Query 012378
Match_columns 465
No_of_seqs 241 out of 1289
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 02:00:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012378.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012378hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1905 Class IV sirtuins (SIR 100.0 3.1E-74 6.8E-79 563.4 16.2 330 1-342 12-348 (353)
2 cd01410 SIRT7 SIRT7: Eukaryoti 100.0 4.2E-60 9.1E-65 453.5 18.6 206 45-252 1-206 (206)
3 PRK14138 NAD-dependent deacety 100.0 9E-60 1.9E-64 461.8 20.6 227 35-266 2-243 (244)
4 cd01409 SIRT4 SIRT4: Eukaryoti 100.0 2.7E-60 5.8E-65 469.5 16.4 217 37-257 1-260 (260)
5 PTZ00409 Sir2 (Silent Informat 100.0 1.3E-59 2.9E-64 466.8 18.6 230 29-264 13-262 (271)
6 COG0846 SIR2 NAD-dependent pro 100.0 1.1E-58 2.5E-63 454.2 16.5 227 34-265 2-246 (250)
7 PRK05333 NAD-dependent deacety 100.0 9.3E-58 2E-62 456.7 22.0 232 32-267 7-280 (285)
8 cd01408 SIRT1 SIRT1: Eukaryoti 100.0 2.7E-58 5.8E-63 449.1 17.5 212 45-260 1-235 (235)
9 PRK00481 NAD-dependent deacety 100.0 3.5E-57 7.5E-62 442.4 20.3 223 33-264 2-240 (242)
10 cd01413 SIR2_Af2 SIR2_Af2: Arc 100.0 1.2E-56 2.5E-61 434.0 16.2 206 41-252 1-222 (222)
11 PTZ00408 NAD-dependent deacety 100.0 1.2E-55 2.5E-60 432.3 17.3 211 42-264 2-235 (242)
12 PTZ00410 NAD-dependent SIR2; P 100.0 7.8E-55 1.7E-59 443.6 18.0 232 31-267 14-325 (349)
13 cd01411 SIR2H SIR2H: Uncharact 100.0 4.8E-55 1E-59 423.6 15.3 206 37-256 1-224 (225)
14 cd01412 SIRT5_Af1_CobB SIRT5_A 100.0 1.9E-54 4.1E-59 418.0 16.9 208 45-261 1-224 (224)
15 cd01407 SIR2-fam SIR2 family o 100.0 2.1E-54 4.5E-59 416.6 17.2 202 45-252 1-218 (218)
16 cd00296 SIR2 SIR2 superfamily 100.0 8.5E-49 1.8E-53 375.8 16.5 202 45-252 1-222 (222)
17 KOG2683 Sirtuin 4 and related 100.0 5.1E-49 1.1E-53 375.9 14.2 228 28-259 29-304 (305)
18 KOG2684 Sirtuin 5 and related 100.0 6.9E-47 1.5E-51 385.4 15.5 239 32-275 76-352 (412)
19 KOG2682 NAD-dependent histone 100.0 2.4E-46 5.1E-51 357.9 11.0 231 33-267 23-281 (314)
20 PF02146 SIR2: Sir2 family; I 100.0 3.7E-47 7.9E-52 355.0 5.0 159 52-216 1-178 (178)
21 cd01406 SIR2-like Sir2-like: P 98.6 4.3E-08 9.3E-13 95.8 5.2 79 45-123 1-112 (242)
22 PF03366 YEATS: YEATS family; 97.4 0.00086 1.9E-08 56.2 8.1 80 292-374 2-81 (84)
23 PF00205 TPP_enzyme_M: Thiamin 96.2 0.014 3E-07 52.0 6.6 66 194-260 70-137 (137)
24 PRK08322 acetolactate synthase 93.5 0.17 3.8E-06 55.2 7.1 69 194-265 255-325 (547)
25 PRK08979 acetolactate synthase 93.4 0.17 3.6E-06 55.9 6.7 71 193-265 264-336 (572)
26 PRK07979 acetolactate synthase 93.2 0.19 4.2E-06 55.3 6.8 70 194-265 265-336 (574)
27 PRK06882 acetolactate synthase 93.1 0.2 4.3E-06 55.2 6.9 70 194-265 265-336 (574)
28 PRK07524 hypothetical protein; 92.9 0.16 3.5E-06 55.4 5.7 74 193-266 255-330 (535)
29 TIGR01504 glyox_carbo_lig glyo 92.8 0.21 4.6E-06 55.3 6.6 69 194-264 262-332 (588)
30 PRK07418 acetolactate synthase 92.7 0.23 5E-06 55.3 6.8 70 194-265 283-354 (616)
31 CHL00099 ilvB acetohydroxyacid 92.6 0.31 6.8E-06 53.9 7.6 69 195-265 277-347 (585)
32 PRK09107 acetolactate synthase 92.6 0.26 5.6E-06 54.8 6.9 70 194-265 273-344 (595)
33 PRK08527 acetolactate synthase 92.6 0.26 5.6E-06 54.2 6.9 70 194-265 262-333 (563)
34 PRK06466 acetolactate synthase 92.3 0.29 6.3E-06 54.0 6.8 70 194-265 265-336 (574)
35 PRK07789 acetolactate synthase 92.3 0.27 5.8E-06 54.7 6.6 70 194-265 290-361 (612)
36 TIGR02418 acolac_catab acetola 92.2 0.35 7.6E-06 52.8 7.2 69 194-265 255-325 (539)
37 PRK05858 hypothetical protein; 92.1 0.43 9.4E-06 52.2 7.8 79 183-265 244-324 (542)
38 PRK06456 acetolactate synthase 92.1 0.31 6.7E-06 53.6 6.7 70 195-265 267-338 (572)
39 PLN02470 acetolactate synthase 92.0 0.36 7.8E-06 53.4 7.0 70 194-265 272-343 (585)
40 PRK06725 acetolactate synthase 91.9 0.34 7.3E-06 53.6 6.7 70 194-265 273-344 (570)
41 TIGR03254 oxalate_oxc oxalyl-C 91.9 0.43 9.3E-06 52.3 7.5 82 183-265 247-330 (554)
42 PRK11269 glyoxylate carboligas 91.8 0.37 8E-06 53.4 6.9 69 194-264 263-333 (591)
43 PRK08155 acetolactate synthase 91.6 0.43 9.3E-06 52.5 7.1 70 194-265 270-341 (564)
44 PRK06112 acetolactate synthase 91.6 0.4 8.6E-06 52.9 6.8 70 194-265 277-347 (578)
45 PRK08978 acetolactate synthase 91.6 0.36 7.8E-06 52.8 6.4 69 194-264 255-325 (548)
46 PF13289 SIR2_2: SIR2-like dom 91.5 0.24 5.3E-06 43.5 4.1 62 192-267 76-141 (143)
47 PRK06154 hypothetical protein; 91.5 0.43 9.2E-06 52.7 6.9 68 194-265 273-342 (565)
48 PRK07282 acetolactate synthase 91.4 0.41 8.8E-06 52.8 6.7 70 194-265 269-340 (566)
49 PRK08327 acetolactate synthase 91.4 0.43 9.2E-06 52.7 6.8 67 195-265 273-344 (569)
50 TIGR00118 acolac_lg acetolacta 91.2 0.42 9.1E-06 52.4 6.5 70 194-265 260-331 (558)
51 PRK08266 hypothetical protein; 91.0 0.35 7.5E-06 52.8 5.6 69 194-265 256-325 (542)
52 PRK08199 thiamine pyrophosphat 91.0 0.44 9.6E-06 52.3 6.5 72 194-265 263-337 (557)
53 PRK06048 acetolactate synthase 91.0 0.48 1.1E-05 52.1 6.8 70 194-265 266-337 (561)
54 PRK07525 sulfoacetaldehyde ace 91.0 0.41 8.8E-06 53.0 6.2 72 194-265 259-333 (588)
55 PRK09259 putative oxalyl-CoA d 90.9 0.63 1.4E-05 51.3 7.5 70 195-265 266-337 (569)
56 PRK06276 acetolactate synthase 90.9 0.54 1.2E-05 52.0 7.1 70 194-265 262-333 (586)
57 PRK06965 acetolactate synthase 90.8 0.49 1.1E-05 52.4 6.5 71 194-265 280-352 (587)
58 COG0028 IlvB Thiamine pyrophos 90.6 0.52 1.1E-05 52.2 6.5 70 193-265 258-329 (550)
59 PRK08611 pyruvate oxidase; Pro 90.5 0.56 1.2E-05 51.8 6.7 65 194-265 260-326 (576)
60 TIGR03457 sulphoacet_xsc sulfo 90.4 0.54 1.2E-05 51.9 6.4 70 194-265 255-329 (579)
61 PRK08273 thiamine pyrophosphat 90.3 0.59 1.3E-05 51.9 6.7 67 194-265 265-333 (597)
62 PRK08617 acetolactate synthase 90.0 0.65 1.4E-05 50.9 6.6 68 195-265 262-331 (552)
63 PRK06546 pyruvate dehydrogenas 89.5 0.72 1.6E-05 51.1 6.5 64 194-265 258-323 (578)
64 PRK07710 acetolactate synthase 89.5 0.77 1.7E-05 50.6 6.7 70 194-265 274-345 (571)
65 TIGR00173 menD 2-succinyl-5-en 89.0 0.69 1.5E-05 49.2 5.8 67 195-265 269-337 (432)
66 PRK07064 hypothetical protein; 88.7 0.84 1.8E-05 49.8 6.3 69 194-265 257-327 (544)
67 TIGR02720 pyruv_oxi_spxB pyruv 87.9 0.96 2.1E-05 50.0 6.2 68 194-265 257-326 (575)
68 PRK09124 pyruvate dehydrogenas 87.9 1 2.2E-05 49.6 6.4 65 194-265 258-324 (574)
69 KOG1185 Thiamine pyrophosphate 87.3 0.97 2.1E-05 49.1 5.4 82 184-266 259-343 (571)
70 PLN02573 pyruvate decarboxylas 84.2 1.5 3.3E-05 48.6 5.4 69 194-265 284-352 (578)
71 KOG3149 Transcription initiati 84.2 2.6 5.7E-05 42.2 6.5 79 289-370 34-112 (249)
72 PLN00022 electron transfer fla 83.7 2 4.4E-05 45.2 5.7 59 202-265 294-353 (356)
73 PRK07092 benzoylformate decarb 83.6 1.9 4.1E-05 47.1 5.7 72 193-265 264-336 (530)
74 PRK03363 fixB putative electro 82.9 2.4 5.2E-05 43.9 5.8 59 202-265 253-312 (313)
75 PRK11916 electron transfer fla 82.7 2.4 5.1E-05 43.9 5.7 59 202-265 252-311 (312)
76 PRK06457 pyruvate dehydrogenas 82.1 2.8 6E-05 46.0 6.3 59 194-259 252-312 (549)
77 TIGR03393 indolpyr_decarb indo 81.1 1.4 2.9E-05 48.4 3.5 69 194-265 265-335 (539)
78 cd02750 MopB_Nitrate-R-NarG-li 79.7 3.5 7.6E-05 44.3 6.0 55 196-250 165-221 (461)
79 smart00834 CxxC_CXXC_SSSS Puta 79.5 1 2.2E-05 31.8 1.2 34 138-177 4-37 (41)
80 cd02759 MopB_Acetylene-hydrata 79.0 3 6.5E-05 44.9 5.2 54 197-250 156-212 (477)
81 COG2025 FixB Electron transfer 78.3 4.5 9.8E-05 41.9 6.0 60 201-265 251-311 (313)
82 cd02766 MopB_3 The MopB_3 CD i 78.0 2.1 4.6E-05 46.5 3.7 55 196-250 152-208 (501)
83 COG3962 Acetolactate synthase 77.9 5.1 0.00011 43.7 6.3 71 194-265 288-358 (617)
84 PRK07449 2-succinyl-5-enolpyru 77.7 4.1 8.8E-05 44.8 5.8 62 195-259 280-343 (568)
85 cd02765 MopB_4 The MopB_4 CD i 75.2 3.6 7.8E-05 45.5 4.6 56 196-251 154-211 (567)
86 cd02753 MopB_Formate-Dh-H Form 74.5 4.9 0.00011 43.4 5.4 54 197-250 152-207 (512)
87 PF09723 Zn-ribbon_8: Zinc rib 73.5 1.5 3.3E-05 31.9 0.8 34 137-176 3-37 (42)
88 cd02768 MopB_NADH-Q-OR-NuoG2 M 72.1 7.3 0.00016 40.3 5.7 63 197-261 144-210 (386)
89 cd02767 MopB_ydeP The MopB_yde 71.4 6.9 0.00015 43.6 5.7 43 197-239 159-203 (574)
90 PRK09444 pntB pyridine nucleot 70.1 13 0.00029 40.3 7.2 87 177-263 354-461 (462)
91 cd02754 MopB_Nitrate-R-NapA-li 70.0 6 0.00013 43.4 4.8 54 197-250 153-210 (565)
92 cd02763 MopB_2 The MopB_2 CD i 69.1 7.9 0.00017 44.2 5.6 54 197-250 151-206 (679)
93 TIGR03479 DMSO_red_II_alp DMSO 69.0 4.1 9E-05 47.8 3.4 62 196-257 219-284 (912)
94 TIGR03394 indol_phenyl_DC indo 68.9 5 0.00011 44.1 3.9 68 194-264 261-330 (535)
