Query 012376
Match_columns 465
No_of_seqs 179 out of 234
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 08:15:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012376.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012376hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jb7_A Telomere-binding protei 100.0 3.7E-82 1.3E-86 664.5 32.6 388 3-463 31-494 (495)
2 1xjv_A Protection of telomeres 100.0 5E-60 1.7E-64 470.5 28.7 274 6-303 2-288 (294)
3 4hik_A Protection of telomeres 100.0 1.4E-33 4.6E-38 248.2 13.5 128 155-304 3-142 (143)
4 1qzg_A Protection of telomeres 100.0 1.6E-32 5.4E-37 250.6 17.6 142 6-148 25-174 (187)
5 4gop_C Putative uncharacterize 99.2 4.9E-09 1.7E-13 109.4 26.7 310 10-407 3-374 (444)
6 1jmc_A Protein (replication pr 98.5 3.8E-06 1.3E-10 80.3 18.6 225 7-303 5-240 (246)
7 2k50_A Replication factor A re 98.4 9.5E-07 3.2E-11 74.7 9.3 93 5-103 2-99 (115)
8 2k75_A Uncharacterized protein 98.2 4.6E-06 1.6E-10 69.6 9.6 88 8-108 1-91 (106)
9 1o7i_A SSB, SSO2364, single st 98.1 4E-05 1.4E-09 65.1 12.1 89 10-108 2-94 (119)
10 1jmc_A Protein (replication pr 98.0 2.2E-05 7.7E-10 74.9 10.4 92 5-101 121-218 (246)
11 4gop_C Putative uncharacterize 98.0 3.6E-05 1.2E-09 80.1 11.7 88 6-95 117-212 (444)
12 2kbn_A Conserved protein; nucl 97.7 0.0004 1.4E-08 58.0 11.7 84 10-103 5-88 (109)
13 3dm3_A Replication factor A; p 97.6 0.0002 7E-09 59.4 8.4 84 9-101 4-92 (105)
14 2k75_A Uncharacterized protein 97.5 0.0011 3.7E-08 55.0 12.0 87 159-293 4-98 (106)
15 2k50_A Replication factor A re 97.4 0.0011 3.6E-08 55.7 10.2 90 159-290 8-107 (115)
16 3e0e_A Replication protein A; 97.4 0.0008 2.7E-08 54.9 9.1 82 11-101 3-88 (97)
17 1o7i_A SSB, SSO2364, single st 97.3 0.002 6.8E-08 54.5 11.4 87 159-290 3-98 (119)
18 1wjj_A Hypothetical protein F2 97.3 0.004 1.4E-07 54.5 13.5 50 238-291 74-123 (145)
19 2kbn_A Conserved protein; nucl 97.3 0.0045 1.6E-07 51.5 12.9 89 159-291 6-97 (109)
20 1wjj_A Hypothetical protein F2 97.1 0.0016 5.6E-08 57.0 8.4 89 6-103 12-114 (145)
21 1xjv_A Protection of telomeres 96.8 0.11 3.7E-06 50.7 19.4 85 156-281 5-94 (294)
22 3dm3_A Replication factor A; p 96.7 0.018 6.2E-07 47.5 11.2 93 157-286 5-98 (105)
23 3e0e_A Replication protein A; 96.2 0.043 1.5E-06 44.5 10.3 92 159-286 3-94 (97)
24 1ynx_A Replication factor-A pr 95.7 0.073 2.5E-06 44.4 10.1 55 236-291 51-112 (114)
25 1jb7_A Telomere-binding protei 94.9 0.65 2.2E-05 48.5 16.4 104 156-289 37-150 (495)
26 1qzg_A Protection of telomeres 94.4 0.36 1.2E-05 43.7 11.2 86 161-282 36-128 (187)
27 3u4z_A Telomerase-associated p 93.9 0.53 1.8E-05 36.2 9.6 87 12-107 3-90 (109)
28 1l1o_C Replication protein A 7 93.6 0.54 1.9E-05 42.3 10.9 75 332-407 5-109 (181)
29 1ynx_A Replication factor-A pr 92.5 0.04 1.4E-06 46.0 1.5 82 9-96 3-89 (114)
30 4gop_B Putative uncharacterize 92.4 0.93 3.2E-05 38.7 10.2 69 22-101 37-109 (136)
31 1miu_A BRCA2, breast cancer ty 91.9 1.4 4.9E-05 47.7 12.9 152 44-270 511-670 (738)
32 3kdf_D Replication protein A 3 91.7 1.4 4.9E-05 37.3 10.5 69 22-100 32-103 (132)
33 3ebe_A Protein MCM10 homolog; 91.3 0.2 6.7E-06 46.1 4.8 82 7-90 35-123 (200)
34 3u58_A Tetrahymena TEB1 AB; te 90.6 1.8 6.2E-05 36.8 9.7 85 11-103 120-205 (213)
35 4hik_A Protection of telomeres 89.5 0.58 2E-05 40.6 6.0 77 9-94 4-101 (143)
36 2pi2_A Replication protein A 3 87.7 3.3 0.00011 39.5 10.7 81 11-101 49-144 (270)
37 3u50_C Telomerase-associated p 83.7 0.36 1.2E-05 43.3 1.5 33 372-404 71-103 (172)
38 4gop_B Putative uncharacterize 73.9 34 0.0012 28.7 11.0 81 166-292 35-118 (136)
39 3kdf_D Replication protein A 3 72.5 27 0.00093 29.1 10.0 81 168-293 32-114 (132)
40 3kf6_A Protein STN1; OB fold, 66.5 65 0.0022 28.0 11.3 29 167-197 47-75 (159)
41 2pi2_A Replication protein A 3 64.7 94 0.0032 29.2 13.6 81 168-293 72-154 (270)
42 3r8s_P 50S ribosomal protein L 59.4 18 0.00062 29.8 5.9 41 70-111 14-62 (114)
43 3kf6_A Protein STN1; OB fold, 58.9 13 0.00043 32.6 5.2 71 22-101 48-121 (159)
44 2ftc_K 39S ribosomal protein L 57.1 17 0.00058 29.2 5.2 43 72-115 1-50 (98)
45 1miu_A BRCA2, breast cancer ty 54.9 31 0.0011 37.4 8.3 71 12-93 598-672 (738)
46 3f2b_A DNA-directed DNA polyme 50.7 20 0.00069 40.6 6.3 84 9-98 6-93 (1041)
47 3v2d_T 50S ribosomal protein L 48.0 33 0.0011 29.4 5.8 41 70-111 17-65 (146)
48 3f2b_A DNA-directed DNA polyme 47.0 48 0.0016 37.6 8.6 40 159-198 8-51 (1041)
49 3mxn_A RECQ-mediated genome in 44.3 31 0.0011 30.1 5.2 70 328-403 17-87 (157)
50 3afp_A Single-stranded DNA-bin 35.1 35 0.0012 29.9 4.2 73 22-94 5-90 (168)
51 2hpi_A DNA polymerase III alph 34.8 26 0.0009 40.4 4.2 76 11-91 1027-1107(1220)
52 2zjr_M 50S ribosomal protein L 27.2 46 0.0016 29.2 3.5 42 70-112 22-71 (166)
53 2ibg_E Protein hedgehog, GH039 25.5 55 0.0019 28.2 3.6 30 236-265 105-139 (150)
54 3koj_A Uncharacterized protein 21.6 70 0.0024 25.9 3.4 26 238-263 54-79 (108)
No 1
>1jb7_A Telomere-binding protein alpha subunit; DNA-protein interactions, DNA HYDR sodium ION, quadruplex DNA, DNA-binding protein-DNA complex; 1.86A {Sterkiella nova} SCOP: b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1kix_A 1otc_A* 2i0q_A 1ph6_A 1ph1_A 1phj_A* 1ph3_A 1pa6_A 1ph4_A 1ph7_A 1ph8_A 1ph9_A 1ph5_A* 1ph2_A* 1k8g_A
Probab=100.00 E-value=3.7e-82 Score=664.48 Aligned_cols=388 Identities=20% Similarity=0.275 Sum_probs=334.0
Q ss_pred CCCCCcceeehHhhhhccCCEEEEEEEEEecCCccccCCCceEEEEEEEeCCCCC-----CCe-----EEEEecCCCCCC
Q 012376 3 SQRNQGGIVRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQS-----PEL-----LVNIFTSSIDQL 72 (465)
Q Consensus 3 ~~~~~y~y~~i~~~~~~~~~~vnviGVVvd~~~P~~trG~D~~~tl~I~D~s~~~-----~gl-----~v~iF~~~~~~L 72 (465)
+..++|+|++|++|....++.|||||||+|+++|++|+|+||+|||+|+|+|+.. .|| +|+||++++++|
T Consensus 31 ~~~~~y~y~~L~~a~~~~~~~VnviGVVvd~~~P~~T~G~D~~~t~tI~D~S~~~~~~~~~Gl~~~~~~v~iF~~~~e~L 110 (495)
T 1jb7_A 31 DKGHKYEYVELAKASLTSAQPQHFYAVVIDATFPYKTNQERYICSLKIVDPTLYLKQQKGAGDASDYATLVLYAKRFEDL 110 (495)
T ss_dssp -----CCBCCTTTSCSSCCSCEEEEEEEEEECCCEECSSSCEEEEEEEEBTTBSBCCTTSSCSCBCCEEEEEEESSGGGS
T ss_pred cccCCCccEEHHHHHhccCCeEEEEEEEeecCCceecCCCeEEEEEEEEeCCCCcccccccccccCceEEEEECCChHHC
Confidence 4578899999999998889999999999999999999999999999999999982 389 999999999999
Q ss_pred CCCCCCCCEEEEeeEEEEEEcCeeeEEecCCc-eEEEEEeCCC------------CCCCCccccCCCCCCCCHHHHHHHH
Q 012376 73 PRVLSPRDLILLKNVMIKKHQAELSAVFYKDS-SSFALFDGNS------------GSNLLPYQSSPQRFEITEAEERRIN 139 (465)
Q Consensus 73 P~v~~~GDII~l~rvki~~~~g~~~~~~~~~~-ss~~lf~~~~------------~~~~~Py~~s~~~~~~~~~e~~~v~ 139 (465)
|.|.++||||+|||++|+.|+|+++++++..+ ||||||++.. +.++.||+.|+.+|+++++|++++.
T Consensus 111 P~V~~~GDII~LhrvkIq~~ng~~~~v~~~~~~SswavF~~~~~~~~~~i~~~~~~~~~~P~~~S~~~~~~~~~d~~~v~ 190 (495)
T 1jb7_A 111 PIIHRAGDIIRVHRATLRLYNGQRQFNANVFYSSSWALFSTDKRSVTQEINNQDAVSDTTPFSFSSKHATIEKNEISILQ 190 (495)
T ss_dssp CCCCEETCEEEEEEEEEEEETTEEEEEEETTTTCEEEEECSSSSCHHHHHHTCCCSCTTSCSEESSSCCCCCTTHHHHHH
T ss_pred CCCCCCCCEEEEEEEEEEEECCcEEEEecCCCceEEEEEeCCccccccccCCcccCcccCCccccCCCccCCHHHHHHHH
Confidence 99988999999999999999999999998776 8999999987 6778999998667999999999999
Q ss_pred HHHHhhhcCccc---CCCcccccccc-cccCCceEeEEEEEEEEEeeCCCCeEEEEEEcCCCCCCCCCCCCCCcccCCCC
Q 012376 140 VLRQWCVGFEFS---SGSNDYLLSLK-DISEHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPL 215 (465)
Q Consensus 140 ~Lr~W~~~~~~~---~~~~~f~~~Lk-di~~~~f~Dlv~qVv~v~~~~~~~~~~L~VwDgT~~p~~~~~~~~~~~~~~~~ 215 (465)
.||+|+.++... .++.+| .+|+ ||++++||||+|||||++ ..++++++|||||||++|+++
T Consensus 191 ~LR~W~~~~~~~~~~~~~~~f-~~L~~di~~~~f~DLv~qVv~~~-~~d~~~~~L~VwDgT~~~~~~------------- 255 (495)
T 1jb7_A 191 NLRKWANQYFSSYSVISSDMY-TALNKAQAQKGDFDVVAKILQVH-ELDEYTNELKLKDASGQVFYT------------- 255 (495)
T ss_dssp HHHHHHHHHHHHSCSSCGGGS-CCGGGGGGCSSCEEEEEEEEEEE-ECSSSEEEEEEEETTCCEEEE-------------
T ss_pred HHHHHHHhcccccccccccch-hhhhhhhccCCceeEEEEEeEEe-ccCCCeEEEEEEeCCCCCcce-------------
Confidence 999999887653 355678 8999 999999999999999999 557899999999999998865
Q ss_pred CCccccCCCChhccccCCCc--ceEEEEEeccchhhhh-ccCCCCCcEEEEeCcEEEEeCcEEEEEEecCCceE------
Q 012376 216 PLHIESSPLDLETLRNFFPV--GTVLRVSTDRSYENFG-RYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIR------ 286 (465)
Q Consensus 216 p~~~~~~~l~~~~~~~~p~~--G~vL~V~~~~~~~~~~-~~~~k~G~wV~l~Nv~~k~~~g~leG~l~~~ski~------ 286 (465)
++.++++|.+ |++|+|..++..+..+ .+.++.|+| +||. ++..++|++
T Consensus 256 ----------~~~~~~fP~~~~G~Vlri~~~~~de~~~~l~~~~~~~w---~ni~----------~~~~~sk~~ke~~~~ 312 (495)
T 1jb7_A 256 ----------LSLKLKFPHVRTGEVVRIRSATYDETSTQKKVLILSHY---SNII----------TFIQSSKLAKELRAK 312 (495)
T ss_dssp ----------EEETTTCTTCCTTCEEEEEEEEECTTCCSSCEEEEEEE---EEEE----------EECTTCHHHHHHHHH
T ss_pred ----------eeccccCCceeeEEEEEEecCccchhhhhhhhhccccc---ccee----------EEcccchhhhhhhhc
Confidence 3457899988 9999999997776554 466889999 5777 566678887
Q ss_pred EcCCCChhHHHHHHHHHHHHhCCCCCCCCcCCCCCCCCcccc--cCCCccccHHHHhhC----CCCCcc--eEEEEEEEe
Q 012376 287 LFSDNDNVVWDYMRRFRERISGGHGHMPIWTDPSSQFLTEVD--WVNVASVTLMKIATQ----LQGNVR--CCCIVRVVS 358 (465)
Q Consensus 287 ~l~~~d~~v~~r~r~y~~r~~~~~~~~~~~~~~~~~~~t~~~--~~~~p~ttL~dIL~~----p~v~~k--fr~~VRVV~ 358 (465)
+++++ +.++. + +|+++.++++.+|+++ |+++|+|||||||++ |++++| |||.||||+
T Consensus 313 ~l~~~---~~~~~-----~-------~~~~~~~~~~~lT~~~~~~~~~p~ttL~dIL~~~~~~~~v~~K~~fr~~VRVV~ 377 (495)
T 1jb7_A 313 IQDDH---SVEVA-----S-------LKKNVSLNAVVLTEVDKKHAALPSTSLQDLFHHADSDKELQAQDTFRTQFYVTK 377 (495)
T ss_dssp SCCCC---HHHHH-----H-------TTSSSCSSCEECEEECGGGTTSCBCCHHHHHHTTTTCHHHHTCSEEEEEEEEEE
T ss_pred ccchh---hhhhh-----h-------cccccCCCCCcCCeecccCCCCCcEEHHHHhcCcccCccccccccEEEEEEEEE
Confidence 77665 33331 1 5677777888899988 999999999999988 889888 999999999
Q ss_pred ecCCCccccccC-----------C-----CCeEEEEEEEEeCCC-------ceEEEEEeccccchhcCCCCC--------
Q 012376 359 IHPFQAEHYSSP-----------N-----GSSEYTMKLTLEDPT-------ARIHALLCGKEWVKFFGGSPP-------- 407 (465)
Q Consensus 359 ~~P~~~edf~~~-----------~-----~~w~~rf~L~lED~t-------~ri~~~v~~~da~~f~~~~~~-------- 407 (465)
|||+++||||++ . |+++|||+|+|||+| +||+|||+|+||+.||+ +++
T Consensus 378 ~~P~~i~df~~~~~~~~~~~~s~~g~~~~~~~~~~f~LlveD~t~~~~~~~~ri~l~v~g~~~a~Fl~-l~a~nL~~n~~ 456 (495)
T 1jb7_A 378 IEPSDVKEWVKGYDRKTKKSSSLKGASGKGDNIFQVQFLVKDASTQLNNNTYRVLLYTQDGLGANFFN-VKADNLHKNAD 456 (495)
T ss_dssp EESSSGGGGEEEEETTTTEEECSTTCGGGCEEEEEEEEEEECGGGTTBSEEEEEEEECTTSTTTTTTS-SCCCCTTTCHH
T ss_pred ecCCCHHHhhhhhccccccccccccccCCCCceEEEEEEEecCCCCCCCcccEEEEEEeCcchheecC-CChHhhhcCHH
Confidence 999999999943 2 367999999999999 99999999999999998 643
Q ss_pred -hHHHHHHHHHHhCCCCCCCCCCCCccCCcceeeeeeeeeecCCceEEEEEeeeEEc
Q 012376 408 -PDVLTKKIKMLLGMPEHEDGNDDMVRNPPWIKCFLHLKESDGGRNRVYYIRWTKLV 463 (465)
Q Consensus 408 -~~~L~~kl~~L~G~~e~~~~~~~~~~n~pw~~CCi~sY~v~~~~~r~f~~F~T~i~ 463 (465)
+.+|||||..|.- ..+ ||+|||+. ++..|+||+|+|+
T Consensus 457 ~~~~L~e~~~~l~~-----------~~~--~~d~~~~~------~~~~y~~~~t~~~ 494 (495)
T 1jb7_A 457 ARKKLEDSAELLTK-----------FNS--YVDAVVER------RNGFYLIKDTKLI 494 (495)
