Query 012377
Match_columns 465
No_of_seqs 46 out of 48
Neff 2.8
Searched_HMMs 46136
Date Fri Mar 29 02:00:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012377.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012377hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11637 AmiB activator; Provi 82.3 33 0.00072 35.5 13.6 78 54-131 45-135 (428)
2 PF14988 DUF4515: Domain of un 76.0 15 0.00032 35.5 8.3 77 59-135 81-175 (206)
3 PF10186 Atg14: UV radiation r 72.6 62 0.0014 30.6 11.4 91 56-147 27-125 (302)
4 PF12128 DUF3584: Protein of u 72.1 89 0.0019 37.0 14.7 106 57-163 789-894 (1201)
5 PF04012 PspA_IM30: PspA/IM30 64.5 50 0.0011 30.9 8.9 116 45-191 20-139 (221)
6 PLN03144 Carbon catabolite rep 64.4 7.3 0.00016 43.2 3.9 36 348-383 170-205 (606)
7 PRK09039 hypothetical protein; 64.3 66 0.0014 33.1 10.4 122 58-191 48-171 (343)
8 TIGR03185 DNA_S_dndD DNA sulfu 64.1 41 0.00088 36.8 9.4 60 50-109 392-453 (650)
9 PRK10698 phage shock protein P 60.0 87 0.0019 30.4 9.9 74 46-124 22-100 (222)
10 KOG2314 Translation initiation 57.5 8.1 0.00018 43.2 2.8 81 13-120 548-637 (698)
11 COG1704 LemA Uncharacterized c 57.4 24 0.00053 34.3 5.6 47 133-191 91-138 (185)
12 TIGR01005 eps_transp_fam exopo 56.2 1.3E+02 0.0027 33.4 11.5 109 62-170 200-329 (754)
13 PRK09239 chorismate mutase; Pr 54.2 1.5E+02 0.0033 25.9 10.1 94 88-191 7-100 (104)
14 KOG0977 Nuclear envelope prote 53.2 92 0.002 34.8 9.8 45 57-101 35-80 (546)
15 PF15294 Leu_zip: Leucine zipp 51.8 1.5E+02 0.0032 30.6 10.4 40 59-98 135-174 (278)
16 COG2900 SlyX Uncharacterized p 50.4 35 0.00077 28.9 4.8 37 86-125 3-41 (72)
17 PF03961 DUF342: Protein of un 49.4 39 0.00085 35.3 6.1 22 304-325 120-141 (451)
18 TIGR03185 DNA_S_dndD DNA sulfu 48.0 78 0.0017 34.7 8.3 23 128-150 274-296 (650)
19 KOG0978 E3 ubiquitin ligase in 48.0 2.4E+02 0.0052 32.5 12.1 109 80-191 499-621 (698)
20 TIGR02977 phageshock_pspA phag 47.9 2.3E+02 0.005 27.1 10.5 53 45-106 21-74 (219)
21 KOG0250 DNA repair protein RAD 47.0 2.9E+02 0.0063 33.4 12.9 136 52-191 737-891 (1074)
22 PRK10361 DNA recombination pro 45.6 2.9E+02 0.0063 30.4 12.0 57 59-116 56-112 (475)
23 KOG3091 Nuclear pore complex, 45.5 65 0.0014 35.6 7.1 80 47-128 346-446 (508)
24 PF01895 PhoU: PhoU domain; I 45.3 82 0.0018 23.9 5.9 49 53-101 25-73 (88)
25 COG1579 Zn-ribbon protein, pos 43.4 1.8E+02 0.0039 29.3 9.3 88 62-158 37-125 (239)
26 PF11464 Rbsn: Rabenosyn Rab b 41.0 69 0.0015 24.7 4.7 40 63-104 3-42 (42)
27 PLN02939 transferase, transfer 40.4 2.4E+02 0.0052 33.7 11.0 99 51-153 130-280 (977)
28 COG4942 Membrane-bound metallo 39.5 5.4E+02 0.012 28.1 13.6 92 59-158 41-132 (420)
29 PRK02793 phi X174 lysis protei 39.3 75 0.0016 26.2 5.0 33 88-123 5-39 (72)
30 PF09726 Macoilin: Transmembra 39.1 1.6E+02 0.0035 33.6 9.2 67 54-127 543-611 (697)
31 PRK02119 hypothetical protein; 38.7 73 0.0016 26.3 4.9 37 84-123 2-40 (73)
32 PF10186 Atg14: UV radiation r 38.1 3.6E+02 0.0078 25.6 10.7 48 59-106 59-106 (302)
33 TIGR02169 SMC_prok_A chromosom 36.7 4.1E+02 0.0089 30.1 11.8 16 399-414 606-621 (1164)
34 TIGR01795 CM_mono_cladeE monof 36.5 2.8E+02 0.006 23.8 8.5 84 91-187 3-89 (94)
35 PRK14153 heat shock protein Gr 35.9 3.6E+02 0.0079 26.3 9.9 51 139-191 82-136 (194)
36 PLN02524 S-adenosylmethionine 35.3 97 0.0021 32.8 6.4 86 324-447 228-314 (355)
37 TIGR01076 sortase_fam LPXTG-si 35.0 45 0.00098 29.4 3.4 51 314-365 30-85 (136)
38 PF04156 IncA: IncA protein; 34.6 2.9E+02 0.0062 25.2 8.6 28 162-189 156-183 (191)
39 COG1196 Smc Chromosome segrega 34.6 3.9E+02 0.0085 31.7 11.6 58 59-116 372-429 (1163)
40 PF04012 PspA_IM30: PspA/IM30 34.0 83 0.0018 29.5 5.2 46 53-98 88-133 (221)
41 PRK00295 hypothetical protein; 34.0 1E+02 0.0022 25.1 5.0 31 89-122 3-35 (68)
42 PRK06342 transcription elongat 33.9 60 0.0013 30.3 4.2 42 51-97 32-77 (160)
43 PF01025 GrpE: GrpE; InterPro 32.9 2.1E+02 0.0045 25.6 7.3 53 137-191 58-114 (165)
44 PF07989 Microtub_assoc: Micro 32.7 1.2E+02 0.0027 25.2 5.4 63 58-144 2-64 (75)
45 PF11932 DUF3450: Protein of u 32.5 4.7E+02 0.01 25.3 10.5 50 67-117 39-88 (251)
46 PF14048 MBD_C: C-terminal dom 32.3 34 0.00074 29.9 2.2 19 57-75 77-95 (96)
47 PLN02542 fructose-1,6-bisphosp 32.2 61 0.0013 34.9 4.4 80 319-416 234-314 (412)
48 PRK11020 hypothetical protein; 32.2 78 0.0017 29.1 4.5 39 67-108 16-59 (118)
49 PRK14149 heat shock protein Gr 31.8 3.2E+02 0.0069 26.7 8.7 64 139-211 85-152 (191)
50 PRK09293 fructose-1,6-bisphosp 31.2 60 0.0013 33.5 4.0 76 319-413 145-221 (327)
51 PRK04406 hypothetical protein; 30.9 1.2E+02 0.0027 25.2 5.1 32 88-122 8-41 (75)
52 KOG1222 Kinesin associated pro 30.0 2.1E+02 0.0045 32.6 7.9 109 47-179 251-360 (791)
53 COG1579 Zn-ribbon protein, pos 30.0 3.1E+02 0.0067 27.7 8.6 47 56-102 59-114 (239)
54 cd05827 Sortase_C_3 Sortase C 29.3 64 0.0014 28.1 3.4 44 321-365 44-88 (131)
55 PF00038 Filament: Intermediat 29.2 3.9E+02 0.0084 26.1 9.0 50 58-107 211-260 (312)
56 PF04849 HAP1_N: HAP1 N-termin 29.2 1.3E+02 0.0028 31.4 6.0 48 59-106 230-277 (306)
57 PF08838 DUF1811: Protein of u 29.2 60 0.0013 29.1 3.2 33 60-94 11-43 (102)
58 PRK14160 heat shock protein Gr 28.8 5.4E+02 0.012 25.5 9.9 63 139-211 110-174 (211)
59 PRK14154 heat shock protein Gr 28.7 5.7E+02 0.012 25.3 10.0 51 139-191 101-156 (208)
60 PF01025 GrpE: GrpE; InterPro 28.6 1.5E+02 0.0033 26.5 5.7 20 139-158 94-113 (165)
61 PRK11281 hypothetical protein; 28.5 3.2E+02 0.007 33.0 9.7 71 88-158 357-459 (1113)
62 PRK11281 hypothetical protein; 28.0 1.8E+02 0.004 34.9 7.6 60 50-110 67-147 (1113)
63 PF00038 Filament: Intermediat 27.2 2.7E+02 0.0059 27.2 7.6 42 62-103 53-94 (312)
64 PF00901 Orbi_VP5: Orbivirus o 26.7 6.5E+02 0.014 28.3 10.9 109 48-181 83-200 (508)
65 PF11932 DUF3450: Protein of u 26.5 3.9E+02 0.0085 25.9 8.5 25 83-107 62-86 (251)
66 PTZ00421 coronin; Provisional 26.5 1.3E+02 0.0027 32.5 5.6 28 53-83 457-484 (493)
67 PLN02262 fructose-1,6-bisphosp 26.4 77 0.0017 33.1 3.9 76 320-413 158-234 (340)
68 PRK04325 hypothetical protein; 26.3 1.6E+02 0.0035 24.3 5.0 32 89-123 7-40 (74)
69 PRK14148 heat shock protein Gr 26.3 6.2E+02 0.013 24.7 10.2 51 139-191 89-143 (195)
70 KOG0247 Kinesin-like protein [ 26.0 1.2E+03 0.025 27.8 13.3 145 42-191 474-646 (809)
71 TIGR02168 SMC_prok_B chromosom 26.0 9.9E+02 0.021 27.0 12.7 13 342-354 1087-1099(1179)
72 PF13600 DUF4140: N-terminal d 26.0 1E+02 0.0022 25.7 3.9 36 61-96 68-103 (104)
73 cd00354 FBPase Fructose-1,6-bi 25.8 96 0.0021 31.9 4.4 79 319-415 138-217 (315)
74 PRK14143 heat shock protein Gr 25.5 7E+02 0.015 25.1 10.4 43 139-181 116-163 (238)
75 PF07926 TPR_MLP1_2: TPR/MLP1/ 25.3 4.8E+02 0.01 23.2 8.2 66 63-128 59-124 (132)
76 PF11629 Mst1_SARAH: C termina 25.3 2.4E+02 0.0052 22.6 5.5 23 88-110 23-45 (49)
77 PRK14154 heat shock protein Gr 25.3 5.2E+02 0.011 25.6 9.1 108 44-158 39-155 (208)
78 KOG3083 Prohibitin [Posttransl 24.9 69 0.0015 32.8 3.1 41 103-143 141-199 (271)
79 PRK14141 heat shock protein Gr 24.8 5.2E+02 0.011 25.5 9.0 103 48-157 23-138 (209)
80 PF04201 TPD52: Tumour protein 24.0 1.8E+02 0.0039 28.0 5.5 107 45-191 25-138 (162)
81 PRK14164 heat shock protein Gr 23.9 5.7E+02 0.012 25.5 9.1 61 139-210 119-180 (218)
82 PF13874 Nup54: Nucleoporin co 23.8 4E+02 0.0088 24.0 7.5 78 53-140 34-113 (141)
83 PRK12595 bifunctional 3-deoxy- 23.4 3.4E+02 0.0074 28.4 7.9 76 62-137 3-90 (360)
84 TIGR01000 bacteriocin_acc bact 23.2 3.3E+02 0.0071 28.6 7.8 18 24-41 61-78 (457)
85 PF04508 Pox_A_type_inc: Viral 23.1 90 0.002 21.5 2.4 12 63-74 1-12 (23)
86 COG1196 Smc Chromosome segrega 23.1 1.2E+03 0.027 27.8 13.0 25 162-186 968-992 (1163)
87 KOG0933 Structural maintenance 23.0 9E+02 0.019 29.7 11.7 121 67-191 763-884 (1174)
88 PF07047 OPA3: Optic atrophy 3 22.7 1.5E+02 0.0034 26.6 4.6 33 73-105 101-133 (134)
89 PF04011 LemA: LemA family; I 22.7 5.2E+02 0.011 23.9 8.2 48 132-191 90-138 (186)
90 PF06034 DUF919: Nucleopolyhed 22.7 1.9E+02 0.0042 23.8 4.7 42 59-100 7-54 (62)
91 PRK14140 heat shock protein Gr 22.5 7.3E+02 0.016 24.2 10.7 43 139-181 86-132 (191)
92 PF14612 Ino80_Iec3: IEC3 subu 22.0 2.7E+02 0.0059 28.2 6.5 40 89-128 4-46 (232)
93 PF09545 RE_AccI: AccI restric 21.9 6.6E+02 0.014 26.9 9.5 82 96-186 148-234 (366)
94 PF04102 SlyX: SlyX; InterPro 21.7 2.3E+02 0.0049 22.9 5.0 32 89-123 2-35 (69)
95 TIGR01801 CM_A chorismate muta 21.6 3.1E+02 0.0066 23.9 6.1 83 62-144 3-97 (102)
96 PF15516 BpuSI_N: BpuSI N-term 21.6 1.2E+02 0.0026 29.1 3.8 33 338-377 31-64 (159)
97 cd05829 Sortase_E Sortase E (S 21.6 2.5E+02 0.0055 25.2 5.8 51 316-366 42-96 (144)
98 PF13851 GAS: Growth-arrest sp 21.5 5.6E+02 0.012 24.7 8.3 116 58-191 4-120 (201)
99 PF00794 PI3K_rbd: PI3-kinase 21.5 20 0.00043 30.3 -1.2 23 322-344 64-89 (106)
100 PRK14162 heat shock protein Gr 21.1 7.8E+02 0.017 24.0 10.2 50 140-191 89-142 (194)
101 KOG0904 Phosphatidylinositol 3 20.8 25 0.00054 41.4 -0.9 56 322-384 258-317 (1076)
102 TIGR01791 CM_archaeal chorisma 20.6 3.4E+02 0.0073 22.1 5.8 51 67-117 3-58 (83)
103 KOG0161 Myosin class II heavy 20.6 7.1E+02 0.015 32.2 10.8 105 80-189 1206-1312(1930)
104 PRK00736 hypothetical protein; 20.3 2.3E+02 0.0049 23.1 4.7 31 89-122 3-35 (68)
105 PF07743 HSCB_C: HSCB C-termin 20.2 4.5E+02 0.0098 20.9 7.4 32 93-124 44-75 (78)
No 1
>PRK11637 AmiB activator; Provisional
Probab=82.31 E-value=33 Score=35.50 Aligned_cols=78 Identities=15% Similarity=0.159 Sum_probs=46.8
Q ss_pred HHHHhhccHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHhHHhhHH-------------HHHHHHHHHHhhh
Q 012377 54 LYSRARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNEA-------------ITSALNELARRKG 120 (465)
Q Consensus 54 L~~k~re~EEEI~~LRk~LadasvKE~QllnEKyvLErRiA~mRmAfDqqQqdl-------------VdAASKaLSyRQd 120 (465)
+-.+.++.+++|..+.+.|.+..-+..++.++...|+++|+.+.-.++..++++ |+.+-+.|..+++
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~ 124 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQER 124 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555566666666666666666666666777777776666666665555443 2333445555566
Q ss_pred hHhhhhhhhhh
Q 012377 121 VLEENLKLAHD 131 (465)
Q Consensus 121 iiEENiRLtya 131 (465)
.+..=+|-.|.
T Consensus 125 ~l~~rlra~Y~ 135 (428)
T PRK11637 125 LLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHH
Confidence 66666666665
No 2
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=75.96 E-value=15 Score=35.47 Aligned_cols=77 Identities=26% Similarity=0.319 Sum_probs=53.3
Q ss_pred hccHHHHHHHHHHHHHH----hh----hhhhhhhhhhhhHHHHHHHHHHH---------hHHhhHHHHHHHHHHH-Hhhh
Q 012377 59 RMQKEEIHSLRQQIAVA----CL----KELQLQNEKYTLERKVSELRMAI---------DEKQNEAITSALNELA-RRKG 120 (465)
Q Consensus 59 re~EEEI~~LRk~Lada----sv----KE~QllnEKyvLErRiA~mRmAf---------DqqQqdlVdAASKaLS-yRQd 120 (465)
..+|.||..|++.++.. +. =+.|.+.||.-||+-..+++++- .++=|-|.-||-++|. +-++
T Consensus 81 ~~qe~eI~~Le~e~~~~~~e~~~~l~~~~~qfl~EK~~LEke~~e~~i~~l~e~a~~el~~k~~ale~~A~~~l~e~~~~ 160 (206)
T PF14988_consen 81 EQQEREIQTLEEELEKMRAEHAEKLQEAESQFLQEKARLEKEASELKILQLGERAHKELKKKAQALELAAKKSLDEFTRS 160 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999998887652 22 25789999999999887777651 2233334444555443 5678
Q ss_pred hHhhhhhhhhhhhhh
Q 012377 121 VLEENLKLAHDLKVA 135 (465)
Q Consensus 121 iiEENiRLtyalq~a 135 (465)
|..||.+|.-+|.--
T Consensus 161 i~~EN~~L~k~L~~l 175 (206)
T PF14988_consen 161 IKRENQQLRKELLQL 175 (206)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998776543
No 3
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=72.62 E-value=62 Score=30.63 Aligned_cols=91 Identities=19% Similarity=0.152 Sum_probs=50.5
Q ss_pred HHhhccHHHHHHHHHHHHHHhh--------hhhhhhhhhhhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHhhhhHhhhhh
Q 012377 56 SRARMQKEEIHSLRQQIAVACL--------KELQLQNEKYTLERKVSELRMAIDEKQNEAITSALNELARRKGVLEENLK 127 (465)
Q Consensus 56 ~k~re~EEEI~~LRk~Ladasv--------KE~QllnEKyvLErRiA~mRmAfDqqQqdlVdAASKaLSyRQdiiEENiR 127 (465)
.+...-.++...|+.++.++-- .=.++..|...++.|++.+|....++++.+-+.=-+.-..|+.+-...-+
T Consensus 27 ~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~ 106 (302)
T PF10186_consen 27 SELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSR 106 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555666666666433 33455667778888888888888877766544433333333333333444
Q ss_pred hhhhhhhhhhhhHHHHHHHH
Q 012377 128 LAHDLKVAEDERYFFMSSML 147 (465)
Q Consensus 128 Ltyalq~aeQERstFvSSLL 147 (465)
|. +.+...+++..++..+.