95 TIGR01591 Fdh-alpha formate de 68.9 6 0.00013 44.3 4.6 54 197-250 151-206 (671)
96 COG3383 Uncharacterized anaero 68.5 4.7 0.0001 46.3 3.5 84 164-255 387-477 (978)
97 cd02755 MopB_Thiosulfate-R-lik 68.2 4.5 9.7E-05 43.3 3.3 54 198-251 153-209 (454)
98 PF02233 PNTB: NAD(P) transhyd 68.1 14 0.0003 40.3 6.9 87 178-264 356-463 (463)
99 cd02762 MopB_1 The MopB_1 CD i 67.3 11 0.00023 41.4 6.0 54 197-250 152-213 (539)
100 COG1029 FwdB Formylmethanofura 66.6 10 0.00022 40.1 5.3 74 177-254 306-385 (429)
101 TIGR01553 formate-DH-alph form 66.4 8.3 0.00018 45.9 5.2 54 197-250 217-272 (1009)
102 PRK12496 hypothetical protein; 66.2 2.8 6.1E-05 39.3 1.1 53 111-177 94-154 (164)
103 cd02752 MopB_Formate-Dh-Na-lik 65.2 6.4 0.00014 44.6 3.8 54 197-250 165-221 (649)
104 cd02760 MopB_Phenylacetyl-CoA- 65.0 11 0.00024 43.5 5.8 57 196-252 168-227 (760)
105 cd00368 Molybdopterin-Binding 64.2 6.1 0.00013 40.3 3.2 54 197-250 152-207 (374)
106 TIGR02098 MJ0042_CXXC MJ0042 f 64.1 3.7 8E-05 28.7 1.1 34 140-177 3-36 (38)
107 cd02770 MopB_DmsA-EC This CD ( 61.8 8.4 0.00018 43.0 4.0 54 197-250 162-221 (617)
108 cd02757 MopB_Arsenate-R This C 61.8 11 0.00024 41.3 4.9 67 198-264 159-232 (523)
109 PRK00398 rpoP DNA-directed RNA 61.8 3.6 7.8E-05 30.2 0.8 29 139-176 3-31 (46)
110 PF07295 DUF1451: Protein of u 61.4 5.1 0.00011 37.1 1.8 30 137-175 110-139 (146)
111 COG5033 TFG3 Transcription ini 61.3 21 0.00046 35.1 6.1 73 292-367 36-108 (225)
112 TIGR00373 conserved hypothetic 61.3 5.1 0.00011 37.3 1.8 32 138-177 108-139 (158)
113 PRK06266 transcription initiat 61.3 4.9 0.00011 38.2 1.8 32 139-178 117-148 (178)
114 TIGR02605 CxxC_CxxC_SSSS putat 61.1 4.3 9.3E-05 30.3 1.1 31 138-174 4-34 (52)
115 PRK15488 thiosulfate reductase 60.7 13 0.00028 42.5 5.4 54 198-251 193-250 (759)
116 PF09538 FYDLN_acid: Protein o 60.5 6 0.00013 34.8 2.0 30 140-179 10-39 (108)
117 TIGR01701 Fdhalpha-like oxidor 59.8 16 0.00034 42.1 5.7 44 197-240 194-239 (743)
118 cd02769 MopB_DMSOR-BSOR-TMAOR 59.6 13 0.00028 41.6 4.9 60 198-257 167-240 (609)
119 TIGR00509 bisC_fam molybdopter 59.1 12 0.00025 43.0 4.6 59 199-257 165-236 (770)
120 cd02751 MopB_DMSOR-like The Mo 58.3 22 0.00048 39.6 6.5 50 201-250 169-229 (609)
121 TIGR00595 priA primosomal prot 58.0 63 0.0014 35.6 9.8 22 192-213 301-322 (505)
122 PRK09939 putative oxidoreducta 57.6 11 0.00023 43.7 3.9 44 196-239 203-248 (759)
123 cd05014 SIS_Kpsf KpsF-like pro 57.0 13 0.00027 32.1 3.5 57 197-253 43-100 (128)
124 PRK11032 hypothetical protein; 56.6 6.2 0.00013 37.1 1.5 29 138-175 123-151 (160)
125 smart00531 TFIIE Transcription 56.2 6.3 0.00014 36.1 1.5 35 140-177 100-134 (147)
126 TIGR02300 FYDLN_acid conserved 54.9 8.6 0.00019 34.9 2.1 30 140-179 10-39 (129)
127 PRK06260 threonine synthase; V 54.8 7.1 0.00015 41.3 1.8 28 138-176 2-29 (397)
128 PF09845 DUF2072: Zn-ribbon co 53.8 8.1 0.00017 35.2 1.7 27 141-176 3-29 (131)
129 cd02761 MopB_FmdB-FwdB The Mop 53.6 25 0.00054 36.7 5.6 52 200-251 130-191 (415)
130 PRK13937 phosphoheptose isomer 53.2 15 0.00032 34.8 3.5 57 197-253 102-159 (188)
131 PF00384 Molybdopterin: Molybd 52.3 7.4 0.00016 40.5 1.5 67 197-263 107-179 (432)
132 PRK07860 NADH dehydrogenase su 52.2 14 0.00031 42.8 3.8 55 196-250 371-429 (797)
133 cd02758 MopB_Tetrathionate-Ra 51.4 14 0.0003 42.5 3.6 55 197-251 207-270 (735)
134 cd02773 MopB_Res-Cmplx1_Nad11 50.9 24 0.00053 36.6 5.0 51 197-247 141-194 (375)
135 PF00205 TPP_enzyme_M: Thiamin 50.3 10 0.00023 33.4 1.9 25 34-58 1-25 (137)
136 PF13248 zf-ribbon_3: zinc-rib 50.2 10 0.00022 24.7 1.3 24 140-176 3-26 (26)
137 TIGR03127 RuMP_HxlB 6-phospho 50.2 14 0.0003 34.2 2.8 54 199-252 70-124 (179)
138 cd05006 SIS_GmhA Phosphoheptos 50.2 32 0.00069 31.8 5.2 56 197-252 97-153 (177)
139 TIGR00354 polC DNA polymerase, 50.1 7.3 0.00016 45.7 1.1 39 132-181 1000-1043(1095)
140 PRK00945 acetyl-CoA decarbonyl 49.7 31 0.00067 32.8 5.1 60 200-263 107-167 (171)
141 PRK05580 primosome assembly pr 49.7 37 0.00079 38.8 6.5 23 191-213 468-490 (679)
142 COG1379 PHP family phosphoeste 49.6 9.6 0.00021 39.8 1.7 141 16-181 133-280 (403)
143 TIGR01973 NuoG NADH-quinone ox 49.5 17 0.00036 40.6 3.8 56 196-251 357-415 (603)
144 cd02772 MopB_NDH-1_NuoG2 MopB_ 48.3 24 0.00052 37.0 4.6 45 196-240 147-193 (414)
145 PRK04023 DNA polymerase II lar 48.0 8.6 0.00019 45.4 1.2 39 132-181 1025-1068(1121)
146 cd00350 rubredoxin_like Rubred 47.8 13 0.00029 25.5 1.7 25 140-175 2-26 (33)
147 cd05008 SIS_GlmS_GlmD_1 SIS (S 47.5 21 0.00045 30.6 3.3 56 198-253 43-99 (126)
148 PF13240 zinc_ribbon_2: zinc-r 47.5 12 0.00025 24.0 1.2 23 141-176 1-23 (23)
149 cd02764 MopB_PHLH The MopB_PHL 46.7 31 0.00067 37.7 5.2 54 198-251 193-256 (524)
150 PRK14714 DNA polymerase II lar 46.4 9.2 0.0002 46.1 1.2 39 132-181 1241-1284(1337)
151 cd05710 SIS_1 A subgroup of th 46.3 21 0.00046 31.0 3.2 57 198-254 44-101 (120)
152 PF05191 ADK_lid: Adenylate ki 46.3 7.6 0.00017 27.5 0.3 30 140-176 2-31 (36)
153 COG3364 Zn-ribbon containing p 46.2 11 0.00024 33.0 1.3 27 140-175 3-29 (112)
154 COG1282 PntB NAD/NADP transhyd 46.0 29 0.00063 37.0 4.6 87 177-264 356-463 (463)
155 COG3091 SprT Zn-dependent meta 45.8 3.8 8.3E-05 38.2 -1.6 79 94-177 69-151 (156)
156 KOG3954 Electron transfer flav 45.6 24 0.00052 36.0 3.7 58 203-265 276-334 (336)
157 PRK14990 anaerobic dimethyl su 44.2 30 0.00066 39.9 4.9 56 196-251 226-288 (814)
158 PLN02980 2-oxoglutarate decarb 43.4 43 0.00093 42.2 6.3 64 197-262 594-659 (1655)
159 PF13717 zinc_ribbon_4: zinc-r 43.0 15 0.00032 25.9 1.3 32 140-175 3-34 (36)
160 TIGR02166 dmsA_ynfE anaerobic 42.9 27 0.00058 40.2 4.2 54 197-250 210-270 (797)
161 COG1737 RpiR Transcriptional r 42.1 34 0.00075 34.4 4.4 59 194-252 170-229 (281)
162 PF13719 zinc_ribbon_5: zinc-r 40.7 15 0.00033 25.9 1.2 32 140-175 3-34 (37)
163 PRK07591 threonine synthase; V 40.6 15 0.00033 39.2 1.7 28 138-177 17-44 (421)
164 COG2331 Uncharacterized protei 40.4 16 0.00034 30.4 1.3 41 138-184 11-56 (82)
165 PRK08493 NADH dehydrogenase su 40.2 43 0.00093 39.2 5.3 69 196-264 365-442 (819)
166 COG1198 PriA Primosomal protei 40.0 54 0.0012 37.9 5.9 10 164-175 475-484 (730)
167 cd02068 radical_SAM_B12_BD B12 39.7 84 0.0018 27.3 6.0 66 200-265 38-111 (127)
168 COG1439 Predicted nucleic acid 39.4 12 0.00026 35.7 0.6 27 138-177 138-164 (177)
169 TIGR01580 narG respiratory nit 39.4 34 0.00074 41.6 4.4 61 199-259 243-307 (1235)
170 PRK13532 nitrate reductase cat 39.0 35 0.00075 39.7 4.3 53 197-250 202-259 (830)
171 PRK13938 phosphoheptose isomer 38.4 47 0.001 32.0 4.5 59 195-253 107-166 (196)
172 PRK07586 hypothetical protein; 38.0 93 0.002 33.8 7.2 71 182-264 243-315 (514)
173 PRK12474 hypothetical protein; 37.0 95 0.0021 33.9 7.1 70 183-264 248-319 (518)
174 COG3961 Pyruvate decarboxylase 36.5 54 0.0012 36.4 5.0 42 16-57 181-222 (557)
175 cd00729 rubredoxin_SM Rubredox 36.3 23 0.00049 24.7 1.4 26 139-175 2-27 (34)
176 TIGR03844 cysteate_syn cysteat 36.2 19 0.00041 38.4 1.5 27 139-177 2-28 (398)
177 COG0243 BisC Anaerobic dehydro 36.0 28 0.00061 39.9 2.9 51 199-249 197-252 (765)
178 PRK09129 NADH dehydrogenase su 35.8 53 0.0012 37.8 5.2 46 196-241 365-412 (776)
179 PRK11302 DNA-binding transcrip 35.3 51 0.0011 32.6 4.3 55 197-251 171-225 (284)
180 TIGR00441 gmhA phosphoheptose 35.2 72 0.0016 29.0 5.0 54 198-251 76-130 (154)
181 PRK14715 DNA polymerase II lar 35.0 18 0.00039 44.0 1.2 56 132-202 1530-1590(1627)
182 cd05013 SIS_RpiR RpiR-like pro 34.6 51 0.0011 28.0 3.7 58 197-254 56-114 (139)
183 PRK06450 threonine synthase; V 34.4 22 0.00048 36.9 1.7 26 140-177 4-29 (338)
184 COG1996 RPC10 DNA-directed RNA 33.9 19 0.00041 27.5 0.8 27 140-175 7-33 (49)
185 PF01155 HypA: Hydrogenase exp 33.4 15 0.00033 32.2 0.2 35 130-175 61-95 (113)
186 PRK00945 acetyl-CoA decarbonyl 33.3 43 0.00094 31.8 3.3 25 33-57 23-47 (171)
187 PRK12380 hydrogenase nickel in 33.2 25 0.00053 31.0 1.5 33 132-175 63-95 (113)
188 PF04574 DUF592: Protein of un 33.1 40 0.00087 31.5 2.9 19 33-51 135-153 (153)
189 PRK00564 hypA hydrogenase nick 32.5 22 0.00048 31.5 1.1 36 130-175 62-97 (117)
190 cd05005 SIS_PHI Hexulose-6-pho 32.5 41 0.0009 31.1 3.0 56 199-254 73-129 (179)
191 PF02591 DUF164: Putative zinc 32.1 39 0.00084 25.7 2.3 41 129-176 16-56 (56)
192 TIGR00315 cdhB CO dehydrogenas 32.0 82 0.0018 29.7 4.8 24 33-56 16-39 (162)
193 PRK00414 gmhA phosphoheptose i 31.9 71 0.0015 30.4 4.5 57 197-253 107-164 (192)