T ss_dssp HHHHHHHHHHHHHS-----------TTE--EEEEEEEE------ETTEEEEESEEEC
T ss_pred HHHHHHHHHHHhcc-----------CCc--eEEEEEEe------ecceEEeeeeeec
Confidence 5899999998752 122 99999944 2779999999996
No 2
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A
Probab=100.00 E-value=5e-60 Score=470.54 Aligned_cols=274 Identities=23% Similarity=0.348 Sum_probs=238.7
Q ss_pred CCcceeehHhhhhccCCEEEEEEEEEecCCccccCCCceEEEEEEEeCCCCCCCeEEEEecCCCCCCCCCCCCCCEEEEe
Q 012376 6 NQGGIVRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILLK 85 (465)
Q Consensus 6 ~~y~y~~i~~~~~~~~~~vnviGVVvd~~~P~~trG~D~~~tl~I~D~s~~~~gl~v~iF~~~~~~LP~v~~~GDII~l~ 85 (465)
++|+|++|+++. .++.|||||||+|+++|++|+|+||+|||+|+|+|.. ||+|+||++++++||.+.++||||+||
T Consensus 2 ~~y~y~~l~~l~--~~~~vnvigVV~~~~~p~~s~G~d~~~tl~I~D~S~~--gl~v~iF~~~~~~LP~v~~~GDII~l~ 77 (294)
T 1xjv_A 2 TNYIYTPLNQLK--GGTIVNVYGVVKFFKPPYLSKGTDYCSVVTIVDQTNV--KLTCLLFSGNYEALPIIYKNGDIVRFH 77 (294)
T ss_dssp CCCCCCCGGGCC--SSEEEEEEEEEEEEEEEEECSSSSEEEEEEEECTTCC--EEEEEEEESSGGGSCCCCSTTCEEEEE
T ss_pred CcceEEEHHHhh--CCCeeEEEEEEEEcCCCccCCCCeEEEEEEEEcCCCC--CEEEEEECCChHHCCCCCCCCCEEEEE
Confidence 579999999884 6889999999999999999999999999999999974 699999999999999998899999999
Q ss_pred eEEEEEEcCeeeEEecCCceEEEEEeCCCCCCCCccccCCCCCCCCHHHHHHHHHHHHhhhcCcccCCCccccccccccc
Q 012376 86 NVMIKKHQAELSAVFYKDSSSFALFDGNSGSNLLPYQSSPQRFEITEAEERRINVLRQWCVGFEFSSGSNDYLLSLKDIS 165 (465)
Q Consensus 86 rvki~~~~g~~~~~~~~~~ss~~lf~~~~~~~~~Py~~s~~~~~~~~~e~~~v~~Lr~W~~~~~~~~~~~~f~~~Lkdi~ 165 (465)
|++|+.|+|+++++++.++ +|++|+|..+.++.|+++++. |+++++|++++..||+|+.++.... .+| ++|+||+
T Consensus 78 ~vki~~~~g~~~~v~~~~~-s~~~f~g~~~~~~~p~~~~~~-~~~~~~e~~~~~~Lr~w~~~~~~~~--~~~-~~L~di~ 152 (294)
T 1xjv_A 78 RLKIQVYKKETQGITSSGF-ASLTFEGTLGAPIIPRTSSKY-FNFTTEDHKMVEALRVWASTHMSPS--WTL-LKLCDVQ 152 (294)
T ss_dssp EEEEEEETTEEEEEEEEEE-EEEEECCSTTCCCCCBCSCSS-CCCCHHHHHHHHHHHHHHHHHCC-----CC-CCGGGCC
T ss_pred EEEEEEECCeEEEEccCCe-EEEEECCCCCCCcCCcccCCC-cCCCHHHHHHHHHHHHHHHhccCCC--Cce-eEHHHcc
Confidence 9999999999999998774 455899998888899776655 9999999999999999998776543 357 8999999
Q ss_pred CCceEeEEEEEEEEEeeCCCCeEEEEEEcCCCCCCCCCCCCCCcccCCCCCCccccCCCChhccccCCCcce-EEEEEec
Q 012376 166 EHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPVGT-VLRVSTD 244 (465)
Q Consensus 166 ~~~f~Dlv~qVv~v~~~~~~~~~~L~VwDgT~~p~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~p~~G~-vL~V~~~ 244 (465)
+++||||+||||+++ ..++++++|||||||+||+++++...++++.+++++.. + +.|+ +++|++|
T Consensus 153 ~~~f~DLv~qVv~v~-~~~~~~~~LyVwDgT~~~~~~~~~~~~~~~~~gd~~~~------~-------~~~~lt~~V~~~ 218 (294)
T 1xjv_A 153 PMQYFDLTCQLLGKA-EVDGASFLLKVWDGTRTPFPSWRVLIQDLVLEGDLSHI------H-------RLQNLTIDILVY 218 (294)
T ss_dssp SSCEEEEEEEEEEEE-ECSSSEEEEEEECSSCCSSCBCCCCCCSSCCEECHHHH------H-------HHGGGSEEEEEE
T ss_pred cCCeeeEEEEEEEEE-ecCCCeEEEEEECCCCCCCCccccccccccccCccccc------c-------cccCeeEEEEEE
Confidence 999999999999999 55789999999999999999988766654444443211 0 2467 8999999
Q ss_pred cchhhhhccCCCCCcEEEEeCcEEEEe--------CcEEEEEEecC----CceEEcCCCChhHHHHHHHHH
Q 012376 245 RSYENFGRYFTATGKWVRIRNMSCQVS--------SGMWHGLLQSS----SKIRLFSDNDNVVWDYMRRFR 303 (465)
Q Consensus 245 ~~~~~~~~~~~k~G~wV~l~Nv~~k~~--------~g~leG~l~~~----ski~~l~~~d~~v~~r~r~y~ 303 (465)
++|+.+++ .+|+||||+|+||++|+. +|.|||.||++ +||++|+.+++.++++++.-+
T Consensus 219 d~h~~~~~-~lk~Gd~V~l~Nv~~k~~~~~~~~~~~~~le~~lh~~~~~~~~i~~l~~~~~~~~~~~~~~~ 288 (294)
T 1xjv_A 219 DNHVHVAR-SLKVGSFLRIYSLHTKLQSMNSENQTMLSLEFHLHGGTSYGRGIRVLPESNSDVDQLKKDLE 288 (294)
T ss_dssp TTHHHHHH-HCCTTCEEEEEEEEEEEEEECTTSCEEEEEEEEECSSCGGGCEEEEECTTSHHHHHHHHHHH
T ss_pred cchhHHHh-cCCCCcEEEEeeeEEEecccccccCCCcceEEEEecCcccCcEeEEecCCCCCHHHHHHHHh
Confidence 99998765 899999999999999996 78999999998 489999999999887776544
No 3
>4hik_A Protection of telomeres protein 1; specificity, plasticity, promiscuity, OB-fold, ssDNA binding stranded telomeric DNA; HET: DNA; 1.64A {Schizosaccharomyces pombe} PDB: 4hid_A* 4him_A* 4hio_A* 4hj5_A* 4hj7_A* 4hj8_A* 4hj9_A* 4hja_A*
Probab=100.00 E-value=1.4e-33 Score=248.22 Aligned_cols=128 Identities=16% Similarity=0.281 Sum_probs=110.0
Q ss_pred cccccccccccCCceEeEEEEEEEEEeeCCCCeEEEEEEcCCCCCCCCCCCCCCcccCCCCCCccccCCCChhccccCC-
Q 012376 155 NDYLLSLKDISEHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFF- 233 (465)
Q Consensus 155 ~~f~~~Lkdi~~~~f~Dlv~qVv~v~~~~~~~~~~L~VwDgT~~p~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~p- 233 (465)
.|| ++|+||++++||||+||||+++++ + ++++|||||||+||.++ +...++ ....||
T Consensus 3 ~kf-~llkdv~~~~F~Dl~~qVv~~~~~-~-~~~~LyVTDYT~N~~~~-~~~~~~------------------~~~~W~G 60 (143)
T 4hik_A 3 DSF-SLLSQITPHQRCSFYAQVIKTWYS-D-KNFTLYVTDYTENELFF-PMSPYT------------------SSSRWRG 60 (143)
T ss_dssp -CC-CCGGGCCSSCEEEEEEEEEEEEEC-S-SCEEEEEECSCCCTTSC-CBCTTC------------------TTCSCCC
T ss_pred chh-hhHHhCCCCCeEEEEEEEEEEEcC-C-CeEEEEEecCCCCCccc-ccccCC------------------CCccccC
Confidence 478 999999999999999999999954 4 99999999999999988 332211 013799
Q ss_pred Ccce-EEEEEeccchhhhhccCCCCCcEEEEeCcEEEE-eCcEEEEEEecCC----ce--EEcCCCCh---hHHHHHHHH
Q 012376 234 PVGT-VLRVSTDRSYENFGRYFTATGKWVRIRNMSCQV-SSGMWHGLLQSSS----KI--RLFSDNDN---VVWDYMRRF 302 (465)
Q Consensus 234 ~~G~-vL~V~~~~~~~~~~~~~~k~G~wV~l~Nv~~k~-~~g~leG~l~~~s----ki--~~l~~~d~---~v~~r~r~y 302 (465)
|+|+ +|||+||++|+.++++++++|+||+|+||++|. .+|.|||+||+++ || .+|+++|+ ++++|+++|
T Consensus 61 p~G~~tlqVtlwd~ha~~ar~~lk~Gd~v~L~Nv~iK~~~~g~LEG~l~~dr~~~~ki~v~~ld~~~~~lk~ll~Rk~~Y 140 (143)
T 4hik_A 61 PFGRFSIRCILWDEHDFYCRNYIKEGDYVVMKNVRTKIDHLGYLECILHGDSAKRYNMSIEKVDSEEPELNEIKSRKRLY 140 (143)
T ss_dssp CCBSCCEEEEECHHHHHHHTTTCCTTCEEEEEEEEEEECTTSCEEEEECCCTTCCSCCEEEEECTTCGGGHHHHHHHGGG
T ss_pred CCCcEEEEEEEECcHHHHHHhhCCCCCEEEEEeEEEeecCCceEEEEEcCCCCCCCcceEEEcCCCCHHHHHHHHHHHHH
Confidence 9999 999999999999999999999999999999999 5789999999996 55 45887777 788999999
Q ss_pred HH
Q 012376 303 RE 304 (465)
Q Consensus 303 ~~ 304 (465)
|+
T Consensus 141 ~~ 142 (143)
T 4hik_A 141 VQ 142 (143)
T ss_dssp C-
T ss_pred hh
Confidence 86
No 4
>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} SCOP: b.40.4.3 PDB: 1qzh_A
Probab=100.00 E-value=1.6e-32 Score=250.62 Aligned_cols=142 Identities=20% Similarity=0.276 Sum_probs=123.7
Q ss_pred CCcceeehHhhhh--ccCCEEEEEEEEEecCCcccc-CCC-ceEEEEEEEeCCCC--CCCeEEEEecCCCCCCCCCCCCC
Q 012376 6 NQGGIVRIKELAM--HVKHKVNLLGVVLEFSIPRKS-QGT-DYVCVLKIVDDSQQ--SPELLVNIFTSSIDQLPRVLSPR 79 (465)
Q Consensus 6 ~~y~y~~i~~~~~--~~~~~vnviGVVvd~~~P~~t-rG~-D~~~tl~I~D~s~~--~~gl~v~iF~~~~~~LP~v~~~G 79 (465)
..++|++|++++. ..++.||+||||+|+++|++| +|+ ||+|||+|+|+|+. +.||+|+||++++++||.|.++|
T Consensus 25 ~~~~~~~~r~~l~~~~~g~~VNviGVVvd~~~P~~S~rGtkD~~~TltI~D~S~~~~~~gL~v~iF~~~~e~LP~V~~~G 104 (187)
T 1qzg_A 25 GELTFQSIRSSQELQKKNTIVNLFGIVKDFTPSRQSLHGTKDWVTTVYLWDPTCDTSSIGLQIHLFSKQGNDLPVIKQVG 104 (187)
T ss_dssp TTEEEECHHHHTSCCSSCEEEEEEEEEEEEEEEEECSSTTCCEEEEEEEECTTSCTTSCCEEEEEEESSSSCSCCCCSTT
T ss_pred cceeEEEHHHHHhhccCCCEEEEEEEEEEccCceecCCCCccEEEEEEEEeCCCCCCCCceEEEEECCChhhCCCCCCCC
Confidence 3588999999987 468889999999999999999 999 99999999999965 56999999999999999999999
Q ss_pred CEEEEeeEEEEEEcCeeeEEecCCceEEEEEeCCCCCCCCcccc--CCCCCCCCHHHHHHHHHHHHhhhcC
Q 012376 80 DLILLKNVMIKKHQAELSAVFYKDSSSFALFDGNSGSNLLPYQS--SPQRFEITEAEERRINVLRQWCVGF 148 (465)
Q Consensus 80 DII~l~rvki~~~~g~~~~~~~~~~ss~~lf~~~~~~~~~Py~~--s~~~~~~~~~e~~~v~~Lr~W~~~~ 148 (465)
|||+|||+|||.|+|++++++++. ++|++|++..+.+..|++. ++.++.++++|++|+..|++||..+
T Consensus 105 DIIlL~rvkiq~~~g~~~~v~~~~-~s~a~f~~~~~~~~~~~~~~~~p~~~~~~~~E~~ya~~L~~~w~~~ 174 (187)
T 1qzg_A 105 QPLLLHQITLRSYRDRTQGLSKDQ-FRYALWPDFSSNSKDTLCPQPMPRLMKTGDKEEQFALLLNKIWDEQ 174 (187)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEE-EEEEECCCTTCSCSCCSCCCCSTTBCCCCHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEEEEEECCeEEEEEcCc-eeEEEEeccCCCCCCCCCCccCccCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999877 4799999876544334333 3334899999999999999877643
No 5
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=99.20 E-value=4.9e-09 Score=109.39 Aligned_cols=310 Identities=11% Similarity=0.099 Sum_probs=193.0
Q ss_pred eeehHhhhhccCCEEEEEEEEEecCCccc---cCCCceEEEEEEEeCCCCCCCeEEEEecCCCCCC-CCCCCCCCEEEEe
Q 012376 10 IVRIKELAMHVKHKVNLLGVVLEFSIPRK---SQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQL-PRVLSPRDLILLK 85 (465)
Q Consensus 10 y~~i~~~~~~~~~~vnviGVVvd~~~P~~---trG~D~~~tl~I~D~s~~~~gl~v~iF~~~~~~L-P~v~~~GDII~l~ 85 (465)
+++|+++.... ....+.|-|+.....+. .+|..-..++.|.|++- .|.+.+|.+..+.+ |.+ ..|+++.|.
T Consensus 3 ~~~I~~L~p~~-~~w~I~~rV~~k~~ir~~~~~~~~g~~~~~~L~De~G---~I~at~~~~~~~~f~~~l-~eG~vy~Is 77 (444)
T 4gop_C 3 IYPIEGLSPYQ-NRWTIKARVTSKSDIRHWSNQRGEGKLFSVNLLDDSG---EIKATGFNDAVDRFYPLL-QENHVYLIS 77 (444)
T ss_dssp CCCSTTCCTTC-CSCEEEEECCEECCCEEEECSSCEEEEEEEEEECSSC---EEEEEEETHHHHHHTTTC-CTTCEEEEE
T ss_pred ceeHHHCCCCC-cceEEEEEEEEccCcceecCCCCCceEEEEEEEcCCC---EEEEEEeHHHHHHHHHhe-ecCCEEEEc
Confidence 67888887333 25899999998766542 24445678999999853 49999998755555 556 799999999
Q ss_pred eEEEEEEcCeeeEE-------ecCCceEEEEEeCCCCCCCCccccCCCCCCCCHHHHHHHHHHHHhhhcCcccCCCcccc
Q 012376 86 NVMIKKHQAELSAV-------FYKDSSSFALFDGNSGSNLLPYQSSPQRFEITEAEERRINVLRQWCVGFEFSSGSNDYL 158 (465)
Q Consensus 86 rvki~~~~g~~~~~-------~~~~~ss~~lf~~~~~~~~~Py~~s~~~~~~~~~e~~~v~~Lr~W~~~~~~~~~~~~f~ 158 (465)
+.+|+..+++.... ++.. |...... +..-.|. ..| .|
T Consensus 78 ~~~V~~~~~~y~~~~~~~ei~~~~~-T~V~~~~---d~~~iP~----~~~---------------------------~f- 121 (444)
T 4gop_C 78 KARVNIAKKQFSNLQNEYEITFENS-TEIEECT---DATDVPE----VKY---------------------------EF- 121 (444)
T ss_dssp SCEEEECCGGGCSCCCSEEEEECTT-CEEEECS---CCSSSCC----CCC---------------------------CB-
T ss_pred CCEEEecCCccccCCCCEEEEEcCC-cEEEEcc---CcccCcc----eee---------------------------cc-
Confidence 99999887654332 2211 2221111 1111120 011 24
Q ss_pred cccccc---cCCceEeEEEEEEEEEeeCC-------C---CeEEEEEEcCCCCCCCCCCCCCCcccCCCCCCccccCCCC
Q 012376 159 LSLKDI---SEHRYFDLVCKVFHVSYDDS-------K---GLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLD 225 (465)
Q Consensus 159 ~~Lkdi---~~~~f~Dlv~qVv~v~~~~~-------~---~~~~L~VwDgT~~p~~~~~~~~~~~~~~~~p~~~~~~~l~ 225 (465)
..|.|| ..+..+|+++.|+.+. +.. + .+..+.+-|.
T Consensus 122 ~~i~~i~~~~~~~~vDViG~V~~v~-~~~~i~~k~~g~~~~kr~i~L~D~------------------------------ 170 (444)
T 4gop_C 122 VRINELESVEANQQCDVIGILDSYG-ELSEIVSKASQRPVQKRELTLVDQ------------------------------ 170 (444)
T ss_dssp CCGGGGGGSCSSCCCBEEEEEEEEC-CCEEECCTTTCSCEEEEEEEEECT------------------------------
T ss_pred cCHHHHhccCCCCceEEEEEEEEcC-CcEEEEEccCCceeeEEEEEEEeC------------------------------
Confidence 455555 4688999999999886 311 0 0111112221
Q ss_pred hhccccCCCcceEEEEEeccchhhhhcc--CCCCCcEEEEeCcEEEEeCcEEEEEEecCCceEEcCCCChhHHHHHHHHH
Q 012376 226 LETLRNFFPVGTVLRVSTDRSYENFGRY--FTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDNDNVVWDYMRRFR 303 (465)
Q Consensus 226 ~~~~~~~p~~G~vL~V~~~~~~~~~~~~--~~k~G~wV~l~Nv~~k~~~g~leG~l~~~ski~~l~~~d~~v~~r~r~y~ 303 (465)
-|..+++++|..+|..... ....|..|.|++++++..+|. .......|+|. ++++-|++.+.+.-|.
