 0.00037 36.8 -2.0 50 37-86 7-56 (386)
119 PF03727 Hexokinase_2: Hexokin 20.2 1.2E+02 0.0025 29.4 3.7 51 387-441 189-240 (243)
No 1
>PTZ00452 actin; Provisional
Probab=100.00 E-value=2.2e-72 Score=577.34 Aligned_cols=319 Identities=28% Similarity=0.578 Sum_probs=289.6
Q ss_pred CccEEEeCCcceEEEEEecCCCCCcccccccc-----------------cCC----------ccchH-------HHHHHH
Q 012375 125 PGSVIIDGGSGYCKFGWSKYDCPSGRTATFLE-----------------FGN----------IESPM-------YSRLRH 170 (465)
Q Consensus 125 ~~~VVID~GS~~~K~Gfage~~P~~~~~s~~~-----------------~G~----------~~~Pi-------~~~l~~ 170 (465)
.++||||+||+++|+||||++.|+.++|+.++ +|+ +.+|+ ||.++.
T Consensus 5 ~~~vViD~Gs~~~k~G~age~~P~~i~ps~vg~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~l~~Pi~~G~I~dwd~~e~ 84 (375)
T PTZ00452 5 YPAVVIDNGSGYCKIGIAGDDAPTSCFPAIVGRSKQNDGIFSTFNKEYYVGEEAQAKRGVLAIKEPIQNGIINSWDDIEI 84 (375)
T ss_pred CCEEEEECCCCeEEEeeCCCCCcCEEecceeEEECCccccccccccceEEChhhhccccCcEEcccCcCCEEcCHHHHHH
Confidence 46899999999999999999999999988652 232 24576 689999
Q ss_pred HHHHHH-hhcccCCCCCCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhh-ccCCeEEEeecchHHHHhcCCCceEEEe
Q 012375 171 FFATIY-SRMQVKPSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-LNVPAVCAINQATLALYAAKRTSGIVVN 248 (465)
Q Consensus 171 ~~~~~~-~~L~v~~~~~pVll~ep~~~~~~~~~~~~~R~~~~e~l~e~lFE-~~vpav~~~~~~vlalya~g~~tglVVD 248 (465)
+|+++| +.|+++|++|||+++||++++ +..|++ ++|+||| |++|++++.++++|++|++|++||+|||
T Consensus 85 iw~~~f~~~l~v~p~~~pvlitE~~~~~------~~~Re~----l~eilFE~~~vp~~~~~~~~~lslya~g~~tglVVD 154 (375)
T PTZ00452 85 IWHHAFYNELCMSPEDQPVFMTDAPMNS------KFNRER----MTQIMFETFNTPCLYISNEAVLSLYTSGKTIGLVVD 154 (375)
T ss_pred HHHHHHHhhcCCCcccCceeeecCCCCC------HHHHHH----HHHHHhhccCCceEEEechHHHHHHHCCCceeeeec
Confidence 999876 679999999999999999875 566654 6677777 9999999999999999999999999999
Q ss_pred ecCceeEEEEEeeCeeeccccEEEEeccHHHHHHHHHHHHHhcCCCCCc---HHHHHHHHHhccccccchHHHhhc----
Q 012375 249 IGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFGS---LYTVRTLKEKLCYVAADYKAELSK---- 321 (465)
Q Consensus 249 iG~~~T~v~PV~dG~vl~~~~~~~~~iGG~~lt~~L~~lL~~~~~~~~~---~~~v~~iKe~~c~v~~d~~~e~~~---- 321 (465)
+|++.|+|+||+||+++.+ +++++++||+++|++|+++|+.+++.+.+ .+++++|||++||++.|+++++..
T Consensus 155 iG~~~t~v~PV~dG~~l~~-~~~r~~~gG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~ 233 (375)
T PTZ00452 155 SGEGVTHCVPVFEGHQIPQ-AITKINLAGRLCTDYLTQILQELGYSLTEPHQRIIVKNIKERLCYTALDPQDEKRIYKES 233 (375)
T ss_pred CCCCcceEEEEECCEEecc-ceEEeeccchHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccccCcHHHHHHHhhcc
Confidence 9999999999999999999 89999999999999999999988877653 568999999999999998876542
Q ss_pred -cccceEEecCCcEEEecceecccccccccCCcCCcccCCHHHHHHHHHhhcCCCCccccccccCceEEecCCCCccchH
Q 012375 322 -DTQASLEIAGEGWFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGLA 400 (465)
Q Consensus 322 -~~~~~~~lpd~~~i~l~~er~~~~E~LF~P~~~~~~~~~L~~~I~~sI~~~~~~dl~~r~~l~~NIvLtGG~S~ipGl~ 400 (465)
.....|+||||+.+.++.|||.+||+||+|++.|.+..||+++|.++|.+||+ |+ |+.|++||||+||+|++|||.
T Consensus 234 ~~~~~~y~LPDg~~i~l~~er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~-d~--r~~L~~nIvL~GG~Sl~~Gf~ 310 (375)
T PTZ00452 234 NSQDSPYKLPDGNILTIKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDL-DL--RQELCRNIVLSGGTTLFPGIA 310 (375)
T ss_pred CCcCceEECCCCCEEEeehHHhcCcccccChhhcCCCCCChhHHHHHHHHhCCH-hH--HHHhhccEEEecccccccCHH
Confidence 13457999999999999999999999999999999999999999999999998 87 799999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhcCCCCCccccccHHHHHhcCC
Q 012375 401 ERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGNLSTFPGAWCATKKQFRRKSR 460 (465)
Q Consensus 401 eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilasl~tf~~~w~ITk~eY~e~G~ 460 (465)
+||++||++++|... +++|.++++|++++|+||||+|++++|+++| |||+||+|+|.
T Consensus 311 ~RL~~El~~~~p~~~--~v~v~~~~~r~~~aW~GgSilasl~~f~~~~-vtk~eYeE~G~ 367 (375)
T PTZ00452 311 NRLSNELTNLVPSQL--KIQVAAPPDRRFSAWIGGSIQCTLSTQQPQW-IKRQEYDEQGP 367 (375)
T ss_pred HHHHHHHHHhCCCCc--eeEEecCCCcceeEEECchhhcCccchhhhE-eEHHHHhccCc
Confidence 999999999999765 4999999999999999999999999999999 99999999995
No 2
>PTZ00466 actin-like protein; Provisional
Probab=100.00 E-value=6.1e-72 Score=574.79 Aligned_cols=327 Identities=24% Similarity=0.524 Sum_probs=294.6
Q ss_pred CCccccccCCCCCCccEEEeCCcceEEEEEecCCCCCcccccccc-----------------cCC----------ccchH
Q 012375 112 LSFMHIYGQRAQVPGSVIIDGGSGYCKFGWSKYDCPSGRTATFLE-----------------FGN----------IESPM 164 (465)
Q Consensus 112 ~s~~~~y~~~~~~~~~VVID~GS~~~K~Gfage~~P~~~~~s~~~-----------------~G~----------~~~Pi 164 (465)
.++|+++. ..+||||+||+++|+||||++.|+.++|++++ +|+ +.+|+
T Consensus 4 ~~~~~~~~-----~~~iViD~GS~~~K~G~ag~~~P~~~~ps~vg~~k~~~~~~~~~~~~~~vG~~~~~~~~~~~l~~Pi 78 (380)
T PTZ00466 4 EYAKQLYS-----NQPIIIDNGTGYIKAGFAGEDVPNLVFPSYVGRPKYKRVMAGAVEGNIFVGNKAEEYRGLLKVTYPI 78 (380)
T ss_pred chHHHhcc-----CCeEEEECCCCcEEEeeCCCCCCCEeccceeeeecCccccccCCCCCeEECchhhhhCcCceeCccc
Confidence 45666663 35899999999999999999999999998652 232 34677
Q ss_pred -------HHHHHHHHHHHHhhcccCCCCCCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhh-ccCCeEEEeecchHHH
Q 012375 165 -------YSRLRHFFATIYSRMQVKPSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-LNVPAVCAINQATLAL 236 (465)
Q Consensus 165 -------~~~l~~~~~~~~~~L~v~~~~~pVll~ep~~~~~~~~~~~~~R~~~~e~l~e~lFE-~~vpav~~~~~~vlal 236 (465)
||.++.+|+++|++|+++|+++||+++++++++ +..|+ .++|+||| |++|+++++++++|++
T Consensus 79 ~~G~v~dwd~~e~iw~~~f~~l~v~~~~~pvllte~~~~~------~~~re----~~~e~lFE~~~~p~~~~~~~~~lsl 148 (380)
T PTZ00466 79 NHGIIENWNDMENIWIHVYNSMKINSEEHPVLLTEAPLNP------QKNKE----KIAEVFFETFNVPALFISIQAILSL 148 (380)
T ss_pred cCCeECCHHHHHHHHHHHHhhcccCCccCeEEEecCcccc------HHHHH----HHHHHHhccCCCCeEEEecchHHHH
Confidence 789999999999999999999999999998874 55554 56777888 9999999999999999
Q ss_pred HhcCCCceEEEeecCceeEEEEEeeCeeeccccEEEEeccHHHHHHHHHHHHHhcCCCCC---cHHHHHHHHHhcccccc
Q 012375 237 YAAKRTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFG---SLYTVRTLKEKLCYVAA 313 (465)
Q Consensus 237 ya~g~~tglVVDiG~~~T~v~PV~dG~vl~~~~~~~~~iGG~~lt~~L~~lL~~~~~~~~---~~~~v~~iKe~~c~v~~ 313 (465)
|++|++||+|||+|++.|+|+||+||+++.+ ++.++++||+++|++|+++|++++..+. ..++++++||++|||+.
T Consensus 149 ~a~g~~tglVVD~G~~~t~v~PV~~G~~~~~-~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~v~~iKe~~c~v~~ 227 (380)
T PTZ00466 149 YSCGKTNGTVLDCGDGVCHCVSIYEGYSITN-TITRTDVAGRDITTYLGYLLRKNGHLFNTSAEMEVVKNMKENCCYVSF 227 (380)
T ss_pred HhcCCceEEEEeCCCCceEEEEEECCEEeec-ceeEecCchhHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhCeEecC
Confidence 9999999999999999999999999999998 8999999999999999999998886654 35789999999999999
Q ss_pred chHHHhhcc----ccceEEecCCcEEEecceecccccccccCCcCCcccCCHHHHHHHHHhhcCCCCccccccccCceEE
Q 012375 314 DYKAELSKD----TQASLEIAGEGWFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVIL 389 (465)
Q Consensus 314 d~~~e~~~~----~~~~~~lpd~~~i~l~~er~~~~E~LF~P~~~~~~~~~L~~~I~~sI~~~~~~dl~~r~~l~~NIvL 389 (465)
|+.+++.+. ....|+||||+.+.++.|||.+||+||+|+++|.+..||+++|.++|.+||. |+ |+.|++||||
T Consensus 228 d~~~e~~~~~~~~~~~~y~LPdg~~i~l~~er~~~~E~LF~P~~~g~~~~gl~~~i~~sI~~c~~-d~--r~~L~~nIvL 304 (380)
T PTZ00466 228 NMNKEKNSSEKALTTLPYILPDGSQILIGSERYRAPEVLFNPSILGLEYLGLSELIVTSITRADM-DL--RRTLYSHIVL 304 (380)
T ss_pred ChHHHHhhccccccceeEECCCCcEEEEchHHhcCcccccCccccCCCCCCHHHHHHHHHHhCCh-hh--HHHHhhcEEE
Confidence 987765421 2367999999999999999999999999999999999999999999999998 87 7999999999
Q ss_pred ecCCCCccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhcCCCCCccccccHHHHHhcCC
Q 012375 390 TGGSACLPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGNLSTFPGAWCATKKQFRRKSR 460 (465)
Q Consensus 390 tGG~S~ipGl~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilasl~tf~~~w~ITk~eY~e~G~ 460 (465)
+||+|++|||.+||++||+.+.|...+ ++|..+++|++++|+||||+|++++|+++| |||+||+|+|.
T Consensus 305 ~GG~Sl~~Gf~~RL~~EL~~l~p~~~~--v~v~~~~~r~~~aW~GgSilasl~~f~~~~-itk~eYeE~G~ 372 (380)
T PTZ00466 305 SGGTTMFHGFGDRLLNEIRKFAPKDIT--IRISAPPERKFSTFIGGSILASLATFKKIW-ISKQEFDEYGS 372 (380)
T ss_pred eCCccccCCHHHHHHHHHHHhCCCCce--EEEecCCCCceeEEECchhhcCccchhhhE-eEHHHHhhhCc
Confidence 999999999999999999999998654 899999999999999999999999999999 99999999995
No 3
>KOG0676 consensus Actin and related proteins [Cytoskeleton]
Probab=100.00 E-value=2e-71 Score=556.42 Aligned_cols=316 Identities=34% Similarity=0.657 Sum_probs=287.9
Q ss_pred ccEEEeCCcceEEEEEecCCCCCccccccccc-----------------CC-------ccchH-------HHHHHHHHHH
Q 012375 126 GSVIIDGGSGYCKFGWSKYDCPSGRTATFLEF-----------------GN-------IESPM-------YSRLRHFFAT 174 (465)
Q Consensus 126 ~~VVID~GS~~~K~Gfage~~P~~~~~s~~~~-----------------G~-------~~~Pi-------~~~l~~~~~~ 174 (465)
.+||||+||++||+|||||+.|+.++|+.++. |+ +.+|+ |+.++.+|++
T Consensus 8 ~~vViDnGsg~~KaGfag~~~P~~v~ps~vg~~~~~~~~~~~~~~~~~vg~~a~~~~~l~~Pie~Giv~~wd~me~iw~~ 87 (372)
T KOG0676|consen 8 QAVVIDNGSGFVKAGFAGDDAPRAVFPSIVGRPRHQGVMAGMTQKDTYVGDEAESKRTLKYPIERGIVTDWDDMEKIWHH 87 (372)
T ss_pred ceEEEECCCceeecccCCCCCCceecceeccccccccccccccccccccchhhhccccccCccccccccchHHHHHHHHH
Confidence 79999999999999999999999999987642 11 24677 6789999998
Q ss_pred HH-hhcccCCCCCCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhh-ccCCeEEEeecchHHHHhcCCCceEEEeecCc
Q 012375 175 IY-SRMQVKPSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-LNVPAVCAINQATLALYAAKRTSGIVVNIGFQ 252 (465)
Q Consensus 175 ~~-~~L~v~~~~~pVll~ep~~~~~~~~~~~~~R~~~~e~l~e~lFE-~~vpav~~~~~~vlalya~g~~tglVVDiG~~ 252 (465)
+| +.|+++|++|||+++||+++| +++|++ +.|+||| ||+|++++..++++ |++|++||+|||+|++
T Consensus 88 if~~~L~~~Pee~pvllte~pl~p------~~nREk----~tqi~FE~fnvpa~yva~qavl--ya~g~ttG~VvD~G~g 155 (372)
T KOG0676|consen 88 LFYSELLVAPEEHPVLLTEPPLNP------KANREK----LTQIMFETFNVPALYVAIQAVL--YASGRTTGLVVDSGDG 155 (372)
T ss_pred HHHHhhccCcccCceEeecCCCCc------hHhHHH----HHHHhhhhcCccHhHHHHHHHH--HHcCCeeEEEEEcCCC
Confidence 77 689999999999999999875 788866 5566676 99999999777766 9999999999999999
Q ss_pred eeEEEEEeeCeeeccccEEEEeccHHHHHHHHHHHHHhcCCCCC---cHHHHHHHHHhccccccchHHHhhcc-----cc
Q 012375 253 VTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFG---SLYTVRTLKEKLCYVAADYKAELSKD-----TQ 324 (465)
Q Consensus 253 ~T~v~PV~dG~vl~~~~~~~~~iGG~~lt~~L~~lL~~~~~~~~---~~~~v~~iKe~~c~v~~d~~~e~~~~-----~~ 324 (465)
.|+++||+||+++++ ++.++++||+++|+||+..|.+++.++. ..++++++||++||++.|+++++... ..
T Consensus 156 vt~~vPI~eG~~lp~-ai~~ldl~G~dlt~~l~~~L~~~g~s~~~~~~~eIv~diKeklCyvald~~~e~~~~~~~~~l~ 234 (372)
T KOG0676|consen 156 VTHVVPIYEGYALPH-AILRLDLAGRDLTDYLLKQLRKRGYSFTTSAEFEIVRDIKEKLCYVALDFEEEEETANTSSSLE 234 (372)
T ss_pred ceeeeecccccccch-hhheecccchhhHHHHHHHHHhcccccccccHHHHHHHhHhhhcccccccchhhhccccccccc
Confidence 999999999999999 8999999999999999999999887765 36889999999999999999887641 34
Q ss_pred ceEEecCCcEEEecceecccccccccCCcCCcccCCHHHHHHHHHhhcCCCCccccccccCceEEecCCCCccchHHHHH
Q 012375 325 ASLEIAGEGWFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGLAERLE 404 (465)
Q Consensus 325 ~~~~lpd~~~i~l~~er~~~~E~LF~P~~~~~~~~~L~~~I~~sI~~~~~~dl~~r~~l~~NIvLtGG~S~ipGl~eRL~ 404 (465)
.+|++|||+.+.+++|||.+||+||+|+..|.+..||++++.++|.+|++ |+ |++|++||||+||++++|||.+||+
T Consensus 235 ~~y~lPDg~~i~i~~erf~~pE~lFqP~~~g~e~~gi~~~~~~sI~kcd~-dl--rk~L~~nivLsGGtT~~pGl~~Rl~ 311 (372)
T KOG0676|consen 235 SSYELPDGQKITIGNERFRCPEVLFQPSLLGMESPGIHELTVNSIMKCDI-DL--RKDLYENIVLSGGTTMFPGLADRLQ 311 (372)
T ss_pred ccccCCCCCEEecCCcccccchhcCChhhcCCCCCchhHHHHHHHHhCCh-hH--hHHHHhheEEeCCcccchhHHHHHH
Confidence 56999999999999999999999999999999999999999999999998 88 7899999999999999999999999
Q ss_pred HHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhcCCCCCccccccHHHHHhcCC
Q 012375 405 KELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGNLSTFPGAWCATKKQFRRKSR 460 (465)
Q Consensus 405 ~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilasl~tf~~~w~ITk~eY~e~G~ 460 (465)
+||+.+.|...+ ++|+++|+|.+++|+||||+|||++|+++| |||+||+|.|.
T Consensus 312 kEl~~l~P~~~~--ikv~~pp~r~~s~WlGgSIlaslstfq~~w-itk~eY~e~g~ 364 (372)
T KOG0676|consen 312 KELQALAPSTIK--IKVIAPPERKYSAWLGGSILASLSTFQQMW-ITKEEYEEHGP 364 (372)
T ss_pred HHHhhcCCCCcc--eEEecCcccccceecCceeEeecchHhhcc-ccHHHHhhhCC
Confidence 999999998775 999999999999999999999999999999 99999999994
No 4
>PTZ00281 actin; Provisional
Probab=100.00 E-value=1.9e-70 Score=563.84 Aligned_cols=322 Identities=30% Similarity=0.609 Sum_probs=290.2
Q ss_pred CCCCCCccEEEeCCcceEEEEEecCCCCCcccccccc-----------------cCC----------ccchH-------H
Q 012375 120 QRAQVPGSVIIDGGSGYCKFGWSKYDCPSGRTATFLE-----------------FGN----------IESPM-------Y 165 (465)
Q Consensus 120 ~~~~~~~~VVID~GS~~~K~Gfage~~P~~~~~s~~~-----------------~G~----------~~~Pi-------~ 165 (465)
+++. ++||||+||+++|+|||||+.|+.++|+.++ +|+ +.+|+ |
T Consensus 3 ~~~~--~~vViD~Gs~~~k~G~age~~P~~i~ps~vg~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~Pi~~G~i~dw 80 (376)
T PTZ00281 3 GEDV--QALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNW 80 (376)
T ss_pred CCcC--CeEEEECCCCeEEEeeCCCCCCCeeccccceeecCcccccCcccCCeEECchhhccccCcEEeccCcCCEEcCH
Confidence 4544 7899999999999999999999999988652 232 24566 7
Q ss_pred HHHHHHHHHHH-hhcccCCCCCCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhh-ccCCeEEEeecchHHHHhcCCCc
Q 012375 166 SRLRHFFATIY-SRMQVKPSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-LNVPAVCAINQATLALYAAKRTS 243 (465)
Q Consensus 166 ~~l~~~~~~~~-~~L~v~~~~~pVll~ep~~~~~~~~~~~~~R~~~~e~l~e~lFE-~~vpav~~~~~~vlalya~g~~t 243 (465)
+.++.+|+++| +.|+++|+++||+++||++++ +..| |.++|+||| |++|+++++++++|++|++|++|
T Consensus 81 d~~e~l~~~~f~~~l~v~p~~~pvllte~~~~~------~~~r----e~l~e~lFE~~~vp~~~~~~~~~ls~ya~g~~t 150 (376)
T PTZ00281 81 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNP------KANR----EKMTQIMFETFNTPAMYVAIQAVLSLYASGRTT 150 (376)
T ss_pred HHHHHHHHHHHHhhccCCCccCeEEEecCCCCc------HHHH----HHHHHHHhcccCCceeEeeccHHHHHHhcCCce
Confidence 89999999876 689999999999999999874 5555 557778888 99999999999999999999999
Q ss_pred eEEEeecCceeEEEEEeeCeeeccccEEEEeccHHHHHHHHHHHHHhcCCCCC---cHHHHHHHHHhccccccchHHHhh
Q 012375 244 GIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFG---SLYTVRTLKEKLCYVAADYKAELS 320 (465)
Q Consensus 244 glVVDiG~~~T~v~PV~dG~vl~~~~~~~~~iGG~~lt~~L~~lL~~~~~~~~---~~~~v~~iKe~~c~v~~d~~~e~~ 320 (465)
|+|||+|++.|+|+||+||+++.+ +++++++||+++|++|+++|.+++..+. +.+++++|||++|||+.|++.+++
T Consensus 151 glVVDiG~~~t~v~PV~dG~~~~~-~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~~~~ 229 (376)
T PTZ00281 151 GIVMDSGDGVSHTVPIYEGYALPH-AILRLDLAGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEAEMQ 229 (376)
T ss_pred EEEEECCCceEEEEEEEecccchh-heeeccCcHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcEEecCCchHHHH
Confidence 999999999999999999999998 8999999999999999999999887664 357899999999999999877654
Q ss_pred cc-----ccceEEecCCcEEEecceecccccccccCCcCCcccCCHHHHHHHHHhhcCCCCccccccccCceEEecCCCC
Q 012375 321 KD-----TQASLEIAGEGWFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSAC 395 (465)
Q Consensus 321 ~~-----~~~~~~lpd~~~i~l~~er~~~~E~LF~P~~~~~~~~~L~~~I~~sI~~~~~~dl~~r~~l~~NIvLtGG~S~ 395 (465)
.. ....|+||||+.+.++.|||.+||+||+|++.+.+..||+++|.++|.+||+ |+ |+.|++||||+||+|+
T Consensus 230 ~~~~~~~~~~~y~LPdg~~i~i~~er~~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~-d~--r~~L~~nIvl~GG~s~ 306 (376)
T PTZ00281 230 TAASSSALEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDV-DI--RKDLYGNVVLSGGTTM 306 (376)
T ss_pred hhhcCcccceeEECCCCCEEEeeHHHeeCcccccChhhcCCCCCCHHHHHHHHHHhCCh-hH--HHHHHhhccccCcccc
Confidence 32 2457999999999999999999999999999999999999999999999998 87 7999999999999999
Q ss_pred ccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhcCCCCCccccccHHHHHhcCC
Q 012375 396 LPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGNLSTFPGAWCATKKQFRRKSR 460 (465)
Q Consensus 396 ipGl~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilasl~tf~~~w~ITk~eY~e~G~ 460 (465)
+|||.+||++||++++|...+ ++|+.+++|++++|+||||+|++++|+++| |||+||+|+|.
T Consensus 307 ~~Gf~~RL~~El~~~~p~~~~--v~v~~~~~r~~~aW~Ggsilasl~~f~~~~-vtk~eY~E~G~ 368 (376)
T PTZ00281 307 FPGIADRMNKELTALAPSTMK--IKIIAPPERKYSVWIGGSILASLSTFQQMW-ISKEEYDESGP 368 (376)
T ss_pred CcCHHHHHHHHHHHhCCCCcc--eEEecCCCCceeEEECcccccCcccHhhce-eeHHHHhhhCc
Confidence 999999999999999998654 999999999999999999999999999998 99999999994
No 5
>PTZ00004 actin-2; Provisional
Probab=100.00 E-value=7.1e-68 Score=545.37 Aligned_cols=318 Identities=29% Similarity=0.596 Sum_probs=287.4
Q ss_pred ccEEEeCCcceEEEEEecCCCCCcccccccc-----------------cCC----------ccchH-------HHHHHHH
Q 012375 126 GSVIIDGGSGYCKFGWSKYDCPSGRTATFLE-----------------FGN----------IESPM-------YSRLRHF 171 (465)
Q Consensus 126 ~~VVID~GS~~~K~Gfage~~P~~~~~s~~~-----------------~G~----------~~~Pi-------~~~l~~~ 171 (465)
++||||+||+++|+||||++.|+.++|+.++ +|+ +++|+ |+.++.+
T Consensus 7 ~~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~Pi~~G~i~d~d~~e~i 86 (378)
T PTZ00004 7 NAAVVDNGSGMVKAGFAGDDAPRCVFPSIVGRPKNPGIMVGMEEKDCYVGDEAQDKRGILTLKYPIEHGIVTNWDDMEKI 86 (378)
T ss_pred CeEEEECCCCeEEEeeCCCCCCCEEccceeEEecccccccCcCCCceEECchhhcccccceEcccCcCCEEcCHHHHHHH
Confidence 6899999999999999999999999988652 232 34676 7899999
Q ss_pred HHHHH-hhcccCCCCCCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhh-ccCCeEEEeecchHHHHhcCCCceEEEee
Q 012375 172 FATIY-SRMQVKPSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-LNVPAVCAINQATLALYAAKRTSGIVVNI 249 (465)
Q Consensus 172 ~~~~~-~~L~v~~~~~pVll~ep~~~~~~~~~~~~~R~~~~e~l~e~lFE-~~vpav~~~~~~vlalya~g~~tglVVDi 249 (465)
|++++ ++|+++|.++||++++|++++ +..|+ .++|+||| |++|+++++++++|++|++|++||+|||+
T Consensus 87 ~~~~~~~~l~v~~~~~pvllte~~~~~------~~~r~----~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~~tglVVDi 156 (378)
T PTZ00004 87 WHHTFYNELRVAPEEHPVLLTEAPLNP------KANRE----KMTQIMFETHNVPAMYVAIQAVLSLYASGRTTGIVLDS 156 (378)
T ss_pred HHHHHHhhcccCCccCcceeecCCCCc------HHHHH----HHHHHHHhhcCCceEEeeccHHHHHHhcCCceEEEEEC
Confidence 99875 689999999999999998874 55554 56777777 99999999999999999999999999999
Q ss_pred cCceeEEEEEeeCeeeccccEEEEeccHHHHHHHHHHHHHhcCCCCC---cHHHHHHHHHhccccccchHHHhhcc----
Q 012375 250 GFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFG---SLYTVRTLKEKLCYVAADYKAELSKD---- 322 (465)
Q Consensus 250 G~~~T~v~PV~dG~vl~~~~~~~~~iGG~~lt~~L~~lL~~~~~~~~---~~~~v~~iKe~~c~v~~d~~~e~~~~---- 322 (465)
|++.|+|+||+||+++.+ +++++++||++++++|+++|..++..+. ..+++++|||++|||+.|+++++...
T Consensus 157 G~~~t~v~pV~dG~~l~~-~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~ 235 (378)
T PTZ00004 157 GDGVSHTVPIYEGYSLPH-AIHRLDVAGRDLTEYMMKILHERGTTFTTTAEKEIVRDIKEKLCYIALDFDEEMGNSAGSS 235 (378)
T ss_pred CCCcEEEEEEECCEEeec-ceeeecccHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHhhcceeecCCHHHHHhhhhcCc
Confidence 999999999999999998 8999999999999999999999887654 35789999999999999998776431
Q ss_pred --ccceEEecCCcEEEecceecccccccccCCcCCcc-cCCHHHHHHHHHhhcCCCCccccccccCceEEecCCCCccch
Q 012375 323 --TQASLEIAGEGWFTLSKERFQTGEILFQPRMADVR-TMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGL 399 (465)
Q Consensus 323 --~~~~~~lpd~~~i~l~~er~~~~E~LF~P~~~~~~-~~~L~~~I~~sI~~~~~~dl~~r~~l~~NIvLtGG~S~ipGl 399 (465)
....|+||||+.+.++.|||.+||+||+|++.+.+ ..||+++|.++|.+||+ |+ |+.|++||||+||+|++|||
T Consensus 236 ~~~~~~y~lPdg~~i~l~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~~~~-d~--r~~L~~nIvl~GG~s~~~Gf 312 (378)
T PTZ00004 236 DKYEESYELPDGTIITVGSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDI-DI--RKDLYGNIVLSGGTTMYRGL 312 (378)
T ss_pred cccceEEECCCCCEEEEcHHHeeCcccccChhhcCccccCChHHHHHHHHHhCCh-hH--HHHHHhhEEeccchhcCcCH
Confidence 24679999999999999999999999999998888 89999999999999998 87 79999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhcCCCCCccccccHHHHHhcCC
Q 012375 400 AERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGNLSTFPGAWCATKKQFRRKSR 460 (465)
Q Consensus 400 ~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilasl~tf~~~w~ITk~eY~e~G~ 460 (465)
.+||++||++++|...+ ++|..+++|++++|+||||+|++++|+++| |||+||+|+|.
T Consensus 313 ~~RL~~EL~~~~p~~~~--~~v~~~~~~~~~aW~Ggsilas~~~f~~~~-vtk~eYeE~G~ 370 (378)
T PTZ00004 313 PERLTKELTTLAPSTMK--IKVVAPPERKYSVWIGGSILSSLPTFQQMW-VTKEEYDESGP 370 (378)
T ss_pred HHHHHHHHHHhCCCCcc--EEEecCCCCceeEEECcccccCccchhhhE-eEHHHHhhhCc
Confidence 99999999999998754 899999999999999999999999999998 99999999994
No 6
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]
Probab=100.00 E-value=1.5e-67 Score=515.01 Aligned_cols=324 Identities=26% Similarity=0.507 Sum_probs=280.1
Q ss_pred cccCCCCCCccEEEeCCcceEEEEEecCCCCCccccccccc-----CC----------------------ccchH-----
Q 012375 117 IYGQRAQVPGSVIIDGGSGYCKFGWSKYDCPSGRTATFLEF-----GN----------------------IESPM----- 164 (465)
Q Consensus 117 ~y~~~~~~~~~VVID~GS~~~K~Gfage~~P~~~~~s~~~~-----G~----------------------~~~Pi----- 164 (465)
.|++++. ++||||+||++||+||||+|.|++++|++++. |+ +..|+
T Consensus 5 ~yggdEv--~alViDpGS~~traGyaged~Pk~ilPS~~G~~tk~~~d~~~~~~~y~~~~ai~~pr~gmEv~~~i~nGlv 82 (426)
T KOG0679|consen 5 VYGGDEV--SALVIDPGSHTTRAGYAGEDSPKAILPSVYGKVTKTDGDAEDKKGYYVDENAIHVPRPGMEVKTPIKNGLV 82 (426)
T ss_pred ccccccc--ceEEEeCCCceEeccccCCCCccccccceeeeeecccCccccccceEeechhccCCCCCCeeccchhcCCc
Confidence 7999998 99999999999999999999999999997652 11 11233
Q ss_pred --HHHHHHHHHHHHh-hcccCCCCCCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhh-ccCCeEEEeecchHHHHhcC
Q 012375 165 --YSRLRHFFATIYS-RMQVKPSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-LNVPAVCAINQATLALYAAK 240 (465)
Q Consensus 165 --~~~l~~~~~~~~~-~L~v~~~~~pVll~ep~~~~~~~~~~~~~R~~~~e~l~e~lFE-~~vpav~~~~~~vlalya~g 240 (465)
||.++..|++.|+ .|+++|.+||++++||++++ ++.|++ ++|+||| ++||+++++.+++|++||+|
T Consensus 83 ~dWD~~~~~w~~~~~~~Lk~~p~ehP~litEp~wN~------~~~Rek----~~ElmFE~~nvPAf~L~k~~v~~AFA~G 152 (426)
T KOG0679|consen 83 EDWDLFEMQWRYAYKNQLKVNPEEHPVLITEPPWNT------RANREK----LTELMFEKLNVPAFYLAKTAVCTAFANG 152 (426)
T ss_pred ccHHHHHHHHHHHHhhhhhcCccccceeeecCCCCc------HHHHHH----HHHHHHhhcCCceEEEechHHHHHHhcC
Confidence 6889999999996 79999999999999999874 777765 5667777 99999999999999999999
Q ss_pred CCceEEEeecCceeEEEEEeeCeeeccccEEEEeccHHHHHHHHHHHHHhcCCCCCcH----------------------
Q 012375 241 RTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFGSL---------------------- 298 (465)
Q Consensus 241 ~~tglVVDiG~~~T~v~PV~dG~vl~~~~~~~~~iGG~~lt~~L~~lL~~~~~~~~~~---------------------- 298 (465)
+.||+|||||+..|+|+||+||+++.+ ++.+.++||+.|+..++++|+..++++.+.
T Consensus 153 rstalVvDiGa~~~svsPV~DG~Vlqk-~vvks~laGdFl~~~~~q~l~~~~iei~P~y~ia~k~~v~~g~~an~~~~~~ 231 (426)
T KOG0679|consen 153 RSTALVVDIGATHTSVSPVHDGYVLQK-GVVKSPLAGDFLNDQCRQLLEPKNIEIIPMYNIASKEPVREGYPANAVLRVS 231 (426)
T ss_pred CCceEEEEecCCCceeeeeecceEeee-eeEecccchHHHHHHHHHHHhhcCcccCcHHHhhhcccccccCcchhhhcCC
Confidence 999999999999999999999999999 899999999999999999999987754221
Q ss_pred --------------HHHHHHHHhccccccc-hHHHhh-ccccceEEecCCcEEEecceecccccccccCCcCC-------
Q 012375 299 --------------YTVRTLKEKLCYVAAD-YKAELS-KDTQASLEIAGEGWFTLSKERFQTGEILFQPRMAD------- 355 (465)
Q Consensus 299 --------------~~v~~iKe~~c~v~~d-~~~e~~-~~~~~~~~lpd~~~i~l~~er~~~~E~LF~P~~~~------- 355 (465)
.+.++.|+.++.++.. |+++.. ....+.|++|||...++|.+||++||.||+|+...
T Consensus 232 ~~d~tes~~~y~~~~v~~e~ke~v~qv~dtp~de~~~~~i~~~~~efP~g~~~~~G~er~ripe~lF~Ps~v~~~s~~~~ 311 (426)
T KOG0679|consen 232 IPDLTESYHNYMEQRVYQEFKESVLQVSDTPFDEEVAAQIPTKHFEFPDGYTLDFGAERFRIPEYLFKPSLVKSSSKEAG 311 (426)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccccccCCCccccCCCCcccccCcceeecchhhcCcchhcccccccc
Confidence 1345556665555422 222221 23567899999999999999999999999998742
Q ss_pred -----cccCCHHHHHHHHHhhcCCCCccccccccCceEEecCCCCccchHHHHHHHHHhcCCCCCCCceEEeCCC---CC
Q 012375 356 -----VRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGLAERLEKELRGLLPSSISNGIRVIPPP---YG 427 (465)
Q Consensus 356 -----~~~~~L~~~I~~sI~~~~~~dl~~r~~l~~NIvLtGG~S~ipGl~eRL~~EL~~l~p~~~~~~v~v~~~~---~~ 427 (465)
....|+++++..||..||+ |+ |..|+.|||+|||+|+|+||.+||.+||..+.|.+ +++++++. +|
T Consensus 312 ~~~~~n~~lG~~~lv~sSi~~cDv-di--R~~L~~nVivtGGtSliqG~s~RL~~ELs~~~P~s---rlki~as~~t~eR 385 (426)
T KOG0679|consen 312 ATSHINTMLGLPHLVYSSINMCDV-DI--RSSLLGNVIVTGGTSLIQGFSERLNKELSKRAPSS---RLKIIASGHTVER 385 (426)
T ss_pred CCCCCccccCchHHHHhhhccChH-HH--HHHhhccEEEecCcchhhhHHHHHHHHHHHhCCcc---eEEEEecCceeee
Confidence 2346999999999999999 88 79999999999999999999999999999999987 59998865 79
Q ss_pred cchhhhhhHHhhcCCCCCccccccHHHHHhcCC
Q 012375 428 ADTAWFGAKLVGNLSTFPGAWCATKKQFRRKSR 460 (465)
Q Consensus 428 ~~~aW~Ggsilasl~tf~~~w~ITk~eY~e~G~ 460 (465)
++++|+||||||||++|+++| |+|+||||.|+
T Consensus 386 ~~~~WlGGSILASLgtFqq~W-iSKqEYEE~G~ 417 (426)
T KOG0679|consen 386 RFQSWLGGSILASLGTFQQLW-ISKQEYEEVGK 417 (426)
T ss_pred hhhhhhhhHHHhccccHHHHh-hhHHHHHHhhh
Confidence 999999999999999999999 99999999996
No 7
>PTZ00280 Actin-related protein 3; Provisional
Probab=100.00 E-value=5.7e-65 Score=529.84 Aligned_cols=320 Identities=23% Similarity=0.468 Sum_probs=279.5
Q ss_pred ccEEEeCCcceEEEEEecCCCCCcccccccc--------------------cCC----------ccchH-------HHHH
Q 012375 126 GSVIIDGGSGYCKFGWSKYDCPSGRTATFLE--------------------FGN----------IESPM-------YSRL 168 (465)
Q Consensus 126 ~~VVID~GS~~~K~Gfage~~P~~~~~s~~~--------------------~G~----------~~~Pi-------~~~l 168 (465)
++||||+||+++|+||||++.|+.++|++++ +|+ +.+|| |+.+
T Consensus 5 ~~iViD~GS~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~vG~ea~~~~~~~~l~~Pi~~G~I~dwd~~ 84 (414)
T PTZ00280 5 PVVVIDNGTGYTKMGYAGNTEPTYIIPTLIADNSKQSRRRSKKGFEDLDFYIGDEALAASKSYTLTYPMKHGIVEDWDLM 84 (414)
T ss_pred CeEEEECCCCceEeeeCCCCCCCEEecceeEEeccccccccccccccCCEEEcchhhhCcCCcEEecCccCCEeCCHHHH
Confidence 5899999999999999999999998887642 232 24576 6789
Q ss_pred HHHHHHHH-hhcccCCCCCCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhh-ccCCeEEEeecchHHHHhc-------
Q 012375 169 RHFFATIY-SRMQVKPSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-LNVPAVCAINQATLALYAA------- 239 (465)
Q Consensus 169 ~~~~~~~~-~~L~v~~~~~pVll~ep~~~~~~~~~~~~~R~~~~e~l~e~lFE-~~vpav~~~~~~vlalya~------- 239 (465)
+.+|++++ +.|+++|++||+++++|++++ +..|++ ++|+||| |++|++++.++++|++|++
T Consensus 85 e~l~~~~~~~~L~~~p~~~~vllte~~~~~------~~~Re~----l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~ 154 (414)
T PTZ00280 85 EKFWEQCIFKYLRCEPEEHYFILTEPPMNP------PENREY----TAEIMFETFNVKGLYIAVQAVLALRASWTSKKAK 154 (414)
T ss_pred HHHHHHHHHHhhccCCCCCceEEeeCCCCc------HHHHHH----HHHHHhhccCCCeEEEecCHHHhHhhhccccccc
Confidence 99999865 789999999999999999875 555654 6677777 9999999999999999999
Q ss_pred ---CCCceEEEeecCceeEEEEEeeCeeeccccEEEEeccHHHHHHHHHHHHHhcCCCCCc---HHHHHHHHHhcccccc
Q 012375 240 ---KRTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFGS---LYTVRTLKEKLCYVAA 313 (465)
Q Consensus 240 ---g~~tglVVDiG~~~T~v~PV~dG~vl~~~~~~~~~iGG~~lt~~L~~lL~~~~~~~~~---~~~v~~iKe~~c~v~~ 313 (465)
|++||+|||+|++.|+|+||++|+++.+ +++++++||+++|++|+++|++++..+.. .+++++|||++||++.
T Consensus 155 ~~~g~~tglVVDiG~~~T~i~PV~~G~~l~~-~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~ 233 (414)
T PTZ00280 155 ELGGTLTGTVIDSGDGVTHVIPVVDGYVIGS-SIKHIPLAGRDITNFIQQMLRERGEPIPAEDILLLAQRIKEKYCYVAP 233 (414)
T ss_pred ccCCceeEEEEECCCCceEEEEEECCEEccc-ceEEecCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCcccC
Confidence 9999999999999999999999999998 88999999999999999999998876643 5789999999999999
Q ss_pred chHHHhhcc------ccceEEecC---Cc--EEEecceecccccccccCCcCCcc-cCCHHHHHHHHHhhcCCCCccccc
Q 012375 314 DYKAELSKD------TQASLEIAG---EG--WFTLSKERFQTGEILFQPRMADVR-TMGLDQAVALCMDHCHYAELSGDD 381 (465)
Q Consensus 314 d~~~e~~~~------~~~~~~lpd---~~--~i~l~~er~~~~E~LF~P~~~~~~-~~~L~~~I~~sI~~~~~~dl~~r~ 381 (465)
|+.+++... ....|++|| |+ .+.++.|||.+||+||+|++++.+ ..||+++|.++|++||+ |+ |+
T Consensus 234 d~~~e~~~~~~~~~~~~~~~~~~d~~~g~~~~i~l~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~~~~-d~--r~ 310 (414)
T PTZ00280 234 DIAKEFEKYDSDPKNHFKKYTAVNSVTKKPYTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQSCPI-DC--RR 310 (414)
T ss_pred cHHHHHHHhhcCcccccceEECCCCCCCCccEEEechHHhcCcccccChhhcCCccCCCHHHHHHHHHHhCCh-hh--HH
Confidence 988776531 224588887 33 789999999999999999987655 45999999999999998 87 79
Q ss_pred cccCceEEecCCCCccchHHHHHHHHHhcCCCC--------------CCCceEEeCCCCCcchhhhhhHHhhcCCCCCcc
Q 012375 382 AWFKTVILTGGSACLPGLAERLEKELRGLLPSS--------------ISNGIRVIPPPYGADTAWFGAKLVGNLSTFPGA 447 (465)
Q Consensus 382 ~l~~NIvLtGG~S~ipGl~eRL~~EL~~l~p~~--------------~~~~v~v~~~~~~~~~aW~Ggsilasl~tf~~~ 447 (465)
+|++||+|+||+|++|||.+||++||+++++.. ...+++|++++++++++|+||||+|++++|+++
T Consensus 311 ~L~~nIvL~GG~s~~~Gf~eRL~~El~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~W~GgSilas~~~f~~~ 390 (414)
T PTZ00280 311 PLYKNIVLSGGSTMFKGFDKRLQRDVRKRVDRRLKKAEELSGGKLKPIPIDVNVVSHPRQRYAVWYGGSMLASSPEFEKV 390 (414)
T ss_pred HHhhcEEEeCCcccCcCHHHHHHHHHHHhccccccccccccccccCCCCceEEEecCCccceeEEEChhhcccCcchhhh
Confidence 999999999999999999999999999987421 112488888889999999999999999999999
Q ss_pred ccccHHHHHhcCC
Q 012375 448 WCATKKQFRRKSR 460 (465)
Q Consensus 448 w~ITk~eY~e~G~ 460 (465)
| |||+||+|+|.
