Query 012377
Match_columns 465
No_of_seqs 46 out of 48
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 08:16:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012377.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012377hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dix_A Plectin-related protein 99.9 7.2E-25 2.5E-29 206.4 14.4 145 312-464 15-164 (230)
2 3oja_B Anopheles plasmodium-re 56.1 3.5 0.00012 41.2 1.2 27 165-191 552-578 (597)
3 3o0z_A RHO-associated protein 53.8 90 0.0031 28.7 10.0 54 52-105 16-83 (168)
4 3he5_B Synzip2; heterodimeric 52.8 25 0.00085 26.7 5.1 40 66-105 6-45 (52)
5 2dfs_A Myosin-5A; myosin-V, in 50.4 62 0.0021 36.5 10.0 29 161-189 1020-1048(1080)
6 2q6q_A Spindle POLE BODY compo 49.8 26 0.0009 28.6 5.1 29 50-78 4-39 (74)
7 3mq7_A Bone marrow stromal ant 47.7 16 0.00054 32.4 3.8 41 56-96 71-111 (121)
8 3oja_B Anopheles plasmodium-re 45.5 66 0.0022 32.1 8.4 20 82-101 521-540 (597)
9 4e81_A Chaperone protein DNAK; 43.4 43 0.0015 30.8 6.2 14 61-74 120-133 (219)
10 3tnu_B Keratin, type II cytosk 39.2 62 0.0021 27.4 6.2 48 58-105 31-78 (129)
11 2dfs_A Myosin-5A; myosin-V, in 37.6 1.2E+02 0.004 34.4 9.6 18 57-74 985-1002(1080)
12 3iyk_A VP5; icosahedral virus; 37.1 3E+02 0.01 29.4 11.9 110 48-182 89-207 (526)
13 2gtv_X CM, chorismate mutase; 36.6 1.3E+02 0.0044 25.2 7.6 75 64-138 4-103 (104)
14 1i84_S Smooth muscle myosin he 35.9 90 0.0031 35.1 8.4 13 62-74 856-868 (1184)
15 2l2l_B Methyl-CPG-binding doma 35.5 21 0.00071 25.8 2.2 21 57-77 11-31 (36)
16 3tnu_A Keratin, type I cytoske 34.6 46 0.0016 28.4 4.6 48 58-105 33-80 (131)
17 4h22_A Leucine-rich repeat fli 33.7 96 0.0033 26.7 6.4 62 55-133 36-97 (103)
18 3efg_A Protein SLYX homolog; x 33.6 60 0.002 26.1 4.9 34 88-124 11-46 (78)
19 3dde_A TENA/THI-4 protein, dom 33.2 41 0.0014 30.3 4.3 43 102-144 194-236 (239)
20 1i84_S Smooth muscle myosin he 32.8 1.2E+02 0.0041 34.1 8.7 16 60-75 861-876 (1184)
21 4ani_A Protein GRPE; chaperone 32.4 3.2E+02 0.011 25.7 11.1 50 140-191 109-162 (213)
22 1sf9_A YFHH hypothetical prote 32.1 54 0.0019 29.2 4.7 33 60-94 36-68 (128)
23 3kbt_A Beta-I spectrin, spectr 31.9 2.9E+02 0.0099 25.0 14.6 128 50-190 38-170 (326)
24 1gk7_A Vimentin; intermediate 31.2 42 0.0014 24.1 3.2 34 62-95 5-38 (39)
25 2in0_A Endonuclease PI-MTUI; h 28.9 50 0.0017 27.4 3.9 63 341-404 7-72 (139)
26 2cx7_A Sterol carrier protein 27.6 26 0.00088 29.6 1.9 49 306-367 29-80 (130)
27 2etd_A LEMA protein; bromodoma 27.2 51 0.0018 29.7 3.9 48 132-191 75-123 (171)
28 3hnw_A Uncharacterized protein 27.0 1.6E+02 0.0054 25.8 6.8 43 55-97 81-123 (138)
29 1m1j_B Fibrinogen beta chain; 26.1 4.3E+02 0.015 27.5 10.9 27 53-79 89-116 (464)
30 2lf0_A Uncharacterized protein 24.8 84 0.0029 27.9 4.6 30 68-97 22-56 (123)
31 1u4q_A Spectrin alpha chain, b 24.6 3.8E+02 0.013 24.0 12.5 126 52-190 39-168 (322)
32 1cun_A Protein (alpha spectrin 23.7 3.3E+02 0.011 22.9 14.3 126 53-191 37-166 (213)
33 3ol1_A Vimentin; structural ge 23.6 3.3E+02 0.011 22.9 10.0 37 62-105 19-55 (119)
34 1nkp_A C-MYC, MYC proto-oncoge 22.3 74 0.0025 25.7 3.6 35 63-97 52-86 (88)
35 3swk_A Vimentin; cytoskeleton, 21.4 2.2E+02 0.0074 23.0 6.2 38 64-101 1-38 (86)
36 2v71_A Nuclear distribution pr 21.3 3E+02 0.01 25.6 7.8 65 60-129 46-128 (189)
37 3v3l_A E3 ubiquitin-protein li 21.0 1.1E+02 0.0037 24.6 4.3 39 387-425 4-42 (85)
38 2d1l_A Metastasis suppressor p 20.9 1.2E+02 0.0041 29.1 5.3 46 106-152 167-215 (253)
39 4ay1_A Chitinase-3-like protei 20.3 99 0.0034 29.4 4.6 47 132-178 89-143 (365)
40 1joc_A EEA1, early endosomal a 20.2 1.4E+02 0.005 25.2 5.1 33 69-104 6-38 (125)
41 2xv5_A Lamin-A/C; structural p 20.1 1.7E+02 0.0057 23.4 5.1 45 52-97 8-53 (74)
42 1z0k_B FYVE-finger-containing 20.1 1.4E+02 0.0048 24.0 4.6 44 61-106 25-68 (69)
No 1
>4dix_A Plectin-related protein; PH domain, IG domain, malonate ION, beta sheet, PH superfold cytosolic, protein binding; 1.70A {Arabidopsis thaliana}
Probab=99.92 E-value=7.2e-25 Score=206.41 Aligned_cols=145 Identities=21% Similarity=0.332 Sum_probs=128.4
Q ss_pred ceeecccCCCcceeeccccc--CCcccceeeeEEec-cCCcccccccCCCcceeeecccccceeEEEeeecCCCCcccce
Q 012377 312 FQIIGEATPGEKLLGCGYPV--RGTTLCMFQWVRHL-QDGTRHYIEGATNPEYVVTADDVDKLIAVECIPMDDQGRQGEL 388 (465)
Q Consensus 312 l~I~Gda~pG~~L~acG~~i--nGTt~c~FqWVrhl-eDGs~~~IegA~~p~Y~vTADDvd~llAiec~Pmdd~~rkGel 388 (465)
+.+-|.-..|.-|+..--+. ---++|+|||+||+ |+|+++.|.||+.|.|.++++||+++|++||+| .|++
T Consensus 15 y~L~G~e~LGs~L~i~~~~~~~~dlS~CsiQW~R~~~egs~re~IsGAtk~~YAPeP~DVGrlLqadi~~------~G~k 88 (230)
T 4dix_A 15 YEIDGTEALGSCLRVRPCSNDAPDLSKCTIQWYRSSSDGSKKELISGATKSVYAPEPFDVGRVLHADIIY------DGHS 88 (230)
T ss_dssp EEEESCCBTTSCEEEEESSTTSCCGGGSEEEEEEECTTSSSEEECTTCCSSEECCCGGGBTSEEEEEEEE------TTEE
T ss_pred eeecchhhccceEEEEeccCCCCcccccceEEEEeecCCCceeEEeccccccccCCccccccEEEEEEec------CCcE
Confidence 34556777777776544333 34789999999999 789999999999999999999999999999998 3999
Q ss_pred eEEeecCCCccccCccchHHHHHHhhhcceEEEEEeecccccccc-cceeEEeecceEEeec-CCcceeeecCCCCCC
Q 012377 389 VRRFANDQNKIKCDLGMQSEIDAYISRGHATFSVLMLMDSSENWE-QATLILRRSIYRIKID-STEAIIEERFPKEVS 464 (465)