T Consensus 171 ---------sg~~i~~tLWg~~A~~f~~~~~~~~~~VV~i~~~kV~~f~G~-~ls~~~~s~i~-inPdipea~~l~~w~~ 239 (444)
T 4gop_C 171 ---------GNRSVKLTLWGKTAETFPTNAGVDEKPVLAFKGVKVGDFGGR-SLSMFSSSTML-INPDITESHVLRGWYD 239 (444)
T ss_dssp ---------TCBEEEEEEEHHHHHTSTTSTTSSSCCEEEEESCEEECTTSS-EEECCTTCEEE-ESCSSHHHHHHHHHHH
T ss_pred ---------CCCEEEEEEEhhhhhhhhhhhccCCCCEEEEEeEEEeecCCe-EEeccccceEE-ECCCCHHHHHHHHHHH
Confidence 1567899999988875221 267899999999999987775 45555667774 5666778777665554
Q ss_pred HHHhCCCCCCCCcCCCCCC------CCcccccCCCccccHHHHhhC-C---CCCcceEEEEEEEeecCCCc------cc-
Q 012376 304 ERISGGHGHMPIWTDPSSQ------FLTEVDWVNVASVTLMKIATQ-L---QGNVRCCCIVRVVSIHPFQA------EH- 366 (465)
Q Consensus 304 ~r~~~~~~~~~~~~~~~~~------~~t~~~~~~~p~ttL~dIL~~-p---~v~~kfr~~VRVV~~~P~~~------ed- 366 (465)
..-+. .. ..++.+.. ..........+..||.||++. + ..+..|.+.+.|+.+-+.+. .+
T Consensus 240 ~~g~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~kti~~i~~~~~g~~~~~~~~~v~atI~~i~~~~~~Y~aC~~~~ 315 (444)
T 4gop_C 240 NDGAH-AQ---FQPYTNGGVGGGAMGGGGAGANMAERRTIVQVKDENLGMSEKPDYFNVRATVVYIKQENLYYTACASEG 315 (444)
T ss_dssp HHTTT-SC---CBCCCCCC---------CTTCCSSEECCHHHHHHTTTTSSSSCEEEEEEEEEEEECCTTCEEEECCSTT
T ss_pred cCCCC-cc---cccccccccccccccccccccccccceeHHHHhhhccCCCCCCcEEEEEEEEEEEcCCceEEccCCccc
Confidence 32211 11 01110000 011011123567899999963 2 23456888888888765332 10
Q ss_pred -------------ccc------CCCCeEEEEEEEEeCCCceEEEEEeccccchhcCCCCC
Q 012376 367 -------------YSS------PNGSSEYTMKLTLEDPTARIHALLCGKEWVKFFGGSPP 407 (465)
Q Consensus 367 -------------f~~------~~~~w~~rf~L~lED~t~ri~~~v~~~da~~f~~~~~~ 407 (465)
.|. ++..|.|++.+.|.|.|+.+++.++++.|+.+|| .++
T Consensus 316 C~kkv~~~~~g~~~C~~C~~~~~~~~~ry~l~~~v~D~Tg~~~~~~F~~~a~~llG-~sa 374 (444)
T 4gop_C 316 CNKKVNLDHENNWRCEKCDRSYATPEYRYILSTNVADATGQMWLSGFNEDATQLIG-MSA 374 (444)
T ss_dssp CCCBEEECTTSCEEETTTTEEESSCEEEECEEEEEEETTEEEEEEECHHHHHHHTT-SCH
T ss_pred CCCccccCCCccEECCCCCCcCccccEEEEEEEEEEeCCCCEEEEEehHHHHHHcC-CCH
Confidence 111 1236788889999999999999999999999995 443
No 6
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=98.54 E-value=3.8e-06 Score=80.31 Aligned_cols=225 Identities=18% Similarity=0.205 Sum_probs=137.1
Q ss_pred CcceeehHhhhhccCCEEEEEEEEEecCCccc---cCCCceEEEEEEEeCCCCCCCeEEEEecCCCCCC-CCCCCCCCEE
Q 012376 7 QGGIVRIKELAMHVKHKVNLLGVVLEFSIPRK---SQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQL-PRVLSPRDLI 82 (465)
Q Consensus 7 ~y~y~~i~~~~~~~~~~vnviGVVvd~~~P~~---trG~D~~~tl~I~D~s~~~~gl~v~iF~~~~~~L-P~v~~~GDII 82 (465)
+-.|++|+++.... ...++.|-|+....++. .+|..-..++.|.|++- .|.+.+|.+..+.+ |.+ ..|+++
T Consensus 5 ~~~~~~I~~L~p~~-~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~De~G---~I~at~~~~~~~~~~~~l-~~G~vy 79 (246)
T 1jmc_A 5 QSKVVPIASLTPYQ-SKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESG---EIRATAFNEQVDKFFPLI-EVNKVY 79 (246)
T ss_dssp --CBCCGGGCCTTC-CCCEEEEEEEEECCCEEEECSSCEEEEEEEEEECSSC---EEEEEEEHHHHHHHGGGC-CTTCEE
T ss_pred ccceEEHHHCCCCC-CceEEEEEEEEecccceeeCCCCCceEEEEEEECCCC---eEEEEEChHHHHHhhhhc-ccCCEE
Confidence 34688999997333 26899999999877653 24555678899999875 39999998654544 445 799999
Q ss_pred EEeeEEEEEEcCeee-------EEecCCceEEEEEeCCCCCCCCccccCCCCCCCCHHHHHHHHHHHHhhhcCcccCCCc
Q 012376 83 LLKNVMIKKHQAELS-------AVFYKDSSSFALFDGNSGSNLLPYQSSPQRFEITEAEERRINVLRQWCVGFEFSSGSN 155 (465)
Q Consensus 83 ~l~rvki~~~~g~~~-------~~~~~~~ss~~lf~~~~~~~~~Py~~s~~~~~~~~~e~~~v~~Lr~W~~~~~~~~~~~ 155 (465)
.+.+.+++..+++.. ..++.. |.....+.. .-.| ...|.+.
T Consensus 80 ~i~~~~v~~~~~~y~~~~~~~ei~~~~~-T~I~~~~~~---~~iP----~~~~~f~------------------------ 127 (246)
T 1jmc_A 80 YFSKGTLKIANKQFTAVKNDYEMTFNNE-TSVMPCEDD---HHLP----TVQFDFT------------------------ 127 (246)
T ss_dssp EEECCEEEECCGGGCCCCCSEEEECCTT-CEEEECCSC---SCCC----CCCCCBC------------------------
T ss_pred EECCCEEEEcccCcccCCCCEEEEEcCC-cEEEEccCc---ccCC----cceeeeE------------------------
Confidence 999999998754432 333322 222211111 0012 1112221
Q ss_pred ccccccccccCCceEeEEEEEEEEEeeCCCCeEEEEEEcCCCCCCCCCCCCCCcccCCCCCCccccCCCChhccccCCCc
Q 012376 156 DYLLSLKDISEHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPV 235 (465)
Q Consensus 156 ~f~~~Lkdi~~~~f~Dlv~qVv~v~~~~~~~~~~L~VwDgT~~p~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~p~~ 235 (465)
+| ..|.++..+.++|+++.|+.+. +.. .+.- -.||++..... ..+.| .-
T Consensus 128 ~i-~~i~~~~~~~~vDViG~V~~v~-~~~--~~~~-k~~g~~~~~r~--~~l~D------------------------~s 176 (246)
T 1jmc_A 128 GI-DDLENKSKDSLVDIIGICKSYE-DAT--KITV-RSNNREVAKRN--IYLMD------------------------TS 176 (246)
T ss_dssp CG-GGGGGSCTTCEEEEEEEEEEEC-CCE--EEEE-TTTTEEEEEEE--EEEEC------------------------TT
T ss_pred EH-HHHhcccCCCceeEEEEEEEec-CeE--EEEE-ecCCCccEEEE--EEEEC------------------------CC
Confidence 12 3344445788999999999887 311 1000 00222110000 00000 11
Q ss_pred ceEEEEEeccchhhhhccCCCCCcEEEEeCcEEEEeCcEEEEEEecCCceEEcCCCChhHHHHHHHHH
Q 012376 236 GTVLRVSTDRSYENFGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDNDNVVWDYMRRFR 303 (465)
Q Consensus 236 G~vL~V~~~~~~~~~~~~~~k~G~wV~l~Nv~~k~~~g~leG~l~~~ski~~l~~~d~~v~~r~r~y~ 303 (465)
|+++++++|..+|.. -..+.|+.|.|++++++..+| .+......|+|. ++++-+++.+.+.=|.
T Consensus 177 g~~i~~tLWg~~a~~--~~~~~~~vv~i~~~~v~~f~g-~~ls~~~~s~i~-inpd~pe~~~l~~w~~ 240 (246)
T 1jmc_A 177 GKVVTATLWGEDADK--FDGSRQPVLAIKGARVSDFGG-RSLSVLSSSTII-ANPDIPEAYKLRGWFD 240 (246)
T ss_dssp CCEEEEEEEHHHHHH--CCCTTCCEEEEEEEEEECTTS-SEEECCSSCEEE-SSCCSHHHHHHHHHHH
T ss_pred CCEEEEEEEchhhhh--cccCCCCEEEEEEEEEEecCC-eEEEecCcceEE-ECCCCHHHHHHHHHHH
Confidence 668899999988874 226889999999999988865 555666677884 6777788776655443
No 7
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=98.41 E-value=9.5e-07 Score=74.67 Aligned_cols=93 Identities=24% Similarity=0.343 Sum_probs=77.1
Q ss_pred CCCcceeehHhhhhccCCEEEEEEEEEecCCcc--ccC-CC-ceEEEEEEEeCCCCCCCeEEEEecCCCCCCCCCCCCCC
Q 012376 5 RNQGGIVRIKELAMHVKHKVNLLGVVLEFSIPR--KSQ-GT-DYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRD 80 (465)
Q Consensus 5 ~~~y~y~~i~~~~~~~~~~vnviGVVvd~~~P~--~tr-G~-D~~~tl~I~D~s~~~~gl~v~iF~~~~~~LP~v~~~GD 80 (465)
..+|.+++|+++. .|+.++++|+|++.+.++ .++ |+ .-+.+++|.|.|- .|.+.+|.+..+.+..+ ..||
T Consensus 2 ~~~~~~~~I~~L~--~g~~v~i~~~V~~~~~~~~~~~k~G~~~~~~~~~l~D~TG---~I~~t~w~~~~~~~~~l-~~G~ 75 (115)
T 2k50_A 2 KPEHRMDTISKLE--EGAETPVTGRVMKISSPRTFTTRKGREGKLANVIIADDTG---ELRAVFWTENIKLLKKF-REGD 75 (115)
T ss_dssp CCTTCCCCTTTCC--TTCEEEEEEEEEEECCCEECCCTTSSCCEEEEEEEEETTE---EEEEEEETTGGGGGGTC-CTTS
T ss_pred ccccceEEHHHCC--CCCEeEEEEEEEECCCceEEEcCCCCEEEEEEEEEEeCCC---eEEEEEeCchhhhhhcC-CCCC
Confidence 3578899999997 789999999999998776 454 43 5789999999975 39999998765666667 6899
Q ss_pred EEEEeeEEEEE-EcCeeeEEecCC
Q 012376 81 LILLKNVMIKK-HQAELSAVFYKD 103 (465)
Q Consensus 81 II~l~rvki~~-~~g~~~~~~~~~ 103 (465)
+|.+.+..++. |+|++++.....
T Consensus 76 vv~i~g~~v~~~f~g~~qL~~~~~ 99 (115)
T 2k50_A 76 VIRIKDVNIRGGFGGRKEAHLMPR 99 (115)
T ss_dssp EEEEEEEEECCCSSSSCEEEECTT
T ss_pred EEEEEeeEEccccCCeEEEEECCC
Confidence 99999999987 999999887644
No 8
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=98.25 E-value=4.6e-06 Score=69.60 Aligned_cols=88 Identities=18% Similarity=0.302 Sum_probs=71.7
Q ss_pred cceeehHhhhhccCCE-EEEEEEEEecCCccccC-CCc-eEEEEEEEeCCCCCCCeEEEEecCCCCCCCCCCCCCCEEEE
Q 012376 8 GGIVRIKELAMHVKHK-VNLLGVVLEFSIPRKSQ-GTD-YVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILL 84 (465)
Q Consensus 8 y~y~~i~~~~~~~~~~-vnviGVVvd~~~P~~tr-G~D-~~~tl~I~D~s~~~~gl~v~iF~~~~~~LP~v~~~GDII~l 84 (465)
|.++.|+|+. ++.. ||++|.|++...|+.++ |+. ..+++.|.|+|= .|.+.++.+. + ..||+|+|
T Consensus 1 ~~~~kI~dl~--pg~~~v~v~~~V~~~~~~~~~k~G~~~~v~~~~l~DeTG---~I~~tlW~~~------l-~~Gdvv~i 68 (106)
T 2k75_A 1 SDLVKIRDVS--LSTPYVSVIGKITGIHKKEYESDGTTKSVYQGYIEDDTA---RIRISSFGKQ------L-QDSDVVRI 68 (106)
T ss_dssp CCBCCSTTCC--TTCSEEEEEEEEEEEEEEEEEETTEEEEEEEEEEECSSC---EEEEEEESSC------C-CTTEEEEE
T ss_pred CCcEEHHHcC--CCCceEEEEEEEEEccccccccCCCeeEEEEEEEEcCCC---eEEEEEEcCc------c-CCCCEEEE
Confidence 6788999997 5554 99999999999886444 543 588999999975 3999999864 5 78999999
Q ss_pred eeEEEEEEcCeeeEEecCCceEEE
Q 012376 85 KNVMIKKHQAELSAVFYKDSSSFA 108 (465)
Q Consensus 85 ~rvki~~~~g~~~~~~~~~~ss~~ 108 (465)
++.+++.|+|++++..++. +...
T Consensus 69 ~ng~v~~~~g~~~L~v~~~-~~I~ 91 (106)
T 2k75_A 69 DNARVAQFNGYLSLSVGDS-SRIE 91 (106)
T ss_dssp EEEEEEEETTEEEEEECTT-SEEE
T ss_pred EeeEEeEECCEEEEEECCc-EEEE
Confidence 9999999999999988754 4443
No 9
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=98.07 E-value=4e-05 Score=65.08 Aligned_cols=89 Identities=13% Similarity=0.201 Sum_probs=70.6
Q ss_pred eeehHhhhhccCC-EEEEEEEEEecCCcc--ccC-CCceEEEEEEEeCCCCCCCeEEEEecCCCCCCCCCCCCCCEEEEe
Q 012376 10 IVRIKELAMHVKH-KVNLLGVVLEFSIPR--KSQ-GTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILLK 85 (465)
Q Consensus 10 y~~i~~~~~~~~~-~vnviGVVvd~~~P~--~tr-G~D~~~tl~I~D~s~~~~gl~v~iF~~~~~~LP~v~~~GDII~l~ 85 (465)
|+.|+++. .+. .++++|+|++...++ .++ |+--..++.|.|.|-. |.++++.+..+ .+ ..||||.++
T Consensus 2 f~~I~dL~--~~~~~v~~~~~V~~~~~~~~~~~k~G~~~~~~~~l~D~TG~---I~~tlW~~~~~---~~-~~G~vv~i~ 72 (119)
T 1o7i_A 2 EEKVGNLK--PNMESVNVTVRVLEASEARQIQTKNGVRTISEAIVGDETGR---VKLTLWGKHAG---SI-KEGQVVKIE 72 (119)
T ss_dssp BCCGGGCC--TTCSSEEEEEEEEEECCCEEECCTTCCEEEEEEEEEETTEE---EEEEEEGGGTT---CC-CTTCEEEEE
T ss_pred cEEHHHCc--CCCCcEEEEEEEEECCCCeeEEecCCCEEEEEEEEEeCCCE---EEEEEECChhh---cC-CCCCEEEEE
Confidence 67789987 454 699999999998766 454 4347899999999752 99999986543 24 689999999
Q ss_pred eEEEEEEcCeeeEEecCCceEEE
Q 012376 86 NVMIKKHQAELSAVFYKDSSSFA 108 (465)
Q Consensus 86 rvki~~~~g~~~~~~~~~~ss~~ 108 (465)
+.+++.|+|++++..++. +...
T Consensus 73 ~g~v~~~~g~~qL~i~~~-~~i~ 94 (119)
T 1o7i_A 73 NAWTTAFKGQVQLNAGSK-TKIA 94 (119)
T ss_dssp EEEEEEETTEEEEEECTT-CEEE
T ss_pred eEEEEEeCCEEEEEECCC-EEEE
Confidence 999999999999887744 4444
No 10
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=98.01 E-value=2.2e-05 Score=74.93 Aligned_cols=92 Identities=13% Similarity=0.198 Sum_probs=72.3
Q ss_pred CCCcceeehHhhhhc-cCCEEEEEEEEEecCCccc--c--CCCc-eEEEEEEEeCCCCCCCeEEEEecCCCCCCCCCCCC
Q 012376 5 RNQGGIVRIKELAMH-VKHKVNLLGVVLEFSIPRK--S--QGTD-YVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSP 78 (465)
Q Consensus 5 ~~~y~y~~i~~~~~~-~~~~vnviGVVvd~~~P~~--t--rG~D-~~~tl~I~D~s~~~~gl~v~iF~~~~~~LP~v~~~ 78 (465)
...|.|++|+++.+. .+..|+|+|+|++++++.. + .|++ .+..|+|.|.|-. .|.|.++.+..+.++. ..
T Consensus 121 ~~~~~f~~i~~i~~~~~~~~vDViG~V~~v~~~~~~~~k~~g~~~~~r~~~l~D~sg~--~i~~tLWg~~a~~~~~--~~ 196 (246)
T 1jmc_A 121 TVQFDFTGIDDLENKSKDSLVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDTSGK--VVTATLWGEDADKFDG--SR 196 (246)
T ss_dssp CCCCCBCCGGGGGGSCTTCEEEEEEEEEEECCCEEEEETTTTEEEEEEEEEEECTTCC--EEEEEEEHHHHHHCCC--TT
T ss_pred cceeeeEEHHHHhcccCCCceeEEEEEEEecCeEEEEEecCCCccEEEEEEEECCCCC--EEEEEEEchhhhhccc--CC
Confidence 346889999999863 5678999999999998754 2 3554 5789999999853 4999999986666763 57
Q ss_pred CCEEEEeeEEEEEEcCeeeEEec
Q 012376 79 RDLILLKNVMIKKHQAELSAVFY 101 (465)
Q Consensus 79 GDII~l~rvki~~~~g~~~~~~~ 101 (465)
|+||.++.++++.|+| ..+...