T Consensus 391 ~-itk~eY~E~G~ 402 (414)
T PTZ00280 391 C-HTKAEYDEYGP 402 (414)
T ss_pred e-EEHHHHhccCh
Confidence 8 99999999994
No 8
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton]
Probab=100.00 E-value=3.6e-65 Score=475.15 Aligned_cols=319 Identities=26% Similarity=0.497 Sum_probs=286.2
Q ss_pred ccEEEeCCcceEEEEEecCCCCCcccccccc-------------------cC----------CccchH-------HHHHH
Q 012375 126 GSVIIDGGSGYCKFGWSKYDCPSGRTATFLE-------------------FG----------NIESPM-------YSRLR 169 (465)
Q Consensus 126 ~~VVID~GS~~~K~Gfage~~P~~~~~s~~~-------------------~G----------~~~~Pi-------~~~l~ 169 (465)
++||.|+|++++|+||||++.|.+++|+.++ +| ++.+|| |+.++
T Consensus 5 ~viV~DnGTGfVKcGyAg~NFP~~~FPs~VGRPilR~~e~~g~~~iKD~mvGdeaselRs~L~i~YPmeNGivrnwddM~ 84 (389)
T KOG0677|consen 5 NVIVCDNGTGFVKCGYAGENFPTHIFPSIVGRPILRAEEKVGNIEIKDLMVGDEASELRSLLDINYPMENGIVRNWDDME 84 (389)
T ss_pred CeEEEeCCCceEEeccccCCCcccccchhcCchhhhhhhhccCeehhhheccchHHHHHHHHhcCCccccccccChHHHH
Confidence 6899999999999999999999999998763 23 256787 68899
Q ss_pred HHHHHH-HhhcccCCCCCCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhh-ccCCeEEEeecchHHHHhcCCCceEEE
Q 012375 170 HFFATI-YSRMQVKPSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-LNVPAVCAINQATLALYAAKRTSGIVV 247 (465)
Q Consensus 170 ~~~~~~-~~~L~v~~~~~pVll~ep~~~~~~~~~~~~~R~~~~e~l~e~lFE-~~vpav~~~~~~vlalya~g~~tglVV 247 (465)
++|++. +++|+++|.+..++++||+.+| ..+|++ ++|+||| +++.++++.-|+++++|+.|..||+||
T Consensus 85 h~WDytF~ekl~idp~~~KiLLTePPmNP------~kNREK----m~evMFEkY~F~gvyvaiQAVLtLYAQGL~tGvVv 154 (389)
T KOG0677|consen 85 HVWDYTFGEKLKIDPTNCKILLTEPPMNP------TKNREK----MIEVMFEKYGFGGVYVAIQAVLTLYAQGLLTGVVV 154 (389)
T ss_pred HHHHhhhhhhccCCCccCeEEeeCCCCCc------cccHHH----HHHHHHHHcCCCeEEehHHHHHHHHHhcccceEEE
Confidence 999975 4799999999999999999986 567755 6777888 999999999999999999999999999
Q ss_pred eecCceeEEEEEeeCeeeccccEEEEeccHHHHHHHHHHHHHhcCCCCC---cHHHHHHHHHhccccccchHHHhhcc--
Q 012375 248 NIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFG---SLYTVRTLKEKLCYVAADYKAELSKD-- 322 (465)
Q Consensus 248 DiG~~~T~v~PV~dG~vl~~~~~~~~~iGG~~lt~~L~~lL~~~~~~~~---~~~~v~~iKe~~c~v~~d~~~e~~~~-- 322 (465)
|.|.+.|+|+||++|+++++ -.++++++|+++|+||.++|.++|+.|+ +.+++++|||++||++.|++.+.+..
T Consensus 155 DSGDGVTHi~PVye~~~l~H-LtrRldvAGRdiTryLi~LLl~rGYafN~tADFETVR~iKEKLCYisYd~e~e~kLalE 233 (389)
T KOG0677|consen 155 DSGDGVTHIVPVYEGFVLPH-LTRRLDVAGRDITRYLIKLLLRRGYAFNHTADFETVREIKEKLCYISYDLELEQKLALE 233 (389)
T ss_pred ecCCCeeEEeeeecceehhh-hhhhccccchhHHHHHHHHHHhhccccccccchHHHHHHHhhheeEeechhhhhHhhhh
Confidence 99999999999999999999 7899999999999999999999999886 47899999999999999987663321
Q ss_pred ---ccceEEecCCcEEEecceecccccccccCCcCCcccCCHHHHHHHHHhhcCCCCccccccccCceEEecCCCCccch
Q 012375 323 ---TQASLEIAGEGWFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGL 399 (465)
Q Consensus 323 ---~~~~~~lpd~~~i~l~~er~~~~E~LF~P~~~~~~~~~L~~~I~~sI~~~~~~dl~~r~~l~~NIvLtGG~S~ipGl 399 (465)
...+|+||||..|.++.|||.+||.||+|.+++.+.+|+.+++.++|+..++ |. |..++++|||+||+++.||+
T Consensus 234 TTvLv~~YtLPDGRvIkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDi-D~--R~~lYkhIVLSGGstMYPGL 310 (389)
T KOG0677|consen 234 TTVLVESYTLPDGRVIKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADI-DI--RSELYKHIVLSGGSTMYPGL 310 (389)
T ss_pred heeeeeeeecCCCcEEEecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhcc-ch--HHHHHhHeeecCCcccCCCC
Confidence 3478999999999999999999999999999999999999999999999988 76 89999999999999999999
Q ss_pred HHHHHHHHHhcCC-----CC----CCCceEEeCCCCCcchhhhhhHHhhcC-CCCCccccccHHHHHhcC
Q 012375 400 AERLEKELRGLLP-----SS----ISNGIRVIPPPYGADTAWFGAKLVGNL-STFPGAWCATKKQFRRKS 459 (465)
Q Consensus 400 ~eRL~~EL~~l~p-----~~----~~~~v~v~~~~~~~~~aW~Ggsilasl-~tf~~~w~ITk~eY~e~G 459 (465)
..||++||+++.- .+ .+.++++-.||.|++.+++||+.+|++ ..-+++| +||+||+|.|
T Consensus 311 PSRLEkElkqlyl~rVL~~d~~~l~KfkiRIEdPPrRKhMVflGGAVLA~imkD~d~fW-~skqeyqE~G 379 (389)
T KOG0677|consen 311 PSRLEKELKQLYLDRVLKGDTDKLKKFKIRIEDPPRRKHMVFLGGAVLAGIMKDKDEFW-MSKQEYQEEG 379 (389)
T ss_pred cHHHHHHHHHHHHHHHHcCChhhhhheEEeccCCCccceeEEEchHHHHHHhcCCccce-ecHHHHHhhh
Confidence 9999999998742 11 123577888999999999999999995 6667899 9999999999
No 9
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=100.00 E-value=6.1e-64 Score=518.68 Aligned_cols=319 Identities=34% Similarity=0.642 Sum_probs=270.5
Q ss_pred CccEEEeCCcceEEEEEecCCCCCcccccccc------------cCC----------ccchH-------HHHHHHHHHHH
Q 012375 125 PGSVIIDGGSGYCKFGWSKYDCPSGRTATFLE------------FGN----------IESPM-------YSRLRHFFATI 175 (465)
Q Consensus 125 ~~~VVID~GS~~~K~Gfage~~P~~~~~s~~~------------~G~----------~~~Pi-------~~~l~~~~~~~ 175 (465)
.++||||+||++||+|||||+.|+.++|+.+. +|+ +.+|+ |+.++.+|+++
T Consensus 4 ~~~vViD~Gs~~~k~G~age~~P~~v~ps~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~i~~~~~~e~i~~~~ 83 (393)
T PF00022_consen 4 NKPVVIDNGSSTIKAGFAGEDLPRVVIPSVVGRPRDKNSSNDYYVGDEALSPRSNLELRSPIENGVIVDWDALEEIWDYI 83 (393)
T ss_dssp SSEEEEEECSSEEEEEETTSSS-SEEEESEEEEESSSSSSSSCEETHHHHHTGTGEEEEESEETTEESSHHHHHHHHHHH
T ss_pred CCEEEEECCCceEEEEECCCCCCCCcCCCccccccccccceeEEeecccccchhheeeeeeccccccccccccccccccc
Confidence 38999999999999999999999999987642 221 22444 68899999998
Q ss_pred Hh-hcccCCCCCCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhh-ccCCeEEEeecchHHHHhcCCCceEEEeecCce
Q 012375 176 YS-RMQVKPSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-LNVPAVCAINQATLALYAAKRTSGIVVNIGFQV 253 (465)
Q Consensus 176 ~~-~L~v~~~~~pVll~ep~~~~~~~~~~~~~R~~~~e~l~e~lFE-~~vpav~~~~~~vlalya~g~~tglVVDiG~~~ 253 (465)
|. .|+++++++||++++|++++ +..| +.++|+||| |++|+++++++++||+|++|++||||||+|++.
T Consensus 84 ~~~~l~~~~~~~~vll~~~~~~~------~~~r----~~l~e~lfE~~~~~~v~~~~~~~~a~~~~g~~tglVVD~G~~~ 153 (393)
T PF00022_consen 84 FSNLLKVDPSDHPVLLTEPPFNP------RSQR----EKLAEILFEKFGVPSVYFIPSPLLALYASGRTTGLVVDIGYSS 153 (393)
T ss_dssp HHTTT-SSGGGSEEEEEESTT--------HHHH----HHHHHHHHHTS--SEEEEEEHHHHHHHHTTBSSEEEEEESSS-
T ss_pred cccccccccccceeeeeccccCC------chhh----hhhhhhhhcccccceeeeeecccccccccccccccccccceee
Confidence 86 58999999999999998764 4555 457777787 999999999999999999999999999999999
Q ss_pred eEEEEEeeCeeeccccEEEEeccHHHHHHHHHHHHHhcCCCC--------------------CcHHHHHHHHHhcccccc
Q 012375 254 TSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINF--------------------GSLYTVRTLKEKLCYVAA 313 (465)
Q Consensus 254 T~v~PV~dG~vl~~~~~~~~~iGG~~lt~~L~~lL~~~~~~~--------------------~~~~~v~~iKe~~c~v~~ 313 (465)
|+|+||+||+++.+ +++++++||++++++|+++|+++++.. ....+++++|+++|+++.
T Consensus 154 t~v~pV~dG~~~~~-~~~~~~~GG~~lt~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~ 232 (393)
T PF00022_consen 154 TSVVPVVDGYVLPH-SIKRSPIGGDDLTEYLKELLKERNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSE 232 (393)
T ss_dssp EEEEEEETTEE-GG-GBEEES-SHHHHHHHHHHHHHHT-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGS
T ss_pred eeeeeeeecccccc-ccccccccHHHHHHHHHHHHHhhccccccccccccccccccccccchhhhccchhccchhhhccc
Confidence 99999999999998 899999999999999999999974432 124679999999999999
Q ss_pred chHH-Hh---hccccceEEecCCcEEEecceecccccccccCCcCCcccC-------CHHHHHHHHHhhcCCCCcccccc
Q 012375 314 DYKA-EL---SKDTQASLEIAGEGWFTLSKERFQTGEILFQPRMADVRTM-------GLDQAVALCMDHCHYAELSGDDA 382 (465)
Q Consensus 314 d~~~-e~---~~~~~~~~~lpd~~~i~l~~er~~~~E~LF~P~~~~~~~~-------~L~~~I~~sI~~~~~~dl~~r~~ 382 (465)
+... +. .......|+||||+.+.++.+|+.+||+||+|...+.+.. ||+++|.++|.+|++ |+ |+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~lPdg~~i~~~~er~~~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~~~~-d~--r~~ 309 (393)
T PF00022_consen 233 DPDEEQEEQASENPEKSYELPDGQTIILGKERFRIPEILFNPSLIGIDSASEPSEFMGLPELILDSISKCPI-DL--RKE 309 (393)
T ss_dssp SHHHHHHHHHCSTTTEEEE-TTSSEEEESTHHHHHHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHHTSTT-TT--HHH
T ss_pred ccccccccccccccceecccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccc-cc--ccc
Confidence 8764 11 1235678999999999999999999999999999887765 999999999999998 87 799
Q ss_pred ccCceEEecCCCCccchHHHHHHHHHhcCCCCCCCceEEeCCC-CCcchhhhhhHHhhcCCCCCccccccHHHHHhcCC
Q 012375 383 WFKTVILTGGSACLPGLAERLEKELRGLLPSSISNGIRVIPPP-YGADTAWFGAKLVGNLSTFPGAWCATKKQFRRKSR 460 (465)
Q Consensus 383 l~~NIvLtGG~S~ipGl~eRL~~EL~~l~p~~~~~~v~v~~~~-~~~~~aW~Ggsilasl~tf~~~w~ITk~eY~e~G~ 460 (465)
|++||+||||+|++|||.+||++||+.+.|...+ ++|+.++ +|.+++|+||||+|++++|+++| |||+||+|+|.
T Consensus 310 l~~nIvl~GG~S~i~G~~eRL~~eL~~~~~~~~~--~~v~~~~~~~~~~aW~Ggsilasl~~f~~~~-itr~eYeE~G~ 385 (393)
T PF00022_consen 310 LLSNIVLTGGSSLIPGFKERLQQELRSLLPSSTK--VKVIAPPSDRQFAAWIGGSILASLSSFQSFW-ITREEYEEYGP 385 (393)
T ss_dssp HHTTEEEESGGGGSTTHHHHHHHHHHHHSGTTST--EEEE--T-TTTSHHHHHHHHHHTSGGGGGTS-EEHHHHHHHGG
T ss_pred cccceEEecccccccchHHHHHHHhhhhhhcccc--ceeccCchhhhhcccccceeeecccccccee-eeHHHHhCcCc
Confidence 9999999999999999999999999999887764 9999988 99999999999999999999998 99999999994
No 10
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=100.00 E-value=1.8e-61 Score=497.17 Aligned_cols=318 Identities=31% Similarity=0.648 Sum_probs=284.1
Q ss_pred ccEEEeCCcceEEEEEecCCCCCcccccccc----------------cCC----------ccchH-------HHHHHHHH
Q 012375 126 GSVIIDGGSGYCKFGWSKYDCPSGRTATFLE----------------FGN----------IESPM-------YSRLRHFF 172 (465)
Q Consensus 126 ~~VVID~GS~~~K~Gfage~~P~~~~~s~~~----------------~G~----------~~~Pi-------~~~l~~~~ 172 (465)
++||||+||++||+||+|++.|++++|+++. +|+ +.+|+ |+.++.+|
T Consensus 2 ~~iviD~Gs~~~k~G~~~~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~G~~a~~~~~~~~~~~P~~~G~i~d~~~~e~i~ 81 (373)
T smart00268 2 PAIVIDNGSGTIKAGFAGEDEPQVVFPSIVGRPKDGKGMVGDAKDTFVGDEAQEKRGGLELKYPIEHGIVENWDDMEKIW 81 (373)
T ss_pred CeEEEECCCCcEEEeeCCCCCCcEEccceeeEecccccccCCCcceEecchhhhcCCCceecCCCcCCEEeCHHHHHHHH
Confidence 5799999999999999999999999987642 122 34676 67899999
Q ss_pred HHHHh-hcccCCCCCCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhh-ccCCeEEEeecchHHHHhcCCCceEEEeec
Q 012375 173 ATIYS-RMQVKPSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-LNVPAVCAINQATLALYAAKRTSGIVVNIG 250 (465)
Q Consensus 173 ~~~~~-~L~v~~~~~pVll~ep~~~~~~~~~~~~~R~~~~e~l~e~lFE-~~vpav~~~~~~vlalya~g~~tglVVDiG 250 (465)
+++++ .|+++|+++||++++|.+++ ...| +.+++++|| +++|++++++++++++|++|.++|+|||+|
T Consensus 82 ~~~~~~~l~~~~~~~~vll~~p~~~~------~~~r----~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG 151 (373)
T smart00268 82 DYTFFNELRVEPEEHPVLLTEPPMNP------KSNR----EKILEIMFETFNFPALYIAIQAVLSLYASGRTTGLVIDSG 151 (373)
T ss_pred HHHHhhhcCCCCccCeeEEecCCCCC------HHHH----HHHHHHhhccCCCCeEEEeccHHHHHHhCCCCEEEEEecC
Confidence 99987 79999999999999998764 4455 457777887 999999999999999999999999999999
Q ss_pred CceeEEEEEeeCeeeccccEEEEeccHHHHHHHHHHHHHhcCCCCC---cHHHHHHHHHhccccccchHHHhhcc-----
Q 012375 251 FQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFG---SLYTVRTLKEKLCYVAADYKAELSKD----- 322 (465)
Q Consensus 251 ~~~T~v~PV~dG~vl~~~~~~~~~iGG~~lt~~L~~lL~~~~~~~~---~~~~v~~iKe~~c~v~~d~~~e~~~~----- 322 (465)
++.|+|+||+||+++.+ +++++++||++++++|+++|++++..+. ..++++++|+++||++.++++++...
T Consensus 152 ~~~t~v~pv~~G~~~~~-~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~ 230 (373)
T smart00268 152 DGVTHVVPVVDGYVLPH-AIKRIDIAGRDLTDYLKELLSERGYQFNSSAEFEIVREIKEKLCYVAEDFEKEMKKARESSE 230 (373)
T ss_pred CCcceEEEEECCEEchh-hheeccCcHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHhhhheeeecCChHHHHHHhhhccc
Confidence 99999999999999998 8899999999999999999988554432 35789999999999999887765421
Q ss_pred ---ccceEEecCCcEEEecceecccccccccCCcCCcccCCHHHHHHHHHhhcCCCCccccccccCceEEecCCCCccch
Q 012375 323 ---TQASLEIAGEGWFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGL 399 (465)
Q Consensus 323 ---~~~~~~lpd~~~i~l~~er~~~~E~LF~P~~~~~~~~~L~~~I~~sI~~~~~~dl~~r~~l~~NIvLtGG~S~ipGl 399 (465)
....|++|||+.+.++.+|+.+||+||+|+..+.+..+|+++|.++|++||+ |+ |+.|++||+||||+|++|||
T Consensus 231 ~~~~~~~~~lpdg~~~~~~~er~~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~-d~--r~~l~~nIvltGG~s~i~Gl 307 (373)
T smart00268 231 SSKLEKTYELPDGNTIKVGNERFRIPEILFKPELIGLEQKGIHELVYESIQKCDI-DV--RKDLYENIVLSGGSTLIPGF 307 (373)
T ss_pred ccccceeEECCCCCEEEEChHHeeCchhcCCchhcCCCcCCHHHHHHHHHHhCCH-hH--HHHHHhCeEeecccccCcCH
Confidence 2457999999999999999999999999999998999999999999999998 87 79999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhcCCCCCccccccHHHHHhcCC
Q 012375 400 AERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGNLSTFPGAWCATKKQFRRKSR 460 (465)
Q Consensus 400 ~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilasl~tf~~~w~ITk~eY~e~G~ 460 (465)
.+||++||+.+.|... ++++..++++.+++|+||||+|++++|++.| |||+||+|+|.
T Consensus 308 ~~RL~~el~~~~p~~~--~v~v~~~~~~~~~~W~G~silas~~~f~~~~-vtk~eY~E~G~ 365 (373)
T smart00268 308 GERLEKELKQLAPKKL--KVKVIAPPERKYSVWLGGSILASLSTFEDMW-ITKKEYEEHGS 365 (373)
T ss_pred HHHHHHHHHHhCCCCc--eeEEecCCCCccceEeCcccccCccchhhhE-EEHHHHhhhCc
Confidence 9999999999998765 4888888899999999999999999999988 99999999994
No 11
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=100.00 E-value=1.4e-59 Score=482.88 Aligned_cols=320 Identities=32% Similarity=0.610 Sum_probs=281.3
Q ss_pred cEEEeCCcceEEEEEecCCCCCcccccccc-----------------cCC-----------ccchH-------HHHHHHH
Q 012375 127 SVIIDGGSGYCKFGWSKYDCPSGRTATFLE-----------------FGN-----------IESPM-------YSRLRHF 171 (465)
Q Consensus 127 ~VVID~GS~~~K~Gfage~~P~~~~~s~~~-----------------~G~-----------~~~Pi-------~~~l~~~ 171 (465)
+||||+||+++|+||+|++.|+.++|+.+. +|+ +.+|+ |+.++.+
T Consensus 1 ~iViD~Gs~~~r~G~a~~~~p~~~~ps~v~~~~~~~~~~~~~~~~~~~G~~a~~~~~~~~~~~~P~~~G~i~d~~~~e~~ 80 (371)
T cd00012 1 AVVIDNGSGTIKAGFAGEDAPRVVFPSCVGRPKHQSVMVGAGDKDYFVGEEALEKRGLGLELIYPIEHGIVVDWDDMEKI 80 (371)
T ss_pred CEEEECCCCeEEEEeCCCCCCceEeeccceeecCcccccccCCCceEEchhhhhCCCCceEEcccccCCEEeCHHHHHHH
Confidence 599999999999999999999998887652 221 24566 6788999
Q ss_pred HHHHHh-hcccCCCCCCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhh-ccCCeEEEeecchHHHHhcCCCceEEEee
Q 012375 172 FATIYS-RMQVKPSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-LNVPAVCAINQATLALYAAKRTSGIVVNI 249 (465)
Q Consensus 172 ~~~~~~-~L~v~~~~~pVll~ep~~~~~~~~~~~~~R~~~~e~l~e~lFE-~~vpav~~~~~~vlalya~g~~tglVVDi 249 (465)
|+++|+ .|.++++++||++++|.+++ ...| +.++++||| +++|++++++++++|+|++|.++|+|||+
T Consensus 81 ~~~~~~~~l~~~~~~~~vvl~~p~~~~------~~~r----~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDi 150 (371)
T cd00012 81 WDHLFFNELKVNPEEHPVLLTEPPLNP------KSNR----EKTTEIMFETFNVPALYVAIQAVLSLYASGRTTGLVVDS 150 (371)
T ss_pred HHHHHHHhcCCCCCCCceEEecCCCCC------HHHH----HHHHHHhhccCCCCEEEEechHHHHHHhcCCCeEEEEEC
Confidence 999886 57888899999999998764 4444 457778888 99999999999999999999999999999
Q ss_pred cCceeEEEEEeeCeeeccccEEEEeccHHHHHHHHHHHHHhcCCCC---CcHHHHHHHHHhccccccchHHHhh------
Q 012375 250 GFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINF---GSLYTVRTLKEKLCYVAADYKAELS------ 320 (465)
Q Consensus 250 G~~~T~v~PV~dG~vl~~~~~~~~~iGG~~lt~~L~~lL~~~~~~~---~~~~~v~~iKe~~c~v~~d~~~e~~------ 320 (465)
|++.|+|+||+||+++.+ +++++++||++++++|+++|+.++..+ .....++++||++||++.++.++..
T Consensus 151 G~~~t~i~pv~~G~~~~~-~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~ 229 (371)
T cd00012 151 GDGVTHVVPVYDGYVLPH-AIKRLDLAGRDLTRYLKELLRERGYELNSSDEREIVRDIKEKLCYVALDIEEEQDKSAKET 229 (371)
T ss_pred CCCeeEEEEEECCEEchh-hheeccccHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHhheeecCCHHHHHHhhhccC
Confidence 999999999999999998 789999999999999999999888643 2457899999999999998876641
Q ss_pred ccccceEEecCCcEEEecceecccccccccCCcCCcccCCHHHHHHHHHhhcCCCCccccccccCceEEecCCCCccchH
Q 012375 321 KDTQASLEIAGEGWFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGLA 400 (465)
Q Consensus 321 ~~~~~~~~lpd~~~i~l~~er~~~~E~LF~P~~~~~~~~~L~~~I~~sI~~~~~~dl~~r~~l~~NIvLtGG~S~ipGl~ 400 (465)
......|++||++.+.++.|||.+||+||+|+..+....+|+++|.++|++|+. |+ |+.+++||+||||+|++|||.
T Consensus 230 ~~~~~~~~lpd~~~i~~~~er~~~~E~lF~p~~~~~~~~~i~~~i~~~i~~~~~-~~--~~~l~~~Ivl~GG~s~~~gl~ 306 (371)
T cd00012 230 SLLEKTYELPDGRTIKVGNERFRAPEILFNPSLIGSEQVGISEAIYSSINKCDI-DL--RKDLYSNIVLSGGSTLFPGFG 306 (371)
T ss_pred CccceeEECCCCeEEEEChHHhhChHhcCChhhcCCCcCCHHHHHHHHHHhCCH-hH--HHHHHhCEEEeCCccCCcCHH
Confidence 123467999999999999999999999999999888899999999999999998 77 789999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhcCCCCCccccccHHHHHhcCCC
Q 012375 401 ERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGNLSTFPGAWCATKKQFRRKSRF 461 (465)
Q Consensus 401 eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilasl~tf~~~w~ITk~eY~e~G~~ 461 (465)
+||++||..+.|......+++...++|.+++|+||||+|++++|++.| |||+||+|+|.-
T Consensus 307 ~rl~~el~~~~~~~~~~~~~~~~~~~~~~~aw~G~si~as~~~~~~~~-itk~eY~E~G~~ 366 (371)
T cd00012 307 ERLQKELLKLAPPSKDTKVKVIAPPERKYSVWLGGSILASLSTFQQLW-ITKEEYEEHGPS 366 (371)
T ss_pred HHHHHHHHHhCCcccceEEEEccCCCccccEEeCchhhcCchhhhheE-eeHHHHhhhCch
Confidence 999999999998731223777778889999999999999999999988 999999999953
No 12
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=100.00 E-value=2.2e-56 Score=462.61 Aligned_cols=318 Identities=31% Similarity=0.612 Sum_probs=278.1
Q ss_pred ccEEEeCCcceEEEEEecCCCCCccccccccc------------------CC------------ccchH-------HHHH
Q 012375 126 GSVIIDGGSGYCKFGWSKYDCPSGRTATFLEF------------------GN------------IESPM-------YSRL 168 (465)
Q Consensus 126 ~~VVID~GS~~~K~Gfage~~P~~~~~s~~~~------------------G~------------~~~Pi-------~~~l 168 (465)
++||||+||++||+||||++.|+.++|+.++. |+ +++|+ |+.+
T Consensus 7 ~~iVIDnGS~~~k~Gfag~~~P~~V~ps~~~~~~~~~~~~~~~~~~~~~v~ne~~~~~~~~~~~~~~p~~~g~i~~W~~~ 86 (444)
T COG5277 7 PTIVIDNGSGTTKAGFAGNDTPTTVFPSIVGRRRDEDSVMEDTEEKDTYVGNEAQNDRDNSLLELRYPIENGIILNWDAM 86 (444)
T ss_pred CeEEEeCCCceEEeeecCCCCceeecccccccccccccccccccccccccCchhhhccCCccceeecccccCccCCcHHH
Confidence 55999999999999999999999999875421 11 23444 6899
Q ss_pred HHHHHHHHh---hcccCCCCCCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhh-ccCCeEEEeecchHHHHhcCCC--
Q 012375 169 RHFFATIYS---RMQVKPSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-LNVPAVCAINQATLALYAAKRT-- 242 (465)
Q Consensus 169 ~~~~~~~~~---~L~v~~~~~pVll~ep~~~~~~~~~~~~~R~~~~e~l~e~lFE-~~vpav~~~~~~vlalya~g~~-- 242 (465)
+.+|++.|. .+...+.+||++++||+.++ ..+|+ .+.+++|| +++|++++..+++|++|+.|..
T Consensus 87 e~~w~~~~~~~~~~~~~~~~~pllltep~~n~------~~~re----~~~e~~fE~~~vp~~~~~~~~~l~~ya~g~~~~ 156 (444)
T COG5277 87 EQIWDYTFFNKGDLLPSPEEHPLLLTEPPLNP------PSNRE----KITELLFETLNVPALYLAIQAVLSLYASGSSDE 156 (444)
T ss_pred HHHHHHhhcchhhccCCCcCCceEEeccCCCc------HHHHH----HHHHHHHHhcCCcceEeeHHHHHHHHhcCCCCC
Confidence 999998774 47788999999999999875 56664 56777777 9999999999999999999999
Q ss_pred ceEEEeecCceeEEEEEeeCeeeccccEEEEeccHHHHHHHHHHHHHh-----cCCCCCc------HHHHHHHHHhcc--
Q 012375 243 SGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQ-----NNINFGS------LYTVRTLKEKLC-- 309 (465)
Q Consensus 243 tglVVDiG~~~T~v~PV~dG~vl~~~~~~~~~iGG~~lt~~L~~lL~~-----~~~~~~~------~~~v~~iKe~~c-- 309 (465)
+|+|||+|++.|+|+||+||.++.+ +++++++||+++|.+|+++|.. ++..+.+ .++++.+|+++|
T Consensus 157 ~g~ViD~G~~~t~v~PV~DG~~l~~-a~~ri~~gG~~it~~l~~lL~~~~~~~~~~~l~~e~~~~~~ei~~~ik~e~~~~ 235 (444)
T COG5277 157 TGLVIDSGDSVTHVIPVVDGIVLPK-AVKRIDIGGRDITDYLKKLLREKYPPSRGYNLKSELVEYSSEIVNEIKEEVCET 235 (444)
T ss_pred ceEEEEcCCCceeeEeeeccccccc-cceeeecCcHHHHHHHHHHHhhcccccCCcccccccccccHHHHHHHHHhhccc
Confidence 9999999999999999999999999 8999999999999999999999 5555443 678999999999
Q ss_pred -----ccccchHHHhhc---------------------cccceEEecCCcEEEecce-ecccccccccCC--cCCcccCC
Q 012375 310 -----YVAADYKAELSK---------------------DTQASLEIAGEGWFTLSKE-RFQTGEILFQPR--MADVRTMG 360 (465)
Q Consensus 310 -----~v~~d~~~e~~~---------------------~~~~~~~lpd~~~i~l~~e-r~~~~E~LF~P~--~~~~~~~~ 360 (465)
|+..+.+++... ....++++||++.+.++.| ||.+||.||.|. ..+.+..+
T Consensus 236 ~~~~~y~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~e~rf~~pE~lF~pe~~~~~l~~~~ 315 (444)
T COG5277 236 DDESAYVSLDAEEEFEEEEEKPAEKSTESTFQLSKETSIAKESKELPDGEEIEFGNEERFKAPEILFKPELPISGLEEAG 315 (444)
T ss_pred cccccchhhcchHHHHHHhhhhhhhcccccccccchhccccccccCCCCceEeechhhhhhcchhhcCCccccccccccc
Confidence 888765543221 0134678999999999999 999999999999 76666555
Q ss_pred ---------------------------HHHHHHHHHhhcCCCCccccccccCceEEecCCCCccchHHHHHHHHHhcCCC
Q 012375 361 ---------------------------LDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGLAERLEKELRGLLPS 413 (465)
Q Consensus 361 ---------------------------L~~~I~~sI~~~~~~dl~~r~~l~~NIvLtGG~S~ipGl~eRL~~EL~~l~p~ 413 (465)
|++++.++|..|+. |+ |+.|++|||||||+|++|||.+||++||+.+.|.
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~gl~e~v~~si~~~~~-~~--r~~l~~nivitGGts~~pg~~~Rl~~el~~~~p~ 392 (444)
T COG5277 316 KIDESKQELVAENYEISPTNLGNDIAGLPELVYQSIQICDE-DV--RKSLYSNIVLTGGTSKIPGFAERLQKELTSLAPS 392 (444)
T ss_pred cchhhhhhhhhhccccccccccccccchHHHHHHHHHhccH-HH--HHHHhhCEEEecCccCCCCHHHHHHHHHHhhcCC
Confidence 99999999999997 76 7999999999999999999999999999999998
Q ss_pred CCCCceEEeCCCCCcchhhhhhHHhhcCCCCCccccccHHHHHhcCC
Q 012375 414 SISNGIRVIPPPYGADTAWFGAKLVGNLSTFPGAWCATKKQFRRKSR 460 (465)
Q Consensus 414 ~~~~~v~v~~~~~~~~~aW~Ggsilasl~tf~~~w~ITk~eY~e~G~ 460 (465)
... ++|..+++|.+.+|+||||+|++.+|+++| |||+||+|.|.
T Consensus 393 ~~~--v~v~~~~~~~~~~W~GaSila~~~~~~~~~-itk~eY~e~G~ 436 (444)
T COG5277 393 IWK--VSVIPPPDPSLDAWLGASILASLETFQQLW-ITKEEYEEHGP 436 (444)
T ss_pred CCc--eeeecCCchhhccccchhhhccccchhheE-eeHHHhhhhhh
Confidence 654 999999999999999999999999999999 99999999994
No 13
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton]
Probab=100.00 E-value=1.1e-54 Score=415.52 Aligned_cols=318 Identities=22% Similarity=0.423 Sum_probs=272.5
Q ss_pred CccEEEeCCcceEEEEEecCCCCCccccccc---------ccCC------------ccchH-------HHHHHHHHHHHH
Q 012375 125 PGSVIIDGGSGYCKFGWSKYDCPSGRTATFL---------EFGN------------IESPM-------YSRLRHFFATIY 176 (465)
Q Consensus 125 ~~~VVID~GS~~~K~Gfage~~P~~~~~s~~---------~~G~------------~~~Pi-------~~~l~~~~~~~~ 176 (465)
+++||+|+|++++|+|+|+++.|..+..... ..|| +++|. |+....+|+++|
T Consensus 3 ~~tiVlDNGay~~KiG~s~~~~p~~vpNcl~kaK~~~rr~f~~nei~ec~D~ssL~y~rp~erGyLvnW~tq~~vWDy~f 82 (400)
T KOG0680|consen 3 TTTIVLDNGAYNIKIGPSTNKKPFVVPNCLAKAKFGRRRSFLANEIDECKDISSLFYRRPHERGYLVNWDTQSQVWDYCF 82 (400)
T ss_pred CceEEEcCCceeEEeccCCCCCceeccchhhhcccccchhhhhhhhhhccCccceEEeehhhcceeEeehhHHHHHHHHh
Confidence 5799999999999999999998876543321 1121 23444 567788999999
Q ss_pred hhcc--cCCCCCCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhh-ccCCeEEEeecchHHHHhc---C--------CC
Q 012375 177 SRMQ--VKPSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-LNVPAVCAINQATLALYAA---K--------RT 242 (465)
Q Consensus 177 ~~L~--v~~~~~pVll~ep~~~~~~~~~~~~~R~~~~e~l~e~lFE-~~vpav~~~~~~vlalya~---g--------~~ 242 (465)
...+ ++-.++.+++++|.++- . .+-+...|++|| |++.+++=...+.++++-. + ..
T Consensus 83 ~~~~~~~~~~~~~ivlTep~~~~------p----si~~~t~eilFEey~fd~v~kttaa~lva~~~~~~~ne~~tt~~~~ 152 (400)
T KOG0680|consen 83 GNPGFDVEGKDHNIVLTEPCMTF------P----SIQEHTDEILFEEYQFDAVLKTTAAVLVAFTKYVRNNEDSTTTSSE 152 (400)
T ss_pred cCCCcCcccCcceEEEecccccc------c----chhhhHHHHHHHHhccceEeecCHHHhcchhhhccCCccccccccc
Confidence 6544 77789999999998874 1 234567788888 9999999999888888762 2 12
Q ss_pred ceEEEeecCceeEEEEEeeCeeeccccEEEEeccHHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHhccccccchHHHhhc
Q 012375 243 SGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFG-SLYTVRTLKEKLCYVAADYKAELSK 321 (465)
Q Consensus 243 tglVVDiG~~~T~v~PV~dG~vl~~~~~~~~~iGG~~lt~~L~~lL~~~~~~~~-~~~~v~~iKe~~c~v~~d~~~e~~~ 321 (465)
.++|||.|++.|+|+|+.+|.+..+ +++++++||+.||++|++.+..++.+.. ..+++++|||.+|||+.||.+.+..
T Consensus 153 c~lVIDsGysfThIip~v~g~~~~q-aV~RiDvGGK~LTn~LKE~iSyR~lNvmdET~vVNeiKEdvcfVSqnF~~~m~~ 231 (400)
T KOG0680|consen 153 CCLVIDSGYSFTHIIPVVKGIPYYQ-AVKRIDVGGKALTNLLKETISYRHLNVMDETYVVNEIKEDVCFVSQNFKEDMDI 231 (400)
T ss_pred eEEEEeCCCceEEEehhhcCcchhh-ceEEeecchHHHHHHHHHHhhhhhhcccchhhhhhhhhhheEEechhhHHHHHH
Confidence 5899999999999999999999999 8999999999999999999999888765 4689999999999999999876642
Q ss_pred c--------ccceEEecC-------------------CcEEEecceecccccccccCCcCCcccCCHHHHHHHHHhhcCC
Q 012375 322 D--------TQASLEIAG-------------------EGWFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHY 374 (465)
Q Consensus 322 ~--------~~~~~~lpd-------------------~~~i~l~~er~~~~E~LF~P~~~~~~~~~L~~~I~~sI~~~~~ 374 (465)
. ....|.||| .+.+.+++|||.+||+||+|++++++++||+++|.+||..||.
T Consensus 232 ~~~k~~~~~~~i~YvLPDF~T~k~Gyvr~~~vk~~~d~qii~L~nErF~IPEilF~Psdi~I~q~GIpEAV~esl~~~Pe 311 (400)
T KOG0680|consen 232 AKTKFQENKVMIDYVLPDFSTSKRGYVRNEDVKLPEDEQIITLTNERFTIPEILFSPSDIGIQQPGIPEAVLESLSMLPE 311 (400)
T ss_pred HhhccccceeEEEEecCCcccccceeEecCCCCCCCCcceeeecccccccchhhcChhhcCcccCCchHHHHHHHHhCHH
Confidence 1 113455554 4578899999999999999999999999999999999999997
Q ss_pred CCccccccccCceEEecCCCCccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhcCCCCCccccccHHH
Q 012375 375 AELSGDDAWFKTVILTGGSACLPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGNLSTFPGAWCATKKQ 454 (465)
Q Consensus 375 ~dl~~r~~l~~NIvLtGG~S~ipGl~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilasl~tf~~~w~ITk~e 454 (465)
++ |+.|+.|||++||++++|||.+||..||+.++|.++. ++|..|.+|..-+|.||+-++.+.+|...| |||+|
T Consensus 312 -~~--~p~l~~NIv~iGGn~~fPgF~~RL~~Elr~l~P~d~~--v~V~~p~dp~~~~W~~g~~~~~~~~~~~~~-itR~d 385 (400)
T KOG0680|consen 312 -EV--RPLLLENIVCIGGNSNFPGFRQRLARELRSLLPADWE--VSVSVPEDPITFAWEGGSEFAKTDSFEKAV-ITRED 385 (400)
T ss_pred -HH--HHHHHhcEEEecCccCCcchHHHHHHHHHhhCCccce--EEEecCCCcceeeehhccccccCcchhcce-ecHhh
Confidence 66 7999999999999999999999999999999999986 999989999999999999999999999999 99999
Q ss_pred HHhcC
Q 012375 455 FRRKS 459 (465)
Q Consensus 455 Y~e~G 459 (465)
|+|+|
T Consensus 386 y~E~G 390 (400)
T KOG0680|consen 386 YEEHG 390 (400)
T ss_pred HhhcC
Confidence 99999
No 14
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=100.00 E-value=1.5e-45 Score=372.64 Aligned_cols=319 Identities=26% Similarity=0.446 Sum_probs=260.0
Q ss_pred CccEEEeCCcceEEEEEecCCCCCcccccccc-------------cCC-----------ccchH-------HHHHHHHHH
Q 012375 125 PGSVIIDGGSGYCKFGWSKYDCPSGRTATFLE-------------FGN-----------IESPM-------YSRLRHFFA 173 (465)
Q Consensus 125 ~~~VVID~GS~~~K~Gfage~~P~~~~~s~~~-------------~G~-----------~~~Pi-------~~~l~~~~~ 173 (465)
..|||||+||+.|||||+|+..|+.+++.++. +|| .++|+ |+.+|++++
T Consensus 23 ~~piVIDNGS~~~RaGw~ge~eP~lvFrNvl~r~Rdrk~~~s~t~vgnd~~~~~~~Rs~~rSPFd~nVvtNwel~E~ilD 102 (645)
T KOG0681|consen 23 TIPIVIDNGSYECRAGWAGEKEPRLVFRNVLTRPRDRKLGASVTLVGNDILNFQGVRSSPRSPFDRNVVTNWELMEQILD 102 (645)
T ss_pred CCcEEEeCCceeEeecccCCCCccchhhhhhccccccccccccccccchhhhhhhhhccCCCCCcCCccccHHHHHHHHH
Confidence 46899999999999999999999999987542 333 23454 789999999
Q ss_pred HHHhhcccCCC--CCCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhhccCCeEEEeecchHHHHhc-C---CCceEEE
Q 012375 174 TIYSRMQVKPS--TQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAA-K---RTSGIVV 247 (465)
Q Consensus 174 ~~~~~L~v~~~--~~pVll~ep~~~~~~~~~~~~~R~~~~e~l~e~lFE~~vpav~~~~~~vlalya~-g---~~tglVV 247 (465)
++|.+||++++ +||+++||+.++| ...|+++.|.|||+ ||+|+|.+.-+++.++|.. + ..+|+||
T Consensus 103 Y~F~~LG~~~~~idhPIilTE~laNP------~~~R~~m~elLFE~---YgvP~V~yGIDslfS~~hN~~~~~~~~~lii 173 (645)
T KOG0681|consen 103 YIFGKLGVDGQGIDHPIILTEALANP------VYSRSEMVELLFET---YGVPKVAYGIDSLFSFYHNYGKSSNKSGLII 173 (645)
T ss_pred HHHHhcCCCccCCCCCeeeehhccCh------HHHHHHHHHHHHHH---cCCcceeechhhHHHHhhccCcccCcceEEE
Confidence 99999999874 8999999999985 67887755544444 9999999999999999943 3 3479999
Q ss_pred eecCceeEEEEEeeCeeeccccEEEEeccHHHHHHHHHHHHHhcCCCCC---cHHHHHHHHHhccccccchHHHhhcc--
Q 012375 248 NIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFG---SLYTVRTLKEKLCYVAADYKAELSKD-- 322 (465)
Q Consensus 248 DiG~~~T~v~PV~dG~vl~~~~~~~~~iGG~~lt~~L~~lL~~~~~~~~---~~~~v~~iKe~~c~v~~d~~~e~~~~-- 322 (465)
++|++.|+|+||.||..+.. .++++++||.+...||.+||+.+.+.+. +....+.++..+||++.||..++.+.
T Consensus 174 s~g~~~T~vipvldG~~il~-~~kRiN~GG~qa~dYL~~Lmq~Kyp~~~~~~t~sk~E~l~~eHcyis~DY~eei~~~l~ 252 (645)
T KOG0681|consen 174 SMGHSATHVIPVLDGRLILK-DVKRINWGGYQAGDYLSRLMQLKYPFHLNAFTGSKAERLLHEHCYISPDYREEIIKILE 252 (645)
T ss_pred ecCCCcceeEEEecCchhhh-cceeeccCcchHHHHHHHHHhccCccchhhcCHHHHHHHhhhhceeCcchHHHHHHHhh
Confidence 99999999999999999887 8999999999999999999998765432 33455555666666655542110000
Q ss_pred --------------------------------------------------c-------------------cc--------
Q 012375 323 --------------------------------------------------T-------------------QA-------- 325 (465)
Q Consensus 323 --------------------------------------------------~-------------------~~-------- 325 (465)
. ..
