BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012376
(465 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q56Y52|POT1A_ARATH Protection of telomeres protein 1a OS=Arabidopsis thaliana GN=POT1A
PE=1 SV=1
Length = 467
Score = 233 bits (593), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 159/482 (32%), Positives = 253/482 (52%), Gaps = 35/482 (7%)
Query: 1 MSSQRNQGGIVRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPEL 60
M+ +R +++IK+ + +V+L+G+VLE P++ + D++C L+I+DD+ SP L
Sbjct: 1 MAKKRESPKLIKIKDAIKLINQQVSLIGIVLEQREPKQCRNNDWICTLRIIDDTYPSPGL 60
Query: 61 LVNIFTSSIDQLPRVLSPRDLILLKNVMIKKHQA--ELSAVFYKDSSSFALFDGNSGSNL 118
VN+F+ +++QLP++ + D+IL + ++ + ++A + SSFALF+G +
Sbjct: 61 TVNVFSKTLEQLPQIKNHDDMILFTRIKMQTFDSGERVNAACSRWVSSFALFEG---VDF 117
Query: 119 LPYQSSPQRFEITEAEERRINVLRQWCVG----------FEFSSGSNDYLLS-LKDISEH 167
+ YQ S E + ++ LR+ G + + + S L++I
Sbjct: 118 VCYQCSTNFHEEEALYKSAMDDLRKVFAGCSQVIKAMQSISYRTKPCSEVFSFLREIKIG 177
Query: 168 RYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKL--EDEEHNPLPLHIESSPLD 225
+ FDLVC++ H D S +FVWDGTD PP SI K ED+ + L +H + L
Sbjct: 178 KRFDLVCRILHADEDTS----AVFVWDGTDAPPASILAKRSEEDKAFSSLSVH---TLLS 230
Query: 226 LETLRNFFPVGTVLRVSTDRSYENFGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKI 285
+ L +F VGT+LRV S F Y G WV++ ++ C+V G W + SS+K+
Sbjct: 231 RDVLLSFPTVGTILRVHL--SSHLF--YRVKPGDWVKLYHLLCEVDRGSWVIKVTSSTKV 286
Query: 286 RLFSDNDNVVWDYMRRFRERISGGHGHMPIWTDPSSQFLTEVDWVNVASVTLMKIATQLQ 345
+ +D +V MR + +R+S GH+ W PS LTE D VTLM I T +
Sbjct: 287 HHLAQDDRLVEKIMRIYDKRLSSKLGHISFWCFPSPPGLTETDDNCAPFVTLMDIITFPK 346
Query: 346 GNVRCCCIVRVVSIHPFQAEHYSSPNGSSEYTMKLTLEDPTARIHALLCGKEWVKFFG-G 404
+ CIVRVV+ +P+Q E + S + + LTLED TA + A LC K+ F+G G
Sbjct: 347 VTCKYRCIVRVVAAYPWQVEDFCSDENRRHHQVLLTLEDSTATLEAFLCNKDAEYFWGLG 406
Query: 405 SPPPDVLTKKIKMLLGMPEHEDGNDDMVRNPPWIKCFL---HLKESDGGRNRVYYIRWTK 461
+ L KK LLG+ E N RNPPWI+C + + ++D R+Y I T+
Sbjct: 407 FQDTETLRKKRNWLLGI--RESSNFVAPRNPPWIECCILSYYTNKADPWNTRLYRIFGTR 464
Query: 462 LV 463
L+
Sbjct: 465 LL 466
>sp|Q6NKX5|POT1B_ARATH Protection of telomeres protein 1b OS=Arabidopsis thaliana GN=POT1B
PE=1 SV=1
Length = 454
Score = 206 bits (523), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 151/443 (34%), Positives = 223/443 (50%), Gaps = 23/443 (5%)
Query: 4 QRNQGGIVRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVN 63
+R+ +RI++ + VNL+GV++E S G+D C LKIVD L V
Sbjct: 5 RRDDYKFLRIQDAFKALHLHVNLIGVIVELGF---SNGSDCSCTLKIVDPWYSGSGLPVK 61
