BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012378
(465 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PKI|A Chain A, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|B Chain B, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|C Chain C, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|D Chain D, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|E Chain E, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|F Chain F, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKJ|A Chain A, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|B Chain B, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|C Chain C, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|D Chain D, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|E Chain E, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|F Chain F, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
Length = 355
Score = 286 bits (733), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 141/276 (51%), Positives = 191/276 (69%), Gaps = 7/276 (2%)
Query: 2 SLGYAEKLSYIEDVGNVGMAEFFDSPQILQEKIEQLAKLIQKSKHLVVFTGAGISTSCGI 61
S+ YA LS D G G+ E FD P+ L+ K+ +LA+L+ +S +V TGAGIST+ GI
Sbjct: 2 SVNYAAGLSPYADKGKCGLPEIFDPPEELERKVWELARLVWQSSSVVFHTGAGISTASGI 61
Query: 62 PDFRGPNGIWTLQREGKPLPEASLPFHRAMPGMTHMALVELEKAGILKFVISQNVDGLHL 121
PDFRGP+G+WT++ G P+ F A P THMALV+LE+ G+L+F++SQNVDGLH+
Sbjct: 62 PDFRGPHGVWTMEERGL-APKFDTTFESARPTQTHMALVQLERVGLLRFLVSQNVDGLHV 120
Query: 122 RSGIPREKLAELHGNSFMEACPSCGSEYFRDFEVETIGLKETSRRCSDLK------CGAK 175
RSG PR+KLAELHGN F+E C C ++Y RD V T+GLK T R C+ K C +
Sbjct: 121 RSGFPRDKLAELHGNMFVEECAKCKTQYVRDTVVGTMGLKATGRLCTVAKARGLRACRGE 180
Query: 176 LRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVN 235
LRDT+LDWED+LP +++ A++ + AD+ + LGTSLQI P+ NLPL R GG++VIVN
Sbjct: 181 LRDTILDWEDSLPDRDLALADEASRNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVN 240
Query: 236 LQKTPKDKKASLVIHGFVDKVVAGVMDLLNLRIPPY 271
LQ T D+ A L IHG+VD+V+ +M+ L L IP +
Sbjct: 241 LQPTKHDRHADLRIHGYVDEVMTRLMEHLGLEIPAW 276
>pdb|3K35|A Chain A, Crystal Structure Of Human Sirt6
pdb|3K35|B Chain B, Crystal Structure Of Human Sirt6
pdb|3K35|C Chain C, Crystal Structure Of Human Sirt6
pdb|3K35|D Chain D, Crystal Structure Of Human Sirt6
pdb|3K35|E Chain E, Crystal Structure Of Human Sirt6
pdb|3K35|F Chain F, Crystal Structure Of Human Sirt6
Length = 318
Score = 286 bits (732), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 141/276 (51%), Positives = 190/276 (68%), Gaps = 7/276 (2%)
Query: 2 SLGYAEKLSYIEDVGNVGMAEFFDSPQILQEKIEQLAKLIQKSKHLVVFTGAGISTSCGI 61
S+ YA LS D G G+ E FD P+ L+ K+ +LA+L+ +S +V TGAGIST+ GI
Sbjct: 2 SVNYAAGLSPYADKGKCGLPEIFDPPEELERKVWELARLVWQSSSVVFHTGAGISTASGI 61
Query: 62 PDFRGPNGIWTLQREGKPLPEASLPFHRAMPGMTHMALVELEKAGILKFVISQNVDGLHL 121
PDFRGP+G+WT++ G P+ F A P THMALV+LE+ G+L+F++SQNVDGLH+
Sbjct: 62 PDFRGPHGVWTMEERGL-APKFDTTFESARPTQTHMALVQLERVGLLRFLVSQNVDGLHV 120
Query: 122 RSGIPREKLAELHGNSFMEACPSCGSEYFRDFEVETIGLKETSRRCSDLK------CGAK 175
RSG PR+KLAELHGN F+E C C ++Y RD V T+GLK T R C+ K C +
Sbjct: 121 RSGFPRDKLAELHGNMFVEECAKCKTQYVRDTVVGTMGLKATGRLCTVAKARGLRACRGE 180
Query: 176 LRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVN 235
LRDT+LDWED+LP +++ A++ + AD+ + LGTSLQI P+ NLPL R GG++VIVN
Sbjct: 181 LRDTILDWEDSLPDRDLALADEASRNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVN 240
Query: 236 LQKTPKDKKASLVIHGFVDKVVAGVMDLLNLRIPPY 271
LQ T D+ A L IHG+VD+V+ +M L L IP +
Sbjct: 241 LQPTKHDRHADLRIHGYVDEVMTRLMKHLGLEIPAW 276
>pdb|1YC5|A Chain A, Sir2-P53 Peptide-Nicotinamide
pdb|2H4F|A Chain A, Sir2-P53 Peptide-Nad+
pdb|2H4J|A Chain A, Sir2-Deacetylated Peptide (From Enzymatic Turnover In
Crystal)
pdb|2H2D|A Chain A, The Structural Basis For Sirtuin Substrate Affinity
pdb|2H2F|A Chain A, The Structural Basis For Sirtuin Substrate Affinity
pdb|2H2G|A Chain A, The Structural Basis Of Sirtuin Substrate Affinity
pdb|2H2H|A Chain A, The Structural Basis Of Sirtuin Substrate Specificity
pdb|2H2I|A Chain A, The Structural Basis Of Sirtuin Substrate Affinity
pdb|3D4B|A Chain A, Crystal Structure Of Sir2tm In Complex With Acetyl P53
Peptide And Dadme-Nad+
pdb|3D81|A Chain A, Sir2-S-Alkylamidate Complex Crystal Structure
pdb|3PDH|A Chain A, Structure Of Sir2tm Bound To A Propionylated Peptide
Length = 246
Score = 132 bits (333), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 84/233 (36%), Positives = 124/233 (53%), Gaps = 26/233 (11%)
Query: 33 KIEQLAKLIQKSKHLVVFTGAGISTSCGIPDFRGPNGIWTLQREG--------------- 77
K+++ L+ +S+ V TGAGIST GIPDFRGPNGI+ +
Sbjct: 2 KMKEFLDLLNESRLTVTLTGAGISTPSGIPDFRGPNGIYKKYSQNVFDIDFFYSHPEEFY 61
Query: 78 KPLPEASLPFHRAMPGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNS 137
+ E P +A P + H+ L +LE+ G+++ VI+QN+D LH R+G +K+ ELHGN
Sbjct: 62 RFAKEGIFPMLQAKPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAG--SKKVIELHGNV 119
Query: 138 FMEACPSCGSEYFRDFEVETIGLKETSRR---CSDLKCGAKLRDTVLDWEDALPPKEMNP 194
C C +Y VE + K S C D C + +R ++ + + LP +
Sbjct: 120 EEYYCVRCEKKY----TVEDVIKKLESSDVPLCDD--CNSLIRPNIVFFGENLPQDALRE 173
Query: 195 AEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASL 247
A A +++ LG+SL + PA LPL +R GGK+VIVNL +TP D A+L
Sbjct: 174 AIGLSSRASLMIVLGSSLVVYPAAELPLITVRSGGKLVIVNLGETPFDDIATL 226
>pdb|1M2N|A Chain A, Sir2 Homologues (D102gF159AR170A) MUTANT-2'-O-Acetyl Adp
Ribose Complex
pdb|1M2N|B Chain B, Sir2 Homologues (D102gF159AR170A) MUTANT-2'-O-Acetyl Adp
Ribose Complex