T Consensus 253 ~d~~d~~~~~~qlP~~evl~~~e~~l~Ae~kqekRlq~~a~lkrv~k~~~re~~redeqql~~~~kaq~e~e~~~D~~q~ 332 (645)
T KOG0681|consen 253 MDYYDENRNYFQLPYTEVLAEVELALTAEKKQEKRLQEQAALKRVEKINARENRREDEQQLESYNKAQGEQESNLDLEQK 332 (645)
T ss_pred hhhhhccceEEecccccccchhhhhccHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHhhhchhcCccHhhh
Confidence 0 00
Q ss_pred --------------------------------------e-----------------------------------------
Q 012375 326 --------------------------------------S----------------------------------------- 326 (465)
Q Consensus 326 --------------------------------------~----------------------------------------- 326 (465)
.
T Consensus 333 ~~ll~v~~eL~~d~lk~k~~qr~lkas~dar~rar~eke~Er~~k~~~~r~~~~~swl~e~r~k~~~ller~~~kk~lk~ 412 (645)
T KOG0681|consen 333 FPLLNVPAELDEDQLKEKKKQRILKASTDARLRARVEKELERLNKLEEEREENLISWLEELREKLEKLLERISQKKRLKQ 412 (645)
T ss_pred chhhcchhhhCHHHHHHHHHHHHHHhhhhhhccccccchHHHhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0
Q ss_pred ---------------------E----------EecC--------------------------------------------
Q 012375 327 ---------------------L----------EIAG-------------------------------------------- 331 (465)
Q Consensus 327 ---------------------~----------~lpd-------------------------------------------- 331 (465)
+ .-||
T Consensus 413 e~~~r~s~~Sq~rmr~~~~La~~~~~rrk~~~~t~D~fg~~Dedw~vYe~lee~~~~~~~dl~~l~~~L~e~Dp~F~~~~ 492 (645)
T KOG0681|consen 413 ELKDRKSHASQLRMRALARLAYEQVVRRKRKEATPDNFGARDEDWDVYEDLEEENKSILEDLKSLNHELLEFDPHFTQYV 492 (645)
T ss_pred hhhhhhhhhhHhhhHHHHhhhHHHHHHHhcccCCccccccchhhHHHHHHhhhhhhhHHHHHHHHHHHHHhhCccccccc
Confidence 0 0000
Q ss_pred -C----------------cEEEecceecccccccccCCcCCcccCCHHHHHHHHHhhcCCCCccccccccCceEEecCCC
Q 012375 332 -E----------------GWFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSA 394 (465)
Q Consensus 332 -~----------------~~i~l~~er~~~~E~LF~P~~~~~~~~~L~~~I~~sI~~~~~~dl~~r~~l~~NIvLtGG~S 394 (465)
+ ..+.++-||+++||++|+|+++|.++.||.+++..++++.|. |- +..|.+||+||||+|
T Consensus 493 ~~~~d~~~~~~p~~~~e~~qlh~nVEriRvPEIiFqPsiiG~dQaGl~Ei~~~il~r~p~-~e--q~~lV~nVllTGG~s 569 (645)
T KOG0681|consen 493 EGTTDPRNGVLPGFTAEDYQLHLNVERIRVPEIIFQPSIIGIDQAGLAEIMDTILRRYPH-DE--QEKLVSNVLLTGGCS 569 (645)
T ss_pred ccccCcccCcchhHHHhhhhhhhcceeeccceeeeccccccchhhhHHHHHHHHHHhCch-hh--hHhhhhheEeecccc
Confidence 0 012357789999999999999999999999999999999997 64 467899999999999
Q ss_pred CccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhcCCCCCccccccHHHHHhcC
Q 012375 395 CLPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGNLSTFPGAWCATKKQFRRKS 459 (465)
Q Consensus 395 ~ipGl~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilasl~tf~~~w~ITk~eY~e~G 459 (465)
++||+.+||.+||..+.|...+ |.|+...+|...||.||+.+|.-.+|..-| +||+||+|.|
T Consensus 570 ~~pGmkeRi~kElt~mrP~gS~--i~V~rasdP~LDAW~GA~~~a~n~~f~~~~-~Tr~dy~E~G 631 (645)
T KOG0681|consen 570 QLPGMKERIKKELTSMRPVGSS--INVVRASDPVLDAWRGASAWAANPTFTLTQ-ITRKDYEEKG 631 (645)
T ss_pred cCcCHHHHHHHHhheecccCCc--eEEEecCCcchhhhhhhHHhhcCcccchhh-hhHHhhhhhh
Confidence 9999999999999999998765 999999999999999999999999999999 9999999999
No 15
>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton]
Probab=100.00 E-value=2.8e-45 Score=351.35 Aligned_cols=319 Identities=25% Similarity=0.504 Sum_probs=264.0
Q ss_pred ccEEEeCCcceEEEEEecCCCCCccccccccc-------------------------CC---------ccchH-------
Q 012375 126 GSVIIDGGSGYCKFGWSKYDCPSGRTATFLEF-------------------------GN---------IESPM------- 164 (465)
Q Consensus 126 ~~VVID~GS~~~K~Gfage~~P~~~~~s~~~~-------------------------G~---------~~~Pi------- 164 (465)
.++|+|+|++++|.||||...|++++|+++.. |+ +.+|+
T Consensus 5 ~p~V~d~Gtgytklg~agn~~p~~i~p~~ia~~~~~~~s~~~~~~~~~~~~dldf~ig~eal~~~~ysl~ypiRhg~ve~ 84 (415)
T KOG0678|consen 5 LPCVIDNGTGYTKLGYAGNTEPQFIIPTAIAVKESAAVSSKATRRVKRGTEDLDFFIGDEALDATTYSLKYPIRHGQVED 84 (415)
T ss_pred CceeeccCcceeeeeccccCCcccccceeEEeccccccccchhhhhhccccccceecccHHHhhcccccccceecccccc
Confidence 34999999999999999999999999886532 21 34565
Q ss_pred HHHHHHHHH-HHHhhcccCCCCCCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhh-ccCCeEEEeecchHHHHhcC--
Q 012375 165 YSRLRHFFA-TIYSRMQVKPSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-LNVPAVCAINQATLALYAAK-- 240 (465)
Q Consensus 165 ~~~l~~~~~-~~~~~L~v~~~~~pVll~ep~~~~~~~~~~~~~R~~~~e~l~e~lFE-~~vpav~~~~~~vlalya~g-- 240 (465)
||.|+++|. .+|++|++.|++|-.+|++|+.++ .++|+ ...|+||| ||+|.+++..++++||-+.-
T Consensus 85 wd~mer~~~q~ifkylr~ePedh~fLlteppln~------penre----ytaeImfEsfnvpglyiAVqavLALaaswts 154 (415)
T KOG0678|consen 85 WDLMERFWEQCIFKYLRAEPEDHYFLLTEPPLNQ------PENRE----YTAEIMFESFNVPGLYIAVQAVLALAASWTS 154 (415)
T ss_pred HHHHHHHHhhhhhhhhcCCcccceEEecCCCCCC------chhhH----HHHHhhhhhccCchHHHHHHHHHHHHHHHHH
Confidence 678999996 467999999999999999999875 56664 56677777 99999999999999988763
Q ss_pred ------CCceEEEeecCceeEEEEEeeCeeeccccEEEEeccHHHHHHHHHHHHHhcCCCCC---cHHHHHHHHHhcccc
Q 012375 241 ------RTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFG---SLYTVRTLKEKLCYV 311 (465)
Q Consensus 241 ------~~tglVVDiG~~~T~v~PV~dG~vl~~~~~~~~~iGG~~lt~~L~~lL~~~~~~~~---~~~~v~~iKe~~c~v 311 (465)
.-||+|||.|.+.|+|+||.||+++-+ +++.++++|+++|.+++.+|+.++...+ +.++++.+||++||+
T Consensus 155 ~~v~er~ltG~VidsGdgvThvipvaEgyVigS-cik~iPiagrdiT~fiQ~llRer~~~iP~e~sl~tak~iKe~ycy~ 233 (415)
T KOG0678|consen 155 RQVGERFLTGIVIDSGDGVTHVIPVAEGYVIGS-CIKHIPIAGRDITYFIQQLLREREVGIPPEQSLETAKAIKEKYCYT 233 (415)
T ss_pred hhhhhheeeeEEEecCCCeeEEEEeecceEEee-eeccccccCCchhHHHHHHhhCCCCCCChHHhhhhhHHHHhhhccc
Confidence 358999999999999999999999998 7999999999999999999998877554 468899999999999
Q ss_pred ccchHHHhhcccc---------ceEEecCC--cEEEecceecccccccccCCcCCcc-cCCHHHHHHHHHhhcCCCCccc
Q 012375 312 AADYKAELSKDTQ---------ASLEIAGE--GWFTLSKERFQTGEILFQPRMADVR-TMGLDQAVALCMDHCHYAELSG 379 (465)
Q Consensus 312 ~~d~~~e~~~~~~---------~~~~lpd~--~~i~l~~er~~~~E~LF~P~~~~~~-~~~L~~~I~~sI~~~~~~dl~~ 379 (465)
.+|+..|..+... ...++-.+ ..++++.|||..||++|+|.....+ ...|++++..+|++|++ |+
T Consensus 234 cPdivkef~k~d~ep~K~ikq~~~~~~i~~~~~~vDvgyerFlgpEiff~Pe~a~~d~~~~~~~~vd~~Iq~~pI-dv-- 310 (415)
T KOG0678|consen 234 CPDIVKEFAKYDREPAKWIKQYTGINVITGKKFVVDVGYERFLGPEIFFHPEFANPDFLTPLSEVVDWVIQHCPI-DV-- 310 (415)
T ss_pred CcHHHHHHHHhccCHHHHHHHHhccchhcCCceeecccHHhhcChhhhcCccccCCccCcchHHHhhhhhhhCCc-cc--
Confidence 9998877654211 11122223 2467789999999999999987644 45799999999999999 87
Q ss_pred cccccCceEEecCCCCccchHHHHHHHHHhcCCCC---------CC---CceEEeCCCCCcchhhhhhHHhhcCCCCCcc
Q 012375 380 DDAWFKTVILTGGSACLPGLAERLEKELRGLLPSS---------IS---NGIRVIPPPYGADTAWFGAKLVGNLSTFPGA 447 (465)
Q Consensus 380 r~~l~~NIvLtGG~S~ipGl~eRL~~EL~~l~p~~---------~~---~~v~v~~~~~~~~~aW~Ggsilasl~tf~~~ 447 (465)
|+.||+||++.||.+++.+|..|++++++.+.... .+ ..|+++...-.++++|.|||+|+|.+.|.+.
T Consensus 311 rr~ly~nivlsggst~fk~fgr~lqrD~kr~vd~rl~~s~~lsg~k~~~vdvqvish~~qr~avwfggs~lastpef~~~ 390 (415)
T KOG0678|consen 311 RRPLYKNIVLSGGSTMFKDFGRRLQRDLKRLVDTRLAESEGLSGIKSKPVDVQVLSHLLQRTAVWFGGSKLASTPEFVPA 390 (415)
T ss_pred chhhhhHHhhccchHHHHHhhhhccHHHHHHHHHHHHHhcccccCCCCCceeehhhhhhhhcceeccCccccCCcccccc
Confidence 79999999999999999999999999987764211 01 1255665556679999999999999999876
Q ss_pred ccccHHHHHhcC
Q 012375 448 WCATKKQFRRKS 459 (465)
Q Consensus 448 w~ITk~eY~e~G 459 (465)
|-||++|+|+|
T Consensus 391 -~~tk~~yee~g 401 (415)
T KOG0678|consen 391 -CHTKEDYEEYG 401 (415)
T ss_pred -cCcchhhhhhC
Confidence 69999999999
No 16
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=100.00 E-value=4.1e-32 Score=273.54 Aligned_cols=280 Identities=21% Similarity=0.344 Sum_probs=211.4
Q ss_pred HHHHHHHHHH-hhcccCCC---CCCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhhccCCeEEEeecchHHHHhcCCC
Q 012375 167 RLRHFFATIY-SRMQVKPS---TQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKRT 242 (465)
Q Consensus 167 ~l~~~~~~~~-~~L~v~~~---~~pVll~ep~~~~~~~~~~~~~R~~~~e~l~e~lFE~~vpav~~~~~~vlalya~g~~ 242 (465)
.+..+|+|.+ ++|++.++ .+.+|++.|.. ..|..+.|.+.-+|+|++|.++.++.++++++||+|.+
T Consensus 205 dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~---------f~r~hveefl~ilL~eL~F~~~~v~QESlaatfGaGls 275 (618)
T KOG0797|consen 205 DLTAILDYALLEKLHIPHKKLFQYHAVLVVPDT---------FDRRHVEEFLTILLGELGFNSAVVHQESLAATFGAGLS 275 (618)
T ss_pred HHHHHHHHHHHHhcCCChhHhcceeEEEEecch---------hhHHHHHHHHHHHHHHhccceEEEEhhhhHHHhcCCcc
Confidence 4567787765 57998764 78899988863 56777888888888889999999999999999999999
Q ss_pred ceEEEeecCceeEEEEEeeCeeeccccEEEEeccHHHHHHHHHHHHHhcCCCCC--------cHHHHHHHHHhccccccc
Q 012375 243 SGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFG--------SLYTVRTLKEKLCYVAAD 314 (465)
Q Consensus 243 tglVVDiG~~~T~v~PV~dG~vl~~~~~~~~~iGG~~lt~~L~~lL~~~~~~~~--------~~~~v~~iKe~~c~v~~d 314 (465)
++||||||++.|+|+||-||.++++ +...+++||.++++.+..+|++.+..+. ++..++++||++|.+..+
T Consensus 276 s~CVVdiGAQkTsIaCVEdGvs~~n-tri~L~YGGdDitr~f~~ll~rs~FPy~d~~v~~~~d~lLl~~LKe~Fc~l~~a 354 (618)
T KOG0797|consen 276 SACVVDIGAQKTSIACVEDGVSLPN-TRIILPYGGDDITRCFLWLLRRSGFPYQDCDVLAPIDWLLLNQLKEKFCHLRAA 354 (618)
T ss_pred ceeEEEccCcceeEEEeecCccccC-ceEEeccCCchHHHHHHHHHHhcCCCcccccccccccHHHHHHHHHHhccccHh
Confidence 9999999999999999999999999 8889999999999999999999887653 356899999999987643
Q ss_pred hHHHhhccccceEEecCCc----EEEecceecccccccccCCcCCc----------------------------------
Q 012375 315 YKAELSKDTQASLEIAGEG----WFTLSKERFQTGEILFQPRMADV---------------------------------- 356 (465)
Q Consensus 315 ~~~e~~~~~~~~~~lpd~~----~i~l~~er~~~~E~LF~P~~~~~---------------------------------- 356 (465)
.-+-.. ..-.+.-||+. .+.+++|...+|-.||.|.++++
T Consensus 355 ~~~vQ~--~~F~~R~pn~~~~kytfk~~DE~mlAPlaLF~P~lf~~~~tk~~~~q~~~q~d~~d~fd~e~~~~~~~~~~~ 432 (618)
T KOG0797|consen 355 ELGVQL--TVFSYREPNPPTLKYTFKLGDEVMLAPLALFYPNLFVIEGTKSHKNQSFPQPDREDLFDYEYLLEDTWKQDF 432 (618)
T ss_pred hhhhhh--hhhhccCCCCcceeeeeeccchhhccchhhhhhhhhhccccccccccccCCCCcccccchhhhhhhcccccc
Confidence 211000 00001111110 11222222222222222221100
Q ss_pred ---------------------------------------------------------------------ccCCHHHHHHH
Q 012375 357 ---------------------------------------------------------------------RTMGLDQAVAL 367 (465)
Q Consensus 357 ---------------------------------------------------------------------~~~~L~~~I~~ 367 (465)
-..++.+.|..
T Consensus 433 ~~~g~~~l~ls~~i~~~~~~~~~l~~~~d~~Elg~t~~d~f~p~~~s~~gslaa~~i~n~~~~~~~f~gl~l~ldqsii~ 512 (618)
T KOG0797|consen 433 GGGGNDGLQLSDSIGFSNRIRDQLPEKPDKEELGVTLKDNFAPLEKSIVGSLAAASIMNKKGLYESFYGLLLALDQSIIS 512 (618)
T ss_pred cccccccccccccccccccccccccccccchhhccccccccCCchhhhhhhhhhhhhhcccceeccccchhhccchhHHH
Confidence 01145566888
Q ss_pred HHhhcCCCCccccccccCceEEecCCCCccchHHHHHHHHHhcCCCC--CCCceEEeCCC---CCcchhhhhhHHhhcCC
Q 012375 368 CMDHCHYAELSGDDAWFKTVILTGGSACLPGLAERLEKELRGLLPSS--ISNGIRVIPPP---YGADTAWFGAKLVGNLS 442 (465)
Q Consensus 368 sI~~~~~~dl~~r~~l~~NIvLtGG~S~ipGl~eRL~~EL~~l~p~~--~~~~v~v~~~~---~~~~~aW~Ggsilasl~ 442 (465)
+|..|-. | .+++.|++.|.++||+.++||+.+-|++.+....|+. ....|.|+.+| ++++-+|.||+|+|.+.
T Consensus 513 sid~~~s-d-d~~rKl~sSil~Vgga~~~~g~~~~LEeRi~n~~pp~~~~I~~VsVip~prdMdp~~VaWKGaaIla~l~ 590 (618)
T KOG0797|consen 513 SIDSALS-D-DTKRKLFSSILLVGGAGLFPGLVAALEERILNAIPPGREAIDTVSVIPPPRDMDPQFVAWKGAAILAILD 590 (618)
T ss_pred hhhhhcc-c-hhhHhhhhHHHhhcccccchhHHHHHHHHHhccCCccccccCceeecCCCcCCCchheEecchhhhhHHH
Confidence 8888876 3 3478999999999999999999999999998877762 22468888876 78999999999999999
Q ss_pred CCCccccccHHHHHhcCCC
Q 012375 443 TFPGAWCATKKQFRRKSRF 461 (465)
Q Consensus 443 tf~~~w~ITk~eY~e~G~~ 461 (465)
.-.+.| |++.||..+|+.
T Consensus 591 ~~~ELw-I~~~dW~~~G~R 608 (618)
T KOG0797|consen 591 FVRELW-IENSDWQVHGVR 608 (618)
T ss_pred HHHHHh-eechhHhhhhhh
Confidence 999999 999999999943
No 17
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=99.96 E-value=1.3e-28 Score=249.76 Aligned_cols=274 Identities=17% Similarity=0.168 Sum_probs=201.8
Q ss_pred EEEeCCcceEEEEEecCCCCCccccccc----------ccCC--------------ccchH-------HHHHHHHHHHHH
Q 012375 128 VIIDGGSGYCKFGWSKYDCPSGRTATFL----------EFGN--------------IESPM-------YSRLRHFFATIY 176 (465)
Q Consensus 128 VVID~GS~~~K~Gfage~~P~~~~~s~~----------~~G~--------------~~~Pi-------~~~l~~~~~~~~ 176 (465)
|+||+||.++|+|++|++ +....|+++ .+|+ +.+|+ |+.++.+|++++
T Consensus 11 vgiDlGt~~t~i~~~~~~-~~~~~ps~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~~~~pi~~G~i~d~~~~e~ll~~~~ 89 (335)
T PRK13930 11 IGIDLGTANTLVYVKGKG-IVLNEPSVVAIDTKTGKVLAVGEEAKEMLGRTPGNIEAIRPLKDGVIADFEATEAMLRYFI 89 (335)
T ss_pred eEEEcCCCcEEEEECCCC-EEEecCCEEEEECCCCeEEEEcHHHHHhhhcCCCCeEEeecCCCCeEcCHHHHHHHHHHHH
Confidence 999999999999999875 233344433 2342 23565 567899999998
Q ss_pred hhccc-CC-CCCCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhh-ccCCeEEEeecchHHHHhcCC-----CceEEEe
Q 012375 177 SRMQV-KP-STQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-LNVPAVCAINQATLALYAAKR-----TSGIVVN 248 (465)
Q Consensus 177 ~~L~v-~~-~~~pVll~ep~~~~~~~~~~~~~R~~~~e~l~e~lFE-~~vpav~~~~~~vlalya~g~-----~tglVVD 248 (465)
+++.. .+ ..++++++.|...+ ...|+.+ .+ +|| +|++.++++++|++|+|++|. ++++|||
T Consensus 90 ~~~~~~~~~~~~~vvit~P~~~~------~~~r~~~----~~-~~e~~g~~~~~lv~ep~AAa~a~g~~~~~~~~~lVvD 158 (335)
T PRK13930 90 KKARGRRFFRKPRIVICVPSGIT------EVERRAV----RE-AAEHAGAREVYLIEEPMAAAIGAGLPVTEPVGNMVVD 158 (335)
T ss_pred HHHhhcccCCCCcEEEEECCCCC------HHHHHHH----HH-HHHHcCCCeEEecccHHHHHHhcCCCcCCCCceEEEE
Confidence 76543 23 36788888887653 4444432 22 455 999999999999999999987 5689999
Q ss_pred ecCceeEEEEEeeCeeeccccEEEEeccHHHHHHHHHHHHHhcC-CCCCcHHHHHHHHHhccccccchHHH-hhcc-ccc
Q 012375 249 IGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNN-INFGSLYTVRTLKEKLCYVAADYKAE-LSKD-TQA 325 (465)
Q Consensus 249 iG~~~T~v~PV~dG~vl~~~~~~~~~iGG~~lt~~L~~lL~~~~-~~~~~~~~v~~iKe~~c~v~~d~~~e-~~~~-~~~ 325 (465)
+|+++|++++|.+|.++.. ...++||+++|+.|.+++..+. .. .+.+.++++|+++|++..+.+.+ +... ...
T Consensus 159 iG~gttdvs~v~~g~~~~~---~~~~lGG~~id~~l~~~l~~~~~~~-~~~~~ae~~K~~~~~~~~~~~~~~~~~~~~~~ 234 (335)
T PRK13930 159 IGGGTTEVAVISLGGIVYS---ESIRVAGDEMDEAIVQYVRRKYNLL-IGERTAEEIKIEIGSAYPLDEEESMEVRGRDL 234 (335)
T ss_pred eCCCeEEEEEEEeCCEEee---cCcCchhHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHhhcCcCCCCCceEEEECccC
Confidence 9999999999999998764 5689999999999999987652 22 24578999999999988764322 1000 011
Q ss_pred eEEecCCcEEEecceecccccccccCCcCCcccCCHHHHHHHHHhhcCCCCccccccccCc-eEEecCCCCccchHHHHH
Q 012375 326 SLEIAGEGWFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKT-VILTGGSACLPGLAERLE 404 (465)
Q Consensus 326 ~~~lpd~~~i~l~~er~~~~E~LF~P~~~~~~~~~L~~~I~~sI~~~~~~dl~~r~~l~~N-IvLtGG~S~ipGl~eRL~ 404 (465)
.+.+|+ .+.++.+++ .|++|.|. .++.+.|.++|++|+. ++ +..++.| |+|+||+|++|||.+||+
T Consensus 235 ~~~~~~--~~~i~~~~~--~e~i~~~~------~~i~~~i~~~l~~~~~-~~--~~~~~~~~IvL~GG~s~ipg~~~~l~ 301 (335)
T PRK13930 235 VTGLPK--TIEISSEEV--REALAEPL------QQIVEAVKSVLEKTPP-EL--AADIIDRGIVLTGGGALLRGLDKLLS 301 (335)
T ss_pred CCCCCe--eEEECHHHH--HHHHHHHH------HHHHHHHHHHHHhCCH-HH--hhHHHhCCEEEECchhcchhHHHHHH
Confidence 122332 455666655 48888763 3689999999999987 65 5678887 999999999999999999
Q ss_pred HHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhc
Q 012375 405 KELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGN 440 (465)
Q Consensus 405 ~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilas 440 (465)
+++.. ++++ ..+|..+.=.||++++.
T Consensus 302 ~~~~~--------~v~~--~~~p~~ava~Ga~~~~~ 327 (335)
T PRK13930 302 EETGL--------PVHI--AEDPLTCVARGTGKALE 327 (335)
T ss_pred HHHCC--------Ccee--cCCHHHHHHHHHHHHHh
Confidence 99851 1333 33456788889999874
No 18
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=99.95 E-value=2.6e-27 Score=240.24 Aligned_cols=273 Identities=19% Similarity=0.182 Sum_probs=194.4
Q ss_pred cEEEeCCcceEEEEEecCCCCCccccccc----------ccCC--------------ccchH-------HHHHHHHHHHH
Q 012375 127 SVIIDGGSGYCKFGWSKYDCPSGRTATFL----------EFGN--------------IESPM-------YSRLRHFFATI 175 (465)
Q Consensus 127 ~VVID~GS~~~K~Gfage~~P~~~~~s~~----------~~G~--------------~~~Pi-------~~~l~~~~~~~ 175 (465)
.|+||+||.++|+|++|++. ....|+++ .+|+ +.+|+ |+.++.+|+++
T Consensus 7 ~igIDlGt~~~~i~~~~~~~-~~~~ps~v~~~~~~~~~~~vG~~a~~~~~~~~~~~~~~~pi~~G~i~d~~~~~~ll~~~ 85 (334)
T PRK13927 7 DLGIDLGTANTLVYVKGKGI-VLNEPSVVAIRTDTKKVLAVGEEAKQMLGRTPGNIVAIRPMKDGVIADFDVTEKMLKYF 85 (334)
T ss_pred eeEEEcCcceEEEEECCCcE-EEecCCEEEEECCCCeEEEecHHHHHHhhcCCCCEEEEecCCCCeecCHHHHHHHHHHH
Confidence 49999999999999999864 33344433 2332 23565 46788899988
Q ss_pred Hhh-cccCCCCC-CeEEEecCCCCCCccchHHhHHHHHHHHHHHHhh-ccCCeEEEeecchHHHHhcCC-----CceEEE
Q 012375 176 YSR-MQVKPSTQ-PIVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-LNVPAVCAINQATLALYAAKR-----TSGIVV 247 (465)
Q Consensus 176 ~~~-L~v~~~~~-pVll~ep~~~~~~~~~~~~~R~~~~e~l~e~lFE-~~vpav~~~~~~vlalya~g~-----~tglVV 247 (465)
+.+ ++. +.++ .++++.|... ...+++. ++.+|| ++++.+.++++|++|+|++|. ++++||
T Consensus 86 ~~~~~~~-~~~~~~~vi~vP~~~-------~~~~r~~----~~~a~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lvv 153 (334)
T PRK13927 86 IKKVHKN-FRPSPRVVICVPSGI-------TEVERRA----VRESALGAGAREVYLIEEPMAAAIGAGLPVTEPTGSMVV 153 (334)
T ss_pred HHHHhhc-cCCCCcEEEEeCCCC-------CHHHHHH----HHHHHHHcCCCeeccCCChHHHHHHcCCcccCCCeEEEE
Confidence 754 455 5566 4666677543 2334343 444555 999999999999999999986 457999
Q ss_pred eecCceeEEEEE-eeCeeeccccEEEEeccHHHHHHHHHHHHHhc-CCCCCcHHHHHHHHHhccccccchHH-Hhhcc-c
Q 012375 248 NIGFQVTSVVPI-LHGKVMRKVGVEVMGLGALKLTGYLRLLMQQN-NINFGSLYTVRTLKEKLCYVAADYKA-ELSKD-T 323 (465)
Q Consensus 248 DiG~~~T~v~PV-~dG~vl~~~~~~~~~iGG~~lt~~L~~lL~~~-~~~~~~~~~v~~iKe~~c~v~~d~~~-e~~~~-~ 323 (465)
|+|+++|+++++ ++|.+... . .++||+++|+.|.+++.++ +.. .+...++++|+++|++..+.+. ++... .
T Consensus 154 DiGggttdvs~v~~~~~~~~~-~---~~lGG~~id~~l~~~l~~~~~~~-~~~~~ae~iK~~~~~~~~~~~~~~~~~~~~ 228 (334)
T PRK13927 154 DIGGGTTEVAVISLGGIVYSK-S---VRVGGDKFDEAIINYVRRNYNLL-IGERTAERIKIEIGSAYPGDEVLEMEVRGR 228 (334)
T ss_pred EeCCCeEEEEEEecCCeEeeC-C---cCChHHHHHHHHHHHHHHHhCcC-cCHHHHHHHHHHhhccCCCCCCceEEEeCc
Confidence 999999999999 67776554 2 5899999999999988754 222 2457899999999998754321 11000 0
Q ss_pred cceEEecCCcEEEecceecccccccccCCcCCcccCCHHHHHHHHHhhcCCCCccccccccC-ceEEecCCCCccchHHH
Q 012375 324 QASLEIAGEGWFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFK-TVILTGGSACLPGLAER 402 (465)
Q Consensus 324 ~~~~~lpd~~~i~l~~er~~~~E~LF~P~~~~~~~~~L~~~I~~sI~~~~~~dl~~r~~l~~-NIvLtGG~S~ipGl~eR 402 (465)
...+.+|+ .+.++.++| .|++|.|. .++.+.|.++|++|+. ++ +.+++. +|+||||+|++||+.+|
T Consensus 229 ~~~~~~~~--~~~i~~~~~--~e~i~~~~------~~i~~~i~~~l~~~~~-~~--~~~~~~~~IvL~GG~s~ipgl~~~ 295 (334)
T PRK13927 229 DLVTGLPK--TITISSNEI--REALQEPL------SAIVEAVKVALEQTPP-EL--AADIVDRGIVLTGGGALLRGLDKL 295 (334)
T ss_pred ccCCCCCe--EEEECHHHH--HHHHHHHH------HHHHHHHHHHHHHCCc-hh--hhhhhcCCEEEECchhhhhHHHHH
Confidence 01122222 456666666 48888763 4699999999999987 66 467776 59999999999999999
Q ss_pred HHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhc
Q 012375 403 LEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGN 440 (465)
Q Consensus 403 L~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilas 440 (465)
|++++.. ++++. .+|..++=.||++++.
T Consensus 296 l~~~~~~--------~v~~~--~~P~~ava~Ga~~~~~ 323 (334)
T PRK13927 296 LSEETGL--------PVHVA--EDPLTCVARGTGKALE 323 (334)
T ss_pred HHHHHCC--------CcEec--CCHHHHHHHHHHHHHh
Confidence 9999841 24444 3446788889988864
No 19
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=99.94 E-value=1.9e-25 Score=226.77 Aligned_cols=235 Identities=21% Similarity=0.274 Sum_probs=175.8
Q ss_pred HHHHHHHHHHHHh----hcccCCCCCCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhhccCCeEEEeecchHHHHhcC
Q 012375 165 YSRLRHFFATIYS----RMQVKPSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAK 240 (465)
Q Consensus 165 ~~~l~~~~~~~~~----~L~v~~~~~pVll~ep~~~~~~~~~~~~~R~~~~e~l~e~lFE~~vpav~~~~~~vlalya~g 240 (465)
|+.++.+|+++++ .++..+..++++++.|...+ ..+|+++.+ .++. +|++.+.+++++++|++++|
T Consensus 74 ~d~~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~------~~~R~~l~~-a~~~---ag~~~~~li~ep~Aaa~~~g 143 (335)
T PRK13929 74 YDMTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGST------AVERRAISD-AVKN---CGAKNVHLIEEPVAAAIGAD 143 (335)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCC------HHHHHHHHH-HHHH---cCCCeeEeecCHHHHHHhcC
Confidence 4667778887764 46776767899999998764 667776555 3333 99999999999999999997
Q ss_pred -----CCceEEEeecCceeEEEEEeeCeeeccccEEEEeccHHHHHHHHHHHHHhcC-CCCCcHHHHHHHHHhccccccc
Q 012375 241 -----RTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNN-INFGSLYTVRTLKEKLCYVAAD 314 (465)
Q Consensus 241 -----~~tglVVDiG~~~T~v~PV~dG~vl~~~~~~~~~iGG~~lt~~L~~lL~~~~-~~~~~~~~v~~iKe~~c~v~~d 314 (465)
..+++|||+|+++|+++++..|..+.. ...++||+++|++|.+.+.... ... +...+|++|+++|++..+
T Consensus 144 ~~~~~~~~~lvvDiG~gtt~v~vi~~~~~~~~---~~~~~GG~~id~~l~~~l~~~~~~~~-~~~~AE~iK~~l~~~~~~ 219 (335)
T PRK13929 144 LPVDEPVANVVVDIGGGTTEVAIISFGGVVSC---HSIRIGGDQLDEDIVSFVRKKYNLLI-GERTAEQVKMEIGYALIE 219 (335)
T ss_pred CCcCCCceEEEEEeCCCeEEEEEEEeCCEEEe---cCcCCHHHHHHHHHHHHHHHHhCcCc-CHHHHHHHHHHHcCCCCC
Confidence 467899999999999999955544433 3468999999999999987532 222 457899999999998765
Q ss_pred hHHHhhccc--cceEEecCCcEEEecceecc--cccccccCCcCCcccCCHHHHHHHHHhhcCCCCccccccccC-ceEE
Q 012375 315 YKAELSKDT--QASLEIAGEGWFTLSKERFQ--TGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFK-TVIL 389 (465)
Q Consensus 315 ~~~e~~~~~--~~~~~lpd~~~i~l~~er~~--~~E~LF~P~~~~~~~~~L~~~I~~sI~~~~~~dl~~r~~l~~-NIvL 389 (465)
++++..... ...+.+| ..+.++.+++. ++|.+|+ +.+.|.++|++|++ ++ +..++. +|+|
T Consensus 220 ~~~~~~~v~g~~~~~~~p--~~i~i~~~~~~~~i~~~l~~----------i~~~i~~~L~~~~~-~l--~~~~~~~gIvL 284 (335)
T PRK13929 220 HEPETMEVRGRDLVTGLP--KTITLESKEIQGAMRESLLH----------ILEAIRATLEDCPP-EL--SGDIVDRGVIL 284 (335)
T ss_pred CCCceEEEeCCccCCCCC--eEEEEcHHHHHHHHHHHHHH----------HHHHHHHHHHhCCc-cc--chhhcCCCEEE
Confidence 432211100 1112333 46777777776 5788876 89999999999998 76 567887 7999
Q ss_pred ecCCCCccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHh
Q 012375 390 TGGSACLPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLV 438 (465)
Q Consensus 390 tGG~S~ipGl~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsil 438 (465)
|||+|++|||.+||++++.. ++++ ..+|..++=.|+..+
T Consensus 285 tGG~s~lpgl~e~l~~~~~~--------~v~~--~~~P~~~Va~Ga~~~ 323 (335)
T PRK13929 285 TGGGALLNGIKEWLSEEIVV--------PVHV--AANPLESVAIGTGRS 323 (335)
T ss_pred EchhhhhhhHHHHHHHHHCC--------Ccee--CCCHHHHHHHHHHHH
Confidence 99999999999999999952 1333 345677888896665
No 20
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=99.93 E-value=2.2e-25 Score=226.09 Aligned_cols=275 Identities=20% Similarity=0.161 Sum_probs=195.5
Q ss_pred EEEeCCcceEEEEEecC----CCCCccc---c----c--ccccCC--------------ccchH-------HHHHHHHHH
Q 012375 128 VIIDGGSGYCKFGWSKY----DCPSGRT---A----T--FLEFGN--------------IESPM-------YSRLRHFFA 173 (465)
Q Consensus 128 VVID~GS~~~K~Gfage----~~P~~~~---~----s--~~~~G~--------------~~~Pi-------~~~l~~~~~ 173 (465)
|=||+||.++++-..++ ..|+.+. . + .+.+|+ +.+|+ |+.++.+|+
T Consensus 5 ~giDlGt~~s~i~~~~~~~~~~~psvv~~~~~~~~~~~~~~~vG~~A~~~~~~~~~~~~~~~pi~~G~i~d~~~~~~~~~ 84 (333)
T TIGR00904 5 IGIDLGTANTLVYVKGRGIVLNEPSVVAIRTDRDAKTKSILAVGHEAKEMLGKTPGNIVAIRPMKDGVIADFEVTEKMIK 84 (333)
T ss_pred eEEecCcceEEEEECCCCEEEecCCEEEEecCCCCCCCeEEEEhHHHHHhhhcCCCCEEEEecCCCCEEEcHHHHHHHHH
Confidence 77999999999865444 2355432 1 1 122342 13566 467788998
Q ss_pred HHHhh-cccCCCCC-CeEEEecCCCCCCccchHHhHHHHHHHHHHHHhh-ccCCeEEEeecchHHHHhcCC-----CceE
Q 012375 174 TIYSR-MQVKPSTQ-PIVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-LNVPAVCAINQATLALYAAKR-----TSGI 245 (465)
Q Consensus 174 ~~~~~-L~v~~~~~-pVll~ep~~~~~~~~~~~~~R~~~~e~l~e~lFE-~~vpav~~~~~~vlalya~g~-----~tgl 245 (465)
+++++ ++.....+ ++++++|...+ ...|+. ++.+|| ++++.+.++++|++|+|++|. .+++
T Consensus 85 ~~l~~~~~~~~~~~~~~vitvP~~~~------~~~r~~-----~~~~~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~l 153 (333)
T TIGR00904 85 YFIKQVHSRKSFFKPRIVICVPSGIT------PVERRA-----VKESALSAGAREVYLIEEPMAAAIGAGLPVEEPTGSM 153 (333)
T ss_pred HHHHHHhcccccCCCcEEEEeCCCCC------HHHHHH-----HHHHHHHcCCCeEEEecCHHHHHHhcCCcccCCceEE
Confidence 88754 33322223 68999998764 455544 233455 999999999999999999997 6789
Q ss_pred EEeecCceeEEEEE-eeCeeeccccEEEEeccHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHhccccccchHHH--hhc-
Q 012375 246 VVNIGFQVTSVVPI-LHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFGSLYTVRTLKEKLCYVAADYKAE--LSK- 321 (465)
Q Consensus 246 VVDiG~~~T~v~PV-~dG~vl~~~~~~~~~iGG~~lt~~L~~lL~~~~~~~~~~~~v~~iKe~~c~v~~d~~~e--~~~- 321 (465)
|||+|+++|++++| ++|.+... ..++||+++|+.|.+++..+.....+.+.++++|+++|++..+..++ +..
T Consensus 154 VvDiG~gttdvs~v~~~~~~~~~----~~~lGG~did~~l~~~l~~~~~~~~~~~~ae~lK~~l~~~~~~~~~~~~~~~~ 229 (333)
T TIGR00904 154 VVDIGGGTTEVAVISLGGIVVSR----SIRVGGDEFDEAIINYIRRTYNLLIGEQTAERIKIEIGSAYPLNDEPRKMEVR 229 (333)
T ss_pred EEEcCCCeEEEEEEEeCCEEecC----CccchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHhccccccccccceeec
Confidence 99999999999999 66666554 24899999999999988754211224678999999999987653221 110
Q ss_pred cccceEEecCCcEEEecceecccccccccCCcCCcccCCHHHHHHHHHhhcCCCCccccccccC-ceEEecCCCCccchH
Q 012375 322 DTQASLEIAGEGWFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFK-TVILTGGSACLPGLA 400 (465)
Q Consensus 322 ~~~~~~~lpd~~~i~l~~er~~~~E~LF~P~~~~~~~~~L~~~I~~sI~~~~~~dl~~r~~l~~-NIvLtGG~S~ipGl~ 400 (465)
.....+.+|++. .++.+ .+.|++|.|. .++.+.|.+++++|+. ++ +..+++ ||+||||+|++||+.
T Consensus 230 ~~~~~~~~~~~~--~i~~~--~~~e~i~~~~------~~i~~~i~~~l~~~~~-~~--~~~l~~~~IvL~GGss~ipgl~ 296 (333)
T TIGR00904 230 GRDLVTGLPRTI--EITSV--EVREALQEPV------NQIVEAVKRTLEKTPP-EL--AADIVERGIVLTGGGALLRNLD 296 (333)
T ss_pred CccccCCCCeEE--EECHH--HHHHHHHHHH------HHHHHHHHHHHHhCCc-hh--hhhhccCCEEEECcccchhhHH
Confidence 011234555543 34433 5779998873 3689999999999997 66 567886 899999999999999
Q ss_pred HHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhc
Q 012375 401 ERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGN 440 (465)
Q Consensus 401 eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilas 440 (465)
+||++++. +.+....+|..++=.||++++.
T Consensus 297 e~l~~~~~----------~~v~~~~~P~~~va~Ga~~~~~ 326 (333)
T TIGR00904 297 KLLSKETG----------LPVIVADDPLLCVAKGTGKALE 326 (333)
T ss_pred HHHHHHHC----------CCceecCChHHHHHHHHHHHHh
Confidence 99999995 2334445567888899998864
No 21
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=99.90 E-value=4.7e-23 Score=209.29 Aligned_cols=276 Identities=18% Similarity=0.198 Sum_probs=190.7
Q ss_pred EEEeCCcceEEEEEecC----CCCCccc-c----cccccCC--------------ccchH-------HHHHHHHHHHHHh
Q 012375 128 VIIDGGSGYCKFGWSKY----DCPSGRT-A----TFLEFGN--------------IESPM-------YSRLRHFFATIYS 177 (465)
Q Consensus 128 VVID~GS~~~K~Gfage----~~P~~~~-~----s~~~~G~--------------~~~Pi-------~~~l~~~~~~~~~ 177 (465)
+=||+||.++++-..++ ..|+.+. . ..+.+|+ ..+|+ ++..+.+|+++++
T Consensus 6 ~gIDlGt~~~~i~~~~~~~v~~~psvv~~~~~~~~i~~vG~~A~~~~~~~p~~~~~~~pi~~G~i~d~~~~~~~l~~~~~ 85 (336)
T PRK13928 6 IGIDLGTANVLVYVKGKGIVLNEPSVVAIDKNTNKVLAVGEEARRMVGRTPGNIVAIRPLRDGVIADYDVTEKMLKYFIN 85 (336)
T ss_pred eEEEcccccEEEEECCCCEEEccCCEEEEECCCCeEEEecHHHHHhhhcCCCCEEEEccCCCCeEecHHHHHHHHHHHHH
Confidence 77999999999976654 2355322 1 1223343 12455 4677889998887
Q ss_pred hcccC-CCCCC-eEEEecCCCCCCccchHHhHHHHHHHHHHHHhh-ccCCeEEEeecchHHHHhcCC-----CceEEEee
Q 012375 178 RMQVK-PSTQP-IVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-LNVPAVCAINQATLALYAAKR-----TSGIVVNI 249 (465)
Q Consensus 178 ~L~v~-~~~~p-Vll~ep~~~~~~~~~~~~~R~~~~e~l~e~lFE-~~vpav~~~~~~vlalya~g~-----~tglVVDi 249 (465)
++... +.++| ++++.|.... ..+++ .++.+|| +|++.+.++++|++|+|++|. ..++|||+
T Consensus 86 ~~~~~~~~~~p~~vitvP~~~~-------~~~r~----~~~~a~~~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lVvDi 154 (336)
T PRK13928 86 KACGKRFFSKPRIMICIPTGIT-------SVEKR----AVREAAEQAGAKKVYLIEEPLAAAIGAGLDISQPSGNMVVDI 154 (336)
T ss_pred HHhccCCCCCCeEEEEeCCCCC-------HHHHH----HHHHHHHHcCCCceEecccHHHHHHHcCCcccCCCeEEEEEe
Confidence 76544 55677 8888876542 23333 3333444 999999999999999999986 67899999
Q ss_pred cCceeEEEEEeeCeeeccccEEEEeccHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHhccccccchHHH-hhcc-ccceE
Q 012375 250 GFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFGSLYTVRTLKEKLCYVAADYKAE-LSKD-TQASL 327 (465)
Q Consensus 250 G~~~T~v~PV~dG~vl~~~~~~~~~iGG~~lt~~L~~lL~~~~~~~~~~~~v~~iKe~~c~v~~d~~~e-~~~~-~~~~~ 327 (465)
|+++|++++|..|.++.. ...++||+++|+.|.+.+..+.--......++++|+++|++..+..++ +... ....+
T Consensus 155 Gggttdvsvv~~g~~~~~---~~~~lGG~did~~i~~~l~~~~~~~~~~~~ae~lK~~~~~~~~~~~~~~~~v~g~~~~~ 231 (336)
T PRK13928 155 GGGTTDIAVLSLGGIVTS---SSIKVAGDKFDEAIIRYIRKKYKLLIGERTAEEIKIKIGTAFPGAREEEMEIRGRDLVT 231 (336)
T ss_pred CCCeEEEEEEEeCCEEEe---CCcCCHHHHHHHHHHHHHHHHhchhcCHHHHHHHHHHhcccccccCCcEEEEecccccC
Confidence 999999999999987765 357999999999999988743211123467999999998775442111 1000 00011
Q ss_pred EecCCcEEEecceecccccccccCCcCCcccCCHHHHHHHHHhhcCCCCccccccccC-ceEEecCCCCccchHHHHHHH
Q 012375 328 EIAGEGWFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFK-TVILTGGSACLPGLAERLEKE 406 (465)
Q Consensus 328 ~lpd~~~i~l~~er~~~~E~LF~P~~~~~~~~~L~~~I~~sI~~~~~~dl~~r~~l~~-NIvLtGG~S~ipGl~eRL~~E 406 (465)
.+|+ .+.++.+++. |+++.+- ..+.+.|.+++++++. ++ +...+. +|+||||+|++||+.++|+++
T Consensus 232 ~~~~--~~~i~~~~~~--eii~~~~------~~i~~~i~~~l~~~~~-~~--~~~~i~~~IvL~GG~s~ipgi~e~l~~~ 298 (336)
T PRK13928 232 GLPK--TITVTSEEIR--EALKEPV------SAIVQAVKSVLERTPP-EL--SADIIDRGIIMTGGGALLHGLDKLLAEE 298 (336)
T ss_pred CCce--EEEECHHHHH--HHHHHHH------HHHHHHHHHHHHhCCc-cc--cHhhcCCCEEEECcccchhhHHHHHHHH
Confidence 1222 2455555444 6665542 3588899999999987 66 456776 899999999999999999999
Q ss_pred HHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhc
Q 012375 407 LRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGN 440 (465)
Q Consensus 407 L~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilas 440 (465)
+.. ++++ ..+|..++=+||++++.
