BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 012377
         (465 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4DIX|A Chain A, Crystal Structure Of The Ig-Ph Domain Of Actin-Binding
           Protein Scab1
 pdb|4DIX|B Chain B, Crystal Structure Of The Ig-Ph Domain Of Actin-Binding
           Protein Scab1
          Length = 230

 Score = 31.6 bits (70), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 29/125 (23%), Positives = 52/125 (41%), Gaps = 10/125 (8%)

Query: 337 CMFQWVRHLQDGT-RHYIEGATNPEYVVTADDVDKLIAVECIPMDDQGRQGELVRRFAND 395
           C  QW R   DG+ +  I GAT   Y     DV +++  + I  D        V      
Sbjct: 42  CTIQWYRSSSDGSKKELISGATKSVYAPEPFDVGRVLHADII-YDGHSLSLSTV------ 94

Query: 396 QNKIKCDLGMQSEIDAYISRGHATFSVLMLMDSSENWEQATL-ILRRSIYRIKIDSTEAI 454
             KI    G+ S ++A + +    F+V++   S E+    ++ +      RIK+   + +
Sbjct: 95  -GKIDPAAGLGSYVEALVRKHDVDFNVVVTQMSGEDHTSESIHLFHVGKMRIKLCKGKTV 153

Query: 455 IEERF 459
           I + +
Sbjct: 154 IAKEY 158


>pdb|2FI7|A Chain A, Crystal Structure Of Pilf : Functional Implication In The
           Type 4 Pilus Biogenesis In Pseudomonas Aeruginosa
 pdb|2FI7|B Chain B, Crystal Structure Of Pilf : Functional Implication In The
           Type 4 Pilus Biogenesis In Pseudomonas Aeruginosa
          Length = 265

 Score = 30.8 bits (68), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 10/68 (14%)

Query: 386 GELVRRFANDQNKIKCDLGMQSEIDAYISRGHATFSVLMLMDSSENWEQATLILRRSIYR 445
           G+ + R + DQN +K D G     DAYI  G              N EQA + LR++   
Sbjct: 27  GQQMGRTSGDQNPLKTDKGRDEARDAYIQLGLGYL-------QRGNTEQAKVPLRKA--- 76

Query: 446 IKIDSTEA 453
           ++ID + A
Sbjct: 77  LEIDPSSA 84


>pdb|4AFX|A Chain A, Crystal Structure Of The Reactive Loop Cleaved Zpi In I2
           Space Group
 pdb|4AJU|A Chain A, Crystal Structure Of The Reactive Loop Cleaved Zpi In P41
           Space Group
          Length = 387

 Score = 29.3 bits (64), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 7/65 (10%)

Query: 61  QKEEIHSLRQQIAV-------ACLKELQLQNEKYTLERKVSELRMAIDEKQNEAITSALN 113
           QK E+H L +Q+ +       A L EL        + R +    + +DE+  EA+   L+
Sbjct: 323 QKYEMHELLRQMGIRRIFSPFADLSELSATGRNLQVSRVLQRTVIEVDERGTEAVAGILS 382

Query: 114 ELARR 118
           E+  R
Sbjct: 383 EITAR 387


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.131    0.381 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,073,442
Number of Sequences: 62578
Number of extensions: 518189
Number of successful extensions: 1284
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1281
Number of HSP's gapped (non-prelim): 15
length of query: 465
length of database: 14,973,337
effective HSP length: 102
effective length of query: 363
effective length of database: 8,590,381
effective search space: 3118308303
effective search space used: 3118308303
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)