Length = 249
Score = 131 bits (330), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 90/254 (35%), Positives = 129/254 (50%), Gaps = 28/254 (11%)
Query: 35 EQLAKLIQKSKHLVVFTGAGISTSCGIPDFRGPNGIWTLQRE---GKPLPEASLP----- 86
E+L K I +SK+LV TGAG+S GIP FRG +G+W R P A P
Sbjct: 3 EKLLKTIAESKYLVALTGAGVSAESGIPTFRGKDGLWNRYRPEELANPQAFAKDPEKVWK 62
Query: 87 --------FHRAMPGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSF 138
A P H A ELE+ G+LK +I+QNVDGLH R+G + LHG+
Sbjct: 63 WYAWRMEKVFNAQPNKAHQAFAELERLGVLKCLITQNVDGLHERAG--SRNVIHLHGSLR 120
Query: 139 MEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLRDTVLDWEDALPPKEMNPAEKH 198
+ C SC + FEVE+ +C KCG+ LR V+ + LPP ++ A +
Sbjct: 121 VVRCTSCNN----SFEVESAPKIPPLPKCD--KCGSLLRPGVVWAGEMLPPDVLDAAMRE 174
Query: 199 CKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHG----FVD 254
+ ADV++ GTS + PA +LPL + GG I+ +N +TP A + G +D
Sbjct: 175 VERADVIIVAGTSAVVQPAASLPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVMD 234
Query: 255 KVVAGVMDLLNLRI 268
++V V L+L++
Sbjct: 235 ELVRHVRKALSLKL 248
>pdb|2H4H|A Chain A, Sir2 H116y Mutant-P53 Peptide-Nad
Length = 246
Score = 130 bits (328), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 83/233 (35%), Positives = 124/233 (53%), Gaps = 26/233 (11%)
Query: 33 KIEQLAKLIQKSKHLVVFTGAGISTSCGIPDFRGPNGIWTLQREG--------------- 77
K+++ L+ +S+ V TGAGIST GIPDFRGPNGI+ +
Sbjct: 2 KMKEFLDLLNESRLTVTLTGAGISTPSGIPDFRGPNGIYKKYSQNVFDIDFFYSHPEEFY 61
Query: 78 KPLPEASLPFHRAMPGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNS 137
+ E P +A P + H+ L +LE+ G+++ VI+QN+D LH R+G +K+ EL+GN
Sbjct: 62 RFAKEGIFPMLQAKPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAG--SKKVIELYGNV 119
Query: 138 FMEACPSCGSEYFRDFEVETIGLKETSRR---CSDLKCGAKLRDTVLDWEDALPPKEMNP 194
C C +Y VE + K S C D C + +R ++ + + LP +
Sbjct: 120 EEYYCVRCEKKY----TVEDVIKKLESSDVPLCDD--CNSLIRPNIVFFGENLPQDALRE 173
Query: 195 AEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASL 247
A A +++ LG+SL + PA LPL +R GGK+VIVNL +TP D A+L
Sbjct: 174 AIGLSSRASLMIVLGSSLVVYPAAELPLITVRSGGKLVIVNLGETPFDDIATL 226
>pdb|1M2G|A Chain A, Sir2 Homologue-Adp Ribose Complex
Length = 249
Score = 129 bits (325), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 89/254 (35%), Positives = 129/254 (50%), Gaps = 28/254 (11%)
Query: 35 EQLAKLIQKSKHLVVFTGAGISTSCGIPDFRGPNGIWTLQRE---GKPLPEASLP----- 86
E+L K I +SK+LV TGAG+S GIP FRG +G+W R P A P
Sbjct: 3 EKLLKTIAESKYLVALTGAGVSAESGIPTFRGKDGLWNRYRPEELANPQAFAKDPEKVWK 62
Query: 87 --------FHRAMPGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSF 138
A P H A ELE+ G+LK +I+QNVD LH R+G + LHG+
Sbjct: 63 WYAWRMEKVFNAQPNKAHQAFAELERLGVLKCLITQNVDDLHERAG--SRNVIHLHGSLR 120
Query: 139 MEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLRDTVLDWEDALPPKEMNPAEKH 198
+ C SC + FEVE+ +C KCG+ LR V+ + + LPP ++ A +
Sbjct: 121 VVRCTSCNN----SFEVESAPKIPPLPKCD--KCGSLLRPGVVWFGEMLPPDVLDRAMRE 174
Query: 199 CKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHG----FVD 254
+ ADV++ GTS + PA +LPL + GG I+ +N +TP A + G +D
Sbjct: 175 VERADVIIVAGTSAVVQPAASLPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVMD 234
Query: 255 KVVAGVMDLLNLRI 268
++V V L+L++
Sbjct: 235 ELVRHVRKALSLKL 248
>pdb|2H59|A Chain A, Sir2 H116a-Deacetylated P53 Peptide-3'-O-Acetyl Adp Ribose
pdb|2H59|B Chain B, Sir2 H116a-Deacetylated P53 Peptide-3'-O-Acetyl Adp Ribose
pdb|3JR3|A Chain A, Sir2 Bound To Acetylated Peptide
Length = 246
Score = 129 bits (323), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 83/233 (35%), Positives = 123/233 (52%), Gaps = 26/233 (11%)
Query: 33 KIEQLAKLIQKSKHLVVFTGAGISTSCGIPDFRGPNGIWTLQREG--------------- 77
K+++ L+ +S+ V TGAGIST GIPDFRGPNGI+ +
Sbjct: 2 KMKEFLDLLNESRLTVTLTGAGISTPSGIPDFRGPNGIYKKYSQNVFDIDFFYSHPEEFY 61
Query: 78 KPLPEASLPFHRAMPGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNS 137
+ E P +A P + H+ L +LE+ G+++ VI+QN+D LH R+G +K+ EL GN
Sbjct: 62 RFAKEGIFPMLQAKPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAG--SKKVIELAGNV 119
Query: 138 FMEACPSCGSEYFRDFEVETIGLKETSRR---CSDLKCGAKLRDTVLDWEDALPPKEMNP 194
C C +Y VE + K S C D C + +R ++ + + LP +
Sbjct: 120 EEYYCVRCEKKY----TVEDVIKKLESSDVPLCDD--CNSLIRPNIVFFGENLPQDALRE 173
Query: 195 AEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASL 247
A A +++ LG+SL + PA LPL +R GGK+VIVNL +TP D A+L
Sbjct: 174 AIGLSSRASLMIVLGSSLVVYPAAELPLITVRSGGKLVIVNLGETPFDDIATL 226
>pdb|1M2H|A Chain A, Sir2 Homologue S24a Mutant-adp Ribose Complex
Length = 249
Score = 128 bits (322), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 88/254 (34%), Positives = 129/254 (50%), Gaps = 28/254 (11%)
Query: 35 EQLAKLIQKSKHLVVFTGAGISTSCGIPDFRGPNGIWTLQRE---GKPLPEASLP----- 86
E+L K I +SK+LV TGAG++ GIP FRG +G+W R P A P
Sbjct: 3 EKLLKTIAESKYLVALTGAGVAAESGIPTFRGKDGLWNRYRPEELANPQAFAKDPEKVWK 62
Query: 87 --------FHRAMPGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSF 138
A P H A ELE+ G+LK +I+QNVD LH R+G + LHG+
Sbjct: 63 WYAWRMEKVFNAQPNKAHQAFAELERLGVLKCLITQNVDDLHERAG--SRNVIHLHGSLR 120
Query: 139 MEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLRDTVLDWEDALPPKEMNPAEKH 198
+ C SC + FEVE+ +C KCG+ LR V+ + + LPP ++ A +
Sbjct: 121 VVRCTSCNN----SFEVESAPKIPPLPKCD--KCGSLLRPGVVWFGEMLPPDVLDRAMRE 174
Query: 199 CKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHG----FVD 254
+ ADV++ GTS + PA +LPL + GG I+ +N +TP A + G +D
Sbjct: 175 VERADVIIVAGTSAVVQPAASLPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVMD 234