T Consensus 107 l~-~~~~~~~~~~~~~~~~~ 125 (302)
T PF10186_consen 107 LS-ASQDLVESRQEQLEELQ 125 (302)
T ss_pred HH-HHHHHHHHHHHHHHHHH
Confidence 44 34444455555554443
No 4
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=72.06 E-value=89 Score=37.04 Aligned_cols=106 Identities=23% Similarity=0.260 Sum_probs=67.9
Q ss_pred HhhccHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhh
Q 012377 57 RARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNEAITSALNELARRKGVLEENLKLAHDLKVAE 136 (465)
Q Consensus 57 k~re~EEEI~~LRk~LadasvKE~QllnEKyvLErRiA~mRmAfDqqQqdlVdAASKaLSyRQdiiEENiRLtyalq~ae 136 (465)
++++++.++..-++=+...=.+.-.++.+|-.|+.+++.++-++.+.++++-.. .+++..+..=+|+.+.-.-+.+..-
T Consensus 789 ~ie~~r~~V~eY~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~le~~~~~~~~~~~~~ 867 (1201)
T PF12128_consen 789 RIEERRAEVIEYEDWLQEEWDKVDELREEKPELEEQLRDLEQELQELEQELNQL-QKEVKQRRKELEEELKALEEQLEQL 867 (1201)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444344545677788888888888888888777776543 4455556666666666555555555
Q ss_pred hhhHHHHHHHHHHhhhcCCCCCcccch
Q 012377 137 DERYFFMSSMLGLLADYGLWPHVTNAS 163 (465)
Q Consensus 137 QERstFvSSLLpLLaEY~LqP~V~DAq 163 (465)
++.-.-+..++.-|+++.+.|+..+|+
T Consensus 868 ~~~l~~l~~~~~~l~~~~~~~~~~~~~ 894 (1201)
T PF12128_consen 868 EEQLRRLRDLLEKLAELSEPPNAEDAE 894 (1201)
T ss_pred HHHHHHHHHHHhhhhhcCCCCCchhhh
Confidence 555555666676678888888888888
No 5
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=64.51 E-value=50 Score=30.94 Aligned_cols=116 Identities=18% Similarity=0.252 Sum_probs=72.2
Q ss_pred cccchhhhhHHHHhhccHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHH----HHHHhHHhhHHHHHHHHHHHHhhh
Q 012377 45 SFQDREAMELYSRARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSEL----RMAIDEKQNEAITSALNELARRKG 120 (465)
Q Consensus 45 ~~qd~~~~~L~~k~re~EEEI~~LRk~LadasvKE~QllnEKyvLErRiA~m----RmAfDqqQqdlVdAASKaLSyRQd 120 (465)
-..||+ .-|=.-+|+-|+.|..+|+.+|.+...+.++-.+...+++.++.+ +.|...-..||.-.| |..+++
T Consensus 20 ~~EDP~-~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~a---l~~k~~ 95 (221)
T PF04012_consen 20 KAEDPE-KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREA---LQRKAD 95 (221)
T ss_pred hhcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH---HHHHHH
Confidence 345777 444457899999999999999998877777666666666655543 456555555554332 222221
Q ss_pred hHhhhhhhhhhhhhhhhhhHHHHHHHHHHhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHHhhhhhhccc
Q 012377 121 VLEENLKLAHDLKVAEDERYFFMSSMLGLLADYGLWPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLT 191 (465)
Q Consensus 121 iiEENiRLtyalq~aeQERstFvSSLLpLLaEY~LqP~V~DAqSIvsnvKvLf~hLq~kL~~te~klke~~ 191 (465)
.-+ +. .. |+..+..+...|..+|.-++.|..||..+..|...+.
T Consensus 96 ~e~--------------~~----~~---------l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ 139 (221)
T PF04012_consen 96 LEE--------------QA----ER---------LEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELK 139 (221)
T ss_pred HHH--------------HH----HH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 00 01 1223345667778888888888888887777765543
No 6
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional
Probab=64.35 E-value=7.3 Score=43.23 Aligned_cols=36 Identities=33% Similarity=0.613 Sum_probs=29.6
Q ss_pred CcccccccCCCcceeeecccccceeEEEeeecCCCC
Q 012377 348 GTRHYIEGATNPEYVVTADDVDKLIAVECIPMDDQG 383 (465)
Q Consensus 348 Gs~~~IegA~~p~Y~vTADDvd~llAiec~Pmdd~~ 383 (465)
|....|+=.....|+.|+|||+-.|-+||+|+|...
T Consensus 170 ~~~~w~~vg~~~~y~p~~~d~g~~lk~~~~~~~~~~ 205 (606)
T PLN03144 170 GGETWIEVGRSKTYTPTADDVGHVLKFECVVVDAET 205 (606)
T ss_pred CCCceEEeCCCccccCChhhCCceEEEEEEEccccc
Confidence 334455655788999999999999999999998874
No 7
>PRK09039 hypothetical protein; Validated
Probab=64.30 E-value=66 Score=33.09 Aligned_cols=122 Identities=14% Similarity=0.063 Sum_probs=66.0
Q ss_pred hhccHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHhhhhHhhhhhhhhh-hhhhh
Q 012377 58 ARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNEAITSALNELARRKGVLEENLKLAHD-LKVAE 136 (465)
Q Consensus 58 ~re~EEEI~~LRk~LadasvKE~QllnEKyvLErRiA~mRmAfDqqQqdlVdAASKaLSyRQdiiEENiRLtya-lq~ae 136 (465)
+...++|+..|..+|++.+.--.==.+....|+.+|+.||--|+.-+ -+..-+|.-+--.++ ...++
T Consensus 48 i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~------------~~r~~Le~~~~~~~~~~~~~~ 115 (343)
T PRK09039 48 ISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAE------------AERSRLQALLAELAGAGAAAE 115 (343)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH------------HHHHHHHHHHhhhhhhcchHH
Confidence 46788999999999999553322223455667777777777666211 111222221110111 00001
Q ss_pred hhhHHHHHHHHHHhhhc-CCCCCcccchhhhhhHHHHHHHHHHHHHHhhhhhhccc
Q 012377 137 DERYFFMSSMLGLLADY-GLWPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLT 191 (465)
Q Consensus 137 QERstFvSSLLpLLaEY-~LqP~V~DAqSIvsnvKvLf~hLq~kL~~te~klke~~ 191 (465)
..-...-.-|=-+.++| .-+|.|.-.++=+..+|.=-..|+..|...+.+.++.+
T Consensus 116 ~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~ 171 (343)
T PRK09039 116 GRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQ 171 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111113344455666 47777777777777777766667777766666665554
No 8
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=64.10 E-value=41 Score=36.83 Aligned_cols=60 Identities=20% Similarity=0.178 Sum_probs=48.3
Q ss_pred hhhhHHHHhhccHHHHHHHHHHHHHHhhhh--hhhhhhhhhhHHHHHHHHHHHhHHhhHHHH
Q 012377 50 EAMELYSRARMQKEEIHSLRQQIAVACLKE--LQLQNEKYTLERKVSELRMAIDEKQNEAIT 109 (465)
Q Consensus 50 ~~~~L~~k~re~EEEI~~LRk~LadasvKE--~QllnEKyvLErRiA~mRmAfDqqQqdlVd 109 (465)
....|..+.++-|+||..|.++|+.+.-.| .++..++..++++++.++-.+...++.+-.
T Consensus 392 ~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~ 453 (650)
T TIGR03185 392 AKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLET 453 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667778899999999999999876533 356677888999999999999998887753
No 9
>PRK10698 phage shock protein PspA; Provisional
Probab=60.00 E-value=87 Score=30.41 Aligned_cols=74 Identities=16% Similarity=0.198 Sum_probs=44.6
Q ss_pred ccchh-hhhHHHHhhccHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHH----HHHHhHHhhHHHHHHHHHHHHhhh
Q 012377 46 FQDRE-AMELYSRARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSEL----RMAIDEKQNEAITSALNELARRKG 120 (465)
Q Consensus 46 ~qd~~-~~~L~~k~re~EEEI~~LRk~LadasvKE~QllnEKyvLErRiA~m----RmAfDqqQqdlVdAASKaLSyRQd 120 (465)
..||+ ..++ -+++-++.+..+|+-+|.+-..+.++-.+...++.++++. ++|...-..|| |-+||..++.
T Consensus 22 aEDP~k~l~q--~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdL---Ar~AL~~K~~ 96 (222)
T PRK10698 22 AEDPQKLVRL--MIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDL---ARAALIEKQK 96 (222)
T ss_pred hcCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH---HHHHHHHHHH
Confidence 45888 5555 4788899999999999877665544444444443333322 44444444443 4556777666
Q ss_pred hHhh
Q 012377 121 VLEE 124 (465)
Q Consensus 121 iiEE 124 (465)
.-+.
T Consensus 97 ~~~~ 100 (222)
T PRK10698 97 LTDL 100 (222)
T ss_pred HHHH
Confidence 6544
No 10
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=57.53 E-value=8.1 Score=43.19 Aligned_cols=81 Identities=19% Similarity=0.304 Sum_probs=55.0
Q ss_pred CCCCCCCChhhhhcccccc-----ccCcccccCCCcccccchhhhhHHHHh----hccHHHHHHHHHHHHHHhhhhhhhh
Q 012377 13 NHRFQAKNSDFVNRHKIET-----HLAPTKQKEDNFISFQDREAMELYSRA----RMQKEEIHSLRQQIAVACLKELQLQ 83 (465)
Q Consensus 13 ~~~~~tpsS~sl~Rh~~e~-----~~~~~~~~e~n~~~~qd~~~~~L~~k~----re~EEEI~~LRk~LadasvKE~Qll 83 (465)
-||-.+-+|.++ ||+.+. .++-|+..++++..+- .+.=|- .=.||++...||.|-+|+.+
T Consensus 548 tGRYvvT~ss~w-rhk~d~GYri~tfqGrll~~~~i~~f~-----qF~WRPRPps~LS~e~~KkIkKnLKky~a~----- 616 (698)
T KOG2314|consen 548 TGRYVVTSSSSW-RHKVDNGYRIFTFQGRLLKEDIIDRFK-----QFLWRPRPPSLLSEEKQKKIKKNLKKYSAQ----- 616 (698)
T ss_pred CCCEEEEeeehh-hhccccceEEEEeecHHHHHHHHHHHH-----hhccCCCCCcccCHHHHHHHHHHHHHHHHH-----
Confidence 366677777677 999876 4566666666443222 121222 23689999999999999974
Q ss_pred hhhhhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHhhh
Q 012377 84 NEKYTLERKVSELRMAIDEKQNEAITSALNELARRKG 120 (465)
Q Consensus 84 nEKyvLErRiA~mRmAfDqqQqdlVdAASKaLSyRQd 120 (465)
|+||-..--+.|||.|.-|+.
T Consensus 617 ----------------FeeqD~~e~~~AsrElvekrR 637 (698)
T KOG2314|consen 617 ----------------FEEQDRLEQSRASRELVEKRR 637 (698)
T ss_pred ----------------HhhhhhHhhhhhHHHHHHHHH
Confidence 777777777888888865543
No 11
>COG1704 LemA Uncharacterized conserved protein [Function unknown]
Probab=57.37 E-value=24 Score=34.28 Aligned_cols=47 Identities=21% Similarity=0.250 Sum_probs=39.9
Q ss_pred hhhhhhhHHHHHHHHHHhhhc-CCCCCcccchhhhhhHHHHHHHHHHHHHHhhhhhhccc
Q 012377 133 KVAEDERYFFMSSMLGLLADY-GLWPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLT 191 (465)
Q Consensus 133 q~aeQERstFvSSLLpLLaEY-~LqP~V~DAqSIvsnvKvLf~hLq~kL~~te~klke~~ 191 (465)
+.|+.|.+-+.+.|+=+-.-| +|.-. ..|..||.+|..||.+|.-++
T Consensus 91 ~~aq~~Ls~~L~rl~a~~E~YPdLKAn------------~~f~~Lq~ql~~tEn~Ia~aR 138 (185)
T COG1704 91 QEAQAELSSALGRLFAVAEAYPDLKAN------------ENFLELQSQLEGTENRIAVAR 138 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcchhhh------------hHHHHHHHHHHhHHHHHHHHH
Confidence 778899999999999888888 66533 469999999999999987665
No 12
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=56.23 E-value=1.3e+02 Score=33.41 Aligned_cols=109 Identities=12% Similarity=0.099 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhh--------hhhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHhhhhHhhh--hhhh--
Q 012377 62 KEEIHSLRQQIAVACLKELQLQNE--------KYTLERKVSELRMAIDEKQNEAITSALNELARRKGVLEEN--LKLA-- 129 (465)
Q Consensus 62 EEEI~~LRk~LadasvKE~QllnE--------KyvLErRiA~mRmAfDqqQqdlVdAASKaLSyRQdiiEEN--iRLt-- 129 (465)
+++|..||++|.++-.+=.+...+ .-+.+.++++++-..-.-|.++++|.++.-..|..+-.-+ .-+.
T Consensus 200 ~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~~~~~~~~~~~~ 279 (754)
T TIGR01005 200 APEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRARANRAAAEGTADSVKKALQNGGSLDVLPEV 279 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhh
Confidence 455666777766654433332221 1134588888887777777777776665554443322111 0000
Q ss_pred --------hhhhhhhhhhHHHHHHHHHHhhhc-CCCCCcccchhhhhhHH
Q 012377 130 --------HDLKVAEDERYFFMSSMLGLLADY-GLWPHVTNASAISNTVK 170 (465)
Q Consensus 130 --------yalq~aeQERstFvSSLLpLLaEY-~LqP~V~DAqSIvsnvK 170 (465)
=.++...+++...-+-+--|...| .-+|.|.++..=+..++
T Consensus 280 ~~~~~~~~~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~ 329 (754)
T TIGR01005 280 LSSQLKLEDLIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLD 329 (754)
T ss_pred hcCcccccHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Confidence 112222333333344444566778 77888877544444333
No 13
>PRK09239 chorismate mutase; Provisional
Probab=54.22 E-value=1.5e+02 Score=25.91 Aligned_cols=94 Identities=15% Similarity=0.142 Sum_probs=57.3
Q ss_pred hhHHHHHHHHHHHhHHhhHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhHHHHHHHHHHhhhcCCCCCcccchhhhh
Q 012377 88 TLERKVSELRMAIDEKQNEAITSALNELARRKGVLEENLKLAHDLKVAEDERYFFMSSMLGLLADYGLWPHVTNASAISN 167 (465)
Q Consensus 88 vLErRiA~mRmAfDqqQqdlVdAASKaLSyRQdiiEENiRLtyalq~aeQERstFvSSLLpLLaEY~LqP~V~DAqSIvs 167 (465)
-+...+.++|-.+|+-=..||+.-+|-+.+=+.|.+-...-...+-..++|... +..+--+..+++|.|.+
T Consensus 7 ~~~~~L~~lR~~ID~ID~eIv~LLa~R~~l~~~Ia~~K~~~~~~i~dp~RE~~v-l~~~~~~a~~~gl~p~~-------- 77 (104)
T PRK09239 7 RAPAELAALRQSIDNIDAALIHMLAERFKCTQAVGVLKAEHGLPPADPAREAYQ-IERLRQLAKDANLDPDF-------- 77 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH-HHHHHHHHHHCCCCHHH--------
Confidence 344567777877777666676654444444444433322222222233444433 35566777889999974
Q ss_pred hHHHHHHHHHHHHHHhhhhhhccc
Q 012377 168 TVKHLYDQLQSQIRTSYDRIRDLT 191 (465)
Q Consensus 168 nvKvLf~hLq~kL~~te~klke~~ 191 (465)
++.+|+.+-+.....++++....
T Consensus 78 -~~~i~~~ii~esir~q~~i~~~~ 100 (104)
T PRK09239 78 -AEKFLNFIIKEVIRHHERIAAEH 100 (104)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhcc
Confidence 47889999888888888766554
No 14
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=53.24 E-value=92 Score=34.75 Aligned_cols=45 Identities=24% Similarity=0.339 Sum_probs=38.3
Q ss_pred HhhccH-HHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHh
Q 012377 57 RARMQK-EEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAID 101 (465)
Q Consensus 57 k~re~E-EEI~~LRk~LadasvKE~QllnEKyvLErRiA~mRmAfD 101 (465)
.+|++| +||..|=.|||+|.=|=-+|=.|.+.||-.|-.+|-+|-
T Consensus 35 ~sR~rEK~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~ 80 (546)
T KOG0977|consen 35 DSREREKKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVG 80 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 444443 689999999999999999999999999999998887664
No 15
>PF15294 Leu_zip: Leucine zipper
Probab=51.81 E-value=1.5e+02 Score=30.57 Aligned_cols=40 Identities=23% Similarity=0.244 Sum_probs=34.8
Q ss_pred hccHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHH
Q 012377 59 RMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRM 98 (465)
Q Consensus 59 re~EEEI~~LRk~LadasvKE~QllnEKyvLErRiA~mRm 98 (465)
+.--+|...||.||...--.=...+.||..|++.+.+||.
T Consensus 135 ~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 135 DRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445788899999998888888889999999999999998
No 16
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.36 E-value=35 Score=28.95 Aligned_cols=37 Identities=27% Similarity=0.443 Sum_probs=29.2
Q ss_pred hhhhHHHHHH--HHHHHhHHhhHHHHHHHHHHHHhhhhHhhh
Q 012377 86 KYTLERKVSE--LRMAIDEKQNEAITSALNELARRKGVLEEN 125 (465)
Q Consensus 86 KyvLErRiA~--mRmAfDqqQqdlVdAASKaLSyRQdiiEEN 125 (465)
...||+||.+ +|+|| |.+.|+.-|-+|..-|-+|+.+
T Consensus 3 ~~~lE~Ri~eLE~r~Af---QE~tieeLn~~laEq~~~i~k~ 41 (72)
T COG2900 3 DMELEARIIELEIRLAF---QEQTIEELNDALAEQQLVIDKL 41 (72)
T ss_pred hhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 3468999986 58898 6778998888888888777754
No 17
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=49.40 E-value=39 Score=35.34 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=18.5
Q ss_pred CCCCCcccceeecccCCCccee
Q 012377 304 EGGPGIEGFQIIGEATPGEKLL 325 (465)
Q Consensus 304 dplP~i~gl~I~Gda~pG~~L~ 325 (465)
.|.||.+|..+.|+.+|...-.
T Consensus 120 p~~~G~~G~~V~G~~I~~~~~~ 141 (451)
T PF03961_consen 120 PPTPGEPGRDVFGEPIPAKPGK 141 (451)
T ss_pred cCCCCCCCcccCCCCcCCCCCC
Confidence 3799999999999999876544
No 18
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=48.00 E-value=78 Score=34.73 Aligned_cols=23 Identities=17% Similarity=0.108 Sum_probs=15.0
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHh
Q 012377 128 LAHDLKVAEDERYFFMSSMLGLL 150 (465)
Q Consensus 128 Ltyalq~aeQERstFvSSLLpLL 150 (465)
|--.++.++++..-|.+..+||+
T Consensus 274 le~e~~e~~~~l~~l~~~~~p~~ 296 (650)
T TIGR03185 274 IEAARKANRAQLRELAADPLPLL 296 (650)
T ss_pred HHHHHHHHHHHHHHHhcccCCHh
Confidence 34455556677777787777774
No 19
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=47.99 E-value=2.4e+02 Score=32.54 Aligned_cols=109 Identities=17% Similarity=0.161 Sum_probs=76.3
Q ss_pred hhhhhhhhhhHHHHHHHHHHHhHHhhHH-------------HHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhHHHHHHH
Q 012377 80 LQLQNEKYTLERKVSELRMAIDEKQNEA-------------ITSALNELARRKGVLEENLKLAHDLKVAEDERYFFMSSM 146 (465)
Q Consensus 80 ~QllnEKyvLErRiA~mRmAfDqqQqdl-------------VdAASKaLSyRQdiiEENiRLtyalq~aeQERstFvSSL 146 (465)
--|++||++|+.-|+.|--+.|-.++.+ +..-+|.|--++..||.+=|.+=++.---...-.++...