194 TIGR03129 one_C_dehyd_B formyl 31.3 63 0.0014 33.6 4.4 51 200-250 136-196 (421)
195 PRK14717 putative glycine/sarc 31.2 67 0.0015 28.1 3.7 36 31-67 6-50 (107)
196 COG0761 lytB 4-Hydroxy-3-methy 31.1 52 0.0011 33.9 3.6 71 193-264 204-281 (294)
197 PF13580 SIS_2: SIS domain; PD 30.9 57 0.0012 29.1 3.5 36 199-234 101-136 (138)
198 COG3357 Predicted transcriptio 30.6 23 0.0005 30.4 0.8 28 139-175 58-85 (97)
199 TIGR00100 hypA hydrogenase nic 30.0 31 0.00066 30.4 1.6 27 138-175 69-95 (115)
200 COG0028 IlvB Thiamine pyrophos 29.7 46 0.001 37.1 3.3 28 32-59 188-215 (550)
201 COG3142 CutC Uncharacterized p 29.7 49 0.0011 33.1 3.1 41 31-72 155-196 (241)
202 PF04016 DUF364: Domain of unk 29.5 50 0.0011 30.2 2.9 71 192-263 53-131 (147)
203 TIGR01706 NAPA periplasmic nit 29.4 53 0.0012 38.2 3.8 53 197-250 202-259 (830)
204 PF00301 Rubredoxin: Rubredoxi 29.4 30 0.00065 26.0 1.2 14 139-152 1-14 (47)
205 smart00659 RPOLCX RNA polymera 29.3 33 0.00071 25.4 1.4 27 140-176 3-29 (44)
206 PRK15482 transcriptional regul 28.2 67 0.0015 32.0 3.9 59 196-254 177-236 (285)
207 COG3961 Pyruvate decarboxylase 28.2 82 0.0018 35.1 4.7 78 182-264 249-335 (557)
208 cd05013 SIS_RpiR RpiR-like pro 27.8 46 0.001 28.3 2.3 27 33-60 2-28 (139)
209 TIGR00853 pts-lac PTS system, 26.9 30 0.00065 29.4 1.0 16 43-58 2-17 (95)
210 PRK02947 hypothetical protein; 26.9 76 0.0016 31.4 3.9 41 198-238 103-143 (246)
211 TIGR02026 BchE magnesium-proto 26.9 1.3E+02 0.0028 32.9 6.0 65 201-265 63-136 (497)
212 TIGR00315 cdhB CO dehydrogenas 26.6 58 0.0012 30.7 2.8 57 200-262 99-158 (162)
213 cd00730 rubredoxin Rubredoxin; 26.6 46 0.001 25.3 1.8 13 140-152 2-14 (50)
214 PRK03824 hypA hydrogenase nick 26.6 39 0.00084 30.7 1.6 15 138-152 69-83 (135)
215 PRK11557 putative DNA-binding 26.4 98 0.0021 30.6 4.7 60 192-251 166-226 (278)
216 cd02774 MopB_Res-Cmplx1_Nad11- 25.2 78 0.0017 33.4 3.9 45 194-238 141-188 (366)
217 PRK13936 phosphoheptose isomer 25.2 78 0.0017 30.2 3.5 59 197-255 107-169 (197)
218 PRK07524 hypothetical protein; 25.1 65 0.0014 35.2 3.4 26 31-56 188-213 (535)
219 PRK09590 celB cellobiose phosp 25.1 32 0.0007 29.9 0.8 14 45-58 2-15 (104)
220 PF03029 ATP_bind_1: Conserved 24.6 30 0.00066 34.1 0.6 52 207-258 1-58 (238)
221 PRK03681 hypA hydrogenase nick 24.6 42 0.0009 29.6 1.4 28 138-175 69-96 (114)
222 PF01475 FUR: Ferric uptake re 24.4 81 0.0017 27.2 3.2 49 92-151 42-92 (120)
223 PRK08166 NADH dehydrogenase su 24.4 43 0.00094 39.0 1.9 41 197-237 367-409 (847)
224 COG1867 TRM1 N2,N2-dimethylgua 24.3 71 0.0015 34.1 3.3 58 140-211 241-299 (380)
225 PRK11337 DNA-binding transcrip 24.2 1.1E+02 0.0024 30.5 4.5 57 195-251 181-238 (292)
226 PF01380 SIS: SIS domain SIS d 24.1 36 0.00079 29.0 1.0 57 196-252 48-105 (131)
227 KOG4166 Thiamine pyrophosphate 23.9 86 0.0019 34.3 3.8 36 27-62 281-316 (675)
228 PRK04940 hypothetical protein; 23.9 55 0.0012 31.4 2.2 62 177-241 26-95 (180)
229 PRK08273 thiamine pyrophosphat 23.7 74 0.0016 35.4 3.5 26 31-56 195-220 (597)
230 COG1579 Zn-ribbon protein, pos 23.7 41 0.00088 33.7 1.3 41 129-176 191-231 (239)
231 TIGR03393 indolpyr_decarb indo 23.6 79 0.0017 34.7 3.7 28 30-57 191-218 (539)
232 TIGR03471 HpnJ hopanoid biosyn 23.4 1.9E+02 0.0041 31.2 6.5 69 194-262 61-138 (472)
233 PF10571 UPF0547: Uncharacteri 23.4 58 0.0012 21.5 1.6 9 141-149 2-10 (26)
234 TIGR00375 conserved hypothetic 23.1 45 0.00097 35.5 1.6 39 134-181 235-273 (374)
235 PF12172 DUF35_N: Rubredoxin-l 22.8 32 0.00068 24.0 0.3 27 135-174 7-33 (37)
236 PF14353 CpXC: CpXC protein 22.7 41 0.00089 29.7 1.0 16 134-149 33-48 (128)
237 COG1675 TFA1 Transcription ini 22.6 55 0.0012 31.3 1.9 30 140-177 114-143 (176)
238 PF10083 DUF2321: Uncharacteri 22.3 35 0.00077 32.0 0.5 17 166-184 41-62 (158)
239 PRK00762 hypA hydrogenase nick 22.3 43 0.00094 29.9 1.1 32 138-175 69-101 (124)
240 cd04795 SIS SIS domain. SIS (S 22.1 1.2E+02 0.0026 23.8 3.6 40 196-235 42-81 (87)
241 TIGR02663 nifX nitrogen fixati 22.1 2.5E+02 0.0053 24.5 5.8 64 192-274 54-117 (119)
242 TIGR03457 sulphoacet_xsc sulfo 22.0 85 0.0018 34.8 3.5 28 31-58 183-210 (579)
243 TIGR01504 glyox_carbo_lig glyo 21.9 88 0.0019 34.9 3.6 28 31-58 189-216 (588)
244 PRK10886 DnaA initiator-associ 21.8 1.6E+02 0.0035 28.3 5.0 58 196-253 104-165 (196)
245 CHL00099 ilvB acetohydroxyacid 21.8 84 0.0018 34.9 3.5 27 31-57 204-230 (585)
246 PRK06965 acetolactate synthase 21.8 84 0.0018 35.0 3.4 27 31-57 208-234 (587)
247 PF13692 Glyco_trans_1_4: Glyc 21.7 1.3E+02 0.0028 25.4 4.0 80 177-264 52-133 (135)
248 PRK09130 NADH dehydrogenase su 21.6 1.3E+02 0.0028 34.5 4.9 45 196-240 359-406 (687)
249 PRK09259 putative oxalyl-CoA d 21.4 85 0.0018 34.7 3.4 27 31-57 200-226 (569)
250 PRK07979 acetolactate synthase 21.3 89 0.0019 34.6 3.5 28 31-58 193-220 (574)
251 PRK13936 phosphoheptose isomer 21.3 1.6E+02 0.0035 28.0 4.8 30 28-58 27-56 (197)
252 TIGR00274 N-acetylmuramic acid 21.2 1E+02 0.0022 31.6 3.6 53 199-251 124-177 (291)
253 PF02302 PTS_IIB: PTS system, 20.9 46 0.001 26.9 0.9 12 47-58 2-13 (90)
254 COG1440 CelA Phosphotransferas 20.8 53 0.0012 28.8 1.3 14 45-58 2-15 (102)
255 TIGR02720 pyruv_oxi_spxB pyruv 20.7 88 0.0019 34.7 3.3 26 31-56 187-212 (575)
256 PF10122 Mu-like_Com: Mu-like 20.6 31 0.00067 26.6 -0.2 32 137-175 2-33 (51)
257 COG4821 Uncharacterized protei 20.6 1.4E+02 0.0031 29.5 4.3 39 197-235 100-138 (243)
258 PRK07789 acetolactate synthase 20.5 97 0.0021 34.7 3.6 27 31-57 218-244 (612)
259 PRK11382 frlB fructoselysine-6 20.1 1.1E+02 0.0023 31.8 3.6 54 199-252 90-144 (340)
260 TIGR03394 indol_phenyl_DC indo 20.0 1E+02 0.0022 33.9 3.7 29 29-57 186-214 (535)
No 1
>KOG1905 consensus Class IV sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=3.1e-74 Score=563.42 Aligned_cols=330 Identities=54% Similarity=0.849 Sum_probs=302.6
Q ss_pred CCccccccCCCccCCCCCCCCCcCCChHHHHHHHHHHHHHHHhCCcEEEEecCCccccCCCCCccCCCcccccccCCCCC
Q 012378 1 MSLGYAEKLSYIEDVGNVGMAEFFDSPQILQEKIEQLAKLIQKSKHLVVFTGAGISTSCGIPDFRGPNGIWTLQREGKPL 80 (465)
Q Consensus 1 ms~~ya~~l~~~~~~g~~g~~e~~d~~~~l~~ki~~la~lIk~Ak~IVVlTGAGIStaSGIPDFRg~~GlW~~~~~~~~~ 80 (465)
||++||+++|.+.++|++|++|.||+++++..++++||++|++||++||+|||||||+|||||||||+|+|++++.|+.
T Consensus 12 ~~v~~~~~~s~~~~~~k~~~~e~~D~~e~l~~kv~elA~li~~sk~lvv~tGAGISTaa~IPDfRGp~GVWTL~~kG~~- 90 (353)
T KOG1905|consen 12 MSVNYAHGLSIRLEKGKQGRPEEFDPPEVLRTKVEELAQLIQQSKHLVVYTGAGISTAAGIPDFRGPQGVWTLQQKGKD- 90 (353)
T ss_pred hhhhhhcccchhhhcccccCccccCCHHHHHHHHHHHHHHHhhCCcEEEEeCCccccccCCCCccCCCceeehhhcCcc-
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred cccccccccCCCCHHHHHHHHHHHcCCceEEEeecccchhhhcCCCCCceEEcCCCCccccCCCCCCcccchhhhhhhcc
Q 012378 81 PEASLPFHRAMPGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFRDFEVETIGL 160 (465)
Q Consensus 81 p~~~~~f~~a~Pn~~H~aLa~Le~~G~l~~VITQNIDgLH~rAG~p~~kViELHGnl~~~~C~~C~~~y~rd~~~~~i~~ 160 (465)
.....|..|.|+.+||+|.+|++.|.+++||||||||||.|+|+|+++++|||||++.++|.+|..+|.++..++++++
T Consensus 91 -~~~~df~~ArPt~THmai~~Lhr~gll~~viSQNvDGLhlrsGlPr~~LsElHGNmfiEvC~sC~~~yvr~~~v~t~gl 169 (353)
T KOG1905|consen 91 -KFGVDFSEARPTVTHMAIVALHRAGLLKHVISQNVDGLHLRSGLPREKLSELHGNMFIEVCKSCRPEYVRDRVVDTVGL 169 (353)
T ss_pred -ccCCchhhcCCcchHHHHHHHHHcchhhhhhhccccchhhccCCCHHHHHHHhcchHHHHhhhhcccceehhheeeccc
Confidence 5566799999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccCCCCCCCCC------CCCcccCcEEeCCCCCChhhhhHHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEE
Q 012378 161 KETSRRCSDLK------CGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIV 234 (465)
Q Consensus 161 ~~~~P~C~~p~------CGg~LrP~VV~FGE~lp~~~~~~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViI 234 (465)
..+.+.|.... |-|.|++.++.|+..+|...|+.|.+++++||++|++||||+|.|..++|+.+.+.|+++++|
T Consensus 170 ~at~R~ct~~k~~~~rscrg~l~d~~ldwe~~lpln~l~~a~~a~~~Ad~~lcLGTSLqI~p~g~lpl~~~k~g~K~~iv 249 (353)
T KOG1905|consen 170 KATGRHCTGRKCRKCRSCRGTLRDFGLDWEDELPLNDLDRATKAAKRADLILCLGTSLQILPKGNLPLKMKKRGGKIVIV 249 (353)
T ss_pred ccccccccccccccccccccchhhccccccccCCchhhHHHHHHhhhcceEEEeccceEeeeCCCcchhHhccCceEEEE
Confidence 87766665333 446789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcccEEEECcHHHHHHHHHHHhccCCCCcccc-CceeEEEeeeccCCccceeeEEEEeeecCCCCCcccceE
Q 012378 235 NLQKTPKDKKASLVIHGFVDKVVAGVMDLLNLRIPPYIRI-DLLQIIVTQSLSSDKKFVNWTLRITSVHGQTAQLPFIKS 313 (465)
Q Consensus 235 Nl~~t~~d~~adl~I~g~~devL~~L~~~L~l~iP~~~~~-~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 313 (465)
|+|+|+.|..+++.|||++|+||..||+.||++||+|.+. |.+.+.++....+....+.|.+..+++.+-..+.+|++.