Query: 255 KVVAGVMDLLNLRI 268
++V V L+L++
Sbjct: 235 ELVRHVRKALSLKL 248
>pdb|1M2K|A Chain A, Sir2 Homologue F159a Mutant-Adp Ribose Complex
Length = 249
Score = 128 bits (322), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 89/254 (35%), Positives = 128/254 (50%), Gaps = 28/254 (11%)
Query: 35 EQLAKLIQKSKHLVVFTGAGISTSCGIPDFRGPNGIWTLQRE---GKPLPEASLP----- 86
E+L K I +SK+LV TGAG+S GIP FRG +G+W R P A P
Sbjct: 3 EKLLKTIAESKYLVALTGAGVSAESGIPTFRGKDGLWNRYRPEELANPQAFAKDPEKVWK 62
Query: 87 --------FHRAMPGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSF 138
A P H A ELE+ G+LK +I+QNVD LH R+G + LHG+
Sbjct: 63 WYAWRMEKVFNAQPNKAHQAFAELERLGVLKCLITQNVDDLHERAG--SRNVIHLHGSLR 120
Query: 139 MEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLRDTVLDWEDALPPKEMNPAEKH 198
+ C SC + FEVE+ +C KCG+ LR V+ + LPP ++ A +
Sbjct: 121 VVRCTSCNN----SFEVESAPKIPPLPKCD--KCGSLLRPGVVWAGEMLPPDVLDRAMRE 174
Query: 199 CKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHG----FVD 254
+ ADV++ GTS + PA +LPL + GG I+ +N +TP A + G +D
Sbjct: 175 VERADVIIVAGTSAVVQPAASLPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVMD 234
Query: 255 KVVAGVMDLLNLRI 268
++V V L+L++
Sbjct: 235 ELVRHVRKALSLKL 248
>pdb|1ICI|A Chain A, Crystal Structure Of A Sir2 Homolog-Nad Complex
pdb|1ICI|B Chain B, Crystal Structure Of A Sir2 Homolog-Nad Complex
Length = 256
Score = 127 bits (319), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 85/239 (35%), Positives = 121/239 (50%), Gaps = 24/239 (10%)
Query: 35 EQLAKLIQKSKHLVVFTGAGISTSCGIPDFRGPNGIWTLQRE---GKPLPEASLP----- 86
E+L K I +SK+LV TGAG+S GIP FRG +G+W R P A P
Sbjct: 14 EKLLKTIAESKYLVALTGAGVSAESGIPTFRGKDGLWNRYRPEELANPQAFAKDPEKVWK 73
Query: 87 --------FHRAMPGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSF 138
A P H A ELE+ G+LK +I+QNVD LH R+G + LHG+
Sbjct: 74 WYAWRMEKVFNAQPNKAHQAFAELERLGVLKCLITQNVDDLHERAG--SRNVIHLHGSLR 131
Query: 139 MEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLRDTVLDWEDALPPKEMNPAEKH 198
+ C SC + FEVE+ +C KCG+ LR V+ + + LPP ++ A +
Sbjct: 132 VVRCTSCNN----SFEVESAPKIPPLPKCD--KCGSLLRPGVVWFGEMLPPDVLDRAMRE 185
Query: 199 CKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVV 257
+ ADV++ GTS + PA +LPL + GG I+ +N +TP A + G +V+
Sbjct: 186 VERADVIIVAGTSAVVQPAASLPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVM 244
>pdb|1M2J|A Chain A, Sir2 Homologue H80n Mutant-Adp Ribose Complex
Length = 249
Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 88/254 (34%), Positives = 129/254 (50%), Gaps = 28/254 (11%)
Query: 35 EQLAKLIQKSKHLVVFTGAGISTSCGIPDFRGPNGIWTLQRE---GKPLPEASLP----- 86
E+L K I +SK+LV TGAG+S GIP FRG +G+W R P A P
Sbjct: 3 EKLLKTIAESKYLVALTGAGVSAESGIPTFRGKDGLWNRYRPEELANPQAFAKDPEKVWK 62
Query: 87 --------FHRAMPGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSF 138
A P + A ELE+ G+LK +I+QNVD LH R+G + LHG+
Sbjct: 63 WYAWRMEKVFNAQPNKANQAFAELERLGVLKCLITQNVDDLHERAG--SRNVIHLHGSLR 120
Query: 139 MEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLRDTVLDWEDALPPKEMNPAEKH 198
+ C SC + FEVE+ +C KCG+ LR V+ + + LPP ++ A +
Sbjct: 121 VVRCTSCNN----SFEVESAPKIPPLPKCD--KCGSLLRPGVVWFGEMLPPDVLDRAMRE 174
Query: 199 CKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHG----FVD 254
+ ADV++ GTS + PA +LPL + GG I+ +N +TP A + G +D
Sbjct: 175 VERADVIIVAGTSAVVQPAASLPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVMD 234
Query: 255 KVVAGVMDLLNLRI 268
++V V L+L++
Sbjct: 235 ELVRHVRKALSLKL 248
>pdb|1MA3|A Chain A, Structure Of A Sir2 Enzyme Bound To An Acetylated P53
Peptide
pdb|1S7G|A Chain A, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|B Chain B, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|C Chain C, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|D Chain D, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|E Chain E, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1YC2|A Chain A, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|B Chain B, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|C Chain C, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|D Chain D, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|E Chain E, Sir2af2-Nad-Adpribose-Nicotinamide
Length = 253
Score = 123 bits (308), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 84/249 (33%), Positives = 128/249 (51%), Gaps = 21/249 (8%)
Query: 30 LQEKIEQLAKLIQKSKHLVVFTGAGISTSCGIPDFRGPNGIWT------------LQREG 77
++++I + A+++ KSKH VVFTGAGIS GIP FRG +G+W +R
Sbjct: 1 MEDEIRKAAEILAKSKHAVVFTGAGISAESGIPTFRGEDGLWRKYDPEEVASISGFKRNP 60
Query: 78 KPLPEASLPFHR---AMPGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELH 134
+ E S+ A P H A+ ELE+ GI+K VI+QN+D LH R+G R + ELH
Sbjct: 61 RAFWEFSMEMKDKLFAEPNPAHYAIAELERMGIVKAVITQNIDMLHQRAGSRR--VLELH 118
Query: 135 GNSFMEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGA-KLRDTVLDWEDALPPKEMN 193
G+ C C Y VE E RC KCG+ ++ V+ + + LP + +
Sbjct: 119 GSMDKLDCLDCHETYDWSEFVEDFNKGEIP-RCR--KCGSYYVKPRVVLFGEPLPQRTLF 175
Query: 194 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFV 253
A + K D + +G+SL + PA LP + G K++IVN + T D + I G
Sbjct: 176 EAIEEAKHCDAFMVVGSSLVVYPAAELPYIAKKAGAKMIIVNAEPTMADPIFDVKIIGKA 235
Query: 254 DKVVAGVMD 262
+V+ +++
Sbjct: 236 GEVLPKIVE 244
>pdb|3JWP|A Chain A, Crystal Structure Of Plasmodium Falciparum Sir2a
(Pf13_0152) In Complex With Amp
Length = 265
Score = 98.6 bits (244), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 111/234 (47%), Gaps = 28/234 (11%)