Q Consensus 389 V~~~aNd~~kI~cdp~mq~~I~~~~~~G~asf~V~l~~~~~d~wE-~atL~irR~gy~ik~~-~~~~~i~Ekfs~~~~ 464 (465)
|.+|+| .+|.|+|+|++.|++++.+|.+.|.|.++...-+.|+ ++++|+.+-.|.||.. ...+++.|+||++.+
T Consensus 89 ~t~~T~--gpId~a~GL~~yVEaL~rk~~tEFNVvv~q~nG~d~~s~sihvl~vgk~RiKL~kg~~t~akE~YSssmQ 164 (230)
T 4dix_A 89 LSLSTV--GKIDPAAGLGSYVEALVRKHDVDFNVVVTQMSGEDHTSESIHLFHVGKMRIKLCKGKTVIAKEYYSSAMQ 164 (230)
T ss_dssp EEEEEE--EEBBCCTTHHHHHHHHHTTSEEEEEEEEEEETTEECCCCCEEEEEEESSEEEEEETTEEEEEEECCTTCE
T ss_pred EEEEec--CCCCCCchhHHHHHHHhhcCCCcEEEEEEEEcCccCccceEEEEEeccEEEEEecCceEEeeeeecccce
Confidence 999999 7999999999999999999999999999977789999 9999999999999998 444899999999865
No 2
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=56.13 E-value=3.5 Score=41.21 Aligned_cols=27 Identities=7% Similarity=0.179 Sum_probs=14.7
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhhhccc
Q 012377 165 ISNTVKHLYDQLQSQIRTSYDRIRDLT 191 (465)
Q Consensus 165 IvsnvKvLf~hLq~kL~~te~klke~~ 191 (465)
.....|...+.|+.++..+..++|+..
T Consensus 552 ~~~~~~~~~~~l~~e~~~~~~~~~~l~ 578 (597)
T 3oja_B 552 QLDNKRAKQAELRQETSLKRQKVKQLE 578 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555556666655
No 3
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=53.78 E-value=90 Score=28.75 Aligned_cols=54 Identities=17% Similarity=0.201 Sum_probs=38.9
Q ss_pred hhHHHHhhccHHHHHHHHHHHHHHhhh---------h-----hhhhhhhhhhHHHHHHHHHHHhHHhh
Q 012377 52 MELYSRARMQKEEIHSLRQQIAVACLK---------E-----LQLQNEKYTLERKVSELRMAIDEKQN 105 (465)
Q Consensus 52 ~~L~~k~re~EEEI~~LRk~LadasvK---------E-----~QllnEKyvLErRiA~mRmAfDqqQq 105 (465)
.++=.+.|..=|--..|||.-++++.. | .+|-+.|-.||+-++.|.-+.++-..
T Consensus 16 ~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~ 83 (168)
T 3o0z_A 16 EEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERR 83 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666667888888777643 3 35778899999999999998887653
No 4
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=52.76 E-value=25 Score=26.68 Aligned_cols=40 Identities=33% Similarity=0.423 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHhHHhh
Q 012377 66 HSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQN 105 (465)
Q Consensus 66 ~~LRk~LadasvKE~QllnEKyvLErRiA~mRmAfDqqQq 105 (465)
.-|||+||..--.-+||-.+..-|||-||.||=-+-.-.+
T Consensus 6 aylrkkiarlkkdnlqlerdeqnlekiianlrdeiarlen 45 (52)
T 3he5_B 6 AYLRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLEN 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHH
Confidence 4689999998888899999999999999999965544433
No 5
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=50.45 E-value=62 Score=36.51 Aligned_cols=29 Identities=17% Similarity=0.255 Sum_probs=20.0
Q ss_pred cchhhhhhHHHHHHHHHHHHHHhhhhhhc
Q 012377 161 NASAISNTVKHLYDQLQSQIRTSYDRIRD 189 (465)
Q Consensus 161 DAqSIvsnvKvLf~hLq~kL~~te~klke 189 (465)
+-+..|++++..-+.|+.++..++..+.+
T Consensus 1020 ~L~~kv~~L~~e~~~L~qq~~~l~~~~~~ 1048 (1080)
T 2dfs_A 1020 ETEQLVSELKEQNTLLKTEKEELNRRIHD 1048 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33477888888888888877777654433
No 6
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=49.81 E-value=26 Score=28.59 Aligned_cols=29 Identities=24% Similarity=0.274 Sum_probs=23.3
Q ss_pred hhhhHHHHhhccHHHHH-------HHHHHHHHHhhh
Q 012377 50 EAMELYSRARMQKEEIH-------SLRQQIAVACLK 78 (465)
Q Consensus 50 ~~~~L~~k~re~EEEI~-------~LRk~LadasvK 78 (465)
.++||..++++..+||. +||.+|--|+.=
T Consensus 4 QNKeL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtel 39 (74)
T 2q6q_A 4 QNKELNFKLREKQNEIFELKKIAETLRSKLEKYVDI 39 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999995 567777777653
No 7
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=47.75 E-value=16 Score=32.35 Aligned_cols=41 Identities=17% Similarity=0.271 Sum_probs=35.8
Q ss_pred HHhhccHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHH
Q 012377 56 SRARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSEL 96 (465)
Q Consensus 56 ~k~re~EEEI~~LRk~LadasvKE~QllnEKyvLErRiA~m 96 (465)
.++++.+.||..|..+|-|+|.+=-+|+.+...|--||+.-
T Consensus 71 ~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~~ 111 (121)
T 3mq7_A 71 KKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIADK 111 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhhc
Confidence 46889999999999999999999999999999998888753
No 8
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=45.53 E-value=66 Score=32.11 Aligned_cols=20 Identities=5% Similarity=-0.012 Sum_probs=7.5
Q ss_pred hhhhhhhhHHHHHHHHHHHh
Q 012377 82 LQNEKYTLERKVSELRMAID 101 (465)
Q Consensus 82 llnEKyvLErRiA~mRmAfD 101 (465)
+..+...+++.+..+.-.++
T Consensus 521 ~~~~~~~~~~~~~~~~~~~~ 540 (597)
T 3oja_B 521 KLRETQARRTEADAKQKETE 540 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhhhhhcchh
Confidence 33333333333333333333
No 9
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A
Probab=43.39 E-value=43 Score=30.79 Aligned_cols=14 Identities=14% Similarity=0.382 Sum_probs=6.2
Q ss_pred cHHHHHHHHHHHHH
Q 012377 61 QKEEIHSLRQQIAV 74 (465)
Q Consensus 61 ~EEEI~~LRk~Lad 74 (465)
.+|||..+.+....