T Consensus 197 ~~vv~i~~~~v~~f~g-~~ls~~ 218 (246)
T 1jmc_A 197 QPVLAIKGARVSDFGG-RSLSVL 218 (246)
T ss_dssp CCEEEEEEEEEECTTS-SEEECC
T ss_pred CCEEEEEEEEEEecCC-eEEEec
Confidence 9999999999999955 555443
No 11
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=97.96 E-value=3.6e-05 Score=80.06 Aligned_cols=88 Identities=15% Similarity=0.288 Sum_probs=70.4
Q ss_pred CCcceeehHhhhhc-cCCEEEEEEEEEecCCccc--c--CCC-ceEEEEEEEeCCCCCCCeEEEEecCCCCCCCC--CCC
Q 012376 6 NQGGIVRIKELAMH-VKHKVNLLGVVLEFSIPRK--S--QGT-DYVCVLKIVDDSQQSPELLVNIFTSSIDQLPR--VLS 77 (465)
Q Consensus 6 ~~y~y~~i~~~~~~-~~~~vnviGVVvd~~~P~~--t--rG~-D~~~tl~I~D~s~~~~gl~v~iF~~~~~~LP~--v~~ 77 (465)
..|.|++|+++.+. .+..|+|||+|+++++++. + .|+ -.+..|+|.|.|-. .|.|.++.+..+.+.. ...
T Consensus 117 ~~~~f~~i~~i~~~~~~~~vDViG~V~~v~~~~~i~~k~~g~~~~kr~i~L~D~sg~--~i~~tLWg~~A~~f~~~~~~~ 194 (444)
T 4gop_C 117 VKYEFVRINELESVEANQQCDVIGILDSYGELSEIVSKASQRPVQKRELTLVDQGNR--SVKLTLWGKTAETFPTNAGVD 194 (444)
T ss_dssp CCCCBCCGGGGGGSCSSCCCBEEEEEEEECCCEEECCTTTCSCEEEEEEEEECTTCB--EEEEEEEHHHHHTSTTSTTSS
T ss_pred eeecccCHHHHhccCCCCceEEEEEEEEcCCcEEEEEccCCceeeEEEEEEEeCCCC--EEEEEEEhhhhhhhhhhhccC
Confidence 46889999999863 5667999999999998753 2 354 57889999999863 3999999876665552 125
Q ss_pred CCCEEEEeeEEEEEEcCe
Q 012376 78 PRDLILLKNVMIKKHQAE 95 (465)
Q Consensus 78 ~GDII~l~rvki~~~~g~ 95 (465)
.|+||.++.++|+.|+|.
T Consensus 195 ~~~VV~i~~~kV~~f~G~ 212 (444)
T 4gop_C 195 EKPVLAFKGVKVGDFGGR 212 (444)
T ss_dssp SCCEEEEESCEEECTTSS
T ss_pred CCCEEEEEeEEEeecCCe
Confidence 799999999999999996
No 12
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=97.70 E-value=0.0004 Score=57.99 Aligned_cols=84 Identities=15% Similarity=0.232 Sum_probs=66.5
Q ss_pred eeehHhhhhccCCEEEEEEEEEecCCccccCCCceEEEEEEEeCCCCCCCeEEEEecCCCCCCCCCCCCCCEEEEeeEEE
Q 012376 10 IVRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILLKNVMI 89 (465)
Q Consensus 10 y~~i~~~~~~~~~~vnviGVVvd~~~P~~trG~D~~~tl~I~D~s~~~~gl~v~iF~~~~~~LP~v~~~GDII~l~rvki 89 (465)
++.|+|+... +..||++|.|++...|+ .|+.+ ..+.|-|+|= .|++.++.+. ..+.+ ..||+|+|+++++
T Consensus 5 ~~kI~dl~~~-~~~v~v~~~V~~~~~~~--~~~~~-~~~~l~DeTG---~I~~t~W~~~--~~~~~-~~G~~V~i~n~~v 74 (109)
T 2kbn_A 5 LTKIVDIVEN-GQWANLKAKVIQLWENT--HESIS-QVGLLGDETG---IIKFTIWKNA--ELPLL-EQGESYLLRSVVV 74 (109)
T ss_dssp BCCTTTCCST-TCEEEEEEEEEEEEECC--CSSEE-EEEEEECTTC---CEEEEEEGGG--CCCCC-CTTCEEEEEEEEE
T ss_pred ceEHHHCCCC-CCcEEEEEEEEEeEcCC--CCeEE-EEEEEECCCC---eEEEEEECcc--ccccc-CCCCEEEEEEEEE
Confidence 5568888632 56799999999998753 23444 4588999975 3999999843 56788 6899999999999
Q ss_pred EEEcCeeeEEecCC
Q 012376 90 KKHQAELSAVFYKD 103 (465)
Q Consensus 90 ~~~~g~~~~~~~~~ 103 (465)
+.|+|++++..++.
T Consensus 75 ~~~~G~~~L~v~~~ 88 (109)
T 2kbn_A 75 GEYNDRFQVQVNKN 88 (109)
T ss_dssp EEETTEEEEEECSS
T ss_pred EEECCEEEEEECCc
Confidence 99999999988744
No 13
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=97.60 E-value=0.0002 Score=59.39 Aligned_cols=84 Identities=15% Similarity=0.203 Sum_probs=66.0
Q ss_pred ceeehHhhhhccCCEEEEEEEEEecCCcccc---CCC-ceEEEEEEEeCCCCCCCeEEEEecCCCCCCCCCCCCCCEEEE
Q 012376 9 GIVRIKELAMHVKHKVNLLGVVLEFSIPRKS---QGT-DYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILL 84 (465)
Q Consensus 9 ~y~~i~~~~~~~~~~vnviGVVvd~~~P~~t---rG~-D~~~tl~I~D~s~~~~gl~v~iF~~~~~~LP~v~~~GDII~l 84 (465)
.|.+|+++. ++..+|++|+|++.++++.- .|+ -...+++|.|.|- .+.+.+|.+..+ + .+ .+||+|.+
T Consensus 4 ~~~~I~dL~--~~~~v~v~g~V~~~~~~r~~~~~~G~~~~v~~~~l~D~TG---~IrvtlW~~~a~-~-~l-~~Gdvv~i 75 (105)
T 3dm3_A 4 DTYNIGELS--PGMTATFEGEVISALPIKEFKRADGSIGKLKSFIVRDETG---SIRVTLWDNLTD-I-DV-GRGDYVRV 75 (105)
T ss_dssp CEECGGGCC--SSEEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEETTE---EEEEEEEGGGGG-S-CC-CTTCEEEE
T ss_pred cceEHHHCC--CCCeEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCC---cEEEEEECcccc-c-cc-CCCCEEEE
Confidence 578999998 56789999999999987542 354 4678899999865 399999987544 4 55 79999999
Q ss_pred eeEEEEEEc-CeeeEEec
Q 012376 85 KNVMIKKHQ-AELSAVFY 101 (465)
Q Consensus 85 ~rvki~~~~-g~~~~~~~ 101 (465)
+..++..+ |.+.+...
T Consensus 76 -~g~vk~~~~g~~eL~~g 92 (105)
T 3dm3_A 76 -RGYIREGYYGGLECTAN 92 (105)
T ss_dssp -EEEEEECTTSSEEEEEE
T ss_pred -EEEEEEccCCCEEEEeC
Confidence 89999884 47776654
No 14
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=97.54 E-value=0.0011 Score=55.04 Aligned_cols=87 Identities=20% Similarity=0.234 Sum_probs=66.3
Q ss_pred cccccccCCce-EeEEEEEEEEEeeCC---CC----eEEEEEEcCCCCCCCCCCCCCCcccCCCCCCccccCCCChhccc
Q 012376 159 LSLKDISEHRY-FDLVCKVFHVSYDDS---KG----LWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLR 230 (465)
Q Consensus 159 ~~Lkdi~~~~f-~Dlv~qVv~v~~~~~---~~----~~~L~VwDgT~~p~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 230 (465)
..|+||+++.- ++++++|+.+. +.. ++ -..+.|=|-|
T Consensus 4 ~kI~dl~pg~~~v~v~~~V~~~~-~~~~~k~G~~~~v~~~~l~DeT---------------------------------- 48 (106)
T 2k75_A 4 VKIRDVSLSTPYVSVIGKITGIH-KKEYESDGTTKSVYQGYIEDDT---------------------------------- 48 (106)
T ss_dssp CCSTTCCTTCSEEEEEEEEEEEE-EEEEEETTEEEEEEEEEEECSS----------------------------------
T ss_pred EEHHHcCCCCceEEEEEEEEEcc-ccccccCCCeeEEEEEEEEcCC----------------------------------
Confidence 67999999865 89999999988 421 11 1112222211
Q ss_pred cCCCcceEEEEEeccchhhhhccCCCCCcEEEEeCcEEEEeCcEEEEEEecCCceEEcCCCCh
Q 012376 231 NFFPVGTVLRVSTDRSYENFGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDNDN 293 (465)
Q Consensus 231 ~~p~~G~vL~V~~~~~~~~~~~~~~k~G~wV~l~Nv~~k~~~g~leG~l~~~ski~~l~~~d~ 293 (465)
| ++++++|+.. +++|+.|+++|..++...|.++..+...+.|..+++.++
T Consensus 49 -----G-~I~~tlW~~~-------l~~Gdvv~i~ng~v~~~~g~~~L~v~~~~~I~~~~~~~~ 98 (106)
T 2k75_A 49 -----A-RIRISSFGKQ-------LQDSDVVRIDNARVAQFNGYLSLSVGDSSRIESVNVNIP 98 (106)
T ss_dssp -----C-EEEEEEESSC-------CCTTEEEEEEEEEEEEETTEEEEEECTTSEEEECCSCCC
T ss_pred -----C-eEEEEEEcCc-------cCCCCEEEEEeeEEeEECCEEEEEECCcEEEEECCCCCc
Confidence 3 5789999854 899999999999999999999999999999988876554
No 15
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=97.38 E-value=0.0011 Score=55.66 Aligned_cols=90 Identities=17% Similarity=0.162 Sum_probs=69.4
Q ss_pred cccccccCCceEeEEEEEEEEEeeCC---------CCeEEEEEEcCCCCCCCCCCCCCCcccCCCCCCccccCCCChhcc
Q 012376 159 LSLKDISEHRYFDLVCKVFHVSYDDS---------KGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETL 229 (465)
Q Consensus 159 ~~Lkdi~~~~f~Dlv~qVv~v~~~~~---------~~~~~L~VwDgT~~p~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 229 (465)
..|+|+++|..+|+++.|+.+. +.. .....+.|.|.|
T Consensus 8 ~~I~~L~~g~~v~i~~~V~~~~-~~~~~~~k~G~~~~~~~~~l~D~T--------------------------------- 53 (115)
T 2k50_A 8 DTISKLEEGAETPVTGRVMKIS-SPRTFTTRKGREGKLANVIIADDT--------------------------------- 53 (115)
T ss_dssp CCTTTCCTTCEEEEEEEEEEEC-CCEECCCTTSSCCEEEEEEEEETT---------------------------------
T ss_pred EEHHHCCCCCEeEEEEEEEECC-CceEEEcCCCCEEEEEEEEEEeCC---------------------------------
Confidence 6799999999999999999884 211 123445555544
Q ss_pred ccCCCcceEEEEEeccchhhhhccCCCCCcEEEEeCcEEEE-eCcEEEEEEecCCceEEcCC
Q 012376 230 RNFFPVGTVLRVSTDRSYENFGRYFTATGKWVRIRNMSCQV-SSGMWHGLLQSSSKIRLFSD 290 (465)
Q Consensus 230 ~~~p~~G~vL~V~~~~~~~~~~~~~~k~G~wV~l~Nv~~k~-~~g~leG~l~~~ski~~l~~ 290 (465)
| .+++++|+..+.. .+.+++|+.|.+.|..++. ..|.++..+...+.|...++
T Consensus 54 ------G-~I~~t~w~~~~~~-~~~l~~G~vv~i~g~~v~~~f~g~~qL~~~~~~~i~~~~~ 107 (115)
T 2k50_A 54 ------G-ELRAVFWTENIKL-LKKFREGDVIRIKDVNIRGGFGGRKEAHLMPRSTVEVLDP 107 (115)
T ss_dssp ------E-EEEEEEETTGGGG-GGTCCTTSEEEEEEEEECCCSSSSCEEEECTTCCEEEESS
T ss_pred ------C-eEEEEEeCchhhh-hhcCCCCCEEEEEeeEEccccCCeEEEEECCCceEEECCc
Confidence 2 5689999987664 4679999999999999876 77888888988888877654
No 16
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=97.38 E-value=0.0008 Score=54.90 Aligned_cols=82 Identities=17% Similarity=0.177 Sum_probs=62.7
Q ss_pred eehHhhhhccCCEEEEEEEEEecCCccc-cC--CC-ceEEEEEEEeCCCCCCCeEEEEecCCCCCCCCCCCCCCEEEEee
Q 012376 11 VRIKELAMHVKHKVNLLGVVLEFSIPRK-SQ--GT-DYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILLKN 86 (465)
Q Consensus 11 ~~i~~~~~~~~~~vnviGVVvd~~~P~~-tr--G~-D~~~tl~I~D~s~~~~gl~v~iF~~~~~~LP~v~~~GDII~l~r 86 (465)
.+|+++. ++..++++|.|++..+++. ++ |+ --..+++|.|+|- .|.+.+|.+.. .+ .+ ++||+|.+ +
T Consensus 3 ~kI~dl~--~g~~v~i~~~V~~~~~~r~~~~~~G~~~~v~~~~l~DeTG---~I~~tlW~~~~-~~-~i-~~Gdvv~i-~ 73 (97)
T 3e0e_A 3 YKISELM--PNLSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLKDDTG---SIRGTLWNELA-DF-EV-KKGDIAEV-S 73 (97)
T ss_dssp ECGGGCC--TTEEEEEEEEEEEECCCEEEC----CCEEEEEEEEEETTE---EEEEEEEGGGG-GC-CC-CTTCEEEE-E
T ss_pred eEHHHCC--CCCcEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCC---cEEEEEECCcc-cc-cc-CCCCEEEE-E
Confidence 3688887 5678999999999998765 22 54 3688899999865 39999998754 44 56 79999999 8
Q ss_pred EEEEEEcCeeeEEec
Q 012376 87 VMIKKHQAELSAVFY 101 (465)
Q Consensus 87 vki~~~~g~~~~~~~ 101 (465)
.+++.+.|.+.+...
T Consensus 74 g~v~~~~~~~el~~g 88 (97)
T 3e0e_A 74 GYVKQGYSGLEISVD 88 (97)
T ss_dssp EEEEEC--CEEEEEE
T ss_pred EEEEEcCCeEEEEEC
Confidence 899999998877665
No 17
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=97.34 E-value=0.002 Score=54.50 Aligned_cols=87 Identities=18% Similarity=0.164 Sum_probs=65.6
Q ss_pred cccccccCCc-eEeEEEEEEEEEeeC-----CCC---eEEEEEEcCCCCCCCCCCCCCCcccCCCCCCccccCCCChhcc
Q 012376 159 LSLKDISEHR-YFDLVCKVFHVSYDD-----SKG---LWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETL 229 (465)
Q Consensus 159 ~~Lkdi~~~~-f~Dlv~qVv~v~~~~-----~~~---~~~L~VwDgT~~p~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 229 (465)
..|+||+++. -+|+++.|+.+. +. .++ ...+.|-|-|
T Consensus 3 ~~I~dL~~~~~~v~~~~~V~~~~-~~~~~~~k~G~~~~~~~~l~D~T--------------------------------- 48 (119)
T 1o7i_A 3 EKVGNLKPNMESVNVTVRVLEAS-EARQIQTKNGVRTISEAIVGDET--------------------------------- 48 (119)
T ss_dssp CCGGGCCTTCSSEEEEEEEEEEC-CCEEECCTTCCEEEEEEEEEETT---------------------------------
T ss_pred EEHHHCcCCCCcEEEEEEEEECC-CCeeEEecCCCEEEEEEEEEeCC---------------------------------
Confidence 6799999986 799999999885 20 111 1222222211
Q ss_pred ccCCCcceEEEEEeccchhhhhccCCCCCcEEEEeCcEEEEeCcEEEEEEecCCceEEcCC
Q 012376 230 RNFFPVGTVLRVSTDRSYENFGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSD 290 (465)
Q Consensus 230 ~~~p~~G~vL~V~~~~~~~~~~~~~~k~G~wV~l~Nv~~k~~~g~leG~l~~~ski~~l~~ 290 (465)
|+ +++++|+..+ +.+++|+.|+++|..++...|.++..+...+.|...++
T Consensus 49 ------G~-I~~tlW~~~~----~~~~~G~vv~i~~g~v~~~~g~~qL~i~~~~~i~~~~~ 98 (119)
T 1o7i_A 49 ------GR-VKLTLWGKHA----GSIKEGQVVKIENAWTTAFKGQVQLNAGSKTKIAEASE 98 (119)
T ss_dssp ------EE-EEEEEEGGGT----TCCCTTCEEEEEEEEEEEETTEEEEEECTTCEEEECCC
T ss_pred ------CE-EEEEEECChh----hcCCCCCEEEEEeEEEEEeCCEEEEEECCCEEEEEcCC
Confidence 44 7999999765 35899999999999999999999999999999988764
No 18
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=97.33 E-value=0.004 Score=54.54 Aligned_cols=50 Identities=12% Similarity=0.104 Sum_probs=42.7
Q ss_pred EEEEEeccchhhhhccCCCCCcEEEEeCcEEEEeCcEEEEEEecCCceEEcCCC
Q 012376 238 VLRVSTDRSYENFGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDN 291 (465)
Q Consensus 238 vL~V~~~~~~~~~~~~~~k~G~wV~l~Nv~~k~~~g~leG~l~~~ski~~l~~~ 291 (465)
++++++|+..+. .+++||.|+|+|..+++..|.++..+...++|..++..