Query: 34 IEQLAKLIQKSKHLVVFTGAGISTSCGIPDFRGP-NGIW---------TLQREGKPLPEA 83
+E+LAK+I+K KH+V TG+G S IP FRG N IW T+ K PE
Sbjct: 10 LEELAKIIKKCKHVVALTGSGTSAESNIPSFRGSSNSIWSKYDPRIYGTIWGFWK-YPEK 68
Query: 84 SLPFHRAMPG-------MTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGN 136
R + H+AL LE G LK V++QNVDGLH SG K+ LHGN
Sbjct: 69 IWEVIRDISSDYEIEINNGHVALSTLESLGYLKSVVTQNVDGLHEASG--NTKVISLHGN 126
Query: 137 SFMEACPSCGSEYFRDFEVETIGLKETSRRCSDL----KCGAKLRDTVLDWEDALPPKEM 192
F C +C + ++ I L++TS L CG + ++ + + + +
Sbjct: 127 VFEAVCCTCN----KIVKLNKIXLQKTSHFXHQLPPECPCGGIFKPNIILFGEVVSSDLL 182
Query: 193 NPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKAS 246
AE+ D++L +GTS ++ A NL + KIV +N+ KT K S
Sbjct: 183 KEAEEEIAKCDLLLVIGTSSTVSTATNLCHFACKKKKKIVEINISKTYITNKXS 236
>pdb|3U31|A Chain A, Plasmodium Falciparum Sir2a Preferentially Hydrolyzes
Medium And Long Chain Fatty Acyl Lysine
pdb|3U3D|A Chain A, Plasmodium Falciparum Sir2a Preferentially Hydrolyzes
Medium And Long Chain Fatty Acyl Lysine
Length = 290
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 111/234 (47%), Gaps = 28/234 (11%)
Query: 34 IEQLAKLIQKSKHLVVFTGAGISTSCGIPDFRGP-NGIW---------TLQREGKPLPEA 83
+E+LAK+I+K KH+V TG+G S IP FRG N IW T+ K PE
Sbjct: 35 LEELAKIIKKCKHVVALTGSGTSAESNIPSFRGSSNSIWSKYDPRIYGTIWGFWK-YPEK 93
Query: 84 SLPFHRAMPG-------MTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGN 136
R + H+AL LE G LK V++QNVDGLH SG K+ LHGN
Sbjct: 94 IWEVIRDISSDYEIEINNGHVALSTLESLGYLKSVVTQNVDGLHEASG--NTKVISLHGN 151
Query: 137 SFMEACPSCGSEYFRDFEVETIGLKETSRRCSDL----KCGAKLRDTVLDWEDALPPKEM 192
F C +C + ++ I L++TS L CG + ++ + + + +
Sbjct: 152 VFEAVCCTCN----KIVKLNKIMLQKTSHFMHQLPPECPCGGIFKPNIILFGEVVSSDLL 207
Query: 193 NPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKAS 246
AE+ D++L +GTS ++ A NL + KIV +N+ KT K S
Sbjct: 208 KEAEEEIAKCDLLLVIGTSSTVSTATNLCHFACKKKKKIVEINISKTYITNKMS 261
>pdb|2B4Y|A Chain A, Crystal Structure Of Human Sirtuin Homolog 5
pdb|2B4Y|B Chain B, Crystal Structure Of Human Sirtuin Homolog 5
pdb|2B4Y|C Chain C, Crystal Structure Of Human Sirtuin Homolog 5
pdb|2B4Y|D Chain D, Crystal Structure Of Human Sirtuin Homolog 5
Length = 271
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 104/249 (41%), Gaps = 38/249 (15%)
Query: 39 KLIQKSKHLVVFTGAGISTSCGIPDFRGPNGI---WTLQREGKPLPEASLP--------F 87
K K+KH+V+ +GAG+S G+P FRG G W Q PL A P +
Sbjct: 14 KFFAKAKHIVIISGAGVSAESGVPTFRGAGGYWRKWQAQDLATPLAFAHNPSRVWEFYHY 73
Query: 88 HRAM-----PGMTHMALVELE----KAGILKFVISQNVDGLHLRSGIPREKLAELHGNSF 138
R + P H A+ E E K G VI+QN+D LH ++G + L E+HG+ F
Sbjct: 74 RREVXGSKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGT--KNLLEIHGSLF 131
Query: 139 MEACPSCG--SEYFRDFEVETIGLK--------------ETSRRCSDLKCGAKLRDTVLD 182
C SCG +E ++ + K E RC + CG LR V+
Sbjct: 132 KTRCTSCGVVAENYKSPICPALSGKGAPEPGTQDASIPVEKLPRCEEAGCGGLLRPHVVW 191
Query: 183 WEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKD 242
+ + L P + ++ D+ L +GTS + PA + G + N + TP
Sbjct: 192 FGENLDPAILEEVDRELAHCDLCLVVGTSSVVYPAAXFAPQVAARGVPVAEFNTETTPAT 251
Query: 243 KKASLVIHG 251
+ G
Sbjct: 252 NRFRFHFQG 260
>pdb|3RIG|A Chain A, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And
Desuccinylase
pdb|3RIG|B Chain B, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And
Desuccinylase
pdb|3RIY|A Chain A, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And
Desuccinylase
pdb|3RIY|B Chain B, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And
Desuccinylase
pdb|4F4U|A Chain A, The Bicyclic Intermediate Structure Provides Insights Into
The Desuccinylation Mechanism Of Sirt5
pdb|4F4U|B Chain B, The Bicyclic Intermediate Structure Provides Insights Into
The Desuccinylation Mechanism Of Sirt5
pdb|4F56|A Chain A, The Bicyclic Intermediate Structure Provides Insights Into
The Desuccinylation Mechanism Of Sirt5
pdb|4F56|B Chain B, The Bicyclic Intermediate Structure Provides Insights Into
The Desuccinylation Mechanism Of Sirt5
Length = 273
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 104/249 (41%), Gaps = 38/249 (15%)
Query: 39 KLIQKSKHLVVFTGAGISTSCGIPDFRGPNGI---WTLQREGKPLPEASLP--------F 87
K K+KH+V+ +GAG+S G+P FRG G W Q PL A P +
Sbjct: 16 KFFAKAKHIVIISGAGVSAESGVPTFRGAGGYWRKWQAQDLATPLAFAHNPSRVWEFYHY 75
Query: 88 HRAM-----PGMTHMALVELE----KAGILKFVISQNVDGLHLRSGIPREKLAELHGNSF 138
R + P H A+ E E K G VI+QN+D LH ++G + L E+HG+ F
Sbjct: 76 RREVMGSKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGT--KNLLEIHGSLF 133
Query: 139 MEACPSCG--SEYFRDFEVETIGLK--------------ETSRRCSDLKCGAKLRDTVLD 182
C SCG +E ++ + K E RC + CG LR V+
Sbjct: 134 KTRCTSCGVVAENYKSPICPALSGKGAPEPGTQDASIPVEKLPRCEEAGCGGLLRPHVVW 193
Query: 183 WEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKD 242
+ + L P + ++ D+ L +GTS + PA + G + N + TP
Sbjct: 194 FGENLDPAILEEVDRELAHCDLCLVVGTSSVVYPAAMFAPQVAARGVPVAEFNTETTPAT 253
Query: 243 KKASLVIHG 251
+ G
Sbjct: 254 NRFRFHFQG 262
>pdb|4HDA|A Chain A, Crystal Structure Of Human Sirt5 In Complex With
Fluor-de-lys Peptide And Resveratrol
pdb|4HDA|B Chain B, Crystal Structure Of Human Sirt5 In Complex With
Fluor-de-lys Peptide And Resveratrol
Length = 275
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 104/249 (41%), Gaps = 38/249 (15%)
Query: 39 KLIQKSKHLVVFTGAGISTSCGIPDFRGPNGI---WTLQREGKPLPEASLP--------F 87
K K+KH+V+ +GAG+S G+P FRG G W Q PL A P +
Sbjct: 18 KFFAKAKHIVIISGAGVSAESGVPTFRGAGGYWRKWQAQDLATPLAFAHNPSRVWEFYHY 77
Query: 88 HRAM-----PGMTHMALVELE----KAGILKFVISQNVDGLHLRSGIPREKLAELHGNSF 138