T Consensus 120 s~eeI~~m~~~a~~ 133 (219)
T 4e81_A 120 NEDEIQKMVRDAEA 133 (219)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 34455444444333
No 10
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=39.24 E-value=62 Score=27.41 Aligned_cols=48 Identities=13% Similarity=0.100 Sum_probs=37.4
Q ss_pred hhccHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHhHHhh
Q 012377 58 ARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQN 105 (465)
Q Consensus 58 ~re~EEEI~~LRk~LadasvKE~QllnEKyvLErRiA~mRmAfDqqQq 105 (465)
++..++||..||+.|-...+.=--+.+-|..||+.|+++.--|+.+-.
T Consensus 31 l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~ 78 (129)
T 3tnu_B 31 LRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALK 78 (129)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999887776566788999999999999887765433
No 11
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=37.62 E-value=1.2e+02 Score=34.38 Aligned_cols=18 Identities=33% Similarity=0.446 Sum_probs=9.0
Q ss_pred HhhccHHHHHHHHHHHHH
Q 012377 57 RARMQKEEIHSLRQQIAV 74 (465)
Q Consensus 57 k~re~EEEI~~LRk~Lad 74 (465)
++++.++||..|++.+..
T Consensus 985 ~v~~L~~e~~~l~~~~~~ 1002 (1080)
T 2dfs_A 985 RVLSLQEEIAKLRKELHQ 1002 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455555555555543
No 12
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=37.11 E-value=3e+02 Score=29.41 Aligned_cols=110 Identities=17% Similarity=0.172 Sum_probs=68.0
Q ss_pred chhhhhHHHHhhccHHHHH--HHHHHHHHHhhh-hhhhhhhhhhhHHHHHHHHHHHhH---HhhHHHHHHHHHHHHhhhh
Q 012377 48 DREAMELYSRARMQKEEIH--SLRQQIAVACLK-ELQLQNEKYTLERKVSELRMAIDE---KQNEAITSALNELARRKGV 121 (465)
Q Consensus 48 d~~~~~L~~k~re~EEEI~--~LRk~LadasvK-E~QllnEKyvLErRiA~mRmAfDq---qQqdlVdAASKaLSyRQdi 121 (465)
+|-++.++.|+++-|+|.. .+|-+..+.-.+ ...-|.+-| +++.----.|+ .|-+.++.|.|++. +=+
T Consensus 89 sPgE~~~~~Kl~eLE~e~k~d~~~~khn~~I~~k~g~~l~~v~----~~~~~~~~~e~~e~~q~~~LekAl~s~~--~i~ 162 (526)
T 3iyk_A 89 SPGERGIQAKLKELEDEQRNELVRLKYNDKIKEKFGKELEEVY----NFMNGEANAEIEDEKQFDILNKAVTSYN--KIL 162 (526)
T ss_pred CHhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhhhhhHHHHHHHHHHHHHHHH--HHH
Confidence 4678899999999888875 444444333332 222222222 22221122222 47788888888754 444
Q ss_pred Hhhhh---hhhhhhhhhhhhhHHHHHHHHHHhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHH
Q 012377 122 LEENL---KLAHDLKVAEDERYFFMSSMLGLLADYGLWPHVTNASAISNTVKHLYDQLQSQIRT 182 (465)
Q Consensus 122 iEENi---RLtyalq~aeQERstFvSSLLpLLaEY~LqP~V~DAqSIvsnvKvLf~hLq~kL~~ 182 (465)
-+||- +|+-|||....+|+ .|=..+|+..+.=|+.|++-+..