T Consensus 499 k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~ 578 (698)
T KOG0978|consen 499 KLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKS 578 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478899999999999887777666543 334567777788888877766544332222222222222
Q ss_pred HHHhhhc-CCCCCcccchhhhhhHHHHHHHHHHHHHHhhhhhhccc
Q 012377 147 LGLLADY-GLWPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLT 191 (465)
Q Consensus 147 LpLLaEY-~LqP~V~DAqSIvsnvKvLf~hLq~kL~~te~klke~~ 191 (465)
=+.+ .+++.+.|+.+=+...+--.+||++++..+..||....
T Consensus 579 ---~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k 621 (698)
T KOG0978|consen 579 ---EAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLK 621 (698)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2334 67888888888888888888999999999999988776
No 20
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=47.94 E-value=2.3e+02 Score=27.15 Aligned_cols=53 Identities=23% Similarity=0.300 Sum_probs=34.7
Q ss_pred cccchh-hhhHHHHhhccHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHhHHhhH
Q 012377 45 SFQDRE-AMELYSRARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNE 106 (465)
Q Consensus 45 ~~qd~~-~~~L~~k~re~EEEI~~LRk~LadasvKE~QllnEKyvLErRiA~mRmAfDqqQqd 106 (465)
-..||+ ..+. -+|+-++.|...|+-||.+-..+ ..|||+++.++...+..++.
T Consensus 21 k~EDP~~~l~q--~irem~~~l~~ar~~lA~~~a~~-------k~~e~~~~~~~~~~~~~~~~ 74 (219)
T TIGR02977 21 KAEDPEKMIRL--IIQEMEDTLVEVRTTSARTIADK-------KELERRVSRLEAQVADWQEK 74 (219)
T ss_pred hccCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 346888 4454 46888889999999998876654 45566665555444444433
No 21
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=46.99 E-value=2.9e+02 Score=33.42 Aligned_cols=136 Identities=17% Similarity=0.142 Sum_probs=88.3
Q ss_pred hhHHHHhhccHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHhhhhH---------
Q 012377 52 MELYSRARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNEAITSALNELARRKGVL--------- 122 (465)
Q Consensus 52 ~~L~~k~re~EEEI~~LRk~LadasvKE~QllnEKyvLErRiA~mRmAfDqqQqdlVdAASKaLSyRQdii--------- 122 (465)
.+|+...+..++||...+..+-+..-+.-+|..|+.-|+.-.+.+|.++- ++++..|++--+|..|++-+
T Consensus 737 ~~l~~ei~~~~~eIe~~~~~~e~l~~e~e~~~~e~~e~~~~~~~~~~~l~-~e~~~l~~l~~el~~r~dk~~s~e~~~~H 815 (1074)
T KOG0250|consen 737 EDLAREIKKKEKEIEEKEAPLEKLKEELEHIELEAQELEEYYAAGREKLQ-GEISKLDALKEELKLREDKLRSAEDEKRH 815 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhHHHHHHHHHHHHHhhhhhhhhh
Confidence 37777888888899888888888888889999999999999999999995 55666788888888887755
Q ss_pred -hhhhh-hhhhhhhhhhhhHHHHHHHHHHh-------hhcCCCC-CcccchhhhhhHHHHHHHHHHHHHHhhhhhhccc
Q 012377 123 -EENLK-LAHDLKVAEDERYFFMSSMLGLL-------ADYGLWP-HVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLT 191 (465)
Q Consensus 123 -EENiR-Ltyalq~aeQERstFvSSLLpLL-------aEY~LqP-~V~DAqSIvsnvKvLf~hLq~kL~~te~klke~~ 191 (465)
|++++ -.-++.-+|-| .+..=.|+. +++-=-| -+.+-+--|.-+|.--+.|+.+++-.++.+.+++
T Consensus 816 yE~~~K~~l~~l~~~E~~---~~~~e~~~~e~~~ka~~~cp~~~~ei~~~~~~~~eik~ei~rlk~~i~~~ee~~~~~~ 891 (1074)
T KOG0250|consen 816 YEDKLKSRLEELKQKEVE---KVNLEEPRAEEDQKARTECPEEGIEIEALGKTVAEIKREIKRLKRQIQMCEESLGELE 891 (1074)
T ss_pred HHHHHHHhhHHHHHHHHH---HHhhhcchhhhCchhhhhCccccchhhcccchHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 34554 12222222222 222222222 2221000 1111111356677778888888888877776665
No 22
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=45.60 E-value=2.9e+02 Score=30.43 Aligned_cols=57 Identities=11% Similarity=0.154 Sum_probs=31.1
Q ss_pred hccHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHhHHhhHHHHHHHHHHH
Q 012377 59 RMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNEAITSALNELA 116 (465)
Q Consensus 59 re~EEEI~~LRk~LadasvKE~QllnEKyvLErRiA~mRmAfDqqQqdlVdAASKaLS 116 (465)
.+.++++..++.+|...--....+..+...|+.|+...|-+..+|++. ...|.+.|+
T Consensus 56 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~-l~~~~~~L~ 112 (475)
T PRK10361 56 EHWRAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQ-MINSEQRLS 112 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 333444445555554444444555556666777777777777665543 344444443
No 23
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.46 E-value=65 Score=35.65 Aligned_cols=80 Identities=26% Similarity=0.283 Sum_probs=51.8
Q ss_pred cchhhhhHHHHhhccHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHH---------------------HHHHHHhHHhh
Q 012377 47 QDREAMELYSRARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVS---------------------ELRMAIDEKQN 105 (465)
Q Consensus 47 qd~~~~~L~~k~re~EEEI~~LRk~LadasvKE~QllnEKyvLErRiA---------------------~mRmAfDqqQq 105 (465)
||-+++.---|++.-.|++..|.||=||+.+|=+++.+---.|++||= +||.-+|--++
T Consensus 346 Q~q~~~~~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqeilr~~G~~L~~~EE~Lr~Kldtll~ 425 (508)
T KOG3091|consen 346 QDQEVKQHRIRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHRILRVMIKQEILRKRGYALTPDEEELRAKLDTLLA 425 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccHHHHHHHHHHHHH
Confidence 333333333455666677778888999999999999998888999982 34444444333
Q ss_pred HHHHHHHHHHHHhhhhHhhhhhh
Q 012377 106 EAITSALNELARRKGVLEENLKL 128 (465)
Q Consensus 106 dlVdAASKaLSyRQdiiEENiRL 128 (465)
.+=+= .+|..|=++|-|=+|.
T Consensus 426 ~ln~P--nq~k~Rl~~L~e~~r~ 446 (508)
T KOG3091|consen 426 QLNAP--NQLKARLDELYEILRM 446 (508)
T ss_pred HhcCh--HHHHHHHHHHHHHHHh
Confidence 33222 5677777777666664
No 24
>PF01895 PhoU: PhoU domain; InterPro: IPR008170 This family contains phosphate regulatory proteins including PhoU. PhoU proteins are known to play a role in the regulation of phosphate uptake. The PhoU domain is composed of a three helix bundle []. The PhoU protein contains two copies of this domain. The domain binds to an iron cluster via its conserved E/DXXXD motif. Deletion of PhoU activates constitutive expression of the phosphate ABC transporter and allows phosphate transport, but causes a growth defect; suggesting that the protein has some secondary function []. ; PDB: 2I0M_A 1T72_B 1T8B_A 1SUM_B 1VCT_A 2BKN_A 2BKP_A 2BKO_A.
Probab=45.34 E-value=82 Score=23.89 Aligned_cols=49 Identities=37% Similarity=0.317 Sum_probs=35.2
Q ss_pred hHHHHhhccHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHh
Q 012377 53 ELYSRARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAID 101 (465)
Q Consensus 53 ~L~~k~re~EEEI~~LRk~LadasvKE~QllnEKyvLErRiA~mRmAfD 101 (465)
++..++...|++|..|...+.++.++.++-.+....++.=+.+|+++.+
T Consensus 25 ~~a~~i~~~e~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 73 (88)
T PF01895_consen 25 ELAQEIIQLEEEIDELYREIRRQILKILKNQNPLEELRELVGLLRIARD 73 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH
Confidence 5667888899999999999999988877443333335555666666644
No 25
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=43.35 E-value=1.8e+02 Score=29.29 Aligned_cols=88 Identities=18% Similarity=0.291 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhHH
Q 012377 62 KEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNEAITSALNELARRKGVLEENLKLAHDLKVAEDERYF 141 (465)
Q Consensus 62 EEEI~~LRk~LadasvKE~QllnEKyvLErRiA~mRmAfDqqQqdlVdAASKaLSyRQdiiEENiRLtyalq~aeQERst 141 (465)
+.|+..+++.+.+.=+.=--|-+++.-||-.|..+|=-.+--+..+ ++++++=-|+. |..+++.|++.+-.
T Consensus 37 ~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl-~~v~~~~e~~a--------L~~E~~~ak~r~~~ 107 (239)
T COG1579 37 KAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL-SAVKDERELRA--------LNIEIQIAKERINS 107 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccHHHHHH--------HHHHHHHHHHHHHH
Confidence 4566677777777666666677788888888888875555555555 66666655553 77778888888888
Q ss_pred HHHHHHHHhhhc-CCCCC
Q 012377 142 FMSSMLGLLADY-GLWPH 158 (465)
Q Consensus 142 FvSSLLpLLaEY-~LqP~ 158 (465)
.-+.|.+|+-++ .|+=-
T Consensus 108 le~el~~l~~~~~~l~~~ 125 (239)
T COG1579 108 LEDELAELMEEIEKLEKE 125 (239)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888888776 44433
No 26
>PF11464 Rbsn: Rabenosyn Rab binding domain; InterPro: IPR021565 Rabenosyn-5 (Rbsn) is a multivalent effector with interacts with the Rab family.Rsbn contains distinct Rab4 and Rab5 binding sites within residues 264-500 and 627-784 respectively []. Rab proteins are GTPases involved in the regulation of all stages of membrane trafficking []. ; PDB: 1Z0K_B 1YZM_A 1Z0J_B.
Probab=41.02 E-value=69 Score=24.65 Aligned_cols=40 Identities=38% Similarity=0.426 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHhHHh
Q 012377 63 EEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQ 104 (465)
Q Consensus 63 EEI~~LRk~LadasvKE~QllnEKyvLErRiA~mRmAfDqqQ 104 (465)
|.|..+|..|-+| |.+.=..|-.+||+-+.+|+-.|++||
T Consensus 3 eQi~~I~~~I~qA--k~~~r~dEV~~L~~NL~EL~~e~~~qq 42 (42)
T PF11464_consen 3 EQINIIESYIKQA--KAARRFDEVATLEENLRELQDEIDEQQ 42 (42)
T ss_dssp HHHHHHHHHHHHH--HHTT-HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH--HHhcCcHHHHHHHHHHHHHHHHHHhcC
Confidence 5677888888776 677788999999999999999999987
No 27
>PLN02939 transferase, transferring glycosyl groups
Probab=40.39 E-value=2.4e+02 Score=33.68 Aligned_cols=99 Identities=25% Similarity=0.372 Sum_probs=61.8
Q ss_pred hhhHHHHhhccHHHHHHHHHHHHHHhhhhh-hhhhhhhhhHHHHH--HHHHHHhHHhhH---------------------
Q 012377 51 AMELYSRARMQKEEIHSLRQQIAVACLKEL-QLQNEKYTLERKVS--ELRMAIDEKQNE--------------------- 106 (465)
Q Consensus 51 ~~~L~~k~re~EEEI~~LRk~LadasvKE~-QllnEKyvLErRiA--~mRmAfDqqQqd--------------------- 106 (465)
-.+|.--++.-|.-|+.|-+- ..-.+.++ .||+||..|.++|. +||+|=-..+-.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (977)
T PLN02939 130 LEDLVGMIQNAEKNILLLNQA-RLQALEDLEKILTEKEALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRN 208 (977)
T ss_pred HHHHHHHHHHHHhhhHhHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhhhhccccchhhHHHHHHHhh
Confidence 346777778888888766432 22334444 48999999988865 666664211110
Q ss_pred -----------HHHHHHHHHHHhhhhHhhhhhhhhhhhhh-----------------hhhhHHHHHHHHHHhhhc
Q 012377 107 -----------AITSALNELARRKGVLEENLKLAHDLKVA-----------------EDERYFFMSSMLGLLADY 153 (465)
Q Consensus 107 -----------lVdAASKaLSyRQdiiEENiRLtyalq~a-----------------eQERstFvSSLLpLLaEY 153 (465)
-|.+-+++|. .+-|||+-|--+++.. +.||+..-+||-.|=+.|
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (977)
T PLN02939 209 ELLIRGATEGLCVHSLSKELD---VLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKF 280 (977)
T ss_pred hhhccccccccccccHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112345554 2458999998887754 667777778877776555
No 28
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=39.51 E-value=5.4e+02 Score=28.12 Aligned_cols=92 Identities=24% Similarity=0.289 Sum_probs=50.6
Q ss_pred hccHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhh
Q 012377 59 RMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNEAITSALNELARRKGVLEENLKLAHDLKVAEDE 138 (465)
Q Consensus 59 re~EEEI~~LRk~LadasvKE~QllnEKyvLErRiA~mRmAfDqqQqdlVdAASKaLSyRQdiiEENiRLtyalq~aeQE 138 (465)
+.-..||..+.+.|+...=+=.+|..+--.||+.|+.++ ..|+..+..-=.-+++|-+=|=+| -+|++.+.|
T Consensus 41 ~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~-------~ql~~s~~~l~~~~~~I~~~~~~l-~~l~~q~r~ 112 (420)
T COG4942 41 KQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLE-------AQLIETADDLKKLRKQIADLNARL-NALEVQERE 112 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhHHHHHHhhHHHHHHHH-HHHHHHHHH
Confidence 344455555555555544444444444444444444443 334433332222233333333222 367777788
Q ss_pred hHHHHHHHHHHhhhcCCCCC
Q 012377 139 RYFFMSSMLGLLADYGLWPH 158 (465)
Q Consensus 139 RstFvSSLLpLLaEY~LqP~ 158 (465)
|.-+++-+|--+--.+..||
T Consensus 113 qr~~La~~L~A~~r~g~~p~ 132 (420)
T COG4942 113 QRRRLAEQLAALQRSGRNPP 132 (420)
T ss_pred HHHHHHHHHHHHHhccCCCC
Confidence 89999998888877788885
No 29
>PRK02793 phi X174 lysis protein; Provisional
Probab=39.26 E-value=75 Score=26.18 Aligned_cols=33 Identities=24% Similarity=0.332 Sum_probs=25.1
Q ss_pred hhHHHHHHH--HHHHhHHhhHHHHHHHHHHHHhhhhHh
Q 012377 88 TLERKVSEL--RMAIDEKQNEAITSALNELARRKGVLE 123 (465)
Q Consensus 88 vLErRiA~m--RmAfDqqQqdlVdAASKaLSyRQdiiE 123 (465)
.+|.||.+| |+|| |.+.|+.=++++..-|..|.
T Consensus 5 ~~e~Ri~~LE~~laf---Qe~tIe~Ln~~v~~Qq~~I~ 39 (72)
T PRK02793 5 SLEARLAELESRLAF---QEITIEELNVTVTAHEMEMA 39 (72)
T ss_pred hHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 377777754 7777 88999999999988775553
No 30
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=39.08 E-value=1.6e+02 Score=33.55 Aligned_cols=67 Identities=33% Similarity=0.419 Sum_probs=45.4
Q ss_pred HHHHhhccHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHH--hHHhhHHHHHHHHHHHHhhhhHhhhhh
Q 012377 54 LYSRARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAI--DEKQNEAITSALNELARRKGVLEENLK 127 (465)
Q Consensus 54 L~~k~re~EEEI~~LRk~LadasvKE~QllnEKyvLErRiA~mRmAf--DqqQqdlVdAASKaLSyRQdiiEENiR 127 (465)
+=.|.++-|.||.+||.-|. .||-| +..||..+.+||+.- +++-.+..=+|+-||--+-..||+|+.
T Consensus 543 ~r~r~~~lE~E~~~lr~elk---~kee~----~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLs 611 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELK---QKEEQ----IRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLS 611 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHH----HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44577888888888886553 45544 467888888888852 244455666777777766666666654
No 31
>PRK02119 hypothetical protein; Provisional
Probab=38.67 E-value=73 Score=26.33 Aligned_cols=37 Identities=22% Similarity=0.382 Sum_probs=27.5
Q ss_pred hhhhhhHHHHHHH--HHHHhHHhhHHHHHHHHHHHHhhhhHh
Q 012377 84 NEKYTLERKVSEL--RMAIDEKQNEAITSALNELARRKGVLE 123 (465)
Q Consensus 84 nEKyvLErRiA~m--RmAfDqqQqdlVdAASKaLSyRQdiiE 123 (465)
+|-..||.||.+| |+|| |.+.|+.=++++..=|..|.
T Consensus 2 ~~~~~~e~Ri~~LE~rla~---QE~tie~LN~~v~~Qq~~id 40 (73)
T PRK02119 2 QIQQNLENRIAELEMKIAF---QENLLEELNQALIEQQFVID 40 (73)
T ss_pred cchHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 3445688888764 7777 78999999998887776553
No 32
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=38.08 E-value=3.6e+02 Score=25.59 Aligned_cols=48 Identities=19% Similarity=0.316 Sum_probs=18.3
Q ss_pred hccHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHhHHhhH
Q 012377 59 RMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNE 106 (465)
Q Consensus 59 re~EEEI~~LRk~LadasvKE~QllnEKyvLErRiA~mRmAfDqqQqd 106 (465)
+....++..++.+++...-+=.++..+-..+-+|++.+|-+.....+.
T Consensus 59 ~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~ 106 (302)
T PF10186_consen 59 QQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSR 106 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444443332222222333333334444444444444433
No 33
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=36.72 E-value=4.1e+02 Score=30.06 Aligned_cols=16 Identities=6% Similarity=0.133 Sum_probs=8.6
Q ss_pred cccCccchHHHHHHhh
Q 012377 399 IKCDLGMQSEIDAYIS 414 (465)
Q Consensus 399 I~cdp~mq~~I~~~~~ 414 (465)
|.|+++....|+..++
T Consensus 606 i~~~~~~~~~~~~~lg 621 (1164)
T TIGR02169 606 VEFDPKYEPAFKYVFG 621 (1164)
T ss_pred ccCcHHHHHHHHHHCC
Confidence 5566655555554443
No 34
>TIGR01795 CM_mono_cladeE monofunctional chorismate mutase, alpha proteobacterial type. The alpha proteobacterial members are trusted because the pathways of CM are evident and there is only one plausible CM in the genome. In S. coelicolor, however, there is another aparrent monofunctional CM.