R + P H A+ E E K G VI+QN+D LH ++G + L E+HG+ F
Sbjct: 78 RREVMGSKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGT--KNLLEIHGSLF 135
Query: 139 MEACPSCG--SEYFRDFEVETIGLK--------------ETSRRCSDLKCGAKLRDTVLD 182
C SCG +E ++ + K E RC + CG LR V+
Sbjct: 136 KTRCTSCGVVAENYKSPICPALSGKGAPEPGTQDASIPVEKLPRCEEAGCGGLLRPHVVW 195
Query: 183 WEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKD 242
+ + L P + ++ D+ L +GTS + PA + G + N + TP
Sbjct: 196 FGENLDPAILEEVDRELAHCDLCLVVGTSSVVYPAAMFAPQVAARGVPVAEFNTETTPAT 255
Query: 243 KKASLVIHG 251
+ G
Sbjct: 256 NRFRFHFQG 264
>pdb|4G1C|A Chain A, Human Sirt5 Bound To Succ-Idh2 And Carba-Nad
pdb|4G1C|B Chain B, Human Sirt5 Bound To Succ-Idh2 And Carba-Nad
Length = 267
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 104/249 (41%), Gaps = 38/249 (15%)
Query: 39 KLIQKSKHLVVFTGAGISTSCGIPDFRGPNGI---WTLQREGKPLPEASLP--------F 87
K K+KH+V+ +GAG+S G+P FRG G W Q PL A P +
Sbjct: 10 KFFAKAKHIVIISGAGVSAESGVPTFRGAGGYWRKWQAQDLATPLAFAHNPSRVWEFYHY 69
Query: 88 HRAM-----PGMTHMALVELE----KAGILKFVISQNVDGLHLRSGIPREKLAELHGNSF 138
R + P H A+ E E K G VI+QN+D LH ++G + L E+HG+ F
Sbjct: 70 RREVMGSKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGT--KNLLEIHGSLF 127
Query: 139 MEACPSCG--SEYFRDFEVETIGLK--------------ETSRRCSDLKCGAKLRDTVLD 182
C SCG +E ++ + K E RC + CG LR V+
Sbjct: 128 KTRCTSCGVVAENYKSPICPALSGKGAPEPGTQDASIPVEKLPRCEEAGCGGLLRPHVVW 187
Query: 183 WEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKD 242
+ + L P + ++ D+ L +GTS + PA + G + N + TP
Sbjct: 188 FGENLDPAILEEVDRELAHCDLCLVVGTSSVVYPAAMFAPQVAARGVPVAEFNTETTPAT 247
Query: 243 KKASLVIHG 251
+ G
Sbjct: 248 NRFRFHFQG 256
>pdb|2NYR|A Chain A, Crystal Structure Of Human Sirtuin Homolog 5 In Complex
With Suramin
pdb|2NYR|B Chain B, Crystal Structure Of Human Sirtuin Homolog 5 In Complex
With Suramin
Length = 271
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 104/249 (41%), Gaps = 38/249 (15%)
Query: 39 KLIQKSKHLVVFTGAGISTSCGIPDFRGPNGI---WTLQREGKPLPEASLP--------F 87
K K+KH+V+ +GAG+S G+P FRG G W Q PL A P +
Sbjct: 14 KFFAKAKHIVIISGAGVSAESGVPTFRGAGGYWRKWQAQDLATPLAFAHNPSRVWEFYHY 73
Query: 88 HRAM-----PGMTHMALVELE----KAGILKFVISQNVDGLHLRSGIPREKLAELHGNSF 138
R + P H A+ E E K G VI+QN+D LH ++G + L E+HG+ F
Sbjct: 74 RREVMGSKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGT--KNLLEIHGSLF 131
Query: 139 MEACPSCG--SEYFRDFEVETIGLK--------------ETSRRCSDLKCGAKLRDTVLD 182
C SCG +E ++ + K E RC + CG LR V+
Sbjct: 132 KTRCTSCGVVAENYKSPICPALSGKGAPEPGTQDASIPVEKLPRCEEAGCGGLLRPHVVW 191
Query: 183 WEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKD 242
+ + L P + ++ D+ L +GTS + PA + G + N + TP
Sbjct: 192 FGENLDPAILEEVDRELAHCDLCLVVGTSSVVYPAAMFAPQVAARGVPVAEFNTETTPAT 251
Query: 243 KKASLVIHG 251
+ G
Sbjct: 252 NRFRFHFQG 260
>pdb|3GLR|A Chain A, Crystal Structure Of Human Sirt3 With Acetyl-Lysine Acecs2
Peptide
pdb|3GLS|A Chain A, Crystal Structure Of Human Sirt3
pdb|3GLS|B Chain B, Crystal Structure Of Human Sirt3
pdb|3GLS|C Chain C, Crystal Structure Of Human Sirt3
pdb|3GLS|D Chain D, Crystal Structure Of Human Sirt3
pdb|3GLS|E Chain E, Crystal Structure Of Human Sirt3
pdb|3GLS|F Chain F, Crystal Structure Of Human Sirt3
pdb|3GLT|A Chain A, Crystal Structure Of Human Sirt3 With Adpr Bound To The
Acecs2 Peptide Containing A Thioacetyl Lysine
pdb|3GLU|A Chain A, Crystal Structure Of Human Sirt3 With Acecs2 Peptide
Length = 285
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/210 (31%), Positives = 102/210 (48%), Gaps = 27/210 (12%)
Query: 34 IEQLAKLIQKS--KHLVVFTGAGISTSCGIPDFRGP-NGIWT-LQREGKPLPEA--SLPF 87
++ +A+LI+ + +VV GAGIST GIPDFR P +G+++ LQ+ P PEA LPF
Sbjct: 11 LQDVAELIRARACQRVVVMVGAGISTPSGIPDFRSPGSGLYSNLQQYDLPYPEAIFELPF 70
Query: 88 H-----------------RAMPGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKL 130
P +TH L L G+L + +QN+DGL SGIP KL
Sbjct: 71 FFHNPKPFFTLAKELYPGNYKPNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPASKL 130
Query: 131 AELHGNSFMEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLRDTVLDWEDALPPK 190
E HG C C F ++ + + RC C ++ ++ + + LP +
Sbjct: 131 VEAHGTFASATCTVC-QRPFPGEDIRADVMADRVPRCP--VCTGVVKPDIVFFGEPLPQR 187
Query: 191 EMNPAEKHCKIADVVLCLGTSLQITPACNL 220
+ +AD++L LGTSL++ P +L
Sbjct: 188 FLLHVVDF-PMADLLLILGTSLEVEPFASL 216
>pdb|4FVT|A Chain A, Human Sirt3 Bound To Ac-Acs Peptide And Carba-Nad
Length = 274
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 102/211 (48%), Gaps = 27/211 (12%)
Query: 33 KIEQLAKLIQKS--KHLVVFTGAGISTSCGIPDFRGP-NGIWT-LQREGKPLPEA--SLP 86
++ +A+LI+ + +VV GAGIST GIPDFR P +G+++ LQ+ P PEA LP
Sbjct: 3 SLQDVAELIRARACQRVVVMVGAGISTPSGIPDFRSPGSGLYSNLQQYDLPYPEAIFELP 62
Query: 87 FH-----------------RAMPGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREK 129
F P +TH L L G+L + +QN+DGL SGIP K
Sbjct: 63 FFFHNPKPFFTLAKELYPGNYKPNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPASK 122
Query: 130 LAELHGNSFMEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLRDTVLDWEDALPP 189
L E HG C C F ++ + + RC C ++ ++ + + LP
Sbjct: 123 LVEAHGTFASATCTVC-QRPFPGEDIRADVMADRVPRCP--VCTGVVKPDIVFFGEPLPQ 179
Query: 190 KEMNPAEKHCKIADVVLCLGTSLQITPACNL 220
+ + +AD++L LGTSL++ P +L
Sbjct: 180 RFLLHVVDF-PMADLLLILGTSLEVEPFASL 209
>pdb|4HD8|A Chain A, Crystal Structure Of Human Sirt3 In Complex With
Fluor-de-lys Peptide And Piceatannol
Length = 284
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/210 (31%), Positives = 102/210 (48%), Gaps = 27/210 (12%)