T Consensus 163 ~~e~~~l~~L~~AL~kE~~~Rt-------------------~dE~~mi~~yr~k~~aL~~aIe~ 207 (526)
T 3iyk_A 163 TEEDLQMRRLATALQKEIGERT-------------------HAETVMVKEYRDKIDALKNAIEV 207 (526)
T ss_pred HHHHhHHHHHHHHHHHHHHhhc-------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45554 57889999999997 36667777777788888776543
No 13
>2gtv_X CM, chorismate mutase; four-helix bundle, isomerase; HET: TSA; NMR {Methanocaldococcus jannaschii} SCOP: a.130.1.3
Probab=36.59 E-value=1.3e+02 Score=25.21 Aligned_cols=75 Identities=19% Similarity=0.244 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHhhhhh--------hhhhhhhhhHHHHHHHHHHH-----hHHhhH-HHHHHHHH-----------HHHh
Q 012377 64 EIHSLRQQIAVACLKEL--------QLQNEKYTLERKVSELRMAI-----DEKQNE-AITSALNE-----------LARR 118 (465)
Q Consensus 64 EI~~LRk~LadasvKE~--------QllnEKyvLErRiA~mRmAf-----DqqQqd-lVdAASKa-----------LSyR 118 (465)
++..||++|.+.--+=+ .|++|.-.|=+.||....+- |..... +++...+. -..=
T Consensus 4 ~L~~lR~~ID~ID~~il~~~~~~~~~Ll~eR~~l~~~Va~~K~~~g~pi~dp~RE~~vl~~~~~~~~~~~l~~~~i~~if 83 (104)
T 2gtv_X 4 KLAEIRKKIDEIDNKILKARWPWAEKLIAERNSLAKDVAEIKNQLGIPINDPEREKYIYDRIRKLCKEHNVDENIGIKIF 83 (104)
T ss_dssp HHHHHHHHHHHHHHHHHTSSSSSCCCCHHHHHHHHHHHHHHHHHHTSCSCCHHHHHHHHHHHHHHHHHHTSCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHCCCCCcChHHHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 47788999988887778 88899999999999888653 443332 33332221 1234
Q ss_pred hhhHhhhhhhhhhhhhhhhh
Q 012377 119 KGVLEENLKLAHDLKVAEDE 138 (465)
Q Consensus 119 QdiiEENiRLtyalq~aeQE 138 (465)
+.||+.++++-+.+-...||
T Consensus 84 ~~ii~~s~~~Q~~~l~~~~~ 103 (104)
T 2gtv_X 84 QRLIEHNKALQKQYLEETLE 103 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcC
Confidence 56777777777766655544
No 14
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=35.88 E-value=90 Score=35.08 Aligned_cols=13 Identities=15% Similarity=0.381 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 012377 62 KEEIHSLRQQIAV 74 (465)
Q Consensus 62 EEEI~~LRk~Lad 74 (465)
++|+..|++.|.+
T Consensus 856 ~~El~~L~~eL~e 868 (1184)
T 1i84_S 856 EEEMQAKDEELQR 868 (1184)
T ss_dssp HHHCCHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 15
>2l2l_B Methyl-CPG-binding domain protein 2; DNA methylation, coiled-coil, NURD, MBD2, P66alpha, transfer; NMR {Homo sapiens}
Probab=35.46 E-value=21 Score=25.84 Aligned_cols=21 Identities=24% Similarity=0.456 Sum_probs=18.4
Q ss_pred HhhccHHHHHHHHHHHHHHhh
Q 012377 57 RARMQKEEIHSLRQQIAVACL 77 (465)
Q Consensus 57 k~re~EEEI~~LRk~Ladasv 77 (465)
-+|.||+-....|++|+++-.
T Consensus 11 DIr~QE~rV~~aR~rL~eaL~ 31 (36)
T 2l2l_B 11 DIRKQEERVQQVRKKLEEALM 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999854
No 16
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=34.59 E-value=46 Score=28.39 Aligned_cols=48 Identities=19% Similarity=0.133 Sum_probs=32.7
Q ss_pred hhccHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHhHHhh
Q 012377 58 ARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQN 105 (465)
Q Consensus 58 ~re~EEEI~~LRk~LadasvKE~QllnEKyvLErRiA~mRmAfDqqQq 105 (465)
++...+||..||+.|-...+.=-.+.+-|..||+.|+++.--|+.+-.
T Consensus 33 l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~ 80 (131)
T 3tnu_A 33 VQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLA 80 (131)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 355678999999999887776556778899999999999887776543
No 17
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=33.73 E-value=96 Score=26.71 Aligned_cols=62 Identities=21% Similarity=0.159 Sum_probs=37.9
Q ss_pred HHHhhccHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHhhhhHhhhhhhhhhhh
Q 012377 55 YSRARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNEAITSALNELARRKGVLEENLKLAHDLK 133 (465)
Q Consensus 55 ~~k~re~EEEI~~LRk~LadasvKE~QllnEKyvLErRiA~mRmAfDqqQqdlVdAASKaLSyRQdiiEENiRLtyalq 133 (465)
=.+.-+.||...+|++.+-+-| |-+..++.++|-.|.++.. .--+|.+|-.+|+| ||+.||.
T Consensus 36 KD~LEe~eE~~aql~Re~~eK~--------------re~e~~Kr~~~~L~~~~~~-lk~~L~qRD~LI~E--~~~~~~~ 97 (103)
T 4h22_A 36 KDMLLELEEQLAESRRQYEEKN--------------KEFEREKHAHSILQFQFAE-VKEALKQREEMLEP--KLAAALE 97 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH-HHHHHHTTTSCC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH--HHHHHHH
Confidence 3466788888888888877654 2255666777776666543 45589999999998 5666654
No 18
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=33.60 E-value=60 Score=26.10 Aligned_cols=34 Identities=26% Similarity=0.324 Sum_probs=24.4
Q ss_pred hhHHHHHH--HHHHHhHHhhHHHHHHHHHHHHhhhhHhh
Q 012377 88 TLERKVSE--LRMAIDEKQNEAITSALNELARRKGVLEE 124 (465)
Q Consensus 88 vLErRiA~--mRmAfDqqQqdlVdAASKaLSyRQdiiEE 124 (465)
.||.||.+ +|+|| |.+.|+.-++++..-|..|..
T Consensus 11 ~le~Ri~~LE~klAf---qE~tIeeLn~~v~~Qq~~Id~ 46 (78)
T 3efg_A 11 ELEARLVELETRLSF---QEQALTELSEALADARLTGAR 46 (78)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 35666664 46776 778888888888877777664
No 19
>3dde_A TENA/THI-4 protein, domain of unknown function WI oxygenase-like fold; structural genomics, joint center for structural genomics; HET: MSE PGE; 2.30A {Shewanella denitrificans OS217}
Probab=33.17 E-value=41 Score=30.25 Aligned_cols=43 Identities=19% Similarity=0.309 Sum_probs=34.5
Q ss_pred HHhhHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhHHHHH
Q 012377 102 EKQNEAITSALNELARRKGVLEENLKLAHDLKVAEDERYFFMS 144 (465)
Q Consensus 102 qqQqdlVdAASKaLSyRQdiiEENiRLtyalq~aeQERstFvS 144 (465)
++|+.+|++|-.+.....+++++=-+--..++..+-+|+.|+-
T Consensus 194 ~~~~~ii~~a~~~~~l~~~~f~~l~~~~~~~~~~~~~~~~~~~ 236 (239)
T 3dde_A 194 EDVDSVVAVMENSLVLTARILDDVWKEYQLFQSGASDRYAFLR 236 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCSSCCCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchhHHHHh
Confidence 5689999999999999999998866554444999999999873
No 20
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=32.84 E-value=1.2e+02 Score=34.11 Aligned_cols=16 Identities=19% Similarity=0.324 Sum_probs=8.2
Q ss_pred ccHHHHHHHHHHHHHH
Q 012377 60 MQKEEIHSLRQQIAVA 75 (465)
Q Consensus 60 e~EEEI~~LRk~Lada 75 (465)
+.++|+..|+.+|...