T Consensus 299 ~~~--------~v~~--~~~P~~ava~Gaa~~~~ 322 (336)
T PRK13928 299 TKV--------PVYI--AEDPISCVALGTGKMLE 322 (336)
T ss_pred HCC--------Ccee--cCCHHHHHHHHHHHHHh
Confidence 952 1333 34567899999988864
No 22
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=99.88 E-value=4.5e-22 Score=199.41 Aligned_cols=277 Identities=17% Similarity=0.192 Sum_probs=182.2
Q ss_pred cEEEeCCcceEEEEEecCC----CCCccc-----ccccccCC--------------ccchH-------HHHHHHHHHHHH
Q 012375 127 SVIIDGGSGYCKFGWSKYD----CPSGRT-----ATFLEFGN--------------IESPM-------YSRLRHFFATIY 176 (465)
Q Consensus 127 ~VVID~GS~~~K~Gfage~----~P~~~~-----~s~~~~G~--------------~~~Pi-------~~~l~~~~~~~~ 176 (465)
-+=||+||.++++--.++. +|+.+- ...+.+|+ +.+|+ ++..+.++++++
T Consensus 3 ~igIDLGT~~t~i~~~~~Giv~~epSvVA~~~~~~~i~avG~~A~~m~gktp~~i~~~~Pl~~GvI~D~~~~~~~l~~~l 82 (326)
T PF06723_consen 3 DIGIDLGTSNTRIYVKGKGIVLNEPSVVAYDKDTGKILAVGDEAKAMLGKTPDNIEVVRPLKDGVIADYEAAEEMLRYFL 82 (326)
T ss_dssp EEEEEE-SSEEEEEETTTEEEEEEES-EEEETTT--EEEESHHHHTTTTS-GTTEEEE-SEETTEESSHHHHHHHHHHHH
T ss_pred ceEEecCcccEEEEECCCCEEEecCcEEEEECCCCeEEEEhHHHHHHhhcCCCccEEEccccCCcccCHHHHHHHHHHHH
Confidence 4789999999999444432 355431 11223442 23565 467888888888
Q ss_pred hhcccC-C-CCCCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhhccCCeEEEeecchHHHHhcCC-----CceEEEee
Q 012375 177 SRMQVK-P-STQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKR-----TSGIVVNI 249 (465)
Q Consensus 177 ~~L~v~-~-~~~pVll~ep~~~~~~~~~~~~~R~~~~e~l~e~lFE~~vpav~~~~~~vlalya~g~-----~tglVVDi 249 (465)
++..-. . ....++++.|.-. +..+|+.+.+.+.+ .|+..++++++|++|++|+|. ...+||||
T Consensus 83 ~k~~~~~~~~~p~vvi~vP~~~------T~verrA~~~a~~~----aGa~~V~li~ep~AaAiGaGl~i~~~~g~miVDI 152 (326)
T PF06723_consen 83 KKALGRRSFFRPRVVICVPSGI------TEVERRALIDAARQ----AGARKVYLIEEPIAAAIGAGLDIFEPRGSMIVDI 152 (326)
T ss_dssp HHHHTSS-SS--EEEEEE-SS--------HHHHHHHHHHHHH----TT-SEEEEEEHHHHHHHHTT--TTSSS-EEEEEE
T ss_pred HHhccCCCCCCCeEEEEeCCCC------CHHHHHHHHHHHHH----cCCCEEEEecchHHHHhcCCCCCCCCCceEEEEE
Confidence 764432 2 3345777788654 46777776666655 899999999999999999984 35699999
Q ss_pred cCceeEEEEEeeCeeeccccEEEEeccHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHhccccccchHHHhhccccceEEe
Q 012375 250 GFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFGSLYTVRTLKEKLCYVAADYKAELSKDTQASLEI 329 (465)
Q Consensus 250 G~~~T~v~PV~dG~vl~~~~~~~~~iGG~~lt~~L~~lL~~~~~~~~~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~~~l 329 (465)
|+++|.++-+..|.++.+ +.+++||+++++.+.+.+++++--.-+..++|+||++++++...-+++. ..-..-.+
T Consensus 153 G~GtTdiavislggiv~s---~si~~gG~~~DeaI~~~ir~~y~l~Ig~~tAE~iK~~~g~~~~~~~~~~--~~v~Grd~ 227 (326)
T PF06723_consen 153 GGGTTDIAVISLGGIVAS---RSIRIGGDDIDEAIIRYIREKYNLLIGERTAEKIKIEIGSASPPEEEES--MEVRGRDL 227 (326)
T ss_dssp -SS-EEEEEEETTEEEEE---EEES-SHHHHHHHHHHHHHHHHSEE--HHHHHHHHHHH-BSS--HHHHE--EEEEEEET
T ss_pred CCCeEEEEEEECCCEEEE---EEEEecCcchhHHHHHHHHHhhCcccCHHHHHHHHHhcceeeccCCCce--EEEECccc
Confidence 999999999999999876 7889999999999999999876434567899999999998865433321 01111122
Q ss_pred cCC--cEEEec-ceecccccccccCCcCCcccCCHHHHHHHHHhhcCCCCccccccccC-ceEEecCCCCccchHHHHHH
Q 012375 330 AGE--GWFTLS-KERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFK-TVILTGGSACLPGLAERLEK 405 (465)
Q Consensus 330 pd~--~~i~l~-~er~~~~E~LF~P~~~~~~~~~L~~~I~~sI~~~~~~dl~~r~~l~~-NIvLtGG~S~ipGl~eRL~~ 405 (465)
-+| +.+.++ .+-..+.+..++ .|.+.|.++++++|+ ++ ..++++ +|+||||+|+++||.++|++
T Consensus 228 ~tGlP~~~~i~~~ev~~ai~~~~~---------~I~~~i~~~Le~~pP-el--~~DI~~~GI~LtGGga~l~Gl~~~i~~ 295 (326)
T PF06723_consen 228 ITGLPKSIEITSSEVREAIEPPVD---------QIVEAIKEVLEKTPP-EL--AADILENGIVLTGGGALLRGLDEYISE 295 (326)
T ss_dssp TTTCEEEEEEEHHHHHHHHHHHHH---------HHHHHHHHHHHTS-H-HH--HHHHHHH-EEEESGGGGSBTHHHHHHH
T ss_pred cCCCcEEEEEcHHHHHHHHHHHHH---------HHHHHHHHHHHhCCH-HH--HHHHHHCCEEEEChhhhhccHHHHHHH
Confidence 223 234444 232233332222 489999999999999 87 356665 59999999999999999999
Q ss_pred HHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhc
Q 012375 406 ELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGN 440 (465)
Q Consensus 406 EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilas 440 (465)
++. ++|...++|.+++-.|+..+..
T Consensus 296 ~~~----------~pV~va~~P~~~va~G~~~~l~ 320 (326)
T PF06723_consen 296 ETG----------VPVRVADDPLTAVARGAGKLLE 320 (326)
T ss_dssp HHS----------S-EEE-SSTTTHHHHHHHHTTC
T ss_pred HHC----------CCEEEcCCHHHHHHHHHHHHHh
Confidence 995 5566566778899999776543
No 23
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=99.71 E-value=2.9e-16 Score=153.17 Aligned_cols=275 Identities=20% Similarity=0.192 Sum_probs=194.3
Q ss_pred cEEEeCCcceEEEEEecCC----CCCccc-------ccccccCC--------------ccchHH-------HHHHHHHHH
Q 012375 127 SVIIDGGSGYCKFGWSKYD----CPSGRT-------ATFLEFGN--------------IESPMY-------SRLRHFFAT 174 (465)
Q Consensus 127 ~VVID~GS~~~K~Gfage~----~P~~~~-------~s~~~~G~--------------~~~Pi~-------~~l~~~~~~ 174 (465)
.|=||+||.+|++---|.. .|+.+- +..+.+|+ ..+||. +..+.++.+
T Consensus 8 diGIDLGTanTlV~~k~kgIVl~ePSVVAi~~~~~~~~v~aVG~eAK~MlGrTP~ni~aiRPmkdGVIAd~~~te~ml~~ 87 (342)
T COG1077 8 DIGIDLGTANTLVYVKGKGIVLNEPSVVAIESEGKTKVVLAVGEEAKQMLGRTPGNIVAIRPMKDGVIADFEVTELMLKY 87 (342)
T ss_pred cceeeecccceEEEEcCceEEecCceEEEEeecCCCceEEEehHHHHHHhccCCCCceEEeecCCcEeecHHHHHHHHHH
Confidence 5889999999998655432 355321 11222332 236763 456666777
Q ss_pred HHhhcccC---CCCCCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhhccCCeEEEeecchHHHHhcCC----C-ceEE
Q 012375 175 IYSRMQVK---PSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKR----T-SGIV 246 (465)
Q Consensus 175 ~~~~L~v~---~~~~pVll~ep~~~~~~~~~~~~~R~~~~e~l~e~lFE~~vpav~~~~~~vlalya~g~----~-tglV 246 (465)
+.++..-+ +..-.++++.|... +.-.|+.++|.+.+ -+...++++++|.+|++++|. . -.+|
T Consensus 88 fik~~~~~~~~~~~prI~i~vP~g~------T~VErrAi~ea~~~----aGa~~V~lieEp~aAAIGaglpi~ep~G~mv 157 (342)
T COG1077 88 FIKKVHKNGSSFPKPRIVICVPSGI------TDVERRAIKEAAES----AGAREVYLIEEPMAAAIGAGLPIMEPTGSMV 157 (342)
T ss_pred HHHHhccCCCCCCCCcEEEEecCCc------cHHHHHHHHHHHHh----ccCceEEEeccHHHHHhcCCCcccCCCCCEE
Confidence 66543321 22334777788654 46778888887766 799999999999999999984 3 4799
Q ss_pred EeecCceeEEEEEeeCeeeccccEEEEeccHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHhccccccchHHHhhcc----
Q 012375 247 VNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFGSLYTVRTLKEKLCYVAADYKAELSKD---- 322 (465)
Q Consensus 247 VDiG~~~T~v~PV~dG~vl~~~~~~~~~iGG~~lt~~L~~lL~~~~~~~~~~~~v~~iKe~~c~v~~d~~~e~~~~---- 322 (465)
||||.++|.|.-+..|-++.. +++.+||+.+++.+...++++.--.-...++|+||.+.+++..+...+..+.
T Consensus 158 vDIGgGTTevaVISlggiv~~---~Sirv~GD~~De~Ii~yvr~~~nl~IGe~taE~iK~eiG~a~~~~~~~~~~~eV~G 234 (342)
T COG1077 158 VDIGGGTTEVAVISLGGIVSS---SSVRVGGDKMDEAIIVYVRKKYNLLIGERTAEKIKIEIGSAYPEEEDEELEMEVRG 234 (342)
T ss_pred EEeCCCceeEEEEEecCEEEE---eeEEEecchhhHHHHHHHHHHhCeeecHHHHHHHHHHhcccccccCCccceeeEEe
Confidence 999999999999999998876 6789999999999999998875444457889999999999876433221110
Q ss_pred ccceEEecCCcEEEecce--ecccccccccCCcCCcccCCHHHHHHHHHhhcCCCCccccccccCc-eEEecCCCCccch
Q 012375 323 TQASLEIAGEGWFTLSKE--RFQTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKT-VILTGGSACLPGL 399 (465)
Q Consensus 323 ~~~~~~lpd~~~i~l~~e--r~~~~E~LF~P~~~~~~~~~L~~~I~~sI~~~~~~dl~~r~~l~~N-IvLtGG~S~ipGl 399 (465)
.+....+| +.+.+..+ +....|.+ ..|.++|...+.+||+ ++. .+.+.+ |+++||+|++.||
T Consensus 235 rdl~~GlP--k~i~i~s~ev~eal~~~v----------~~Iveair~~Le~tpP-eL~--~DI~ergivltGGGalLrgl 299 (342)
T COG1077 235 RDLVTGLP--KTITINSEEIAEALEEPL----------NGIVEAIRLVLEKTPP-ELA--ADIVERGIVLTGGGALLRGL 299 (342)
T ss_pred eecccCCC--eeEEEcHHHHHHHHHHHH----------HHHHHHHHHHHhhCCc-hhc--ccHhhCceEEecchHHhcCc
Confidence 11112233 33444433 22233333 2489999999999999 884 578888 9999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhh
Q 012375 400 AERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVG 439 (465)
Q Consensus 400 ~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsila 439 (465)
.+.|.+|.. +.|.-.++|-.++=+|+.+..
T Consensus 300 D~~i~~et~----------~pv~ia~~pL~~Va~G~G~~l 329 (342)
T COG1077 300 DRLLSEETG----------VPVIIADDPLTCVAKGTGKAL 329 (342)
T ss_pred hHhHHhccC----------CeEEECCChHHHHHhccchhh
Confidence 999999975 566656677778878855543
No 24
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.57 E-value=8.6e-14 Score=134.79 Aligned_cols=229 Identities=16% Similarity=0.206 Sum_probs=147.8
Q ss_pred EeCCcceEEEEEec-CCCCCccccc---ccccCCccchHHHHHHHHHHHHH----hhcccCCCCCCeEEEecCCCCCCcc
Q 012375 130 IDGGSGYCKFGWSK-YDCPSGRTAT---FLEFGNIESPMYSRLRHFFATIY----SRMQVKPSTQPIVVSIPICHYDDTE 201 (465)
Q Consensus 130 ID~GS~~~K~Gfag-e~~P~~~~~s---~~~~G~~~~Pi~~~l~~~~~~~~----~~L~v~~~~~pVll~ep~~~~~~~~ 201 (465)
||+||.++|+=-.. .+.+-.+-+. .+.-|.+.. .+..+.+++++. ++++. .-..++++.|....
T Consensus 2 ~dig~~~ik~v~~~~~~~~~~~~~~~~~~~~~g~I~d--~~~~~~~l~~l~~~a~~~~g~--~~~~vvisVP~~~~---- 73 (239)
T TIGR02529 2 VDLGTANIVIVVLDEDGQPVAGVMQFADVVRDGIVVD--FLGAVEIVRRLKDTLEQKLGI--ELTHAATAIPPGTI---- 73 (239)
T ss_pred CCcccceEEEEEEecCCCEEEEEecccccccCCeEEE--hHHHHHHHHHHHHHHHHHhCC--CcCcEEEEECCCCC----
Confidence 69999999974432 2211111110 111222221 244455555544 34433 23468999887553
Q ss_pred chHHhHHHHHHHHHHHHhhccCCeEEEeecchHHHHhcCCCceEEEeecCceeEEEEEeeCeeeccccEEEEeccHHHHH
Q 012375 202 NAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKRTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLT 281 (465)
Q Consensus 202 ~~~~~R~~~~e~l~e~lFE~~vpav~~~~~~vlalya~g~~tglVVDiG~~~T~v~PV~dG~vl~~~~~~~~~iGG~~lt 281 (465)
...|+.+.+.+-. .|+.-+.+++++++++.+++....+|||+|+++|+++-+.+|.++.. ...++||+++|
T Consensus 74 --~~~r~a~~~a~~~----aGl~~~~li~ep~Aaa~~~~~~~~~vvDiGggtt~i~i~~~G~i~~~---~~~~~GG~~it 144 (239)
T TIGR02529 74 --EGDPKVIVNVIES----AGIEVLHVLDEPTAAAAVLQIKNGAVVDVGGGTTGISILKKGKVIYS---ADEPTGGTHMS 144 (239)
T ss_pred --cccHHHHHHHHHH----cCCceEEEeehHHHHHHHhcCCCcEEEEeCCCcEEEEEEECCeEEEE---EeeecchHHHH
Confidence 3455544433333 89999999999999999988878899999999999998888987764 56799999999
Q ss_pred HHHHHHHHhcCCCCCcHHHHHHHHHhccccccchHHHhhccccceEEecCCcEEEecceecccccccccCCcCCcccCCH
Q 012375 282 GYLRLLMQQNNINFGSLYTVRTLKEKLCYVAADYKAELSKDTQASLEIAGEGWFTLSKERFQTGEILFQPRMADVRTMGL 361 (465)
Q Consensus 282 ~~L~~lL~~~~~~~~~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~~~lpd~~~i~l~~er~~~~E~LF~P~~~~~~~~~L 361 (465)
+.+.+.+.. +...+|.+|..... .++. +.+. +|. ...+
T Consensus 145 ~~Ia~~~~i------~~~~AE~~K~~~~~-----~~~~----------------------~~~i----~~~-----~~~i 182 (239)
T TIGR02529 145 LVLAGAYGI------SFEEAEEYKRGHKD-----EEEI----------------------FPVV----KPV-----YQKM 182 (239)
T ss_pred HHHHHHhCC------CHHHHHHHHHhcCC-----HHHH----------------------HHHH----HHH-----HHHH
Confidence 988766532 45788899876431 1110 0000 110 0125
Q ss_pred HHHHHHHHhhcCCCCccccccccCceEEecCCCCccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHH
Q 012375 362 DQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKL 437 (465)
Q Consensus 362 ~~~I~~sI~~~~~~dl~~r~~l~~NIvLtGG~S~ipGl~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsi 437 (465)
.+.|.+++++.++ ..|+||||+|++||+.++|++++. ++|..+.+|.++.=+|+.+
T Consensus 183 ~~~i~~~l~~~~~----------~~v~LtGG~a~ipgl~e~l~~~lg----------~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 183 ASIVKRHIEGQGV----------KDLYLVGGACSFSGFADVFEKQLG----------LNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred HHHHHHHHHhCCC----------CEEEEECchhcchhHHHHHHHHhC----------CCcccCCCCCeehhheeec
Confidence 5556666665443 369999999999999999999985 2333455677888888654
No 25
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.53 E-value=1.2e-12 Score=128.97 Aligned_cols=234 Identities=17% Similarity=0.174 Sum_probs=146.9
Q ss_pred ccEEEeCCcceEEEEEecCCCCCcc----cc-cccccCCccchHHHHHHHHHHHHH----hhcccCCCCCCeEEEecCCC
Q 012375 126 GSVIIDGGSGYCKFGWSKYDCPSGR----TA-TFLEFGNIESPMYSRLRHFFATIY----SRMQVKPSTQPIVVSIPICH 196 (465)
Q Consensus 126 ~~VVID~GS~~~K~Gfage~~P~~~----~~-s~~~~G~~~~Pi~~~l~~~~~~~~----~~L~v~~~~~pVll~ep~~~ 196 (465)
-.++||+||..+|+=.+ +..+... .+ ..+..|.+.. .+...+.++.+. +++++. -..|+++.|...
T Consensus 25 ~~~~iDiGSssi~~vv~-~~~~~~~~~~~~~~~~vr~G~i~d--i~~a~~~i~~~~~~ae~~~g~~--i~~v~~~vp~~~ 99 (267)
T PRK15080 25 LKVGVDLGTANIVLAVL-DEDGQPVAGALEWADVVRDGIVVD--FIGAVTIVRRLKATLEEKLGRE--LTHAATAIPPGT 99 (267)
T ss_pred EEEEEEccCceEEEEEE-cCCCCEEEEEeccccccCCCEEee--HHHHHHHHHHHHHHHHHHhCCC--cCeEEEEeCCCC
Confidence 35999999999997654 3333310 00 0122233221 233333443333 344544 235666777543
Q ss_pred CCCccchHHhHHHHHHHHHHHHhhccCCeEEEeecchHHHHhcCCCceEEEeecCceeEEEEEeeCeeeccccEEEEecc
Q 012375 197 YDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKRTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLG 276 (465)
Q Consensus 197 ~~~~~~~~~~R~~~~e~l~e~lFE~~vpav~~~~~~vlalya~g~~tglVVDiG~~~T~v~PV~dG~vl~~~~~~~~~iG 276 (465)
. ..+|+.+.+.+- +.|+.-..++.++.+++++.+...++|||+|+++|+++-+.+|.+... ...++|
T Consensus 100 ~------~~~~~~~~~~~~----~aGl~~~~ii~e~~A~a~~~~~~~~~vvDIGggtt~i~v~~~g~~~~~---~~~~~G 166 (267)
T PRK15080 100 S------EGDPRAIINVVE----SAGLEVTHVLDEPTAAAAVLGIDNGAVVDIGGGTTGISILKDGKVVYS---ADEPTG 166 (267)
T ss_pred C------chhHHHHHHHHH----HcCCceEEEechHHHHHHHhCCCCcEEEEeCCCcEEEEEEECCeEEEE---ecccCc
Confidence 2 234444443222 288888889999999999888777899999999999998888988764 567999
Q ss_pred HHHHHHHHHHHHHhcCCCCCcHHHHHHHHHhccccccchHHHhhccccceEEecCCcEEEecceecccccccccCCcCCc
Q 012375 277 ALKLTGYLRLLMQQNNINFGSLYTVRTLKEKLCYVAADYKAELSKDTQASLEIAGEGWFTLSKERFQTGEILFQPRMADV 356 (465)
Q Consensus 277 G~~lt~~L~~lL~~~~~~~~~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~~~lpd~~~i~l~~er~~~~E~LF~P~~~~~ 356 (465)
|+++|+.+.+.+.. +.+.+|.+|..... .+++ ..+-+.++
T Consensus 167 G~~it~~Ia~~l~i------~~~eAE~lK~~~~~-----~~~~----------------------~~ii~~~~------- 206 (267)
T PRK15080 167 GTHMSLVLAGAYGI------SFEEAEQYKRDPKH-----HKEI----------------------FPVVKPVV------- 206 (267)
T ss_pred hHHHHHHHHHHhCC------CHHHHHHHHhccCC-----HHHH----------------------HHHHHHHH-------
Confidence 99999998876632 45778888876320 0000 00000110
Q ss_pred ccCCHHHHHHHHHhhcCCCCccccccccCceEEecCCCCccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhH
Q 012375 357 RTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAK 436 (465)
Q Consensus 357 ~~~~L~~~I~~sI~~~~~~dl~~r~~l~~NIvLtGG~S~ipGl~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggs 436 (465)
..+.+.|.+.+++.+ ...|+||||+|++||+.+.+++.+. +.+..+++|.+++=+|+.
T Consensus 207 --~~i~~~i~~~l~~~~----------~~~IvLtGG~s~lpgl~e~l~~~lg----------~~v~~~~~P~~~~a~Gaa 264 (267)
T PRK15080 207 --EKMASIVARHIEGQD----------VEDIYLVGGTCCLPGFEEVFEKQTG----------LPVHKPQHPLFVTPLGIA 264 (267)
T ss_pred --HHHHHHHHHHHhcCC----------CCEEEEECCcccchhHHHHHHHHhC----------CCcccCCCchHHHHHHHH
Confidence 013344444444322 2579999999999999999999984 223335677889999988
Q ss_pred Hhh
Q 012375 437 LVG 439 (465)
Q Consensus 437 ila 439 (465)
+++
T Consensus 265 ~~~ 267 (267)
T PRK15080 265 LSC 267 (267)
T ss_pred hhC
Confidence 753
No 26
>CHL00094 dnaK heat shock protein 70
Probab=99.26 E-value=5.7e-10 Score=122.44 Aligned_cols=211 Identities=17% Similarity=0.200 Sum_probs=129.1
Q ss_pred CCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhhccCCeEEEeecchHHHHhcCC-----CceEEEeecCceeEEEEEe
Q 012375 186 QPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKR-----TSGIVVNIGFQVTSVVPIL 260 (465)
Q Consensus 186 ~pVll~ep~~~~~~~~~~~~~R~~~~e~l~e~lFE~~vpav~~~~~~vlalya~g~-----~tglVVDiG~~~T~v~PV~ 260 (465)
..++++.|.... ...|+.+++. .+. .|+.-+.++++|.+|++++|. .+-+|+|+|+++++|+-+.
T Consensus 136 ~~~VItVPa~f~------~~qR~a~~~A-a~~---AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~ 205 (621)
T CHL00094 136 TQAVITVPAYFN------DSQRQATKDA-GKI---AGLEVLRIINEPTAASLAYGLDKKNNETILVFDLGGGTFDVSILE 205 (621)
T ss_pred CeEEEEECCCCC------HHHHHHHHHH-HHH---cCCceEEEeccHHHHHHHhccccCCCCEEEEEEcCCCeEEEEEEE
Confidence 357888887663 4566665554 343 899999999999999999874 3579999999999998775
Q ss_pred eCeeecc--ccEEEEeccHHHHHHHHHHHHHhc-----CCCCCc--------HHHHHHHHHhccccccchHHHhhccccc
Q 012375 261 HGKVMRK--VGVEVMGLGALKLTGYLRLLMQQN-----NINFGS--------LYTVRTLKEKLCYVAADYKAELSKDTQA 325 (465)
Q Consensus 261 dG~vl~~--~~~~~~~iGG~~lt~~L~~lL~~~-----~~~~~~--------~~~v~~iKe~~c~v~~d~~~e~~~~~~~ 325 (465)
.+..... ++....++||+++++.|.+.+.++ +..... ...++.+|+.++... ..
T Consensus 206 ~~~~~~~vla~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~-----------~~ 274 (621)
T CHL00094 206 VGDGVFEVLSTSGDTHLGGDDFDKKIVNWLIKEFKKKEGIDLSKDRQALQRLTEAAEKAKIELSNLT-----------QT 274 (621)
T ss_pred EcCCEEEEEEEecCCCcChHHHHHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHhcCCCC-----------ce
Confidence 4422111 012235799999999888766432 222211 134666777655321 11
Q ss_pred eEEecC------C-cE--EEecceecc-cccccccCCcCCcccCCHHHHHHHHHhhcCCCCccccccccCceEEecCCCC
Q 012375 326 SLEIAG------E-GW--FTLSKERFQ-TGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSAC 395 (465)
Q Consensus 326 ~~~lpd------~-~~--i~l~~er~~-~~E~LF~P~~~~~~~~~L~~~I~~sI~~~~~~dl~~r~~l~~NIvLtGG~S~ 395 (465)
.+.+|. | .. ..|..++|. ..+.+++ .+.+.|.+++.+... . ..-...|+|+||+|+
T Consensus 275 ~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~---------~~~~~i~~~L~~a~~-~----~~~i~~ViLvGGssr 340 (621)
T CHL00094 275 EINLPFITATQTGPKHIEKTLTRAKFEELCSDLIN---------RCRIPVENALKDAKL-D----KSDIDEVVLVGGSTR 340 (621)
T ss_pred EEEEeecccCCCCCeeEEEEEcHHHHHHHHHHHHH---------HHHHHHHHHHHHcCC-C----hhhCcEEEEECCccC
Confidence 122220 1 11 223222221 1222221 244556666666543 1 233478999999999
Q ss_pred ccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhcC
Q 012375 396 LPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGNL 441 (465)
Q Consensus 396 ipGl~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilasl 441 (465)
+|++.+.|++.+... +....+|..++-.||++.|..
T Consensus 341 iP~v~~~l~~~fg~~----------~~~~~~pdeava~GAA~~aa~ 376 (621)
T CHL00094 341 IPAIQELVKKLLGKK----------PNQSVNPDEVVAIGAAVQAGV 376 (621)
T ss_pred ChHHHHHHHHHhCCC----------cCcCCCchhHHHhhhHHHHHH
Confidence 999999999877421 122234567888999998863
No 27
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=99.23 E-value=8.3e-10 Score=121.33 Aligned_cols=210 Identities=17% Similarity=0.182 Sum_probs=129.9
Q ss_pred CCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhhccCCeEEEeecchHHHHhcCC-----CceEEEeecCceeEEEEEe
Q 012375 186 QPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKR-----TSGIVVNIGFQVTSVVPIL 260 (465)
Q Consensus 186 ~pVll~ep~~~~~~~~~~~~~R~~~~e~l~e~lFE~~vpav~~~~~~vlalya~g~-----~tglVVDiG~~~T~v~PV~ 260 (465)
..++++.|.... ...|+.+++.. +. .|++-+.++++|.+|++++|. .+-+|+|+|+++++|+-+-
T Consensus 134 ~~~VItVPa~f~------~~qR~a~~~Aa-~~---AGl~v~~li~EptAAAl~y~~~~~~~~~vlV~D~GggT~dvsv~~ 203 (627)
T PRK00290 134 TEAVITVPAYFN------DAQRQATKDAG-KI---AGLEVLRIINEPTAAALAYGLDKKGDEKILVYDLGGGTFDVSILE 203 (627)
T ss_pred ceEEEEECCCCC------HHHHHHHHHHH-HH---cCCceEEEecchHHHHHHhhhccCCCCEEEEEECCCCeEEEEEEE
Confidence 358899888764 45676665433 33 899999999999999998863 5689999999999988664
Q ss_pred eCeeecc--ccEEEEeccHHHHHHHHHHHHHhc-----CCCCC-c-------HHHHHHHHHhccccccchHHHhhccccc
Q 012375 261 HGKVMRK--VGVEVMGLGALKLTGYLRLLMQQN-----NINFG-S-------LYTVRTLKEKLCYVAADYKAELSKDTQA 325 (465)
Q Consensus 261 dG~vl~~--~~~~~~~iGG~~lt~~L~~lL~~~-----~~~~~-~-------~~~v~~iKe~~c~v~~d~~~e~~~~~~~ 325 (465)
-+..... ++....++||.++++.|.+.+..+ +.++. . ...++.+|+.++.-. ..
T Consensus 204 ~~~~~~~vla~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~rL~~~ae~aK~~LS~~~-----------~~ 272 (627)
T PRK00290 204 IGDGVFEVLSTNGDTHLGGDDFDQRIIDYLADEFKKENGIDLRKDKMALQRLKEAAEKAKIELSSAQ-----------QT 272 (627)
T ss_pred EeCCeEEEEEecCCCCcChHHHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCC-----------eE
Confidence 4321111 011234799999999888766432 22221 1 124566666654321 11
Q ss_pred eEEec----C--C-c--EEEecceec-ccccccccCCcCCcccCCHHHHHHHHHhhcCCCCccccccccCceEEecCCCC
Q 012375 326 SLEIA----G--E-G--WFTLSKERF-QTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSAC 395 (465)
Q Consensus 326 ~~~lp----d--~-~--~i~l~~er~-~~~E~LF~P~~~~~~~~~L~~~I~~sI~~~~~~dl~~r~~l~~NIvLtGG~S~ 395 (465)
.+.++ | | . .+.|..+.| ...+.++. .+.+.|.+++.+... . ..-...|+|+||+|+
T Consensus 273 ~i~i~~~~~d~~g~~~~~~~itR~~fe~l~~~l~~---------~~~~~i~~~l~~a~~-~----~~~id~ViLvGGssr 338 (627)
T PRK00290 273 EINLPFITADASGPKHLEIKLTRAKFEELTEDLVE---------RTIEPCKQALKDAGL-S----VSDIDEVILVGGSTR 338 (627)
T ss_pred EEEEeecccCCCCCeEEEEEECHHHHHHHHHHHHH---------HHHHHHHHHHHHcCC-C----hhhCcEEEEECCcCC
Confidence 12221 1 1 1 233333322 12222322 355667777776654 2 223478999999999
Q ss_pred ccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhc
Q 012375 396 LPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGN 440 (465)
Q Consensus 396 ipGl~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilas 440 (465)
+|.+.++|++.+.. .+....++..++-.||++.|.
T Consensus 339 iP~v~~~l~~~fg~----------~~~~~~npdeava~GAa~~aa 373 (627)
T PRK00290 339 MPAVQELVKEFFGK----------EPNKGVNPDEVVAIGAAIQGG 373 (627)
T ss_pred ChHHHHHHHHHhCC----------CCCcCcCChHHHHHhHHHHHH
Confidence 99999999987632 112233456788899999875
No 28
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=99.23 E-value=7.9e-10 Score=120.86 Aligned_cols=210 Identities=18% Similarity=0.218 Sum_probs=129.9
Q ss_pred CCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhhccCCeEEEeecchHHHHhcCC------CceEEEeecCceeEEEEE
Q 012375 186 QPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKR------TSGIVVNIGFQVTSVVPI 259 (465)
Q Consensus 186 ~pVll~ep~~~~~~~~~~~~~R~~~~e~l~e~lFE~~vpav~~~~~~vlalya~g~------~tglVVDiG~~~T~v~PV 259 (465)
..++++.|.... ...|+.+++. ++. .|++-+.++++|.+|++++|. .+-+|+|+|+++++++-+
T Consensus 131 ~~~VItVPa~f~------~~qR~a~~~A-a~~---AGl~v~~li~EptAAAl~y~~~~~~~~~~vlV~D~Gggt~dvsv~ 200 (595)
T TIGR02350 131 TEAVITVPAYFN------DAQRQATKDA-GKI---AGLEVLRIINEPTAAALAYGLDKSKKDEKILVFDLGGGTFDVSIL 200 (595)
T ss_pred CeEEEEECCCCC------HHHHHHHHHH-HHH---cCCceEEEecchHHHHHHHhhcccCCCcEEEEEECCCCeEEEEEE
Confidence 358899888764 4567666553 333 899999999999999998763 356999999999998766
Q ss_pred eeC--ee-eccccEEEEeccHHHHHHHHHHHHHhc-----CCCCCc--------HHHHHHHHHhccccccchHHHhhccc
Q 012375 260 LHG--KV-MRKVGVEVMGLGALKLTGYLRLLMQQN-----NINFGS--------LYTVRTLKEKLCYVAADYKAELSKDT 323 (465)
Q Consensus 260 ~dG--~v-l~~~~~~~~~iGG~~lt~~L~~lL~~~-----~~~~~~--------~~~v~~iKe~~c~v~~d~~~e~~~~~ 323 (465)
.-+ .. +.. +.....+||.++++.|.+.+..+ +..... ...++.+|+.++...
T Consensus 201 ~~~~~~~~v~~-~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~----------- 268 (595)
T TIGR02350 201 EIGDGVFEVLS-TAGDTHLGGDDFDQRIIDWLADEFKKEEGIDLSKDKMALQRLKEAAEKAKIELSSVL----------- 268 (595)
T ss_pred EecCCeEEEEE-ecCCcccCchhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCC-----------
Confidence 432 21 111 11234799999999988766432 222211 124566776654321
Q ss_pred cceEEec----C--C-c--EEEecceec-ccccccccCCcCCcccCCHHHHHHHHHhhcCCCCccccccccCceEEecCC
Q 012375 324 QASLEIA----G--E-G--WFTLSKERF-QTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGS 393 (465)
Q Consensus 324 ~~~~~lp----d--~-~--~i~l~~er~-~~~E~LF~P~~~~~~~~~L~~~I~~sI~~~~~~dl~~r~~l~~NIvLtGG~ 393 (465)
...+.++ | | . .+.+..+.| ...+.+++ .+.+.|.+++.+... . ..-...|+|+||+
T Consensus 269 ~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~l~~---------~~~~~i~~~l~~a~~-~----~~~i~~V~LvGGs 334 (595)
T TIGR02350 269 STEINLPFITADASGPKHLEMTLTRAKFEELTADLVE---------RTKEPVRQALKDAGL-S----ASDIDEVILVGGS 334 (595)
T ss_pred ceEEEeeecccCCCCCeeEEEEEeHHHHHHHHHHHHH---------HHHHHHHHHHHHcCC-C----HhHCcEEEEECCc
Confidence 1111211 1 1 1 233333322 12222322 355667777776543 1 2335789999999
Q ss_pred CCccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhcC
Q 012375 394 ACLPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGNL 441 (465)
Q Consensus 394 S~ipGl~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilasl 441 (465)
|++|++.+.+++.+.. .+....++..++-.||++.|..
T Consensus 335 sriP~v~~~i~~~f~~----------~~~~~~~pdeava~GAa~~aa~ 372 (595)
T TIGR02350 335 TRIPAVQELVKDFFGK----------EPNKSVNPDEVVAIGAAIQGGV 372 (595)
T ss_pred ccChHHHHHHHHHhCC----------cccCCcCcHHHHHHHHHHHHHH
Confidence 9999999999987641 1223345567889999998753
No 29
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=99.20 E-value=9.3e-10 Score=121.42 Aligned_cols=211 Identities=17% Similarity=0.198 Sum_probs=131.1
Q ss_pred CCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhhccCCeEEEeecchHHHHhcCC-----CceEEEeecCceeEEEEEe
Q 012375 186 QPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKR-----TSGIVVNIGFQVTSVVPIL 260 (465)
Q Consensus 186 ~pVll~ep~~~~~~~~~~~~~R~~~~e~l~e~lFE~~vpav~~~~~~vlalya~g~-----~tglVVDiG~~~T~v~PV~ 260 (465)
..+|++.|.... ...|+.+++.. +. .|++-+.++++|.+|++++|. .+-+|+|+|+++++|+-+.
T Consensus 175 ~~~VITVPa~f~------~~qR~a~~~Aa-~~---AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~ 244 (663)
T PTZ00400 175 KQAVITVPAYFN------DSQRQATKDAG-KI---AGLDVLRIINEPTAAALAFGMDKNDGKTIAVYDLGGGTFDISILE 244 (663)
T ss_pred ceEEEEECCCCC------HHHHHHHHHHH-HH---cCCceEEEeCchHHHHHHhccccCCCcEEEEEeCCCCeEEEEEEE
Confidence 458999988764 45676665543 33 899999999999999999974 3579999999999998653
Q ss_pred --eCeeeccccEEEEeccHHHHHHHHHHHHHhc-----CCCCCc--------HHHHHHHHHhccccccchHHHhhccccc
Q 012375 261 --HGKVMRKVGVEVMGLGALKLTGYLRLLMQQN-----NINFGS--------LYTVRTLKEKLCYVAADYKAELSKDTQA 325 (465)
Q Consensus 261 --dG~vl~~~~~~~~~iGG~~lt~~L~~lL~~~-----~~~~~~--------~~~v~~iKe~~c~v~~d~~~e~~~~~~~ 325 (465)
+|..--.++.-...+||+++++.|.+.+..+ +.+... ...++.+|+.++.-. ..
T Consensus 245 ~~~g~~~v~a~~gd~~LGG~d~D~~l~~~l~~~f~~~~~~~~~~~~~a~~~L~~~aE~aK~~LS~~~-----------~~ 313 (663)
T PTZ00400 245 ILGGVFEVKATNGNTSLGGEDFDQRILNYLIAEFKKQQGIDLKKDKLALQRLREAAETAKIELSSKT-----------QT 313 (663)
T ss_pred ecCCeeEEEecccCCCcCHHHHHHHHHHHHHHHhhhhcCCCcccCHHHHHHHHHHHHHHHHHcCCCC-----------ce
Confidence 4543211112235799999999998776532 222211 123566676654311 11
Q ss_pred eEEec----C--C-c--EEEecceec-ccccccccCCcCCcccCCHHHHHHHHHhhcCCCCccccccccCceEEecCCCC
Q 012375 326 SLEIA----G--E-G--WFTLSKERF-QTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSAC 395 (465)
Q Consensus 326 ~~~lp----d--~-~--~i~l~~er~-~~~E~LF~P~~~~~~~~~L~~~I~~sI~~~~~~dl~~r~~l~~NIvLtGG~S~ 395 (465)
.+.++ | | . .+.+..+.| ...+.+|. .+.+.|.+++.+... . ..-...|+|+||+|+
T Consensus 314 ~i~i~~~~~d~~g~~~~~~~itR~efe~l~~~l~~---------~~~~~i~~~L~~a~~-~----~~~i~~ViLvGGssr 379 (663)
T PTZ00400 314 EINLPFITADQSGPKHLQIKLSRAKLEELTHDLLK---------KTIEPCEKCIKDAGV-K----KDELNDVILVGGMTR 379 (663)
T ss_pred EEEEEeeccCCCCceEEEEEECHHHHHHHHHHHHH---------HHHHHHHHHHHHcCC-C----HHHCcEEEEECCccC
Confidence 12221 1 1 1 233333322 12233332 255667777777654 2 233578999999999
Q ss_pred ccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhcC
Q 012375 396 LPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGNL 441 (465)
Q Consensus 396 ipGl~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilasl 441 (465)
+|++.++|++.+... +....+|..++=.||++.|..
T Consensus 380 iP~v~~~l~~~f~~~----------~~~~~npdeaVA~GAAi~aa~ 415 (663)
T PTZ00400 380 MPKVSETVKKIFGKE----------PSKGVNPDEAVAMGAAIQAGV 415 (663)
T ss_pred ChHHHHHHHHHhCCC----------cccCCCCccceeeccHHHHHh
Confidence 999999999887421 112234456777788888753
No 30
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=99.19 E-value=1.8e-09 Score=118.72 Aligned_cols=210 Identities=18% Similarity=0.199 Sum_probs=129.8
Q ss_pred CCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhhccCCeEEEeecchHHHHhcCC-----CceEEEeecCceeEEEEEe
Q 012375 186 QPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKR-----TSGIVVNIGFQVTSVVPIL 260 (465)
Q Consensus 186 ~pVll~ep~~~~~~~~~~~~~R~~~~e~l~e~lFE~~vpav~~~~~~vlalya~g~-----~tglVVDiG~~~T~v~PV~ 260 (465)
..+|++.|.... ...|+.+++ ..+. .|+.-+.++++|.+|++++|. .+-+|+|+|+++++|+-+-
T Consensus 161 ~~aVITVPayF~------~~qR~at~~-Aa~~---AGl~v~rlInEPtAAAlayg~~~~~~~~vlV~DlGGGT~DvSil~ 230 (657)
T PTZ00186 161 SNAVVTCPAYFN------DAQRQATKD-AGTI---AGLNVIRVVNEPTAAALAYGMDKTKDSLIAVYDLGGGTFDISVLE 230 (657)
T ss_pred ceEEEEECCCCC------hHHHHHHHH-HHHH---cCCCeEEEEcChHHHHHHHhccCCCCCEEEEEECCCCeEEEEEEE
Confidence 357888887653 456665544 3344 899999999999999999874 4579999999999998664
Q ss_pred --eCeeeccccEEEEeccHHHHHHHHHHHHHh-----cCCCCCc--------HHHHHHHHHhccccccchHHHhhccccc
Q 012375 261 --HGKVMRKVGVEVMGLGALKLTGYLRLLMQQ-----NNINFGS--------LYTVRTLKEKLCYVAADYKAELSKDTQA 325 (465)
Q Consensus 261 --dG~vl~~~~~~~~~iGG~~lt~~L~~lL~~-----~~~~~~~--------~~~v~~iKe~~c~v~~d~~~e~~~~~~~ 325 (465)
+|..--.++.-...+||.++++.|.+.+.. .+.+... ...++++|+.++.... .