Probab=36.54 E-value=2.8e+02 Score=23.84 Aligned_cols=84 Identities=23% Similarity=0.288 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhHHhhHHHHHHHHHHHHhhhhHhhhhhhh--hhhhhhhhhhHHH-HHHHHHHhhhcCCCCCcccchhhhh
Q 012377 91 RKVSELRMAIDEKQNEAITSALNELARRKGVLEENLKLA--HDLKVAEDERYFF-MSSMLGLLADYGLWPHVTNASAISN 167 (465)
Q Consensus 91 rRiA~mRmAfDqqQqdlVdAASKaLSyRQdiiEENiRLt--yalq~aeQERstF-vSSLLpLLaEY~LqP~V~DAqSIvs 167 (465)
++++++|-.+|+-=..||+- |+.|..+..+--++- ..+-+-+.+|-.- +..+.-+..++||.|.+.
T Consensus 3 ~~L~~lR~~ID~ID~qLv~L----L~~R~~~~~~ia~~K~~~~~~v~dp~Re~~vl~~~~~~a~~~gl~p~~~------- 71 (94)
T TIGR01795 3 AELKALRQSIDNIDAAVIHM----LAERFKCTSQVGVLKANAGLAPADPAREDYQIARLRRLAIDAGLDPEFA------- 71 (94)
T ss_pred hhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHH-------
Confidence 35677887777766666654 555555555544433 2344444455433 356788889999999853
Q ss_pred hHHHHHHHHHHHHHHhhhhh
Q 012377 168 TVKHLYDQLQSQIRTSYDRI 187 (465)
Q Consensus 168 nvKvLf~hLq~kL~~te~kl 187 (465)
..||+.+.+.....++++
T Consensus 72 --e~i~~~i~~esir~q~~~ 89 (94)
T TIGR01795 72 --EKFLNFIVTEVIKHHERI 89 (94)
T ss_pred --HHHHHHHHHHHHHHHHHH
Confidence 677888888777666553
No 35
>PRK14153 heat shock protein GrpE; Provisional
Probab=35.95 E-value=3.6e+02 Score=26.30 Aligned_cols=51 Identities=10% Similarity=0.141 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHhhhc--CCC--CCcccchhhhhhHHHHHHHHHHHHHHhhhhhhccc
Q 012377 139 RYFFMSSMLGLLADY--GLW--PHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLT 191 (465)
Q Consensus 139 RstFvSSLLpLLaEY--~Lq--P~V~DAqSIvsnvKvLf~hLq~kL~~te~klke~~ 191 (465)
...|+..|||.+-.+ -|. +.-.+..+|+.+|+.++++|..-|. ...|+++.
T Consensus 82 ~~~~~~~LLpv~DnLerAl~~~~~~~~~~~l~~Gvemi~k~~~~vL~--k~Gv~~I~ 136 (194)
T PRK14153 82 LEQVLLDLLEVTDNFERALESARTAEDMNSIVEGIEMVSKQFFSILE--KYGLERIE 136 (194)
T ss_pred HHHHHHHHhhHHhHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHH--HCCCeeeC
Confidence 346889999998877 232 2234568899999999999988874 45555555
No 36
>PLN02524 S-adenosylmethionine decarboxylase
Probab=35.29 E-value=97 Score=32.85 Aligned_cols=86 Identities=23% Similarity=0.290 Sum_probs=54.0
Q ss_pred eeecccccCCcccceeeeEEeccCCcccccccCCCcceeeecccccceeEEEeeecCCCCcccceeEEeecCCCccccCc
Q 012377 324 LLGCGYPVRGTTLCMFQWVRHLQDGTRHYIEGATNPEYVVTADDVDKLIAVECIPMDDQGRQGELVRRFANDQNKIKCDL 403 (465)
Q Consensus 324 L~acG~~inGTt~c~FqWVrhleDGs~~~IegA~~p~Y~vTADDvd~llAiec~Pmdd~~rkGelV~~~aNd~~kI~cdp 403 (465)
..=||||+|| |+|..--+--||..|==.+.+.|+.=-|. +..
T Consensus 228 F~PCGYSmN~-------------------i~g~~y~TIHVTPE~~~SYaSFEtn~~~~-------------------~~~ 269 (355)
T PLN02524 228 FDPCGYSMNG-------------------IEGDAISTIHVTPEDGFSYASFEAMGYDP-------------------GDL 269 (355)
T ss_pred cCCCcccccc-------------------cCCCceEEEEECCCCCCeEEEEEeccCCc-------------------ccc
Confidence 4569999996 45666666779999999999999852111 112
Q ss_pred cchHHHHHHhhh-cceEEEEEeecccccccccceeEEeecceEEe
Q 012377 404 GMQSEIDAYISR-GHATFSVLMLMDSSENWEQATLILRRSIYRIK 447 (465)
Q Consensus 404 ~mq~~I~~~~~~-G~asf~V~l~~~~~d~wE~atL~irR~gy~ik 447 (465)
.+.+.|++.+.. .=.+|.|.+..+...........+.-.||.-+
T Consensus 270 ~~~~lv~rVl~~F~P~~fsvt~~~~~~~~~~~~~~~~~~~gY~~~ 314 (355)
T PLN02524 270 DLSQLVERVLACFKPKEFSVAVHANVGGEAGSWGCSLDPDGYSCK 314 (355)
T ss_pred CHHHHHHHHHhhcCCceEEEEEEecCccchhccccccCcCCceec
Confidence 366667766655 33457777765432333333344455788654
No 37
>TIGR01076 sortase_fam LPXTG-site transpeptidase (sortase) family protein. of an LPXTG motif to the cell wall. It also includes a protein required for correct assembly of an LPXTG-containing fimbrial protein, a set of homologous proteins from Streptococcus pneumoniae, in which LPXTG proteins are common. However, related proteins are found in Bacillus subtilis and Methanobacterium thermoautotrophicum, in which LPXTG-mediated cell wall attachment is not known.
Probab=34.97 E-value=45 Score=29.43 Aligned_cols=51 Identities=24% Similarity=0.335 Sum_probs=35.3
Q ss_pred eecccCC----CcceeecccccCCcccceeeeEEeccCCcccccccC-CCcceeeec
Q 012377 314 IIGEATP----GEKLLGCGYPVRGTTLCMFQWVRHLQDGTRHYIEGA-TNPEYVVTA 365 (465)
Q Consensus 314 I~Gda~p----G~~L~acG~~inGTt~c~FqWVrhleDGs~~~IegA-~~p~Y~vTA 365 (465)
+.|-++| ++-..-.||... ..-..|..+..|+.|..-+|+.. +..+|-|++
T Consensus 30 ~~~s~~p~~g~~gN~vIaGH~~~-~~~~~F~~L~~l~~GD~i~v~~~~~~~~Y~V~~ 85 (136)
T TIGR01076 30 LEGTSLPVGGENTRIVITGHRGL-PTATMFTNLDKLKKGDMLYLHVGNEVLTYQVTS 85 (136)
T ss_pred ccCCcCcccCCCCeEEEEecCCC-CCCCccCCHHHCCCCCEEEEEECCcEEEEEEEE
Confidence 3444555 345666788764 34679999999999999888743 455777764
No 38
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=34.59 E-value=2.9e+02 Score=25.24 Aligned_cols=28 Identities=11% Similarity=0.304 Sum_probs=12.2
Q ss_pred chhhhhhHHHHHHHHHHHHHHhhhhhhc
Q 012377 162 ASAISNTVKHLYDQLQSQIRTSYDRIRD 189 (465)
Q Consensus 162 AqSIvsnvKvLf~hLq~kL~~te~klke 189 (465)
...-+...+.-+.+++..+....+++.+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 183 (191)
T PF04156_consen 156 SREEVQELRSQLERLQENLQQLEEKIQE 183 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444433
No 39
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=34.55 E-value=3.9e+02 Score=31.74 Aligned_cols=58 Identities=16% Similarity=0.149 Sum_probs=42.9
Q ss_pred hccHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHhHHhhHHHHHHHHHHH
Q 012377 59 RMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNEAITSALNELA 116 (465)
Q Consensus 59 re~EEEI~~LRk~LadasvKE~QllnEKyvLErRiA~mRmAfDqqQqdlVdAASKaLS 116 (465)
.+.++.+..+|..+++.--.-+++.++...|++.|.+++...+.....+-+.--+-..
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~ 429 (1163)
T COG1196 372 EELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKE 429 (1163)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666788888888888888899999999999998888777766665544433333
No 40
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=34.01 E-value=83 Score=29.48 Aligned_cols=46 Identities=28% Similarity=0.286 Sum_probs=32.4
Q ss_pred hHHHHhhccHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHH
Q 012377 53 ELYSRARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRM 98 (465)
Q Consensus 53 ~L~~k~re~EEEI~~LRk~LadasvKE~QllnEKyvLErRiA~mRm 98 (465)
....+....++++..|...+..+.-...+|.+....||.||.+|+-
T Consensus 88 ~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~ 133 (221)
T PF04012_consen 88 EALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKS 133 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666677777777777777777777777777777777777663
No 41
>PRK00295 hypothetical protein; Provisional
Probab=33.95 E-value=1e+02 Score=25.11 Aligned_cols=31 Identities=32% Similarity=0.499 Sum_probs=21.4
Q ss_pred hHHHHHH--HHHHHhHHhhHHHHHHHHHHHHhhhhH
Q 012377 89 LERKVSE--LRMAIDEKQNEAITSALNELARRKGVL 122 (465)
Q Consensus 89 LErRiA~--mRmAfDqqQqdlVdAASKaLSyRQdii 122 (465)
+|.||.+ +|+|| |.+.|+.=++++..-|..|
T Consensus 3 ~e~Ri~~LE~kla~---qE~tie~Ln~~v~~Qq~~I 35 (68)
T PRK00295 3 LEERVTELESRQAF---QDDTIQALNDVLVEQQRVI 35 (68)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 5566664 36666 7788888888887777444
No 42
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=33.89 E-value=60 Score=30.34 Aligned_cols=42 Identities=12% Similarity=0.073 Sum_probs=25.5
Q ss_pred hhhHHHHhhccHHHHHHHHHHHHHHh----hhhhhhhhhhhhhHHHHHHHH
Q 012377 51 AMELYSRARMQKEEIHSLRQQIAVAC----LKELQLQNEKYTLERKVSELR 97 (465)
Q Consensus 51 ~~~L~~k~re~EEEI~~LRk~Ladas----vKE~QllnEKyvLErRiA~mR 97 (465)
|.+.|.+. ++|+..|++.|++|- +.| =..+...+|+||++|.
T Consensus 32 T~~G~~~L---~~El~~L~~~i~~Ar~~GDlsE--ak~~~~~~e~rI~~L~ 77 (160)
T PRK06342 32 TEAGLKAL---EDQLAQARAAYEAAQAIEDVNE--RRRQMARPLRDLRYLA 77 (160)
T ss_pred CHHHHHHH---HHHHHHHHHHHHHHHHCCChhH--HHHHHHHHHHHHHHHH
Confidence 45666555 578999988887773 344 1233344556665554
No 43
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=32.91 E-value=2.1e+02 Score=25.56 Aligned_cols=53 Identities=9% Similarity=0.187 Sum_probs=32.4
Q ss_pred hhhHHHHHHHHHHhhhc----CCCCCcccchhhhhhHHHHHHHHHHHHHHhhhhhhccc
Q 012377 137 DERYFFMSSMLGLLADY----GLWPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLT 191 (465)
Q Consensus 137 QERstFvSSLLpLLaEY----~LqP~V~DAqSIvsnvKvLf~hLq~kL~~te~klke~~ 191 (465)
....-|+..|||++.-+ ..-+.-.+..++..+++.++++|..-|. .-.+.++.
T Consensus 58 ~~~~~~~~~ll~v~D~l~~a~~~~~~~~~~~~~~~g~~~~~~~l~~~L~--~~Gv~~i~ 114 (165)
T PF01025_consen 58 YALEKFLKDLLPVLDNLERALEAAKSNEEEESLLEGLEMILKQLEDILE--KNGVEEIE 114 (165)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCC-SHHCTCHHHHHHHHHHHHHHHHHHH--TTTEEEE-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH--HCCCEecC
Confidence 34556888899988766 2222334556778888888888866663 33344444
No 44
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=32.70 E-value=1.2e+02 Score=25.23 Aligned_cols=63 Identities=19% Similarity=0.242 Sum_probs=32.8
Q ss_pred hhccHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhhh
Q 012377 58 ARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNEAITSALNELARRKGVLEENLKLAHDLKVAED 137 (465)
Q Consensus 58 ~re~EEEI~~LRk~LadasvKE~QllnEKyvLErRiA~mRmAfDqqQqdlVdAASKaLSyRQdiiEENiRLtyalq~aeQ 137 (465)
.|++|+.|..|+|- ..-|==||-.|. ++.. ...=..-++++.+||-|--.+...+.
T Consensus 2 lrEqe~~i~~L~KE--------------NF~LKLrI~fLe-----e~l~-----~~~~~~~~~~~keNieLKve~~~L~~ 57 (75)
T PF07989_consen 2 LREQEEQIDKLKKE--------------NFNLKLRIYFLE-----ERLQ-----KLGPESIEELLKENIELKVEVESLKR 57 (75)
T ss_pred HHHHHHHHHHHHHh--------------hhhHHHHHHHHH-----HHHH-----hcccccHHHHHHHHHHHHHHHHHHHH
Confidence 57889999888873 333323333332 2221 11123345667777776666655555
Q ss_pred hhHHHHH
Q 012377 138 ERYFFMS 144 (465)
Q Consensus 138 ERstFvS 144 (465)
|.--.-.
T Consensus 58 el~~~~~ 64 (75)
T PF07989_consen 58 ELQEKKK 64 (75)
T ss_pred HHHHHHH
Confidence 5444333
No 45
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=32.54 E-value=4.7e+02 Score=25.34 Aligned_cols=50 Identities=24% Similarity=0.278 Sum_probs=29.4
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHhHHhhHHHHHHHHHHHH
Q 012377 67 SLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNEAITSALNELAR 117 (465)
Q Consensus 67 ~LRk~LadasvKE~QllnEKyvLErRiA~mRmAfDqqQqdlVdAASKaLSy 117 (465)
+..+++....-.-.+++.|...|++.+.-|+. |-++.+..|++.-+.+..
T Consensus 39 ~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~-~~~~l~~~v~~q~~el~~ 88 (251)
T PF11932_consen 39 QSQKRIDQWDDEKQELLAEYRQLEREIENLEV-YNEQLERQVASQEQELAS 88 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 34445555555556666677777777777775 455555566655554443
No 46
>PF14048 MBD_C: C-terminal domain of methyl-CpG binding protein 2 and 3; PDB: 2L2L_B.