Query: 34 IEQLAKLIQKS--KHLVVFTGAGISTSCGIPDFRGP-NGIWT-LQREGKPLPEA--SLPF 87
++ +A+LI+ + +VV GAGIST GIPDFR P +G+++ LQ+ P PEA LPF
Sbjct: 10 LQDVAELIRARACQRVVVMVGAGISTPSGIPDFRSPGSGLYSNLQQYDLPYPEAIFELPF 69
Query: 88 H-----------------RAMPGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKL 130
P +TH L L G+L + +QN+DGL SGIP KL
Sbjct: 70 FFHNPKPFFTLAKELYPGNYKPNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPASKL 129
Query: 131 AELHGNSFMEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLRDTVLDWEDALPPK 190
E HG C C F ++ + + RC C ++ ++ + + LP +
Sbjct: 130 VEAHGTFASATCTVC-QRPFPGEDIRADVMADRVPRCP--VCTGVVKPDIVFFGEPLPQR 186
Query: 191 EMNPAEKHCKIADVVLCLGTSLQITPACNL 220
+ +AD++L LGTSL++ P +L
Sbjct: 187 FLLHVVDF-PMADLLLILGTSLEVEPFASL 215
>pdb|1J8F|A Chain A, Human Sirt2 Histone Deacetylase
Length = 323
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 105/212 (49%), Gaps = 28/212 (13%)
Query: 34 IEQLAKLIQ--KSKHLVVFTGAGISTSCGIPDFRGPN-GIW-TLQREGKPLPEASL---- 85
+E +A+ +Q + + ++ GAGISTS GIPDFR P+ G++ L++ P PEA
Sbjct: 31 LEGVARYMQSERCRRVICLVGAGISTSAGIPDFRSPSTGLYDNLEKYHLPYPEAIFEISY 90
Query: 86 ------PFH---------RAMPGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKL 130
PF + P + H + L+ G+L +QN+D L +G+ +E L
Sbjct: 91 FKKHPEPFFALAKELYPGQFKPTICHYFMRLLKDKGLLLRCYTQNIDTLERIAGLEQEDL 150
Query: 131 AELHGNSFMEAC--PSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLRDTVLDWEDALP 188
E HG + C SC EY + E I E + +C D C + ++ ++ + ++LP
Sbjct: 151 VEAHGTFYTSHCVSASCRHEYPLSWMKEKI-FSEVTPKCED--CQSLVKPDIVFFGESLP 207
Query: 189 PKEMNPAEKHCKIADVVLCLGTSLQITPACNL 220
+ + + D++L +GTSLQ+ P +L
Sbjct: 208 ARFFSCMQSDFLKVDLLLVMGTSLQVQPFASL 239
>pdb|1J8F|C Chain C, Human Sirt2 Histone Deacetylase
pdb|1J8F|B Chain B, Human Sirt2 Histone Deacetylase
Length = 323
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 105/212 (49%), Gaps = 28/212 (13%)
Query: 34 IEQLAKLIQ--KSKHLVVFTGAGISTSCGIPDFRGPN-GIW-TLQREGKPLPEASL---- 85
+E +A+ +Q + + ++ GAGISTS GIPDFR P+ G++ L++ P PEA
Sbjct: 31 LEGVARYMQSERCRRVICLVGAGISTSAGIPDFRSPSTGLYDNLEKYHLPYPEAIFEISY 90
Query: 86 ------PFH---------RAMPGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKL 130
PF + P + H + L+ G+L +QN+D L +G+ +E L
Sbjct: 91 FKKHPEPFFALAKELYPGQFKPTICHYFMRLLKDKGLLLRCYTQNIDTLERIAGLEQEDL 150
Query: 131 AELHGNSFMEAC--PSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLRDTVLDWEDALP 188
E HG + C SC EY + E I E + +C D C + ++ ++ + ++LP
Sbjct: 151 VEAHGTFYTSHCVSASCRHEYPLSWMKEKI-FSEVTPKCED--CQSLVKPDIVFFGESLP 207
Query: 189 PKEMNPAEKHCKIADVVLCLGTSLQITPACNL 220
+ + + D++L +GTSLQ+ P +L
Sbjct: 208 ARFFSCMQSDFLKVDLLLVMGTSLQVQPFASL 239
>pdb|2OD7|A Chain A, Crystal Structure Of Yhst2 Bound To The Intermediate
Analogue Adp-Hpd, And And Aceylated H4 Peptide
pdb|2OD9|A Chain A, Structural Basis For Nicotinamide Inhibition And Base
Exchange In Sir2 Enzymes
pdb|2QQF|A Chain A, Hst2 Bound To Adp-Hpd And Acetylated Histone H4
pdb|2QQG|A Chain A, Hst2 Bound To Adp-hpd, Acetyllated Histone H4 And
Nicotinamide
Length = 308
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 79/295 (26%), Positives = 128/295 (43%), Gaps = 53/295 (17%)
Query: 19 GMAEFFDSPQILQEKIEQLAKLIQKSKH--LVVFTGAGISTSCGIPDFRGP-NGIW-TLQ 74
GMA S + + ++A ++ + + ++ GAGISTSCGIPDFR P G++ L
Sbjct: 11 GMASMSVSTASTEMSVRKIAAHMKSNPNAKVIFMVGAGISTSCGIPDFRSPGTGLYHNLA 70
Query: 75 REGKPLPEA----------SLPFHRAM---------PGMTHMALVELEKAGILKFVISQN 115
R P PEA LPF+ P H L + +LK V +QN
Sbjct: 71 RLKLPYPEAVFDVDFFQSDPLPFYTLAKELYPGNFRPSKFHYLLKLFQDKDVLKRVYTQN 130
Query: 116 VDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFRDFEVETIGLKETSRRCSDL----K 171
+D L ++G+ + + E HG+ C CG Y + K D
Sbjct: 131 IDTLERQAGVKDDLIIEAHGSFAHCHCIGCGKVY----PPQVFKSKLAEHPIKDFVKCDV 186
Query: 172 CGAKLRDTVL----DWEDALPPKEMNPAE----------KHCKIADVVLCLGTSLQITPA 217
CG ++ ++ D D+ +N +E KH + +V+ +GTSL + P
Sbjct: 187 CGELVKPAIVFFGEDLPDSFSETWLNDSEWLREKITTSGKHPQ-QPLVIVVGTSLAVYPF 245
Query: 218 CNLPLKCLRGGGKIVIVNLQKTPKDKKAS-----LVIHGFVDKVVAGVMDLLNLR 267
+LP + R K V+ NL+ T D KA+ L++H + D+ +++ L +
Sbjct: 246 ASLPEEIPR-KVKRVLCNLE-TVGDFKANKRPTDLIVHQYSDEFAEQLVEELGWQ 298
>pdb|1Q17|A Chain A, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
pdb|1Q17|B Chain B, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
pdb|1Q17|C Chain C, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
Length = 300
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 79/295 (26%), Positives = 128/295 (43%), Gaps = 53/295 (17%)
Query: 19 GMAEFFDSPQILQEKIEQLAKLIQKSKH--LVVFTGAGISTSCGIPDFRGP-NGIW-TLQ 74
GMA S + + ++A ++ + + ++ GAGISTSCGIPDFR P G++ L
Sbjct: 3 GMASMSVSTASTEMSVRKIAAHMKSNPNAKVIFMVGAGISTSCGIPDFRSPGTGLYHNLA 62
Query: 75 REGKPLPEA----------SLPFHRAM---------PGMTHMALVELEKAGILKFVISQN 115
R P PEA LPF+ P H L + +LK V +QN
Sbjct: 63 RLKLPYPEAVFDVDFFQSDPLPFYTLAKELYPGNFRPSKFHYLLKLFQDKDVLKRVYTQN 122
Query: 116 VDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFRDFEVETIGLKETSRRCSDL----K 171
+D L ++G+ + + E HG+ C CG Y + K D
Sbjct: 123 IDTLERQAGVKDDLIIEAHGSFAHCHCIGCGKVY----PPQVFKSKLAEHPIKDFVKCDV 178
Query: 172 CGAKLRDTVL----DWEDALPPKEMNPAE----------KHCKIADVVLCLGTSLQITPA 217
CG ++ ++ D D+ +N +E KH + +V+ +GTSL + P
Sbjct: 179 CGELVKPAIVFFGEDLPDSFSETWLNDSEWLREKITTSGKHPQ-QPLVIVVGTSLAVYPF 237
Query: 218 CNLPLKCLRGGGKIVIVNLQKTPKDKKAS-----LVIHGFVDKVVAGVMDLLNLR 267
+LP + R K V+ NL+ T D KA+ L++H + D+ +++ L +
Sbjct: 238 ASLPEEIPR-KVKRVLCNLE-TVGDFKANKRPTDLIVHQYSDEFAEQLVEELGWQ 290