Query: 64 IFTSSIDQLPRVLSPRDLILLKNVMIKKHQAELSAVFYKD-SSSFALFDGNSGSNLLPYQ 122
+I LPRV S D+ILL V I +++A+ + SSSFALF+G + +PYQ
Sbjct: 62 FVARTIRDLPRVESIGDIILLSRVKIVLINRKITALCNETTSSSFALFNGKHSVDSIPYQ 121
Query: 123 SSPQRFEITEAEERRINVLRQWCVGFEFSSGSNDYLLSLKDISEHRYFDLVCKVFHVS-- 180
SSP +F + E ++ ++ LR+W + ++F GS + SLKDI E +L C++ H+S
Sbjct: 122 SSP-KFLMREQDKNFLSNLREWMITYKFEDGSCCFT-SLKDIKEGECSNLSCQIVHISKV 179
Query: 181 YDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPVGTVLR 240
Y D W LFVWDGT++PP +I K E LPL +E L LR F G+VLR
Sbjct: 180 YKDR---WYLFVWDGTEMPPCNILVKSER-----LPLCVEPEMLPTYMLRKFPTFGSVLR 231
Query: 241 VSTDRSYENFGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDNDNVVWDYMR 300
+ DR E + G+ V++ N+ QV+ G+W+ S+K++ + + R
Sbjct: 232 IIVDRVSEKQAIHCLQPGQHVKLLNLFFQVNMGLWNATFTPSTKMQYTMSREMEAFSPQR 291
Query: 301 RFRERISGGHGHMPIWTDPSSQFLTEVDWVNVASVTLMKIATQLQGNVRCCCIVRVVSIH 360
E+ S + S +T V + V+LM I T + C+VR + ++
Sbjct: 292 MCGEKFSPRWNPIARCISRSHSEITGVAHDDAPFVSLMDILTYHNVTAKFRCVVRFIQVY 351
Query: 361 PFQAEHYSSPNGSSEYTMKLTLEDPTARIHALLCGKEWVKFFG-GSPPPDVLTKKIKMLL 419
P NG+ + + LED TARIHA L E KFFG + L KK+ LL
Sbjct: 352 PRDVRKLRDINGNIK--LVAILEDATARIHASLYADEGEKFFGCDESDEEALVKKLNRLL 409
Query: 420 GMPEHEDGNDDMVRNPPWIKCFL 442
G E E + RNPPW++C L
Sbjct: 410 GGEEME----KVPRNPPWVQCCL 428
>sp|P62597|POTE1_CHICK Protection of telomeres protein 1 OS=Gallus gallus GN=POT1 PE=1
SV=1
Length = 778
Score = 83.6 bits (205), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 100/199 (50%), Gaps = 14/199 (7%)
Query: 24 VNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLIL 83
VNL G+V F P S+GTDY V+ +VD Q + +L +F ++D LP++ D++
Sbjct: 167 VNLYGIVKFFKPPYISKGTDYCSVVTLVD--QSNVKLTCTLFNGNLDSLPKIYKNGDIVR 224
Query: 84 LKNVMIKKHQAELSAVFYKDSSSFA--LFDGNSGSNLLPYQSSPQRFEITEAEERRINVL 141
V I+++ ++ + S+ FA FDG G+ ++P SS + + + E++ + L
Sbjct: 225 FHRVKIREYNGQMQGI---TSAGFASLTFDGTVGAPVVPRASS-KVYTFVDEEQKTVEEL 280
Query: 142 RQWCVGFEFSSGSNDYLLSLKDISEHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDV--P 199
R W SG L D+ +FDL C++ + D ++L VWDGT P
Sbjct: 281 RIWAASNLSVSGPE---AKLSDVKPMMFFDLTCQLVGKAKVDGSS-FLLKVWDGTKCPYP 336
Query: 200 PLSIPGKLEDEEHNPLPLH 218
+P + ++ E + + LH
Sbjct: 337 TWKVPVEAKELEGDRVLLH 355
>sp|A9JTY4|POT1C_ARATH Protection of telomeres protein 1c OS=Arabidopsis thaliana GN=POT1C
PE=2 SV=2
Length = 144
Score = 78.6 bits (192), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 74/114 (64%), Gaps = 2/114 (1%)