Probab=32.28 E-value=34 Score=29.85 Aligned_cols=19 Identities=26% Similarity=0.398 Sum_probs=17.1
Q ss_pred HhhccHHHHHHHHHHHHHH
Q 012377 57 RARMQKEEIHSLRQQIAVA 75 (465)
Q Consensus 57 k~re~EEEI~~LRk~Lada 75 (465)
-+|.||+-....|+|||+|
T Consensus 77 DIr~QE~rVk~aR~RLaeA 95 (96)
T PF14048_consen 77 DIRRQERRVKKARKRLAEA 95 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4589999999999999987
No 47
>PLN02542 fructose-1,6-bisphosphatase
Probab=32.18 E-value=61 Score=34.91 Aligned_cols=80 Identities=24% Similarity=0.424 Sum_probs=58.1
Q ss_pred CCCcceeecccccCCcccceeeeEEeccCCcccccccCCCcceeeecccccceeEEEeeecCCCCcccceeEEee-cCCC
Q 012377 319 TPGEKLLGCGYPVRGTTLCMFQWVRHLQDGTRHYIEGATNPEYVVTADDVDKLIAVECIPMDDQGRQGELVRRFA-NDQN 397 (465)
Q Consensus 319 ~pG~~L~acG~~inGTt~c~FqWVrhleDGs~~~IegA~~p~Y~vTADDvd~llAiec~Pmdd~~rkGelV~~~a-Nd~~ 397 (465)
-||+++.|.||-+=|.+.-. |=-+.+|...|.=....=+|++|.+++- +| ++ -++|+ |.+|
T Consensus 234 qpG~~qvAAGY~lYGpsT~L---Vlt~G~GV~~FtLDp~~geFvLt~~~i~-------IP--~~------g~iySiN~~N 295 (412)
T PLN02542 234 QPGSNLLAAGYCMYSSSVIF---VLTIGTGVFSFTLDPMYGEFVLTQENIQ-------IP--KA------GKIYSFNEGN 295 (412)
T ss_pred CcchhhhEEEEEEEccceEE---EEEECCCEEEEEEcCCCCeEEEeCCCee-------eC--CC------CcEeeeCccc
Confidence 39999999999998865322 2235778777765555667888887751 12 22 26788 7788
Q ss_pred ccccCccchHHHHHHhhhc
Q 012377 398 KIKCDLGMQSEIDAYISRG 416 (465)
Q Consensus 398 kI~cdp~mq~~I~~~~~~G 416 (465)
.=.+|+.++.-|+.....|
T Consensus 296 ~~~W~~~~~~yi~~~~~~~ 314 (412)
T PLN02542 296 YQLWDDKLKKYIDDLKDPG 314 (412)
T ss_pred ccccCHHHHHHHHHHhhCC
Confidence 8889999999999988644
No 48
>PRK11020 hypothetical protein; Provisional
Probab=32.15 E-value=78 Score=29.12 Aligned_cols=39 Identities=28% Similarity=0.449 Sum_probs=27.4
Q ss_pred HHHHHHHHHhhh-----hhhhhhhhhhhHHHHHHHHHHHhHHhhHHH
Q 012377 67 SLRQQIAVACLK-----ELQLQNEKYTLERKVSELRMAIDEKQNEAI 108 (465)
Q Consensus 67 ~LRk~LadasvK-----E~QllnEKyvLErRiA~mRmAfDqqQqdlV 108 (465)
.+|.+||.+... =+|+..|+..|+++|+.|+= +|.++|-
T Consensus 16 ~~~~Klaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~---~~~~~ls 59 (118)
T PRK11020 16 AIRHKLAAASLRGDAEKYAQFEKEKATLEAEIARLKE---VQSQKLS 59 (118)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 456666666543 36899999999999999983 4444443
No 49
>PRK14149 heat shock protein GrpE; Provisional
Probab=31.82 E-value=3.2e+02 Score=26.69 Aligned_cols=64 Identities=13% Similarity=0.122 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHhhhcC----CCCCcccchhhhhhHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCCCCCCCCCCCC
Q 012377 139 RYFFMSSMLGLLADYG----LWPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLTREGGTDAGAGSIDTDRHGVP 211 (465)
Q Consensus 139 RstFvSSLLpLLaEY~----LqP~V~DAqSIvsnvKvLf~hLq~kL~~te~klke~~~~pg~~~~~~~~~p~~~q~~ 211 (465)
..-|+..|||.|-.+. .-+...+..+|+.+|+-.+++|..-|. ..-|+++. | .| .++|+.|+.-
T Consensus 85 ~~~~~~~LLpVlDnLerAl~~~~~~~~~~~l~~Gv~mi~k~l~~vL~--k~GV~~I~--~---~G--~FDP~~HEAv 152 (191)
T PRK14149 85 YEKIALDLLPVIDALLGALKSAAEVDKESALTKGLELTMEKLHEVLA--RHGIEGIE--C---LE--EFDPNFHNAI 152 (191)
T ss_pred HHHHHHHHhhHHhHHHHHHhccccccchHHHHHHHHHHHHHHHHHHH--HCCCEEeC--C---CC--CCChHHhhee
Confidence 3568999999998872 223335567899999999998887774 33344443 2 12 3777666543
No 50
>PRK09293 fructose-1,6-bisphosphatase; Provisional
Probab=31.16 E-value=60 Score=33.50 Aligned_cols=76 Identities=22% Similarity=0.504 Sum_probs=56.5
Q ss_pred CCCcceeecccccCCcccceeeeEEeccCCcccccccCCCcceeeecccccceeEEEeeecCCCCcccceeEEee-cCCC
Q 012377 319 TPGEKLLGCGYPVRGTTLCMFQWVRHLQDGTRHYIEGATNPEYVVTADDVDKLIAVECIPMDDQGRQGELVRRFA-NDQN 397 (465)
Q Consensus 319 ~pG~~L~acG~~inGTt~c~FqWVrhleDGs~~~IegA~~p~Y~vTADDvd~llAiec~Pmdd~~rkGelV~~~a-Nd~~ 397 (465)
-||+++.|.||.+=|.+..+ |-.+.+|...|.=....-+|++|..++- +-+++ ++|+ |.+|
T Consensus 145 q~G~~~vaAgy~~YG~~t~l---v~t~g~gv~~ftld~~~g~f~l~~~~i~---------ip~~~------~~ys~n~~n 206 (327)
T PRK09293 145 QPGNNQVAAGYVLYGPSTML---VLTTGDGVHGFTLDPSLGEFVLTHENIR---------IPEDG------KEYAINEGN 206 (327)
T ss_pred CCchhheeEEEEEEcCceEE---EEEeCCCEEEEEEeCCCCeEEEecCCce---------eCCCC------CEEccCchh
Confidence 39999999999998876543 3444778776766666677888887654 22222 6899 8898
Q ss_pred ccccCccchHHHHHHh
Q 012377 398 KIKCDLGMQSEIDAYI 413 (465)
Q Consensus 398 kI~cdp~mq~~I~~~~ 413 (465)
-=.++|.++.-| .++
T Consensus 207 ~~~w~~~~~~yi-~~~ 221 (327)
T PRK09293 207 QRHWEPGVKKYI-ELL 221 (327)
T ss_pred hhhcCHHHHHHH-HHh
Confidence 889999999999 444
No 51
>PRK04406 hypothetical protein; Provisional
Probab=30.93 E-value=1.2e+02 Score=25.21 Aligned_cols=32 Identities=22% Similarity=0.489 Sum_probs=23.8
Q ss_pred hhHHHHHHH--HHHHhHHhhHHHHHHHHHHHHhhhhH
Q 012377 88 TLERKVSEL--RMAIDEKQNEAITSALNELARRKGVL 122 (465)
Q Consensus 88 vLErRiA~m--RmAfDqqQqdlVdAASKaLSyRQdii 122 (465)
.||.||.+| |+|| |.+.|+.=++++..-|..|
T Consensus 8 ~le~Ri~~LE~~lAf---QE~tIe~LN~~v~~Qq~~I 41 (75)
T PRK04406 8 QLEERINDLECQLAF---QEQTIEELNDALSQQQLLI 41 (75)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 467777754 6776 7889998888888777444
No 52
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.01 E-value=2.1e+02 Score=32.63 Aligned_cols=109 Identities=21% Similarity=0.230 Sum_probs=74.4
Q ss_pred cchhhhhHHHHhhccHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHhh-hhHhhh
Q 012377 47 QDREAMELYSRARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNEAITSALNELARRK-GVLEEN 125 (465)
Q Consensus 47 qd~~~~~L~~k~re~EEEI~~LRk~LadasvKE~QllnEKyvLErRiA~mRmAfDqqQqdlVdAASKaLSyRQ-diiEEN 125 (465)
.+|++..| .|||..|-|+|--+..|..||| |+||.=-=+ |..-.+-+|.-|. +|.-
T Consensus 251 e~p~netL-------k~e~dr~~kklk~~~~KQeqLL-------------rva~ylLlN-lAed~~~ElKMrrkniV~-- 307 (791)
T KOG1222|consen 251 EKPKNETL-------KEEIDRLNKKLKTAIRKQEQLL-------------RVAVYLLLN-LAEDISVELKMRRKNIVA-- 307 (791)
T ss_pred cCcchhhH-------HHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHH-HhhhhhHHHHHHHHhHHH--
Confidence 56666666 7999999999999999999985 444443222 2223344444333 3322
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHHhhhcCCCCCcccchhhhhhHHHHHHHHHHH
Q 012377 126 LKLAHDLKVAEDERYFFMSSMLGLLADYGLWPHVTNASAISNTVKHLYDQLQSQ 179 (465)
Q Consensus 126 iRLtyalq~aeQERstFvSSLLpLLaEY~LqP~V~DAqSIvsnvKvLf~hLq~k 179 (465)
-|--||+..--+..|.|++.|-=|+=|+=---|.-+--||.-+-.||.-=...
T Consensus 308 -mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h~d 360 (791)
T KOG1222|consen 308 -MLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQHPD 360 (791)
T ss_pred -HHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCCHH
Confidence 35566777777888999999999988877777777888887777777543333
No 53
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=29.98 E-value=3.1e+02 Score=27.67 Aligned_cols=47 Identities=21% Similarity=0.235 Sum_probs=30.8
Q ss_pred HHhhccHHHHHHHHHHHHHHhhhh---------hhhhhhhhhhHHHHHHHHHHHhH
Q 012377 56 SRARMQKEEIHSLRQQIAVACLKE---------LQLQNEKYTLERKVSELRMAIDE 102 (465)
Q Consensus 56 ~k~re~EEEI~~LRk~LadasvKE---------~QllnEKyvLErRiA~mRmAfDq 102 (465)
..++-.|.||.-+|+|++++..|= ..|-.|.+++++|++.|+=...+
T Consensus 59 ~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~ 114 (239)
T COG1579 59 NQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAE 114 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667888888888888775542 13555677777777766655443
No 54
>cd05827 Sortase_C_3 Sortase C (SrtC) or subfamily-3 sortases are membrane cysteine transpeptidases found in Gram-positive bacteria that anchor surface proteins to peptidoglycans of the bacterial cell wall envelope. This involves a transpeptidation reaction in which the surface protein substrate is cleaved at a conserved cell wall sorting signal and covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. Sortase C cleaves surface proteins at the LPXTG motif between Thr and Gly and catalyzes the formation of an amide bond between the carboxyl group of Thr and the amino group of cell-wall cross bridges. It is a narrow-range enzyme required for anchoring a few substrates. It plays a role in Streptococcus pneumoniae pathogenesis and is required in the assembly of pili on the surface of Corynebacterium diphtheriae. Sortase C is
Probab=29.28 E-value=64 Score=28.10 Aligned_cols=44 Identities=20% Similarity=0.256 Sum_probs=30.3
Q ss_pred CcceeecccccCCcccceeeeEEeccCCcccccccC-CCcceeeec
Q 012377 321 GEKLLGCGYPVRGTTLCMFQWVRHLQDGTRHYIEGA-TNPEYVVTA 365 (465)
Q Consensus 321 G~~L~acG~~inGTt~c~FqWVrhleDGs~~~IegA-~~p~Y~vTA 365 (465)
|+-..-.||... ....+|.++..|+.|..-+|... ....|-|++
T Consensus 44 ~~N~viaGH~~~-~~~~~F~~L~~l~~gd~i~l~t~~~~~~Y~V~~ 88 (131)
T cd05827 44 GTHSVITGHRGL-PNAKLFTDLDKLKKGDKFYIHVLGETLAYQVDQ 88 (131)
T ss_pred CCEEEEEeCCCC-CCCcccCCHHHCCCCCEEEEEECCeEEEEEEEE
Confidence 345777888732 23569999999999998777633 345666554
No 55
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=29.21 E-value=3.9e+02 Score=26.13 Aligned_cols=50 Identities=32% Similarity=0.419 Sum_probs=40.7
Q ss_pred hhccHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHhHHhhHH
Q 012377 58 ARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNEA 107 (465)
Q Consensus 58 ~re~EEEI~~LRk~LadasvKE~QllnEKyvLErRiA~mRmAfDqqQqdl 107 (465)
+....+|+..+|+.+.....+=..|.+.+..||++|++|.--++.+.++.
T Consensus 211 ~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~ 260 (312)
T PF00038_consen 211 LESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEY 260 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHH
Confidence 35567888899999988888888889999999999999987777655543
No 56
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=29.18 E-value=1.3e+02 Score=31.40 Aligned_cols=48 Identities=31% Similarity=0.275 Sum_probs=39.0
Q ss_pred hccHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHhHHhhH
Q 012377 59 RMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNE 106 (465)
Q Consensus 59 re~EEEI~~LRk~LadasvKE~QllnEKyvLErRiA~mRmAfDqqQqd 106 (465)
..|.|||.+|..+|+|.--|.-|+-.|+.-|=..++..+-+=.+-|-+
T Consensus 230 ~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aE 277 (306)
T PF04849_consen 230 RRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAE 277 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 557899999999999999999999999999988887776554433333
No 57
>PF08838 DUF1811: Protein of unknown function (DUF1811); InterPro: IPR014938 This entry consists uncharacterised bacterial proteins. Some of the proteins are annotated as being transcriptional regulators (see Q4MQL7 from SWISSPROT, Q65MA2 from SWISSPROT). The structure of one of the proteins has revealed a beta-barrel like structure with helix-turn-helix like motif. ; PDB: 2YXY_A 1SF9_A.
Probab=29.17 E-value=60 Score=29.12 Aligned_cols=33 Identities=30% Similarity=0.402 Sum_probs=25.1
Q ss_pred ccHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHH
Q 012377 60 MQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVS 94 (465)
Q Consensus 60 e~EEEI~~LRk~LadasvKE~QllnEKyvLErRiA 94 (465)
|-++||..|+.+-..| ...-+.||--|||||++
T Consensus 11 EL~~Ei~~L~ekarKA--Eq~G~~nE~aV~erK~~ 43 (102)
T PF08838_consen 11 ELRQEIARLKEKARKA--EQLGIVNEYAVYERKII 43 (102)
T ss_dssp HHHHHHHHHHHHHHHH--HHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--HHcCCccHHHHHHHHHH
Confidence 4568888898887544 45568899999999985
No 58
>PRK14160 heat shock protein GrpE; Provisional
Probab=28.83 E-value=5.4e+02 Score=25.51 Aligned_cols=63 Identities=10% Similarity=0.176 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHhhhc--CCCCCcccchhhhhhHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCCCCCCCCCCCC
Q 012377 139 RYFFMSSMLGLLADY--GLWPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLTREGGTDAGAGSIDTDRHGVP 211 (465)
Q Consensus 139 RstFvSSLLpLLaEY--~LqP~V~DAqSIvsnvKvLf~hLq~kL~~te~klke~~~~pg~~~~~~~~~p~~~q~~ 211 (465)
..-|+..|||.+--+ -|.- ..+..+|+.+|+-.+++|..=|. ..-|+++. | .| -++|+.|+.-
T Consensus 110 ~e~~~~~LLpVlDnLerAl~~-~~~~~~l~~Gv~mi~kql~~vL~--k~GVe~I~--~---~G--~FDP~~HEAv 174 (211)
T PRK14160 110 CEDVLKELLPVLDNLERAAAV-EGSVEDLKKGIEMTVKQFKTSLE--KLGVEEIS--T---EG--EFDPNLHNAV 174 (211)
T ss_pred HHHHHHHHhhHHhHHHHHHhc-ccchhHHHHHHHHHHHHHHHHHH--HCCCEEeC--C---CC--CCChHHhcee
Confidence 356899999998877 2321 23456799999999998887774 33444443 2 12 3677666533
No 59
>PRK14154 heat shock protein GrpE; Provisional
Probab=28.70 E-value=5.7e+02 Score=25.31 Aligned_cols=51 Identities=10% Similarity=0.194 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHhhhc--CCC--C-CcccchhhhhhHHHHHHHHHHHHHHhhhhhhccc
Q 012377 139 RYFFMSSMLGLLADY--GLW--P-HVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLT 191 (465)
Q Consensus 139 RstFvSSLLpLLaEY--~Lq--P-~V~DAqSIvsnvKvLf~hLq~kL~~te~klke~~ 191 (465)
..-|+..|||.+-.+ -|. + .-.+..+|+.+|+-.+++|..-|. ..-|+++.
T Consensus 101 ~e~~~~~LLpVlDnLeRAL~~~~~~~~~~~~l~eGvemi~k~l~~vL~--k~GVe~I~ 156 (208)
T PRK14154 101 SKQLITDLLPVADSLIHGLESPASEDPQVKSMRDGMSLTLDLLHNTLA--KHGVQVIN 156 (208)
T ss_pred HHHHHHHHhhHHhHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHH--HCCCEEec
Confidence 346888999988777 232 1 223467899999999999988874 45556654
No 60
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=28.58 E-value=1.5e+02 Score=26.47 Aligned_cols=20 Identities=10% Similarity=0.139 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHhhhcCCCCC
Q 012377 139 RYFFMSSMLGLLADYGLWPH 158 (465)
Q Consensus 139 RstFvSSLLpLLaEY~LqP~ 158 (465)
-.++.+.|+-+|+.+|+.|=
T Consensus 94 ~~~~~~~l~~~L~~~Gv~~i 113 (165)
T PF01025_consen 94 LEMILKQLEDILEKNGVEEI 113 (165)
T ss_dssp HHHHHHHHHHHHHTTTEEEE
T ss_pred HHHHHHHHHHHHHHCCCEec
Confidence 44666778888888888653
No 61
>PRK11281 hypothetical protein; Provisional
Probab=28.52 E-value=3.2e+02 Score=33.00 Aligned_cols=71 Identities=21% Similarity=0.390 Sum_probs=51.0
Q ss_pred hhHHHHHHHHHHH---hHHhhHH------H----------------HHHHHHHHHhhhhHhhhhh-------hhhhhhhh
Q 012377 88 TLERKVSELRMAI---DEKQNEA------I----------------TSALNELARRKGVLEENLK-------LAHDLKVA 135 (465)
Q Consensus 88 vLErRiA~mRmAf---DqqQqdl------V----------------dAASKaLSyRQdiiEENiR-------Ltyalq~a 135 (465)
.|.++||++||.- .||+..| + ++..+-|.-|+++|++=++ +.=.||.+
T Consensus 357 ~l~~~iAdlrl~~f~~~q~~~~l~~~~~y~~~l~~~~~~~~~~~~~~~l~~ll~~r~~LL~~l~~~~~~~l~~~~~l~~~ 436 (1113)
T PRK11281 357 GLADRIADLRLEQFEINQQRDALFQPDAYIDKLEAGHKSEVTDEVRDALLQLLDERRELLDQLNKQLNNQLNLAINLQLN 436 (1113)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3889999999763 2222111 1 2344678889999988433 45578888
Q ss_pred hhhhHHHHHHHHHHhhhcCCCCC
Q 012377 136 EDERYFFMSSMLGLLADYGLWPH 158 (465)
Q Consensus 136 eQERstFvSSLLpLLaEY~LqP~ 158 (465)
+|.-..-+.+|=-.|.|.-+|=+
T Consensus 437 q~Ql~~~~~~l~~~L~~~lfWv~ 459 (1113)
T PRK11281 437 QQQLLSVSDSLQSTLTQQIFWVN 459 (1113)
T ss_pred HHHHHHHHHHHHHHHHHhhhccC
Confidence 89988889999999999988844
No 62
>PRK11281 hypothetical protein; Provisional
Probab=27.97 E-value=1.8e+02 Score=34.94 Aligned_cols=60 Identities=27% Similarity=0.320 Sum_probs=44.4
Q ss_pred hhhhHHHHhhccHHHHHHHHHHHHHHhh------------hh---------hhhhhhhhhhHHHHHHHHHHHhHHhhHHH
Q 012377 50 EAMELYSRARMQKEEIHSLRQQIAVACL------------KE---------LQLQNEKYTLERKVSELRMAIDEKQNEAI 108 (465)
Q Consensus 50 ~~~~L~~k~re~EEEI~~LRk~Ladasv------------KE---------~QllnEKyvLErRiA~mRmAfDqqQqdlV 108 (465)
.+.++|.+++.++++...|+++|++|-- |+ ..-++. ..||.+++...-.-.+.|.+|-
T Consensus 67 ~tL~~L~qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~~~~~~~Sl-~qLEq~L~q~~~~Lq~~Q~~La 145 (1113)
T PRK11281 67 QTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSL-RQLESRLAQTLDQLQNAQNDLA 145 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccccccccccccccCH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 5678889999999999999998887531 21 111122 3499999999988888888887
Q ss_pred HH
Q 012377 109 TS 110 (465)
Q Consensus 109 dA 110 (465)
++
T Consensus 146 ~~ 147 (1113)
T PRK11281 146 EY 147 (1113)
T ss_pred HH
Confidence 76
No 63
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=27.25 E-value=2.7e+02 Score=27.18 Aligned_cols=42 Identities=29% Similarity=0.414 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHhHH
Q 012377 62 KEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEK 103 (465)
Q Consensus 62 EEEI~~LRk~LadasvKE~QllnEKyvLErRiA~mRmAfDqq 103 (465)
|.||..||+.|.+.+..=+++.-|.-.|...+.++|.-|...
T Consensus 53 e~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e 94 (312)
T PF00038_consen 53 EEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEE 94 (312)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHH
Confidence 678888888888888877888888888888888887777765
No 64
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=26.75 E-value=6.5e+02 Score=28.30 Aligned_cols=109 Identities=21% Similarity=0.245 Sum_probs=65.9
Q ss_pred chhhhhHHHHhhccHHHHH--HHHHHHHHHhh-hhhhhhhhhhhhHHHHHHHHHHHh---HHhhHHHHHHHHHHHHhhhh
Q 012377 48 DREAMELYSRARMQKEEIH--SLRQQIAVACL-KELQLQNEKYTLERKVSELRMAID---EKQNEAITSALNELARRKGV 121 (465)
Q Consensus 48 d~~~~~L~~k~re~EEEI~--~LRk~Ladasv-KE~QllnEKyvLErRiA~mRmAfD---qqQqdlVdAASKaLSyRQdi 121 (465)
+|-++.|+.|+++-|+|.. ..|-+..+.-+ |...-|.+-|.+=+ --...+ +.|-++++.|.|++. +=+
T Consensus 83 sPgE~~l~~Kl~eLE~e~k~d~v~~khn~~I~~k~g~~L~~v~~~~~----~~~~~~~~e~~q~~~LekAl~~~~--~i~ 156 (508)
T PF00901_consen 83 SPGEQGLQRKLKELEDEQKEDEVREKHNKKIIEKFGNDLEKVYKFMK----GQEKVEEEEENQIEILEKALKSYG--KIV 156 (508)
T ss_pred CHhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhHhhhhhHHHHHHHHHHHHHHHH--HHH
Confidence 4678899999999988875 34433333222 22222222222211 111222 346677777777654 444
Q ss_pred Hhhhh---hhhhhhhhhhhhhHHHHHHHHHHhhhcCCCCCcccchhhhhhHHHHHHHHHHHHH
Q 012377 122 LEENL---KLAHDLKVAEDERYFFMSSMLGLLADYGLWPHVTNASAISNTVKHLYDQLQSQIR 181 (465)
Q Consensus 122 iEENi---RLtyalq~aeQERstFvSSLLpLLaEY~LqP~V~DAqSIvsnvKvLf~hLq~kL~ 181 (465)
-+||- ||+-|||....+|| .|=..||+..+.-|+.|+.-+.