T Consensus 250 NlQ~T~hDk~A~l~Ihg~vd~Vm~~lm~~LgveIp~y~~~~d~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (353)
T KOG1905|consen 250 NLQWTPHDKIANLKIHGKVDLVMASLMELLGVEIPAYDRLPDPIFILLTLSRPGEEHTIPQPLLKNSVEETTKQEPFIST 329 (353)
T ss_pred eCccCcccchhheeehhhHHHHHHHHHHHhCCCCCcccCCCcccccccccCCCCccccccccccccccccCCCCCccccc
Confidence 9999999999999999999999999999999999999985 666666666666678889999999999998888999998
Q ss_pred eEeecccccccccccccCCCeEEEEeccc
Q 012378 314 VEVSFSDRQKYKEASLDKQPFQLKRRTVI 342 (465)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 342 (465)
++ + .++++++|.-.++...
T Consensus 330 ~~-s---------pi~~~~~~~~~~k~~r 348 (353)
T KOG1905|consen 330 IS-S---------PILKGPRIRTPIKNGR 348 (353)
T ss_pred cc-c---------ccccCCCCcCCccCcc
Confidence 88 1 4566666665544443
No 2
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=100.00 E-value=4.2e-60 Score=453.52 Aligned_cols=206 Identities=68% Similarity=1.061 Sum_probs=189.3
Q ss_pred CcEEEEecCCccccCCCCCccCCCcccccccCCCCCcccccccccCCCCHHHHHHHHHHHcCCceEEEeecccchhhhcC
Q 012378 45 KHLVVFTGAGISTSCGIPDFRGPNGIWTLQREGKPLPEASLPFHRAMPGMTHMALVELEKAGILKFVISQNVDGLHLRSG 124 (465)
Q Consensus 45 k~IVVlTGAGIStaSGIPDFRg~~GlW~~~~~~~~~p~~~~~f~~a~Pn~~H~aLa~Le~~G~l~~VITQNIDgLH~rAG 124 (465)
|+|||+|||||||+||||||||++|+|+........|...|.|+.++||.+|++|++|++.|++++||||||||||++||
T Consensus 1 k~ivvltGAGiS~~SGIP~fR~~~Glw~~~~~~~~~~~~~~~~~~~~Pn~~H~~La~l~~~g~~~~viTQNID~Lh~~AG 80 (206)
T cd01410 1 KHLVVFTGAGISTSAGIPDFRGPNGVWTLLPEDKGRRRFSWRFRRAEPTLTHMALVELERAGLLKFVISQNVDGLHLRSG 80 (206)
T ss_pred CcEEEEeCCcccHhhCCCcccCcCCCcccCCccccChHHHhhhhcCCCCHHHHHHHHHHHCCCCceEEecCccchHhHcC
Confidence 68999999999999999999999999987654344566678889999999999999999999999999999999999999
Q ss_pred CCCCceEEcCCCCccccCCCCCCcccchhhhhhhccccCCCCCCCCCCCCcccCcEEeCCCCCChhhhhHHHHHhccCCE
Q 012378 125 IPREKLAELHGNSFMEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADV 204 (465)
Q Consensus 125 ~p~~kViELHGnl~~~~C~~C~~~y~rd~~~~~i~~~~~~P~C~~p~CGg~LrP~VV~FGE~lp~~~~~~A~~~~~~aDL 204 (465)
++.++|+|+|||++..+|+.|+..|..+.....+.....+|+| |.||+.|||+||||||.+|...++.|.+++++||+
T Consensus 81 ~~~~~vielHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~p~C--~~Cgg~lrP~VV~FgE~lp~~~~~~a~~~~~~aDl 158 (206)
T cd01410 81 LPREKLSELHGNMFIEVCKSCGPEYVRDDVVETRGDKETGRRC--HACGGILKDTIVDFGERLPPENWMGAAAAACRADL 158 (206)
T ss_pred cCcccEEEecCCcCcccCCCCCCccchHHHHHHhhcCCCCCcC--CCCcCccCCcEEECCCCCCHHHHHHHHHHHhcCCE
Confidence 9889999999999999999999988776655554445568999 79999999999999999999999999999999999
Q ss_pred EEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCCCcccEEEECc
Q 012378 205 VLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGF 252 (465)
Q Consensus 205 lLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~~adl~I~g~ 252 (465)
+|||||||+|+|+++|+..+.++|+++|+||+++++.|..++++|+|+
T Consensus 159 llviGTSl~V~pa~~l~~~~~~~g~~vi~iN~~~~~~d~~~d~~~~~~ 206 (206)
T cd01410 159 FLCLGTSLQVTPAANLPLKAARAGGRLVIVNLQPTPKDKLADLVIHGD 206 (206)
T ss_pred EEEECcCceehhHHHHHHHHHhcCCeEEEECCCCCCCCccccEEEeCC
Confidence 999999999999999999899999999999999999999999999885
No 3
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=100.00 E-value=9e-60 Score=461.82 Aligned_cols=227 Identities=37% Similarity=0.606 Sum_probs=203.2
Q ss_pred HHHHHHHHhCCcEEEEecCCccccCCCCCccCCCcccccccCCC-------CCcccccc--------cccCCCCHHHHHH
Q 012378 35 EQLAKLIQKSKHLVVFTGAGISTSCGIPDFRGPNGIWTLQREGK-------PLPEASLP--------FHRAMPGMTHMAL 99 (465)
Q Consensus 35 ~~la~lIk~Ak~IVVlTGAGIStaSGIPDFRg~~GlW~~~~~~~-------~~p~~~~~--------f~~a~Pn~~H~aL 99 (465)
++++++|++|++|||+||||||++||||||||++|+|+.+.... ..|+..|. +.+++||.+|++|
T Consensus 2 ~~l~~~l~~a~~ivv~tGAGiS~~SGIp~fR~~~gl~~~~~~~~~~~~~~~~~p~~~w~~~~~~~~~~~~~~Pn~~H~al 81 (244)
T PRK14138 2 KEFLELLNESRLTVTLTGAGISTPSGIPDFRGPQGIYKKYPQNVFDIDFFYSHPEEFYRFAKEGIFPMLEAKPNLAHVLL 81 (244)
T ss_pred HHHHHHHHhCCCEEEEECcccchhhCCCCcCCCCCCccCCcccccCHHHHHhCHHHHHHHHHHhhcccccCCCCHHHHHH
Confidence 57899999999999999999999999999999999998643221 23444443 2478999999999
Q ss_pred HHHHHcCCceEEEeecccchhhhcCCCCCceEEcCCCCccccCCCCCCcccchhhhhhhccccCCCCCCCCCCCCcccCc
Q 012378 100 VELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLRDT 179 (465)
Q Consensus 100 a~Le~~G~l~~VITQNIDgLH~rAG~p~~kViELHGnl~~~~C~~C~~~y~rd~~~~~i~~~~~~P~C~~p~CGg~LrP~ 179 (465)
++|+++|++.+||||||||||++||. ++|+|+|||++..+|..|++.|..+.....+ ....+|+| |.||+.|||+
T Consensus 82 a~L~~~g~~~~viTQNIDgLh~~aG~--~~VielHG~~~~~~C~~C~~~~~~~~~~~~~-~~~~~p~C--p~Cgg~lrP~ 156 (244)
T PRK14138 82 AKLEEKGLIEAVITQNIDRLHQKAGS--KKVIELHGNVEEYYCVRCGKRYTVEDVIEKL-EKSDVPRC--DDCSGLIRPN 156 (244)
T ss_pred HHHHHcCCceEEEeecccChhhHcCC--CeEEEccCCcCeeEECCCCCcccHHHHHHHH-hcCCCCCC--CCCCCeECCC
Confidence 99999999999999999999999996 6899999999999999999998776544322 23347999 7999999999
Q ss_pred EEeCCCCCChhhhhHHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCCCcccEEEECcHHHHHHH
Q 012378 180 VLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVVAG 259 (465)
Q Consensus 180 VV~FGE~lp~~~~~~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~~adl~I~g~~devL~~ 259 (465)
||||||.+|+..++.+.+++++||++|||||||+|+|++.||..++++|+++|+||+++|+.|..++++|+++++++|++
T Consensus 157 Vv~FgE~~p~~~~~~~~~~~~~aDl~lviGTSl~V~pa~~l~~~~~~~g~~~i~iN~~~t~~d~~~~~~i~~~~~~~l~~ 236 (244)
T PRK14138 157 IVFFGEALPQDALREAIRLSSKASLMIVMGSSLVVYPAAELPLITVRSGGKLVIVNLGETPLDDIATLKYNMDVVEFANR 236 (244)
T ss_pred EEECCCcCCHHHHHHHHHHHhcCCEEEEeCcCCeeecHhHHHHHHHHcCCeEEEEcCCCCCCCcceeEEEeCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcc
Q 012378 260 VMDLLNL 266 (465)
Q Consensus 260 L~~~L~l 266 (465)
|++.||+
T Consensus 237 l~~~~~~ 243 (244)
T PRK14138 237 VMSEGGI 243 (244)
T ss_pred HHHHhCC
Confidence 9998875
No 4
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=100.00 E-value=2.7e-60 Score=469.48 Aligned_cols=217 Identities=34% Similarity=0.523 Sum_probs=189.6
Q ss_pred HHHHHHhCCcEEEEecCCccccCCCCCccCCCccccc-ccCC-----CCCccccc-----------ccccCCCCHHHHHH
Q 012378 37 LAKLIQKSKHLVVFTGAGISTSCGIPDFRGPNGIWTL-QREG-----KPLPEASL-----------PFHRAMPGMTHMAL 99 (465)
Q Consensus 37 la~lIk~Ak~IVVlTGAGIStaSGIPDFRg~~GlW~~-~~~~-----~~~p~~~~-----------~f~~a~Pn~~H~aL 99 (465)
|+++|++|++|||+|||||||+||||||||++|+|+. +... ...|+..| .+..++||.+|++|
T Consensus 1 ~~~~l~~sk~ivvlTGAGiSt~SGIPdFR~~~Glw~~~~~~~~~~~f~~~p~~~~~~~~~~~~~~~~~~~~~Pn~~H~~l 80 (260)
T cd01409 1 LQDFVARSRRLLVLTGAGISTESGIPDYRSEGGLYSRTFRPMTHQEFMRSPAARQRYWARSFVGWPRFSAAQPNAAHRAL 80 (260)
T ss_pred ChHHHhcCCCEEEEeCceeehhhCCCCCCCcCCcccCCCCCCCHHHHHhCcHHHHHHHHHHHhhhhhhccCCCCHHHHHH
Confidence 4788999999999999999999999999999999987 3321 12243222 13468999999999
Q ss_pred HHHHHcCCceEEEeecccchhhhcCCCCCceEEcCCCCccccCCCCCCcccchhhhhhhc--------------------
Q 012378 100 VELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFRDFEVETIG-------------------- 159 (465)
Q Consensus 100 a~Le~~G~l~~VITQNIDgLH~rAG~p~~kViELHGnl~~~~C~~C~~~y~rd~~~~~i~-------------------- 159 (465)
++|+++|++.+||||||||||++||+ ++|+|||||++..+|+.|++.|.++.....+.