T Consensus 74 ~I~ftlW~e~~~----~l~~Gd~v~i~na~v~~~~G~~~L~vgk~g~Ie~~~e~ 123 (145)
T 1wjj_A 74 CILFTARNDQVD----LMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATGAA 123 (145)
T ss_dssp EEEEEECTTHHH----HTCTTCEEEEEEEEEEEETTEEEEEECTTCCBCCCSCC
T ss_pred EEEEEEecCCcC----cCCCCCEEEEeccEEEeECCEEEEEECCCEEEEECCCC
Confidence 679999996554 38899999999999999999999988888888776543
No 19
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=97.29 E-value=0.0045 Score=51.48 Aligned_cols=89 Identities=16% Similarity=0.215 Sum_probs=66.5
Q ss_pred cccccccC-CceEeEEEEEEEEEeeCCCCeE--EEEEEcCCCCCCCCCCCCCCcccCCCCCCccccCCCChhccccCCCc
Q 012376 159 LSLKDISE-HRYFDLVCKVFHVSYDDSKGLW--MLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPV 235 (465)
Q Consensus 159 ~~Lkdi~~-~~f~Dlv~qVv~v~~~~~~~~~--~L~VwDgT~~p~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~p~~ 235 (465)
..|+||++ +.-+|++++|+.+. +...+.. .+-|=|.|
T Consensus 6 ~kI~dl~~~~~~v~v~~~V~~~~-~~~~~~~~~~~~l~DeT--------------------------------------- 45 (109)
T 2kbn_A 6 TKIVDIVENGQWANLKAKVIQLW-ENTHESISQVGLLGDET--------------------------------------- 45 (109)
T ss_dssp CCTTTCCSTTCEEEEEEEEEEEE-ECCCSSEEEEEEEECTT---------------------------------------
T ss_pred eEHHHCCCCCCcEEEEEEEEEeE-cCCCCeEEEEEEEECCC---------------------------------------
Confidence 67999987 78899999999998 5222111 11222211
Q ss_pred ceEEEEEeccchhhhhccCCCCCcEEEEeCcEEEEeCcEEEEEEecCCceEEcCCC
Q 012376 236 GTVLRVSTDRSYENFGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDN 291 (465)
Q Consensus 236 G~vL~V~~~~~~~~~~~~~~k~G~wV~l~Nv~~k~~~g~leG~l~~~ski~~l~~~ 291 (465)
| +++.++|+.. ....+++|+.|+++|..++.+.|.++-.+...+.|..++.+
T Consensus 46 G-~I~~t~W~~~---~~~~~~~G~~V~i~n~~v~~~~G~~~L~v~~~~~I~~~~~~ 97 (109)
T 2kbn_A 46 G-IIKFTIWKNA---ELPLLEQGESYLLRSVVVGEYNDRFQVQVNKNSSIEKLSEP 97 (109)
T ss_dssp C-CEEEEEEGGG---CCCCCCTTCEEEEEEEEEEEETTEEEEEECSSSEEEECSSC
T ss_pred C-eEEEEEECcc---cccccCCCCEEEEEEEEEEEECCEEEEEECCceEEEECCCc
Confidence 2 4689999833 24579999999999999999999999999998888876643
No 20
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=97.08 E-value=0.0016 Score=56.97 Aligned_cols=89 Identities=16% Similarity=0.165 Sum_probs=67.7
Q ss_pred CCcceeehHhhhhccCC-EEEEEEEEEecCCcc---cc-C--C-------CceEEEEEEEeCCCCCCCeEEEEecCCCCC
Q 012376 6 NQGGIVRIKELAMHVKH-KVNLLGVVLEFSIPR---KS-Q--G-------TDYVCVLKIVDDSQQSPELLVNIFTSSIDQ 71 (465)
Q Consensus 6 ~~y~y~~i~~~~~~~~~-~vnviGVVvd~~~P~---~t-r--G-------~D~~~tl~I~D~s~~~~gl~v~iF~~~~~~ 71 (465)
.+-.|+.|+|+. ++. .+|+.|.|++...+. +. | | ..-.+++.|-|++=. |.+.+..+.
T Consensus 12 ~kp~~~kI~dL~--pg~~~v~l~~kVl~~~~v~~~~~~~R~dG~~~~~~r~~~V~~~lVgDeTG~---I~ftlW~e~--- 83 (145)
T 1wjj_A 12 RKPVFVKVEQLK--PGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDETGC---ILFTARNDQ--- 83 (145)
T ss_dssp CCCSSCCSTTCC--TTCCCEEEEEEEEEEEECCSSSSCCSCSSCCSSCCCCCCCEEEEEECSSCE---EEEEECTTH---
T ss_pred cCccceEHHHcC--CCCCceEEEEEEEEcccccccccccccCCccccccCCceEEEEEEEcCCcE---EEEEEecCC---
Confidence 356788999997 443 499999999988765 22 2 4 456788999998753 777777642
Q ss_pred CCCCCCCCCEEEEeeEEEEEEcCeeeEEecCC
Q 012376 72 LPRVLSPRDLILLKNVMIKKHQAELSAVFYKD 103 (465)
Q Consensus 72 LP~v~~~GDII~l~rvki~~~~g~~~~~~~~~ 103 (465)
.+.+ ..||+|+|+++.+..|+|.+.+..++.
T Consensus 84 ~~~l-~~Gd~v~i~na~v~~~~G~~~L~vgk~ 114 (145)
T 1wjj_A 84 VDLM-KPGATVILRNSRIDMFKGTMRLGVDKW 114 (145)
T ss_dssp HHHT-CTTCEEEEEEEEEEEETTEEEEEECTT
T ss_pred cCcC-CCCCEEEEeccEEEeECCEEEEEECCC
Confidence 3345 589999999999999999998877643
No 21
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A
Probab=96.77 E-value=0.11 Score=50.71 Aligned_cols=85 Identities=16% Similarity=0.078 Sum_probs=63.3
Q ss_pred ccccccccccCCceEeEEEEEEEEEe--e-C-CCCeEEEEEEcCCCCCCCCCCCCCCcccCCCCCCccccCCCChhcccc
Q 012376 156 DYLLSLKDISEHRYFDLVCKVFHVSY--D-D-SKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRN 231 (465)
Q Consensus 156 ~f~~~Lkdi~~~~f~Dlv~qVv~v~~--~-~-~~~~~~L~VwDgT~~p~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 231 (465)
+| ..|++++.++.+|+++-|+.... . . .+-..+|.++|-+.
T Consensus 5 ~y-~~l~~l~~~~~vnvigVV~~~~~p~~s~G~d~~~tl~I~D~S~---------------------------------- 49 (294)
T 1xjv_A 5 IY-TPLNQLKGGTIVNVYGVVKFFKPPYLSKGTDYCSVVTIVDQTN---------------------------------- 49 (294)
T ss_dssp CC-CCGGGCCSSEEEEEEEEEEEEEEEEECSSSSEEEEEEEECTTC----------------------------------
T ss_pred eE-EEHHHhhCCCeeEEEEEEEEcCCCccCCCCeEEEEEEEEcCCC----------------------------------
Confidence 46 78999999999999999997762 1 1 23478888888330
Q ss_pred CCCcceEEEEEeccchhhhhccCC-CCCcEEEEeCcEEEEeCcEEEEEEec
Q 012376 232 FFPVGTVLRVSTDRSYENFGRYFT-ATGKWVRIRNMSCQVSSGMWHGLLQS 281 (465)
Q Consensus 232 ~p~~G~vL~V~~~~~~~~~~~~~~-k~G~wV~l~Nv~~k~~~g~leG~l~~ 281 (465)
-| |+|.++.++.+. ...+ ++||.|+|+|++++.+.|.+.|....
T Consensus 50 ---~g--l~v~iF~~~~~~-LP~v~~~GDII~l~~vki~~~~g~~~~v~~~ 94 (294)
T 1xjv_A 50 ---VK--LTCLLFSGNYEA-LPIIYKNGDIVRFHRLKIQVYKKETQGITSS 94 (294)
T ss_dssp ---CE--EEEEEEESSGGG-SCCCCSTTCEEEEEEEEEEEETTEEEEEEEE
T ss_pred ---CC--EEEEEECCChHH-CCCCCCCCCEEEEEEEEEEEECCeEEEEccC
Confidence 02 567777666665 5556 99999999999999988888775533
No 22
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=96.69 E-value=0.018 Score=47.51 Aligned_cols=93 Identities=14% Similarity=0.056 Sum_probs=60.0
Q ss_pred cccccccccCCceEeEEEEEEEEEeeCCCCeEEEEEEcCCCCCCCCCCCCCCcccCCCCCCccccCCCChhccccCCCcc
Q 012376 157 YLLSLKDISEHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPVG 236 (465)
Q Consensus 157 f~~~Lkdi~~~~f~Dlv~qVv~v~~~~~~~~~~L~VwDgT~~p~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~p~~G 236 (465)
| ..|+||+++..+|+++.|+.+. +.. . +.=.||++-.-.. ..+.| --|
T Consensus 5 ~-~~I~dL~~~~~v~v~g~V~~~~-~~r--~--~~~~~G~~~~v~~--~~l~D------------------------~TG 52 (105)
T 3dm3_A 5 T-YNIGELSPGMTATFEGEVISAL-PIK--E--FKRADGSIGKLKS--FIVRD------------------------ETG 52 (105)
T ss_dssp E-ECGGGCCSSEEEEEEEEEEEEE-EEE--E--EECTTSCEEEEEE--EEEEE------------------------TTE
T ss_pred c-eEHHHCCCCCeEEEEEEEEECC-Cce--E--EEcCCCCeeEEEE--EEEEC------------------------CCC
Confidence 5 7899999999999999999887 310 0 0001222110000 00000 014
Q ss_pred eEEEEEeccchhhhhccCCCCCcEEEEeCcEEEEe-CcEEEEEEecCCceE
Q 012376 237 TVLRVSTDRSYENFGRYFTATGKWVRIRNMSCQVS-SGMWHGLLQSSSKIR 286 (465)
Q Consensus 237 ~vL~V~~~~~~~~~~~~~~k~G~wV~l~Nv~~k~~-~g~leG~l~~~ski~ 286 (465)
.+++++|+..+.. .+++|+.|.| |-.++.. .|-+|..+-..+.|.
T Consensus 53 -~IrvtlW~~~a~~---~l~~Gdvv~i-~g~vk~~~~g~~eL~~g~~~~i~ 98 (105)
T 3dm3_A 53 -SIRVTLWDNLTDI---DVGRGDYVRV-RGYIREGYYGGLECTANYVEILK 98 (105)
T ss_dssp -EEEEEEEGGGGGS---CCCTTCEEEE-EEEEEECTTSSEEEEEEEEEEEE
T ss_pred -cEEEEEECccccc---ccCCCCEEEE-EEEEEEccCCCEEEEeCCceEEE
Confidence 5799999977764 7999999999 8888884 567777776665554
No 23
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=96.16 E-value=0.043 Score=44.46 Aligned_cols=92 Identities=13% Similarity=0.022 Sum_probs=56.1
Q ss_pred cccccccCCceEeEEEEEEEEEeeCCCCeEEEEEEcCCCCCCCCCCCCCCcccCCCCCCccccCCCChhccccCCCcceE
Q 012376 159 LSLKDISEHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPVGTV 238 (465)
Q Consensus 159 ~~Lkdi~~~~f~Dlv~qVv~v~~~~~~~~~~L~VwDgT~~p~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~p~~G~v 238 (465)
..|+||+++..++++++|+.+. + .-...-.||++-.-.. ..+.| --| .
T Consensus 3 ~kI~dl~~g~~v~i~~~V~~~~-~----~r~~~~~~G~~~~v~~--~~l~D------------------------eTG-~ 50 (97)
T 3e0e_A 3 YKISELMPNLSGTINAEVVTAY-P----KKEFSRKDGTKGQLKS--LFLKD------------------------DTG-S 50 (97)
T ss_dssp ECGGGCCTTEEEEEEEEEEEEC-C----CEEEC----CCEEEEE--EEEEE------------------------TTE-E
T ss_pred eEHHHCCCCCcEEEEEEEEECC-C----ceEEEcCCCCeeEEEE--EEEEC------------------------CCC-c
Confidence 3699999999999999999886 2 1111112332110100 00000 013 7
Q ss_pred EEEEeccchhhhhccCCCCCcEEEEeCcEEEEeCcEEEEEEecCCceE
Q 012376 239 LRVSTDRSYENFGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIR 286 (465)
Q Consensus 239 L~V~~~~~~~~~~~~~~k~G~wV~l~Nv~~k~~~g~leG~l~~~ski~ 286 (465)
+++++|+..+.. .+++||.|.+ |=.++...|.+|..+-..+.|.
T Consensus 51 I~~tlW~~~~~~---~i~~Gdvv~i-~g~v~~~~~~~el~~g~~~~i~ 94 (97)
T 3e0e_A 51 IRGTLWNELADF---EVKKGDIAEV-SGYVKQGYSGLEISVDNIGIIE 94 (97)
T ss_dssp EEEEEEGGGGGC---CCCTTCEEEE-EEEEEEC--CEEEEEEEEEEEE
T ss_pred EEEEEECCcccc---ccCCCCEEEE-EEEEEEcCCeEEEEECCCcEEE
Confidence 899999977653 7999999999 6577776677777766665553
No 24
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=95.71 E-value=0.073 Score=44.37 Aligned_cols=55 Identities=15% Similarity=0.100 Sum_probs=45.9
Q ss_pred ceEEEEEeccchhhhhccCCCCCcEEEEeCcEEEEe-------CcEEEEEEecCCceEEcCCC
Q 012376 236 GTVLRVSTDRSYENFGRYFTATGKWVRIRNMSCQVS-------SGMWHGLLQSSSKIRLFSDN 291 (465)
Q Consensus 236 G~vL~V~~~~~~~~~~~~~~k~G~wV~l~Nv~~k~~-------~g~leG~l~~~ski~~l~~~ 291 (465)
| .+++++|...+......+++|+|+.|.|-.++.. .+-+|-.|...+.|...+++
T Consensus 51 G-~I~at~~~~~~~~f~~~l~eG~vy~Is~~~V~~a~~~y~~~~~~yei~f~~~T~I~~~~d~ 112 (114)
T 1ynx_A 51 G-EIRATAFNDFATKFNEILQEGKVYYVSKAKLQPAKPQFTNLTHPYELNLDRDTVIEECFDE 112 (114)
T ss_dssp E-EEEEEECHHHHHHHHHHSCSSSEEEEESCEEEECCTTTSSSSSCEEEEECSSCEEEESCCC
T ss_pred C-eEEEEECHHHHHHHHhhcccCcEEEECCcEEEECCCCcccCCCCEEEEECCCCEEEECCCC
Confidence 7 8899999988776578899999999999999983 34678899999988776543
No 25
>1jb7_A Telomere-binding protein alpha subunit; DNA-protein interactions, DNA HYDR sodium ION, quadruplex DNA, DNA-binding protein-DNA complex; 1.86A {Sterkiella nova} SCOP: b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1kix_A 1otc_A* 2i0q_A 1ph6_A 1ph1_A 1phj_A* 1ph3_A 1pa6_A 1ph4_A 1ph7_A 1ph8_A 1ph9_A 1ph5_A* 1ph2_A* 1k8g_A
Probab=94.90 E-value=0.65 Score=48.52 Aligned_cols=104 Identities=13% Similarity=0.057 Sum_probs=68.1
Q ss_pred ccccccccc--cCCceEeEEEEEEEEEe--eC--CCCeEEEEEEcCCCC-CCCCCCCCCCcccCCCCCCccccCCCChhc
Q 012376 156 DYLLSLKDI--SEHRYFDLVCKVFHVSY--DD--SKGLWMLFVWDGTDV-PPLSIPGKLEDEEHNPLPLHIESSPLDLET 228 (465)
Q Consensus 156 ~f~~~Lkdi--~~~~f~Dlv~qVv~v~~--~~--~~~~~~L~VwDgT~~-p~~~~~~~~~~~~~~~~p~~~~~~~l~~~~ 228 (465)
.| ..|+++ +.++.+|+++-|+.... .. .+-..+|.|+|-+-+ +... . +| +.
T Consensus 37 ~y-~~L~~a~~~~~~~VnviGVVvd~~~P~~T~G~D~~~t~tI~D~S~~~~~~~----~-----~G---------l~--- 94 (495)
T 1jb7_A 37 EY-VELAKASLTSAQPQHFYAVVIDATFPYKTNQERYICSLKIVDPTLYLKQQK----G-----AG---------DA--- 94 (495)
T ss_dssp CB-CCTTTSCSSCCSCEEEEEEEEEECCCEECSSSCEEEEEEEEBTTBSBCCTT----S-----SC---------SC---
T ss_pred cc-EEHHHHHhccCCeEEEEEEEeecCCceecCCCeEEEEEEEEeCCCCccccc----c-----cc---------cc---
Confidence 57 789988 47999999999997652 21 134889999995532 1100 0 00 10
Q ss_pred cccCCCcceEEEEEeccchhhhhccCC-CCCcEEEEeCcEEEEeCcEEEEEEecC--CceEEcC
Q 012376 229 LRNFFPVGTVLRVSTDRSYENFGRYFT-ATGKWVRIRNMSCQVSSGMWHGLLQSS--SKIRLFS 289 (465)
Q Consensus 229 ~~~~p~~G~vL~V~~~~~~~~~~~~~~-k~G~wV~l~Nv~~k~~~g~leG~l~~~--ski~~l~ 289 (465)
...+.|.+..++.+. ...+ ++||.|+|+|++++.+.|...|..... +.+.+.+
T Consensus 95 -------~~~~~v~iF~~~~e~-LP~V~~~GDII~LhrvkIq~~ng~~~~v~~~~~~SswavF~ 150 (495)
T 1jb7_A 95 -------SDYATLVLYAKRFED-LPIIHRAGDIIRVHRATLRLYNGQRQFNANVFYSSSWALFS 150 (495)
T ss_dssp -------BCCEEEEEEESSGGG-SCCCCEETCEEEEEEEEEEEETTEEEEEEETTTTCEEEEEC
T ss_pred -------cCceEEEEECCChHH-CCCCCCCCCEEEEEEEEEEEECCcEEEEecCCCceEEEEEe
Confidence 012366666665554 5566 689999999999999998888866644 4454444
No 26
>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} SCOP: b.40.4.3 PDB: 1qzh_A
Probab=94.37 E-value=0.36 Score=43.75 Aligned_cols=86 Identities=12% Similarity=0.086 Sum_probs=59.0
Q ss_pred cccccCCceEeEEEEEEEEEe--eC---C-CCeEEEEEEcCCCCCCCCCCCCCCcccCCCCCCccccCCCChhccccCCC
Q 012376 161 LKDISEHRYFDLVCKVFHVSY--DD---S-KGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFP 234 (465)
Q Consensus 161 Lkdi~~~~f~Dlv~qVv~v~~--~~---~-~~~~~L~VwDgT~~p~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~p~ 234 (465)
|.+++.++.+|+++-|+.... .. . +-..+|.++|=+= . .
T Consensus 36 l~~~~~g~~VNviGVVvd~~~P~~S~rGtkD~~~TltI~D~S~----~------------~------------------- 80 (187)
T 1qzg_A 36 QELQKKNTIVNLFGIVKDFTPSRQSLHGTKDWVTTVYLWDPTC----D------------T------------------- 80 (187)
T ss_dssp TSCCSSCEEEEEEEEEEEEEEEEECSSTTCCEEEEEEEECTTS----C------------T-------------------
T ss_pred HhhccCCCEEEEEEEEEEccCceecCCCCccEEEEEEEEeCCC----C------------C-------------------
Confidence 455688999999999987652 22 2 3478899999331 0 0
Q ss_pred cceEEEEEeccchhhhhccCC-CCCcEEEEeCcEEEEeCcEEEEEEecC
Q 012376 235 VGTVLRVSTDRSYENFGRYFT-ATGKWVRIRNMSCQVSSGMWHGLLQSS 282 (465)
Q Consensus 235 ~G~vL~V~~~~~~~~~~~~~~-k~G~wV~l~Nv~~k~~~g~leG~l~~~ 282 (465)
.+..|.|.+..+..+. ...+ ++||.|+|+|++++.+.|...|.....