T Consensus 861 ~L~~eL~el~~~L~~l 876 (1184)
T 1i84_S 861 AKDEELQRTKERQQKA 876 (1184)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555555555444
No 21
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=32.40 E-value=3.2e+02 Score=25.65 Aligned_cols=50 Identities=16% Similarity=0.303 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhhhcC--C--CCCcccchhhhhhHHHHHHHHHHHHHHhhhhhhccc
Q 012377 140 YFFMSSMLGLLADYG--L--WPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLT 191 (465)
Q Consensus 140 stFvSSLLpLLaEY~--L--qP~V~DAqSIvsnvKvLf~hLq~kL~~te~klke~~ 191 (465)
.-|+..|||.|--+. | -|.-.+..++..+|+-++++|..=|. ..-|+.+.
T Consensus 109 e~~~~~LLpVlDnlerAl~~~~~~~~~~~l~eGvemi~k~l~~~L~--k~Gv~~I~ 162 (213)
T 4ani_A 109 QSLASDLLPVLDNFERALKIETDNEQAKSILQGMEMVYRSLVDALK--KEGVEAIE 162 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCSCCSTHHHHHHHHHHHHHHHHHHHH--HTTEECCC
T ss_pred HHHHHHHhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHH--HCCCEEeC
Confidence 469999999987762 2 24445667899999999999988774 33344443
No 22
>1sf9_A YFHH hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative, midwest center for structural genomics; 1.71A {Bacillus subtilis} SCOP: b.34.15.1
Probab=32.07 E-value=54 Score=29.22 Aligned_cols=33 Identities=30% Similarity=0.327 Sum_probs=24.7
Q ss_pred ccHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHH
Q 012377 60 MQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVS 94 (465)
Q Consensus 60 e~EEEI~~LRk~LadasvKE~QllnEKyvLErRiA 94 (465)
|-++||..|+.+-..| .+.-+.||--|+||||+
T Consensus 36 EL~~EI~~L~EKaRKA--Eq~Gi~NE~aV~erKi~ 68 (128)
T 1sf9_A 36 ELNTEIALLSEKARKA--EQHGIINELAVLERKIT 68 (128)
T ss_dssp HHHHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--HHcCCccHHHHHHHHHH
Confidence 4456777777765554 46779999999999985
No 23
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Probab=31.91 E-value=2.9e+02 Score=24.97 Aligned_cols=128 Identities=13% Similarity=0.119 Sum_probs=73.9
Q ss_pred hhhhHHHHhhccHHHHHHHHHHHHHHhhhhhhhhhhh----hhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHhhhhHhhh
Q 012377 50 EAMELYSRARMQKEEIHSLRQQIAVACLKELQLQNEK----YTLERKVSELRMAIDEKQNEAITSALNELARRKGVLEEN 125 (465)
Q Consensus 50 ~~~~L~~k~re~EEEI~~LRk~LadasvKE~QllnEK----yvLErRiA~mRmAfDqqQqdlVdAASKaLSyRQdiiEEN 125 (465)
+++.++.|-+.-+.||...+..+....-.=-+|+.++ -.+.+|+..|+-.|+ .|.+. ..-|+..||+.
T Consensus 38 ~~~~ll~kh~~~~~el~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~l~~l~~~w~----~L~~~----~~~R~~~Le~~ 109 (326)
T 3kbt_A 38 GAIVMLKRHLRQQRAVEDYGRNIKQLASRAQGLLSAGHPEGEQIIRLQGQVDKHYA----GLKDV----AEERKRKLENM 109 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHH----HHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHH----HHHHH----HHHHHHHHHHH
Confidence 3456777777777888776666655443333344433 356777777766554 33333 34588999999
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHHhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHHh-hhhhhcc
Q 012377 126 LKLAHDLKVAEDERYFFMSSMLGLLADYGLWPHVTNASAISNTVKHLYDQLQSQIRTS-YDRIRDL 190 (465)
Q Consensus 126 iRLtyalq~aeQERstFvSSLLpLLaEY~LqP~V~DAqSIvsnvKvLf~hLq~kL~~t-e~klke~ 190 (465)
++| |.+...=++--..+..-...|+.-+ +.+--.-|..+..-|+.++..+..+ +.++..+
T Consensus 110 l~l-~~f~~~~~~l~~Wl~~~e~~l~~~~----~g~d~~~v~~l~~~~~~f~~el~~~~~~~v~~l 170 (326)
T 3kbt_A 110 YHL-FQLKRETDDLEQWISEKELVASSPE----MGQDFDHVTLLRDKFRDFARETGAIGQERVDNV 170 (326)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHHHHHCCC----CCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHcccc----CCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 887 5544444455566666666665322 2222233444555577777777653 4555443
No 24
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=31.16 E-value=42 Score=24.08 Aligned_cols=34 Identities=21% Similarity=0.178 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHH
Q 012377 62 KEEIHSLRQQIAVACLKELQLQNEKYTLERKVSE 95 (465)
Q Consensus 62 EEEI~~LRk~LadasvKE~QllnEKyvLErRiA~ 95 (465)
.|++..|-.|||.|.-|=-.|=.+...||.+|..