Query: 1 MSSQRNQGGIVRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPEL 60
M+ +R+ +++IK+ + +V+L+G+VLE P++ + D++C L+I+DD+ SP L
Sbjct: 1 MAKKRDSPKLIKIKDAIKLINQEVSLIGIVLEQREPKQCRNNDWICTLRIIDDTYPSPGL 60
Query: 61 LVNIFTSSIDQLPRVLSPRDLILLKNVMIKKHQA--ELSAVFYKDSSSFALFDG 112
VN+++ +++QLP++ + D+IL + ++ + ++A + SSFALF+G
Sbjct: 61 TVNVYSRTLEQLPQIKNHDDMILFTRIKMQTFDSGKRVNAACSRWVSSFALFEG 114
>sp|Q95K48|POTE1_MACFA Protection of telomeres protein 1 OS=Macaca fascicularis GN=POT1
PE=2 SV=1
Length = 634
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 91/178 (51%), Gaps = 12/178 (6%)
Query: 24 VNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLIL 83
VN+ GVV F P S+GTDY V+ IVD Q + +L +F+ + + LP + D++
Sbjct: 23 VNVYGVVKFFKPPYLSKGTDYCSVVTIVD--QTNVKLTCLLFSGNYEALPIIYKNGDIVR 80
Query: 84 LKNVMIKKHQAELSAVFYKDSSSFA--LFDGNSGSNLLPYQSSPQRFEITEAEERRINVL 141
+ I+ ++ E + SS FA F+G G+ ++P ++S + F T + + + L
Sbjct: 81 FHRLKIQVYKKETQGI---TSSGFASLTFEGTLGAPIIP-RTSSKYFNFTTEDHKMVETL 136
Query: 142 RQWCVGFEFSSGSNDYLLSLKDISEHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVP 199
R W S + LL L D+ +YFDL C++ + D ++L VWDGT P
Sbjct: 137 RVWASTHMSPSWT---LLKLCDVQPMQYFDLTCQLLGKAEVDGAS-FLLKVWDGTRTP 190
>sp|Q9NUX5|POTE1_HUMAN Protection of telomeres protein 1 OS=Homo sapiens GN=POT1 PE=1 SV=1
Length = 634
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 91/178 (51%), Gaps = 12/178 (6%)
Query: 24 VNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLIL 83
VN+ GVV F P S+GTDY V+ IVD Q + +L +F+ + + LP + D++
Sbjct: 23 VNVYGVVKFFKPPYLSKGTDYCSVVTIVD--QTNVKLTCLLFSGNYEALPIIYKNGDIVR 80
Query: 84 LKNVMIKKHQAELSAVFYKDSSSFA--LFDGNSGSNLLPYQSSPQRFEITEAEERRINVL 141
+ I+ ++ E + SS FA F+G G+ ++P ++S + F T + + + L
Sbjct: 81 FHRLKIQVYKKETQGI---TSSGFASLTFEGTLGAPIIP-RTSSKYFNFTTEDHKMVEAL 136
Query: 142 RQWCVGFEFSSGSNDYLLSLKDISEHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVP 199
R W S + LL L D+ +YFDL C++ + D ++L VWDGT P
Sbjct: 137 RVWASTHMSPSWT---LLKLCDVQPMQYFDLTCQLLGKAEVDGAS-FLLKVWDGTRTP 190
>sp|Q91WC1|POTE1_MOUSE Protection of telomeres protein 1 OS=Mus musculus GN=Pot1 PE=2 SV=1
Length = 640
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 88/175 (50%), Gaps = 12/175 (6%)
Query: 24 VNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLIL 83
N+ GVV F P S+GTDY V+ IVD Q + +L +F+ + + LP + D++
Sbjct: 23 ANVYGVVKFFKPPYVSKGTDYCSVVTIVD--QTNVKLTCMLFSGNYEALPIIYKVGDIVR 80
Query: 84 LKNVMIKKHQAELSAVFYKDSSSFA--LFDGNSGSNLLPYQSSPQRFEITEAEERRINVL 141