T Consensus 231 ~~~g~~~V~at~Gd~~LGG~DfD~~l~~~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~-----------~ 299 (657)
T PTZ00186 231 IAGGVFEVKATNGDTHLGGEDFDLALSDYILEEFRKTSGIDLSKERMALQRVREAAEKAKCELSSAME-----------T 299 (657)
T ss_pred EeCCEEEEEEecCCCCCCchhHHHHHHHHHHHHHhhhcCCCcccCHHHHHHHHHHHHHHHHHhCCCCc-----------e
Confidence 454321111123579999999888776543 2222211 1345667766553211 1
Q ss_pred eEEec------CC---cEEEecceec-ccccccccCCcCCcccCCHHHHHHHHHhhcCCCCccccccccCceEEecCCCC
Q 012375 326 SLEIA------GE---GWFTLSKERF-QTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSAC 395 (465)
Q Consensus 326 ~~~lp------d~---~~i~l~~er~-~~~E~LF~P~~~~~~~~~L~~~I~~sI~~~~~~dl~~r~~l~~NIvLtGG~S~ 395 (465)
.+.+| +| -.+.|..+.| ...+.|++ .+.+.+.+++..... + ..-...|+|+||+|+
T Consensus 300 ~i~i~~i~~~~~g~~~~~~~ItR~efe~l~~~l~~---------r~~~~v~~~L~~a~~-~----~~dId~VvLVGGssr 365 (657)
T PTZ00186 300 EVNLPFITANADGAQHIQMHISRSKFEGITQRLIE---------RSIAPCKQCMKDAGV-E----LKEINDVVLVGGMTR 365 (657)
T ss_pred EEEEeeeccCCCCCcceEEEecHHHHHHHHHHHHH---------HHHHHHHHHHHHcCC-C----hhhCCEEEEECCccc
Confidence 11221 11 1234443333 22333333 244566667766544 2 233467999999999
Q ss_pred ccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhc
Q 012375 396 LPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGN 440 (465)
Q Consensus 396 ipGl~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilas 440 (465)
+|++.+.|.+.+... + . ...+|..++=+||+++|.
T Consensus 366 iP~V~~~l~~~fg~~-~------~---~~~nPdeaVA~GAAi~a~ 400 (657)
T PTZ00186 366 MPKVVEEVKKFFQKD-P------F---RGVNPDEAVALGAATLGG 400 (657)
T ss_pred ChHHHHHHHHHhCCC-c------c---ccCCCchHHHHhHHHHHH
Confidence 999999999877421 1 1 223456688889999886
No 31
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=99.18 E-value=1.5e-09 Score=118.15 Aligned_cols=204 Identities=18% Similarity=0.205 Sum_probs=129.5
Q ss_pred CCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhhccCCeEEEeecchHHHHhcCC-----CceEEEeecCceeEEEEEe
Q 012375 186 QPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKR-----TSGIVVNIGFQVTSVVPIL 260 (465)
Q Consensus 186 ~pVll~ep~~~~~~~~~~~~~R~~~~e~l~e~lFE~~vpav~~~~~~vlalya~g~-----~tglVVDiG~~~T~v~PV~ 260 (465)
..+|++.|.... ...|+.+++. .+. .|+.-+.++++|.+|++++|. .+-+|+|+|+++++|+-+-
T Consensus 142 ~~aVITVPa~f~------~~qR~a~~~A-a~~---AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSi~~ 211 (595)
T PRK01433 142 TKAVITVPAHFN------DAARGEVMLA-AKI---AGFEVLRLIAEPTAAAYAYGLNKNQKGCYLVYDLGGGTFDVSILN 211 (595)
T ss_pred ceEEEEECCCCC------HHHHHHHHHH-HHH---cCCCEEEEecCcHHHHHHHhcccCCCCEEEEEECCCCcEEEEEEE
Confidence 468999988764 4567666554 333 899999999999999999874 3459999999999987653
Q ss_pred --eCeeeccccEEEEeccHHHHHHHHHHHHHhcC-CCC--CcHHHHHHHHHhccccccchHHHhhccccceEEecCCcEE
Q 012375 261 --HGKVMRKVGVEVMGLGALKLTGYLRLLMQQNN-INF--GSLYTVRTLKEKLCYVAADYKAELSKDTQASLEIAGEGWF 335 (465)
Q Consensus 261 --dG~vl~~~~~~~~~iGG~~lt~~L~~lL~~~~-~~~--~~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~~~lpd~~~i 335 (465)
+|..---++--...+||+++++.|.+.+..+- ... .....++..|+.++.-. .+.. ..+
T Consensus 212 ~~~~~~~V~at~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~ekaK~~LS~~~-------------~~~~---~~~ 275 (595)
T PRK01433 212 IQEGIFQVIATNGDNMLGGNDIDVVITQYLCNKFDLPNSIDTLQLAKKAKETLTYKD-------------SFNN---DNI 275 (595)
T ss_pred EeCCeEEEEEEcCCcccChHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCc-------------cccc---ceE
Confidence 34321110112246999999999998876542 111 11234666676654211 0111 144
Q ss_pred Eecceec-ccccccccCCcCCcccCCHHHHHHHHHhhcCCCCccccccccCceEEecCCCCccchHHHHHHHHHhcCCCC
Q 012375 336 TLSKERF-QTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGLAERLEKELRGLLPSS 414 (465)
Q Consensus 336 ~l~~er~-~~~E~LF~P~~~~~~~~~L~~~I~~sI~~~~~~dl~~r~~l~~NIvLtGG~S~ipGl~eRL~~EL~~l~p~~ 414 (465)
.+..+.| ...+.+|+ .+.+.|.++++.... .+ ...|+|+||+|++|.+.++|++.+.
T Consensus 276 ~itr~efe~l~~~l~~---------~~~~~i~~~L~~a~~------~~-Id~ViLvGGssriP~v~~~l~~~f~------ 333 (595)
T PRK01433 276 SINKQTLEQLILPLVE---------RTINIAQECLEQAGN------PN-IDGVILVGGATRIPLIKDELYKAFK------ 333 (595)
T ss_pred EEcHHHHHHHHHHHHH---------HHHHHHHHHHhhcCc------cc-CcEEEEECCcccChhHHHHHHHHhC------
Confidence 4544333 12233333 244566666665442 12 3779999999999999999997763
Q ss_pred CCCceEEeCCCCCcchhhhhhHHhhcC
Q 012375 415 ISNGIRVIPPPYGADTAWFGAKLVGNL 441 (465)
Q Consensus 415 ~~~~v~v~~~~~~~~~aW~Ggsilasl 441 (465)
.++..+.+|..++=.||++.|..
T Consensus 334 ----~~~~~~~npdeaVA~GAAi~a~~ 356 (595)
T PRK01433 334 ----VDILSDIDPDKAVVWGAALQAEN 356 (595)
T ss_pred ----CCceecCCchHHHHHHHHHHHHH
Confidence 12233445677888999998764
No 32
>PRK13411 molecular chaperone DnaK; Provisional
Probab=99.18 E-value=1.3e-09 Score=120.07 Aligned_cols=210 Identities=18% Similarity=0.227 Sum_probs=128.3
Q ss_pred CCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhhccCCeEEEeecchHHHHhcCC------CceEEEeecCceeEEEEE
Q 012375 186 QPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKR------TSGIVVNIGFQVTSVVPI 259 (465)
Q Consensus 186 ~pVll~ep~~~~~~~~~~~~~R~~~~e~l~e~lFE~~vpav~~~~~~vlalya~g~------~tglVVDiG~~~T~v~PV 259 (465)
..++++.|.... ...|+.+++. .+. .|+.-+.++++|.+|++++|. .+-+|+|+|+++++|+-+
T Consensus 134 ~~~VITVPa~f~------~~qR~a~~~A-a~~---AGl~v~~li~EPtAAAl~y~~~~~~~~~~vlV~DlGgGT~dvsi~ 203 (653)
T PRK13411 134 TQAVITVPAYFT------DAQRQATKDA-GTI---AGLEVLRIINEPTAAALAYGLDKQDQEQLILVFDLGGGTFDVSIL 203 (653)
T ss_pred ceEEEEECCCCC------cHHHHHHHHH-HHH---cCCCeEEEecchHHHHHHhcccccCCCCEEEEEEcCCCeEEEEEE
Confidence 458899888764 4567766654 343 899999999999999998874 346999999999998755
Q ss_pred ee--Cee-eccccEEEEeccHHHHHHHHHHHHHhc-----CCCCCc--------HHHHHHHHHhccccccchHHHhhccc
Q 012375 260 LH--GKV-MRKVGVEVMGLGALKLTGYLRLLMQQN-----NINFGS--------LYTVRTLKEKLCYVAADYKAELSKDT 323 (465)
Q Consensus 260 ~d--G~v-l~~~~~~~~~iGG~~lt~~L~~lL~~~-----~~~~~~--------~~~v~~iKe~~c~v~~d~~~e~~~~~ 323 (465)
-- |.. +.. +.-...+||.++++.|.+.+..+ +..... ...++..|+.++...
T Consensus 204 ~~~~~~~~V~a-t~gd~~LGG~dfD~~l~~~l~~~f~~~~~~d~~~~~~~~~rL~~~aE~aK~~LS~~~----------- 271 (653)
T PRK13411 204 QLGDGVFEVKA-TAGNNHLGGDDFDNCIVDWLVENFQQQEGIDLSQDKMALQRLREAAEKAKIELSSML----------- 271 (653)
T ss_pred EEeCCEEEEEE-EecCCCcCHHHHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHhcCCCC-----------
Confidence 32 221 111 11224699999999888766432 222211 124556666654211
Q ss_pred cceEEec----C---Cc--EEEecceecc-cccccccCCcCCcccCCHHHHHHHHHhhcCCCCccccccccCceEEecCC
Q 012375 324 QASLEIA----G---EG--WFTLSKERFQ-TGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGS 393 (465)
Q Consensus 324 ~~~~~lp----d---~~--~i~l~~er~~-~~E~LF~P~~~~~~~~~L~~~I~~sI~~~~~~dl~~r~~l~~NIvLtGG~ 393 (465)
...+.+| | +. .+.|..+.|. ..+.+|+ .+.+.|.+++.+... . ..-...|+|+||+
T Consensus 272 ~~~i~i~~~~~d~~~~~~~~~~itR~~fe~l~~~l~~---------~~~~~i~~~L~~a~~-~----~~~id~ViLvGGs 337 (653)
T PRK13411 272 TTSINLPFITADETGPKHLEMELTRAKFEELTKDLVE---------ATIEPMQQALKDAGL-K----PEDIDRVILVGGS 337 (653)
T ss_pred ceEEEEeeeccCCCCCeeEEEEEcHHHHHHHHHHHHH---------HHHHHHHHHHHHcCC-C----HHHCcEEEEECCC
Confidence 1112221 1 11 2334333321 2222222 255667777776654 2 2334789999999
Q ss_pred CCccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhc
Q 012375 394 ACLPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGN 440 (465)
Q Consensus 394 S~ipGl~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilas 440 (465)
|++|.+.++|++.+... .+..+.++..++=.||++.|.
T Consensus 338 sriP~v~~~l~~~f~~~---------~~~~~~npdeaVA~GAAi~aa 375 (653)
T PRK13411 338 TRIPAVQEAIQKFFGGK---------QPDRSVNPDEAVALGAAIQAG 375 (653)
T ss_pred CCcchHHHHHHHHcCCc---------CcCCCCCchHHHHHHHHHHHH
Confidence 99999999998776421 122233456678889999875
No 33
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=99.16 E-value=2.7e-09 Score=117.72 Aligned_cols=211 Identities=20% Similarity=0.227 Sum_probs=130.2
Q ss_pred CCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhhccCCeEEEeecchHHHHhcCC-------CceEEEeecCceeEEEE
Q 012375 186 QPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKR-------TSGIVVNIGFQVTSVVP 258 (465)
Q Consensus 186 ~pVll~ep~~~~~~~~~~~~~R~~~~e~l~e~lFE~~vpav~~~~~~vlalya~g~-------~tglVVDiG~~~T~v~P 258 (465)
..++++.|.... ...|+.+++ .++. .|+.-+.++++|.+|++++|. .+-+|+|+|+++++|+-
T Consensus 141 ~~~VItVPa~f~------~~qR~a~~~-Aa~~---AGl~v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dvsv 210 (653)
T PTZ00009 141 KDAVVTVPAYFN------DSQRQATKD-AGTI---AGLNVLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSL 210 (653)
T ss_pred ceeEEEeCCCCC------HHHHHHHHH-HHHH---cCCceeEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEEEE
Confidence 458999988764 456666554 3344 899999999999999998863 35799999999999876
Q ss_pred Ee--eCeeeccccEEEEeccHHHHHHHHHHHHHhc------CCCCCc--------HHHHHHHHHhccccccchHHHhhcc
Q 012375 259 IL--HGKVMRKVGVEVMGLGALKLTGYLRLLMQQN------NINFGS--------LYTVRTLKEKLCYVAADYKAELSKD 322 (465)
Q Consensus 259 V~--dG~vl~~~~~~~~~iGG~~lt~~L~~lL~~~------~~~~~~--------~~~v~~iKe~~c~v~~d~~~e~~~~ 322 (465)
+- +|..--.++.-...+||+++++.|.+.+.++ +..+.. ...++.+|+.++...
T Consensus 211 ~~~~~~~~~v~a~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~aEkaK~~LS~~~---------- 280 (653)
T PTZ00009 211 LTIEDGIFEVKATAGDTHLGGEDFDNRLVEFCVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSST---------- 280 (653)
T ss_pred EEEeCCeEEEEEecCCCCCChHHHHHHHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHHhCCCCc----------
Confidence 54 3432111011234799999999888766432 122211 124566666654211
Q ss_pred ccceEEec---CCc--EEEecceecc-cccccccCCcCCcccCCHHHHHHHHHhhcCCCCccccccccCceEEecCCCCc
Q 012375 323 TQASLEIA---GEG--WFTLSKERFQ-TGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACL 396 (465)
Q Consensus 323 ~~~~~~lp---d~~--~i~l~~er~~-~~E~LF~P~~~~~~~~~L~~~I~~sI~~~~~~dl~~r~~l~~NIvLtGG~S~i 396 (465)
...+.++ ++. .+.+..+.|. ..+.+|+ .+.+.|.+++.++.. + ..-...|+|+||+|++
T Consensus 281 -~~~i~i~~~~~~~d~~~~itR~~fe~l~~~l~~---------~~~~~i~~~L~~a~~-~----~~~i~~ViLvGGssri 345 (653)
T PTZ00009 281 -QATIEIDSLFEGIDYNVTISRARFEELCGDYFR---------NTLQPVEKVLKDAGM-D----KRSVHEVVLVGGSTRI 345 (653)
T ss_pred -eEEEEEEeccCCceEEEEECHHHHHHHHHHHHH---------HHHHHHHHHHHHcCC-C----HHHCcEEEEECCCCCC
Confidence 1122222 222 2344433332 2333333 245667777777654 2 2334789999999999
Q ss_pred cchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhc
Q 012375 397 PGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGN 440 (465)
Q Consensus 397 pGl~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilas 440 (465)
|.+.++|++.+... .+....++..++=.||++.|.
T Consensus 346 P~v~~~i~~~f~~~---------~~~~~~npdeaVA~GAa~~aa 380 (653)
T PTZ00009 346 PKVQSLIKDFFNGK---------EPCKSINPDEAVAYGAAVQAA 380 (653)
T ss_pred hhHHHHHHHHhCCC---------CCCCCCCcchHHhhhhhhhHH
Confidence 99999998776421 112223445677789888865
No 34
>PLN03184 chloroplast Hsp70; Provisional
Probab=99.15 E-value=2.7e-09 Score=117.82 Aligned_cols=210 Identities=18% Similarity=0.188 Sum_probs=128.2
Q ss_pred CCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhhccCCeEEEeecchHHHHhcCC-----CceEEEeecCceeEEEEEe
Q 012375 186 QPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKR-----TSGIVVNIGFQVTSVVPIL 260 (465)
Q Consensus 186 ~pVll~ep~~~~~~~~~~~~~R~~~~e~l~e~lFE~~vpav~~~~~~vlalya~g~-----~tglVVDiG~~~T~v~PV~ 260 (465)
..+|++.|.... ...|+.+++.. +. .|+.-+.++++|.+|++++|. ..-+|+|+|+++++|+-+.
T Consensus 173 ~~~VITVPa~f~------~~qR~a~~~Aa-~~---AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~DvSi~~ 242 (673)
T PLN03184 173 TKAVITVPAYFN------DSQRTATKDAG-RI---AGLEVLRIINEPTAASLAYGFEKKSNETILVFDLGGGTFDVSVLE 242 (673)
T ss_pred CeEEEEECCCCC------HHHHHHHHHHH-HH---CCCCeEEEeCcHHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEE
Confidence 468999988764 45666655533 33 899999999999999998874 3579999999999987764
Q ss_pred eCeeecc--ccEEEEeccHHHHHHHHHHHHHhc-----CCCCC-c-------HHHHHHHHHhccccccchHHHhhccccc
Q 012375 261 HGKVMRK--VGVEVMGLGALKLTGYLRLLMQQN-----NINFG-S-------LYTVRTLKEKLCYVAADYKAELSKDTQA 325 (465)
Q Consensus 261 dG~vl~~--~~~~~~~iGG~~lt~~L~~lL~~~-----~~~~~-~-------~~~v~~iKe~~c~v~~d~~~e~~~~~~~ 325 (465)
-+..... ++.-...+||.++++.|.+.+..+ +.+.. . ...+|.+|+.++... ..
T Consensus 243 ~~~~~~eVla~~gd~~LGG~dfD~~L~~~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~-----------~~ 311 (673)
T PLN03184 243 VGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLT-----------QT 311 (673)
T ss_pred ecCCEEEEEEecCCCccCHHHHHHHHHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHHHHHhcCCCC-----------cc
Confidence 3321111 011235799999999998776432 22211 1 123566666654321 11
Q ss_pred eEEec------CC-cE--EEecceecc-cccccccCCcCCcccCCHHHHHHHHHhhcCCCCccccccccCceEEecCCCC
Q 012375 326 SLEIA------GE-GW--FTLSKERFQ-TGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSAC 395 (465)
Q Consensus 326 ~~~lp------d~-~~--i~l~~er~~-~~E~LF~P~~~~~~~~~L~~~I~~sI~~~~~~dl~~r~~l~~NIvLtGG~S~ 395 (465)
.+.++ ++ .. +.|..+.|. ..+.+++ .+.+.|.+++..... +. .=...|+|+||+|+
T Consensus 312 ~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~---------r~~~~i~~~L~~a~~-~~----~dId~ViLvGGssr 377 (673)
T PLN03184 312 SISLPFITATADGPKHIDTTLTRAKFEELCSDLLD---------RCKTPVENALRDAKL-SF----KDIDEVILVGGSTR 377 (673)
T ss_pred eEEEEeeeccCCCCceEEEEECHHHHHHHHHHHHH---------HHHHHHHHHHHHcCC-Ch----hHccEEEEECCccc
Confidence 12221 11 12 223333221 2222322 245566677766654 22 23378999999999
Q ss_pred ccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhc
Q 012375 396 LPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGN 440 (465)
Q Consensus 396 ipGl~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilas 440 (465)
+|.+.++|.+.+... +. ...++..++=.||++.|.
T Consensus 378 iP~V~~~i~~~fg~~--------~~--~~~npdeaVA~GAAi~aa 412 (673)
T PLN03184 378 IPAVQELVKKLTGKD--------PN--VTVNPDEVVALGAAVQAG 412 (673)
T ss_pred cHHHHHHHHHHhCCC--------cc--cccCcchHHHHHHHHHHH
Confidence 999999999877421 11 122345678889998875
No 35
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=99.04 E-value=9.3e-09 Score=112.36 Aligned_cols=212 Identities=17% Similarity=0.134 Sum_probs=130.7
Q ss_pred CCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhhccCCeEEEeecchHHHHhcCC-----CceEEEeecCceeEEEEEe
Q 012375 186 QPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKR-----TSGIVVNIGFQVTSVVPIL 260 (465)
Q Consensus 186 ~pVll~ep~~~~~~~~~~~~~R~~~~e~l~e~lFE~~vpav~~~~~~vlalya~g~-----~tglVVDiG~~~T~v~PV~ 260 (465)
..+|++.|.... ...|+.+++. ++. .|+.-+.++++|.+|++++|. .+-+|+|+|+++++|+-+-
T Consensus 130 ~~~VItVPa~f~------~~qR~a~~~A-a~~---AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGgGT~DvSi~~ 199 (599)
T TIGR01991 130 VGAVITVPAYFD------DAQRQATKDA-ARL---AGLNVLRLLNEPTAAAVAYGLDKASEGIYAVYDLGGGTFDVSILK 199 (599)
T ss_pred ceEEEEECCCCC------HHHHHHHHHH-HHH---cCCCceEEecCHHHHHHHHhhccCCCCEEEEEEcCCCeEEEEEEE
Confidence 468999888764 4567665554 333 899999999999999988863 4569999999999998654
Q ss_pred --eCeeeccccEEEEeccHHHHHHHHHHHHHhc-CCCC-CcH-------HHHHHHHHhccccccchHHHhhccccceEEe
Q 012375 261 --HGKVMRKVGVEVMGLGALKLTGYLRLLMQQN-NINF-GSL-------YTVRTLKEKLCYVAADYKAELSKDTQASLEI 329 (465)
Q Consensus 261 --dG~vl~~~~~~~~~iGG~~lt~~L~~lL~~~-~~~~-~~~-------~~v~~iKe~~c~v~~d~~~e~~~~~~~~~~l 329 (465)
+|..---++.....+||.++++.|.+.+.++ +... .+. ..++.+|+.++.-.. ....++.
T Consensus 200 ~~~~~~~vla~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~---------~~i~i~~ 270 (599)
T TIGR01991 200 LTKGVFEVLATGGDSALGGDDFDHALAKWILKQLGISADLNPEDQRLLLQAARAAKEALTDAES---------VEVDFTL 270 (599)
T ss_pred EcCCeEEEEEEcCCCCCCHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHhCCCCce---------EEEEEEE
Confidence 3322100011224799999999999887543 3321 111 234555655432110 0111222
Q ss_pred cCCc--EEEecceec-ccccccccCCcCCcccCCHHHHHHHHHhhcCCCCccccccccCceEEecCCCCccchHHHHHHH
Q 012375 330 AGEG--WFTLSKERF-QTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGLAERLEKE 406 (465)
Q Consensus 330 pd~~--~i~l~~er~-~~~E~LF~P~~~~~~~~~L~~~I~~sI~~~~~~dl~~r~~l~~NIvLtGG~S~ipGl~eRL~~E 406 (465)
+ |. .+.++.+.| .+.+.+++ .+.+.|.+++++... . ..-...|+|+||+|++|++.++|++.
T Consensus 271 ~-g~~~~~~itr~efe~l~~~ll~---------~i~~~i~~~L~~a~~-~----~~~id~ViLvGGssriP~V~~~l~~~ 335 (599)
T TIGR01991 271 D-GKDFKGKLTRDEFEALIQPLVQ---------KTLSICRRALRDAGL-S----VEEIKGVVLVGGSTRMPLVRRAVAEL 335 (599)
T ss_pred C-CcEEEEEEeHHHHHHHHHHHHH---------HHHHHHHHHHHHcCC-C----hhhCCEEEEECCcCCChHHHHHHHHH
Confidence 2 32 233433332 12222322 355667777776543 1 23357899999999999999999987
Q ss_pred HHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhcC
Q 012375 407 LRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGNL 441 (465)
Q Consensus 407 L~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilasl 441 (465)
+... +....+|..++=.||++.|..
T Consensus 336 f~~~----------~~~~~npdeaVA~GAai~a~~ 360 (599)
T TIGR01991 336 FGQE----------PLTDIDPDQVVALGAAIQADL 360 (599)
T ss_pred hCCC----------CCCCCCCcHHHHHHHHHHHHH
Confidence 6421 122345567888999998864
No 36
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=99.02 E-value=1.8e-09 Score=111.33 Aligned_cols=172 Identities=16% Similarity=0.171 Sum_probs=111.0
Q ss_pred HHHHHHHHHhhccCCeEEEeecchHHHHhcCC-----CceEEEeecCceeEEEEEeeCeeeccccEEEEeccHHHHHHHH
Q 012375 210 LKDCFQQVLFDLNVPAVCAINQATLALYAAKR-----TSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYL 284 (465)
Q Consensus 210 ~~e~l~e~lFE~~vpav~~~~~~vlalya~g~-----~tglVVDiG~~~T~v~PV~dG~vl~~~~~~~~~iGG~~lt~~L 284 (465)
+.+.+.+.+-+.|..-..+..+|+++++++.. ...+|||+|+++|+++.+.+|..... +.+++||+++|+.+
T Consensus 159 ~v~~~~~~~~~aGl~~~~i~~~~~A~a~a~~~~~~~~~~~~vvDiG~gtt~i~i~~~g~~~~~---~~i~~GG~~it~~i 235 (371)
T TIGR01174 159 ILRNLVKCVERCGLEVDNIVLSGLASAIAVLTEDEKELGVCLIDIGGGTTDIAVYTGGSIRYT---KVIPIGGNHITKDI 235 (371)
T ss_pred HHHHHHHHHHHcCCCeeeEEEhhhhhhhhhcCcchhcCCEEEEEeCCCcEEEEEEECCEEEEE---eeecchHHHHHHHH
Confidence 34444443323888888889999999988742 34699999999999999999987653 66899999999998
Q ss_pred HHHHHhcCCCCCcHHHHHHHHHhccccccchHHHhhccccceEEecC---CcEEEecceec-ccccccccCCcCCcccCC
Q 012375 285 RLLMQQNNINFGSLYTVRTLKEKLCYVAADYKAELSKDTQASLEIAG---EGWFTLSKERF-QTGEILFQPRMADVRTMG 360 (465)
Q Consensus 285 ~~lL~~~~~~~~~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~~~lpd---~~~i~l~~er~-~~~E~LF~P~~~~~~~~~ 360 (465)
.+.+.. +...+|++|.+++....+.. .....++++. +....++.+.+ .+.+.++ ..
T Consensus 236 ~~~l~~------~~~~AE~lK~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~~is~~~l~~ii~~~~---------~e 295 (371)
T TIGR01174 236 AKALRT------PLEEAERIKIKYGCASIPLE-----GPDENIEIPSVGERPPRSLSRKELAEIIEARA---------EE 295 (371)
T ss_pred HHHhCC------CHHHHHHHHHHeeEecccCC-----CCCCEEEeccCCCCCCeEEcHHHHHHHHHHHH---------HH
Confidence 775532 46789999999887543210 0112233321 11122221110 0111111 12
Q ss_pred HHHHHH-HHHhhcCCCCccccccccCceEEecCCCCccchHHHHHHHHHh
Q 012375 361 LDQAVA-LCMDHCHYAELSGDDAWFKTVILTGGSACLPGLAERLEKELRG 409 (465)
Q Consensus 361 L~~~I~-~sI~~~~~~dl~~r~~l~~NIvLtGG~S~ipGl~eRL~~EL~~ 409 (465)
+.+.|. +.+++.+. + ..+-+.|+||||+|++||+.+++.+.+..
T Consensus 296 i~~~i~~~~L~~~~~-~----~~i~~gIvLtGG~S~ipgi~~~l~~~~~~ 340 (371)
T TIGR01174 296 ILEIVKQKELRKSGF-K----EELNGGIVLTGGGAQLEGIVELAEKVFDN 340 (371)
T ss_pred HHHHHHHHHHHhcCC-c----ccCCCEEEEeChHHcccCHHHHHHHHhCC
Confidence 455554 66665543 1 23434499999999999999999998853
No 37
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=99.02 E-value=2.9e-09 Score=111.60 Aligned_cols=189 Identities=17% Similarity=0.139 Sum_probs=122.0
Q ss_pred ccCCeEEEeecchHHHHhcCC-----CceEEEeecCceeEEEEEeeCeeeccccEEEEeccHHHHHHHHHHHHHhcCCCC
Q 012375 221 LNVPAVCAINQATLALYAAKR-----TSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINF 295 (465)
Q Consensus 221 ~~vpav~~~~~~vlalya~g~-----~tglVVDiG~~~T~v~PV~dG~vl~~~~~~~~~iGG~~lt~~L~~lL~~~~~~~ 295 (465)
.|..-..++.+|+++++++.. ...+|||+|+++|+++-+.+|.+... ..+++||+++|+.+...|.-
T Consensus 178 aGl~v~~iv~ep~Aaa~a~l~~~e~~~gv~vvDiGggtTdisv~~~G~l~~~---~~i~~GG~~it~dIa~~l~i----- 249 (420)
T PRK09472 178 CGLKVDQLIFAGLASSYAVLTEDERELGVCVVDIGGGTMDIAVYTGGALRHT---KVIPYAGNVVTSDIAYAFGT----- 249 (420)
T ss_pred cCCeEeeEEehhhHHHHHhcChhhhhcCeEEEEeCCCceEEEEEECCEEEEE---eeeechHHHHHHHHHHHhCc-----
Confidence 788888888999999998753 34799999999999999999988754 67899999999999876632
Q ss_pred CcHHHHHHHHHhccccccchHHHhhccccceEEecC--Cc-EEEecceecccccccccCCcCCcccCCHHHHHHHHHhhc
Q 012375 296 GSLYTVRTLKEKLCYVAADYKAELSKDTQASLEIAG--EG-WFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHC 372 (465)
Q Consensus 296 ~~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~~~lpd--~~-~i~l~~er~~~~E~LF~P~~~~~~~~~L~~~I~~sI~~~ 372 (465)
+...+|.+|.+++....+... ....+++++ +. ...++ +....|++-. ....|-+.|.++++.+
T Consensus 250 -~~~~AE~lK~~~g~~~~~~~~-----~~~~i~v~~~~~~~~~~i~--~~~l~~ii~~------r~~ei~~~i~~~l~~~ 315 (420)
T PRK09472 250 -PPSDAEAIKVRHGCALGSIVG-----KDESVEVPSVGGRPPRSLQ--RQTLAEVIEP------RYTELLNLVNEEILQL 315 (420)
T ss_pred -CHHHHHHHHHhcceeccccCC-----CCceeEecCCCCCCCeEEc--HHHHHHHHHH------HHHHHHHHHHHHHHHH
Confidence 468899999887654322110 011233321 10 01111 1111111111 0112444566666555
Q ss_pred CCCCccc---cccccCceEEecCCCCccchHHHHHHHHHhcCCCCCCCceEEeCC----------CCCcchhhhhhHHhh
Q 012375 373 HYAELSG---DDAWFKTVILTGGSACLPGLAERLEKELRGLLPSSISNGIRVIPP----------PYGADTAWFGAKLVG 439 (465)
Q Consensus 373 ~~~dl~~---r~~l~~NIvLtGG~S~ipGl~eRL~~EL~~l~p~~~~~~v~v~~~----------~~~~~~aW~Ggsila 439 (465)
+. ++.. ...+.+.|+||||+|++||+.+.+++.+..- +++-.| .+|.|++=+|..+++
T Consensus 316 ~~-~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~~~--------vri~~P~~~~g~~~~~~~P~~ata~Gl~~~~ 386 (420)
T PRK09472 316 QE-QLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHTQ--------VRIGAPLNITGLTDYAQEPYYSTAVGLLHYG 386 (420)
T ss_pred HH-HHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhCCC--------eEEeCCcccCCChhhcCCcHHHHHHHHHHHh
Confidence 43 3210 1346678999999999999999999887521 333221 256899999988886
Q ss_pred c
Q 012375 440 N 440 (465)
Q Consensus 440 s 440 (465)
.
T Consensus 387 ~ 387 (420)
T PRK09472 387 K 387 (420)
T ss_pred h
Confidence 5
No 38
>PRK13410 molecular chaperone DnaK; Provisional
Probab=99.01 E-value=1.3e-08 Score=112.27 Aligned_cols=209 Identities=15% Similarity=0.179 Sum_probs=126.6
Q ss_pred CeEEEecCCCCCCccchHHhHHHHHHHHHHHHhhccCCeEEEeecchHHHHhcCC-----CceEEEeecCceeEEEEEe-
Q 012375 187 PIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKR-----TSGIVVNIGFQVTSVVPIL- 260 (465)
Q Consensus 187 pVll~ep~~~~~~~~~~~~~R~~~~e~l~e~lFE~~vpav~~~~~~vlalya~g~-----~tglVVDiG~~~T~v~PV~- 260 (465)
.+|++.|...+ ...|+.+++. ++. .|+.-+.++++|.||++++|. .+-+|+|+|+++++|+-+.
T Consensus 137 ~~VITVPa~f~------~~qR~a~~~A-a~~---AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~Dvsv~~~ 206 (668)
T PRK13410 137 GAVITVPAYFN------DSQRQATRDA-GRI---AGLEVERILNEPTAAALAYGLDRSSSQTVLVFDLGGGTFDVSLLEV 206 (668)
T ss_pred eEEEEECCCCC------HHHHHHHHHH-HHH---cCCCeEEEecchHHHHHHhccccCCCCEEEEEECCCCeEEEEEEEE
Confidence 58999988764 4566665554 344 899999999999999999874 4579999999999988665
Q ss_pred -eCee-eccccEEEEeccHHHHHHHHHHHHHhc-----CCCCCc--------HHHHHHHHHhccccccchHHHhhccccc
Q 012375 261 -HGKV-MRKVGVEVMGLGALKLTGYLRLLMQQN-----NINFGS--------LYTVRTLKEKLCYVAADYKAELSKDTQA 325 (465)
Q Consensus 261 -dG~v-l~~~~~~~~~iGG~~lt~~L~~lL~~~-----~~~~~~--------~~~v~~iKe~~c~v~~d~~~e~~~~~~~ 325 (465)
+|.. +.. +.-...+||.++++.|.+.+..+ +..... ...++.+|+.++... ..
T Consensus 207 ~~g~~~V~a-t~gd~~lGG~dfD~~l~~~l~~~f~~~~~~d~~~~~~a~~rL~~~aEkaK~~LS~~~-----------~~ 274 (668)
T PRK13410 207 GNGVFEVKA-TSGDTQLGGNDFDKRIVDWLAEQFLEKEGIDLRRDRQALQRLTEAAEKAKIELSGVS-----------VT 274 (668)
T ss_pred cCCeEEEEE-eecCCCCChhHHHHHHHHHHHHHHHhhhCCCcccCHHHHHHHHHHHHHHHHhcCCCC-----------ce
Confidence 2322 111 12234799999999888766432 222211 123556666654221 11
Q ss_pred eEEec------CC-c--EEEecceec-ccccccccCCcCCcccCCHHHHHHHHHhhcCCCCccccccccCceEEecCCCC
Q 012375 326 SLEIA------GE-G--WFTLSKERF-QTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSAC 395 (465)
Q Consensus 326 ~~~lp------d~-~--~i~l~~er~-~~~E~LF~P~~~~~~~~~L~~~I~~sI~~~~~~dl~~r~~l~~NIvLtGG~S~ 395 (465)
.+.+| ++ . .+.+..+.| ...+.++. .+.+.|.+++.+... ...-...|+|+||+|+
T Consensus 275 ~i~i~~~~~~~~g~~~~~~~itR~~FE~l~~~l~~---------r~~~~i~~~L~~ag~-----~~~dId~VvLVGGssR 340 (668)
T PRK13410 275 DISLPFITATEDGPKHIETRLDRKQFESLCGDLLD---------RLLRPVKRALKDAGL-----SPEDIDEVVLVGGSTR 340 (668)
T ss_pred EEEEeeeecCCCCCeeEEEEECHHHHHHHHHHHHH---------HHHHHHHHHHHHcCC-----ChhhCcEEEEECCccc
Confidence 12222 11 1 122332222 12222322 355666666665443 1234468999999999
Q ss_pred ccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhcC
Q 012375 396 LPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGNL 441 (465)
Q Consensus 396 ipGl~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilasl 441 (465)
+|.+.+.+++.+... +....++..++=+||++.|..
T Consensus 341 iP~V~~~l~~~fg~~----------~~~~~npdeaVA~GAAi~aa~ 376 (668)
T PRK13410 341 MPMVQQLVRTLIPRE----------PNQNVNPDEVVAVGAAIQAGI 376 (668)
T ss_pred cHHHHHHHHHHcCCC----------cccCCCCchHHHHhHHHHHHh
Confidence 999999998765321 112223456788899998764
No 39
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=98.98 E-value=2.2e-08 Score=109.76 Aligned_cols=209 Identities=17% Similarity=0.142 Sum_probs=126.8
Q ss_pred CCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhhccCCeEEEeecchHHHHhcCC-----CceEEEeecCceeEEEEEe
Q 012375 186 QPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKR-----TSGIVVNIGFQVTSVVPIL 260 (465)
Q Consensus 186 ~pVll~ep~~~~~~~~~~~~~R~~~~e~l~e~lFE~~vpav~~~~~~vlalya~g~-----~tglVVDiG~~~T~v~PV~ 260 (465)
..++++.|.... ...|+.+++. .+. .|++-+.++++|.+|++++|. .+-+|+|+|+++++|+.+-
T Consensus 150 ~~~VITVPa~f~------~~qR~a~~~A-a~~---AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSv~~ 219 (616)
T PRK05183 150 DGAVITVPAYFD------DAQRQATKDA-ARL---AGLNVLRLLNEPTAAAIAYGLDSGQEGVIAVYDLGGGTFDISILR 219 (616)
T ss_pred ceEEEEECCCCC------HHHHHHHHHH-HHH---cCCCeEEEecchHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEE
Confidence 458899887763 4566665554 333 899999999999999988763 3468999999999988664
Q ss_pred --eCee-eccccEEEEeccHHHHHHHHHHHHHhc-CCCC-CcH-------HHHHHHHHhccccccchHHHhhccccceEE
Q 012375 261 --HGKV-MRKVGVEVMGLGALKLTGYLRLLMQQN-NINF-GSL-------YTVRTLKEKLCYVAADYKAELSKDTQASLE 328 (465)
Q Consensus 261 --dG~v-l~~~~~~~~~iGG~~lt~~L~~lL~~~-~~~~-~~~-------~~v~~iKe~~c~v~~d~~~e~~~~~~~~~~ 328 (465)
+|.. +.. +.....+||.++++.|.+.+.++ +... .+. ..++..|+.++.- ....+.
T Consensus 220 ~~~~~~evla-t~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~-----------~~~~i~ 287 (616)
T PRK05183 220 LSKGVFEVLA-TGGDSALGGDDFDHLLADWILEQAGLSPRLDPEDQRLLLDAARAAKEALSDA-----------DSVEVS 287 (616)
T ss_pred eeCCEEEEEE-ecCCCCcCHHHHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHHHHhcCCC-----------ceEEEE
Confidence 2321 111 11234699999999998877553 2222 111 2244555544321 112233
Q ss_pred ecCCcEEEecceec-ccccccccCCcCCcccCCHHHHHHHHHhhcCCCCccccccccCceEEecCCCCccchHHHHHHHH
Q 012375 329 IAGEGWFTLSKERF-QTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGLAERLEKEL 407 (465)
Q Consensus 329 lpd~~~i~l~~er~-~~~E~LF~P~~~~~~~~~L~~~I~~sI~~~~~~dl~~r~~l~~NIvLtGG~S~ipGl~eRL~~EL 407 (465)
+++-. -.+..+.| ...+.++. .+.+.|.+++.+... . ..-...|+|+||+|++|++.++|.+.+
T Consensus 288 i~~~~-~~itr~efe~l~~~l~~---------~~~~~i~~~L~~a~~-~----~~~i~~ViLvGGssriP~v~~~l~~~f 352 (616)
T PRK05183 288 VALWQ-GEITREQFNALIAPLVK---------RTLLACRRALRDAGV-E----ADEVKEVVMVGGSTRVPLVREAVGEFF 352 (616)
T ss_pred EecCC-CeEcHHHHHHHHHHHHH---------HHHHHHHHHHHHcCC-C----cccCCEEEEECCcccChHHHHHHHHHh
Confidence 32210 01222211 11222222 255566667766543 1 223478999999999999999999876
Q ss_pred HhcCCCCCCCceEEeCCCCCcchhhhhhHHhhcC
Q 012375 408 RGLLPSSISNGIRVIPPPYGADTAWFGAKLVGNL 441 (465)
Q Consensus 408 ~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilasl 441 (465)
... +..+.+|..++=.||++.|..
T Consensus 353 g~~----------~~~~~npdeaVA~GAAi~a~~ 376 (616)
T PRK05183 353 GRT----------PLTSIDPDKVVAIGAAIQADI 376 (616)
T ss_pred ccC----------cCcCCCchHHHHHHHHHHHHH
Confidence 421 122345567888899998763
No 40
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=98.87 E-value=4.5e-08 Score=107.11 Aligned_cols=211 Identities=19% Similarity=0.258 Sum_probs=127.3
Q ss_pred CeEEEecCCCCCCccchHHhHHHHHHHHHHHHhhccCCeEEEeecchHHHHhcCC------CceEEEeecCceeEEEEEe
Q 012375 187 PIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKR------TSGIVVNIGFQVTSVVPIL 260 (465)
Q Consensus 187 pVll~ep~~~~~~~~~~~~~R~~~~e~l~e~lFE~~vpav~~~~~~vlalya~g~------~tglVVDiG~~~T~v~PV~ 260 (465)
.++++.|...+ ...|+.+++.+-. .|++-+.++++|.||+++++. .+-+|+|+|+++++|+-+-
T Consensus 137 ~~vitVPa~~~------~~qr~~~~~Aa~~----agl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~Gggt~dvs~~~ 206 (602)
T PF00012_consen 137 DVVITVPAYFT------DEQRQALRDAAEL----AGLNVLRLINEPTAAALAYGLERSDKGKTVLVVDFGGGTFDVSVVE 206 (602)
T ss_dssp EEEEEE-TT--------HHHHHHHHHHHHH----TT-EEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEEESSEEEEEEEE
T ss_pred cceeeechhhh------hhhhhcccccccc----cccccceeecccccccccccccccccccceeccccccceEeeeehh
Confidence 48999988764 5667666554433 888889999999999987763 3669999999999888664
Q ss_pred --eCeeeccccEEEEeccHHHHHHHHHHHHHhc-----CCCCC-c-------HHHHHHHHHhccccccchHHHhhccccc
Q 012375 261 --HGKVMRKVGVEVMGLGALKLTGYLRLLMQQN-----NINFG-S-------LYTVRTLKEKLCYVAADYKAELSKDTQA 325 (465)
Q Consensus 261 --dG~vl~~~~~~~~~iGG~~lt~~L~~lL~~~-----~~~~~-~-------~~~v~~iKe~~c~v~~d~~~e~~~~~~~ 325 (465)
+|..--........+||+++++.|.+.+..+ +.... . ...++.+|+.++.... ...