T Consensus 81 a~L~~~g~~~~viTQNIDgLh~~aG~--~~vielHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (260)
T cd01409 81 AALEAAGRLHGLITQNVDGLHTKAGS--RNVVELHGSLHRVVCLSCGFRTPRAELQDRLEALNPGFAEQAAGQAPDGDVD 158 (260)
T ss_pred HHHHHcCCCeeEEeeccchhHHHcCC--CCEEEEeeecCEEEeCCCcCccCHHHHHHHHhhcCcchhhhhcccCCCcccc
Confidence 99999999999999999999999998 68999999999999999999887543322110
Q ss_pred ------cccCCCCCCCCCCCCcccCcEEeCCCCCChhhhhHHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEE
Q 012378 160 ------LKETSRRCSDLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVI 233 (465)
Q Consensus 160 ------~~~~~P~C~~p~CGg~LrP~VV~FGE~lp~~~~~~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lVi 233 (465)
....+|+| |.|||.|||+||||||++|++.+..|.+++++|||+|||||||+|+|++.||..+.++|+++|+
T Consensus 159 ~~~~~~~~~~~p~C--~~Cgg~lrP~VV~FGE~lp~~~~~~a~~~~~~aDlllviGTSl~V~pa~~l~~~a~~~g~~vii 236 (260)
T cd01409 159 LEDEQVAGFRVPEC--ERCGGVLKPDVVFFGENVPRDRVVTAAARLAEADALLVLGSSLMVYSGYRFVLAAAEAGLPIAI 236 (260)
T ss_pred cchhhcccCCCCCC--CCCCCEECCCEEECCCCCCHHHHHHHHHHHhcCCEEEEeCcCceecchhhHHHHHHHCCCcEEE
Confidence 01236899 7899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCCCCCCcccEEEECcHHHHH
Q 012378 234 VNLQKTPKDKKASLVIHGFVDKVV 257 (465)
Q Consensus 234 INl~~t~~d~~adl~I~g~~devL 257 (465)
||+++|+.|..++++|+|+++++|
T Consensus 237 IN~~~t~~d~~a~~~i~~~~~~~l 260 (260)
T cd01409 237 VNIGPTRADHLATLKVDARCGEVL 260 (260)
T ss_pred EcCCCCCCCccccEEEeCChhhhC
Confidence 999999999999999999999875
No 5
>PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional
Probab=100.00 E-value=1.3e-59 Score=466.79 Aligned_cols=230 Identities=32% Similarity=0.500 Sum_probs=198.1
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEecCCccccCCCCCccCC-CcccccccCC--------CCCccccccc-------ccCCC
Q 012378 29 ILQEKIEQLAKLIQKSKHLVVFTGAGISTSCGIPDFRGP-NGIWTLQREG--------KPLPEASLPF-------HRAMP 92 (465)
Q Consensus 29 ~l~~ki~~la~lIk~Ak~IVVlTGAGIStaSGIPDFRg~-~GlW~~~~~~--------~~~p~~~~~f-------~~a~P 92 (465)
..+..++.++++|++|++|||+|||||||+||||||||+ +|+|+.++.. ...|+..|.| ..++|
T Consensus 13 ~~~~~l~~l~~~l~~s~~ivvlTGAGiSteSGIPdFR~~~~Glw~~~~~~~~~t~~~f~~~p~~~~~~~~~~~~~~~a~P 92 (271)
T PTZ00409 13 TKSITLEDLADMIRKCKYVVALTGSGTSAESNIPSFRGPSSSIWSKYDPKIYGTIWGFWKYPEKIWEVIRDISSDYEIEL 92 (271)
T ss_pred cccccHHHHHHHHHhCCcEEEEECCeechhhCCCcccCCCCccccCCCHHHhccHHHHHHChHHHHHHHHHhhhcccCCC
Confidence 344578899999999999999999999999999999998 6999875421 1234444543 25899
Q ss_pred CHHHHHHHHHHHcCCceEEEeecccchhhhcCCCCCceEEcCCCCccccCCCCCCcccchhhhhhh-c--cccCCCCCCC
Q 012378 93 GMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFRDFEVETI-G--LKETSRRCSD 169 (465)
Q Consensus 93 n~~H~aLa~Le~~G~l~~VITQNIDgLH~rAG~p~~kViELHGnl~~~~C~~C~~~y~rd~~~~~i-~--~~~~~P~C~~ 169 (465)
|.+|++|++|++.|++.+||||||||||+|||. ++|+|||||++..+|..|++.+..+...... . ....+|+|
T Consensus 93 N~~H~aLa~Le~~g~~~~vITQNIDgLh~rAGs--~~V~ElHG~l~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~P~C-- 168 (271)
T PTZ00409 93 NPGHVALSTLESLGYLKFVVTQNVDGLHEESGN--TKVIPLHGSVFEARCCTCRKTIQLNKIMLQKTSHFMHQLPPEC-- 168 (271)
T ss_pred CHHHHHHHHHHhcCCCcEEEeccccchHhHcCC--CcEEEeccCcCcceeCCCCCCcccCHHHHhhhhhhccCCCCCC--
Confidence 999999999999999999999999999999997 6899999999999999999887654322110 0 12346899
Q ss_pred CCCCCcccCcEEeCCCCCChhhhhHHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCC-CcccEE
Q 012378 170 LKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKD-KKASLV 248 (465)
Q Consensus 170 p~CGg~LrP~VV~FGE~lp~~~~~~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d-~~adl~ 248 (465)
| |||.|||+||||||++|++.+++|.+++++||++|||||||+|+|++.||..+++.|+++|+||+++|+.+ ..+|++
T Consensus 169 ~-Cgg~lrP~VV~FGE~lp~~~~~~a~~~~~~aDlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~~t~~~~~~~d~~ 247 (271)
T PTZ00409 169 P-CGGIFKPNVILFGEVIPKSLLKQAEKEIDKCDLLLVVGTSSSVSTATNLCYRAHRKKKKIVEVNISKTYITNRISDYH 247 (271)
T ss_pred C-CCCcccCcEEEeCCcCCHHHHHHHHHHHHcCCEEEEECCCCcccCHHHHHHHHHHcCCCEEEECCCCCCCCCccccEE
Confidence 6 99999999999999999999999999999999999999999999999999999999999999999999987 478999
Q ss_pred EECcHHHHHHHHHHHh
Q 012378 249 IHGFVDKVVAGVMDLL 264 (465)
Q Consensus 249 I~g~~devL~~L~~~L 264 (465)
|+|++++++. +++.|
T Consensus 248 i~~~~~~~~~-~~~~~ 262 (271)
T PTZ00409 248 VRAKFSELAQ-ISDIL 262 (271)
T ss_pred EECcHHHHHH-HHHHh
Confidence 9999999995 44544
No 6
>COG0846 SIR2 NAD-dependent protein deacetylases, SIR2 family [Transcription]
Probab=100.00 E-value=1.1e-58 Score=454.25 Aligned_cols=227 Identities=37% Similarity=0.621 Sum_probs=202.9
Q ss_pred HHHHHHHHHhCCcEEEEecCCccccCCCCCccCCCcccc-cccCC--------CCCccccccc--------ccCCCCHHH
Q 012378 34 IEQLAKLIQKSKHLVVFTGAGISTSCGIPDFRGPNGIWT-LQREG--------KPLPEASLPF--------HRAMPGMTH 96 (465)
Q Consensus 34 i~~la~lIk~Ak~IVVlTGAGIStaSGIPDFRg~~GlW~-~~~~~--------~~~p~~~~~f--------~~a~Pn~~H 96 (465)
+++++++|++|++|||+|||||||+|||||||+.+|+|. .++.. ...|+..|.| ..++||++|
T Consensus 2 ~~~~~~~l~~a~~ivvltGAGiSa~sGIpdFR~~~Gl~~~~~~p~~l~s~~~f~~~p~~~~~f~~~~~~~~~~a~Pn~~H 81 (250)
T COG0846 2 LEEVAQALKEAKRIVVLTGAGISAESGIPDFRSKDGLWSDKYDPEDLASPSGFRRDPELVWDFYSERLRLLYLAQPNKAH 81 (250)
T ss_pred HHHHHHHHHhcCcEEEEeCCccccccCCCcccCCCCCCCCCCCHHHHhCHHHHhhCHHHHHHHHHHHHHhhhcCCCCHHH
Confidence 578999999999999999999999999999999999999 55431 2245555544 358999999
Q ss_pred HHHHHHHHcCCceEEEeecccchhhhcCCCCCceEEcCCCCccccCCCCCCcccchhhhhhhccccCCCCCCCCCCCC-c
Q 012378 97 MALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGA-K 175 (465)
Q Consensus 97 ~aLa~Le~~G~l~~VITQNIDgLH~rAG~p~~kViELHGnl~~~~C~~C~~~y~rd~~~~~i~~~~~~P~C~~p~CGg-~ 175 (465)
++|++|++.|++++||||||||||++||+ ++|+||||++...+|..|+..+..+....... ...+|+| |.||+ .
T Consensus 82 ~~la~le~~~~~~~iiTQNiD~Lhe~AGs--~~Vi~lHGsl~~~~C~~C~~~~~~~~~~~~~~-~~~~p~C--~~Cg~~~ 156 (250)
T COG0846 82 YALAELEDKGKLLRIITQNIDGLHERAGS--KNVIELHGSLKRVRCSKCGNQYYDEDVIKFIE-DGLIPRC--PKCGGPV 156 (250)
T ss_pred HHHHHHhhcCCceEEEecccchHHHHcCC--CcEEEeccceeeeEeCCCcCccchhhhhhhcc-cCCCCcC--ccCCCcc
Confidence 99999999999999999999999999999 59999999999999999998887554222211 1247999 79999 9
Q ss_pred ccCcEEeCCCCCChhhhhHHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCCCcccEEEECcHHH
Q 012378 176 LRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDK 255 (465)
Q Consensus 176 LrP~VV~FGE~lp~~~~~~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~~adl~I~g~~de 255 (465)
|||+||||||.+|...++.+.+.+++||++||+||||.|+|++.+|..+.+.|+++++||+++++.+..+|+.|++++++
T Consensus 157 lrP~VV~fGE~lp~~~~~~~~~~~~~~d~liviGTSl~V~Paa~~p~~~~~~g~~~i~iN~~~~~~~~~~d~~i~~~a~~ 236 (250)
T COG0846 157 LRPDVVWFGEPLPASFLDEALEALKEADLLIVIGTSLKVYPAAGLPELAKRRGAKVIEINLEPTRLDPIADEVIRGDAGE 236 (250)
T ss_pred ccCCEEEeCCCCCHHHHHHHHHHhccCCEEEEECcceEEcChhhhhHHHHhcCCEEEEECCCcccCcchhHHHHHhhHHH
Confidence 99999999999999999999999999999999999999999999999899999999999999999999999999999999
Q ss_pred HHHHHHHHhc
Q 012378 256 VVAGVMDLLN 265 (465)
Q Consensus 256 vL~~L~~~L~ 265 (465)
+++.++..+.
T Consensus 237 ~~~~l~~~~~ 246 (250)
T COG0846 237 VLPLLLEELL 246 (250)
T ss_pred HHHHHHHHhh
Confidence 9999998764
No 7
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=100.00 E-value=9.3e-58 Score=456.65 Aligned_cols=232 Identities=30% Similarity=0.466 Sum_probs=201.6
Q ss_pred HHHHHHHHHHHhCCcEEEEecCCccccCCCCCccCCCcccccccCCC-----CCccc---cc--------ccccCCCCHH
Q 012378 32 EKIEQLAKLIQKSKHLVVFTGAGISTSCGIPDFRGPNGIWTLQREGK-----PLPEA---SL--------PFHRAMPGMT 95 (465)
Q Consensus 32 ~ki~~la~lIk~Ak~IVVlTGAGIStaSGIPDFRg~~GlW~~~~~~~-----~~p~~---~~--------~f~~a~Pn~~ 95 (465)
..|+.++++|++|++|||+|||||||+||||||||++|+|+...... ..+.. .| .+..++||++
T Consensus 7 ~~l~~l~~~i~~~~~ivvlTGAGiS~~SGIPdFR~~~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pn~~ 86 (285)
T PRK05333 7 AALDALQDFVERHPRLFVLTGAGISTDSGIPDYRDRNGQWKRSPPITYQAFMGSDAARRRYWARSMVGWPVFGRAQPNAA 86 (285)
T ss_pred HHHHHHHHHHHhCCcEEEEeCCccccccCCCcccCCCCccccCCcccHHHHhcCchhhHHHHHHHHhhchhcccCCCCHH
Confidence 35678999999999999999999999999999999999998653211 11221 11 1347899999
Q ss_pred HHHHHHHHHcCCceEEEeecccchhhhcCCCCCceEEcCCCCccccCCCCCCcccchhhhhhh----------c------
Q 012378 96 HMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFRDFEVETI----------G------ 159 (465)
Q Consensus 96 H~aLa~Le~~G~l~~VITQNIDgLH~rAG~p~~kViELHGnl~~~~C~~C~~~y~rd~~~~~i----------~------ 159 (465)
|++|++|+++|++++||||||||||+|||. ++|+|+|||++.++|.+|++.|.++.....+ .