T Consensus 5 Ke~mq~LNdrlAsyidkVR~LE~~N~~Le~~i~~ 38 (39)
T 1gk7_A 5 KVELQELNDRFANYIDKVRFLEQQNKILLAELEQ 38 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4788999999999999987887888888888753
No 25
>2in0_A Endonuclease PI-MTUI; hydrolase; 1.60A {Mycobacterium tuberculosis} PDB: 2l8l_A 2in9_A 2in8_A 3ifj_A 3igd_A
Probab=28.90 E-value=50 Score=27.37 Aligned_cols=63 Identities=22% Similarity=0.179 Sum_probs=43.1
Q ss_pred eEEeccCCcccccccC---CCcceeeecccccceeEEEeeecCCCCcccceeEEeecCCCccccCcc
Q 012377 341 WVRHLQDGTRHYIEGA---TNPEYVVTADDVDKLIAVECIPMDDQGRQGELVRRFANDQNKIKCDLG 404 (465)
Q Consensus 341 WVrhleDGs~~~IegA---~~p~Y~vTADDvd~llAiec~Pmdd~~rkGelV~~~aNd~~kI~cdp~ 404 (465)
+|-.++||+...|+.- +..+.+++.|.=+++..-.+.-.-+++ ..+++++-..+|+.|+|-|+
T Consensus 7 ~V~~~~~G~~~~I~~l~~~~~gd~V~s~d~~g~~~~~~v~~~~~~~-~~~~~~i~t~~G~~i~~T~~ 72 (139)
T 2in0_A 7 RIFDPVTGTTHRIEDVVDGRKPIHVVAAAKDGTLHARPVVSWFDQG-TRDVIGLRIAGGAILWATPD 72 (139)
T ss_dssp EEECTTTCCEEEHHHHHHTTCCCEEEEECTTSCEEEEEEEEEEEEE-EEEEEEEEETTSCEEEECTT
T ss_pred EEEECCCCCEEEHHHhhCccCCCEEEEECCCCCEEEEEEEEEEEcC-CcEEEEEEeCCCCEEEecCC
Confidence 4445688976677755 666788888755565544444333333 55899998899999998775
No 26
>2cx7_A Sterol carrier protein 2; sterol transfer, SCP-2, RSGI, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} PDB: 1wfr_A
Probab=27.62 E-value=26 Score=29.64 Aligned_cols=49 Identities=18% Similarity=0.266 Sum_probs=31.4
Q ss_pred CCCcccceeecccCCCcceeecccccCCcccceeeeEEeccCCcccccccC--CC-cceeeeccc
Q 012377 306 GPGIEGFQIIGEATPGEKLLGCGYPVRGTTLCMFQWVRHLQDGTRHYIEGA--TN-PEYVVTADD 367 (465)
Q Consensus 306 lP~i~gl~I~Gda~pG~~L~acG~~inGTt~c~FqWVrhleDGs~~~IegA--~~-p~Y~vTADD 367 (465)
+-|+-.+.|+|++ .||++ |+ -.|.=.|++|.+.+.+.. .. |+|++|+++
T Consensus 29 ~~~~~~~~i~~~p-------~~g~~--~~----~~~~l~l~~G~~~~~~~~~~~~~~d~tl~~~~ 80 (130)
T 2cx7_A 29 WEGSLALAVRPDP-------KAGFP--KG----VAVVLDLWHGACRGAKAVEGEAEADFVIEADL 80 (130)
T ss_dssp CEEEEEEEECCBG-------GGTBT--TC----EEEEEEEETTEEEEEEEEESCCCCSEEEEECH
T ss_pred CcceEEEEEecCc-------ccCCC--CC----ceEEEEEeCCEEEEccccCCCCCCCEEEEEcH
Confidence 3456677888775 12443 22 238889999988665532 23 889888765
No 27
>2etd_A LEMA protein; bromodomain-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.28A {Thermotoga maritima} SCOP: a.29.9.1
Probab=27.20 E-value=51 Score=29.68 Aligned_cols=48 Identities=21% Similarity=0.256 Sum_probs=37.5
Q ss_pred hhhhhhhhHHHHHHHHHHhhhc-CCCCCcccchhhhhhHHHHHHHHHHHHHHhhhhhhccc
Q 012377 132 LKVAEDERYFFMSSMLGLLADY-GLWPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLT 191 (465)
Q Consensus 132 lq~aeQERstFvSSLLpLLaEY-~LqP~V~DAqSIvsnvKvLf~hLq~kL~~te~klke~~ 191 (465)
++.|+++.+.-++.|+-+...| +|... .-|.+||.+|..+|.+|.-..
T Consensus 75 ~~~ae~~Ls~aL~~L~av~E~YP~LKan------------~~f~~Lq~eL~~~EnrIa~AR 123 (171)
T 2etd_A 75 SAQADAELSSALSRLLAIAENYPNLXAD------------ANFRQLMDELAGTENRIAVAR 123 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHC------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCcccccC------------hHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888888877777 55433 359999999999999986654
No 28
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=26.98 E-value=1.6e+02 Score=25.80 Aligned_cols=43 Identities=16% Similarity=0.219 Sum_probs=25.6
Q ss_pred HHHhhccHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHH
Q 012377 55 YSRARMQKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELR 97 (465)
Q Consensus 55 ~~k~re~EEEI~~LRk~LadasvKE~QllnEKyvLErRiA~mR 97 (465)
-..+.+-++||..|+..|..+.+|--.+..|...|.+++..|+
T Consensus 81 ~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~ 123 (138)
T 3hnw_A 81 SLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQ 123 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455666666777777666666666555555555555554
No 29
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=26.14 E-value=4.3e+02 Score=27.50 Aligned_cols=27 Identities=11% Similarity=0.103 Sum_probs=17.6
Q ss_pred hHHHHhhc-cHHHHHHHHHHHHHHhhhh
Q 012377 53 ELYSRARM-QKEEIHSLRQQIAVACLKE 79 (465)
Q Consensus 53 ~L~~k~re-~EEEI~~LRk~LadasvKE 79 (465)
+...+.++ -+..|.+|+..|...+-+.
T Consensus 89 D~L~k~q~~V~~~LqeLe~~l~~lsn~T 116 (464)
T 1m1j_B 89 TTLLKQEKTVKPVLRDLKDRVAKFSDTS 116 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhHhHHHHHHHHHHHHhhhh
Confidence 44444433 4577889999998876543
No 30
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=24.83 E-value=84 Score=27.86 Aligned_cols=30 Identities=40% Similarity=0.480 Sum_probs=22.3
Q ss_pred HHHHHHHHhhh-----hhhhhhhhhhhHHHHHHHH
Q 012377 68 LRQQIAVACLK-----ELQLQNEKYTLERKVSELR 97 (465)
Q Consensus 68 LRk~LadasvK-----E~QllnEKyvLErRiA~mR 97 (465)
+|.+||.+... =+|+..|+..|+++|+.||
T Consensus 22 ~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk 56 (123)
T 2lf0_A 22 IRHQQADLSLVEAADKYAELEKEKATLEAEIARLR 56 (123)
T ss_dssp HHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555433 2688999999999999998
No 31
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Probab=24.64 E-value=3.8e+02 Score=24.03 Aligned_cols=126 Identities=10% Similarity=0.147 Sum_probs=68.9
Q ss_pred hhHHHHhhccHHHHHHHHHHHHHHhhhhhhhhhhhh----hhHHHHHHHHHHHhHHhhHHHHHHHHHHHHhhhhHhhhhh
Q 012377 52 MELYSRARMQKEEIHSLRQQIAVACLKELQLQNEKY----TLERKVSELRMAIDEKQNEAITSALNELARRKGVLEENLK 127 (465)
Q Consensus 52 ~~L~~k~re~EEEI~~LRk~LadasvKE~QllnEKy----vLErRiA~mRmAfDqqQqdlVdAASKaLSyRQdiiEENiR 127 (465)
+.|..+-+.-|.+|.....++....-.=.+|..+.+ .++.|+..|.-.|+. |.+. +..|+..||+..+
T Consensus 39 ~~ll~kh~~le~~i~~~~~~v~~l~~~a~~l~~~~~~~~~~i~~~~~~l~~~w~~----L~~~----~~~R~~~Le~~~~ 110 (322)
T 1u4q_A 39 NNLLKKHQLLEADISAHEDRLKDLNSQADSLMTSSAFDTSQVKDKRETINGRFQR----IKSM----AAARRAKLNESHR 110 (322)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCSSCTHHHHHHHHHHHHHHHH----HHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHH----HHHH----HHHHHHHHHHHHH