T Consensus 207 ~~~~~~~v~~~~~~~~lGG~~~D~~l~~~~~~~~~~~~~~d~~~~~~~~~~L~~~~e~~K~~Ls~~~~---------~~~ 277 (602)
T PF00012_consen 207 FSNGQFEVLATAGDNNLGGRDFDEALAEYLLEKFKKKYKIDLRENPRAMARLLEAAEKAKEQLSSNDN---------TEI 277 (602)
T ss_dssp EETTEEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHHSS-GTCSHHHHHHHHHHHHHHHHHTTTSSS---------SEE
T ss_pred cccccccccccccccccccceecceeeccccccccccccccccccccccccccccccccccccccccc---------ccc
Confidence 3432111122335799999999998877542 22221 1 1245666666543110 001
Q ss_pred eEE---ecC-Cc--EEEecceecc-cccccccCCcCCcccCCHHHHHHHHHhhcCCCCccccccccCceEEecCCCCccc
Q 012375 326 SLE---IAG-EG--WFTLSKERFQ-TGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPG 398 (465)
Q Consensus 326 ~~~---lpd-~~--~i~l~~er~~-~~E~LF~P~~~~~~~~~L~~~I~~sI~~~~~~dl~~r~~l~~NIvLtGG~S~ipG 398 (465)
.+. +.+ |. .+.+..+.|. ..+.+++ .+.++|.+++.++.. . ..=...|+|+||+|++|.
T Consensus 278 ~~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~---------~~~~~i~~~l~~~~~-~----~~~i~~V~lvGG~sr~p~ 343 (602)
T PF00012_consen 278 TISIESLYDDGEDFSITITREEFEELCEPLLE---------RIIEPIEKALKDAGL-K----KEDIDSVLLVGGSSRIPY 343 (602)
T ss_dssp EEEEEEEETTTEEEEEEEEHHHHHHHTHHHHH---------HTHHHHHHHHHHTT-------GGGESEEEEESGGGGSHH
T ss_pred ccccccccccccccccccccceeccccccccc---------ccccccccccccccc-c----ccccceeEEecCcccchh
Confidence 111 112 32 2344433332 2333333 356778888877654 2 223467999999999999
Q ss_pred hHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhc
Q 012375 399 LAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGN 440 (465)
Q Consensus 399 l~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilas 440 (465)
+.++|++.+.. .+....++..++=.||+++|.
T Consensus 344 v~~~l~~~f~~----------~~~~~~~p~~aVA~GAa~~a~ 375 (602)
T PF00012_consen 344 VQEALKELFGK----------KISKSVNPDEAVARGAALYAA 375 (602)
T ss_dssp HHHHHHHHTTS----------EEB-SS-TTTHHHHHHHHHHH
T ss_pred hhhhhhhcccc----------ccccccccccccccccccchh
Confidence 99999876641 233334556788899999885
No 41
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.85 E-value=2.1e-09 Score=77.06 Aligned_cols=47 Identities=26% Similarity=0.681 Sum_probs=41.1
Q ss_pred ccCCcHHHHHHHHhccChHhhHhhhccchhhhhhccChHHHHHHHhh
Q 012375 38 FDQIPWDVLIQIVKLIGPKEAAKLCVVSKSWRALVSDNRLWIFFLQH 84 (465)
Q Consensus 38 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 84 (465)
.+.||.|++.+|++.|++.|+++++.|||.|+.++.++.||+.+.+|
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~~~~r 47 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRRLCLR 47 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHHHC--
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhhhccC
Confidence 36899999999999999999999999999999999999999998654
No 42
>PRK11678 putative chaperone; Provisional
Probab=98.77 E-value=6e-07 Score=94.74 Aligned_cols=93 Identities=17% Similarity=0.118 Sum_probs=61.5
Q ss_pred CCeEEEecCCCCCCccchHHhHHHH--HHHHHHHHhhccCCeEEEeecchHHHHhcCC-----CceEEEeecCceeEEEE
Q 012375 186 QPIVVSIPICHYDDTENAKASRRQL--KDCFQQVLFDLNVPAVCAINQATLALYAAKR-----TSGIVVNIGFQVTSVVP 258 (465)
Q Consensus 186 ~pVll~ep~~~~~~~~~~~~~R~~~--~e~l~e~lFE~~vpav~~~~~~vlalya~g~-----~tglVVDiG~~~T~v~P 258 (465)
..+|++.|..... ...+..+|+.. +...++. .|++.+.++++|++|++++|. .+-+|+|+|+++++++-
T Consensus 150 ~~~VItvPa~F~~-~~~~~~qr~a~~~l~~Aa~~---AG~~~v~li~EPtAAAl~y~~~~~~~~~vlV~D~GGGT~D~Sv 225 (450)
T PRK11678 150 TQAVIGRPVNFQG-LGGEEANRQAEGILERAAKR---AGFKDVEFQFEPVAAGLDFEATLTEEKRVLVVDIGGGTTDCSM 225 (450)
T ss_pred CcEEEEECCcccc-CCcchhHHHHHHHHHHHHHH---cCCCEEEEEcCHHHHHHHhccccCCCCeEEEEEeCCCeEEEEE
Confidence 4689998875420 01112333221 1223333 899999999999999999873 56799999999999886
Q ss_pred EeeC-----------eeeccccEEEEeccHHHHHHHHH
Q 012375 259 ILHG-----------KVMRKVGVEVMGLGALKLTGYLR 285 (465)
Q Consensus 259 V~dG-----------~vl~~~~~~~~~iGG~~lt~~L~ 285 (465)
|--+ .++.. + -..+||+++++.|.
T Consensus 226 v~~~~~~~~~~~r~~~vla~-~--G~~lGG~DfD~~L~ 260 (450)
T PRK11678 226 LLMGPSWRGRADRSASLLGH-S--GQRIGGNDLDIALA 260 (450)
T ss_pred EEecCcccccCCcceeEEec-C--CCCCChHHHHHHHH
Confidence 6422 12222 1 13699999999985
No 43
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=98.75 E-value=6.6e-08 Score=100.09 Aligned_cols=190 Identities=16% Similarity=0.179 Sum_probs=122.5
Q ss_pred HHHHHHHHhhccCCeEEEeecchHHHHhcC-----CCceEEEeecCceeEEEEEeeCeeeccccEEEEeccHHHHHHHHH
Q 012375 211 KDCFQQVLFDLNVPAVCAINQATLALYAAK-----RTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLR 285 (465)
Q Consensus 211 ~e~l~e~lFE~~vpav~~~~~~vlalya~g-----~~tglVVDiG~~~T~v~PV~dG~vl~~~~~~~~~iGG~~lt~~L~ 285 (465)
.+.|.+++-..+..-..++-++++++.++= .-.+++||+|+++|+|+-+.+|.+... ..+|+||+++|+.+.
T Consensus 167 ~~Nl~k~v~r~gl~v~~i~l~plAsa~a~L~~dEkelGv~lIDiG~GTTdIai~~~G~l~~~---~~ipvgG~~vT~DIa 243 (418)
T COG0849 167 LENLEKCVERAGLKVDNIVLEPLASALAVLTEDEKELGVALIDIGGGTTDIAIYKNGALRYT---GVIPVGGDHVTKDIA 243 (418)
T ss_pred HHHHHHHHHHhCCCeeeEEEehhhhhhhccCcccHhcCeEEEEeCCCcEEEEEEECCEEEEE---eeEeeCccHHHHHHH
Confidence 333444333356666666667788877763 357899999999999999999998765 668999999999999
Q ss_pred HHHHhcCCCCCcHHHHHHHHHhccccccchHHHhhccccceEEecC--CcE-EEecce------ecccccccccCCcCCc
Q 012375 286 LLMQQNNINFGSLYTVRTLKEKLCYVAADYKAELSKDTQASLEIAG--EGW-FTLSKE------RFQTGEILFQPRMADV 356 (465)
Q Consensus 286 ~lL~~~~~~~~~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~~~lpd--~~~-i~l~~e------r~~~~E~LF~P~~~~~ 356 (465)
..|.- +.+.+|+||.+++....+... ....++.|. +.. ..+... +-+++|
T Consensus 244 ~~l~t------~~~~AE~iK~~~g~a~~~~~~-----~~~~i~v~~vg~~~~~~~t~~~ls~II~aR~~E---------- 302 (418)
T COG0849 244 KGLKT------PFEEAERIKIKYGSALISLAD-----DEETIEVPSVGSDIPRQVTRSELSEIIEARVEE---------- 302 (418)
T ss_pred HHhCC------CHHHHHHHHHHcCccccCcCC-----CcceEecccCCCcccchhhHHHHHHHHHhhHHH----------
Confidence 88764 578999999998765433210 111122221 000 111100 111233
Q ss_pred ccCCHHHHHHHHHhhcCCCCccccccccCceEEecCCCCccchHHHHHHHHHhcCCCCCCCceEEeCC----------CC
Q 012375 357 RTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGLAERLEKELRGLLPSSISNGIRVIPP----------PY 426 (465)
Q Consensus 357 ~~~~L~~~I~~sI~~~~~~dl~~r~~l~~NIvLtGG~S~ipGl~eRL~~EL~~l~p~~~~~~v~v~~~----------~~ 426 (465)
+-+++..-|++... ...+.+.|+||||++++||+.+-.++-+.. ++++-.| .+
T Consensus 303 ----i~~lV~~~l~~~g~-----~~~~~~gvVlTGG~a~l~Gi~elA~~if~~--------~vRig~P~~~~Gl~d~~~~ 365 (418)
T COG0849 303 ----ILELVKAELRKSGL-----PNHLPGGVVLTGGGAQLPGIVELAERIFGR--------PVRLGVPLNIVGLTDIARN 365 (418)
T ss_pred ----HHHHHHHHHHHcCc-----cccCCCeEEEECchhcCccHHHHHHHhcCC--------ceEeCCCccccCchhhccC
Confidence 33455666666543 257888999999999999997765544432 1333222 24
Q ss_pred CcchhhhhhHHhhcC
Q 012375 427 GADTAWFGAKLVGNL 441 (465)
Q Consensus 427 ~~~~aW~Ggsilasl 441 (465)
|.|++=+|.-.++.+
T Consensus 366 p~fs~avGl~~~~~~ 380 (418)
T COG0849 366 PAFSTAVGLLLYGAL 380 (418)
T ss_pred chhhhhHHHHHHHhh
Confidence 689999998887774
No 44
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=98.53 E-value=1.3e-06 Score=89.25 Aligned_cols=153 Identities=15% Similarity=0.142 Sum_probs=96.0
Q ss_pred HHHHHHHHHHhhccCCeEEEeecchHH--HHh-----c---C-CC-ceEEEeecCceeEEEEEeeCeeeccccEEEEecc
Q 012375 209 QLKDCFQQVLFDLNVPAVCAINQATLA--LYA-----A---K-RT-SGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLG 276 (465)
Q Consensus 209 ~~~e~l~e~lFE~~vpav~~~~~~vla--lya-----~---g-~~-tglVVDiG~~~T~v~PV~dG~vl~~~~~~~~~iG 276 (465)
+..+.+.+++-+.|+.-..+..++++. ++. . . .. +.++||+|+++|+++-+.+|.++.. +.+++|
T Consensus 143 ~~v~~~~~~~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~~g~~~~~---r~i~~G 219 (348)
T TIGR01175 143 EVVDSRLHALKLAGLEPKVVDVESFALLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLHPGRMLFT---REVPFG 219 (348)
T ss_pred HHHHHHHHHHHHcCCceEEEecHHHHHHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEECCeEEEE---EEeech
Confidence 344555555444555444444444443 442 1 1 22 4899999999999999999998764 789999
Q ss_pred HHHHHHHHHHHHHhcCCCCCcHHHHHHHHHhccccccchHHHhhccccceEEecCCcEEEecceecccccccccCCcCCc
Q 012375 277 ALKLTGYLRLLMQQNNINFGSLYTVRTLKEKLCYVAADYKAELSKDTQASLEIAGEGWFTLSKERFQTGEILFQPRMADV 356 (465)
Q Consensus 277 G~~lt~~L~~lL~~~~~~~~~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~~~lpd~~~i~l~~er~~~~E~LF~P~~~~~ 356 (465)
|.++++.+.+.+.- +.+.++++|.+..+... +..+ +.+..+
T Consensus 220 ~~~i~~~i~~~~~~------~~~~Ae~~k~~~~~~~~-~~~~-------------------------~~~~~~------- 260 (348)
T TIGR01175 220 TRQLTSELSRAYGL------NPEEAGEAKQQGGLPLL-YDPE-------------------------VLRRFK------- 260 (348)
T ss_pred HHHHHHHHHHHcCC------CHHHHHHHHhcCCCCCc-hhHH-------------------------HHHHHH-------
Confidence 99999988765532 45778888876443211 0000 000000
Q ss_pred ccCCHHHHHHHHHhhcCCCCccccccccCceEEecCCCCccchHHHHHHHHH
Q 012375 357 RTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGLAERLEKELR 408 (465)
Q Consensus 357 ~~~~L~~~I~~sI~~~~~~dl~~r~~l~~NIvLtGG~S~ipGl~eRL~~EL~ 408 (465)
..|..-|..+++-... .. .....+.|+||||++.++||.+.|++++.
T Consensus 261 --~~l~~eI~~~l~~~~~-~~--~~~~i~~I~LtGgga~~~gl~~~l~~~l~ 307 (348)
T TIGR01175 261 --GELVDEIRRSLQFFTA-QS--GTNSLDGLVLAGGGATLSGLDAAIYQRLG 307 (348)
T ss_pred --HHHHHHHHHHHHhhcC-CC--CCcccceEEEECccccchhHHHHHHHHHC
Confidence 1144445555544332 11 23346789999999999999999999996
No 45
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=98.46 E-value=5.7e-06 Score=83.71 Aligned_cols=82 Identities=12% Similarity=0.159 Sum_probs=62.3
Q ss_pred ccCCeEEEeecchHHHHhc---------CCCceEEEeecCceeEEEEEeeCeeeccccEEEEeccHHHHHHHHHHHHHhc
Q 012375 221 LNVPAVCAINQATLALYAA---------KRTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQN 291 (465)
Q Consensus 221 ~~vpav~~~~~~vlalya~---------g~~tglVVDiG~~~T~v~PV~dG~vl~~~~~~~~~iGG~~lt~~L~~lL~~~ 291 (465)
..+..+.+.+|++.|++.. ...+.+|||+|+.+|+++.+-++.+... .+.+.+.|...+.+.+++.+.++
T Consensus 137 i~I~~V~V~PQ~~Ga~~~~~~~~~~~~~~~~~~lVIDIG~~TtD~~~~~~~~~~~~-~s~s~~~G~~~~~~~I~~~i~~~ 215 (320)
T TIGR03739 137 VTVRKVLAVPQPQGALVHFVAQHGKLLTGKEQSLIIDPGYFTFDWLVARGMRLVQK-RSGSVNGGMSDIYRLLAAEISKD 215 (320)
T ss_pred EEEEEEEEeCCChHHHHHHHhcCCCcccCcCcEEEEecCCCeeeeehccCCEEccc-ccCCchhHHHHHHHHHHHHHHhh
Confidence 3678899999999998764 2345699999999999987777777665 45567899999999999998755
Q ss_pred -CCC-CCcHHHHHH
Q 012375 292 -NIN-FGSLYTVRT 303 (465)
Q Consensus 292 -~~~-~~~~~~v~~ 303 (465)
+.. +.+.+.+++
T Consensus 216 ~g~~~~~~~~~i~~ 229 (320)
T TIGR03739 216 IGTPAYRDIDRIDL 229 (320)
T ss_pred cCCCCccCHHHHHH
Confidence 444 234445554
No 46
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.45 E-value=1.5e-07 Score=67.58 Aligned_cols=46 Identities=35% Similarity=0.765 Sum_probs=40.4
Q ss_pred ccCCcHHHHHHHHhccChHhhHhhhccchhhhhhccChHHHHHHHh
Q 012375 38 FDQIPWDVLIQIVKLIGPKEAAKLCVVSKSWRALVSDNRLWIFFLQ 83 (465)
Q Consensus 38 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 83 (465)
+..||.|++..|+..+++.|+++++.|||.|++++.++.+|.++++
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~~r 48 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKIIR 48 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHHH-
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHHhC
Confidence 5789999999999999999999999999999999999999999863
No 47
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=2.8e-05 Score=84.71 Aligned_cols=95 Identities=19% Similarity=0.149 Sum_probs=69.0
Q ss_pred CCCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhhccCCeEEEeecchHHHHhcCC-----CceEEEeecCceeEEEEE
Q 012375 185 TQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKR-----TSGIVVNIGFQVTSVVPI 259 (465)
Q Consensus 185 ~~pVll~ep~~~~~~~~~~~~~R~~~~e~l~e~lFE~~vpav~~~~~~vlalya~g~-----~tglVVDiG~~~T~v~PV 259 (465)
-+.++++.|.... ...|+..++. .++ .|++-+.++++|.+|+|++|. .+-+|+|+|+++++++-|
T Consensus 120 v~~~VItVPayF~------d~qR~at~~A-~~i---aGl~vlrlinEPtAAAlayg~~~~~~~~vlV~DlGGGTfDvSll 189 (579)
T COG0443 120 VTDAVITVPAYFN------DAQRQATKDA-ARI---AGLNVLRLINEPTAAALAYGLDKGKEKTVLVYDLGGGTFDVSLL 189 (579)
T ss_pred cceEEEEeCCCCC------HHHHHHHHHH-HHH---cCCCeEEEecchHHHHHHhHhccCCCcEEEEEEcCCCCEEEEEE
Confidence 3568999887763 3456554443 333 899999999999999999984 467999999999999877
Q ss_pred eeC--eeeccccEEEEeccHHHHHHHHHHHHH
Q 012375 260 LHG--KVMRKVGVEVMGLGALKLTGYLRLLMQ 289 (465)
Q Consensus 260 ~dG--~vl~~~~~~~~~iGG~~lt~~L~~lL~ 289 (465)
-=+ ..--.++.....+||++++..|...+.
T Consensus 190 ~~~~g~~ev~at~gd~~LGGddfD~~l~~~~~ 221 (579)
T COG0443 190 EIGDGVFEVLATGGDNHLGGDDFDNALIDYLV 221 (579)
T ss_pred EEcCCEEEEeecCCCcccCchhHHHHHHHHHH
Confidence 553 221111334567999999998877654
No 48
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.28 E-value=5.9e-07 Score=61.80 Aligned_cols=40 Identities=30% Similarity=0.699 Sum_probs=38.7
Q ss_pred CcHHHHHHHHhccChHhhHhhhccchhhhhhccChHHHHH
Q 012375 41 IPWDVLIQIVKLIGPKEAAKLCVVSKSWRALVSDNRLWIF 80 (465)
Q Consensus 41 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 80 (465)
||.|++.+|+.++++.|+++++.+||.||.++.++.+|+.
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~~ 40 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWFK 40 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhhc
Confidence 7999999999999999999999999999999999999974
No 49
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=98.28 E-value=6.5e-06 Score=84.13 Aligned_cols=69 Identities=17% Similarity=0.131 Sum_probs=56.3
Q ss_pred cCCeEEEeecchHHHHhcCC-------------CceEEEeecCceeEEEEEeeCeeeccccEEEEeccHHHHHHHHHHHH
Q 012375 222 NVPAVCAINQATLALYAAKR-------------TSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLM 288 (465)
Q Consensus 222 ~vpav~~~~~~vlalya~g~-------------~tglVVDiG~~~T~v~PV~dG~vl~~~~~~~~~iGG~~lt~~L~~lL 288 (465)
++..+.+++|++.|+|.... ...+|||+|+.+|+++-+.++.+... ....++.|...+.+.+.+.+
T Consensus 152 ~i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilvIDIG~~TtD~~v~~~~~~~~~-~s~s~~~G~~~~~~~I~~~i 230 (344)
T PRK13917 152 NVKGVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVSVIDFGSGTTDLDTIQNLKRVEE-ESFVIPKGTIDVYKRIASHI 230 (344)
T ss_pred EEEEEEEecccHHHHHHHHhcccCcccchhcccCcEEEEEcCCCcEEEEEEeCcEEccc-ccccccchHHHHHHHHHHHH
Confidence 45678899999999876532 24599999999999998888888776 55668999999999999999
Q ss_pred Hhc
Q 012375 289 QQN 291 (465)
Q Consensus 289 ~~~ 291 (465)
+.+
T Consensus 231 ~~~ 233 (344)
T PRK13917 231 SKK 233 (344)
T ss_pred Hhh
Confidence 543
No 50
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=98.23 E-value=4.9e-06 Score=84.88 Aligned_cols=154 Identities=21% Similarity=0.292 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHhhccCC--eEEEeecchHHHHhcC---------CCceEEEeecCceeEEEEEeeCeeeccccEEEEecc
Q 012375 208 RQLKDCFQQVLFDLNVP--AVCAINQATLALYAAK---------RTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLG 276 (465)
Q Consensus 208 ~~~~e~l~e~lFE~~vp--av~~~~~~vlalya~g---------~~tglVVDiG~~~T~v~PV~dG~vl~~~~~~~~~iG 276 (465)
+.+.+...+++-+.|.. ++-+-.-+++-+|... ..+-++||+|+..|+++-+.+|.++.. +.+++|
T Consensus 135 k~~v~~~~~~~~~aGL~~~~vDv~~~Al~r~~~~~~~~~~~~~~~~~~~lvdiG~~~t~~~i~~~g~~~f~---R~i~~G 211 (340)
T PF11104_consen 135 KEIVESYVELFEEAGLKPVAVDVEAFALARLFEFLEPQLPDEEDAETVALVDIGASSTTVIIFQNGKPIFS---RSIPIG 211 (340)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEEEHHHHGGGGGHHHHHTST----T-EEEEEEE-SS-EEEEEEETTEEEEE---EEES-S
T ss_pred HHHHHHHHHHHHHcCCceEEEeehHHHHHHHHHHHHHhCCcccccceEEEEEecCCeEEEEEEECCEEEEE---EEEeeC
Confidence 34455555654445553 3433334444444431 124589999999999999999998865 788999
Q ss_pred HHHHHHHHHHHHHhcCCCCCcHHHHHHHHHhccccccchHHHhhccccceEEecCCcEEEecceecccccccccCCcCCc
Q 012375 277 ALKLTGYLRLLMQQNNINFGSLYTVRTLKEKLCYVAADYKAELSKDTQASLEIAGEGWFTLSKERFQTGEILFQPRMADV 356 (465)
Q Consensus 277 G~~lt~~L~~lL~~~~~~~~~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~~~lpd~~~i~l~~er~~~~E~LF~P~~~~~ 356 (465)
|+++++.+.+.+.- +...++.+|..... ..+...+ +-+..+
T Consensus 212 ~~~l~~~i~~~~~i------~~~~Ae~~k~~~~l-~~~~~~~-------------------------~l~~~~------- 252 (340)
T PF11104_consen 212 GNDLTEAIARELGI------DFEEAEELKRSGGL-PEEYDQD-------------------------ALRPFL------- 252 (340)
T ss_dssp HHHHHHHHHHHTT--------HHHHHHHHHHT-------HHH-------------------------HHHHHH-------
T ss_pred HHHHHHHHHHhcCC------CHHHHHHHHhcCCC-CcchHHH-------------------------HHHHHH-------
Confidence 99999988866432 34566777765321 1111000 000000
Q ss_pred ccCCHHHHHHHHHhhcCCCCccccccccCceEEecCCCCccchHHHHHHHHH
Q 012375 357 RTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGLAERLEKELR 408 (465)
Q Consensus 357 ~~~~L~~~I~~sI~~~~~~dl~~r~~l~~NIvLtGG~S~ipGl~eRL~~EL~ 408 (465)
..|..-|..+++-... .. ...-.+.|+||||+|.++||.+.|+++|.
T Consensus 253 --~~l~~EI~rsl~~y~~-~~--~~~~i~~I~L~Ggga~l~gL~~~l~~~l~ 299 (340)
T PF11104_consen 253 --EELAREIRRSLDFYQS-QS--GGESIERIYLSGGGARLPGLAEYLSEELG 299 (340)
T ss_dssp --HHHHHHHHHHHHHHHH-H--------SEEEEESGGGGSTTHHHHHHHHHT
T ss_pred --HHHHHHHHHHHHHHHh-cC--CCCCCCEEEEECCccchhhHHHHHHHHHC
Confidence 1244455555553221 11 12345779999999999999999999996
No 51
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=98.13 E-value=5.2e-06 Score=76.53 Aligned_cols=213 Identities=19% Similarity=0.197 Sum_probs=126.0
Q ss_pred cEEEeCCcceEEEEEe-cCCCCCcccc---cccccCCccchHH---HHHHHHHHHHHhhcccCCCCCCeEEEecCCCCCC
Q 012375 127 SVIIDGGSGYCKFGWS-KYDCPSGRTA---TFLEFGNIESPMY---SRLRHFFATIYSRMQVKPSTQPIVVSIPICHYDD 199 (465)
Q Consensus 127 ~VVID~GS~~~K~Gfa-ge~~P~~~~~---s~~~~G~~~~Pi~---~~l~~~~~~~~~~L~v~~~~~pVll~ep~~~~~~ 199 (465)
-|=+|+|+..+-.=.- ++..|-...- .++.-|-+ ..+. +..+++.+.+-++|++..... --..|+-+-
T Consensus 31 ~vGVDLGT~~iV~~vlD~d~~Pvag~~~~advVRDGiV-vdf~eaveiVrrlkd~lEk~lGi~~tha--~taiPPGt~-- 105 (277)
T COG4820 31 WVGVDLGTCDIVSMVLDRDGQPVAGCLDWADVVRDGIV-VDFFEAVEIVRRLKDTLEKQLGIRFTHA--ATAIPPGTE-- 105 (277)
T ss_pred EEEeecccceEEEEEEcCCCCeEEEEehhhhhhccceE-EehhhHHHHHHHHHHHHHHhhCeEeeec--cccCCCCcc--
Confidence 4788999998766433 4556654321 12222211 1111 244555566556777642110 001122110
Q ss_pred ccchHHhHHHHHHHHHHHHhh-ccCCeEEEeecchHHHHhcCCCceEEEeecCceeEEEEEeeCeeeccccEEEEeccHH
Q 012375 200 TENAKASRRQLKDCFQQVLFD-LNVPAVCAINQATLALYAAKRTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGAL 278 (465)
Q Consensus 200 ~~~~~~~R~~~~e~l~e~lFE-~~vpav~~~~~~vlalya~g~~tglVVDiG~~~T~v~PV~dG~vl~~~~~~~~~iGG~ 278 (465)
...++. .. .+.| .|...++.+++|.++++-.+.+.|.|||+|.++|-|.-+-+|.++.. -.-+.||.
T Consensus 106 ~~~~ri--------~i-NViESAGlevl~vlDEPTAaa~vL~l~dg~VVDiGGGTTGIsi~kkGkViy~---ADEpTGGt 173 (277)
T COG4820 106 QGDPRI--------SI-NVIESAGLEVLHVLDEPTAAADVLQLDDGGVVDIGGGTTGISIVKKGKVIYS---ADEPTGGT 173 (277)
T ss_pred CCCceE--------EE-EeecccCceeeeecCCchhHHHHhccCCCcEEEeCCCcceeEEEEcCcEEEe---ccCCCCce
Confidence 000110 00 1123 78889999999999999999999999999999999999999999986 23578888
Q ss_pred HHHHHHHHHHHhcCCCCCcHHHHHHHHHhccccccchHHHhhccccceEEecCCcEEEecceecccccccccCCcCCccc
Q 012375 279 KLTGYLRLLMQQNNINFGSLYTVRTLKEKLCYVAADYKAELSKDTQASLEIAGEGWFTLSKERFQTGEILFQPRMADVRT 358 (465)
Q Consensus 279 ~lt~~L~~lL~~~~~~~~~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~~~lpd~~~i~l~~er~~~~E~LF~P~~~~~~~ 358 (465)
+++-.|. ..+++ +.+.+|++|...- + ++ |-|-.- .|- -
T Consensus 174 HmtLvlA---G~ygi---~~EeAE~~Kr~~k----~-----------------~~------Eif~~v----~PV-----~ 211 (277)
T COG4820 174 HMTLVLA---GNYGI---SLEEAEQYKRGHK----K-----------------GE------EIFPVV----KPV-----Y 211 (277)
T ss_pred eEEEEEe---cccCc---CHhHHHHhhhccc----c-----------------ch------hcccch----hHH-----H
Confidence 8774432 12222 4577888876420 0 00 000000 010 0
Q ss_pred CCHHHHHHHHHhhcCCCCccccccccCceEEecCCCCccchHHHHHHHHH
Q 012375 359 MGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGLAERLEKELR 408 (465)
Q Consensus 359 ~~L~~~I~~sI~~~~~~dl~~r~~l~~NIvLtGG~S~ipGl~eRL~~EL~ 408 (465)
..+.+.+..-|+.-++ ..+.|+||.++.||+.+-++++|.
T Consensus 212 eKMAeIv~~hie~~~i----------~dl~lvGGac~~~g~e~~Fe~~l~ 251 (277)
T COG4820 212 EKMAEIVARHIEGQGI----------TDLWLVGGACMQPGVEELFEKQLA 251 (277)
T ss_pred HHHHHHHHHHhccCCC----------cceEEecccccCccHHHHHHHHhc
Confidence 1255566666655554 345899999999999999999993
No 52
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=97.88 E-value=4.1e-05 Score=77.46 Aligned_cols=120 Identities=17% Similarity=0.234 Sum_probs=67.2
Q ss_pred HHHHHHhhcccCCCCCCeEEEecCCCCCCccchHHhHHHHHHHHHHHHh-------h-ccCCeEEEeecchHHHHhcC--
Q 012375 171 FFATIYSRMQVKPSTQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLF-------D-LNVPAVCAINQATLALYAAK-- 240 (465)
Q Consensus 171 ~~~~~~~~L~v~~~~~pVll~ep~~~~~~~~~~~~~R~~~~e~l~e~lF-------E-~~vpav~~~~~~vlalya~g-- 240 (465)
..++.+.+.+..|.+-.+++..|....-+.+. +.+++.+......++. + +++..+.+.||++.|.|..-
T Consensus 81 av~haL~~~G~~~~~V~lvvGLPl~~y~~~~~-~~~~~~i~rk~~n~~~~v~~~g~~~i~I~~V~V~PQ~~~A~~~~~~~ 159 (318)
T PF06406_consen 81 AVHHALLKAGLEPQDVDLVVGLPLSEYYDQDK-QKNEENIERKKENLMRPVELNGGYTITIKDVEVFPQSVGAVFDALMD 159 (318)
T ss_dssp HHHHHHHHHS--SSEEEEEEEE-HHHHB-TTS-SB-HHHHHHHHHHTTS-EEETTB---EEEEEEEEESSHHHHHHHHHT
T ss_pred HHHHHHHHcCCCCCCeEEEecCCHHHHHhhhh-hhHHHHHHhhhcccccceeecCceeEEEeeEEEEcccHHHHHHHHHh
Confidence 34444555677776655667777532200000 1111222221112221 1 45789999999999999862
Q ss_pred ---CCceEEEeecCceeEEEEEeeCeeeccccEE-EEeccHHHHHHHHHHHHHhcC
Q 012375 241 ---RTSGIVVNIGFQVTSVVPILHGKVMRKVGVE-VMGLGALKLTGYLRLLMQQNN 292 (465)
Q Consensus 241 ---~~tglVVDiG~~~T~v~PV~dG~vl~~~~~~-~~~iGG~~lt~~L~~lL~~~~ 292 (465)
..+.+|||||+.+|+++-|.++..... .+. ..++|-..+.+.+++.|...+
T Consensus 160 ~~~~~~~lVVDIGG~T~Dv~~v~~~~~~~~-~~~~~~~~Gvs~~~~~I~~~l~~~~ 214 (318)
T PF06406_consen 160 LDEDESVLVVDIGGRTTDVAVVRGGLPDIS-KCSGTPEIGVSDLYDAIAQALRSAG 214 (318)
T ss_dssp S-TTSEEEEEEE-SS-EEEEEEEGGG--EE-EEEEETTSSTHHHHHHHHHHTT--S
T ss_pred hcccCcEEEEEcCCCeEEeeeecCCccccc-hhccCCchhHHHHHHHHHHHHHHhc
Confidence 357899999999999998876654333 233 346899999999999887743
No 53
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.003 Score=68.52 Aligned_cols=94 Identities=24% Similarity=0.251 Sum_probs=68.1
Q ss_pred CeEEEecCCCCCCccchHHhHHHHHHHHHHHHhhccCCeEEEeecchHHHHhcCC----------CceEEEeecCceeEE
Q 012375 187 PIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKR----------TSGIVVNIGFQVTSV 256 (465)
Q Consensus 187 pVll~ep~~~~~~~~~~~~~R~~~~e~l~e~lFE~~vpav~~~~~~vlalya~g~----------~tglVVDiG~~~T~v 256 (465)
-+++|.|++.. ++.|+.+++ ..++ .|..-+.++++..+++..+|. +.-++-|+|.+.|++
T Consensus 160 d~ViTVP~~F~------qaeR~all~-Aa~i---agl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~A 229 (902)
T KOG0104|consen 160 DMVITVPPFFN------QAERRALLQ-AAQI---AGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSA 229 (902)
T ss_pred heEEeCCcccC------HHHHHHHHH-HHHh---cCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeE
Confidence 47888888764 677876554 3455 899999999999999998873 345999999999999
Q ss_pred EEEeeCeeecc------ccEEE------EeccHHHHHHHHHHHHHh
Q 012375 257 VPILHGKVMRK------VGVEV------MGLGALKLTGYLRLLMQQ 290 (465)
Q Consensus 257 ~PV~dG~vl~~------~~~~~------~~iGG~~lt~~L~~lL~~ 290 (465)
+-|.--.+-.. +.++. ..+||..++..|++.|.+
T Consensus 230 tivsy~~v~~k~~g~~~p~i~~~gvGfd~tLGG~e~~~rLr~~l~~ 275 (902)
T KOG0104|consen 230 TIVSYQLVKTKEQGGKQPQIQVLGVGFDRTLGGLEMTMRLRDHLAN 275 (902)
T ss_pred EEEEEEeeccccccCccceEEEEeeccCCccchHHHHHHHHHHHHH
Confidence 87763222111 01222 247899999999988764
No 54
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=97.44 E-value=0.0072 Score=58.84 Aligned_cols=43 Identities=37% Similarity=0.582 Sum_probs=35.2
Q ss_pred ceEEecCCCCccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHh
Q 012375 386 TVILTGGSACLPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLV 438 (465)
Q Consensus 386 NIvLtGG~S~ipGl~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsil 438 (465)
.|+++||.+..+++.++|.+.|. ..+..++++.+..=+||+++
T Consensus 206 ~Vvl~GGva~n~~l~~~l~~~lg----------~~v~~~~~~~~~~AlGaAl~ 248 (248)
T TIGR00241 206 PIVFTGGVSKNKGLVKALEKKLG----------MKVITPPEPQIVGAVGAALL 248 (248)
T ss_pred CEEEECccccCHHHHHHHHHHhC----------CcEEcCCCccHHHHHHHHhC
Confidence 69999999999999999999883 45666667777777888763
No 55
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=97.42 E-value=0.0017 Score=64.40 Aligned_cols=50 Identities=28% Similarity=0.361 Sum_probs=40.4
Q ss_pred ccccCceEEecCCCCccchHHHHHHHHHhcCCCCCCCceEEe-CCCCCcchhhhhhHHhhc
Q 012375 381 DAWFKTVILTGGSACLPGLAERLEKELRGLLPSSISNGIRVI-PPPYGADTAWFGAKLVGN 440 (465)
Q Consensus 381 ~~l~~NIvLtGG~S~ipGl~eRL~~EL~~l~p~~~~~~v~v~-~~~~~~~~aW~Ggsilas 440 (465)
..+-..|+++||.+..+|+.+.|+++|. .++. .++++++..=+||+++|.
T Consensus 237 ~~i~~~v~~~GGva~N~~l~~al~~~Lg----------~~v~~~p~~p~~~GAlGAAL~A~ 287 (293)
T TIGR03192 237 IGVEEGFFITGGIAKNPGVVKRIERILG----------IKAVDTKIDSQIAGALGAALFGY 287 (293)
T ss_pred cCCCCCEEEECcccccHHHHHHHHHHhC----------CCceeCCCCccHHHHHHHHHHHH
Confidence 3566789999999999999999999985 2333 355678888899999984
No 56
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=97.29 E-value=0.0011 Score=68.28 Aligned_cols=242 Identities=16% Similarity=0.115 Sum_probs=125.7
Q ss_pred CCCCccEEEeCCcceEEEEEecCCCCCcccccccccCCccchHHHHHHHHHHHHHhhcccCCCCCC-eEEEecCCCCCCc
Q 012375 122 AQVPGSVIIDGGSGYCKFGWSKYDCPSGRTATFLEFGNIESPMYSRLRHFFATIYSRMQVKPSTQP-IVVSIPICHYDDT 200 (465)
Q Consensus 122 ~~~~~~VVID~GS~~~K~Gfage~~P~~~~~s~~~~G~~~~Pi~~~l~~~~~~~~~~L~v~~~~~p-Vll~ep~~~~~~~ 200 (465)
.++.-.+=||.||-++|+-+-.+. ..+...+... ..| .+..+.+++.+++..+++.++.. +++|-
T Consensus 141 ~~~g~~lGIDiGSTttK~Vl~dd~--~Ii~~~~~~t---~~~-~~~a~~~l~~~l~~~Gl~~~di~~i~~TG-------- 206 (404)
T TIGR03286 141 RQEGLTLGIDSGSTTTKAVVMEDN--EVIGTGWVPT---TKV-IESAEEAVERALEEAGVSLEDVEAIGTTG-------- 206 (404)
T ss_pred ccCCEEEEEEcChhheeeEEEcCC--eEEEEEEeec---ccH-HHHHHHHHHHHHHHcCCCccceeEEEeee--------
Confidence 334457899999999999776432 2221111111 223 34556666666777776554433 34432
Q ss_pred cchHHhHHHHHHHHHHHHhhccCCeEEEeecchH----HHHhcC--CCceEEEeecCceeEEEEEeeCeeeccccEEEEe
Q 012375 201 ENAKASRRQLKDCFQQVLFDLNVPAVCAINQATL----ALYAAK--RTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMG 274 (465)
Q Consensus 201 ~~~~~~R~~~~e~l~e~lFE~~vpav~~~~~~vl----alya~g--~~tglVVDiG~~~T~v~PV~dG~vl~~~~~~~~~ 274 (465)
.-|..+ -+. ++.+.+ +.+-.+ |.|-.. .....|+|||.+-+-++-+-+|.+..- ..-...
T Consensus 207 ----yGR~~i----~~~---~~ad~i--v~EItaha~GA~~L~p~~~~v~TIIDIGGQDsK~I~l~~G~v~dF-~MNdkC 272 (404)
T TIGR03286 207 ----YGRFTI----GEH---FGADLI--QEELTVNSKGAVYLADKQEGPATVIDIGGMDNKAISVWDGIPDNF-TMGGIC 272 (404)
T ss_pred ----ecHHHH----hhh---cCCCce--EEEEhhHHHHHHHhcccCCCCcEEEEeCCCceEEEEEcCCceeeE-EEcCcc
Confidence 334322 111 333332 222222 233322 247899999999999888877876432 111112
Q ss_pred c--cHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHhccccccchHHHhhccccceEEecCCcEEEecceecccccccccCC
Q 012375 275 L--GALKLTGYLRLLMQQNNINFGSLYTVRTLKEKLCYVAADYKAELSKDTQASLEIAGEGWFTLSKERFQTGEILFQPR 352 (465)
Q Consensus 275 i--GG~~lt~~L~~lL~~~~~~~~~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~~~lpd~~~i~l~~er~~~~E~LF~P~ 352 (465)
- +|+.|...-+.| +.++. ++.+.-++.. ...+. |+.-+. .|..+
T Consensus 273 AAGTGrFLE~~A~~L----gi~ie--El~~lA~~~~---------------~~pv~--------IsS~Ct-----VFaeS 318 (404)
T TIGR03286 273 AGASGRFLEMTAKRL----GVDIT--ELGKLALKGM---------------PEKVR--------MNSYCI-----VFGIQ 318 (404)
T ss_pred cccCcHHHHHHHHHh----CCCHH--HHHHHHHhCC---------------CCCCC--------ccCccc-----ccccH
Confidence 2 356665544332 32211 1111101000 00001 100000 11110
Q ss_pred c------CCc----ccCCHHHHHHHHHhh-cCCCCccccccccCceEEecCCCCccchHHHHHHHHHhcCCCCCCCceEE
Q 012375 353 M------ADV----RTMGLDQAVALCMDH-CHYAELSGDDAWFKTVILTGGSACLPGLAERLEKELRGLLPSSISNGIRV 421 (465)
Q Consensus 353 ~------~~~----~~~~L~~~I~~sI~~-~~~~dl~~r~~l~~NIvLtGG~S~ipGl~eRL~~EL~~l~p~~~~~~v~v 421 (465)
. .|. -..||..+|.+-+.. .-. +..+-+.|+++||.++.+|+.+.|++.|. .++
T Consensus 319 evIsll~~G~~~eDIaAGl~~SIa~rv~~~l~~-----~~~i~~~VvftGGva~N~gvv~ale~~Lg----------~~i 383 (404)
T TIGR03286 319 DLVTALAEGASPEDVAAAACHSVAEQVYEQQLQ-----EIDVREPVILVGGTSLIEGLVKALGDLLG----------IEV 383 (404)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHhh-----cCCCCCcEEEECChhhhHHHHHHHHHHhC----------CcE
Confidence 0 010 123455555554442 111 23455669999999999999999999984 456
Q ss_pred eCCCCCcchhhhhhHHhhc
Q 012375 422 IPPPYGADTAWFGAKLVGN 440 (465)
Q Consensus 422 ~~~~~~~~~aW~Ggsilas 440 (465)
+.|+++++..=+||+++|+
T Consensus 384 ivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 384 VVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred EECCcccHHHHHHHHHHhc
Confidence 6688889999999999985
No 57
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.28 E-value=0.0015 Score=64.92 Aligned_cols=117 Identities=22% Similarity=0.313 Sum_probs=78.3
Q ss_pred eEEEeecCceeEEEEEeeCeeeccccEEEEeccHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHhccccccchHHHhhccc
Q 012375 244 GIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINFGSLYTVRTLKEKLCYVAADYKAELSKDT 323 (465)
Q Consensus 244 glVVDiG~~~T~v~PV~dG~vl~~~~~~~~~iGG~~lt~~L~~lL~~~~~~~~~~~~v~~iKe~~c~v~~d~~~e~~~~~ 323 (465)
..|+|||+..|.+.-+++|+++.. +..++||+.++..+.+...- +...++++|.... ...||..+..
T Consensus 195 vav~~Igat~s~l~vi~~gk~ly~---r~~~~g~~Qlt~~i~r~~~L------~~~~a~~~k~~~~-~P~~y~~~vl--- 261 (354)
T COG4972 195 VAVFDIGATSSELLVIQDGKILYT---REVPVGTDQLTQEIQRAYSL------TEEKAEEIKRGGT-LPTDYGSEVL--- 261 (354)
T ss_pred heeeeecccceEEEEEECCeeeeE---eeccCcHHHHHHHHHHHhCC------ChhHhHHHHhCCC-CCCchhHHHH---
Confidence 359999999999999999999986 88999999999988876543 3456667765422 1122222210
Q ss_pred cceEEecCCcEEEecceecccccccccCCcCCcccCCHHHHHHHHHhhcCC-CCccccccccCceEEecCCCCccchHHH
Q 012375 324 QASLEIAGEGWFTLSKERFQTGEILFQPRMADVRTMGLDQAVALCMDHCHY-AELSGDDAWFKTVILTGGSACLPGLAER 402 (465)
Q Consensus 324 ~~~~~lpd~~~i~l~~er~~~~E~LF~P~~~~~~~~~L~~~I~~sI~~~~~-~dl~~r~~l~~NIvLtGG~S~ipGl~eR 402 (465)
+|. ...|.+-|..+|+-.-. .+ ..-...|+|+||++.+.|+.+-
T Consensus 262 --------------------------~~f-----~~~l~~ei~Rslqfy~~~s~----~~~id~i~LaGggA~l~gL~~~ 306 (354)
T COG4972 262 --------------------------RPF-----LGELTQEIRRSLQFYLSQSE----MVDIDQILLAGGGASLEGLAAA 306 (354)
T ss_pred --------------------------HHH-----HHHHHHHHHHHHHHHHhccc----cceeeEEEEecCCcchhhHHHH
Confidence 000 00144445555554211 01 1234679999999999999999
Q ss_pred HHHHHH
Q 012375 403 LEKELR 408 (465)
Q Consensus 403 L~~EL~ 408 (465)
+.+.|.