>pdb|1SZC|A Chain A, Structural Basis For Nicotinamide Cleavage And Adp-Ribose
Transfer By Nad+-Dependent Sir2 HistonePROTEIN
DEACETYLASES
pdb|1SZD|A Chain A, Structural Basis For Nicotinamide Cleavage And Adp-Ribose
Transfer By Nad+-Dependent Sir2 HistonePROTEIN
DEACETYLASES
Length = 297
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 74/265 (27%), Positives = 115/265 (43%), Gaps = 51/265 (19%)
Query: 47 LVVFTGAGISTSCGIPDFRGP-NGIW-TLQREGKPLPEA----------SLPFHRAM--- 91
++ GAGISTSCGIPDFR P G++ L R P PEA LPF+
Sbjct: 30 VIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTLAKEL 89
Query: 92 ------PGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSC 145
P H L + +LK V +QN+D L ++G+ + + E HG+ C C
Sbjct: 90 YPGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGC 149
Query: 146 GSEYFRDFEVETIGLKETSRRCSDL----KCGAKLRDTVL----DWEDALPPKEMNPAE- 196
G Y + K D CG ++ ++ D D+ +N +E
Sbjct: 150 GKVY----PPQVFKSKLAEHPIKDFVKCDVCGELVKPAIVFFGEDLPDSFSETWLNDSEW 205
Query: 197 ---------KHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKAS- 246
KH + +V+ +GTSL + P +LP + R K V+ NL+ T D KA+
Sbjct: 206 LREKITTSGKHPQ-QPLVIVVGTSLAVYPFASLPEEIPR-KVKRVLCNLE-TVGDFKANK 262
Query: 247 ----LVIHGFVDKVVAGVMDLLNLR 267
L++H + D+ +++ L +
Sbjct: 263 RPTDLIVHQYSDEFAEQLVEELGWQ 287
>pdb|1Q14|A Chain A, Structure And Autoregulation Of The Yeast Hst2 Homolog Of
Sir2
Length = 361
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 127/292 (43%), Gaps = 53/292 (18%)
Query: 19 GMAEFFDSPQILQEKIEQLAKLIQKSKH--LVVFTGAGISTSCGIPDFRGP-NGIW-TLQ 74
GMA S + + ++A ++ + + ++ GAGISTSCGIPDFR P G++ L
Sbjct: 1 GMASMSVSTASTEMSVRKIAAHMKSNPNAKVIFMVGAGISTSCGIPDFRSPGTGLYHNLA 60
Query: 75 REGKPLPEA----------SLPFHRAM---------PGMTHMALVELEKAGILKFVISQN 115
R P PEA LPF+ P H L + +LK V +QN
Sbjct: 61 RLKLPYPEAVFDVDFFQSDPLPFYTLAKELYPGNFRPSKFHYLLKLFQDKDVLKRVYTQN 120
Query: 116 VDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFRDFEVETIGLKETSRRCSDL----K 171
+D L ++G+ + + E HG+ C CG Y + K D
Sbjct: 121 IDTLERQAGVKDDLIIEAHGSFAHCHCIGCGKVY----PPQVFKSKLAEHPIKDFVKCDV 176
Query: 172 CGAKLRDTVL----DWEDALPPKEMNPAE----------KHCKIADVVLCLGTSLQITPA 217
CG ++ ++ D D+ +N +E KH + +V+ +GTSL + P
Sbjct: 177 CGELVKPAIVFFGEDLPDSFSETWLNDSEWLREKITTSGKHPQ-QPLVIVVGTSLAVYPF 235
Query: 218 CNLPLKCLRGGGKIVIVNLQKTPKDKKAS-----LVIHGFVDKVVAGVMDLL 264
+LP + R K V+ NL+ T D KA+ L++H + D+ +++ L
Sbjct: 236 ASLPEEIPR-KVKRVLCNLE-TVGDFKANKRPTDLIVHQYSDEFAEQLVEEL 285
>pdb|1Q1A|A Chain A, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
Length = 289
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 74/265 (27%), Positives = 115/265 (43%), Gaps = 51/265 (19%)
Query: 47 LVVFTGAGISTSCGIPDFRGP-NGIW-TLQREGKPLPEA----------SLPFHRAM--- 91
++ GAGISTSCGIPDFR P G++ L R P PEA LPF+
Sbjct: 23 VIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTLAKEL 82
Query: 92 ------PGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSC 145
P H L + +LK V +QN+D L ++G+ + + E HG+ C C
Sbjct: 83 YPGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGC 142
Query: 146 GSEYFRDFEVETIGLKETSRRCSDL----KCGAKLRDTVL----DWEDALPPKEMNPAE- 196
G Y + K D CG ++ ++ D D+ +N +E
Sbjct: 143 GKVY----PPQVFKSKLAEHPIKDFVKCDVCGELVKPAIVFFGEDLPDSFSETWLNDSEW 198
Query: 197 ---------KHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKAS- 246
KH + +V+ +GTSL + P +LP + R K V+ NL+ T D KA+
Sbjct: 199 LREKITTSGKHPQ-QPLVIVVGTSLAVYPFASLPEEIPR-KVKRVLCNLE-TVGDFKANK 255
Query: 247 ----LVIHGFVDKVVAGVMDLLNLR 267
L++H + D+ +++ L +
Sbjct: 256 RPTDLIVHQYSDEFAEQLVEELGWQ 280
>pdb|2OD2|A Chain A, Crystal Structure Of Yhst2 I117f Mutant Bound To
Carba-Nad+ And An Acetylated H4 Peptide
Length = 308
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 79/295 (26%), Positives = 127/295 (43%), Gaps = 53/295 (17%)
Query: 19 GMAEFFDSPQILQEKIEQLAKLIQKSKH--LVVFTGAGISTSCGIPDFRGP-NGIW-TLQ 74
GMA S + + ++A ++ + + ++ GAGISTSCGIPDFR P G++ L
Sbjct: 11 GMASMSVSTASTEMSVRKIAAHMKSNPNAKVIFMVGAGISTSCGIPDFRSPGTGLYHNLA 70
Query: 75 REGKPLPEA----------SLPFHRAM---------PGMTHMALVELEKAGILKFVISQN 115
R P PEA LPF+ P H L + +LK V +QN
Sbjct: 71 RLKLPYPEAVFDVDFFQSDPLPFYTLAKELYPGNFRPSKFHYLLKLFQDKDVLKRVYTQN 130
Query: 116 VDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFRDFEVETIGLKETSRRCSDL----K 171
D L ++G+ + + E HG+ C CG Y + K D
Sbjct: 131 FDTLERQAGVKDDLIIEAHGSFAHCHCIGCGKVY----PPQVFKSKLAEHPIKDFVKCDV 186
Query: 172 CGAKLRDTVL----DWEDALPPKEMNPAE----------KHCKIADVVLCLGTSLQITPA 217
CG ++ ++ D D+ +N +E KH + +V+ +GTSL + P
Sbjct: 187 CGELVKPAIVFFGEDLPDSFSETWLNDSEWLREKITTSGKHPQ-QPLVIVVGTSLAVYPF 245
Query: 218 CNLPLKCLRGGGKIVIVNLQKTPKDKKAS-----LVIHGFVDKVVAGVMDLLNLR 267
+LP + R K V+ NL+ T D KA+ L++H + D+ +++ L +
Sbjct: 246 ASLPEEIPR-KVKRVLCNLE-TVGDFKANKRPTDLIVHQYSDEFAEQLVEELGWQ 298
>pdb|4I5I|A Chain A, Crystal Structure Of The Sirt1 Catalytic Domain Bound To
Nad And An Ex527 Analog
pdb|4I5I|B Chain B, Crystal Structure Of The Sirt1 Catalytic Domain Bound To
Nad And An Ex527 Analog
Length = 287
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 104/217 (47%), Gaps = 36/217 (16%)
Query: 34 IEQLAKLIQKSKHLVVFTGAGISTSCGIPDFRGPNGIW---TLQREGKPLPEASL----- 85
IE KL+Q+ K ++V TGAG+S SCGIPDFR +GI+ + P P+A
Sbjct: 6 IEDAVKLLQECKKIIVLTGAGVSVSCGIPDFRSRDGIYARLAVDFPDLPDPQAMFDIEYF 65
Query: 86 -----PFHR---------AMPGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLA 131
PF + P + H + +K G L +QN+D L +GI +++
Sbjct: 66 RKDPRPFFKFAKEIYPGQFQPSLCHKFIALSDKEGKLLRNYTQNIDTLEQVAGI--QRII 123