T Consensus 81 ~~~gL~v~iF~~~~e~-LP~V~~~GDIIlL~rvkiq~~~g~~~~v~~~~ 128 (187)
T 1qzg_A 81 SSIGLQIHLFSKQGND-LPVIKQVGQPLLLHQITLRSYRDRTQGLSKDQ 128 (187)
T ss_dssp TSCCEEEEEEESSSSC-SCCCCSTTCEEEEEEEEEEEETTEEEEEEEEE
T ss_pred CCCceEEEEECCChhh-CCCCCCCCCEEEEEEEEEEEECCeEEEEEcCc
Confidence 0112456666555544 4555 889999999999999999888865554
No 27
>3u4z_A Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.30A {Tetrahymena thermophila}
Probab=93.93 E-value=0.53 Score=36.25 Aligned_cols=87 Identities=23% Similarity=0.221 Sum_probs=68.7
Q ss_pred ehHhhhhccCCEEEEEEEEEecCCccccCCCceEEEEEEEeCCCCCCCeEEEEecC-CCCCCCCCCCCCCEEEEeeEEEE
Q 012376 12 RIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTS-SIDQLPRVLSPRDLILLKNVMIK 90 (465)
Q Consensus 12 ~i~~~~~~~~~~vnviGVVvd~~~P~~trG~D~~~tl~I~D~s~~~~gl~v~iF~~-~~~~LP~v~~~GDII~l~rvki~ 90 (465)
-|+++++...+..++.+-|+|... +|--+.++|.|-|+.. .++|.||-+ .-|.--.. ++.---.+..+.-|
T Consensus 3 lisevlktskqylsvlaqvvdiqs------sdknirlkicdnscnq-elkvvifpdlcyewrdkf-sinkwyyfnefvrq 74 (109)
T 3u4z_A 3 LISEVLKTSKQYLSVLAQVVDIQS------SDKNIRLKICDNSCNQ-ELKVVIFPDLCYEWRDKF-SINKWYYFNEFVRQ 74 (109)
T ss_dssp CHHHHTTCCCSEEEEEEEEEEEEC------CSSCEEEEEECSSCSS-CEEEEECTTHHHHHTTTC-CTTCEEEEEEEEEE
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhc------CCCceEEEeecccccc-eeEEEEchhHHHHHHhhc-chhhhhhHHHHHHH
Confidence 367888888889999999999854 5777899999999975 499999974 22344445 67888889999999
Q ss_pred EEcCeeeEEecCCceEE
Q 012376 91 KHQAELSAVFYKDSSSF 107 (465)
Q Consensus 91 ~~~g~~~~~~~~~~ss~ 107 (465)
.||+++++-.|-. ||.
T Consensus 75 iyndevqlknnih-ssi 90 (109)
T 3u4z_A 75 IYNDEVQLKNNIH-SSI 90 (109)
T ss_dssp ESSSCEEEECCTT-CEE
T ss_pred HhhhHHhHhhhhh-hhh
Confidence 9999999887744 443
No 28
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=93.58 E-value=0.54 Score=42.34 Aligned_cols=75 Identities=11% Similarity=0.058 Sum_probs=53.1
Q ss_pred CccccHHHHhhCC----CCCcceEEEEEEEeecCCCcccc------cc--------------------CCCCeEEEEEEE
Q 012376 332 VASVTLMKIATQL----QGNVRCCCIVRVVSIHPFQAEHY------SS--------------------PNGSSEYTMKLT 381 (465)
Q Consensus 332 ~p~ttL~dIL~~p----~v~~kfr~~VRVV~~~P~~~edf------~~--------------------~~~~w~~rf~L~ 381 (465)
.+..||+||.... .-+.-|.+.+.|+.+-+.+.-=- |. ++-.|.|.+.+.
T Consensus 5 ~~~kti~qi~~~~lg~~~k~~~f~v~atI~~i~~d~~~Y~aC~~~~CnKKv~~~~~g~~~CekC~~~~~~~~~ry~l~~~ 84 (181)
T 1l1o_C 5 TNWKTLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYRCEKCDTEFPNFKYRMILSVN 84 (181)
T ss_dssp CCBCCHHHHHHHTTTSSSSCEEEEEEEEEEEECCSTTEEEBCCSTTCCCBCEEETTTEEEETTTTEEESSCCEEEEEEEE
T ss_pred cceEEHHHHhhhccCCCCCCcEEEEEEEEEEEeCCCEEECCCCchhcCCccccCCCCeEECCCCCCcCCCceEEEEEEEE
Confidence 3567899998621 22344888888887765433111 11 123678899999
Q ss_pred EeCCCceEEEEEeccccchhcCCCCC
Q 012376 382 LEDPTARIHALLCGKEWVKFFGGSPP 407 (465)
Q Consensus 382 lED~t~ri~~~v~~~da~~f~~~~~~ 407 (465)
|.|.|+.+|+.++++.|+.+|| .++
T Consensus 85 i~D~Tg~~~~t~F~~~ae~ilG-~sA 109 (181)
T 1l1o_C 85 IADFQENQWVTCFQESAEAILG-QNA 109 (181)
T ss_dssp EECSSCEEEEEEEHHHHHHHHS-SCH
T ss_pred EEeCCCCEEEEEEhHHHHHHhC-CCH
Confidence 9999999999999999999995 443
No 29
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=92.50 E-value=0.04 Score=45.99 Aligned_cols=82 Identities=11% Similarity=0.153 Sum_probs=63.4
Q ss_pred ceeehHhhhhccCC-EEEEEEEEEecCCccc---cCCCceEEEEEEEeCCCCCCCeEEEEecCCCCCC-CCCCCCCCEEE
Q 012376 9 GIVRIKELAMHVKH-KVNLLGVVLEFSIPRK---SQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQL-PRVLSPRDLIL 83 (465)
Q Consensus 9 ~y~~i~~~~~~~~~-~vnviGVVvd~~~P~~---trG~D~~~tl~I~D~s~~~~gl~v~iF~~~~~~L-P~v~~~GDII~ 83 (465)
.+++|+++. ++. ..++.|-|+....++. .+|..-.+++.|.|++- .|.+.+|.+..+.+ +.+ .+|+|+.
T Consensus 3 ~~~~Is~L~--p~~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~De~G---~I~at~~~~~~~~f~~~l-~eG~vy~ 76 (114)
T 1ynx_A 3 PIFAIEQLS--PYQNVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFLDTSG---EIRATAFNDFATKFNEIL-QEGKVYY 76 (114)
T ss_dssp CBCCGGGCC--TTTCCCEEEEEEEEEEEEEEEECSSCEEEEEEEEEEETTE---EEEEEECHHHHHHHHHHS-CSSSEEE
T ss_pred ceEEHHHCC--CCCCceEEEEEEEEeccceEEecCCCCceEEEEEEECCCC---eEEEEECHHHHHHHHhhc-ccCcEEE
Confidence 578999997 443 4899999998776532 25667889999999974 49999998755544 445 7999999
Q ss_pred EeeEEEEEEcCee
Q 012376 84 LKNVMIKKHQAEL 96 (465)
Q Consensus 84 l~rvki~~~~g~~ 96 (465)
+.+.+|+.-+++.
T Consensus 77 Is~~~V~~a~~~y 89 (114)
T 1ynx_A 77 VSKAKLQPAKPQF 89 (114)
T ss_dssp EESCEEEECCTTT
T ss_pred ECCcEEEECCCCc
Confidence 9999999865553
No 30
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=92.40 E-value=0.93 Score=38.68 Aligned_cols=69 Identities=13% Similarity=0.121 Sum_probs=50.5
Q ss_pred CEEEEEEEEEecCCccccCCCceEEEEEEEeCCCCCCCeEEEEecCCCC----CCCCCCCCCCEEEEeeEEEEEEcCeee
Q 012376 22 HKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSID----QLPRVLSPRDLILLKNVMIKKHQAELS 97 (465)
Q Consensus 22 ~~vnviGVVvd~~~P~~trG~D~~~tl~I~D~s~~~~gl~v~iF~~~~~----~LP~v~~~GDII~l~rvki~~~~g~~~ 97 (465)
..|.++|+|.+... + .=.++++|-|.+- .|.++++-...+ ..+.+ .+|++|++..- ++.|+|+.+
T Consensus 37 ~~V~iVG~V~~~~~-----~-~~~~~~~ldD~TG---~I~~~~W~~~~~~~~~~~~~~-~~g~yVrV~G~-v~~f~g~~q 105 (136)
T 4gop_B 37 GQLTFVAVVRNISR-----N-ATNVAYSVEDGTG---QIEVRQWLDSSSDDSSKASEI-RNNVYVRVLGT-LKSFQNRRS 105 (136)
T ss_dssp CEEEEEEEEEEEEE-----C-SSEEEEEEECSSC---EEEEEEECC--------CCSC-CTTCEEEEEEE-EEEETTEEE
T ss_pred EEEEEEEEEEEEEe-----c-CCeEEEEEECCCC---CEEEEEecccCCccccccccc-CCCCEEEEEEE-EEEeCCEEE
Confidence 35899999999853 1 2367888988765 399999975443 46777 68999999665 899999977
Q ss_pred EEec
Q 012376 98 AVFY 101 (465)
Q Consensus 98 ~~~~ 101 (465)
....
T Consensus 106 i~~~ 109 (136)
T 4gop_B 106 ISSG 109 (136)
T ss_dssp EEES
T ss_pred EEEE
Confidence 6553
No 31
>1miu_A BRCA2, breast cancer type 2 susceptibility protein; tumor suppressor, breast cancer susceptibility, DNA-binding; 3.10A {Mus musculus} SCOP: a.170.1.1 a.171.1.1 b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1iyj_B 1mje_A
Probab=91.85 E-value=1.4 Score=47.71 Aligned_cols=152 Identities=17% Similarity=0.195 Sum_probs=95.6
Q ss_pred eEEEEEEEeCCCCCCCeEEEEecCCCCCCCCCCCCCCEEEEeeEEEEEEcCe-----eeEEecCCceEEEEEeCCCCCCC
Q 012376 44 YVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILLKNVMIKKHQAE-----LSAVFYKDSSSFALFDGNSGSNL 118 (465)
Q Consensus 44 ~~~tl~I~D~s~~~~gl~v~iF~~~~~~LP~v~~~GDII~l~rvki~~~~g~-----~~~~~~~~~ss~~lf~~~~~~~~ 118 (465)
=..+++|+|-.-.....-++|-+++.+ +......|.+.++.++.....++. +++.+.+ .|.|---+.... .+
T Consensus 511 p~~klRV~d~~~~~k~~iLSIW~P~ed-l~s~L~EG~~y~iy~L~~s~s~~~~~~~~lqLtAtk-~T~~~~L~~~~~-~~ 587 (738)
T 1miu_A 511 TVWKLRVTSYKKKEKSALLSIWRPSSD-LSSLLTEGKRYRIYHLAVSKSKSKFERPSIQLTATK-RTQYQQLPVSSE-TL 587 (738)
T ss_dssp CEEEEEEEESSSSCCCEEEEEESCCHH-HHHHCCSSCEEEEEEECCCCCCCSSSCCSCEEEEEE-EEEEEEECCCHH-HH
T ss_pred eeEEEEEEeccCCCceEEEEEeCCChH-HHhhccCCcEEEEEEeeccCCCccCccceEEEeecc-cceeEECCcchh-hh
Confidence 467788888554445688899998655 444347899999999988766542 4555543 366653332110 00
Q ss_pred CccccCCCCCCCCHHHHHHHHHHHHhhhcCcccCCCccccccccc---ccCCceEeEEEEEEEEEeeCCCCeEEEEEEcC
Q 012376 119 LPYQSSPQRFEITEAEERRINVLRQWCVGFEFSSGSNDYLLSLKD---ISEHRYFDLVCKVFHVSYDDSKGLWMLFVWDG 195 (465)
Q Consensus 119 ~Py~~s~~~~~~~~~e~~~v~~Lr~W~~~~~~~~~~~~f~~~Lkd---i~~~~f~Dlv~qVv~v~~~~~~~~~~L~VwDg 195 (465)
.+ .|++. ... .| ..|.+ ....+.||++|-||.|- ...+..-.+|+.|+
T Consensus 588 ~~------~~~pR-------------------~~~--~~-~~l~~~~f~p~~~EvDivG~Vv~v~-~~~~~~~~vylsD~ 638 (738)
T 1miu_A 588 LQ------VYQPR-------------------ESL--HF-SRLSDPAFQPPCSEVDVVGVVVSVV-KPIGLAPLVYLSDE 638 (738)
T ss_dssp TT------TCCCC-------------------CBC--CS-GGGGSSSCCTTTTEEEEEEEEEEEE-CCTTSCCEEEEECS
T ss_pred cc------ccCCc-------------------cee--eH-HHhcCccccCCCCceeEEEEEEEEc-ccCcccceEEEEcC
Confidence 00 01111 001 23 44444 45689999999999997 43445668888885
Q ss_pred CCCCCCCCCCCCCcccCCCCCCccccCCCChhccccCCCcceEEEEEeccchhhhhccCCCCCcEEEEeCcEEEE
Q 012376 196 TDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPVGTVLRVSTDRSYENFGRYFTATGKWVRIRNMSCQV 270 (465)
Q Consensus 196 T~~p~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~p~~G~vL~V~~~~~~~~~~~~~~k~G~wV~l~Nv~~k~ 270 (465)
.-| .|-|.+|..-. -+ +++|..|.+.|++.+.
T Consensus 639 ~~n---------------------------------------ll~Ikf~~~l~---eD-~~~~~~va~sNL~~r~ 670 (738)
T 1miu_A 639 CLN---------------------------------------LLVVKFGIDLN---ED-IKPRVLIAASNLQCQP 670 (738)
T ss_dssp SSC---------------------------------------EEEEEESSCCC---SC-CCSSCEEEEEEEECCS
T ss_pred CCc---------------------------------------EEEEEEecCch---hh-CccccEEEEeeeEeec
Confidence 411 13466676544 23 9999999999999887
No 32
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=91.66 E-value=1.4 Score=37.29 Aligned_cols=69 Identities=19% Similarity=0.228 Sum_probs=48.7
Q ss_pred CEEEEEEEEEecCCccccCCCceEEEEEEEeCCCCCCCeEEEEecCCCC---CCCCCCCCCCEEEEeeEEEEEEcCeeeE
Q 012376 22 HKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSID---QLPRVLSPRDLILLKNVMIKKHQAELSA 98 (465)
Q Consensus 22 ~~vnviGVVvd~~~P~~trG~D~~~tl~I~D~s~~~~gl~v~iF~~~~~---~LP~v~~~GDII~l~rvki~~~~g~~~~ 98 (465)
..|.+.|+|.+... .+-.++++|-|.+-. .|.++++....+ ....+ ..||.|++..- ++.|+|+.+.
T Consensus 32 ~~V~iVG~V~~~~~------~~~~~~~~ldD~TG~--~I~~~~W~~~~~~~~~~~~~-~~g~yVrV~G~-l~~f~g~~qi 101 (132)
T 3kdf_D 32 SQVTIVGIIRHAEK------APTNIVYKIDDMTAA--PMDVRQWVDTDDTSSENTVV-PPETYVKVAGH-LRSFQNKKSL 101 (132)
T ss_dssp CEEEEEEEEEEEEE------CSSEEEEEEECSSSS--CEEEEEEC---------CCC-CTTCEEEEEEE-EEEETTEEEE
T ss_pred EEEEEEEEEEEEEE------cCCeEEEEEECCCCC--EEEEEEEccCCCcccccccc-cCCCEEEEEEE-EEeECCEEEE
Confidence 35899999999853 234678889997641 399999976432 25556 68999999765 8899999776
Q ss_pred Ee
Q 012376 99 VF 100 (465)
Q Consensus 99 ~~ 100 (465)
..
T Consensus 102 ~~ 103 (132)
T 3kdf_D 102 VA 103 (132)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 33
>3ebe_A Protein MCM10 homolog; OB-fold, zinc finger, CCCH, DNA replication, metal-binding, zinc-finger, replication; 2.30A {Xenopus laevis} PDB: 3h15_A
Probab=91.32 E-value=0.2 Score=46.10 Aligned_cols=82 Identities=15% Similarity=0.217 Sum_probs=57.8
Q ss_pred CcceeehHhhhhc--c----CCEEEEEEEEEecCCccccC-CCceEEEEEEEeCCCCCCCeEEEEecCCCCCCCCCCCCC
Q 012376 7 QGGIVRIKELAMH--V----KHKVNLLGVVLEFSIPRKSQ-GTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPR 79 (465)
Q Consensus 7 ~y~y~~i~~~~~~--~----~~~vnviGVVvd~~~P~~tr-G~D~~~tl~I~D~s~~~~gl~v~iF~~~~~~LP~v~~~G 79 (465)
...|++|.+++.. . ....-++|||++-..|+.+. |+.| +..+|.|-.-....+.+-+|.+..+.+=.+ .+|
T Consensus 35 ~~k~~~l~~L~~~v~~~~~~e~dwv~~GVV~~Ks~pk~~~~gk~y-~~w~l~DL~~~~~~V~lfLFg~a~~~~~k~-~~G 112 (200)
T 3ebe_A 35 GRKLIRLAQLQNKIATEKLEEEDWVTFGVIVKKITPQSSNNGKTF-SIWRLNDLKDLDKYISLFLFGDVHKEHWKT-DQG 112 (200)
T ss_dssp TCEECCGGGHHHHHHTTCSTTSCEEEEEEEEEEECC-------CC-EEEEEECSSSTTCCEEEEECHHHHHHHTTC-CTT
T ss_pred CCeEEeHHHHHhhccCCCCCcCCEEEEEEEEecCCccCcCCCCeE-EEEEEEecCCCCcEEEEEEechHHHHhcCc-CCc
Confidence 3578888888752 1 23566999999999998874 5555 568898876655569999998755556677 699
Q ss_pred CEEEEeeEEEE
Q 012376 80 DLILLKNVMIK 90 (465)
Q Consensus 80 DII~l~rvki~ 90 (465)
+||-|-|-.+-
T Consensus 113 ~ViaiLNP~i~ 123 (200)
T 3ebe_A 113 TVIGLLNANPM 123 (200)
T ss_dssp EEEEEESCEEC
T ss_pred eEEEEECCEEc
Confidence 99999999874
No 34
>3u58_A Tetrahymena TEB1 AB; tetrahymena, telomerase, TEB1, processivity factor, DNA BIND protein-DNA complex; HET: DNA; 2.61A {Tetrahymena thermophila}
Probab=90.59 E-value=1.8 Score=36.83 Aligned_cols=85 Identities=21% Similarity=0.212 Sum_probs=68.8
Q ss_pred eehHhhhhccCCEEEEEEEEEecCCccccCCCceEEEEEEEeCCCCCCCeEEEEecC-CCCCCCCCCCCCCEEEEeeEEE
Q 012376 11 VRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTS-SIDQLPRVLSPRDLILLKNVMI 89 (465)
Q Consensus 11 ~~i~~~~~~~~~~vnviGVVvd~~~P~~trG~D~~~tl~I~D~s~~~~gl~v~iF~~-~~~~LP~v~~~GDII~l~rvki 89 (465)
.-|+++++...+..+|.+-|+|... +|--+.++|.|-|+.. .++|.||-+ .-|.--.. ++.---.+....-
T Consensus 120 llisevlktskqylsvlaqvvdiqs------sdknirlkicdnscnq-elkvvifpdlcyewrdkf-sinkwyyfnefvr 191 (213)
T 3u58_A 120 LLISEVLKTSKQYLSVLAQVVDIQS------SDKNIRLKICDNSCNQ-ELKVVIFPDLCYEWRDKF-SINKWYYFNEFVR 191 (213)
T ss_dssp BCHHHHTTCCCSEEEEEEEEEEEEE------CSSCEEEEEECTTCSC-CEEEEECTTTTGGGTTCC-CTTCEEEEEEEEE
T ss_pred eehHHHHHHhHHHHHHHHHhhcccc------CCCceEEEeecccccc-eeEEEEchhHhhHhhhhc-chhhhhhHHHHHH
Confidence 4578888888889999999999854 5777899999999975 499999975 33555555 7888888988989
Q ss_pred EEEcCeeeEEecCC
Q 012376 90 KKHQAELSAVFYKD 103 (465)
Q Consensus 90 ~~~~g~~~~~~~~~ 103 (465)
|.||+++++-.|-.