T Consensus 307 i~qrl~ 312 (354)
T COG4972 307 IQQRLS 312 (354)
T ss_pred HHHHhC
Confidence 999985
No 58
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.0079 Score=65.05 Aligned_cols=211 Identities=19% Similarity=0.228 Sum_probs=119.9
Q ss_pred CeEEEecCCCCCCccchHHhHHHHHHHHHHHHhhccCCeEEEeecchHHHHhcCC-------CceEEEeecCceeEEEEE
Q 012375 187 PIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKR-------TSGIVVNIGFQVTSVVPI 259 (465)
Q Consensus 187 pVll~ep~~~~~~~~~~~~~R~~~~e~l~e~lFE~~vpav~~~~~~vlalya~g~-------~tglVVDiG~~~T~v~PV 259 (465)
.++++.|.-.. ...|+.. +....+ .|++.+-++++|.+++.++|. .+-+|.|.|++..+|.++
T Consensus 145 ~aviTVPa~F~------~~Qr~at-~~A~~i---aGl~vlrii~EPtAaalAygl~k~~~~~~~VlI~DlGggtfdvs~l 214 (620)
T KOG0101|consen 145 KAVVTVPAYFN------DSQRAAT-KDAALI---AGLNVLRIINEPTAAALAYGLDKKVLGERNVLIFDLGGGTFDVSVL 214 (620)
T ss_pred eEEEEecCCcC------HHHHHHH-HHHHHh---cCCceeeeecchHHHHHHhhccccccceeeEEEEEcCCCceeeeeE
Confidence 46777775442 2334433 333343 888999999999999999873 455999999999988877
Q ss_pred ee--CeeeccccEEEEeccHHHHHHHHHHHHHh-----cCCCCCc--------HHHHHHHHHhccccccchHHHhhcccc
Q 012375 260 LH--GKVMRKVGVEVMGLGALKLTGYLRLLMQQ-----NNINFGS--------LYTVRTLKEKLCYVAADYKAELSKDTQ 324 (465)
Q Consensus 260 ~d--G~vl~~~~~~~~~iGG~~lt~~L~~lL~~-----~~~~~~~--------~~~v~~iKe~~c~v~~d~~~e~~~~~~ 324 (465)
.- |.-...+..-..++||.++++.|...+.. .+....+ ...+|..|.++.... .
T Consensus 215 ~i~gG~~~vkat~gd~~lGGedf~~~l~~h~~~ef~~k~~~d~~~n~r~l~rLR~a~E~aKr~LS~~~-----------~ 283 (620)
T KOG0101|consen 215 SLEGGIFEVKATAGDTHLGGEDFDNKLVNHFAAEFKRKAGKDIGGNARALRRLRTACERAKRTLSSST-----------Q 283 (620)
T ss_pred EeccchhhhhhhcccccccchhhhHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhhhcccc-----------c
Confidence 63 32111113344689999988877754432 1212211 123444555542211 1
Q ss_pred ceEE---ecCCcEE--Eecceec-ccccccccCCcCCcccCCHHHHHHHHHhhcCCCCccccccccCceEEecCCCCccc
Q 012375 325 ASLE---IAGEGWF--TLSKERF-QTGEILFQPRMADVRTMGLDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPG 398 (465)
Q Consensus 325 ~~~~---lpd~~~i--~l~~er~-~~~E~LF~P~~~~~~~~~L~~~I~~sI~~~~~~dl~~r~~l~~NIvLtGG~S~ipG 398 (465)
.+.+ |-+|..+ .+...|| .....||.- ..+.+..+++..-. | +.-..-|||+||++.+|.
T Consensus 284 ~~i~vdsL~~g~d~~~~itrarfe~l~~dlf~~---------~~~~v~~~L~da~~-d----k~~i~~vvlVGGstriPk 349 (620)
T KOG0101|consen 284 ASIEIDSLYEGIDFYTSITRARFEELNADLFRS---------TLEPVEKALKDAKL-D----KSDIDEVVLVGGSTRIPK 349 (620)
T ss_pred ceeccchhhccccccceeehhhhhhhhhHHHHH---------HHHHHHHHHHhhcc-C----ccCCceeEEecCcccchH
Confidence 1111 1122222 1222333 234555542 33445566665443 2 344567999999999999
Q ss_pred hHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhcC
Q 012375 399 LAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGNL 441 (465)
Q Consensus 399 l~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilasl 441 (465)
+..-++.=+.. -.+..+-+|.-++=+||++-|.+
T Consensus 350 ~~~ll~d~f~~---------k~~~~sinpDeavA~GAavqaa~ 383 (620)
T KOG0101|consen 350 VQKLLEDFFNG---------KELNKSINPDEAVAYGAAVQAAI 383 (620)
T ss_pred HHHHHHHHhcc---------cccccCCCHHHHHHhhHHHHhhh
Confidence 88777655532 11223334566777888887764
No 59
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=96.81 E-value=0.008 Score=63.00 Aligned_cols=155 Identities=14% Similarity=0.187 Sum_probs=92.1
Q ss_pred ccEEEeCCcceEEEEEec----C-----CCCCcccc--cccccCCc-cchH-------HHHHHHHHHHHHhhcccCCCC-
Q 012375 126 GSVIIDGGSGYCKFGWSK----Y-----DCPSGRTA--TFLEFGNI-ESPM-------YSRLRHFFATIYSRMQVKPST- 185 (465)
Q Consensus 126 ~~VVID~GS~~~K~Gfag----e-----~~P~~~~~--s~~~~G~~-~~Pi-------~~~l~~~~~~~~~~L~v~~~~- 185 (465)
..|=||+||.+++.=||. + ..||+.+- .+++.+++ ..|+ .+.++.+.+.=|++.++.|++
T Consensus 7 ~SVGIDIGTsTTqlvfSrl~l~n~a~~~~vpr~~I~dkev~yrS~i~fTPl~~~~~ID~~~i~~~V~~ey~~Agi~~~di 86 (475)
T PRK10719 7 LSVGIDIGTTTTQVIFSRLELENRASVFQVPRIEIIDKEIIYRSPIYFTPLLKQGEIDEAAIKELIEEEYQKAGIAPESI 86 (475)
T ss_pred EEEEEeccCceEEEEEEEEEEecccccccCceEEEeeeEEEEecCceecCCCCCccccHHHHHHHHHHHHHHcCCCHHHc
Confidence 468899999999998883 1 12554331 12222222 2233 256788887778888888763
Q ss_pred --CCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhhccCCeEE-----EeecchHHHHhcC--------CCceEEEeec
Q 012375 186 --QPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVC-----AINQATLALYAAK--------RTSGIVVNIG 250 (465)
Q Consensus 186 --~pVll~ep~~~~~~~~~~~~~R~~~~e~l~e~lFE~~vpav~-----~~~~~vlalya~g--------~~tglVVDiG 250 (465)
.-++++-.. ..++++.+.+-..= ..+..+- +--+.+++.+|+| ....++||||
T Consensus 87 e~~ahIITg~~----------~~~~Nl~~~v~~~~--~~~gdfVVA~AG~~le~iva~~ASg~avLseEke~gVa~IDIG 154 (475)
T PRK10719 87 DSGAVIITGET----------ARKENAREVVMALS--GSAGDFVVATAGPDLESIIAGKGAGAQTLSEERNTRVLNIDIG 154 (475)
T ss_pred cccEEEEEech----------hHHHHHHHHHHHhc--ccccceeeeccCccHHHhhhHHHhhHHHhhhhccCceEEEEeC
Confidence 334555332 23344444433310 1111111 1112223344443 3567999999
Q ss_pred CceeEEEEEeeCeeeccccEEEEeccHHHHHHH-----------HHHHHHhcCCCC
Q 012375 251 FQVTSVVPILHGKVMRKVGVEVMGLGALKLTGY-----------LRLLMQQNNINF 295 (465)
Q Consensus 251 ~~~T~v~PV~dG~vl~~~~~~~~~iGG~~lt~~-----------L~~lL~~~~~~~ 295 (465)
+++|+++-+.+|.++.. ..+++||+++|.. .+.+++..+..+
T Consensus 155 gGTT~iaVf~~G~l~~T---~~l~vGG~~IT~D~~~~i~yis~~~~~l~~~~~~~~ 207 (475)
T PRK10719 155 GGTANYALFDAGKVIDT---ACLNVGGRLIETDSQGRVTYISPPGQMILDELGLAI 207 (475)
T ss_pred CCceEEEEEECCEEEEE---EEEecccceEEECCCCCEEEEChHHHHHHHHcCCCc
Confidence 99999999999998875 5689999988874 445666666544
No 60
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=96.42 E-value=0.083 Score=51.78 Aligned_cols=50 Identities=30% Similarity=0.364 Sum_probs=39.7
Q ss_pred CceEEecCCCCccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhh
Q 012375 385 KTVILTGGSACLPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVG 439 (465)
Q Consensus 385 ~NIvLtGG~S~ipGl~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsila 439 (465)
.+|+++||.++-+|+.+.|+++|... . . .+.+..++++++..=+||++++
T Consensus 213 ~~v~~~GGva~n~~~~~~le~~l~~~-~--~--~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 213 GTVLCTGGLALDAGLLEALKDAIQEA-K--M--AVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred CcEEEECcccccHHHHHHHHHHhccC-C--c--ceEecCCCcchHHHHHHHHHcC
Confidence 47999999999999999999999532 1 1 2556667788888889999875
No 61
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=96.41 E-value=0.17 Score=51.61 Aligned_cols=44 Identities=34% Similarity=0.529 Sum_probs=40.3
Q ss_pred eEEecCCCCccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhc
Q 012375 387 VILTGGSACLPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGN 440 (465)
Q Consensus 387 IvLtGG~S~ipGl~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilas 440 (465)
||++||+++..++..-+++.|. .+|+.||++++.-=+||+++++
T Consensus 346 iv~~GGva~n~av~~ale~~lg----------~~V~vP~~~ql~GAiGAAL~a~ 389 (396)
T COG1924 346 IVLQGGVALNKAVVRALEDLLG----------RKVIVPPYAQLMGAIGAALIAK 389 (396)
T ss_pred EEEECcchhhHHHHHHHHHHhC----------CeeecCCccchhhHHHHHHHHh
Confidence 9999999999999999999985 6788899999998999999886
No 62
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=95.87 E-value=0.0059 Score=60.36 Aligned_cols=49 Identities=18% Similarity=0.375 Sum_probs=43.9
Q ss_pred ccccCCcHHHHHHHHhccCh-----HhhHhhhccchhhhhhccChHHHHHHHhh
Q 012375 36 GAFDQIPWDVLIQIVKLIGP-----KEAAKLCVVSKSWRALVSDNRLWIFFLQH 84 (465)
Q Consensus 36 ~~~~~~~~~~~~~i~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 84 (465)
-.+.-||-||++.|..-.-+ .++.++++||+-|+-.++||.|||.++..
T Consensus 105 ~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~K 158 (366)
T KOG2997|consen 105 ISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACLK 158 (366)
T ss_pred hhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHHH
Confidence 34677999999999886666 99999999999999999999999999874
No 63
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=95.85 E-value=0.059 Score=54.01 Aligned_cols=41 Identities=24% Similarity=0.235 Sum_probs=34.1
Q ss_pred CceEEEeecCceeEEEEEeeCeeeccccEEEEeccHHHHHHHHH
Q 012375 242 TSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLR 285 (465)
Q Consensus 242 ~tglVVDiG~~~T~v~PV~dG~vl~~~~~~~~~iGG~~lt~~L~ 285 (465)
.+++|+|+|+++|.++-+.+|.+... ..+++|...+++.+.
T Consensus 125 ~~~~v~DiGGGSte~~~~~~~~~~~~---~Sl~lG~vrl~e~f~ 165 (300)
T TIGR03706 125 ADGLVVDIGGGSTELILGKDFEPGEG---VSLPLGCVRLTEQFF 165 (300)
T ss_pred CCcEEEEecCCeEEEEEecCCCEeEE---EEEccceEEhHHhhC
Confidence 45799999999999998888887654 679999988887643
No 64
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=95.76 E-value=0.036 Score=58.15 Aligned_cols=155 Identities=15% Similarity=0.231 Sum_probs=95.2
Q ss_pred ccEEEeCCcceEEEEEec---C------CCCCcccc--cccccCCc-cchH-------HHHHHHHHHHHHhhcccCCCC-
Q 012375 126 GSVIIDGGSGYCKFGWSK---Y------DCPSGRTA--TFLEFGNI-ESPM-------YSRLRHFFATIYSRMQVKPST- 185 (465)
Q Consensus 126 ~~VVID~GS~~~K~Gfag---e------~~P~~~~~--s~~~~G~~-~~Pi-------~~~l~~~~~~~~~~L~v~~~~- 185 (465)
.+|=||+||.+|+.=||. + ..||+.+- .+++.+++ ..|+ .+.++.+.+.=|++.++.|++
T Consensus 4 ~SVGIDIGTSTTQlvfSrl~l~n~a~~~~vPri~I~dkeViYrS~I~fTPl~~~~~ID~~al~~iv~~eY~~Agi~p~~I 83 (473)
T PF06277_consen 4 LSVGIDIGTSTTQLVFSRLTLENRASGFSVPRIEIVDKEVIYRSPIYFTPLLSQTEIDAEALKEIVEEEYRKAGITPEDI 83 (473)
T ss_pred EEEEEeecCCceeEEEEEeEEEeccCCCccceEEEeccEEEecCCccccCCCCCCccCHHHHHHHHHHHHHHcCCCHHHC
Confidence 468899999999998884 2 12554432 12222222 2343 256788887778889998763
Q ss_pred --CCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhh-ccCCeEEEe----ecchHHHHhcC--------CCceEEEeec
Q 012375 186 --QPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-LNVPAVCAI----NQATLALYAAK--------RTSGIVVNIG 250 (465)
Q Consensus 186 --~pVll~ep~~~~~~~~~~~~~R~~~~e~l~e~lFE-~~vpav~~~----~~~vlalya~g--------~~tglVVDiG 250 (465)
--|++|-... .|++-.+ +.+.|-+ .| .-|.-. -++++|..|+| ..+-+=+|||
T Consensus 84 ~TGAVIITGETA----------rKeNA~~-v~~~Ls~~aG-DFVVATAGPdLEsiiAgkGsGA~~~S~~~~~~V~NiDIG 151 (473)
T PF06277_consen 84 DTGAVIITGETA----------RKENARE-VLHALSGFAG-DFVVATAGPDLESIIAGKGSGAAALSKEHHTVVANIDIG 151 (473)
T ss_pred ccccEEEecchh----------hhhhHHH-HHHHHHHhcC-CEEEEccCCCHHHHHhccCccHHHHhhhhCCeEEEEEeC
Confidence 5688885431 2222222 2232222 22 111111 24577777776 2344568999
Q ss_pred CceeEEEEEeeCeeeccccEEEEeccHHHH-----------HHHHHHHHHhcCCCC
Q 012375 251 FQVTSVVPILHGKVMRKVGVEVMGLGALKL-----------TGYLRLLMQQNNINF 295 (465)
Q Consensus 251 ~~~T~v~PV~dG~vl~~~~~~~~~iGG~~l-----------t~~L~~lL~~~~~~~ 295 (465)
.++|.++-+-+|.++.. ++ +++||+.+ ..-++.+++..+...
T Consensus 152 GGTtN~avf~~G~v~~T-~c--l~IGGRLi~~d~~g~i~yis~~~~~l~~~~~~~~ 204 (473)
T PF06277_consen 152 GGTTNIAVFDNGEVIDT-AC--LDIGGRLIEFDPDGRITYISPPIQRLLEELGLEL 204 (473)
T ss_pred CCceeEEEEECCEEEEE-EE--EeeccEEEEEcCCCcEEEECHHHHHHHHHhCCCC
Confidence 99999999999999876 34 79999843 445667777766654
No 65
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=95.71 E-value=0.082 Score=54.06 Aligned_cols=81 Identities=21% Similarity=0.137 Sum_probs=52.6
Q ss_pred HHhHHHHHHHHHHHHhhccCCeEEEeecchHHHHhcC------CCceEEEeecCceeEEE--EEeeCeeeccccEEEEec
Q 012375 204 KASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAK------RTSGIVVNIGFQVTSVV--PILHGKVMRKVGVEVMGL 275 (465)
Q Consensus 204 ~~~R~~~~e~l~e~lFE~~vpav~~~~~~vlalya~g------~~tglVVDiG~~~T~v~--PV~dG~vl~~~~~~~~~i 275 (465)
.+.|+..++.=. + .|..-+-+++.|.+|+.++| ..+-+|.|+|.++-+|. -|-+|.----++--...+
T Consensus 185 DAQrQATKDAGt-I---AgLnV~RIiNePTaAAIAYGLDKk~gEknilVfDLGGGTFDVSlLtIdnGVFeVlaTnGDThL 260 (663)
T KOG0100|consen 185 DAQRQATKDAGT-I---AGLNVVRIINEPTAAAIAYGLDKKDGEKNILVFDLGGGTFDVSLLTIDNGVFEVLATNGDTHL 260 (663)
T ss_pred hHHHhhhcccce-e---ccceEEEeecCccHHHHHhcccccCCcceEEEEEcCCceEEEEEEEEcCceEEEEecCCCccc
Confidence 456654433211 1 56677888999999999887 36779999999987654 455565311112233578
Q ss_pred cHHHHHHHHHHHH
Q 012375 276 GALKLTGYLRLLM 288 (465)
Q Consensus 276 GG~~lt~~L~~lL 288 (465)
||.++++.+.+.+
T Consensus 261 GGEDFD~rvm~~f 273 (663)
T KOG0100|consen 261 GGEDFDQRVMEYF 273 (663)
T ss_pred CccchHHHHHHHH
Confidence 9998887665543
No 66
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=95.11 E-value=0.18 Score=54.19 Aligned_cols=39 Identities=18% Similarity=0.179 Sum_probs=32.1
Q ss_pred CceEEEeecCceeEEEEEeeCeeeccccEEEEeccHHHHHHH
Q 012375 242 TSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGY 283 (465)
Q Consensus 242 ~tglVVDiG~~~T~v~PV~dG~vl~~~~~~~~~iGG~~lt~~ 283 (465)
.+++|||||+++|.++-+-+|.+... ..+++|.-.+++.
T Consensus 132 ~~~lviDIGGGStEl~~~~~~~~~~~---~Sl~lG~vrl~e~ 170 (496)
T PRK11031 132 DQRLVVDIGGASTELVTGTGAQATSL---FSLSMGCVTWLER 170 (496)
T ss_pred CCEEEEEecCCeeeEEEecCCceeee---eEEeccchHHHHH
Confidence 35899999999999998888887654 6789999887654
No 67
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=94.53 E-value=0.33 Score=49.05 Aligned_cols=125 Identities=17% Similarity=0.274 Sum_probs=71.1
Q ss_pred EeCCcceEEEEEecCCCCCcccccccccCCccchHHH---HHHHHHHHHHhhcccCCCCCCeEEEecCCCCCCccchHHh
Q 012375 130 IDGGSGYCKFGWSKYDCPSGRTATFLEFGNIESPMYS---RLRHFFATIYSRMQVKPSTQPIVVSIPICHYDDTENAKAS 206 (465)
Q Consensus 130 ID~GS~~~K~Gfage~~P~~~~~s~~~~G~~~~Pi~~---~l~~~~~~~~~~L~v~~~~~pVll~ep~~~~~~~~~~~~~ 206 (465)
+|+|..++|+-.-.++ ..... +-...-|||. .+...+..+.+.+... ..+-|.||-.... . -.+
T Consensus 3 ~DiGGA~~K~a~~~~~---g~~~~---v~~~~~plW~~~~~L~~~l~~~~~~~~~~-~~~avtMTgELaD---~---f~~ 69 (318)
T TIGR03123 3 IDIGGANTKAAELDED---GRIKE---VHQLYCPLWKGNDKLAETLKEISQDLSSA-DNVAVTMTGELAD---C---FED 69 (318)
T ss_pred cccccceeeeEEecCC---CceeE---EEEecCcccCCchHHHHHHHHHHHhcCcc-ceEEEEeehhhhh---h---hcC
Confidence 7999999999855322 21111 1124568875 4555555555555321 5677888844321 1 123
Q ss_pred HHHHHHHHHHHHhh-ccCCeEEEeecc-hH---------------------HHHhcCCCceEEEeecCceeEEEEEeeCe
Q 012375 207 RRQLKDCFQQVLFD-LNVPAVCAINQA-TL---------------------ALYAAKRTSGIVVNIGFQVTSVVPILHGK 263 (465)
Q Consensus 207 R~~~~e~l~e~lFE-~~vpav~~~~~~-vl---------------------alya~g~~tglVVDiG~~~T~v~PV~dG~ 263 (465)
|+.=.+.+.+.+-+ |+.+-..+..+. ++ +.++....++|++|+|..+|+|+||.+|.
T Consensus 70 r~~GV~~i~~~~~~~~~~~~~i~~s~GG~~s~~~a~~~pv~~~~Sg~~a~A~~la~~~~~~I~~DmGGTTtDi~~i~~G~ 149 (318)
T TIGR03123 70 KAEGVEFILAAVESAFGSPVSVFASDGGFVSAEEALTNPLDVAAANWLATAQLIAKRIPECLFVDMGSTTTDIIPIIDGE 149 (318)
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEecCCCCccHHHHHHhHHHHHHhhHHHHHHHHHhcCCCEEEEEcCccceeeEEecCCE
Confidence 43323334444444 655433332211 11 12222367899999999999999999999
Q ss_pred eecc
Q 012375 264 VMRK 267 (465)
Q Consensus 264 vl~~ 267 (465)
+...
T Consensus 150 p~~~ 153 (318)
T TIGR03123 150 VAAK 153 (318)
T ss_pred eeee
Confidence 8653
No 68
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=94.28 E-value=0.48 Score=46.58 Aligned_cols=79 Identities=16% Similarity=0.122 Sum_probs=56.0
Q ss_pred ccCCeEEEeecchHHHHhcCCCce-----EEEeecCceeEEEEEeeCeeeccccEEEEeccHHHHHHHHHHHHHhcCCCC
Q 012375 221 LNVPAVCAINQATLALYAAKRTSG-----IVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNINF 295 (465)
Q Consensus 221 ~~vpav~~~~~~vlalya~g~~tg-----lVVDiG~~~T~v~PV~dG~vl~~~~~~~~~iGG~~lt~~L~~lL~~~~~~~ 295 (465)
++++.---..++-+|..|+-.|-| .|+|+|.++|+..-|-....+.. .++-=+|+-+|-.+..-|- +
T Consensus 108 lgv~V~igGvEAemAi~GALTTPGt~~PlaIlDmG~GSTDAsii~~~g~v~~---iHlAGAG~mVTmlI~sELG-----l 179 (332)
T PF08841_consen 108 LGVPVEIGGVEAEMAILGALTTPGTDKPLAILDMGGGSTDASIINRDGEVTA---IHLAGAGNMVTMLINSELG-----L 179 (332)
T ss_dssp HTSEEEEECEHHHHHHHHHTTSTT--SSEEEEEE-SSEEEEEEE-TTS-EEE---EEEE-SHHHHHHHHHHHCT------
T ss_pred HCCceEEccccHHHHHhcccCCCCCCCCeEEEecCCCcccHHHhCCCCcEEE---EEecCCchhhHHHHHHhhC-----C
Confidence 999988888999999999865444 78999999999887765554443 3345567888877665543 3
Q ss_pred CcHHHHHHHHHh
Q 012375 296 GSLYTVRTLKEK 307 (465)
Q Consensus 296 ~~~~~v~~iKe~ 307 (465)
.+.+++|+||+.
T Consensus 180 ~d~~lAE~IKky 191 (332)
T PF08841_consen 180 EDRELAEDIKKY 191 (332)
T ss_dssp S-HHHHHHHHHS
T ss_pred CCHHHHHHhhhc
Confidence 467899999985
No 69
>PRK10854 exopolyphosphatase; Provisional
Probab=93.23 E-value=0.61 Score=50.41 Aligned_cols=39 Identities=18% Similarity=0.154 Sum_probs=31.2
Q ss_pred CceEEEeecCceeEEEEEeeCeeeccccEEEEeccHHHHHHH
Q 012375 242 TSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGY 283 (465)
Q Consensus 242 ~tglVVDiG~~~T~v~PV~dG~vl~~~~~~~~~iGG~~lt~~ 283 (465)
.+++|||||+++|.++-+-+|.+... ...++|.-.+++.
T Consensus 137 ~~~lvvDIGGGStEl~~~~~~~~~~~---~S~~lG~vrl~e~ 175 (513)
T PRK10854 137 GRKLVIDIGGGSTELVIGENFEPILV---ESRRMGCVSFAQL 175 (513)
T ss_pred CCeEEEEeCCCeEEEEEecCCCeeEe---EEEecceeeHHhh
Confidence 35899999999999998888876543 5568888777763
No 70
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=93.23 E-value=0.91 Score=49.62 Aligned_cols=96 Identities=18% Similarity=0.172 Sum_probs=68.5
Q ss_pred CCCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhhccCCeEEEeecchHHHHhcCC------------CceEEEeecCc
Q 012375 185 TQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKR------------TSGIVVNIGFQ 252 (465)
Q Consensus 185 ~~pVll~ep~~~~~~~~~~~~~R~~~~e~l~e~lFE~~vpav~~~~~~vlalya~g~------------~tglVVDiG~~ 252 (465)
-.+++|..|.+.+ ...|+.+++.. ++ .|+.-+-++++..+++.++|. .+-+-||+||+
T Consensus 137 v~DcvIavP~~FT------d~qRravldAA-~i---agLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS 206 (727)
T KOG0103|consen 137 VSDCVIAVPSYFT------DSQRRAVLDAA-RI---AGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHS 206 (727)
T ss_pred CCCeeEecccccc------HHHHHHHHhHH-hh---cCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccc
Confidence 3467888888774 46677777644 33 899999999999999988883 23688999999
Q ss_pred eeEEEEEee--CeeeccccEEEEeccHHHHHHHHHHHHHh
Q 012375 253 VTSVVPILH--GKVMRKVGVEVMGLGALKLTGYLRLLMQQ 290 (465)
Q Consensus 253 ~T~v~PV~d--G~vl~~~~~~~~~iGG~~lt~~L~~lL~~ 290 (465)
.+++.-..- |..-.-++.-.-.+||++.++.|.+.+..
T Consensus 207 ~~q~si~aF~kG~lkvl~ta~D~~lGgr~fDe~L~~hfa~ 246 (727)
T KOG0103|consen 207 SYQVSIAAFTKGKLKVLATAFDRKLGGRDFDEALIDHFAK 246 (727)
T ss_pred cceeeeeeeccCcceeeeeecccccccchHHHHHHHHHHH
Confidence 998875543 33211112233479999999998887754
No 71
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=92.75 E-value=12 Score=37.47 Aligned_cols=45 Identities=20% Similarity=0.293 Sum_probs=35.6
Q ss_pred ccCCeEEEeecchHHHHhc-------CCCceEEEeecCceeEEEEEeeCeeecc
Q 012375 221 LNVPAVCAINQATLALYAA-------KRTSGIVVNIGFQVTSVVPILHGKVMRK 267 (465)
Q Consensus 221 ~~vpav~~~~~~vlalya~-------g~~tglVVDiG~~~T~v~PV~dG~vl~~ 267 (465)
+++| +++.+++-+++++- +..+.++|.+|.+. -..-|.+|.++..
T Consensus 97 ~~~p-v~v~NDa~~~alaE~~~g~~~~~~~~~~v~igtGi-G~giv~~G~~~~G 148 (318)
T TIGR00744 97 VGLP-VVVENDANAAALGEYKKGAGKGARDVICITLGTGL-GGGIIINGEIRHG 148 (318)
T ss_pred HCCC-EEEechHHHHHHHHHHhcccCCCCcEEEEEeCCcc-EEEEEECCEEeec
Confidence 8887 88999888887742 45788999999876 6666889998764
No 72
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=92.55 E-value=0.46 Score=46.64 Aligned_cols=66 Identities=24% Similarity=0.301 Sum_probs=43.0
Q ss_pred HHHHHHHHHhhcCCCCccccccccCceEEecCCCCccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhh
Q 012375 361 LDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVG 439 (465)
Q Consensus 361 L~~~I~~sI~~~~~~dl~~r~~l~~NIvLtGG~S~ipGl~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsila 439 (465)
|.+.+...+.+... . +. .|+++||......+.+.|.+.|++..+.. .+. .+..+.+.+.+||.++|
T Consensus 206 la~~i~~~~~~~~~-~----~~---~v~l~GGv~~~~~~~~~l~~~l~~~~~~~---~~~--~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 206 LAELIKAVLKRLGP-E----KE---PVVLSGGVFKNSPLVKALRDALKEKLPKV---PII--IPVEPQYDPAYGAALLA 271 (271)
T ss_dssp HHHHHHHHHHTCTC-C----CC---SEEEESGGGGCHHHHHHHGGGS-HHHHCC---TCE--CECCGSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-C----CC---eEEEECCccCchHHHHHHHHHHHHhcCCC---ceE--ECCCCCccHHHHHHHhC
Confidence 56666666666654 1 11 19999999888777777766665544442 122 33456889999999986
No 73
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=92.44 E-value=0.58 Score=50.10 Aligned_cols=60 Identities=25% Similarity=0.346 Sum_probs=40.7
Q ss_pred ccCCeEEEee---cchHHHHhc----C-CCceEEEeecCceeEEEEEeeCeeeccccEEEEeccHHHHHHHH
Q 012375 221 LNVPAVCAIN---QATLALYAA----K-RTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYL 284 (465)
Q Consensus 221 ~~vpav~~~~---~~vlalya~----g-~~tglVVDiG~~~T~v~PV~dG~vl~~~~~~~~~iGG~~lt~~L 284 (465)
+|.+ +.++. ++-++.+|. + ...++|+|+|+++|.++-+-+..+.. ....++|+-.+++.+
T Consensus 101 ~G~~-ievIsGeeEArl~~lGv~~~~~~~~~~lv~DIGGGStEl~~g~~~~~~~---~~Sl~~G~v~lt~~~ 168 (492)
T COG0248 101 LGLP-IEVISGEEEARLIYLGVASTLPRKGDGLVIDIGGGSTELVLGDNFEIGL---LISLPLGCVRLTERF 168 (492)
T ss_pred hCCc-eEEeccHHHHHHHHHHHHhcCCCCCCEEEEEecCCeEEEEEecCCccce---eEEeecceEEeehhh
Confidence 7774 44443 445554444 3 57789999999999999776555543 367889877666554
No 74
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=92.17 E-value=0.64 Score=45.12 Aligned_cols=123 Identities=23% Similarity=0.276 Sum_probs=69.0
Q ss_pred ccEEEeCCcceEEEEEecCCCCCcccccccccCCccchHHH---HHHHHHHHHHhhcccCCCCCCeEEEecCCCCCCccc
Q 012375 126 GSVIIDGGSGYCKFGWSKYDCPSGRTATFLEFGNIESPMYS---RLRHFFATIYSRMQVKPSTQPIVVSIPICHYDDTEN 202 (465)
Q Consensus 126 ~~VVID~GS~~~K~Gfage~~P~~~~~s~~~~G~~~~Pi~~---~l~~~~~~~~~~L~v~~~~~pVll~ep~~~~~~~~~ 202 (465)
..+=||+|..++|+.-+.-+. .. ..-+.-|||. +++..+..+-.+ -++.---|+||-....
T Consensus 4 kilGiDIGGAntk~a~~DG~~--~~------~d~~YlPMWk~k~rL~~~Lkei~~k--~~~~~vgvvMTaELaD------ 67 (330)
T COG1548 4 KILGIDIGGANTKIASSDGDN--YK------IDHIYLPMWKKKDRLEETLKEIVHK--DNVDYVGVVMTAELAD------ 67 (330)
T ss_pred eEEEeeccCccchhhhccCCe--ee------eeEEEeccccchhHHHHHHHHHhcc--CCcceeEEEeeHHHHH------
Confidence 567899999999997642111 11 1113568874 565555443322 1222345777743321
Q ss_pred hHHhHHHHHHHHHHHHhh-ccCCeEEEe-ecchHH---------HHhc------------CCCceEEEeecCceeEEEEE
Q 012375 203 AKASRRQLKDCFQQVLFD-LNVPAVCAI-NQATLA---------LYAA------------KRTSGIVVNIGFQVTSVVPI 259 (465)
Q Consensus 203 ~~~~R~~~~e~l~e~lFE-~~vpav~~~-~~~vla---------lya~------------g~~tglVVDiG~~~T~v~PV 259 (465)
.-..|++=.|.+.+.+-. |++|--++- +..+.+ .-++ -..+++.||+|..+|+|+||
T Consensus 68 ~f~tk~eGVe~Ii~~v~~Af~~pv~~v~~~G~~~ssEa~~~~~~vAAaNW~Ata~~~~e~~~dsci~VD~GSTTtDIIPi 147 (330)
T COG1548 68 AFKTKAEGVEDIIDTVEKAFNCPVYVVDVNGNFLSSEALKNPREVAAANWVATARFLAEEIKDSCILVDMGSTTTDIIPI 147 (330)
T ss_pred HhhhHHhHHHHHHHHHHHhcCCceEEEeccCcCcChhHhcCHHHHHHhhhHHHHHHHHHhcCCceEEEecCCcccceEee
Confidence 122344444555555444 888853332 211111 0011 14679999999999999999
Q ss_pred eeCee
Q 012375 260 LHGKV 264 (465)
Q Consensus 260 ~dG~v 264 (465)
.+|..
T Consensus 148 ~~ge~ 152 (330)
T COG1548 148 KDGEA 152 (330)
T ss_pred cchhh
Confidence 99973
No 75
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=92.12 E-value=0.11 Score=53.51 Aligned_cols=39 Identities=23% Similarity=0.448 Sum_probs=35.5
Q ss_pred ccccCCcHHHHHHHHhcc-ChHhhHhhhccchhhhhhccC
Q 012375 36 GAFDQIPWDVLIQIVKLI-GPKEAAKLCVVSKSWRALVSD 74 (465)
Q Consensus 36 ~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~ 74 (465)
..-..||.|++..|.+.| ...|.+|+..+|+.||++|.-
T Consensus 2 ~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 2 ADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred CChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 345689999999999999 999999999999999999985
No 76
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=92.03 E-value=0.81 Score=48.71 Aligned_cols=92 Identities=18% Similarity=0.145 Sum_probs=61.3
Q ss_pred eEEEecCCCCCCccchHHhHHHHHHHHHHHHhhccCCeEEEeecchHHHHhcCC-----CceEEEeecCceeEEE--EEe
Q 012375 188 IVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAAKR-----TSGIVVNIGFQVTSVV--PIL 260 (465)
Q Consensus 188 Vll~ep~~~~~~~~~~~~~R~~~~e~l~e~lFE~~vpav~~~~~~vlalya~g~-----~tglVVDiG~~~T~v~--PV~ 260 (465)
.+++.|.+.. ...|+.. .-.-++ .+-.-+-.++.|.+|+.++|. .+-.|-|+|.+...|. -|.
T Consensus 163 avvtvpAyfn------dsqRqaT-kdag~i---agl~vlrvineptaaalaygld~k~~g~iaV~dLgggtfdisilei~ 232 (640)
T KOG0102|consen 163 AVITVPAYFN------DSQRQAT-KDAGQI---AGLNVLRVINEPTAAALAYGLDKKEDGVIAVFDLGGGTFDISILEIE 232 (640)
T ss_pred eeeccHHHHh------HHHHHHh-Hhhhhh---ccceeeccCCccchhHHhhcccccCCCceEEEEcCCceeeeeeehhc
Confidence 4666665542 3344433 334444 677778888999999999983 3457899998876654 456
Q ss_pred eCeeeccccEEEEeccHHHHHHHHHHHHH
Q 012375 261 HGKVMRKVGVEVMGLGALKLTGYLRLLMQ 289 (465)
Q Consensus 261 dG~vl~~~~~~~~~iGG~~lt~~L~~lL~ 289 (465)
+|...-..+.-..-.||.+++.++..++-
T Consensus 233 ~gvfevksTngdtflggedfd~~~~~~~v 261 (640)
T KOG0102|consen 233 DGVFEVKSTNGDTHLGGEDFDNALVRFIV 261 (640)
T ss_pred cceeEEEeccCccccChhHHHHHHHHHHH
Confidence 67654332334456899999999888764
No 77
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=90.15 E-value=0.54 Score=48.61 Aligned_cols=53 Identities=19% Similarity=0.165 Sum_probs=43.0
Q ss_pred cccCceEEecCCCCccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhh
Q 012375 382 AWFKTVILTGGSACLPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVG 439 (465)
Q Consensus 382 ~l~~NIvLtGG~S~ipGl~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsila 439 (465)
.+-..|+++||.++-+|+.+.|+++|....+ +.+|+.++++++..=+||+++|
T Consensus 380 ~i~~~VvftGGvA~N~gvv~aLe~~L~~~~~-----~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 380 GITDQFTFTGGVAKNEAAVKELRKLIKENYG-----EVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred CCCCCEEEECCccccHHHHHHHHHHHccccC-----CCeEecCCCccHHHHHHHHHhC
Confidence 4557899999999999999999999964332 2456668888999889999875
No 78
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=89.11 E-value=1.7 Score=37.28 Aligned_cols=59 Identities=22% Similarity=0.274 Sum_probs=39.6
Q ss_pred EEEeecCceeEEEEEeeCeeeccccEEEEecc--------HHHHH--HHHHHHHHhcCCCCCcHHHHHHH-HHhccccc
Q 012375 245 IVVNIGFQVTSVVPILHGKVMRKVGVEVMGLG--------ALKLT--GYLRLLMQQNNINFGSLYTVRTL-KEKLCYVA 312 (465)
Q Consensus 245 lVVDiG~~~T~v~PV~dG~vl~~~~~~~~~iG--------G~~lt--~~L~~lL~~~~~~~~~~~~v~~i-Ke~~c~v~ 312 (465)
++||+|.++|.++-...|.... ...+++| |.+++ +.+.+-++. ..+.+|++ |.+...+.
T Consensus 2 ~~iDiGs~~~~~~i~~~~~~~~---~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~~------a~~~AE~~~k~~i~~v~ 71 (120)
T PF14450_consen 2 VVIDIGSSKTKVAIAEDGSDGY---IRVLGVGEVPSKGIKGGHITDIEDISKAIKI------AIEEAERLAKCEIGSVY 71 (120)
T ss_dssp EEEEE-SSSEEEEEEETTEEEE---EEEES----------HHHHH--HHHHHHHT--------HHHHHHH-HHHH--S-
T ss_pred EEEEcCCCcEEEEEEEeCCCCc---EEEEEEecccccccCCCEEEEHHHHHHHHHH------HHHHHHHHhCCeeeEEE
Confidence 6899999999999666666543 4778999 99999 888877765 35677887 77755443
No 79
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=88.09 E-value=0.41 Score=48.13 Aligned_cols=72 Identities=19% Similarity=0.475 Sum_probs=59.5
Q ss_pred cccCCc----HHHHHHHHhccChHhhHhhhccchhhhhhccChHHHHHHHhhcC------------CCCCcceeeccccc
Q 012375 37 AFDQIP----WDVLIQIVKLIGPKEAAKLCVVSKSWRALVSDNRLWIFFLQHQQ------------EPWDSIFFGETTLG 100 (465)
Q Consensus 37 ~~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~------------~~~~~~~~~~~~~~ 100 (465)
..+.|| ..+...|++-|.-.++|.--++||-|+.+..|+.+|+....+-- +.|+.-.|...+-.
T Consensus 74 Fi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkLie~~vr~dslWrgl~e~rqw~~~lf~~r~~~ 153 (499)
T KOG0281|consen 74 FITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKKLIERMVRTDSLWRGLSERRQWDQYLFKNRPND 153 (499)
T ss_pred HHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHHHHHHhcchHHHHhhhhhccCcchhhccCCCCc
Confidence 367899 89999999999999999999999999999999999998876532 44888888877666
Q ss_pred CCCCcccc
Q 012375 101 SGYPYQTL 108 (465)
Q Consensus 101 ~~~~~~~~ 108 (465)
-|+|-..|
T Consensus 154 ~~~~~n~f 161 (499)
T KOG0281|consen 154 GGFPPNSF 161 (499)
T ss_pred CCcCCCcc
Confidence 66554444
No 80
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=87.10 E-value=1.7 Score=42.97 Aligned_cols=43 Identities=30% Similarity=0.467 Sum_probs=35.1
Q ss_pred CCCceEEEeecCceeEEEEEeeCeeeccccEEEEeccHHHHHHHHH
Q 012375 240 KRTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLR 285 (465)
Q Consensus 240 g~~tglVVDiG~~~T~v~PV~dG~vl~~~~~~~~~iGG~~lt~~L~ 285 (465)
...+++|+|+|+++|.++-+-+|.+... ..+++|.-.+++.+.
T Consensus 110 ~~~~~lviDIGGGStEl~~~~~~~~~~~---~Sl~lG~vrl~e~~~ 152 (285)
T PF02541_consen 110 PDKNGLVIDIGGGSTELILFENGKVVFS---QSLPLGAVRLTERFF 152 (285)
T ss_dssp TTSSEEEEEEESSEEEEEEEETTEEEEE---EEES--HHHHHHHHS
T ss_pred ccCCEEEEEECCCceEEEEEECCeeeEe---eeeehHHHHHHHHHh
Confidence 5678999999999999999999998764 779999988887653
No 81
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=85.73 E-value=0.53 Score=46.89 Aligned_cols=46 Identities=30% Similarity=0.491 Sum_probs=42.8
Q ss_pred ccccCCcHHHHHHHHhccChHhhHhhhccchhhhhhccChHHHHHH
Q 012375 36 GAFDQIPWDVLIQIVKLIGPKEAAKLCVVSKSWRALVSDNRLWIFF 81 (465)
Q Consensus 36 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 81 (465)
..+++||-+++++|-+.|--+|+.|.+.+||=|.-..+|.+||...
T Consensus 96 v~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~l 141 (419)
T KOG2120|consen 96 VSWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTL 141 (419)
T ss_pred CCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeee
Confidence 4489999999999999999999999999999999999999999643
No 82
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=85.05 E-value=0.95 Score=45.17 Aligned_cols=33 Identities=24% Similarity=0.231 Sum_probs=23.1
Q ss_pred HHH-hcCCCceEEEeecCceeEEEEEeeCeeecc
Q 012375 235 ALY-AAKRTSGIVVNIGFQVTSVVPILHGKVMRK 267 (465)
Q Consensus 235 aly-a~g~~tglVVDiG~~~T~v~PV~dG~vl~~ 267 (465)
+++ ..|..++|+||||..+|+|.+|.+|.+...