+ I+ ++ EL + + S FA F+G G + SS + F T +++ + L
Sbjct: 81 FHRLKIQVYKNELQGI---NCSGFASLTFEGTVGMPVTARTSS-KVFSFTPQDQKMVEAL 136
Query: 142 RQWCVGFEFSSGSNDYLLSLKDISEHRYFDLVCKVFHVSYDDSKGLWMLFVWDGT 196
R W +S + L+ L D +Y+DL C++ + DS ++L VWDGT
Sbjct: 137 RVWASKHISASST---LVQLCDAQPMQYYDLTCQLLGKAQVDSTA-FLLKVWDGT 187
>sp|P29550|TEBA_STYMY Telomere-binding protein subunit alpha OS=Stylonychia mytilis
GN=STY56V PE=3 SV=1
Length = 493
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 89/197 (45%), Gaps = 30/197 (15%)
Query: 11 VRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDS----------QQSPEL 60
V + + ++ + GVV++ + P K+ Y+C LK+VD S S
Sbjct: 36 VELNKASLTSAEAQHFYGVVIDATFPYKTNQERYICSLKVVDPSLYLKSQKGTGDASDYA 95
Query: 61 LVNIFTSSIDQLPRVLSPRDLILLKNVMIKKH--QAELSA-VFYKDSSSFALFDGNS--- 114
+ ++ + LP + D+I + ++ + Q + +A VFY +SS+ALF +
Sbjct: 96 TLVLYAKRFEDLPIIHRIGDIIRVHRATLRLYNGQRQFNANVFY--NSSWALFSTDKKSA 153
Query: 115 ---------GSNLLPYQSSPQRFEITEAEERRINVLRQWCVGF--EFSSGSNDYLLSL-K 162
S+L P+ S + + ++E + +R+W V + +++ S+D L K
Sbjct: 154 LQEIGGQEPASDLTPFAFSGKNYTFEKSEAALLQNIRKWAVQYFQQYNVISSDMFTPLNK 213
Query: 163 DISEHRYFDLVCKVFHV 179
++ FD+V K+ V
Sbjct: 214 AQAQKGDFDVVAKILQV 230
>sp|P29549|TEBA_OXYNO Telomere-binding protein subunit alpha OS=Oxytricha nova GN=MAC-56A
PE=1 SV=1
Length = 495
Score = 40.4 bits (93), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 83/180 (46%), Gaps = 30/180 (16%)
Query: 28 GVVLEFSIPRKSQGTDYVCVLKIVDDS----QQ------SPELLVNIFTSSIDQLPRVLS 77
VV++ + P K+ Y+C LKIVD + QQ S + ++ + LP +
Sbjct: 56 AVVIDATFPYKTNQERYICSLKIVDPTLYLKQQKGAGDASDYATLVLYAKRFEDLPIIHR 115
Query: 78 PRDLILLKNVMIKKH--QAELSA-VFYKDSSSFALF------------DGNSGSNLLPYQ 122
D+I + ++ + Q + +A VFY SSS+ALF + ++ S+ P+
Sbjct: 116 AGDIIRVHRATLRLYNGQRQFNANVFY--SSSWALFSTDKRSVTQEINNQDAVSDTTPFS 173
Query: 123 SSPQRFEITEAEERRINVLRQWCVGF--EFSSGSNDYLLSL-KDISEHRYFDLVCKVFHV 179
S + I + E + LR+W + +S S+D +L K ++ FD+V K+ V
Sbjct: 174 FSSKHATIEKNEISILQNLRKWANQYFSSYSVISSDMYTALNKAQAQKGDFDVVAKILQV 233
>sp|Q02931|UTP17_YEAST NET1-associated nuclear protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=NAN1 PE=1 SV=1
Length = 896
Score = 37.4 bits (85), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 89/196 (45%), Gaps = 35/196 (17%)
Query: 102 KDSSSFALFDGNSGSNLLPYQS----SPQRFEITEAEERRINVLRQWCVGFEFSSGSNDY 157
+D+ +F N +L Y+ SP+ F+I+ A+E+ NV S G+
Sbjct: 102 EDAHLITVFTNNGHVIVLNYKGKLVESPKHFKISLADEKLANVFH--------SEGNYRI 153