T Consensus 87 H~aLa~L~~~g~~~~viTQNIDgLh~rAG~--~~ViElHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (285)
T PRK05333 87 HHALARLGAAGRIERLVTQNVDGLHQRAGS--RDVIELHGRLDGVRCMGCGARHPRAEIQHVLEAANPEWLALEAAPAPD 164 (285)
T ss_pred HHHHHHHHHcCCcccEEecccchhHHHcCC--CCEEeecCCcCEEEECCCCCcCCHHHHHHHHhhcCcchhhhhcccCCC
Confidence 999999999999999999999999999996 7899999999999999999887654322111 0
Q ss_pred ----------cccCCCCCCCCCCCCcccCcEEeCCCCCChhhhhHHHHHhccCCEEEEEccCCCccccCcccHHHhcCCC
Q 012378 160 ----------LKETSRRCSDLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGG 229 (465)
Q Consensus 160 ----------~~~~~P~C~~p~CGg~LrP~VV~FGE~lp~~~~~~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga 229 (465)
....+|+| |.|||.|||+||||||++|++.+.++.+++.+||++|||||||.|.|++.++..+.++|+
T Consensus 165 ~~~~~~~~~~~~~~iP~C--~~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~~DlllvvGTSl~V~p~~~~~~~a~~~g~ 242 (285)
T PRK05333 165 GDADLEWAAFDHFRVPAC--PACGGILKPDVVFFGENVPRERVAAARAALDAADAVLVVGSSLMVYSGYRFCVWAAQQGK 242 (285)
T ss_pred ccccccccccccCCCCCC--CCCCCcccCCEEEcCCCCCHHHHHHHHHHHhcCCEEEEECcCceecchhhhHHHHHHCCC
Confidence 01236899 799999999999999999999999999999999999999999999999999988999999
Q ss_pred eEEEECCCCCCCCCcccEEEECcHHHHHHHHHHHhccC
Q 012378 230 KIVIVNLQKTPKDKKASLVIHGFVDKVVAGVMDLLNLR 267 (465)
Q Consensus 230 ~lViINl~~t~~d~~adl~I~g~~devL~~L~~~L~l~ 267 (465)
++|+||+++++.+..+++.|+|+++++|+.|++.|++.
T Consensus 243 ~~i~IN~~~t~~~~~~~~~i~g~~~evL~~l~~~l~~~ 280 (285)
T PRK05333 243 PIAALNLGRTRADPLLTLKVEASCAQALAALVARLGLA 280 (285)
T ss_pred eEEEECCCCCCCCcceeEEEeCCHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999865
No 8
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=100.00 E-value=2.7e-58 Score=449.05 Aligned_cols=212 Identities=29% Similarity=0.513 Sum_probs=184.2
Q ss_pred CcEEEEecCCccccCCCCCccCCC-cccccccC-CCC-------------Cccccccc------ccCCCCHHHHHHHHHH
Q 012378 45 KHLVVFTGAGISTSCGIPDFRGPN-GIWTLQRE-GKP-------------LPEASLPF------HRAMPGMTHMALVELE 103 (465)
Q Consensus 45 k~IVVlTGAGIStaSGIPDFRg~~-GlW~~~~~-~~~-------------~p~~~~~f------~~a~Pn~~H~aLa~Le 103 (465)
|+|||+|||||||+||||||||++ |+|+.... +.. .|+..|.| ..++||.+|++|++|+
T Consensus 1 k~ivvlTGAGiS~~SGIPdfR~~~~G~w~~~~~~~~~~~~~~~~~~~f~~~p~~~~~~~~~~~~~~a~Pn~~H~~la~L~ 80 (235)
T cd01408 1 KKIVVLVGAGISTSAGIPDFRSPGTGLYANLARYNLPYPEAMFDISYFRKNPRPFYALAKELYPGQFKPSVAHYFIKLLE 80 (235)
T ss_pred CcEEEEeCCccccccCCCCcCCCCCCcchhhhhccCCCHHHhcCHHHHHHChHHHHHHHHHHhcCcCCCCHHHHHHHHHH
Confidence 579999999999999999999999 99986422 111 12222322 3799999999999999
Q ss_pred HcCCceEEEeecccchhhhcCCCCCceEEcCCCCccccCCCCCCcccchhhhhhhccccCCCCCCCCCCCCcccCcEEeC
Q 012378 104 KAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLRDTVLDW 183 (465)
Q Consensus 104 ~~G~l~~VITQNIDgLH~rAG~p~~kViELHGnl~~~~C~~C~~~y~rd~~~~~i~~~~~~P~C~~p~CGg~LrP~VV~F 183 (465)
++|++++||||||||||+|||++.++|+|||||++..+|..|++.|..+.....+. ...+|+| |.|||.|||+||||
T Consensus 81 ~~g~~~~viTQNiD~Lh~raG~~~~~V~elHG~l~~~~C~~C~~~~~~~~~~~~~~-~~~~p~C--~~Cgg~lrP~Vv~F 157 (235)
T cd01408 81 DKGLLLRNYTQNIDTLERVAGVPDDRIIEAHGSFATAHCIKCKHKYPGDWMREDIF-NQEVPKC--PRCGGLVKPDIVFF 157 (235)
T ss_pred hcCCceEEEEeccchHHHHcCCCccCEEEeCcCCCccccccCCCcCCHHHHHHHHh-CCCCccC--CCCCCCccCcEEEC
Confidence 99999999999999999999998889999999999999999999887654333222 2347999 79999999999999
Q ss_pred CCCCChhhhhHHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCC--CcccEEEECcHHHHHHHH
Q 012378 184 EDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKD--KKASLVIHGFVDKVVAGV 260 (465)
Q Consensus 184 GE~lp~~~~~~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d--~~adl~I~g~~devL~~L 260 (465)
||.+|++.+..+.+++++||++|||||||+|+|++.||..+. .|+++|+||+++++.+ ..+|++|+|+++++|++|
T Consensus 158 GE~lp~~~~~~~~~~~~~aDlllvvGTSl~V~pa~~l~~~~~-~~~~~v~iN~~~~~~~~~~~~d~~~~~~~~~~l~~~ 235 (235)
T cd01408 158 GESLPSRFFSHMEEDKEEADLLIVIGTSLKVAPFASLPSRVP-SEVPRVLINREPVGHLGKRPFDVALLGDCDDGVREL 235 (235)
T ss_pred CCCCCHHHHHHHHHHHhcCCEEEEECCCCeeccHHHHHHHHh-CCCcEEEEeCCCCCCCCCCCcCEEEeCCHHHHHHhC
Confidence 999999888889899999999999999999999999997776 5899999999999998 889999999999999864
No 9
>PRK00481 NAD-dependent deacetylase; Provisional
Probab=100.00 E-value=3.5e-57 Score=442.36 Aligned_cols=223 Identities=42% Similarity=0.682 Sum_probs=200.5
Q ss_pred HHHHHHHHHHhCCcEEEEecCCccccCCCCCccCCCcccccccCC--------CCCccccccc--------ccCCCCHHH
Q 012378 33 KIEQLAKLIQKSKHLVVFTGAGISTSCGIPDFRGPNGIWTLQREG--------KPLPEASLPF--------HRAMPGMTH 96 (465)
Q Consensus 33 ki~~la~lIk~Ak~IVVlTGAGIStaSGIPDFRg~~GlW~~~~~~--------~~~p~~~~~f--------~~a~Pn~~H 96 (465)
++++++++|++|++|||+|||||||+|||||||+.+|+|+.+... ...|+..|.| .+++||++|
T Consensus 2 ~l~~l~~~i~~~~~ivi~tGAGiS~~sGip~FR~~~gl~~~~~~~~~~~~~~~~~~p~~~w~f~~~~~~~~~~~~Pn~~H 81 (242)
T PRK00481 2 RIEELAEILDKAKRIVVLTGAGISAESGIPDFRSANGLWEEHRPEDVASPEGFARDPELVWKFYNERRRQLLDAKPNAAH 81 (242)
T ss_pred hHHHHHHHHHhCCCEEEEeCCccccccCCCCccCCCcCccCCCHHHhccHHHHhhCHHHHHHHHHHHHHHhccCCCCHHH
Confidence 578999999999999999999999999999999999999754321 1235544543 379999999
Q ss_pred HHHHHHHHcCCceEEEeecccchhhhcCCCCCceEEcCCCCccccCCCCCCcccchhhhhhhccccCCCCCCCCCCCCcc
Q 012378 97 MALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKL 176 (465)
Q Consensus 97 ~aLa~Le~~G~l~~VITQNIDgLH~rAG~p~~kViELHGnl~~~~C~~C~~~y~rd~~~~~i~~~~~~P~C~~p~CGg~L 176 (465)
++|++|++.|++++||||||||||++||. ++|+|+||+++..+|+.|++.|..+.... ...|+| |.|||.|
T Consensus 82 ~~L~~L~~~~~~~~viTqNiD~L~~~aG~--~~v~elHG~~~~~~C~~C~~~~~~~~~~~-----~~~p~C--~~Cgg~l 152 (242)
T PRK00481 82 RALAELEKLGKLVTVITQNIDGLHERAGS--KNVIELHGSLLRARCTKCGQTYDLDEYLK-----PEPPRC--PKCGGIL 152 (242)
T ss_pred HHHHHHHhcCCCeEEEEeccchhHHHcCC--CceeeccCCcCceeeCCCCCCcChhhhcc-----CCCCCC--CCCCCcc
Confidence 99999999999999999999999999997 79999999999999999998887654331 236789 7999999
Q ss_pred cCcEEeCCCCCChhhhhHHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCCCcccEEEECcHHHH
Q 012378 177 RDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKV 256 (465)
Q Consensus 177 rP~VV~FGE~lp~~~~~~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~~adl~I~g~~dev 256 (465)
||+||||||.+|++.+..+.+++++||++|||||||+|+|+++++..+.++|+++|+||+++++.+..+++.|+|+++++
T Consensus 153 rP~Vv~fge~~~~~~~~~a~~~~~~~dl~lviGTsl~V~p~~~l~~~~~~~~~~~i~iN~~~~~~~~~~~~~i~~~~~~~ 232 (242)
T PRK00481 153 RPDVVLFGEMLPELAIDEAYEALEEADLFIVIGTSLVVYPAAGLPYEAREHGAKTVEINLEPTPLDSLFDLVIHGKAGEV 232 (242)
T ss_pred CCCeEECCCCCCHHHHHHHHHHHhcCCEEEEECCCceEcCHhHHHHHHHHCCCeEEEECCCCCCCCCccCEEEECCHHHH
Confidence 99999999999998899999999999999999999999999999988889999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 012378 257 VAGVMDLL 264 (465)
Q Consensus 257 L~~L~~~L 264 (465)
|+.|+++|
T Consensus 233 l~~l~~~~ 240 (242)
T PRK00481 233 VPELVEEL 240 (242)
T ss_pred HHHHHHHh
Confidence 99999876
No 10
>cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The Sir2 homolog from the archaea Sulfolobus solftaricus deacetylates the non-specific DNA protein Alba to mediate transcription repression.