Query: 132 ELHGNSFMEACPSCGSEYFRDFE-VETIGLKETSRRCSDLKCGAK-----LRDTVLDWED 185
+ HG+ +C C +Y D E V + RC +C A ++ ++ + +
Sbjct: 124 QCHGSFATASCLIC--KYKVDCEAVRGDIFNQVVPRCP--RCPADEPLAIMKPEIVFFGE 179
Query: 186 ALPPKEMNPAEKHCKI-ADVVLCLGTSLQITPACNLP 221
L P++ + A K+ K D+++ +G+SL++ P +P
Sbjct: 180 NL-PEQFHRAMKYDKDEVDLLIVIGSSLKVRPVALIP 215
>pdb|1S5P|A Chain A, Structure And Substrate Binding Properties Of Cobb, A Sir2
Homolog Protein Deacetylase From Eschericia Coli
Length = 235
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 102/241 (42%), Gaps = 37/241 (15%)
Query: 47 LVVFTGAGISTSCGIPDFRGPNGIWTLQR-------EG-KPLPEASLPFHRA-------- 90
++V TGAGIS GI FR +G+W R EG PE F+ A
Sbjct: 4 VLVLTGAGISAESGIRTFRAADGLWEEHRVEDVATPEGFDRDPELVQAFYNARRRQLQQP 63
Query: 91 --MPGMTHMALVELEKA-GILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGS 147
P H+AL +L+ A G +++QN+D LH R+G + +HG C G
Sbjct: 64 EIQPNAAHLALAKLQDALGDRFLLVTQNIDNLHERAG--NTNVIHMHGELLKVRCSQSGQ 121
Query: 148 EYFRDFEVETIGLKETSRRCSDLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLC 207
++ G +C + A LR V+ W +P M+ +AD+ +
Sbjct: 122 ------VLDWTGDVTPEDKCHCCQFPAPLRPHVV-WFGEMPLG-MDEIYMALSMADIFIA 173
Query: 208 LGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKK--------ASLVIHGFVDKVVAG 259
+GTS + PA + G V +NL+ + + AS V+ FV+K++ G
Sbjct: 174 IGTSGHVYPAAGFVHEAKLHGAHTVELNLEPSQVGNEFAEKYYGPASQVVPEFVEKLLKG 233
Query: 260 V 260
+
Sbjct: 234 L 234
>pdb|4IAO|A Chain A, Crystal Structure Of Sir2 C543s Mutant In Complex With Sid
Domain Of Sir4
pdb|4IAO|B Chain B, Crystal Structure Of Sir2 C543s Mutant In Complex With Sid
Domain Of Sir4
Length = 492
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/289 (23%), Positives = 116/289 (40%), Gaps = 56/289 (19%)
Query: 34 IEQLAKLIQKSKHLVVFTGAGISTSCGIPDFRGPNGIWT-LQREGKPLPEASLPFHRAM- 91
I+ + + ++ ++V TGAG+STS GIPDFR G ++ ++ G P+ ++ M
Sbjct: 174 IDHFIQKLHTARKILVLTGAGVSTSLGIPDFRSSEGFYSKIKHLGLDDPQDVFNYNIFMH 233
Query: 92 -PGM-----------------THMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAEL 133
P + H + L+ G L +QN+D L +GI +KL +
Sbjct: 234 DPSVFYNIANMVLPPEKIYSPLHSFIKMLQMKGKLLRNYTQNIDNLESYAGISTDKLVQC 293
Query: 134 HGNSFMEA-------------------------CPSCGS---EYFRDFEVETIGLKETSR 165
HG SF A CP C EYF + +G+ +
Sbjct: 294 HG-SFATATCVTCHWNLPGERIFNKIRNLELPLCPYCYKKRREYFPEGYNNKVGVAASQG 352
Query: 166 RCSD-----LKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNL 220
S+ L L+ + + +ALP K + D+++C+GTSL++ P +
Sbjct: 353 SMSERPPYILNSYGVLKPDITFFGEALPNKFHKSIREDILECDLLICIGTSLKVAPVSEI 412
Query: 221 PLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVVAGVMDLLNLRIP 269
+ + V++N K + L + G+ D + A V IP
Sbjct: 413 -VNMVPSHVPQVLINRDPV-KHAEFDLSLLGYCDDIAAMVAQKCGWTIP 459
>pdb|2HJH|A Chain A, Crystal Structure Of The Sir2 Deacetylase
pdb|2HJH|B Chain B, Crystal Structure Of The Sir2 Deacetylase
Length = 354
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/289 (22%), Positives = 114/289 (39%), Gaps = 56/289 (19%)
Query: 34 IEQLAKLIQKSKHLVVFTGAGISTSCGIPDFRGPNGIWT-LQREGKPLPEASLPFH---- 88
I+ + + ++ ++V TGAG+STS GIPDFR G ++ ++ G P+ ++
Sbjct: 36 IDHFIQKLHTARKILVLTGAGVSTSLGIPDFRSSEGFYSKIKHLGLDDPQDVFNYNIFXH 95
Query: 89 ---------------RAMPGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAEL 133
+ H + L+ G L +QN+D L +GI +KL +
Sbjct: 96 DPSVFYNIANXVLPPEKIYSPLHSFIKXLQXKGKLLRNYTQNIDNLESYAGISTDKLVQC 155
Query: 134 HGNSFMEA-------------------------CPSCGS---EYFRDFEVETIGLKETSR 165
HG SF A CP C EYF + +G+ +
Sbjct: 156 HG-SFATATCVTCHWNLPGERIFNKIRNLELPLCPYCYKKRREYFPEGYNNKVGVAASQG 214
Query: 166 RCSD-----LKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNL 220
S+ L L+ + + +ALP K + D+++C+GTSL++ P +
Sbjct: 215 SXSERPPYILNSYGVLKPDITFFGEALPNKFHKSIREDILECDLLICIGTSLKVAPVSEI 274
Query: 221 PLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVVAGVMDLLNLRIP 269
+ + V++N K + L + G+ D + A V IP
Sbjct: 275 -VNXVPSHVPQVLINRDPV-KHAEFDLSLLGYCDDIAAXVAQKCGWTIP 321
>pdb|3DRA|A Chain A, Candida Albicans Protein Geranylgeranyltransferase-I
Complexed With Ggpp
Length = 306
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 10/79 (12%)
Query: 242 DKKASLVIHGFVDKVVAGVMDLLNLRIPPYIRIDLLQIIVTQSLSSDKK------FVNWT 295
D + + I + ++ +M+L N PY D+L+ + LSSD K + W
Sbjct: 98 DNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAM----LSSDPKNHHVWSYRKWL 153
Query: 296 LRITSVHGQTAQLPFIKSV 314
+ +H +L F+ V
Sbjct: 154 VDTFDLHNDAKELSFVDKV 172
>pdb|2A2D|A Chain A, X-Ray Structure Of Human N-Acetyl Galactosamine Kinase
Complexed With Mn-Amppnp And N-Acetyl Glactosamine
pdb|2A2C|A Chain A, X-Ray Structure Of Human N-Acetyl Galactosamine Kinase
Complexed With Mg-Adp And N-Acetyl Galactosamine 1-
Phosphate
Length = 478
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 7/43 (16%)
Query: 171 KCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQ 213
K G L + +L EDAL P+ NP E + CLG SL+
Sbjct: 294 KLGISLEEMLLVTEDALHPEPYNPEE-------ICRCLGISLE 329
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,343,914
Number of Sequences: 62578
Number of extensions: 538083
Number of successful extensions: 1623
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1522
Number of HSP's gapped (non-prelim): 43
length of query: 465
length of database: 14,973,337
effective HSP length: 102
effective length of query: 363
effective length of database: 8,590,381
effective search space: 3118308303
effective search space used: 3118308303
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)