T Consensus 157 ~~E~~~l~~L~~AL~kE~~~Rt-------------------~dE~~mv~~yr~ki~aL~~aIe 200 (508)
T PF00901_consen 157 KEENKQLDRLARALQKESRERT-------------------QDERKMVEEYRQKIDALKNAIE 200 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc-------------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 44554 57899999999987 3666777777777887776654
No 65
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=26.49 E-value=3.9e+02 Score=25.88 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=11.6
Q ss_pred hhhhhhhHHHHHHHHHHHhHHhhHH
Q 012377 83 QNEKYTLERKVSELRMAIDEKQNEA 107 (465)
Q Consensus 83 lnEKyvLErRiA~mRmAfDqqQqdl 107 (465)
..|...|+..+..|.--.+.|++.+
T Consensus 62 ~~e~e~L~~~~~~l~~~v~~q~~el 86 (251)
T PF11932_consen 62 EREIENLEVYNEQLERQVASQEQEL 86 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555544444444443
No 66
>PTZ00421 coronin; Provisional
Probab=26.48 E-value=1.3e+02 Score=32.46 Aligned_cols=28 Identities=32% Similarity=0.382 Sum_probs=22.6
Q ss_pred hHHHHhhccHHHHHHHHHHHHHHhhhhhhhh
Q 012377 53 ELYSRARMQKEEIHSLRQQIAVACLKELQLQ 83 (465)
Q Consensus 53 ~L~~k~re~EEEI~~LRk~LadasvKE~Qll 83 (465)
+|-.++|.+++||..+|+-|-+ ||.+.+
T Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 484 (493)
T PTZ00421 457 ALSEKLRTQHEEIKRCREALQK---KESIVM 484 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 8888999999999999987754 666554
No 67
>PLN02262 fructose-1,6-bisphosphatase
Probab=26.36 E-value=77 Score=33.14 Aligned_cols=76 Identities=16% Similarity=0.324 Sum_probs=53.9
Q ss_pred CCcceeecccccCCcccceeeeEEeccCCcccccccCCCcceeeecccccceeEEEeeecCCCCcccceeEEee-cCCCc
Q 012377 320 PGEKLLGCGYPVRGTTLCMFQWVRHLQDGTRHYIEGATNPEYVVTADDVDKLIAVECIPMDDQGRQGELVRRFA-NDQNK 398 (465)
Q Consensus 320 pG~~L~acG~~inGTt~c~FqWVrhleDGs~~~IegA~~p~Y~vTADDvd~llAiec~Pmdd~~rkGelV~~~a-Nd~~k 398 (465)
||+++.|.||-+=|.+....=.+ .+|...|.=....=+|++|..++- +-+ --++|+ |.+|-
T Consensus 158 ~G~~qvAAGY~lYG~~T~lV~t~---g~gv~~Ftld~~~gef~lt~~~i~---------ip~------~~~~ys~N~~n~ 219 (340)
T PLN02262 158 PGKEMVAAGYCMYGSSCTLVLST---GGGVNGFTLDPSLGEFILTHPDIK---------IPK------KGKIYSVNEGNA 219 (340)
T ss_pred chHhhhheeeeeecCceEEEEEe---CCCeeEEEEcCCCCEEEEeCCCce---------eCC------CCCEeccCccch
Confidence 99999999999999876654433 567665554444556777766551 112 226899 66777
Q ss_pred cccCccchHHHHHHh
Q 012377 399 IKCDLGMQSEIDAYI 413 (465)
Q Consensus 399 I~cdp~mq~~I~~~~ 413 (465)
=.+++.++.-|+...
T Consensus 220 ~~w~~~~~~yi~~~~ 234 (340)
T PLN02262 220 KNWDGPTAKYVEKCK 234 (340)
T ss_pred hhcCHHHHHHHHHHh
Confidence 789999999999776
No 68
>PRK04325 hypothetical protein; Provisional
Probab=26.31 E-value=1.6e+02 Score=24.32 Aligned_cols=32 Identities=25% Similarity=0.522 Sum_probs=22.7
Q ss_pred hHHHHHH--HHHHHhHHhhHHHHHHHHHHHHhhhhHh
Q 012377 89 LERKVSE--LRMAIDEKQNEAITSALNELARRKGVLE 123 (465)
Q Consensus 89 LErRiA~--mRmAfDqqQqdlVdAASKaLSyRQdiiE 123 (465)
+|.||.+ +|+|| |++.|+.=++++..-|..|.
T Consensus 7 ~e~Ri~~LE~klAf---QE~tIe~LN~vv~~Qq~~I~ 40 (74)
T PRK04325 7 MEDRITELEIQLAF---QEDLIDGLNATVARQQQTLD 40 (74)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 4555554 46676 78889988888887775553
No 69
>PRK14148 heat shock protein GrpE; Provisional
Probab=26.27 E-value=6.2e+02 Score=24.72 Aligned_cols=51 Identities=12% Similarity=0.141 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHhhhc----CCCCCcccchhhhhhHHHHHHHHHHHHHHhhhhhhccc
Q 012377 139 RYFFMSSMLGLLADY----GLWPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLT 191 (465)
Q Consensus 139 RstFvSSLLpLLaEY----~LqP~V~DAqSIvsnvKvLf~hLq~kL~~te~klke~~ 191 (465)
..-|+..|||.+--+ +.-+.-.++.+|+.+|+-.+++|..=|. ..-|+++.
T Consensus 89 ~~~~~~~LLpV~DnlerAl~~~~~~~~~~~l~~Gv~mi~k~l~~vL~--k~Gv~~I~ 143 (195)
T PRK14148 89 IEKFAKELLPVIDSIEQALKHEVKLEEAIAMKEGIELTAKMLVDILK--KNGVEELD 143 (195)
T ss_pred HHHHHHHHhhHHhHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHH--HCCCEEeC
Confidence 346889999998877 2234334567899999999999988774 44455554
No 70
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=26.00 E-value=1.2e+03 Score=27.80 Aligned_cols=145 Identities=17% Similarity=0.185 Sum_probs=72.2
Q ss_pred CcccccchhhhhHHHHhhccHHHHHHHHHHHHHHhhhhhh--hhhhhhhhHHHHHHHHHHHhHHhhHHHHH-HHHH--HH
Q 012377 42 NFISFQDREAMELYSRARMQKEEIHSLRQQIAVACLKELQ--LQNEKYTLERKVSELRMAIDEKQNEAITS-ALNE--LA 116 (465)
Q Consensus 42 n~~~~qd~~~~~L~~k~re~EEEI~~LRk~LadasvKE~Q--llnEKyvLErRiA~mRmAfDqqQqdlVdA-ASKa--LS 116 (465)
+.-.++|.++++. .....++.+.+|=..+-.-.+++.+ +.+.+...++-+-.|=|--+..++-+-+. +.|. +.
T Consensus 474 ~l~e~~~~~~~~~--~~~~~~~~l~~llee~~~~~~~~~~~~l~~~~~~k~~~~~q~~~~~~~~~~~~~~~l~~kke~i~ 551 (809)
T KOG0247|consen 474 GLREIPDLPTFEE--QDKNDKETLDQLLEELEKRILLRTKEILQNNKSLKEKECRQKLMNAQLESQMLSSQLNDKKEQIE 551 (809)
T ss_pred cccccCCchhHhh--hhhhhHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3444778888776 4556666666554444444444444 44455555554444444433333222111 1110 11
Q ss_pred HhhhhHhhh--hhhhhhhhhhhhhhHHH---------------------HHHHHHHhhhcCCCCCcccchhhhhhHHHHH
Q 012377 117 RRKGVLEEN--LKLAHDLKVAEDERYFF---------------------MSSMLGLLADYGLWPHVTNASAISNTVKHLY 173 (465)
Q Consensus 117 yRQdiiEEN--iRLtyalq~aeQERstF---------------------vSSLLpLLaEY~LqP~V~DAqSIvsnvKvLf 173 (465)
.=.+.+|++ =+|+|.-+-+-+|+..+ +++.=+.++- ++|-++..+.-. .|+.--
T Consensus 552 q~re~~~~~~k~~l~~e~~~~i~E~~~~~~~i~~l~~el~eq~~~~~~~~~~~~~~~~~--~~~~~~~t~~~~-~v~~~~ 628 (809)
T KOG0247|consen 552 QLRDEIERLKKENLTTEYSIEILESTEYEEEIEALDQELEEQKMELQQKFSEKKKAMAK--VRGILANTSPEC-SVAAKL 628 (809)
T ss_pred HHHHHHHHHhhhhhhhhhhhhhhhcchhhhhhHHHHHHHHhhhHHHHhhccchhHHHhh--hccccCCCchhh-hHHHHH
Confidence 111222221 23555555555555533 3333333332 333333333322 566666
Q ss_pred HHHHHHHHHhhhhhhccc
Q 012377 174 DQLQSQIRTSYDRIRDLT 191 (465)
Q Consensus 174 ~hLq~kL~~te~klke~~ 191 (465)
..+|+||....+|||..+
T Consensus 629 ~~~~~~l~~~~e~l~~~~ 646 (809)
T KOG0247|consen 629 LELQSKLWFKDEKLKHLT 646 (809)
T ss_pred HHHHHHhcccHHHHHHhh
Confidence 779999999999999987
No 71
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=25.99 E-value=9.9e+02 Score=26.96 Aligned_cols=13 Identities=15% Similarity=0.304 Sum_probs=6.1
Q ss_pred EEeccCCcccccc
Q 012377 342 VRHLQDGTRHYIE 354 (465)
Q Consensus 342 VrhleDGs~~~Ie 354 (465)
+.+|--|....+.
T Consensus 1087 ~~~lS~g~~~~~~ 1099 (1179)
T TIGR02168 1087 LSLLSGGEKALTA 1099 (1179)
T ss_pred ccccCccHHHHHH
Confidence 3345555544433
No 72
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=25.98 E-value=1e+02 Score=25.74 Aligned_cols=36 Identities=22% Similarity=0.273 Sum_probs=26.5
Q ss_pred cHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHH
Q 012377 61 QKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSEL 96 (465)
Q Consensus 61 ~EEEI~~LRk~LadasvKE~QllnEKyvLErRiA~m 96 (465)
..+++..|+++|.++--+-..+.+++.+++.+++.|
T Consensus 68 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~L 103 (104)
T PF13600_consen 68 DSPELKELEEELEALEDELAALQDEIQALEAQIAFL 103 (104)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455777777777777777777778888888887755
No 73
>cd00354 FBPase Fructose-1,6-bisphosphatase, an enzyme that catalyzes the hydrolysis of fructose-1,6-biphosphate into fructose-6-phosphate and is critical in gluconeogenesis pathway. The alignment model also includes chloroplastic FBPases and sedoheptulose-1,7-biphosphatases that play a role in pentose phosphate pathway (Calvin cycle).
Probab=25.80 E-value=96 Score=31.90 Aligned_cols=79 Identities=20% Similarity=0.394 Sum_probs=55.5
Q ss_pred CCCcceeecccccCCcccceeeeEEeccCCcccccccCCCcceeeecccccceeEEEeeecCCCCcccceeEEee-cCCC
Q 012377 319 TPGEKLLGCGYPVRGTTLCMFQWVRHLQDGTRHYIEGATNPEYVVTADDVDKLIAVECIPMDDQGRQGELVRRFA-NDQN 397 (465)
Q Consensus 319 ~pG~~L~acG~~inGTt~c~FqWVrhleDGs~~~IegA~~p~Y~vTADDvd~llAiec~Pmdd~~rkGelV~~~a-Nd~~ 397 (465)
-||+++.|.||-+=|.+.... =.+.+|...|.=....=+|++|..++ . +.+++ ++|+ |.+|
T Consensus 138 q~G~~~vAAgy~lYGp~T~lv---~t~g~gv~~ftld~~~g~f~lt~~~~------~---ip~~~------~~ys~n~~n 199 (315)
T cd00354 138 QPGRNQVAAGYALYGPSTMLV---LTLGQGVHGFTLDPSLGEFILTHPNV------K---IPKKG------KIYSINEGN 199 (315)
T ss_pred CcchhhheEEEEEEcCceEEE---EEeCCceEEEEEcCCCCeEEEecCCc------e---eCCCC------CEECCCCcc
Confidence 489999999999998765543 33457776666555455788776653 1 12222 6898 6566
Q ss_pred ccccCccchHHHHHHhhh
Q 012377 398 KIKCDLGMQSEIDAYISR 415 (465)
Q Consensus 398 kI~cdp~mq~~I~~~~~~ 415 (465)
.=.+++.++..|+..+..
T Consensus 200 ~~~w~~~~~~yi~~~~~~ 217 (315)
T cd00354 200 YRYWDEPVKKYIDDCKAG 217 (315)
T ss_pred hhcCCHHHHHHHHHHhcc
Confidence 667999999999988763
No 74
>PRK14143 heat shock protein GrpE; Provisional
Probab=25.53 E-value=7e+02 Score=25.06 Aligned_cols=43 Identities=23% Similarity=0.414 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHhhhcC-----CCCCcccchhhhhhHHHHHHHHHHHHH
Q 012377 139 RYFFMSSMLGLLADYG-----LWPHVTNASAISNTVKHLYDQLQSQIR 181 (465)
Q Consensus 139 RstFvSSLLpLLaEY~-----LqP~V~DAqSIvsnvKvLf~hLq~kL~ 181 (465)
..-|+..|||.+--+. +.|.-.++.+|+.+++-++++|..-|.
T Consensus 116 ~~~~~~~lLpV~DnLerAl~~~~~~~~~~~~l~~Gve~i~k~l~~~L~ 163 (238)
T PRK14143 116 KCNTLSEILPVVDNFERARQQLKPEGEEAQALHRSYQGLYKQLVDVLK 163 (238)
T ss_pred HHHHHHHHHHHHhHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 4568999999987762 335444568899999999988876663
No 75
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=25.33 E-value=4.8e+02 Score=23.17 Aligned_cols=66 Identities=17% Similarity=0.181 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHhhhhHhhhhhh
Q 012377 63 EEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNEAITSALNELARRKGVLEENLKL 128 (465)
Q Consensus 63 EEI~~LRk~LadasvKE~QllnEKyvLErRiA~mRmAfDqqQqdlVdAASKaLSyRQdiiEENiRL 128 (465)
++|..||+.+..+-..=.++..+.......+...+-.+..+...|-..-+.+-..+.|+-+-|=-|
T Consensus 59 ~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lL 124 (132)
T PF07926_consen 59 KELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLL 124 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666666666666666666666666666666666666665555333
No 76
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=25.30 E-value=2.4e+02 Score=22.61 Aligned_cols=23 Identities=22% Similarity=0.453 Sum_probs=20.9
Q ss_pred hhHHHHHHHHHHHhHHhhHHHHH
Q 012377 88 TLERKVSELRMAIDEKQNEAITS 110 (465)
Q Consensus 88 vLErRiA~mRmAfDqqQqdlVdA 110 (465)
.+|+-|.+||-.|-++.|=++||
T Consensus 23 ~ME~Eieelr~RY~~KRqPIldA 45 (49)
T PF11629_consen 23 EMEQEIEELRQRYQAKRQPILDA 45 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccHHHH
Confidence 47899999999999999999887
No 77
>PRK14154 heat shock protein GrpE; Provisional
Probab=25.25 E-value=5.2e+02 Score=25.57 Aligned_cols=108 Identities=13% Similarity=0.137 Sum_probs=51.1
Q ss_pred ccccchhhhhH-HHHhhccHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHhhhhH
Q 012377 44 ISFQDREAMEL-YSRARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNEAITSALNELARRKGVL 122 (465)
Q Consensus 44 ~~~qd~~~~~L-~~k~re~EEEI~~LRk~LadasvKE~QllnEKyvLErRiA~mRmAfDqqQqdlVdAASKaLSyRQdii 122 (465)
+--+.|+-..+ +..+.+.+++|..|+++++++-=+=+.++.|-.-+-|| .....+++.+.|...+..-==-+
T Consensus 39 ~~~~~~~~~~~~~~~~~~l~~el~~le~e~~elkd~~lRl~ADfeNyRKR-------~~kE~e~~~~~a~e~~~~~LLpV 111 (208)
T PRK14154 39 SQEMEPHREGLEFPSREKLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKR-------IEREKADIIKFGSKQLITDLLPV 111 (208)
T ss_pred ccccCcccccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhH
Confidence 33444555555 44455556777777777776543333333333333333 33444445555443333222223
Q ss_pred hhhhhhhhhhhhhhhh--------hHHHHHHHHHHhhhcCCCCC
Q 012377 123 EENLKLAHDLKVAEDE--------RYFFMSSMLGLLADYGLWPH 158 (465)
Q Consensus 123 EENiRLtyalq~aeQE--------RstFvSSLLpLLaEY~LqP~ 158 (465)
=+|+..+-+-.....+ --+-...|+-.|+.+||.+-
T Consensus 112 lDnLeRAL~~~~~~~~~~~~l~eGvemi~k~l~~vL~k~GVe~I 155 (208)
T PRK14154 112 ADSLIHGLESPASEDPQVKSMRDGMSLTLDLLHNTLAKHGVQVI 155 (208)
T ss_pred HhHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHHCCCEEe
Confidence 3455444221101111 11224567778888888763
No 78
>KOG3083 consensus Prohibitin [Posttranslational modification, protein turnover, chaperones]
Probab=24.87 E-value=69 Score=32.76 Aligned_cols=41 Identities=29% Similarity=0.524 Sum_probs=29.3
Q ss_pred HhhHHHHH-HHHHHHHh---hhhHhhhhhhhh------------hhhhhhhh--hHHHH
Q 012377 103 KQNEAITS-ALNELARR---KGVLEENLKLAH------------DLKVAEDE--RYFFM 143 (465)
Q Consensus 103 qQqdlVdA-ASKaLSyR---QdiiEENiRLty------------alq~aeQE--RstFv 143 (465)
-|.++|++ .+++|..| -+++-+++-+|| +-|+|||| |.-||
T Consensus 141 TqRe~vS~~v~~~lt~rA~~Fgl~LddvsiThltfGkEFt~AvE~KQVAQQEAErarFv 199 (271)
T KOG3083|consen 141 TQRELVSRQVSNDLTERAATFGLILDDVSITHLTFGKEFTEAVEAKQVAQQEAERARFV 199 (271)
T ss_pred hhhHHHHHHHHHHHHHHHHhhCeeechhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777776 67778777 466777777765 56888875 67775
No 79
>PRK14141 heat shock protein GrpE; Provisional
Probab=24.83 E-value=5.2e+02 Score=25.55 Aligned_cols=103 Identities=22% Similarity=0.219 Sum_probs=0.0
Q ss_pred chhhhhHHHHhhccHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHhhhhHhhhhh
Q 012377 48 DREAMELYSRARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNEAITSALNELARRKGVLEENLK 127 (465)
Q Consensus 48 d~~~~~L~~k~re~EEEI~~LRk~LadasvKE~QllnEKyvLErRiA~mRmAfDqqQqdlVdAASKaLSyRQdiiEENiR 127 (465)
|+|..+-=...-+.|++|..|++.+.++--+=+.++.|-.-+-||.+ +...++..-|...+..-==-+=+|+-
T Consensus 23 ~~~~~~~~~~~~~~~~~i~~le~e~~elkd~~lR~~Ae~eN~RKR~~-------kE~e~~~~~a~~~~~~dLLpViDnLe 95 (209)
T PRK14141 23 DREAKPYEMEDDPEPDPLEALKAENAELKDRMLRLAAEMENLRKRTQ-------RDVADARAYGIAGFARDMLSVSDNLR 95 (209)
T ss_pred ccccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhhHhHHH
Q ss_pred hhhh-------------hhhhhhhhHHHHHHHHHHhhhcCCCC
Q 012377 128 LAHD-------------LKVAEDERYFFMSSMLGLLADYGLWP 157 (465)
Q Consensus 128 Ltya-------------lq~aeQERstFvSSLLpLLaEY~LqP 157 (465)
.+-+ ++.--+=-.+-.+.|+-.|..|||.+
T Consensus 96 rAl~~~~~~~~~~~~~~~~~l~eGv~mi~k~l~~vLek~GV~~ 138 (209)
T PRK14141 96 RALDAIPAEARAAADAGLKALIEGVEMTERAMLNALERHGVKK 138 (209)
T ss_pred HHHhccccccccccchhHHHHHHHHHHHHHHHHHHHHHCCCEE
No 80
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=23.98 E-value=1.8e+02 Score=27.98 Aligned_cols=107 Identities=20% Similarity=0.306 Sum_probs=57.4
Q ss_pred cccchhhhhHHHHhhccHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHH-----HhHHhhHHHHHHHHHHHHhh
Q 012377 45 SFQDREAMELYSRARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMA-----IDEKQNEAITSALNELARRK 119 (465)
Q Consensus 45 ~~qd~~~~~L~~k~re~EEEI~~LRk~LadasvKE~QllnEKyvLErRiA~mRmA-----fDqqQqdlVdAASKaLSyRQ 119 (465)
-+.+.|-.+|-.-...-||||..||.=|+. | ||+.++||=. +.+-+|++-..