T Consensus 192 qiyndevqlknnih 205 (213)
T 3u58_A 192 QIYNDEVQLKNNIH 205 (213)
T ss_dssp CCSSSSCEEECCTT
T ss_pred HHhhhhhhhhhhhh
Confidence 99999998877643
No 35
>4hik_A Protection of telomeres protein 1; specificity, plasticity, promiscuity, OB-fold, ssDNA binding stranded telomeric DNA; HET: DNA; 1.64A {Schizosaccharomyces pombe} PDB: 4hid_A* 4him_A* 4hio_A* 4hj5_A* 4hj7_A* 4hj8_A* 4hj9_A* 4hja_A*
Probab=89.52 E-value=0.58 Score=40.58 Aligned_cols=77 Identities=10% Similarity=0.126 Sum_probs=56.1
Q ss_pred ceeehHhhhhccCCEEEEEEEEEecCCccccCCCceEEEEEEEeCCCC--------------CC------CeEEEEecCC
Q 012376 9 GIVRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQ--------------SP------ELLVNIFTSS 68 (465)
Q Consensus 9 ~y~~i~~~~~~~~~~vnviGVVvd~~~P~~trG~D~~~tl~I~D~s~~--------------~~------gl~v~iF~~~ 68 (465)
+|.-|+|+. .++.++++|=|+..- . .+ -.++|.++|=+.. |. .|.|.+|-++
T Consensus 4 kf~llkdv~--~~~F~Dl~~qVv~~~--~--~~--~~~~LyVTDYT~N~~~~~~~~~~~~~~W~Gp~G~~tlqVtlwd~h 75 (143)
T 4hik_A 4 SFSLLSQIT--PHQRCSFYAQVIKTW--Y--SD--KNFTLYVTDYTENELFFPMSPYTSSSRWRGPFGRFSIRCILWDEH 75 (143)
T ss_dssp CCCCGGGCC--SSCEEEEEEEEEEEE--E--CS--SCEEEEEECSCCCTTSCCBCTTCTTCSCCCCCBSCCEEEEECHHH
T ss_pred hhhhHHhCC--CCCeEEEEEEEEEEE--c--CC--CeEEEEEecCCCCCcccccccCCCCccccCCCCcEEEEEEEECcH
Confidence 466788887 889999999999832 1 22 5688889985543 11 2899998765
Q ss_pred CCCCCC-CCCCCCEEEEeeEEEEEEcC
Q 012376 69 IDQLPR-VLSPRDLILLKNVMIKKHQA 94 (465)
Q Consensus 69 ~~~LP~-v~~~GDII~l~rvki~~~~g 94 (465)
.+..=. + .+||.|+|+||+|+.-.+
T Consensus 76 a~~ar~~l-k~Gd~v~L~Nv~iK~~~~ 101 (143)
T 4hik_A 76 DFYCRNYI-KEGDYVVMKNVRTKIDHL 101 (143)
T ss_dssp HHHHTTTC-CTTCEEEEEEEEEEECTT
T ss_pred HHHHHhhC-CCCCEEEEEeEEEeecCC
Confidence 433333 5 689999999999987743
No 36
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=87.70 E-value=3.3 Score=39.54 Aligned_cols=81 Identities=19% Similarity=0.249 Sum_probs=55.8
Q ss_pred eehHhhhhcc--C----------CEEEEEEEEEecCCccccCCCceEEEEEEEeCCCCCCCeEEEEecCCCC---CCCCC
Q 012376 11 VRIKELAMHV--K----------HKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSID---QLPRV 75 (465)
Q Consensus 11 ~~i~~~~~~~--~----------~~vnviGVVvd~~~P~~trG~D~~~tl~I~D~s~~~~gl~v~iF~~~~~---~LP~v 75 (465)
+.|+++++.. + ..|.++|+|++... ++ =.++++|-|.+-. -|.++++....+ ....+
T Consensus 49 vtIkqil~a~~~d~~f~i~g~~i~~V~ivG~V~~i~~-----~~-~~~~~~L~D~TG~--~I~~k~W~~~~~~~~~~~~~ 120 (270)
T 2pi2_A 49 CTISQLLSATLVDEVFRIGNVEISQVTIVGIIRHAEK-----AP-TNIVYKIDDMTAA--PMDVRQWVDTDDTSSENTVV 120 (270)
T ss_dssp CCHHHHHHCEEETTEEEETTEEESEEEEEEEEEEEEE-----CS-SEEEEEEECSSSS--CEEEEEECC-------CCCC
T ss_pred EEHHHHhcCccCCCcEEECCEEEEEEEEEEEEEEEEe-----cc-ceEEEEEECCCCC--EEEEEEEcCcCcccchhhcC
Confidence 5677777631 1 25889999999743 22 3568889997631 299999975432 34456
Q ss_pred CCCCCEEEEeeEEEEEEcCeeeEEec
Q 012376 76 LSPRDLILLKNVMIKKHQAELSAVFY 101 (465)
Q Consensus 76 ~~~GDII~l~rvki~~~~g~~~~~~~ 101 (465)
..|++|+++. +++.|+|+.++...
T Consensus 121 -~~G~yVrV~G-~v~~f~g~~qi~i~ 144 (270)
T 2pi2_A 121 -PPETYVKVAG-HLRSFQNKKSLVAF 144 (270)
T ss_dssp -CTTCEEEEEE-EEEEETTEEEEEEE
T ss_pred -CCCCEEEEEE-EEEecCCeeEEEEE
Confidence 6899999975 88899999877654
No 37
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=83.73 E-value=0.36 Score=43.27 Aligned_cols=33 Identities=9% Similarity=0.220 Sum_probs=30.4
Q ss_pred CCeEEEEEEEEeCCCceEEEEEeccccchhcCC
Q 012376 372 GSSEYTMKLTLEDPTARIHALLCGKEWVKFFGG 404 (465)
Q Consensus 372 ~~w~~rf~L~lED~t~ri~~~v~~~da~~f~~~ 404 (465)
-.|.|.+.+.|.|.|+.+|+.++++.|+.|||.
T Consensus 71 ~~~RYil~~~i~D~TG~~wvt~F~e~ae~ilG~ 103 (172)
T 3u50_C 71 PQVHLMLRAFVQDSTGTIPVMIFDQQSSQLINQ 103 (172)
T ss_dssp CEEEECEEEEEEETTEEEEEEECHHHHHHHHHH
T ss_pred ceEEEEEEEEEEeCCCCEEEEEEhHHHHHHhCC
Confidence 357888999999999999999999999999976
No 38
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=73.91 E-value=34 Score=28.68 Aligned_cols=81 Identities=16% Similarity=0.024 Sum_probs=51.3
Q ss_pred CCceEeEEEEEEEEEeeCCCCeEEEEEEcCCCCCCCCCCCCCCcccCCCCCCccccCCCChhccccCCCcceEEEEEecc
Q 012376 166 EHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPVGTVLRVSTDR 245 (465)
Q Consensus 166 ~~~f~Dlv~qVv~v~~~~~~~~~~L~VwDgT~~p~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~p~~G~vL~V~~~~ 245 (465)
+=..+.+++.|+.+. + ......+.+-|||+. |.+.+|.
T Consensus 35 ~i~~V~iVG~V~~~~-~-~~~~~~~~ldD~TG~----------------------------------------I~~~~W~ 72 (136)
T 4gop_B 35 ELGQLTFVAVVRNIS-R-NATNVAYSVEDGTGQ----------------------------------------IEVRQWL 72 (136)
T ss_dssp BCCEEEEEEEEEEEE-E-CSSEEEEEEECSSCE----------------------------------------EEEEEEC
T ss_pred EEEEEEEEEEEEEEE-e-cCCeEEEEEECCCCC----------------------------------------EEEEEec
Confidence 446789999999997 5 567888999998851 2345555
Q ss_pred chhhh---hccCCCCCcEEEEeCcEEEEeCcEEEEEEecCCceEEcCCCC
Q 012376 246 SYENF---GRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDND 292 (465)
Q Consensus 246 ~~~~~---~~~~~k~G~wV~l~Nv~~k~~~g~leG~l~~~ski~~l~~~d 292 (465)
..+.. -...+++|++|+...- ++...|..+... .+|+.+.+.+
T Consensus 73 ~~~~~~~~~~~~~~~g~yVrV~G~-v~~f~g~~qi~~---~~ir~v~d~N 118 (136)
T 4gop_B 73 DSSSDDSSKASEIRNNVYVRVLGT-LKSFQNRRSISS---GHMRPVIDYN 118 (136)
T ss_dssp C--------CCSCCTTCEEEEEEE-EEEETTEEEEEE---SEEEECSSHH
T ss_pred ccCCcccccccccCCCCEEEEEEE-EEEeCCEEEEEE---EEEEECCCcc
Confidence 33321 1456899999988765 455566543322 3566655433
No 39
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=72.53 E-value=27 Score=29.12 Aligned_cols=81 Identities=11% Similarity=0.019 Sum_probs=49.9
Q ss_pred ceEeEEEEEEEEEeeCCCCeEEEEEEcCCCCCCCCCCCCCCcccCCCCCCccccCCCChhccccCCCcceEEEEEeccch
Q 012376 168 RYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPVGTVLRVSTDRSY 247 (465)
Q Consensus 168 ~f~Dlv~qVv~v~~~~~~~~~~L~VwDgT~~p~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~p~~G~vL~V~~~~~~ 247 (465)
+.+.+++.|+.+. + ....+.+.+-|||++ .|.+..|...
T Consensus 32 ~~V~iVG~V~~~~-~-~~~~~~~~ldD~TG~---------------------------------------~I~~~~W~~~ 70 (132)
T 3kdf_D 32 SQVTIVGIIRHAE-K-APTNIVYKIDDMTAA---------------------------------------PMDVRQWVDT 70 (132)
T ss_dssp CEEEEEEEEEEEE-E-CSSEEEEEEECSSSS---------------------------------------CEEEEEEC--
T ss_pred EEEEEEEEEEEEE-E-cCCeEEEEEECCCCC---------------------------------------EEEEEEEccC
Confidence 5689999999997 5 568899999999962 1123344322
Q ss_pred hh--hhccCCCCCcEEEEeCcEEEEeCcEEEEEEecCCceEEcCCCCh
Q 012376 248 EN--FGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDNDN 293 (465)
Q Consensus 248 ~~--~~~~~~k~G~wV~l~Nv~~k~~~g~leG~l~~~ski~~l~~~d~ 293 (465)
+. .....+++|++|+...- ++...|..+... .+|+.+++.+.
T Consensus 71 ~~~~~~~~~~~~g~yVrV~G~-l~~f~g~~qi~~---~~ir~v~d~Ne 114 (132)
T 3kdf_D 71 DDTSSENTVVPPETYVKVAGH-LRSFQNKKSLVA---FKIMPLEDMNE 114 (132)
T ss_dssp -------CCCCTTCEEEEEEE-EEEETTEEEEEE---EEEEECSSTHH
T ss_pred CCcccccccccCCCEEEEEEE-EEeECCEEEEEE---EEEEEcCCccH
Confidence 21 11356899999988764 455566554322 35666655443
No 40
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}
Probab=66.49 E-value=65 Score=28.00 Aligned_cols=29 Identities=21% Similarity=0.224 Sum_probs=23.0
Q ss_pred CceEeEEEEEEEEEeeCCCCeEEEEEEcCCC
Q 012376 167 HRYFDLVCKVFHVSYDDSKGLWMLFVWDGTD 197 (465)
Q Consensus 167 ~~f~Dlv~qVv~v~~~~~~~~~~L~VwDgT~ 197 (465)
=+++++++.|+++. + ...+..+-|=|||+
T Consensus 47 I~~V~IvGiVv~~~-~-~~~~~~ytIDD~TG 75 (159)
T 3kf6_A 47 IRWIQIVGYIAAID-I-YEGKHVLTVDDCSG 75 (159)
T ss_dssp ECEEEEEEEEEEEE-E-ETTEEEEEEECSSS
T ss_pred EEEEEEEEEEEEEE-E-eCCEEEEEEecCCC
Confidence 36789999999998 4 45677777888884
No 41
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=64.69 E-value=94 Score=29.20 Aligned_cols=81 Identities=11% Similarity=0.024 Sum_probs=51.9
Q ss_pred ceEeEEEEEEEEEeeCCCCeEEEEEEcCCCCCCCCCCCCCCcccCCCCCCccccCCCChhccccCCCcceEEEEEeccch
Q 012376 168 RYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPVGTVLRVSTDRSY 247 (465)
Q Consensus 168 ~f~Dlv~qVv~v~~~~~~~~~~L~VwDgT~~p~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~p~~G~vL~V~~~~~~ 247 (465)
..+.+++.|.++. . ....+.+.+-|+|+. .|.+.+|...
T Consensus 72 ~~V~ivG~V~~i~-~-~~~~~~~~L~D~TG~---------------------------------------~I~~k~W~~~ 110 (270)
T 2pi2_A 72 SQVTIVGIIRHAE-K-APTNIVYKIDDMTAA---------------------------------------PMDVRQWVDT 110 (270)
T ss_dssp SEEEEEEEEEEEE-E-CSSEEEEEEECSSSS---------------------------------------CEEEEEECC-
T ss_pred EEEEEEEEEEEEE-e-ccceEEEEEECCCCC---------------------------------------EEEEEEEcCc
Confidence 5789999999997 5 568888999998851 1234555433
Q ss_pred hh--hhccCCCCCcEEEEeCcEEEEeCcEEEEEEecCCceEEcCCCCh
Q 012376 248 EN--FGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDNDN 293 (465)
Q Consensus 248 ~~--~~~~~~k~G~wV~l~Nv~~k~~~g~leG~l~~~ski~~l~~~d~ 293 (465)
+. .....+++|++|++.- +++...|..+.... +|+.+.+.+.
T Consensus 111 ~~~~~~~~~~~~G~yVrV~G-~v~~f~g~~qi~i~---~ir~v~d~nE 154 (270)
T 2pi2_A 111 DDTSSENTVVPPETYVKVAG-HLRSFQNKKSLVAF---KIMPLEDMNE 154 (270)
T ss_dssp ------CCCCCTTCEEEEEE-EEEEETTEEEEEEE---EEEECSCTHH
T ss_pred CcccchhhcCCCCCEEEEEE-EEEecCCeeEEEEE---EEEecCCHhH
Confidence 21 1235689999998876 45556666554332 5666665444
No 42
>3r8s_P 50S ribosomal protein L19; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* 2qba_P* 2qbc_P* 2qbe_P 2qbg_P 2qbi_P* 2qbk_P* 2qov_P 2qox_P 2qoz_P* 2qp1_P* ...
Probab=59.37 E-value=18 Score=29.81 Aligned_cols=41 Identities=17% Similarity=0.312 Sum_probs=28.4
Q ss_pred CCCCCCCCCCCEEEEee-------EEEEEEcCeeeEEecCC-ceEEEEEe
Q 012376 70 DQLPRVLSPRDLILLKN-------VMIKKHQAELSAVFYKD-SSSFALFD 111 (465)
Q Consensus 70 ~~LP~v~~~GDII~l~r-------vki~~~~g~~~~~~~~~-~ss~~lf~ 111 (465)
.++|.+ .+||+|.+|= =++|.|.|-+.+.-+.+ .++|.|=+
T Consensus 14 ~~iP~f-~~GDtv~V~~~i~EG~keRiQ~F~GvvI~~~~~G~~~tftvRk 62 (114)
T 3r8s_P 14 QDVPSF-RPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRK 62 (114)
T ss_dssp SCCCCC-CTTCEEEEEEEEEETTEEEEEEEEEEEEEEECCGGGCEEEEEE
T ss_pred cCCCcc-CCCCEEEEEEEEecCCceeeeeEEEEEEEEECCCCCeEEEEEE
Confidence 579999 7999999973 24677877766655433 35677643
No 43
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}
Probab=58.94 E-value=13 Score=32.62 Aligned_cols=71 Identities=17% Similarity=0.189 Sum_probs=46.5
Q ss_pred CEEEEEEEEEecCCccccCCCceEEEEEEEeCCCCCCCeEEEEecCCCC---CCCCCCCCCCEEEEeeEEEEEEcCeeeE
Q 012376 22 HKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSID---QLPRVLSPRDLILLKNVMIKKHQAELSA 98 (465)
Q Consensus 22 ~~vnviGVVvd~~~P~~trG~D~~~tl~I~D~s~~~~gl~v~iF~~~~~---~LP~v~~~GDII~l~rvki~~~~g~~~~ 98 (465)
.+|.+.|+|+.... +.+ ...++|=|.|- .-|.|.++-+... .+.....+|++|+++. .|+.|+|+.+.