Probab=100.00 E-value=1.2e-56 Score=434.00 Aligned_cols=206 Identities=43% Similarity=0.661 Sum_probs=182.1
Q ss_pred HHhCCcEEEEecCCccccCCCCCccCCCcccccccCC--------CCCccccccc--------ccCCCCHHHHHHHHHHH
Q 012378 41 IQKSKHLVVFTGAGISTSCGIPDFRGPNGIWTLQREG--------KPLPEASLPF--------HRAMPGMTHMALVELEK 104 (465)
Q Consensus 41 Ik~Ak~IVVlTGAGIStaSGIPDFRg~~GlW~~~~~~--------~~~p~~~~~f--------~~a~Pn~~H~aLa~Le~ 104 (465)
|++|++|||+||||||++|||||||+++|+|+.+... ...|+..|.| ..++||++|++|++|++
T Consensus 1 l~~a~~ivv~tGAGiS~~sGIp~FR~~~glw~~~~~~~~~~~~~f~~~p~~~w~~~~~~~~~~~~a~Pn~~H~~La~L~~ 80 (222)
T cd01413 1 LTKSRKTVVLTGAGISTESGIPDFRSPDGLWKKYDPEEVASIDYFYRNPEEFWRFYKEIILGLLEAQPNKAHYFLAELEK 80 (222)
T ss_pred CCCCCeEEEEECchhhhhhCCCCccCcCCCcCCCCHHHhccHHHHhHCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHh
Confidence 4679999999999999999999999999999865421 1234444433 37899999999999999
Q ss_pred cCCceEEEeecccchhhhcCCCCCceEEcCCCCccccCCCCCCcccchhhhhhhccccCCCCCCCCCCCCcccCcEEeCC
Q 012378 105 AGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLRDTVLDWE 184 (465)
Q Consensus 105 ~G~l~~VITQNIDgLH~rAG~p~~kViELHGnl~~~~C~~C~~~y~rd~~~~~i~~~~~~P~C~~p~CGg~LrP~VV~FG 184 (465)
.|++.+||||||||||+|||. ++|+|+|||++.++|+.|++.|..+.. ..+ ....+|+| |.|||.|||+|||||
T Consensus 81 ~~~~~~viTQNiDgLh~~AG~--~~v~elHG~l~~~~C~~C~~~~~~~~~-~~~-~~~~~p~C--~~Cgg~lrP~Vv~fg 154 (222)
T cd01413 81 QGIIKAIITQNIDGLHQRAGS--KNVIELHGTLQTAYCVNCGSKYDLEEV-KYA-KKHEVPRC--PKCGGIIRPDVVLFG 154 (222)
T ss_pred cCCCeEEEEeccchhhHHcCC--CcEEEccCCcCcceECCCCCCcchhHH-HHh-ccCCCCcC--CCCCCccCCCEEECC
Confidence 999999999999999999996 789999999999999999998876543 111 22457999 799999999999999
Q ss_pred CCCChhhhhHHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCCCcccEEEECc
Q 012378 185 DALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGF 252 (465)
Q Consensus 185 E~lp~~~~~~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~~adl~I~g~ 252 (465)
|.+|++.++++.+++++|||+|||||||+|+|++.||..++++|+++|+||+++++.|..++++|+|+
T Consensus 155 E~lp~~~~~~a~~~~~~~Dl~lvvGTSl~V~p~~~l~~~a~~~g~~~i~iN~~~~~~~~~~~~~i~~~ 222 (222)
T cd01413 155 EPLPQALLREAIEAAKEADLFIVLGSSLVVYPANLLPLIAKENGAKLVIVNADETPFDYIADLVIQDK 222 (222)
T ss_pred CCCCHHHHHHHHHHHhcCCEEEEEccCCEeccHhHHHHHHHHcCCeEEEEcCCCCCCCcceeEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999874
No 11
>PTZ00408 NAD-dependent deacetylase; Provisional
Probab=100.00 E-value=1.2e-55 Score=432.34 Aligned_cols=211 Identities=28% Similarity=0.449 Sum_probs=181.8
Q ss_pred HhCCcEEEEecCCccccCCCCCccCCCcccccccCCC--------CCccccccc----------ccCCCCHHHHHHHHHH
Q 012378 42 QKSKHLVVFTGAGISTSCGIPDFRGPNGIWTLQREGK--------PLPEASLPF----------HRAMPGMTHMALVELE 103 (465)
Q Consensus 42 k~Ak~IVVlTGAGIStaSGIPDFRg~~GlW~~~~~~~--------~~p~~~~~f----------~~a~Pn~~H~aLa~Le 103 (465)
++|++|||+|||||||+||||||||++|+|+.++... ..|+..|.| ..++||.+|++|++|+
T Consensus 2 ~~~~~ivvlTGAGiS~~SGIPdFR~~~Glw~~~~~~~~~~~~~f~~~p~~~~~f~~~~~~~~~~~~~~Pn~~H~~L~~Le 81 (242)
T PTZ00408 2 KACRCITILTGAGISAESGISTFRDGNGLWENHRVEDVATPDAFLRNPALVQRFYNERRRALLSSSVKPNKAHFALAKLE 81 (242)
T ss_pred CCCCeEEEEeCcchhhhhCCCcccCCCCCCCCCChhhcCCHHHHHhCHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHH
Confidence 4689999999999999999999999999998654211 123333433 3679999999999999
Q ss_pred Hc--CCceEEEeecccchhhhcCCCCCceEEcCCCCccccCCCCCCcccchhhhhhhccccCCCCCCCCCCC--CcccCc
Q 012378 104 KA--GILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCG--AKLRDT 179 (465)
Q Consensus 104 ~~--G~l~~VITQNIDgLH~rAG~p~~kViELHGnl~~~~C~~C~~~y~rd~~~~~i~~~~~~P~C~~p~CG--g~LrP~ 179 (465)
+. |++++||||||||||++||. ++|+|+|||++.++|..|++.|..+.... ...|+| |.|| |.+||+
T Consensus 82 ~~~~~~~~~iiTQNiDgLh~~AG~--~~v~elHG~~~~~~C~~C~~~~~~~~~~~-----~~~p~C--~~Cg~~g~lrP~ 152 (242)
T PTZ00408 82 REYRGGKVVVVTQNVDNLHERAGS--THVLHMHGELLKVRCTATGHVFDWTEDVV-----HGSSRC--KCCGCVGTLRPH 152 (242)
T ss_pred HhhcCCcEEEEeecccchhhHcCC--CcEEEecCccceEEECCCCcccCchhhhh-----cCCCcc--ccCCCCCCCCCC
Confidence 86 88899999999999999997 68999999999999999998886543321 236899 6788 999999
Q ss_pred EEeCCC-CCChhhhhHHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCCCcccEEEECcHHHHHH
Q 012378 180 VLDWED-ALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVVA 258 (465)
Q Consensus 180 VV~FGE-~lp~~~~~~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~~adl~I~g~~devL~ 258 (465)
|||||| .+|.+.+. +++.+|||+|||||||+|+|+++||..+++.|+++|+||++++..+..+++.|.|+++++|+
T Consensus 153 vV~FGE~~~~~~~~~---~~~~~~DlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~~~~~~~~~~~~i~g~~~~~l~ 229 (242)
T PTZ00408 153 IVWFGEMPLYMDEIE---SVMSKTDLFVAVGTSGNVYPAAGFVGRAQFYGATTLELNLEEGTNYSQFDESIYGKASVIVP 229 (242)
T ss_pred EEEcCCCCCcHHHHH---HHHHhCCEEEEEccCCccccHHHHHHHHHHcCCeEEEECCCCCCCCccCCEEEECCHHHHHH
Confidence 999999 77765444 44889999999999999999999999999999999999999999988899999999999999
Q ss_pred HHHHHh
Q 012378 259 GVMDLL 264 (465)
Q Consensus 259 ~L~~~L 264 (465)
.|++++
T Consensus 230 ~l~~~~ 235 (242)
T PTZ00408 230 AWVDRV 235 (242)
T ss_pred HHHHHH
Confidence 998876
No 12
>PTZ00410 NAD-dependent SIR2; Provisional
Probab=100.00 E-value=7.8e-55 Score=443.63 Aligned_cols=232 Identities=27% Similarity=0.417 Sum_probs=194.6
Q ss_pred HHHHHHHHHHHHh--CCcEEEEecCCccccCCCCCccCC-CcccccccC-CCCC-------------ccccccc------
Q 012378 31 QEKIEQLAKLIQK--SKHLVVFTGAGISTSCGIPDFRGP-NGIWTLQRE-GKPL-------------PEASLPF------ 87 (465)
Q Consensus 31 ~~ki~~la~lIk~--Ak~IVVlTGAGIStaSGIPDFRg~-~GlW~~~~~-~~~~-------------p~~~~~f------ 87 (465)
++.++.++++|++ +++|||+|||||||+|||||||++ +|+|+.... .... |+..|.|
T Consensus 14 ~~~l~~la~~I~~~~ak~IVvlTGAGISteSGIPdFRs~~~Glw~~~~~~~~~~pe~~fs~~~f~~~P~~f~~~~r~~~~ 93 (349)
T PTZ00410 14 EPTFEGLARYIERNNVTKILVMVGAGISVAAGIPDFRSPHTGIYAKLGKYNLNSPTDAFSLTLLREKPEVFYSIAREMDL 93 (349)
T ss_pred hHHHHHHHHHHHhcCCCCEEEEECcccccccCCCcccCcCCCcCccccccCCCCHHHHcCHHHHHHCHHHHHHHHHHhhc
Confidence 4568899999998 679999999999999999999999 599985321 1112 2223322
Q ss_pred --ccCCCCHHHHHHHHHHHcCCceEEEeecccchhhhcCCCCCceEEcCCCCccccCCCCCCcccchhhhhhhccccCCC
Q 012378 88 --HRAMPGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFRDFEVETIGLKETSR 165 (465)
Q Consensus 88 --~~a~Pn~~H~aLa~Le~~G~l~~VITQNIDgLH~rAG~p~~kViELHGnl~~~~C~~C~~~y~rd~~~~~i~~~~~~P 165 (465)
..++||++|++|+.|++.|++.+||||||||||++||++.++|+|||||++..+|..|++.|..+.....+ ....+|
T Consensus 94 ~~~~a~Pn~aH~aLa~Le~~G~l~~vITQNIDgLh~rAG~~~~~ViElHGsl~~~~C~~C~~~~~~~~~~~~~-~~~~vP 172 (349)
T PTZ00410 94 WPGHFQPTAVHHFIRLLADEGRLLRCCTQNIDGLERAAGVPPSLLVEAHGSFSAASCIECHTPYDIEQAYLEA-RSGKVP 172 (349)
T ss_pred ccCcCCCCHHHHHHHHHHhcCCcceEEecchhhhHhhcCCCcccEEEeccCCCeeEeCCCCCCcchhHHHHHh-hcCCCC
Confidence 14899999999999999999999999999999999999989999999999999999999988765443322 234579
Q ss_pred CCCCCCCCCcccCcEEeCCCCCChhhhhHHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCC---
Q 012378 166 RCSDLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKD--- 242 (465)
Q Consensus 166 ~C~~p~CGg~LrP~VV~FGE~lp~~~~~~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d--- 242 (465)
+| |.|||.|||+||||||.+|+..+. +.+++++||++|||||||+|+|++.||..+. .++++|+||++++...
T Consensus 173 ~C--~~CgG~lRPdVVlFGE~lp~~~~~-a~~~~~~aDllLVIGTSL~V~Paa~l~~~a~-~~~pvviIN~e~~~~~~~r 248 (349)
T PTZ00410 173 HC--STCGGIVKPDVVFFGENLPDAFFN-VHHDIPEAELLLIIGTSLQVHPFALLACVVP-KDVPRVLFNLERVGGLMFR 248 (349)
T ss_pred CC--CCCCCccCCcEEecCCcCCHHHHH-HHHHHHhCCEEEEECcCCcccCHHHHHHHHh-cCCCEEEECccccCCceee
Confidence 99 799999999999999999998787 8899999999999999999999999987766 6799999999875321
Q ss_pred ----------------------------------------------------CcccEEEECcHHHHHHHHHHHhccC
Q 012378 243 ----------------------------------------------------KKASLVIHGFVDKVVAGVMDLLNLR 267 (465)
Q Consensus 243 ----------------------------------------------------~~adl~I~g~~devL~~L~~~L~l~ 267 (465)
...|+.+.|+||+-+..|++.|||+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~g~~~~~~~~~~~~lg~~ 325 (349)
T PTZ00410 249 FPTDPLTTFHADSVAKEGRSSSSSSRSSSDSSTSSSSDGYGQFGDYEADPGGVCRDIFFPGDCQESVRRLAEALGLG 325 (349)
T ss_pred ccCCccccchhhhhhhcccCccccccccccccccccccccccccccccCccccccceeecccchHHHHHHHHHhCcH
Confidence 1456778888888888888888874
No 13
>cd01411 SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=100.00 E-value=4.8e-55 Score=423.62 Aligned_cols=206 Identities=34% Similarity=0.551 Sum_probs=181.1
Q ss_pred HHHHHHhCCcEEEEecCCccccCCCCCccCCCccccccc---CC--------CCCcccccc-------cccCCCCHHHHH
Q 012378 37 LAKLIQKSKHLVVFTGAGISTSCGIPDFRGPNGIWTLQR---EG--------KPLPEASLP-------FHRAMPGMTHMA 98 (465)
Q Consensus 37 la~lIk~Ak~IVVlTGAGIStaSGIPDFRg~~GlW~~~~---~~--------~~~p~~~~~-------f~~a~Pn~~H~a 98 (465)
|+++|++|++|||+|||||||+|||||||+++|+|+... .. ...|+..|. +.+++||.+|++
T Consensus 1 ~~~~i~~a~~ivv~tGAGiS~~sGIpdfR~~~G~w~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~Pn~~H~~ 80 (225)
T cd01411 1 LQHILKNAKRIVFFTGAGVSTASGIPDYRSKNGLYNEIYKYSPEYLLSHDFLEREPEKFYQFVKENLYFPDAKPNIIHQK 80 (225)
T ss_pred ChHHHhhCCCEEEEECCccccccCCCCccCCCcCccCcCCCChHHeecHHHHHHCHHHHHHHHHHHhhCCCCCCCHHHHH
Confidence 467899999999999999999999999999999998642 10 122433342 357899999999
Q ss_pred HHHHHHcCCceEEEeecccchhhhcCCCCCceEEcCCCCccccCCCCCCcccchhhhhhhccccCCCCCCCCCCCCcccC
Q 012378 99 LVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLRD 178 (465)
Q Consensus 99 La~Le~~G~l~~VITQNIDgLH~rAG~p~~kViELHGnl~~~~C~~C~~~y~rd~~~~~i~~~~~~P~C~~p~CGg~LrP 178 (465)
|++|++.+ +++||||||||||++||. ++|+|+|||++..+|..|++.|..+.. ..+|+| |.|||.|||
T Consensus 81 La~L~~~~-~~~viTQNvD~Lh~~aG~--~~v~elHG~~~~~~C~~C~~~~~~~~~-------~~~p~C--~~Cgg~lrP 148 (225)
T cd01411 81 MAELEKMG-LKAVITQNIDGLHQKAGS--KNVVEFHGSLYRIYCTVCGKTVDWEEY-------LKSPYH--AKCGGVIRP 148 (225)
T ss_pred HHHHHHcC-CcEEEEeccchhhhhcCC--CcEEEeCCCcCeeEeCCCCCccchhhc-------CCCCCC--CCCCCEeCC
Confidence 99999988 899999999999999996 689999999999999999988765422 136899 799999999
Q ss_pred cEEeCCCCCChhhhhHHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCCCcccEEEECcHHHH
Q 012378 179 TVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKV 256 (465)
Q Consensus 179 ~VV~FGE~lp~~~~~~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~~adl~I~g~~dev 256 (465)
+||||||.+|.+.+..+.++++++|++|+|||||.|+|+++|+..+. .|+++|+||+++++.+..+++.|+| ++++
T Consensus 149 ~vv~fge~~~~~~~~~~~~~~~~~DlllviGTSl~v~p~~~l~~~~~-~~~~~i~iN~~~~~~~~~~~~~~~~-~~~~ 224 (225)
T cd01411 149 DIVLYEEMLNESVIEEAIQAIEKADLLVIVGTSFVVYPFAGLIDYRQ-AGANLIAINKEPTQLDSPATLVIKD-AVKV 224 (225)
T ss_pred CEEEcCCCCCHHHHHHHHHHHhcCCEEEEECcCCeehhHHHHHHHHh-CCCeEEEECCCCCCCCcchhehhcc-hhhh
Confidence 99999999999999999999999999999999999999999986654 7999999999999999999999999 8875
No 14
>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity.