Query: 158 LLSLKDISEHRYFDLVC-KVFHVSYDDSKGLWML---FVWDGTDVPPLSIPGKL------ 207
L + KD S+ + L +++ +++DD+K + + W + +S GKL
Sbjct: 154 LTTFKDPSQKAHNSLQSYRLYALTFDDAKKQFEVAHQAEWHNVILSNISSNGKLLAHMCK 213
Query: 208 ----EDEEHNPLPLHIESSPLDLETLRNFFPVGTVLRVSTDRSYENFGRYFTATGKWVRI 263
+D EH + + S D +++ FP+G++L T +S RY ++ + I
Sbjct: 214 DVSTKDHEHKSISV---VSLFD-DSVNLSFPLGSILSSQT-QSLSYNTRYVSS----MAI 264
Query: 264 RNMSCQVSSGMWHGLL 279
NM Q++ G G++
Sbjct: 265 DNMGQQLAVGFASGVI 280
>sp|Q06183|TEBH_EUPCR Telomere-binding protein homolog OS=Euplotes crassus PE=3 SV=1
Length = 460
Score = 32.3 bits (72), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 26/106 (24%)
Query: 24 VNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPE-----LLVNIFTSSIDQLPRVLSP 78
+N VV++ P K Y+C LK++D + E +V + + + LP +
Sbjct: 35 INFYAVVIDACFPYKVDEKKYMCYLKVIDTTHNVKEGDDNFAIVALQSRKFEDLPIIQRC 94
Query: 79 RDLILLKNVMIKKHQAELSAVFYKD-----------SSSFALFDGN 113
D+I + H+AE + YKD SSS+ALF +
Sbjct: 95 GDIIRV-------HRAEYN---YKDDQHYFKLNMSYSSSWALFSAD 130
>sp|O97394|SDK_DROME Protein sidekick OS=Drosophila melanogaster GN=sdk PE=1 SV=2
Length = 2224
Score = 32.3 bits (72), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 13/89 (14%)
Query: 93 QAELSAVFYKDSSSFALFDGNSGSNL----------LPYQSSPQRFE-ITEAEERRINVL 141
Q E+ AV D S+A + G N LP+ S + E + E ++R INV
Sbjct: 604 QLEIQAVRASDVGSYACVVTSPGGNETRAARLSVIELPFPPSNVKVERLPEPQQRSINV- 662
Query: 142 RQWCVGFEFSSGSNDYLLSLKDISEHRYF 170
W GF+ +S + +++ +++SE F
Sbjct: 663 -SWTPGFDGNSPISKFIIQRREVSELEKF 690
>sp|P13330|Y03C_BPT4 Uncharacterized 10.3 kDa protein in Gp46-Gp47 intergenic region
OS=Enterobacteria phage T4 GN=y03C PE=4 SV=1
Length = 87
Score = 32.3 bits (72), Expect = 7.5, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 128 FEITEAEE---RRINVLRQWCVGFEFSSGSNDYLLSLKDISEHRYFDLVCKVFHV 179
FE E E+ +++ V W V F F+ ND SL+D++ D C+VF +
Sbjct: 33 FEPLEVEDNCIKKVTVCTDWAVSFNFNILDNDTPKSLRDMAVSCIKDAYCEVFDI 87
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 183,413,612
Number of Sequences: 539616
Number of extensions: 7880846
Number of successful extensions: 14360
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 14334
Number of HSP's gapped (non-prelim): 16
length of query: 465
length of database: 191,569,459
effective HSP length: 121
effective length of query: 344
effective length of database: 126,275,923
effective search space: 43438917512
effective search space used: 43438917512
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)