T Consensus 48 ~~V~IvGiVv~~~~-~~~-----~~~ytIDD~TG--~~I~cv~w~~~~~~~~~~~~~l~~G~~VrV~G-~v~~fr~~rqI 118 (159)
T 3kf6_A 48 RWIQIVGYIAAIDI-YEG-----KHVLTVDDCSG--MVLRVVFIIQDDFSMSKRAISMSPGNVVCVFG-KINSFRSEVEL 118 (159)
T ss_dssp CEEEEEEEEEEEEE-ETT-----EEEEEEECSSS--CEEEEEEEGGGCHHHHHHHTTCCTTCEEEEEE-EEECSSSSCEE
T ss_pred EEEEEEEEEEEEEE-eCC-----EEEEEEecCCC--CeEEEEEEccCCCCcccccccCCCCCEEEEEE-EEEeeCCEEEE
Confidence 36899999999863 111 25666666652 2389999875411 1122236899999955 67888888776
Q ss_pred Eec
Q 012376 99 VFY 101 (465)
Q Consensus 99 ~~~ 101 (465)
...
T Consensus 119 ~~~ 121 (159)
T 3kf6_A 119 IAQ 121 (159)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 44
>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=57.15 E-value=17 Score=29.17 Aligned_cols=43 Identities=12% Similarity=0.128 Sum_probs=27.1
Q ss_pred CCCCCCCCCEEEEeeE------EEEEEcCeeeEEecCC-ceEEEEEeCCCC
Q 012376 72 LPRVLSPRDLILLKNV------MIKKHQAELSAVFYKD-SSSFALFDGNSG 115 (465)
Q Consensus 72 LP~v~~~GDII~l~rv------ki~~~~g~~~~~~~~~-~ss~~lf~~~~~ 115 (465)
+|.+ .+||+|.+|=- ++|.|.|-+.+.-+.+ .++|.|=+-..+
T Consensus 1 iP~f-~~GDtv~V~~~i~g~k~R~q~F~GvvI~~~~~G~~~tftvRki~~g 50 (98)
T 2ftc_K 1 IPEF-YVGSILRVTTADPYASGKISQFLGICIQRSGRGLGATFILRNVIEG 50 (98)
T ss_pred CCcc-CCCCEEEEEEEECCCceEeeeEEEEEEEEECCCCCcEEEEEEeccC
Confidence 5888 79999999821 2466766655554433 356776554433
No 45
>1miu_A BRCA2, breast cancer type 2 susceptibility protein; tumor suppressor, breast cancer susceptibility, DNA-binding; 3.10A {Mus musculus} SCOP: a.170.1.1 a.171.1.1 b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1iyj_B 1mje_A
Probab=54.89 E-value=31 Score=37.45 Aligned_cols=71 Identities=21% Similarity=0.308 Sum_probs=50.3
Q ss_pred ehHhhhh----ccCCEEEEEEEEEecCCccccCCCceEEEEEEEeCCCCCCCeEEEEecCCCCCCCCCCCCCCEEEEeeE
Q 012376 12 RIKELAM----HVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILLKNV 87 (465)
Q Consensus 12 ~i~~~~~----~~~~~vnviGVVvd~~~P~~trG~D~~~tl~I~D~s~~~~gl~v~iF~~~~~~LP~v~~~GDII~l~rv 87 (465)
++.++.. .+..-|+++|+|+...... | ..-.+-|.|.+..- +.|+++..-.++ + .+|.+|-+.|+
T Consensus 598 ~~~~l~~~~f~p~~~EvDivG~Vv~v~~~~---~--~~~~vylsD~~~nl--l~Ikf~~~l~eD---~-~~~~~va~sNL 666 (738)
T 1miu_A 598 HFSRLSDPAFQPPCSEVDVVGVVVSVVKPI---G--LAPLVYLSDECLNL--LVVKFGIDLNED---I-KPRVLIAASNL 666 (738)
T ss_dssp CSGGGGSSSCCTTTTEEEEEEEEEEEECCT---T--SCCEEEEECSSSCE--EEEEESSCCCSC---C-CSSCEEEEEEE
T ss_pred eHHHhcCccccCCCCceeEEEEEEEEcccC---c--ccceEEEEcCCCcE--EEEEEecCchhh---C-ccccEEEEeee
Confidence 4455543 3567799999999996532 1 12256689998743 777777765565 6 69999999999
Q ss_pred EEEEEc
Q 012376 88 MIKKHQ 93 (465)
Q Consensus 88 ki~~~~ 93 (465)
+.+...
T Consensus 667 ~~r~~~ 672 (738)
T 1miu_A 667 QCQPES 672 (738)
T ss_dssp ECCSCC
T ss_pred Eeeccc
Confidence 998654
No 46
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=50.67 E-value=20 Score=40.63 Aligned_cols=84 Identities=15% Similarity=0.289 Sum_probs=60.0
Q ss_pred ceeehHhhhhccCCEEEEEEEEEecCCccccCCCceEEEEEEEeCCCCCCCeEEEEecCCCCC---CCCCCCCCCEEEEe
Q 012376 9 GIVRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQ---LPRVLSPRDLILLK 85 (465)
Q Consensus 9 ~y~~i~~~~~~~~~~vnviGVVvd~~~P~~trG~D~~~tl~I~D~s~~~~gl~v~iF~~~~~~---LP~v~~~GDII~l~ 85 (465)
..++|.++.... ..|-+-|-|.+... +.+|......+|.|+|-+. +|.|+.|.++.+. +-.+ ..|+-|+++
T Consensus 6 ~~~~~~~~~~~~-~~~~~~g~v~~~~~-~~~~~~~~~~~~~~td~~~---~~~~k~f~~~~~~~~~~~~~-~~g~~~~~~ 79 (1041)
T 3f2b_A 6 PVRRLETIVEEE-RRVVVQGYVFDAEV-SELKSGRTLLTMKITDYTN---SILVKMFSRDKEDAELMSGV-KKGMWVKVR 79 (1041)
T ss_dssp -CBCGGGCCSCE-EEEEEEEEEEEEEE-EECTTSCEEEEEEEECSSC---EEEEEEECSSHHHHHHHHTC-CTTCEEEEE
T ss_pred CcccHHHhhccc-ceEEEEEEEEEEEE-EEccCCCEEEEEEEEeCCC---CEEEEEeecccchHHHHhcC-CCCCEEEEE
Confidence 456788887443 35889999988643 4456556889999999854 4999999865443 3456 689999997
Q ss_pred -eEEEEEEcCeeeE
Q 012376 86 -NVMIKKHQAELSA 98 (465)
Q Consensus 86 -rvki~~~~g~~~~ 98 (465)
++....|.+++..
T Consensus 80 g~~~~d~~~~~~~~ 93 (1041)
T 3f2b_A 80 GSVQNDTFVRDLVI 93 (1041)
T ss_dssp EEEEEETTTTEEEE
T ss_pred EEEEeccCCcceEE
Confidence 5667777776543
No 47
>3v2d_T 50S ribosomal protein L19; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T 2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T 2wro_T 2wrr_T 2x9s_T 2x9u_T ...
Probab=47.97 E-value=33 Score=29.42 Aligned_cols=41 Identities=15% Similarity=0.288 Sum_probs=27.6
Q ss_pred CCCCCCCCCCCEEEEeeE-------EEEEEcCeeeEEecCC-ceEEEEEe
Q 012376 70 DQLPRVLSPRDLILLKNV-------MIKKHQAELSAVFYKD-SSSFALFD 111 (465)
Q Consensus 70 ~~LP~v~~~GDII~l~rv-------ki~~~~g~~~~~~~~~-~ss~~lf~ 111 (465)
.++|.+ .+||+|.+|=- ++|.|.|-+.+.-+.+ .++|.|=.
T Consensus 17 ~diP~F-~~GDtV~V~~~i~EG~keRiQ~FeGvVI~rr~~Gl~~tFtVRk 65 (146)
T 3v2d_T 17 TDLPEF-RPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVRK 65 (146)
T ss_dssp CCCCCC-CTTCEEEEEEEEECSSCEEEEEEEEEEEEEECCGGGCEEEEEE
T ss_pred ccCCCc-CCCCEEEEEEEEccCCceeeeeEEEEEEEEECCCCCeEEEEEE
Confidence 579999 79999999743 2467777655554433 35677643
No 48
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=46.98 E-value=48 Score=37.61 Aligned_cols=40 Identities=23% Similarity=0.170 Sum_probs=28.4
Q ss_pred ccccccc-CCceEeEEEEEEEEEe-eCCC--CeEEEEEEcCCCC
Q 012376 159 LSLKDIS-EHRYFDLVCKVFHVSY-DDSK--GLWMLFVWDGTDV 198 (465)
Q Consensus 159 ~~Lkdi~-~~~f~Dlv~qVv~v~~-~~~~--~~~~L~VwDgT~~ 198 (465)
..|++|. +...+-+.++|.++.. +..+ .-.+++|+|||+.
T Consensus 8 ~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~td~~~~ 51 (1041)
T 3f2b_A 8 RRLETIVEEERRVVVQGYVFDAEVSELKSGRTLLTMKITDYTNS 51 (1041)
T ss_dssp BCGGGCCSCEEEEEEEEEEEEEEEEECTTSCEEEEEEEECSSCE
T ss_pred ccHHHhhcccceEEEEEEEEEEEEEEccCCCEEEEEEEEeCCCC
Confidence 5788886 4566778889988763 3333 3568899999953
No 49
>3mxn_A RECQ-mediated genome instability protein 1; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_A 3nbh_A
Probab=44.27 E-value=31 Score=30.06 Aligned_cols=70 Identities=17% Similarity=0.185 Sum_probs=49.7
Q ss_pred ccCCCccccHHHHhh-CCCCCcceEEEEEEEeecCCCccccccCCCCeEEEEEEEEeCCCceEEEEEeccccchhcC
Q 012376 328 DWVNVASVTLMKIAT-QLQGNVRCCCIVRVVSIHPFQAEHYSSPNGSSEYTMKLTLEDPTARIHALLCGKEWVKFFG 403 (465)
Q Consensus 328 ~~~~~p~ttL~dIL~-~p~v~~kfr~~VRVV~~~P~~~edf~~~~~~w~~rf~L~lED~t~ri~~~v~~~da~~f~~ 403 (465)
+-.+-|||=|.-++. .|+.+.. ++|-+|.=.-...+..+.| .|.+...+.|.|+.++|.+.++=-..+.|
T Consensus 17 ~l~s~PFtYL~~l~~~~~~~~~~----~kVKafI~tl~~~l~~~~~--~W~l~a~IsDGS~~LdV~f~~~VLt~lIG 87 (157)
T 3mxn_A 17 DLYSPPFVYLSVLMASKPKEVTT----VKVKAFIVTLTGNLSSSGG--IWSITAKVSDGTAYLDVDFVDEILTSLIG 87 (157)
T ss_dssp HHHCSSCCCHHHHHHTCCSSCEE----EEEEEEEEEECSCCBCGGG--SCBCEEEEECSSCEEEEEECHHHHHHHHS
T ss_pred ccCCCchHHHHHHHhhccCCceE----EEEEEEEEEeccceeecCC--EEEEEEEEeCCceeEEEEeeHHHHHhhhC
Confidence 445779999999985 4544444 4444444445555555667 78999999999999999887766666664
No 50
>3afp_A Single-stranded DNA-binding protein; OB-fold, quaternary structure and stability, changes on oligomerisation, water-bridges, DNA damage; 2.05A {Mycobacterium leprae} PDB: 3afq_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A 1x3e_A 1x3f_A 1x3g_A 3a5u_A*
Probab=35.12 E-value=35 Score=29.91 Aligned_cols=73 Identities=10% Similarity=0.149 Sum_probs=49.2
Q ss_pred CEEEEEEEEEecCCccccCCCceEEEEEEEe-CCCC-----------CCCeEEEEecCCCCCCCCCCCCCCEEEEe-eEE
Q 012376 22 HKVNLLGVVLEFSIPRKSQGTDYVCVLKIVD-DSQQ-----------SPELLVNIFTSSIDQLPRVLSPRDLILLK-NVM 88 (465)
Q Consensus 22 ~~vnviGVVvd~~~P~~trG~D~~~tl~I~D-~s~~-----------~~gl~v~iF~~~~~~LP~v~~~GDII~l~-rvk 88 (465)
.+|.|+|-|..--..+.|....-.++|+|.= .... ..-++|.+|.+..+.+-.-...||-|.+. +++
T Consensus 5 N~V~LiG~L~~dPelr~t~~G~~va~f~lAv~~~~~~~~~Ge~~d~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~VeGrL~ 84 (168)
T 3afp_A 5 TTITIVGNLTADPELRFTSSGAAVVNFTVASTPRIYDRQSGEWKDGEALFLRCNIWREAAENVAESLTRGARVIVTGRLK 84 (168)
T ss_dssp CEEEEEEEESSSCCCEECTTSCEEEEEEEEECC--------CCCCCCCEEEEEEEEHHHHHHHHHHCCTTCEEEEEEEEE
T ss_pred CEEEEEEEECCCCEEEECCCCCEEEEEEEEEccccccccCCcEecCCcEEEEEEEehHHHHHHHHhCCCCCEEEEEEEEE
Confidence 4788999988654445565456788999963 3221 12399999987555554423679988887 889
Q ss_pred EEEEcC
Q 012376 89 IKKHQA 94 (465)
Q Consensus 89 i~~~~g 94 (465)
...|.+
T Consensus 85 ~~~~~d 90 (168)
T 3afp_A 85 QRSFET 90 (168)
T ss_dssp EEEEC-
T ss_pred eeeEEC
Confidence 999964
No 51
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=34.85 E-value=26 Score=40.39 Aligned_cols=76 Identities=22% Similarity=0.260 Sum_probs=36.8
Q ss_pred eehHhhhh-----ccCCEEEEEEEEEecCCccccCCCceEEEEEEEeCCCCCCCeEEEEecCCCCCCCCCCCCCCEEEEe
Q 012376 11 VRIKELAM-----HVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILLK 85 (465)
Q Consensus 11 ~~i~~~~~-----~~~~~vnviGVVvd~~~P~~trG~D~~~tl~I~D~s~~~~gl~v~iF~~~~~~LP~v~~~GDII~l~ 85 (465)
++++++.. ..|+.|.+.|+|+..+.| .|+.++-++-++|-|.+-. +.|.+|.+..+........|.+++++
T Consensus 1027 ~~~~~l~~~~~~~~~g~~v~v~G~v~~~~~~-~Tk~G~~maf~tleD~tg~---~evvvf~~~~~~~~~~l~~~~~~~v~ 1102 (1220)
T 2hpi_A 1027 CTIEELSEFVRELPGKPKVLLSGMVEEVVRK-PTRSGGMMARFTLSDETGA---LEVVVFGRAYEGVSPKLKEDIPLLVL 1102 (1220)
T ss_dssp SCTTTHHHHHSSSSSSCEEEEEEEECCC-------------CEEEEETTEE---EEEC-------------CTTCEEEEE
T ss_pred ccHHHHhhhhhhccCCCeEEEEEEEEEEEEe-ecCCCCeEEEEEEEECCCC---EEEEEcHHHHHHHHHHhccCCEEEEE
Confidence 35666642 356779999999998876 4555577999999998753 99999998878777765666677664
Q ss_pred eEEEEE
Q 012376 86 NVMIKK 91 (465)
Q Consensus 86 rvki~~ 91 (465)
.+++.
T Consensus 1103 -G~v~~ 1107 (1220)
T 2hpi_A 1103 -AEVEK 1107 (1220)
T ss_dssp -EEEC-
T ss_pred -EEEEE
Confidence 46653
No 52
>2zjr_M 50S ribosomal protein L19; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.6 PDB: 1nwx_N* 1nwy_N* 1sm1_N* 1xbp_N* 2zjp_M* 2zjq_M 1nkw_N 3cf5_M* 3dll_M* 3pio_M* 3pip_M* 1pnu_N 1pny_N 1vor_Q 1vou_Q 1vow_Q 1voy_Q 1vp0_Q
Probab=27.23 E-value=46 Score=29.15 Aligned_cols=42 Identities=21% Similarity=0.251 Sum_probs=28.9
Q ss_pred CCCCCCCCCCCEEEEee-E------EEEEEcCeeeEEecCC-ceEEEEEeC
Q 012376 70 DQLPRVLSPRDLILLKN-V------MIKKHQAELSAVFYKD-SSSFALFDG 112 (465)
Q Consensus 70 ~~LP~v~~~GDII~l~r-v------ki~~~~g~~~~~~~~~-~ss~~lf~~ 112 (465)
.++|.+ .+||+|++|= + ++|.|.|-+.+.-+.+ .++|.|=+-
T Consensus 22 ~diP~F-r~GDtV~V~vkI~EG~KeRiQ~FeGVVIarr~~Gl~sTFTVRki 71 (166)
T 2zjr_M 22 RQLPDF-RPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKSFTVRKI 71 (166)
T ss_dssp CCCCCC-SSSEEEEEECCTTSSSCCCCEEEECCEEECCCCGGGCEEEEEEE
T ss_pred cCCCCc-CCCCEEEEEEEEecCCeeeecceEEEEEEEeCCCCCcEEEEEEe
Confidence 579999 7999999982 2 3578888766655433 366777443
No 53
>2ibg_E Protein hedgehog, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: d.65.1.2
Probab=25.55 E-value=55 Score=28.22 Aligned_cols=30 Identities=20% Similarity=0.442 Sum_probs=18.7
Q ss_pred ceEEEEEeccchh----hhhccCCCCC-cEEEEeC
Q 012376 236 GTVLRVSTDRSYE----NFGRYFTATG-KWVRIRN 265 (465)
Q Consensus 236 G~vL~V~~~~~~~----~~~~~~~k~G-~wV~l~N 265 (465)
|+.+.|++.+... ..++-.+..| |||.-..
T Consensus 105 GRAvdit~sd~d~~k~g~La~lAv~aGFDwV~y~~ 139 (150)
T 2ibg_E 105 GRAVTIATSDRDQSKYGMLARLAVEAGFDWVSYVS 139 (150)
T ss_dssp TCEEEEEETTCCGGGHHHHHHHHHHHTCSEEECCC
T ss_pred ceeEEEEecCCChHHHHHHHHHHHHcCCCEEEeCC
Confidence 8888999966322 2333445666 9995443
No 54
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=21.62 E-value=70 Score=25.87 Aligned_cols=26 Identities=12% Similarity=-0.175 Sum_probs=22.8
Q ss_pred EEEEEeccchhhhhccCCCCCcEEEE
Q 012376 238 VLRVSTDRSYENFGRYFTATGKWVRI 263 (465)
Q Consensus 238 vL~V~~~~~~~~~~~~~~k~G~wV~l 263 (465)
-++|.+|...|+.+.+.++.|+.|.+
T Consensus 54 fi~vv~wgk~AE~~~~yl~KG~~V~V 79 (108)
T 3koj_A 54 RLKVVGWGAVAQELQDRCRLNDEVVL 79 (108)
T ss_dssp EEEEEEETHHHHHHHHHCCTTCEEEE
T ss_pred EEEEEEEhHHHHHHHHhCCCCCEEEE
Confidence 47999999999998889999999943
Done!