Confidence 355666666677777776666554444444544433 344555554444433 3332 4578899999888
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHHhhhhhhcc
Q 012377 128 LAHDLKVAEDERYFFMSSMLGLLADYGLWPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDL 190 (465)
Q Consensus 128 Ltyalq~aeQERstFvSSLLpLLaEY~LqP~V~DAqSIvsnvKvLf~hLq~kL~~te~klke~ 190 (465)
|. .....-++-...+....++|+.-++- .|..++ .++..-++.|+.+|...+..+..+
T Consensus 111 l~-~f~~~~~~~~~Wl~e~e~~~~~~~~g---~dl~~v-~~ll~~h~~l~~el~~~~~~i~~l 168 (322)
T 1u4q_A 111 LH-QFFRDMDDEESWIKEKKLLVSSEDYG---RDLTGV-QNLRKKHKRLEAELAAHEPAIQGV 168 (322)
T ss_dssp HH-HHHHHHHHHHHHHHHHHHHHTCCCCC---SSHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHHHHhccCCCcC---CCHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 53 33333345566677778888764432 233322 223333556666665555544443
No 32
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A
Probab=23.71 E-value=3.3e+02 Score=22.94 Aligned_cols=126 Identities=15% Similarity=0.219 Sum_probs=72.8
Q ss_pred hHHHHhhccHHHHHHHHHHHHHHhhhhhhhhhhhh----hhHHHHHHHHHHHhHHhhHHHHHHHHHHHHhhhhHhhhhhh
Q 012377 53 ELYSRARMQKEEIHSLRQQIAVACLKELQLQNEKY----TLERKVSELRMAIDEKQNEAITSALNELARRKGVLEENLKL 128 (465)
Q Consensus 53 ~L~~k~re~EEEI~~LRk~LadasvKE~QllnEKy----vLErRiA~mRmAfDqqQqdlVdAASKaLSyRQdiiEENiRL 128 (465)
.|..+-+.-+.||.....++....-.=-+|+.+.+ .+..|+..|+-.+++-. + ....|+..||+.+.+
T Consensus 37 ~ll~kh~~~~~ei~~~~~~v~~v~~~g~~L~~~~~~~~~~i~~~~~~l~~~w~~L~----~----~~~~R~~~Le~~~~~ 108 (213)
T 1cun_A 37 NLRKKHKRLEAELAAHEPAIQSVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELK----Q----LAAARGQRLEESLEY 108 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHH----H----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH----H----HHHHHHHHHHHHHHH
Confidence 45555566667777665555433333233444332 45666776665554433 2 335799999999886
Q ss_pred hhhhhhhhhhhHHHHHHHHHHhhhcCCCCCcccchhhhhhHHHHHHHHHHHHHHhhhhhhccc
Q 012377 129 AHDLKVAEDERYFFMSSMLGLLADYGLWPHVTNASAISNTVKHLYDQLQSQIRTSYDRIRDLT 191 (465)
Q Consensus 129 tyalq~aeQERstFvSSLLpLLaEY~LqP~V~DAqSIvsnvKvLf~hLq~kL~~te~klke~~ 191 (465)
+.....=+|-..+++-..++|+.-++ ..|-.++ ..+-.=++.++..|...+.++..+.
T Consensus 109 -~~f~~~~~e~~~Wl~~~e~~l~~~~~---g~~~~~v-~~ll~~h~~~~~el~~~~~~i~~l~ 166 (213)
T 1cun_A 109 -QQFVANVEEEEAWINEKMTLVASEDY---GDTLAAI-QGLLKKHEAFETDFTVHKDRVNDVC 166 (213)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHTCCCC---CSSHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHhhCCCC---CCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555666777778888864322 2233322 2333335667777777777766554
No 33
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=23.60 E-value=3.3e+02 Score=22.92 Aligned_cols=37 Identities=24% Similarity=0.266 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHhHHhh
Q 012377 62 KEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQN 105 (465)
Q Consensus 62 EEEI~~LRk~LadasvKE~QllnEKyvLErRiA~mRmAfDqqQq 105 (465)
|.+|..||++|-+.+.- |-.|+-.+..||.+.|.-..
T Consensus 19 e~~I~~LR~qid~~~~e-------~a~l~leldn~~~~~edfk~ 55 (119)
T 3ol1_A 19 EEEMRELRRQVDQLTND-------KARVEVERDNLAEDIMRLRE 55 (119)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 67899999999888765 44444445555555554443
No 34
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=22.31 E-value=74 Score=25.73 Aligned_cols=35 Identities=20% Similarity=0.183 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHH
Q 012377 63 EEIHSLRQQIAVACLKELQLQNEKYTLERKVSELR 97 (465)
Q Consensus 63 EEI~~LRk~LadasvKE~QllnEKyvLErRiA~mR 97 (465)
+=|..|.++...+.....+|..+...|.+||+.|+
T Consensus 52 ~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 52 AYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44666666666666666677788888888888775
No 35
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=21.37 E-value=2.2e+02 Score=23.02 Aligned_cols=38 Identities=21% Similarity=0.358 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHh
Q 012377 64 EIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAID 101 (465)
Q Consensus 64 EI~~LRk~LadasvKE~QllnEKyvLErRiA~mRmAfD 101 (465)
||..||++|-.++.-=++|..|..-+.--+.++|.=|.
T Consensus 1 Ei~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE 38 (86)
T 3swk_A 1 EMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQ 38 (86)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999998887656555555444444444444444
No 36
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=21.27 E-value=3e+02 Score=25.63 Aligned_cols=65 Identities=17% Similarity=0.129 Sum_probs=40.1
Q ss_pred ccHHHHHHHHHHHHHHhhhhhhhhhh------------------hhhhHHHHHHHHHHHhHHhhHHHHHHHHHHHHhhhh
Q 012377 60 MQKEEIHSLRQQIAVACLKELQLQNE------------------KYTLERKVSELRMAIDEKQNEAITSALNELARRKGV 121 (465)
Q Consensus 60 e~EEEI~~LRk~LadasvKE~QllnE------------------KyvLErRiA~mRmAfDqqQqdlVdAASKaLSyRQdi 121 (465)
+.|.||.++-|++.+.--|=.+|-.| -..|++-|+.||-.-++.+..+. .|-...|-
T Consensus 46 ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ir-----eLEq~NDd 120 (189)
T 2v71_A 46 ELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVR-----ELEQANDD 120 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhhH
Confidence 34445566666666665555555444 44567777777766666665554 36777777
Q ss_pred Hhhhhhhh
Q 012377 122 LEENLKLA 129 (465)
Q Consensus 122 iEENiRLt 129 (465)
+|-+.|-+
T Consensus 121 lEr~~R~~ 128 (189)
T 2v71_A 121 LERAKRAT 128 (189)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777754
No 37
>3v3l_A E3 ubiquitin-protein ligase RNF146; HET: V3L; 1.65A {Homo sapiens}
Probab=21.00 E-value=1.1e+02 Score=24.61 Aligned_cols=39 Identities=15% Similarity=0.235 Sum_probs=34.1
Q ss_pred ceeEEeecCCCccccCccchHHHHHHhhhcceEEEEEee
Q 012377 387 ELVRRFANDQNKIKCDLGMQSEIDAYISRGHATFSVLML 425 (465)
Q Consensus 387 elV~~~aNd~~kI~cdp~mq~~I~~~~~~G~asf~V~l~ 425 (465)
+.+=.|.+++.|..||+.+...|+..+..|+.+.++...