T Consensus 25 ~LsEeE~eeLr~EL~KvEeEI~TLrqvL~a---K-----------er~~~eLKrkLGit~l~elkqnlskg--------- 81 (162)
T PF04201_consen 25 GLSEEEREELRSELAKVEEEIQTLRQVLAA---K-----------ERHCAELKRKLGITPLSELKQNLSKG--------- 81 (162)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-----------HHhHHHHHHHHCCchHHHHHHHHHHH---------
Confidence 344455566666666679999999998874 3 5666666632 44555555322
Q ss_pred hhHhhhhhhhhhhhhhhhhhHHHHHHHHHHhhhcCCCCCcccchhhhhhHH--HHHHHHHHHHHHhhhhhhccc
Q 012377 120 GVLEENLKLAHDLKVAEDERYFFMSSMLGLLADYGLWPHVTNASAISNTVK--HLYDQLQSQIRTSYDRIRDLT 191 (465)
Q Consensus 120 diiEENiRLtyalq~aeQERstFvSSLLpLLaEY~LqP~V~DAqSIvsnvK--vLf~hLq~kL~~te~klke~~ 191 (465)
..|++-+.+.+ .|-.+..++++=--+... .+-+| -.|+-+.+|+......+|.--
T Consensus 82 ---~~~vq~S~aY~--gqKTsaa~s~~g~~i~~K------------l~dmrnS~tFKSfEeKVg~a~~~vK~kV 138 (162)
T PF04201_consen 82 ---WHDVQDSNAYK--GQKTSAAFSSVGSAISRK------------LGDMRNSPTFKSFEEKVGSAYSNVKSKV 138 (162)
T ss_pred ---hHhhhchhHHH--HHHHHHHHHHHHHHHHHH------------HHHHhcchHHHhHHHHhccchhhhhhcc
Confidence 13555555554 333344443332222211 00011 247777777777566555443
No 81
>PRK14164 heat shock protein GrpE; Provisional
Probab=23.91 E-value=5.7e+02 Score=25.46 Aligned_cols=61 Identities=18% Similarity=0.301 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHhhhcCCCCCcccchhhhhh-HHHHHHHHHHHHHHhhhhhhccccCCCCCCCCCCCCCCCCCC
Q 012377 139 RYFFMSSMLGLLADYGLWPHVTNASAISNT-VKHLYDQLQSQIRTSYDRIRDLTREGGTDAGAGSIDTDRHGV 210 (465)
Q Consensus 139 RstFvSSLLpLLaEY~LqP~V~DAqSIvsn-vKvLf~hLq~kL~~te~klke~~~~pg~~~~~~~~~p~~~q~ 210 (465)
..-|+..|||.|-.+.+-=. +.+.... +|.+.++|..-|. ...|+++. ..| ..++|+.|+-
T Consensus 119 ~~~~~~~LLpVlDnLerAl~---~~~~~~g~l~~i~~~l~~vL~--k~Gve~I~-~~G-----e~FDP~~HEA 180 (218)
T PRK14164 119 KAGVATDLLPILDDLDLAEQ---HGDLNEGPLKAFSDKLTNVLA--GLKVEKFG-EEG-----DAFDPEIHEA 180 (218)
T ss_pred HHHHHHHHhhHHhHHHHHHh---cccccccHHHHHHHHHHHHHH--HCCCEEeC-CCC-----CCCChhHhhe
Confidence 35688888888776632100 1111222 5666666655553 33444443 223 1355666653
No 82
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=23.81 E-value=4e+02 Score=23.99 Aligned_cols=78 Identities=24% Similarity=0.253 Sum_probs=29.8
Q ss_pred hHHHHhhccHHHHHHHHHHHHHHhhhhhhhhhhhhhhH--HHHHHHHHHHhHHhhHHHHHHHHHHHHhhhhHhhhhhhhh
Q 012377 53 ELYSRARMQKEEIHSLRQQIAVACLKELQLQNEKYTLE--RKVSELRMAIDEKQNEAITSALNELARRKGVLEENLKLAH 130 (465)
Q Consensus 53 ~L~~k~re~EEEI~~LRk~LadasvKE~QllnEKyvLE--rRiA~mRmAfDqqQqdlVdAASKaLSyRQdiiEENiRLty 130 (465)
+|-.|++-|++++.+++.+|.+..-+=.+| .|+.++ .||+++|--.-+-++-++.-++| ++|+. +..|
T Consensus 34 dL~~R~~~Q~~~~~~~~~~l~~i~~~l~~L--~~~~~~~~~rl~~~r~r~~~L~hR~l~v~~~-----~eilr---~~g~ 103 (141)
T PF13874_consen 34 DLKKRVEAQEEEIAQHRERLKEINDKLEEL--QKHDLETSARLEEARRRHQELSHRLLRVLRK-----QEILR---NRGY 103 (141)
T ss_dssp ------------HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH---H---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH---HcCC
Confidence 888999999999999999998766553333 444443 56666665555555555443333 22322 2345
Q ss_pred hhhhhhhhhH
Q 012377 131 DLKVAEDERY 140 (465)
Q Consensus 131 alq~aeQERs 140 (465)
+|+..|.+..
T Consensus 104 ~l~~eEe~L~ 113 (141)
T PF13874_consen 104 ALSPEEEELR 113 (141)
T ss_dssp ----------
T ss_pred CCCHHHHHHH
Confidence 6655555433
No 83
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=23.43 E-value=3.4e+02 Score=28.39 Aligned_cols=76 Identities=20% Similarity=0.320 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHH-----HhHHhhHHHHHHHHHHHHh-------hhhHhhhhhhh
Q 012377 62 KEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMA-----IDEKQNEAITSALNELARR-------KGVLEENLKLA 129 (465)
Q Consensus 62 EEEI~~LRk~LadasvKE~QllnEKyvLErRiA~mRmA-----fDqqQqdlVdAASKaLSyR-------QdiiEENiRLt 129 (465)
.+++..||++|.+.--.=+.||+|...+=++|+...-+ ||.++.+-|=....+...- +.|.++=|+..
T Consensus 3 ~~~L~~lR~~ID~ID~eIl~LL~~R~~~~~~I~~~K~~~g~pi~dp~RE~~vl~~~~~~~~g~l~~~~i~~If~~I~~~S 82 (360)
T PRK12595 3 NEELEQLRKEIDEINLQLLELLSKRGELVQEIGEEKTKQGTKRYDPVREREMLDMIAENNEGPFEDSTIQHLFKEIFKAS 82 (360)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 45688899999988888889999999999999999987 7777766554444332211 34444555555
Q ss_pred hhhhhhhh
Q 012377 130 HDLKVAED 137 (465)
Q Consensus 130 yalq~aeQ 137 (465)
-.+|..+.
T Consensus 83 r~~Q~~~~ 90 (360)
T PRK12595 83 LELQEDDN 90 (360)
T ss_pred HHHHHHhh
Confidence 55564433
No 84
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=23.20 E-value=3.3e+02 Score=28.57 Aligned_cols=18 Identities=11% Similarity=0.065 Sum_probs=8.7
Q ss_pred hhccccccccCcccccCC
Q 012377 24 VNRHKIETHLAPTKQKED 41 (465)
Q Consensus 24 l~Rh~~e~~~~~~~~~e~ 41 (465)
...|...|-+..-+-.|+
T Consensus 61 ~vq~~~~G~v~~i~V~eG 78 (457)
T TIGR01000 61 KIQSTSNNAIKENYLKEN 78 (457)
T ss_pred EEEcCCCcEEEEEEcCCC
Confidence 455665554444433343
No 85
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=23.14 E-value=90 Score=21.48 Aligned_cols=12 Identities=33% Similarity=0.573 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHH
Q 012377 63 EEIHSLRQQIAV 74 (465)
Q Consensus 63 EEI~~LRk~Lad 74 (465)
+|+..||.+|.|
T Consensus 1 ~E~~rlr~rI~d 12 (23)
T PF04508_consen 1 REMNRLRNRISD 12 (23)
T ss_pred ChHHHHHHHHHH
Confidence 367777777765
No 86
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=23.08 E-value=1.2e+03 Score=27.77 Aligned_cols=25 Identities=24% Similarity=0.235 Sum_probs=10.8
Q ss_pred chhhhhhHHHHHHHHHHHHHHhhhh
Q 012377 162 ASAISNTVKHLYDQLQSQIRTSYDR 186 (465)
Q Consensus 162 AqSIvsnvKvLf~hLq~kL~~te~k 186 (465)
|=.--..++.-|.-|.+++..+...
T Consensus 968 Aiee~e~~~~r~~~l~~~~~dl~~a 992 (1163)
T COG1196 968 AIEEYEEVEERYEELKSQREDLEEA 992 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444455555554444433
No 87
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=23.00 E-value=9e+02 Score=29.71 Aligned_cols=121 Identities=18% Similarity=0.233 Sum_probs=86.0
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhHHHHHHH
Q 012377 67 SLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNEAITSALNELARRKGVLEENLKLAHDLKVAEDERYFFMSSM 146 (465)
Q Consensus 67 ~LRk~LadasvKE~QllnEKyvLErRiA~mRmAfDqqQqdlVdAASKaLSyRQdiiEENiRLtyalq~aeQERstFvSSL 146 (465)
.+|+--..++.-|.-+-+-|.-=|||+.++-=-++..-+. +++.+|.+--|++-.| +|.-...+.++|++..=+.|
T Consensus 763 ~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~-~e~~~~~~ek~~~e~e---~l~lE~e~l~~e~~~~k~~l 838 (1174)
T KOG0933|consen 763 ALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQR-AEESSKELEKRENEYE---RLQLEHEELEKEISSLKQQL 838 (1174)
T ss_pred HHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 3444445566677777777777788888877777665554 4677788877766443 56666677888888888888
Q ss_pred HHHhhhc-CCCCCcccchhhhhhHHHHHHHHHHHHHHhhhhhhccc
Q 012377 147 LGLLADY-GLWPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLT 191 (465)
Q Consensus 147 LpLLaEY-~LqP~V~DAqSIvsnvKvLf~hLq~kL~~te~klke~~ 191 (465)
-.+...- .|--.+.++..=|..+..=++.+|.+|.....++++.-
T Consensus 839 ~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~d 884 (1174)
T KOG0933|consen 839 EQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDID 884 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhh
Confidence 7777666 56666677777777777778888888887777766653
No 88
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=22.75 E-value=1.5e+02 Score=26.65 Aligned_cols=33 Identities=27% Similarity=0.373 Sum_probs=28.6
Q ss_pred HHHhhhhhhhhhhhhhhHHHHHHHHHHHhHHhh
Q 012377 73 AVACLKELQLQNEKYTLERKVSELRMAIDEKQN 105 (465)
Q Consensus 73 adasvKE~QllnEKyvLErRiA~mRmAfDqqQq 105 (465)
..-..||..+..+...||.+|.+|+...++||+
T Consensus 101 ~ke~~Ke~~~~~~l~~L~~~i~~L~~~~~~~~~ 133 (134)
T PF07047_consen 101 RKEAKKEEELQERLEELEERIEELEEQVEKQQE 133 (134)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345678888999999999999999999998885
No 89
>PF04011 LemA: LemA family; InterPro: IPR007156 The members of this family are related to the LemA protein P71452 from SWISSPROT. The exact molecular function of this protein is uncertain. It is predicted to be a transmembrane protein with an extracellular N terminus [].; PDB: 2ETD_A.
Probab=22.68 E-value=5.2e+02 Score=23.89 Aligned_cols=48 Identities=25% Similarity=0.361 Sum_probs=31.2
Q ss_pred hhhhhhhhHHHHHHHHHHhhhc-CCCCCcccchhhhhhHHHHHHHHHHHHHHhhhhhhccc
Q 012377 132 LKVAEDERYFFMSSMLGLLADY-GLWPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLT 191 (465)
Q Consensus 132 lq~aeQERstFvSSLLpLLaEY-~LqP~V~DAqSIvsnvKvLf~hLq~kL~~te~klke~~ 191 (465)
++.++.+-+.-++.|+=+...| .|+.. ..|++|+.+|..+|++|....
T Consensus 90 ~~~~~~~l~~al~~l~~~~e~yP~Lka~------------~~~~~l~~~l~~~E~~I~~aR 138 (186)
T PF04011_consen 90 FQQAEAELSQALSRLLAVVENYPELKAD------------ENFQQLMAQLEETENRIAAAR 138 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-HHHHH-------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccchh------------HHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666677776555555 22221 249999999999999987665
No 90
>PF06034 DUF919: Nucleopolyhedrovirus protein of unknown function (DUF919); InterPro: IPR009265 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf29. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several short baculovirus proteins of unknown function.
Probab=22.67 E-value=1.9e+02 Score=23.83 Aligned_cols=42 Identities=26% Similarity=0.406 Sum_probs=28.2
Q ss_pred hccHHHHHHHHHHHHHHhhhhhhh------hhhhhhhHHHHHHHHHHH
Q 012377 59 RMQKEEIHSLRQQIAVACLKELQL------QNEKYTLERKVSELRMAI 100 (465)
Q Consensus 59 re~EEEI~~LRk~LadasvKE~Ql------lnEKyvLErRiA~mRmAf 100 (465)
+.|=.+|.+.+++|.-.+--+-.| -+|-+.+++|+.+||+-|
T Consensus 7 ~~QLd~I~~~K~~l~ik~~H~Ekl~kitK~p~El~~i~~kl~~~R~~F 54 (62)
T PF06034_consen 7 TQQLDEINQMKRQLTIKSQHWEKLKKITKNPKELQEIEKKLQELRQNF 54 (62)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHH
Confidence 445566777777766555443333 245577999999999987
No 91
>PRK14140 heat shock protein GrpE; Provisional
Probab=22.45 E-value=7.3e+02 Score=24.18 Aligned_cols=43 Identities=16% Similarity=0.218 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHhhhc--CC--CCCcccchhhhhhHHHHHHHHHHHHH
Q 012377 139 RYFFMSSMLGLLADY--GL--WPHVTNASAISNTVKHLYDQLQSQIR 181 (465)
Q Consensus 139 RstFvSSLLpLLaEY--~L--qP~V~DAqSIvsnvKvLf~hLq~kL~ 181 (465)
..-|+..|||.|--+ -| -|.-.+..+|+.+|+-.+++|..=|.
T Consensus 86 ~~~~~~~LLpvlDnLerAl~~~~~~~~~~~i~~Gv~mi~k~l~~~L~ 132 (191)
T PRK14140 86 AQSLASDLLPALDNFERALQIEADDEQTKSLLKGVEMVHRQLLEALK 132 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHHH
Confidence 456899999998877 22 24444567888898888888877664
No 92
>PF14612 Ino80_Iec3: IEC3 subunit of the Ino80 complex, chromatin re-modelling
Probab=22.02 E-value=2.7e+02 Score=28.23 Aligned_cols=40 Identities=25% Similarity=0.341 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHhHHhh---HHHHHHHHHHHHhhhhHhhhhhh
Q 012377 89 LERKVSELRMAIDEKQN---EAITSALNELARRKGVLEENLKL 128 (465)
Q Consensus 89 LErRiA~mRmAfDqqQq---dlVdAASKaLSyRQdiiEENiRL 128 (465)
.-||.+.||+.||+.=. +|+---.|+..-=+.|-|||-||
T Consensus 4 ~kkKy~Kmri~Fd~~m~~~~~l~~~e~~~~~~~kRl~~end~L 46 (232)
T PF14612_consen 4 WKKKYRKMRIKFDQKMKESEELFREEQKAEDTSKRLAEENDQL 46 (232)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34889999999998643 35555556666666678888865
No 93
>PF09545 RE_AccI: AccI restriction endonuclease; InterPro: IPR019054 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry includes the restriction endonuclease AccI, which recognises and cleaves the double-stranded sequence GT^MKAC.