T Consensus 69 a~~~~~g~~~~i~vDmGGTTtDi~~i~~G~p~~~ 102 (290)
T PF01968_consen 69 AAARLTGLENAIVVDMGGTTTDIALIKDGRPEIS 102 (290)
T ss_dssp HHH--HT-SSEEEEEE-SS-EEEEEEETTEE---
T ss_pred hhhhcCCCCCEEEEeCCCCEEEEEEEECCeeecc
Confidence 444 457889999999999999999999998643
No 83
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=84.47 E-value=1.3 Score=43.13 Aligned_cols=49 Identities=14% Similarity=0.392 Sum_probs=43.3
Q ss_pred cccCCcHHHHHHHHhccCh-HhhHhhhccchhhhhhccChHHHHHHHhhc
Q 012375 37 AFDQIPWDVLIQIVKLIGP-KEAAKLCVVSKSWRALVSDNRLWIFFLQHQ 85 (465)
Q Consensus 37 ~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 85 (465)
.|..||.++++.||..|+- .|+.-++=+-..-..++.|.++|+..++-+
T Consensus 201 tl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfH 250 (332)
T KOG3926|consen 201 TLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFH 250 (332)
T ss_pred CcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999886 488888888888899999999999988763
No 84
>PRK13321 pantothenate kinase; Reviewed
Probab=83.78 E-value=14 Score=36.07 Aligned_cols=18 Identities=33% Similarity=0.399 Sum_probs=15.9
Q ss_pred EEEeCCcceEEEEEecCC
Q 012375 128 VIIDGGSGYCKFGWSKYD 145 (465)
Q Consensus 128 VVID~GS~~~K~Gfage~ 145 (465)
+.||+|.-++|+|...++
T Consensus 3 L~IDIGnT~ik~gl~~~~ 20 (256)
T PRK13321 3 LLIDVGNTNIKLGVFDGD 20 (256)
T ss_pred EEEEECCCeEEEEEEECC
Confidence 789999999999998654
No 85
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=82.33 E-value=2.1 Score=36.14 Aligned_cols=50 Identities=12% Similarity=0.312 Sum_probs=42.4
Q ss_pred cccCCcHHHHHHHHhccChHhhHhhhccchhhhhhccChHHHHHHHhhcCCC
Q 012375 37 AFDQIPWDVLIQIVKLIGPKEAAKLCVVSKSWRALVSDNRLWIFFLQHQQEP 88 (465)
Q Consensus 37 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 88 (465)
.+..+|.+++--|+.-++|..+.++=..|..-.. .++.||+.|+.+|-|.
T Consensus 3 dvG~~py~ll~piL~~~~~~QL~~iE~~np~l~~--~tdeLW~~~i~rdFp~ 52 (109)
T PF06881_consen 3 DVGDVPYHLLRPILEKCSPEQLRRIEDNNPHLIE--DTDELWKKLIKRDFPE 52 (109)
T ss_pred ccCCCCHHHHHHHHccCCHHHHHHHHHhCCCcch--hhHHHHHHHHHhHCcC
Confidence 4567999999999999999999999998854433 4789999999998754
No 86
>PRK13317 pantothenate kinase; Provisional
Probab=80.33 E-value=2.1 Score=42.51 Aligned_cols=72 Identities=17% Similarity=0.130 Sum_probs=49.6
Q ss_pred CHHHHHHHHHhhcCCCCccccccccCceEEec-CCCCccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHh
Q 012375 360 GLDQAVALCMDHCHYAELSGDDAWFKTVILTG-GSACLPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLV 438 (465)
Q Consensus 360 ~L~~~I~~sI~~~~~~dl~~r~~l~~NIvLtG-G~S~ipGl~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsil 438 (465)
+|..+|.+.|..... -. .|..-.++|+++| |.+..|++.++|.+.++.. +.+++-++++++..=+||+++
T Consensus 201 sl~~~v~~~I~~lA~-~~-ar~~~~~~Ivf~G~gla~n~~l~~~l~~~l~~~-------~~~~~~p~~~~~~gAlGAaL~ 271 (277)
T PRK13317 201 GVIGLVGEVITTLSI-QA-AREKNIENIVYIGSTLTNNPLLQEIIESYTKLR-------NCTPIFLENGGYSGAIGALLL 271 (277)
T ss_pred HHHHHHHHHHHHHHH-HH-HHhcCCCeEEEECcccccCHHHHHHHHHHHhcC-------CceEEecCCCchhHHHHHHHH
Confidence 555666555554321 00 1223337999999 7999999999999877521 256666778889999999988
Q ss_pred hc
Q 012375 439 GN 440 (465)
Q Consensus 439 as 440 (465)
+.
T Consensus 272 a~ 273 (277)
T PRK13317 272 AT 273 (277)
T ss_pred hh
Confidence 64
No 87
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=80.13 E-value=75 Score=32.63 Aligned_cols=33 Identities=27% Similarity=0.417 Sum_probs=25.0
Q ss_pred ceEEecCCCCccchHHHHHHHHHhcCCCCCCCceEEeCC
Q 012375 386 TVILTGGSACLPGLAERLEKELRGLLPSSISNGIRVIPP 424 (465)
Q Consensus 386 NIvLtGG~S~ipGl~eRL~~EL~~l~p~~~~~~v~v~~~ 424 (465)
-||++||.+.-+-+.+++++.+..+.| |.+++-
T Consensus 296 ~IV~gGGI~e~~~l~~~I~~~l~~~a~------v~~~pg 328 (351)
T TIGR02707 296 AIVLTGGLAYSKYFVSEIIKRVSFIAP------VLVYPG 328 (351)
T ss_pred EEEEcchhhcCHHHHHHHHHHHHhhCC------EEEeCC
Confidence 489999998877788888888877643 666643
No 88
>PRK03011 butyrate kinase; Provisional
Probab=78.41 E-value=86 Score=32.31 Aligned_cols=46 Identities=26% Similarity=0.317 Sum_probs=32.4
Q ss_pred CceEEecCCCCccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhH
Q 012375 385 KTVILTGGSACLPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAK 436 (465)
Q Consensus 385 ~NIvLtGG~S~ipGl~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggs 436 (465)
.-|||+||.+.-+-|.+++++.+..+. .+.|........+.-.||.
T Consensus 297 D~IVlgGGI~~~~~l~~~I~~~l~~~~------pv~i~p~~~e~~A~a~GA~ 342 (358)
T PRK03011 297 DAIVLTGGLAYSKRLVERIKERVSFIA------PVIVYPGEDEMEALAEGAL 342 (358)
T ss_pred CEEEEeCccccCHHHHHHHHHHHHhhC------CeEEEeCCCHHHHHHHHHH
Confidence 348999999887778888888887663 3777776655445555643
No 89
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=78.22 E-value=4.5 Score=40.85 Aligned_cols=140 Identities=16% Similarity=0.188 Sum_probs=77.9
Q ss_pred ccEEEeCCcceEEEEEec---------CCCCCcccccc--cccCC-ccchH-------HHHHHHHHHHHHhhcccCCC--
Q 012375 126 GSVIIDGGSGYCKFGWSK---------YDCPSGRTATF--LEFGN-IESPM-------YSRLRHFFATIYSRMQVKPS-- 184 (465)
Q Consensus 126 ~~VVID~GS~~~K~Gfag---------e~~P~~~~~s~--~~~G~-~~~Pi-------~~~l~~~~~~~~~~L~v~~~-- 184 (465)
..|=||+|+.++.+=|+. ...||+.+-.. ..... +-.|+ .+.++.+...=|...++.|+
T Consensus 6 lSVGIDiGTsTTQvifS~lel~Nmas~~~VPri~ii~kdi~~rS~i~FTPv~~q~~id~~alk~~v~eeY~~AGi~pesi 85 (473)
T COG4819 6 LSVGIDIGTSTTQVIFSKLELVNMASVSQVPRIEIIKKDISWRSPIFFTPVDKQGGIDEAALKKLVLEEYQAAGIAPESI 85 (473)
T ss_pred eeeeeeccCceeeeeeeeeEEeecccccccceEEEEecceeeecceeeeeecccCCccHHHHHHHHHHHHHHcCCChhcc
Confidence 468899999999998874 23466543210 00000 11122 24566666555677888876
Q ss_pred -CCCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhhccCCeEEEee------cchHHHHhcC-------CCce-EEEee
Q 012375 185 -TQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAIN------QATLALYAAK-------RTSG-IVVNI 249 (465)
Q Consensus 185 -~~pVll~ep~~~~~~~~~~~~~R~~~~e~l~e~lFE~~vpav~~~~------~~vlalya~g-------~~tg-lVVDi 249 (465)
.-.|+++....- +++-++.+.-. -+...=+++- +++.|--++| +.++ +=+||
T Consensus 86 ~sGAvIITGEtAr----------k~NA~~vl~al---Sg~aGDFVVAtAGPdLESiIAGkGaGA~t~Seqr~t~v~NlDI 152 (473)
T COG4819 86 DSGAVIITGETAR----------KRNARPVLMAL---SGSAGDFVVATAGPDLESIIAGKGAGAQTLSEQRLTRVLNLDI 152 (473)
T ss_pred ccccEEEeccccc----------cccchHHHHHh---hhcccceEEEecCCCHHHHhccCCccccchhhhhceEEEEEec
Confidence 356788744321 11112222221 2222222221 2233333333 2222 45799
Q ss_pred cCceeEEEEEeeCeeeccccEEEEeccHHHHH
Q 012375 250 GFQVTSVVPILHGKVMRKVGVEVMGLGALKLT 281 (465)
Q Consensus 250 G~~~T~v~PV~dG~vl~~~~~~~~~iGG~~lt 281 (465)
|.++|...-.-.|.+... ++ +++||+.+.
T Consensus 153 GGGTtN~slFD~Gkv~dT-aC--LdiGGRLik 181 (473)
T COG4819 153 GGGTTNYSLFDAGKVSDT-AC--LDIGGRLIK 181 (473)
T ss_pred cCCccceeeecccccccc-ee--eecCcEEEE
Confidence 999999998888998876 44 799998553
No 90
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=77.91 E-value=7.3 Score=38.42 Aligned_cols=74 Identities=19% Similarity=0.185 Sum_probs=43.4
Q ss_pred HHHHHHHHHhhcCCCCccccccccCceEEecCCCCccchHHHHHHHHHhcCCCC-CCCceEEeCCCCCcchhhhhhHHhh
Q 012375 361 LDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGLAERLEKELRGLLPSS-ISNGIRVIPPPYGADTAWFGAKLVG 439 (465)
Q Consensus 361 L~~~I~~sI~~~~~~dl~~r~~l~~NIvLtGG~S~ipGl~eRL~~EL~~l~p~~-~~~~v~v~~~~~~~~~aW~Ggsila 439 (465)
+.+.|.+.+...-+ +. ++ .-|+|+|-.+.+|-|-.-+...|+..+... ....++....-...-.+=.||+++|
T Consensus 257 l~e~vvK~v~tllp-s~--~p---d~iylSGrf~~~~~~~~dv~~~l~d~~s~~g~~~evr~le~~~K~KeaA~GaAiiA 330 (374)
T COG2441 257 LIEGVVKDVFTLLP-ST--YP---DAIYLSGRFSRIPRFFSDVKEKLRDAFSSYGFGIEVRKLESRAKAKEAAEGAAIIA 330 (374)
T ss_pred HHHHHHHHHHHhcc-cc--Cc---ceEEEeeecccccchhhHHHHHHHHHHhhcCccceeehhhhhhhhhhhccchhhhh
Confidence 45556666665544 33 12 239999999999988777777776554332 1112333332222334557999988
Q ss_pred c
Q 012375 440 N 440 (465)
Q Consensus 440 s 440 (465)
+
T Consensus 331 n 331 (374)
T COG2441 331 N 331 (374)
T ss_pred h
Confidence 7
No 91
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=76.52 E-value=1.1 Score=48.57 Aligned_cols=48 Identities=15% Similarity=0.501 Sum_probs=43.8
Q ss_pred cccCCcHHHHHHHHhccChHhhHhhhccchhhhhhccChHHHHHHHhh
Q 012375 37 AFDQIPWDVLIQIVKLIGPKEAAKLCVVSKSWRALVSDNRLWIFFLQH 84 (465)
Q Consensus 37 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 84 (465)
.+.-||.+...+|+++|.+++++++..+|++|+.+..|+..|..-+..
T Consensus 107 fi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~~~~ 154 (537)
T KOG0274|consen 107 FLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRMCRE 154 (537)
T ss_pred hhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhhhhh
Confidence 477899999999999999999999999999999999999999855443
No 92
>PF13013 F-box-like_2: F-box-like domain
Probab=73.65 E-value=5.4 Score=33.81 Aligned_cols=36 Identities=14% Similarity=0.182 Sum_probs=29.9
Q ss_pred cccCCcHHHHHHHHhccChHhhHhhhccch--hhhhhc
Q 012375 37 AFDQIPWDVLIQIVKLIGPKEAAKLCVVSK--SWRALV 72 (465)
Q Consensus 37 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~ 72 (465)
.+..||.|++..|...-.+.++..+.-+|+ +|+.-+
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~~~r~~r~~ 58 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCRAYRSWRDH 58 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHH
Confidence 566699999999999999999988888887 555444
No 93
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=73.55 E-value=20 Score=34.41 Aligned_cols=52 Identities=10% Similarity=0.021 Sum_probs=37.4
Q ss_pred CCCceEEEeecCceeEEEEEeeCeeeccccEEEEeccHHHHHHHHHHHHHhcCC
Q 012375 240 KRTSGIVVNIGFQVTSVVPILHGKVMRKVGVEVMGLGALKLTGYLRLLMQQNNI 293 (465)
Q Consensus 240 g~~tglVVDiG~~~T~v~PV~dG~vl~~~~~~~~~iGG~~lt~~L~~lL~~~~~ 293 (465)
|..+.+|+-+..+.|+|+...+.+---- -++++++=-.+-..+.+.|+..+.
T Consensus 122 gA~nPvvLYvSGGNTQvIAYse~rYrIF--GETlDIAvGNClDRFAR~lklsN~ 173 (336)
T KOG2708|consen 122 GAQNPVVLYVSGGNTQVIAYSEKRYRIF--GETLDIAVGNCLDRFARVLKLSND 173 (336)
T ss_pred cCCCCEEEEEeCCceEEEEEccceeeee--cceehhhhhhhHHHHHHHhcCCCC
Confidence 5678899999999999999999875221 266787755555566666665543
No 94
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=72.51 E-value=53 Score=33.59 Aligned_cols=51 Identities=27% Similarity=0.460 Sum_probs=36.1
Q ss_pred ceEEecCCCCccchHHHHHHHHHhcCCCCCCCceEEeCCC-CCcchhhhhhHHhhc
Q 012375 386 TVILTGGSACLPGLAERLEKELRGLLPSSISNGIRVIPPP-YGADTAWFGAKLVGN 440 (465)
Q Consensus 386 NIvLtGG~S~ipGl~eRL~~EL~~l~p~~~~~~v~v~~~~-~~~~~aW~Ggsilas 440 (465)
-|+|+|-.+.++.|.+-+...|....+.. +.-..+. ...-.+=.|++++|+
T Consensus 263 ~IilSGr~~~~~~~~~~l~~~l~~~~~~~----v~~l~~~~~~aKeaA~GaAiIA~ 314 (343)
T PF07318_consen 263 EIILSGRFSRIPEFRKKLEDRLEDYFPVK----VRKLEGLARKAKEAAQGAAIIAN 314 (343)
T ss_pred EEEEeccccccHHHHHHHHHHHHhhcccc----eeecccccccchhhhhhHHHHhh
Confidence 39999999999999999999998877621 1111111 112346689999997
No 95
>PRK13324 pantothenate kinase; Reviewed
Probab=71.37 E-value=96 Score=30.43 Aligned_cols=17 Identities=18% Similarity=0.247 Sum_probs=15.0
Q ss_pred EEEeCCcceEEEEEecC
Q 012375 128 VIIDGGSGYCKFGWSKY 144 (465)
Q Consensus 128 VVID~GS~~~K~Gfage 144 (465)
+.||+|--++|.|+..+
T Consensus 3 L~iDiGNT~ik~gl~~~ 19 (258)
T PRK13324 3 LVMDMGNSHIHIGVFDG 19 (258)
T ss_pred EEEEeCCCceEEEEEEC
Confidence 78999999999998754
No 96
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=68.27 E-value=54 Score=30.73 Aligned_cols=18 Identities=28% Similarity=0.322 Sum_probs=15.2
Q ss_pred EEEeCCcceEEEEEecCC
Q 012375 128 VIIDGGSGYCKFGWSKYD 145 (465)
Q Consensus 128 VVID~GS~~~K~Gfage~ 145 (465)
++||+|--.+|+|+-.++
T Consensus 2 L~iDiGNT~ik~~~~~~~ 19 (206)
T PF03309_consen 2 LLIDIGNTRIKWALFDGD 19 (206)
T ss_dssp EEEEE-SSEEEEEEEETT
T ss_pred EEEEECCCeEEEEEEECC
Confidence 789999999999999665
No 97
>PRK13318 pantothenate kinase; Reviewed
Probab=66.13 E-value=58 Score=31.67 Aligned_cols=17 Identities=29% Similarity=0.343 Sum_probs=15.3
Q ss_pred EEEeCCcceEEEEEecC
Q 012375 128 VIIDGGSGYCKFGWSKY 144 (465)
Q Consensus 128 VVID~GS~~~K~Gfage 144 (465)
+.||+|.-.+|+|+..+
T Consensus 3 L~IDIGnT~iK~al~d~ 19 (258)
T PRK13318 3 LAIDVGNTNTVFGLYEG 19 (258)
T ss_pred EEEEECCCcEEEEEEEC
Confidence 78999999999999864
No 98
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=63.87 E-value=54 Score=31.79 Aligned_cols=18 Identities=22% Similarity=0.331 Sum_probs=15.5
Q ss_pred EEEeCCcceEEEEEecCC
Q 012375 128 VIIDGGSGYCKFGWSKYD 145 (465)
Q Consensus 128 VVID~GS~~~K~Gfage~ 145 (465)
++||+|--++|+|+..++
T Consensus 2 L~iDiGNT~i~~g~~~~~ 19 (243)
T TIGR00671 2 LLIDVGNTRIVFALNSGN 19 (243)
T ss_pred EEEEECCCcEEEEEEECC
Confidence 689999999999987654
No 99
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=60.56 E-value=53 Score=32.13 Aligned_cols=19 Identities=21% Similarity=0.177 Sum_probs=16.5
Q ss_pred EEEeCCcceEEEEEecCCC
Q 012375 128 VIIDGGSGYCKFGWSKYDC 146 (465)
Q Consensus 128 VVID~GS~~~K~Gfage~~ 146 (465)
++||+|-..++.|+-.+..
T Consensus 3 L~iDiGNT~~~~a~~~~~~ 21 (251)
T COG1521 3 LLIDIGNTRIVFALYEGGK 21 (251)
T ss_pred EEEEeCCCeEEEEEecCCe
Confidence 7899999999999987543
No 100
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=59.99 E-value=36 Score=33.28 Aligned_cols=44 Identities=25% Similarity=0.290 Sum_probs=35.9
Q ss_pred ccCCeEEEeecchHHHHhcC-------CCceEEEeecCceeEEEEEeeCeee
Q 012375 221 LNVPAVCAINQATLALYAAK-------RTSGIVVNIGFQVTSVVPILHGKVM 265 (465)
Q Consensus 221 ~~vpav~~~~~~vlalya~g-------~~tglVVDiG~~~T~v~PV~dG~vl 265 (465)
.+... .+.++..+|.+|+- ....+|||+|-+.|-..-|.+|++.
T Consensus 140 ~~~~~-~vmDTg~AAvlGal~d~~v~~~~~~~~vniGN~HTlaa~v~~~rI~ 190 (254)
T PF08735_consen 140 AGYDE-VVMDTGPAAVLGALCDPEVSSREGIIVVNIGNGHTLAALVKDGRIY 190 (254)
T ss_pred CCCCc-eEecCHHHHHhhhhcChhhhccCCeEEEEeCCccEEEEEEeCCEEE
Confidence 44444 88888888888873 4678999999999999999998874
No 101
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=56.11 E-value=18 Score=38.41 Aligned_cols=81 Identities=16% Similarity=0.123 Sum_probs=50.3
Q ss_pred CCCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhh-c------cCCeEEEeecchHHHH-----hcCC------CceEE
Q 012375 185 TQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-L------NVPAVCAINQATLALY-----AAKR------TSGIV 246 (465)
Q Consensus 185 ~~pVll~ep~~~~~~~~~~~~~R~~~~e~l~e~lFE-~------~vpav~~~~~~vlaly-----a~g~------~tglV 246 (465)
+.++.++++..-..+..++...|+.+++.+.+.+-+ = ....--+.+.|-+.+- +-+. ..-++
T Consensus 174 ~~~~~i~eNV~P~i~~ln~epaR~~I~~vF~~~Iv~akGl~~i~~~~~~~i~PTP~AV~~a~~~la~~~~~~~g~g~ll~ 253 (463)
T TIGR01319 174 DIFYRITDNVLPDLDHLNPEAAREAICDIFLKKIVEAKGLDNAEDFIGEELMPTPAAVFEAAKAIAEGTDKDDGIGDFIL 253 (463)
T ss_pred CceEEecCCcCCCCCCcCchHHHHHHHHHHHHHHhcCCCHHHHHHHhCCcccCCHHHHHHHHHHHHhccccccCcCCEEE
Confidence 445667765554445666777788887776665432 1 1222334444433332 3332 34699
Q ss_pred EeecCceeEEEEEeeCeee
Q 012375 247 VNIGFQVTSVVPILHGKVM 265 (465)
Q Consensus 247 VDiG~~~T~v~PV~dG~vl 265 (465)
||||+.+|+|-.+.+|.+-
T Consensus 254 VDIGGATTDvhSv~~g~~~ 272 (463)
T TIGR01319 254 IDIGGATTDVHSAAAGELS 272 (463)
T ss_pred EEcCccccchhhccCCCcc
Confidence 9999999999999999664
No 102
>PF13941 MutL: MutL protein
Probab=55.39 E-value=23 Score=37.73 Aligned_cols=84 Identities=17% Similarity=0.195 Sum_probs=55.4
Q ss_pred CCCCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhh-cc------CCeEEEeecchHHH-----Hhc-CCCceEEEeec
Q 012375 184 STQPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFD-LN------VPAVCAINQATLAL-----YAA-KRTSGIVVNIG 250 (465)
Q Consensus 184 ~~~pVll~ep~~~~~~~~~~~~~R~~~~e~l~e~lFE-~~------vpav~~~~~~vlal-----ya~-g~~tglVVDiG 250 (465)
...+++++++..-..+..+....|+.+++++.+..-+ =| .-.--+++.|-+.+ ++- +...-+|||||
T Consensus 177 ~~~~~~~~~NV~P~i~~ln~~paR~~I~~~F~~~Ii~akGl~~~~~~~~~~i~PTP~AVl~~~~lla~~~~g~llvVDIG 256 (457)
T PF13941_consen 177 AGKEVVITENVMPKIDVLNVEPAREAIREVFLRHIIQAKGLSKLREMVDGPIMPTPAAVLRAAELLAEGGIGDLLVVDIG 256 (457)
T ss_pred CCCCEEEeCCCCCCCCCcChHHHHHHHHHHHHHHHhcCCCHHHHHHHhCCcccCCHHHHHHHHHHHHhcccCCEEEEEcc
Confidence 3567888876654445677777788888777666543 11 12233455554433 333 56778999999
Q ss_pred CceeEEEEEeeCeeecc
Q 012375 251 FQVTSVVPILHGKVMRK 267 (465)
Q Consensus 251 ~~~T~v~PV~dG~vl~~ 267 (465)
..+|+|--|.+|.+-..
T Consensus 257 GATTDVhSv~~~~~~~~ 273 (457)
T PF13941_consen 257 GATTDVHSVAEGSPEIP 273 (457)
T ss_pred CcccchhhhccCCcccc
Confidence 99999999997766443
No 103
>PRK13320 pantothenate kinase; Reviewed
Probab=52.28 E-value=1.7e+02 Score=28.35 Aligned_cols=19 Identities=26% Similarity=0.286 Sum_probs=16.3
Q ss_pred cEEEeCCcceEEEEEecCC
Q 012375 127 SVIIDGGSGYCKFGWSKYD 145 (465)
Q Consensus 127 ~VVID~GS~~~K~Gfage~ 145 (465)
-+.||+|--++|.|+..++
T Consensus 4 ~L~iDiGNT~ik~~~~~~~ 22 (244)
T PRK13320 4 NLVIDIGNTTTKLAVFEGD 22 (244)
T ss_pred EEEEEeCCCcEEEEEEECC
Confidence 4899999999999988653
No 104
>PRK09557 fructokinase; Reviewed
Probab=51.11 E-value=36 Score=33.75 Aligned_cols=67 Identities=18% Similarity=0.200 Sum_probs=42.7
Q ss_pred HHHHHHHHHhhcCCCCccccccccCceEEecCCCCccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHh
Q 012375 361 LDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLV 438 (465)
Q Consensus 361 L~~~I~~sI~~~~~~dl~~r~~l~~NIvLtGG~S~ipGl~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsil 438 (465)
|..++.+.+.-+++ + .|||.||.+..+-+.+.|++.+++....... +++|..+.....+.-+||..+
T Consensus 232 La~~l~~l~~~ldP-~---------~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~-~~~i~~s~~~~~a~~~GAa~~ 298 (301)
T PRK09557 232 LAKSLAHVINILDP-D---------VIVLGGGMSNVDRLYPTLPALLKQYVFGGEC-ETPVRKALHGDSSGVRGAAWL 298 (301)
T ss_pred HHHHHHHHHHHhCC-C---------EEEEcCcccchHHHHHHHHHHHHHHhccccc-CCeEEEcccCCchhhhhhhHh
Confidence 55556666655554 2 3788888887777888888888765433222 356655554456667787765
No 105
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=49.41 E-value=43 Score=33.21 Aligned_cols=68 Identities=21% Similarity=0.191 Sum_probs=42.8
Q ss_pred HHHHHHHHHhhcCCCCccccccccCceEEecCCCCccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhh
Q 012375 361 LDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVG 439 (465)
Q Consensus 361 L~~~I~~sI~~~~~~dl~~r~~l~~NIvLtGG~S~ipGl~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsila 439 (465)
|...|.+.+.-+++ + .|||.||.+..+-|.+++++.+.+....... .+.+..+.....+.-+||..++
T Consensus 233 la~~l~n~~~~ldP-~---------~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~-~~~i~~s~~~~~a~~~GAa~~~ 300 (303)
T PRK13310 233 LAICLGNILTIVDP-H---------LVVLGGGLSNFDAIYEQLPKRLPRHLLPVAR-VPRIEKARHGDAGGVRGAAFLH 300 (303)
T ss_pred HHHHHHHHHHHcCC-C---------EEEECCcccChHHHHHHHHHHHHHHhccccc-CceEEEcccCchHHHHhHHHHh
Confidence 55556666655655 3 3778777776677888888888764322211 3555555555567777988765
No 106
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=41.47 E-value=64 Score=31.71 Aligned_cols=66 Identities=20% Similarity=0.277 Sum_probs=42.5
Q ss_pred HHHHHHHHHhhcCCCCccccccccCceEEecCCCCccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhh
Q 012375 361 LDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVG 439 (465)
Q Consensus 361 L~~~I~~sI~~~~~~dl~~r~~l~~NIvLtGG~S~ipGl~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsila 439 (465)
|..++.+.+.-+++ | .|||.|+.+..+-|.+++++.++.. +... .+.+..+.....++-+||+.++
T Consensus 221 la~~l~~l~~~~dp-e---------~IvlgG~~~~~~~~~~~i~~~l~~~-~~~~--~~~i~~s~~~~~~~~~GAa~~~ 286 (291)
T PRK05082 221 IARLIADLKATLDC-Q---------CVVLGGSVGLAEGYLELVQAYLAQE-PAIY--HVPLLAAHYRHDAGLLGAALWA 286 (291)
T ss_pred HHHHHHHHHHHhCC-C---------EEEEcCccccHHHHHHHHHHHHHhc-cccc--CCeEEECccCCchhhhhHHHHh
Confidence 55566666666655 3 3788787777777788888888764 2211 2555555555667778988765
No 107
>PRK13326 pantothenate kinase; Reviewed
Probab=41.39 E-value=2.7e+02 Score=27.30 Aligned_cols=19 Identities=32% Similarity=0.373 Sum_probs=16.8
Q ss_pred cEEEeCCcceEEEEEecCC
Q 012375 127 SVIIDGGSGYCKFGWSKYD 145 (465)
Q Consensus 127 ~VVID~GS~~~K~Gfage~ 145 (465)
-++||+|--++|+|+..++
T Consensus 8 ~L~IDiGNT~ik~glf~~~ 26 (262)
T PRK13326 8 QLIIDIGNTSISFALYKDN 26 (262)
T ss_pred EEEEEeCCCeEEEEEEECC
Confidence 4899999999999998765
No 108
>PRK09698 D-allose kinase; Provisional
Probab=41.11 E-value=73 Score=31.47 Aligned_cols=70 Identities=21% Similarity=0.257 Sum_probs=43.1
Q ss_pred HHHHHHHHHhhcCCCCccccccccCceEEecCCCCccc-hHHHHHHHHHhcCC-CCCCCceEEeCCCCCcchhhhhhHHh
Q 012375 361 LDQAVALCMDHCHYAELSGDDAWFKTVILTGGSACLPG-LAERLEKELRGLLP-SSISNGIRVIPPPYGADTAWFGAKLV 438 (465)
Q Consensus 361 L~~~I~~sI~~~~~~dl~~r~~l~~NIvLtGG~S~ipG-l~eRL~~EL~~l~p-~~~~~~v~v~~~~~~~~~aW~Ggsil 438 (465)
|...+.+.+.-.++ + -|||.||.+.... +.++|.+++++... ......+++..+.....+.-+||..+
T Consensus 224 la~~l~~li~~ldP-~---------~IvlgG~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~a~~~GAa~~ 293 (302)
T PRK09698 224 LARAIATSINLFDP-D---------AIILGGGVMDMPAFPRETLIAMIQKYLRKPLPYEVVRFIYASSSDFNGAQGAAIL 293 (302)
T ss_pred HHHHHHHHHHHhCC-C---------EEEEcCccccCchhHHHHHHHHHHHHccCccccCCcEEEECCcCCcccHHhHHHH
Confidence 55566666655555 3 3677777766544 57888888877653 21122355655554556677898876
Q ss_pred hc
Q 012375 439 GN 440 (465)
Q Consensus 439 as 440 (465)
+-
T Consensus 294 ~~ 295 (302)
T PRK09698 294 AH 295 (302)
T ss_pred HH
Confidence 53
No 109
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=40.24 E-value=24 Score=28.87 Aligned_cols=26 Identities=19% Similarity=0.462 Sum_probs=23.5
Q ss_pred ccccCCcHHHHHHHHhccChHhhHhh
Q 012375 36 GAFDQIPWDVLIQIVKLIGPKEAAKL 61 (465)
Q Consensus 36 ~~~~~~~~~~~~~i~~~~~~~~~~~~ 61 (465)
.-+..||.++...|++.|+..|+..+
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~~l 95 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLKKL 95 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHHHH
Confidence 46889999999999999999999765
No 110
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=40.03 E-value=41 Score=37.69 Aligned_cols=45 Identities=22% Similarity=0.287 Sum_probs=31.4
Q ss_pred cCCeEEEeecchH----HHHhcCCCc--eEEEeecCceeEEEEEeeCeeec
Q 012375 222 NVPAVCAINQATL----ALYAAKRTS--GIVVNIGFQVTSVVPILHGKVMR 266 (465)
Q Consensus 222 ~vpav~~~~~~vl----alya~g~~t--glVVDiG~~~T~v~PV~dG~vl~ 266 (465)
+.|.-.+..-|.+ |+|-+|..+ ++++|+|..+|++.-|.+|.+-.
T Consensus 252 ~~pv~tI~SGPAagvvGAa~ltg~~~g~~i~~DmGGTStDva~i~~G~pe~ 302 (674)
T COG0145 252 EKPVETILSGPAAGVVGAAYLTGLKAGNAIVFDMGGTSTDVALIIDGEPEI 302 (674)
T ss_pred cCCeeeEeeccHHHHHHHHHhcccccCCEEEEEcCCcceeeeeeecCcEEe
Confidence 3455445554544 444446666 89999999999999998777643
No 111
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=38.97 E-value=21 Score=36.83 Aligned_cols=26 Identities=42% Similarity=0.544 Sum_probs=20.6
Q ss_pred cCceEEecCCCCccchHHHHHHHHHh
Q 012375 384 FKTVILTGGSACLPGLAERLEKELRG 409 (465)
Q Consensus 384 ~~NIvLtGG~S~ipGl~eRL~~EL~~ 409 (465)
...|++|||++.-+-|.+||++.+..
T Consensus 285 ~~~v~v~GGGa~N~~L~~~L~~~l~~ 310 (364)
T PF03702_consen 285 PDEVYVCGGGARNPFLMERLQERLPG 310 (364)
T ss_dssp -EEEEEESGGGG-HHHHHHHHHH-TT
T ss_pred CceEEEECCCcCCHHHHHHHHhhCCC
Confidence 35799999999999999999998853
No 112
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=33.62 E-value=34 Score=31.32 Aligned_cols=47 Identities=19% Similarity=0.203 Sum_probs=33.8
Q ss_pred ccCceEEecCCCCccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhc
Q 012375 383 WFKTVILTGGSACLPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGN 440 (465)
Q Consensus 383 l~~NIvLtGG~S~ipGl~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilas 440 (465)
-.+.|+++||.++-+-+.+.+..=+.. +|.+... ...+=+|++++|.
T Consensus 149 ~~~~i~~~GG~~~n~~~~q~~Advl~~--------~V~~~~~---~e~~a~GaA~~A~ 195 (198)
T PF02782_consen 149 PIRRIRVSGGGAKNPLWMQILADVLGR--------PVVRPEV---EEASALGAALLAA 195 (198)
T ss_dssp CESEEEEESGGGGSHHHHHHHHHHHTS--------EEEEESS---STHHHHHHHHHHH
T ss_pred cceeeEeccccccChHHHHHHHHHhCC--------ceEeCCC---CchHHHHHHHHHH
Confidence 357799999999988888887766651 2444433 3466689998874
No 113
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=28.11 E-value=28 Score=37.53 Aligned_cols=99 Identities=18% Similarity=0.078 Sum_probs=60.8
Q ss_pred HHHhccChHhhHhhhccchhhhhhccChHHHHHHHhhc-----CCC---CCcceeeccccc---------------CCCC
Q 012375 48 QIVKLIGPKEAAKLCVVSKSWRALVSDNRLWIFFLQHQ-----QEP---WDSIFFGETTLG---------------SGYP 104 (465)
Q Consensus 48 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~-----~~~---~~~~~~~~~~~~---------------~~~~ 104 (465)
+++|++.+.+++|.+.+|.|+|+||+.=.|=.+.|-.- .++ =+-|++-|.--- .|.|
T Consensus 67 ~vgnd~~~~~~~Rs~~rSPFd~nVvtNwel~E~ilDY~F~~LG~~~~~idhPIilTE~laNP~~~R~~m~elLFE~YgvP 146 (645)
T KOG0681|consen 67 LVGNDILNFQGVRSSPRSPFDRNVVTNWELMEQILDYIFGKLGVDGQGIDHPIILTEALANPVYSRSEMVELLFETYGVP 146 (645)
T ss_pred cccchhhhhhhhhccCCCCCcCCccccHHHHHHHHHHHHHhcCCCccCCCCCeeeehhccChHHHHHHHHHHHHHHcCCc
Confidence 78999999999999999999999999877766655321 111 233444443110 1222
Q ss_pred ccccC--CCCCccccccCCCCCCccEEEeCCcceEEEEEecCCCC
Q 012375 105 YQTLA--TGLSFMHIYGQRAQVPGSVIIDGGSGYCKFGWSKYDCP 147 (465)
Q Consensus 105 ~~~~~--~~~s~~~~y~~~~~~~~~VVID~GS~~~K~Gfage~~P 147 (465)
--+|. -=.||++-|+... ++..+||+.|-..|-+=.--|..|
T Consensus 147 ~V~yGIDslfS~~hN~~~~~-~~~~liis~g~~~T~vipvldG~~ 190 (645)
T KOG0681|consen 147 KVAYGIDSLFSFYHNYGKSS-NKSGLIISMGHSATHVIPVLDGRL 190 (645)
T ss_pred ceeechhhHHHHhhccCccc-CcceEEEecCCCcceeEEEecCch
Confidence 22321 1234444444333 347899999988776655544443
No 114
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=27.46 E-value=4.1e+02 Score=26.75 Aligned_cols=94 Identities=15% Similarity=0.092 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHhhcccCCCC--CCeEEEecCCCCCCccchHHhHHHHHHHHHHHHhhccCCeEEEeecchHHHHhc--C
Q 012375 165 YSRLRHFFATIYSRMQVKPST--QPIVVSIPICHYDDTENAKASRRQLKDCFQQVLFDLNVPAVCAINQATLALYAA--K 240 (465)
Q Consensus 165 ~~~l~~~~~~~~~~L~v~~~~--~pVll~ep~~~~~~~~~~~~~R~~~~e~l~e~lFE~~vpav~~~~~~vlalya~--g 240 (465)
-++++.+.+..+.+-++++++ +.|.+...-.. .+...| ++.+ -+.-.|-.-+..+++..++..++++. |
T Consensus 46 ~~rie~~i~~A~~k~g~d~~~~lr~lgL~lSg~d-----~e~~~~-~lv~-~~R~~fps~ae~~~v~sDa~~sl~a~t~g 118 (336)
T KOG1794|consen 46 ASRIEDMIREAKEKAGWDKKGPLRSLGLGLSGTD-----QEDKNR-KLVT-EFRDKFPSVAENFYVTSDADGSLAAATPG 118 (336)
T ss_pred HHHHHHHHHHHHhhcCCCccCccceeeeecccCC-----chhHHH-HHHH-HHHHhccchhheeeeehhHHHHHhhcCCC
Confidence 456777777777777777665 55666655432 233333 2222 22222223355688999999999887 5
Q ss_pred CCceEEEeecCceeEEEEEeeCeee
Q 012375 241 RTSGIVVNIGFQVTSVVPILHGKVM 265 (465)
Q Consensus 241 ~~tglVVDiG~~~T~v~PV~dG~vl 265 (465)
...|+|+=.|.++..-.-.-||..-
T Consensus 119 ~~~GiVLiaGTgs~crl~~~DGs~~ 143 (336)
T KOG1794|consen 119 GEGGIVLIAGTGSNCRLVNPDGSEK 143 (336)
T ss_pred CCCcEEEEecCCceeEEECCCCCcc
Confidence 5899999999888777666677653
No 115
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=26.64 E-value=67 Score=33.23 Aligned_cols=24 Identities=38% Similarity=0.544 Sum_probs=21.4
Q ss_pred CceEEecCCCCccchHHHHHHHHH
Q 012375 385 KTVILTGGSACLPGLAERLEKELR 408 (465)
Q Consensus 385 ~NIvLtGG~S~ipGl~eRL~~EL~ 408 (465)
+.|++|||++.-|-|.+||++++.
T Consensus 288 ~~vlv~GGGa~N~~Lm~~L~~~l~ 311 (365)
T PRK09585 288 DELLVCGGGARNPTLMERLAALLP 311 (365)
T ss_pred CEEEEECCCcchHHHHHHHHHhcC
Confidence 358999999999999999999883
No 116
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=25.33 E-value=93 Score=31.94 Aligned_cols=50 Identities=22% Similarity=0.281 Sum_probs=35.4
Q ss_pred cCceEEecCCCCccchHHHHHHHHHhcCCCCCCCceEEeCCC------CCcchhhhhhHHhhc
Q 012375 384 FKTVILTGGSACLPGLAERLEKELRGLLPSSISNGIRVIPPP------YGADTAWFGAKLVGN 440 (465)
Q Consensus 384 ~~NIvLtGG~S~ipGl~eRL~~EL~~l~p~~~~~~v~v~~~~------~~~~~aW~Ggsilas 440 (465)
.++|+++||.+.-.-|+++|++.+.+. +++++.++ +...-+|.|...+.+
T Consensus 264 ~~~lvv~GGVAaN~~LR~~l~~~~~~~-------~~~~~~p~~~~ctDNaaMIa~~g~~~~~~ 319 (345)
T PTZ00340 264 SNEVLIVGGVGCNLRLQEMMQQMAKER-------GGKLFAMDERYCIDNGAMIAYAGLLEYLS 319 (345)
T ss_pred CCeEEEcCCHHHHHHHHHHHHHHHHHc-------CCEEEeCChHhhhhhHHHHHHHHHHHHHc
Confidence 367999999999888888888766531 25665544 234668888776654
No 117
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=23.13 E-value=39 Score=35.46 Aligned_cols=43 Identities=16% Similarity=0.481 Sum_probs=39.0
Q ss_pred cCCcHHHHHHHHhccChHhhHhhhccchhhhhhccChHHHHHH
Q 012375 39 DQIPWDVLIQIVKLIGPKEAAKLCVVSKSWRALVSDNRLWIFF 81 (465)
Q Consensus 39 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 81 (465)
..||.++.+.|-++|-.+-++|-...|++|+-.|-|-.=|-+.
T Consensus 73 ~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~i 115 (483)
T KOG4341|consen 73 RSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHI 115 (483)
T ss_pred ccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceee
Confidence 5799999999999999999999999999999999887766554
No 118
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=20.80 E-value=17 Score=36.77 Aligned_cols=50 Identities=18% Similarity=0.228 Sum_probs=46.4
Q ss_pred cccCCcHHHHHHHHhccChHhhHhhhccchhhhhhccChHHHHHHHhhcC
Q 012375 37 AFDQIPWDVLIQIVKLIGPKEAAKLCVVSKSWRALVSDNRLWIFFLQHQQ 86 (465)
Q Consensus 37 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 86 (465)
.++-+|-+++..+++++.+.++.+-+.+++--..+.+-..||+.++-.+.
T Consensus 7 ~le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s~~~lw~r~c~k~l 56 (386)
T KOG4408|consen 7 GLEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSHLPLWNRPCKKYL 56 (386)
T ss_pred chhhcccccceeeecccchhhhhcceeechHHhhhhhccccccccccccc
Confidence 46788999999999999999999999999999999999999999987766
No 119
>PF03727 Hexokinase_2: Hexokinase; InterPro: IPR022673 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF00349 from PFAM. Some members of the family have two copies of each of these domains. This entry represents the more C-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4DHY_A 3ID8_A 4DCH_A 3FGU_A 3QIC_A 3A0I_X 3VEY_A 3IDH_A 3VEV_A 3VF6_A ....
Probab=20.24 E-value=1.2e+02 Score=29.39 Aligned_cols=51 Identities=25% Similarity=0.408 Sum_probs=35.4
Q ss_pred eEEecCC-CCccchHHHHHHHHHhcCCCCCCCceEEeCCCCCcchhhhhhHHhhcC
Q 012375 387 VILTGGS-ACLPGLAERLEKELRGLLPSSISNGIRVIPPPYGADTAWFGAKLVGNL 441 (465)
Q Consensus 387 IvLtGG~-S~ipGl~eRL~~EL~~l~p~~~~~~v~v~~~~~~~~~aW~Ggsilasl 441 (465)
|-+-|+. -+.|+|.+++++-|+.+++... .+|++.... .++=+||+|+|.+
T Consensus 189 VavDGSv~~~~p~f~~~l~~~l~~L~~~~~-~~v~~~~~~---dgsg~GAAi~AA~ 240 (243)
T PF03727_consen 189 VAVDGSVYEKYPNFRERLQEALDELLPEEG-CKVEFVLSE---DGSGVGAAIAAAV 240 (243)
T ss_dssp EEEESHHHHHSTTHHHHHHHHHHHHSTT-C-EEEEEEE-S---STHHHHHHHHHHH
T ss_pred EEEeCcceeeCHHHHHHHHHHHHHhccccc-ceEEEEEec---CchHHHHHHHHHH
Confidence 3344432 3689999999999999998752 247766554 4678999998753
Done!