T Consensus 4 ~~~W~w~~~~GW~~Yd~~~s~~IE~af~~~~~~~~l~i~ 42 (85)
T 3v3l_A 4 EYAWYYEGRNGWWQYDERTSRELEDAFSKGKKNTEMLIA 42 (85)
T ss_dssp CEEEEEECSSSEEECCHHHHHHHHHHHHTTCSEEEEEET
T ss_pred ceEEEEeCCCCceeCCHHHHHHHHHHHHhCCCcEEEEeC
Confidence 566678888779999999999999999999998888665
No 38
>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD, protein binding; HET: MSE; 1.85A {Mus musculus}
Probab=20.93 E-value=1.2e+02 Score=29.12 Aligned_cols=46 Identities=28% Similarity=0.325 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHhhhhHhhhhhhhhhhhhhhhhhH---HHHHHHHHHhhh
Q 012377 106 EAITSALNELARRKGVLEENLKLAHDLKVAEDERY---FFMSSMLGLLAD 152 (465)
Q Consensus 106 dlVdAASKaLSyRQdiiEENiRLtyalq~aeQERs---tFvSSLLpLLaE 152 (465)
...|.|.+.+.-|+..||+=++-++. .|.-+||. |||+.|.|.+.+
T Consensus 167 ~~l~~a~q~v~~~~~~le~~~~~~~r-~AL~EERrRycflv~~l~pv~~~ 215 (253)
T 2d1l_A 167 PQLDSALQDVNDKYLLLEETEKQAVR-KALIEERGRFCTFISMLRPVIEE 215 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHH
Confidence 34678888999999999999998887 44445553 789999998865
No 39
>4ay1_A Chitinase-3-like protein 2; chilectin, lectin, chitooligosaccharide, pseudochitinase, HY; HET: NAG; 1.95A {Homo sapiens}
Probab=20.32 E-value=99 Score=29.40 Aligned_cols=47 Identities=15% Similarity=0.328 Sum_probs=31.6
Q ss_pred hhhhhhhhHHHHHHHHHHhhhcCC--------CCCcccchhhhhhHHHHHHHHHH
Q 012377 132 LKVAEDERYFFMSSMLGLLADYGL--------WPHVTNASAISNTVKHLYDQLQS 178 (465)
Q Consensus 132 lq~aeQERstFvSSLLpLLaEY~L--------qP~V~DAqSIvsnvKvLf~hLq~ 178 (465)
+-...+-|.+|+.|++-+|.+|++ .|.-.|....+.-+|.|-+.|+.
T Consensus 89 ~~~~~~~R~~Fi~siv~~~~~~~fDGiDiDWEyP~~~d~~~~~~ll~elr~~~~~ 143 (365)
T 4ay1_A 89 MVDSSTSRLEFINSIILFLRNHNFDGLDVSWIYPDQKENTHFTVLIHELAEAFQK 143 (365)
T ss_dssp GGGSHHHHHHHHHHHHHHHHHTTCCEEEEEESCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCHHHHHHHHHHHHHHHHhcCCceEEEeeecCCcccccccHHHHHHHHHHHHH
Confidence 334467899999999999999987 46555555444444444444433
No 40
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=20.23 E-value=1.4e+02 Score=25.23 Aligned_cols=33 Identities=33% Similarity=0.441 Sum_probs=22.3
Q ss_pred HHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHhHHh
Q 012377 69 RQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQ 104 (465)
Q Consensus 69 Rk~LadasvKE~QllnEKyvLErRiA~mRmAfDqqQ 104 (465)
|..|.+.++|.-+ |...|..++++||..+|.++
T Consensus 6 ~~~~~~~~~~~e~---e~~~l~~~~~el~~~l~~~~ 38 (125)
T 1joc_A 6 RRALLERCLKGEG---EIEKLQTKVLELQRKLDNTT 38 (125)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHH
Confidence 3445556666544 66777888888888887654
No 41
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=20.08 E-value=1.7e+02 Score=23.41 Aligned_cols=45 Identities=20% Similarity=0.262 Sum_probs=33.8
Q ss_pred hhHHHHhhccHHHHHHHHHHHHHHhhhhhh-hhhhhhhhHHHHHHHH
Q 012377 52 MELYSRARMQKEEIHSLRQQIAVACLKELQ-LQNEKYTLERKVSELR 97 (465)
Q Consensus 52 ~~L~~k~re~EEEI~~LRk~LadasvKE~Q-llnEKyvLErRiA~mR 97 (465)
..+-..+-.-|+|+.++|.-++.. ++|-| |+|=|-.||.-||--|
T Consensus 8 ~~~~~~i~~lE~eL~~~r~e~~~q-l~EYq~LlniKl~Le~EIatYR 53 (74)
T 2xv5_A 8 DTSRRLLAEKEREMAEMRARMQQQ-LDEYQELLDIKLALDMEIHAYR 53 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666789999999888776 45544 8999999999888655
No 42
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=20.06 E-value=1.4e+02 Score=24.03 Aligned_cols=44 Identities=27% Similarity=0.338 Sum_probs=37.5
Q ss_pred cHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHhHHhhH
Q 012377 61 QKEEIHSLRQQIAVACLKELQLQNEKYTLERKVSELRMAIDEKQNE 106 (465)
Q Consensus 61 ~EEEI~~LRk~LadasvKE~QllnEKyvLErRiA~mRmAfDqqQqd 106 (465)
-.|.|..+++.|-+| |...=+.|-.+||+-+.+|.=.|+++|.+
T Consensus 25 L~EQ~~~I~~yI~qA--k~~~r~DEV~tLe~NLrEL~~ei~~~q~~ 68 (69)
T 1z0k_B 25 LLQQIHNITSFIRQA--KAAGRMDEVRTLQENLRQLQDEYDQQQTE 68 (69)
T ss_dssp HHHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHH--HHhcCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 357888999999887 66778899999999999999999999853
Done!