Probab=21.93 E-value=6.6e+02 Score=26.91 Aligned_cols=82 Identities=21% Similarity=0.270 Sum_probs=53.4
Q ss_pred HHHHHhHHhhHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhHHHHHHHHHH----hhhcCCC-CCcccchhhhhhHH
Q 012377 96 LRMAIDEKQNEAITSALNELARRKGVLEENLKLAHDLKVAEDERYFFMSSMLGL----LADYGLW-PHVTNASAISNTVK 170 (465)
Q Consensus 96 mRmAfDqqQqdlVdAASKaLSyRQdiiEENiRLtyalq~aeQERstFvSSLLpL----LaEY~Lq-P~V~DAqSIvsnvK 170 (465)
|+-|.+..||.++.-| |--||.|+|| +.--|. +--|+.|+.-|+.+ +++++++ |+.+-.+- .-.++
T Consensus 148 ~~e~m~~r~q~~~~~a---~~~~~~il~~---~~~~L~--~p~~~~yi~lins~t~~t~~~~df~~psw~~~~~-l~e~~ 218 (366)
T PF09545_consen 148 MEEAMQTRTQKFIEIA---LKTRDKILEE---FLDVLP--HPWRKKYIALINSITDETYALADFRRPSWSSDQR-LIEVM 218 (366)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHH---HHhhcC--CcchhHHHHHHHHHhHhhhhhhccCCCCccchHH-HHHHH
Confidence 5667889999999876 5579999994 333343 23456665555544 3444554 44433333 34688
Q ss_pred HHHHHHHHHHHHhhhh
Q 012377 171 HLYDQLQSQIRTSYDR 186 (465)
Q Consensus 171 vLf~hLq~kL~~te~k 186 (465)
.||+.|+.+++.+..|
T Consensus 219 ~l~K~lK~~ik~l~kr 234 (366)
T PF09545_consen 219 NLFKMLKTAIKELQKR 234 (366)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 9999999998877764
No 94
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=21.75 E-value=2.3e+02 Score=22.93 Aligned_cols=32 Identities=22% Similarity=0.484 Sum_probs=19.2
Q ss_pred hHHHHHHH--HHHHhHHhhHHHHHHHHHHHHhhhhHh
Q 012377 89 LERKVSEL--RMAIDEKQNEAITSALNELARRKGVLE 123 (465)
Q Consensus 89 LErRiA~m--RmAfDqqQqdlVdAASKaLSyRQdiiE 123 (465)
||.||.+| |+|| |.+.|+.-++.+..-|.-|+
T Consensus 2 le~Ri~~LE~~la~---qe~~ie~Ln~~v~~Qq~~I~ 35 (69)
T PF04102_consen 2 LEERIEELEIKLAF---QEDTIEELNDVVTEQQRQID 35 (69)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 45555543 5555 66777776666666555554
No 95
>TIGR01801 CM_A chorismate mutase domain of gram positive AroA protein. This model represents a small clade of chorismate mutase domains N-terminally fused to the first enzyme in the chorismate pathway, 2-dehydro-3-deoxyphosphoheptanoate aldolase (DAHP synthetase, AroA) which are found in some gram positive species and Deinococcus. Only in Deinococcus, where this domain is the sole CM domain in the genome can a trusted assignment of function be made. In the other species there is at least one other trusted CM domain present. The similarity between the Deinococcus gene and the others in this clade is sufficiently strong (~44% identity), that the whole clade can be trusted to be functional. The possibility exists, however, that in the gram positive species the fusion to the first enzyme in the pathway has evolved a separate, regulatory role.
Probab=21.64 E-value=3.1e+02 Score=23.90 Aligned_cols=83 Identities=18% Similarity=0.314 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHH-----HhHHhhHHHHHHHHHHH-------HhhhhHhhhhhhh
Q 012377 62 KEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMA-----IDEKQNEAITSALNELA-------RRKGVLEENLKLA 129 (465)
Q Consensus 62 EEEI~~LRk~LadasvKE~QllnEKyvLErRiA~mRmA-----fDqqQqdlVdAASKaLS-------yRQdiiEENiRLt 129 (465)
++++..||++|.+.--+=+.|++|.-.+=.+|+...-+ ||..+..-|=....+.. +=..|..+=|...
T Consensus 3 ~~~L~~lR~~ID~ID~eIl~LL~eR~~~~~~Ig~~K~~~~~~i~dp~RE~~vl~~~~~~~~g~l~~~~i~~If~~I~~~S 82 (102)
T TIGR01801 3 NQSLEDLRAEVDQLNRQILALISRRGEVVAQIGHAKSAQGPNHYDPAREEQMLNELIKINPGPFPTATIKGIFKEIFKAS 82 (102)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 45688899999888888888999999999999998876 67666655544333322 1122333344444
Q ss_pred hhhhhhhhhhHHHHH
Q 012377 130 HDLKVAEDERYFFMS 144 (465)
Q Consensus 130 yalq~aeQERstFvS 144 (465)
-.+|....+.-..||
T Consensus 83 r~~Q~~~~~~~~~~~ 97 (102)
T TIGR01801 83 LALQESNDKKQLLVS 97 (102)
T ss_pred HHHHHhccccceeee
Confidence 445555544444444
No 96
>PF15516 BpuSI_N: BpuSI N-terminal domain
Probab=21.62 E-value=1.2e+02 Score=29.06 Aligned_cols=33 Identities=18% Similarity=0.457 Sum_probs=26.1
Q ss_pred eeeeEEeccCCcccccccCCCcceeeecccccc-eeEEEee
Q 012377 338 MFQWVRHLQDGTRHYIEGATNPEYVVTADDVDK-LIAVECI 377 (465)
Q Consensus 338 ~FqWVrhleDGs~~~IegA~~p~Y~vTADDvd~-llAiec~ 377 (465)
+||||.|.--||+ -|++++--..-++ +|+||+-
T Consensus 31 ~yeviHH~~vgsi-------~~DFvl~~k~t~k~vL~iEvK 64 (159)
T PF15516_consen 31 QYEVIHHEPVGSI-------VPDFVLRRKSTNKYVLIIEVK 64 (159)
T ss_pred ceeEEEeccCCcc-------ccceEEEecCCceEEEEEEEe
Confidence 6999999877776 5889888777776 4688873
No 97
>cd05829 Sortase_E Sortase E (SrtE) is a membrane transpeptidase found in gram-positive bacteria that cleaves surface proteins at a cell sorting motif and catalyzes a transpeptidation reaction in which the surface protein substrate is covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. The function of Sortase E is unknown. In two different sortase families, the N-terminus either functions as both a signal peptide for secretion and a stop-transfer signal for membrane anchoring, or it contains a signal peptide only and the C-terminus serves as a membrane anchor. Most gram-positive bacteria contain more than one sortase and it is thought that the different sortases anchor different surface protein classes. The sortase domain is a modified beta-barrel flanked by two (SrtA) or three (SrtB) short alpha-helices.
Probab=21.62 E-value=2.5e+02 Score=25.19 Aligned_cols=51 Identities=18% Similarity=0.232 Sum_probs=36.5
Q ss_pred cccCCC--cceeecccccCCcccceeeeEEeccCCcccccccC--CCcceeeecc
Q 012377 316 GEATPG--EKLLGCGYPVRGTTLCMFQWVRHLQDGTRHYIEGA--TNPEYVVTAD 366 (465)
Q Consensus 316 Gda~pG--~~L~acG~~inGTt~c~FqWVrhleDGs~~~IegA--~~p~Y~vTAD 366 (465)
+-+.|| +...-.||....-....|-.+..|+-|..-+|..+ ....|.||.-
T Consensus 42 ~~~~pG~~Gn~viaGH~~~~g~~~~F~~L~~l~~GD~I~v~~~~g~~~~Y~V~~~ 96 (144)
T cd05829 42 GGPKPGEKGTAVLAGHVDSRGGPAVFFRLGDLRKGDKVEVTRADGQTATFRVDRV 96 (144)
T ss_pred CCCCCCCCCCEEEEEecCCCCCChhhcchhcCCCCCEEEEEECCCCEEEEEEeEE
Confidence 344444 34556788755225688999999999999999984 3488888763
No 98
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=21.47 E-value=5.6e+02 Score=24.65 Aligned_cols=116 Identities=17% Similarity=0.260 Sum_probs=0.0
Q ss_pred hhccHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhhh
Q 012377 58 ARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNEAITSALNELARRKGVLEENLKLAHDLKVAED 137 (465)
Q Consensus 58 ~re~EEEI~~LRk~LadasvKE~QllnEKyvLErRiA~mRmAfDqqQqdlVdAASKaLSyRQdiiEENiRLtyalq~aeQ 137 (465)
.+.||.-...++.+--|....=+.+++ .|-..|++||---.+....+ .++..||-||+=.|+.|++
T Consensus 4 ~~~He~af~~iK~YYndIT~~NL~lIk---sLKeei~emkk~e~~~~k~m-----------~ei~~eN~~L~epL~~a~~ 69 (201)
T PF13851_consen 4 MKNHEKAFQEIKNYYNDITLNNLELIK---SLKEEIAEMKKKEERNEKLM-----------AEISQENKRLSEPLKKAEE 69 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHhHHHHHHHH
Q ss_pred hhHHHHHHHHHHhhhc-CCCCCcccchhhhhhHHHHHHHHHHHHHHhhhhhhccc
Q 012377 138 ERYFFMSSMLGLLADY-GLWPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLT 191 (465)
Q Consensus 138 ERstFvSSLLpLLaEY-~LqP~V~DAqSIvsnvKvLf~hLq~kL~~te~klke~~ 191 (465)
| +..|=--|+.| .-.=...++.+.+.-+..=++.|+|+-..++.++...+
T Consensus 70 e----~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle 120 (201)
T PF13851_consen 70 E----VEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLE 120 (201)
T ss_pred H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 99
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=21.45 E-value=20 Score=30.31 Aligned_cols=23 Identities=22% Similarity=0.463 Sum_probs=15.8
Q ss_pred cceeeccc---ccCCcccceeeeEEe
Q 012377 322 EKLLGCGY---PVRGTTLCMFQWVRH 344 (465)
Q Consensus 322 ~~L~acG~---~inGTt~c~FqWVrh 344 (465)
--|..||+ =.+...++.|+|||+
T Consensus 64 yvLKV~G~~EyL~g~~~L~~y~yIr~ 89 (106)
T PF00794_consen 64 YVLKVCGREEYLLGDHPLSQYEYIRQ 89 (106)
T ss_dssp EEEEETTSSEEE-SSS-GGGBHHHHH
T ss_pred EEEEecCceEEeeCCeeeeccHHHHH
Confidence 44666664 357788999999996
No 100
>PRK14162 heat shock protein GrpE; Provisional
Probab=21.15 E-value=7.8e+02 Score=24.04 Aligned_cols=50 Identities=12% Similarity=0.189 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhhhcC--CC--CCcccchhhhhhHHHHHHHHHHHHHHhhhhhhccc
Q 012377 140 YFFMSSMLGLLADYG--LW--PHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLT 191 (465)
Q Consensus 140 stFvSSLLpLLaEY~--Lq--P~V~DAqSIvsnvKvLf~hLq~kL~~te~klke~~ 191 (465)
.-|+..|||.+--+. |. |.-.+..+|+.+|+-.+++|..=|. ..-|+++.
T Consensus 89 ~~~~~~LLpV~DnLerAl~~~~~~~~~~~l~~Gvemi~k~l~~vL~--~~GV~~I~ 142 (194)
T PRK14162 89 QSLAKDVLPAMDNLERALAVKADDEAAKQLKKGVQMTLDHLVKALK--DHGVTEIK 142 (194)
T ss_pred HHHHHHHhhHHhHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHH--HCCCEEeC
Confidence 458899999988773 22 3323457899999999999988774 44555554
No 101
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=20.85 E-value=25 Score=41.35 Aligned_cols=56 Identities=25% Similarity=0.430 Sum_probs=44.7
Q ss_pred cceeecc---cccCCcccceeeeEEeccCCcccccccCCCcceee-ecccccceeEEEeeecCCCCc
Q 012377 322 EKLLGCG---YPVRGTTLCMFQWVRHLQDGTRHYIEGATNPEYVV-TADDVDKLIAVECIPMDDQGR 384 (465)
Q Consensus 322 ~~L~acG---~~inGTt~c~FqWVrhleDGs~~~IegA~~p~Y~v-TADDvd~llAiec~Pmdd~~r 384 (465)
--|+.|| |-.+-+-+|.|||||. -+.....|..++ +--+.+.++--||-++|.-.|
T Consensus 258 yvLqV~GRdEYl~gd~pL~qfqyIrs-------cl~~~~~P~lvl~~~~~l~~~r~~~~~~~~~~~~ 317 (1076)
T KOG0904|consen 258 YVLQVCGRDEYLLGDYPLIQFQYIRS-------CLMNGREPHLVLVTPSSLDSMRPEEWPLIDSTTK 317 (1076)
T ss_pred eEEEecCceeeeeCCcchHHHHHHHH-------HHhcCCCCceEEeehhhHHHhccccccccccccC
Confidence 4578888 7788999999999984 466667788864 666788888889998888765
No 102
>TIGR01791 CM_archaeal chorismate mutase, archaeal type. This model represents a clade of archaeal chorismate mutases. Chorismate mutase catalyzes the conversion of chorismate into prephenate which is subsequently converted into either phenylalanine or tyrosine. In Sulfolobus this gene is found as a fusion with prephenate dehydrogenase (although the non-TIGR annotation contains a typographical error indicating it as a dehydratase) which is the next enzyme in the tyrosine biosynthesis pathway. The Archaeoglobus gene contains an N-terminal prephenate dehydrogenase domain and a C-terminal prephenate dehydratase domain followed by a regulatory amino acid-binding ACT domain. The Thermoplasma volcanium gene is adjacent to prephenate dehydratase.
Probab=20.63 E-value=3.4e+02 Score=22.06 Aligned_cols=51 Identities=29% Similarity=0.439 Sum_probs=31.4
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHH-----HhHHhhHHHHHHHHHHHH
Q 012377 67 SLRQQIAVACLKELQLQNEKYTLERKVSELRMA-----IDEKQNEAITSALNELAR 117 (465)
Q Consensus 67 ~LRk~LadasvKE~QllnEKyvLErRiA~mRmA-----fDqqQqdlVdAASKaLSy 117 (465)
.||++|.+.--.=+.|+++...|=++|+.++.+ ||..+...|=+...+++.
T Consensus 3 ~lR~~Id~iD~~i~~Ll~~R~~l~~~i~~~K~~~g~~i~d~~RE~~v~~~~~~~~~ 58 (83)
T TIGR01791 3 ELRQEIEEIDKSILDLIEKRIKIARKIGEIKHNNGLPITDEEREERVIERLRNTAR 58 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHH
Confidence 466666666666666777777777777777775 555555544444444443
No 103
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=20.63 E-value=7.1e+02 Score=32.21 Aligned_cols=105 Identities=20% Similarity=0.263 Sum_probs=62.3
Q ss_pred hhhhhhhhhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHhhhhHh-hhhhhhhhhhhhhhhhHHHHHHHHHHhhhc-CCCC
Q 012377 80 LQLQNEKYTLERKVSELRMAIDEKQNEAITSALNELARRKGVLE-ENLKLAHDLKVAEDERYFFMSSMLGLLADY-GLWP 157 (465)
Q Consensus 80 ~QllnEKyvLErRiA~mRmAfDqqQqdlVdAASKaLSyRQdiiE-ENiRLtyalq~aeQERstFvSSLLpLLaEY-~LqP 157 (465)
..|..||..|++-+++|-...++-..+- +-+..+-..+| .+.=|.--+....+=++.|..-..++-.|. .|.=
T Consensus 1206 ~~lekek~~lq~e~~~l~~ev~~~~~~k-----~~~e~~~k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~ 1280 (1930)
T KOG0161|consen 1206 AKLEKEKSDLQREIADLAAELEQLSSEK-----KDLEKKDKKLEAQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSR 1280 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh-----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhh
Confidence 3455566666666666655555443332 22333333344 222222223333334456777788888888 7778
Q ss_pred CcccchhhhhhHHHHHHHHHHHHHHhhhhhhc
Q 012377 158 HVTNASAISNTVKHLYDQLQSQIRTSYDRIRD 189 (465)
Q Consensus 158 ~V~DAqSIvsnvKvLf~hLq~kL~~te~klke 189 (465)
++.++.+..+.+-.+-..|..+|..+.+.+-+
T Consensus 1281 ~lee~e~~~~~~~r~~~~~~~qle~~k~qle~ 1312 (1930)
T KOG0161|consen 1281 QLEEAEAKLSALSRDKQALESQLEELKRQLEE 1312 (1930)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888776655533
No 104
>PRK00736 hypothetical protein; Provisional
Probab=20.26 E-value=2.3e+02 Score=23.14 Aligned_cols=31 Identities=26% Similarity=0.397 Sum_probs=20.4
Q ss_pred hHHHHHH--HHHHHhHHhhHHHHHHHHHHHHhhhhH
Q 012377 89 LERKVSE--LRMAIDEKQNEAITSALNELARRKGVL 122 (465)
Q Consensus 89 LErRiA~--mRmAfDqqQqdlVdAASKaLSyRQdii 122 (465)
+|.||.+ +|+|| |.+.|+.=++++..-|..|
T Consensus 3 ~e~Ri~~LE~klaf---qe~tie~Ln~~v~~Qq~~i 35 (68)
T PRK00736 3 AEERLTELEIRVAE---QEKTIEELSDQLAEQWKTV 35 (68)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 4455553 36666 7788888888877666544
No 105
>PF07743 HSCB_C: HSCB C-terminal oligomerisation domain; InterPro: IPR009073 This entry represents the C-terminal oligomerisation domain found in HscB (heat shock cognate protein B), which is also known as HSC20 (20K heat shock cognate protein). HscB acts as a co-chaperone to regulate the ATPase activity and peptide-binding specificity of the molecular chaperone HscA, also known as HSC66 (HSP70 class). HscB proteins contain two domains, an N-terminal J-domain, which is involved in interactions with HscA, connected by a short loop to the C-terminal oligomerisation domain; the two domains make contact through a hydrophobic interface. The core of the oligomerisation domain is thought to bind and target proteins to HscA and consists of an open, three-helical bundle []. HscB, along with HscA, has been shown to play a role in the biogenesis of iron-sulphur proteins.; GO: 0006457 protein folding; PDB: 1FPO_C 3BVO_B 3HHO_A 3UO2_B 3UO3_B.
Probab=20.18 E-value=4.5e+02 Score=20.89 Aligned_cols=32 Identities=38% Similarity=0.426 Sum_probs=21.2
Q ss_pred HHHHHHHHhHHhhHHHHHHHHHHHHhhhhHhh
Q 012377 93 VSELRMAIDEKQNEAITSALNELARRKGVLEE 124 (465)
Q Consensus 93 iA~mRmAfDqqQqdlVdAASKaLSyRQdiiEE 124 (465)
++.|.-+|+.+.-+.+-.+...|.|-+.+.++
T Consensus 44 ~~~l~~~f~~~d~~~A~~~~~kLky~~kl~~~ 75 (78)
T PF07743_consen 44 IKELAEAFDAKDWEEAKEALRKLKYLQKLLEE 75 (78)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCcHHHHHHHHHHHHHHHHHHHH
Confidence 45566788777766666667777777776654
Done!