Probab=100.00 E-value=1.9e-54 Score=417.98 Aligned_cols=208 Identities=37% Similarity=0.584 Sum_probs=184.9
Q ss_pred CcEEEEecCCccccCCCCCccCCCcccccccCC--------CCCccccccc--------ccCCCCHHHHHHHHHHHcCCc
Q 012378 45 KHLVVFTGAGISTSCGIPDFRGPNGIWTLQREG--------KPLPEASLPF--------HRAMPGMTHMALVELEKAGIL 108 (465)
Q Consensus 45 k~IVVlTGAGIStaSGIPDFRg~~GlW~~~~~~--------~~~p~~~~~f--------~~a~Pn~~H~aLa~Le~~G~l 108 (465)
|+|||+|||||||+|||||||+++|+|+.+... ...|+..|.| ..++||.+|++|++|++++++
T Consensus 1 ~~ivi~tGAGiS~~sGIp~fR~~~g~~~~~~~~~~~~~~~f~~~p~~~w~f~~~~~~~~~~~~Pn~~H~~L~~L~~~~~~ 80 (224)
T cd01412 1 RRVVVLTGAGISAESGIPTFRDADGLWARFDPEELATPEAFARDPELVWEFYNWRRRKALRAQPNPAHLALAELERRLPN 80 (224)
T ss_pred CcEEEEeCCccchhhCCCCccCcCCCcCCCChhhcCCHHHHHHCHHHHHHHHHHHHHHccccCCCHHHHHHHHHHhcCCC
Confidence 589999999999999999999999999864321 1234444443 468999999999999999989
Q ss_pred eEEEeecccchhhhcCCCCCceEEcCCCCccccCCCCCCcccchhhhhhhccccCCCCCCCCCCCCcccCcEEeCCCCCC
Q 012378 109 KFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLRDTVLDWEDALP 188 (465)
Q Consensus 109 ~~VITQNIDgLH~rAG~p~~kViELHGnl~~~~C~~C~~~y~rd~~~~~i~~~~~~P~C~~p~CGg~LrP~VV~FGE~lp 188 (465)
++||||||||||++||+ ++|+|+||+++.++|..|+..+..+... ....+|+| |.|||.|||+||||||.+|
T Consensus 81 ~~viTqNiDgL~~~aG~--~~v~e~HG~~~~~~C~~C~~~~~~~~~~----~~~~~p~C--~~Cgg~lrp~Vv~fge~~p 152 (224)
T cd01412 81 VLLITQNVDGLHERAGS--RNVIELHGSLFRVRCSSCGYVGENNEEI----PEEELPRC--PKCGGLLRPGVVWFGESLP 152 (224)
T ss_pred eEEEEccchHhhHHhCC--CceEeeCCCcCccccCCCCCCCCcchhh----hccCCCCC--CCCCCccCCceEECCCCCH
Confidence 99999999999999999 8999999999999999999888654221 23457999 7999999999999999999
Q ss_pred hhhhhHHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCCCcccEEEECcHHHHHHHHH
Q 012378 189 PKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVVAGVM 261 (465)
Q Consensus 189 ~~~~~~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~~adl~I~g~~devL~~L~ 261 (465)
. .++.+.++++++||+|||||||.|.|+++++..++.+|+++|+||+++++.+..+++.|+|+++++|+.|+
T Consensus 153 ~-~~~~~~~~~~~~dl~lvlGTsl~v~p~~~l~~~~~~~~~~~i~iN~~~~~~~~~~~~~i~g~~~~~l~~l~ 224 (224)
T cd01412 153 L-ALLEAVEALAKADLFLVIGTSGVVYPAAGLPEEAKERGARVIEINPEPTPLSPIADFAFRGKAGEVLPALL 224 (224)
T ss_pred H-HHHHHHHHHHcCCEEEEECcCccchhHHHHHHHHHHCCCeEEEECCCCCCCCCcCCEEEECCHHHHHHHhC
Confidence 8 88999999999999999999999999999998888899999999999999999999999999999999873
No 15
>cd01407 SIR2-fam SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer.
Probab=100.00 E-value=2.1e-54 Score=416.55 Aligned_cols=202 Identities=49% Similarity=0.768 Sum_probs=179.0
Q ss_pred CcEEEEecCCccccCCCCCccCCCcccccccCC---------CCCccccccc-------ccCCCCHHHHHHHHHHHcCCc
Q 012378 45 KHLVVFTGAGISTSCGIPDFRGPNGIWTLQREG---------KPLPEASLPF-------HRAMPGMTHMALVELEKAGIL 108 (465)
Q Consensus 45 k~IVVlTGAGIStaSGIPDFRg~~GlW~~~~~~---------~~~p~~~~~f-------~~a~Pn~~H~aLa~Le~~G~l 108 (465)
|+|||+|||||||+|||||||+++|+|+..... ..+|+..|.| ..++||++|++|++|++.|++
T Consensus 1 k~ivv~tGAGiS~~sGIpdfR~~~G~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~Pn~~H~~L~~L~~~~~~ 80 (218)
T cd01407 1 KRIVVLTGAGISTESGIPDFRSPGGLWARLDPEELAFSPEAFRRDPELFWGFYRERRYPLNAQPNPAHRALAELERKGKL 80 (218)
T ss_pred CcEEEEeCCccccccCCCcccCCCCccccCChhhccCCHHHHHHCHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhcCCC
Confidence 589999999999999999999999999865431 1235545544 379999999999999999999
Q ss_pred eEEEeecccchhhhcCCCCCceEEcCCCCccccCCCCCCcccchhhhhhhccccCCCCCCCCCCCCcccCcEEeCCCCCC
Q 012378 109 KFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLRDTVLDWEDALP 188 (465)
Q Consensus 109 ~~VITQNIDgLH~rAG~p~~kViELHGnl~~~~C~~C~~~y~rd~~~~~i~~~~~~P~C~~p~CGg~LrP~VV~FGE~lp 188 (465)
++||||||||||++||++ +|+|+||+++.++|+.|++.+..+.....+ ....+|+| |.||+.|||+||||||.+|
T Consensus 81 ~~viTQNiDgL~~~aG~~--~v~elHG~~~~~~C~~C~~~~~~~~~~~~~-~~~~~p~C--~~Cg~~lrP~Vv~fgE~~p 155 (218)
T cd01407 81 KRVITQNVDGLHQRAGSP--KVIELHGSLFRVRCTKCGKEYPRDELQADI-DREEVPRC--PKCGGLLRPDVVFFGESLP 155 (218)
T ss_pred eeEEEeccchhHHHcCCC--CEEECcCCcCcceeCCCcCCCcHHHHhHhh-ccCCCCcC--CCCCCccCCCeEECCCCCc
Confidence 999999999999999995 999999999999999999988765432212 23458999 7999999999999999999
Q ss_pred hhhhhHHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCCCcccEEEECc
Q 012378 189 PKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGF 252 (465)
Q Consensus 189 ~~~~~~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~~adl~I~g~ 252 (465)
+. +.++.+++.++|++|||||||.|+|+++++..+.++|+++|+||+++++.+..+|+.|+|+
T Consensus 156 ~~-~~~a~~~~~~~Dl~lvlGTSl~V~p~~~l~~~~~~~~~~~i~iN~~~~~~~~~~d~~~~~~ 218 (218)
T cd01407 156 EE-LDEAAEALAKADLLLVIGTSLQVYPAAGLPLYAPERGAPVVIINLEPTPADRKADLVILGD 218 (218)
T ss_pred HH-HHHHHHHHhcCCEEEEeCCCcccccHHHHHHHHHHCCCeEEEECCCCCCCCccceEEEeCC
Confidence 98 9999999999999999999999999999999888899999999999999999999999885
No 16
>cd00296 SIR2 SIR2 superfamily of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer. Also included in this superfamily is a group of uncharacterized Sir2-like proteins which lack certain key catalytic
Probab=100.00 E-value=8.5e-49 Score=375.76 Aligned_cols=202 Identities=49% Similarity=0.715 Sum_probs=177.6
Q ss_pred CcEEEEecCCccccCCCCCccCCC-cccccccCCC---------CCcccccc--------cccCCCCHHHHHHHHHHHcC
Q 012378 45 KHLVVFTGAGISTSCGIPDFRGPN-GIWTLQREGK---------PLPEASLP--------FHRAMPGMTHMALVELEKAG 106 (465)
Q Consensus 45 k~IVVlTGAGIStaSGIPDFRg~~-GlW~~~~~~~---------~~p~~~~~--------f~~a~Pn~~H~aLa~Le~~G 106 (465)
|+|||+||||||++|||||||+.+ |+|+...... ..|+..|. ...++||.+|++|++|++.|
T Consensus 1 k~iv~~tGAGiS~~sGiP~fr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~H~~l~~l~~~~ 80 (222)
T cd00296 1 KRVVVFTGAGISTESGIPDFRGLGTGLWTRLDPEELAFSPEAFRRDPELFWLFYKERRYTPLDAKPNPAHRALAELERKG 80 (222)
T ss_pred CCEEEEeCCccccccCCCCccccccchhhcCCcccccCCHHHHHHCHHHHHHHHHHHHhhhCcCCCCHHHHHHHHHHHcC
Confidence 589999999999999999999999 9998654221 12333332 23799999999999999999
Q ss_pred CceEEEeecccchhhhcCCCCCceEEcCCCCccccCCCCCCcccchhhhhhhccccCCCCCCCCCCCCcccCcEEeCCCC
Q 012378 107 ILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLRDTVLDWEDA 186 (465)
Q Consensus 107 ~l~~VITQNIDgLH~rAG~p~~kViELHGnl~~~~C~~C~~~y~rd~~~~~i~~~~~~P~C~~p~CGg~LrP~VV~FGE~ 186 (465)
++++||||||||||++||++.++|+|+||++...+|..|++.+..+..... ...|+| |.||+.|||+|++|||.
T Consensus 81 ~~~~iiTqNiD~L~~~ag~~~~~v~~lHG~~~~~~C~~C~~~~~~~~~~~~----~~~p~C--~~C~~~l~p~v~~fge~ 154 (222)
T cd00296 81 KLKRIITQNVDGLHERAGSRRNRVIELHGSLDRVRCTSCGKEYPRDEVLER----EKPPRC--PKCGGLLRPDVVDFGEA 154 (222)
T ss_pred CCceEEecChHHHHHHhCCCcCcEEEecCCCCccEECCCCCCcchhhhhhc----cCCCCC--CCCCCcccCceEECCCC
Confidence 999999999999999999988899999999999999999988766544322 458999 79999999999999999
Q ss_pred CChhhhhHHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCC--CcccEEEECc
Q 012378 187 LPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKD--KKASLVIHGF 252 (465)
Q Consensus 187 lp~~~~~~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d--~~adl~I~g~ 252 (465)
+|+..+..+.+++.++|++|+|||||+|+|+..++..+.++|+++++||++++..+ ..+++.++|+
T Consensus 155 ~~~~~~~~~~~~~~~~d~llviGtSl~v~~~~~l~~~~~~~~~~~~~in~~~~~~~~~~~~~~~~~~~ 222 (222)
T cd00296 155 LPKEWFDRALEALLEADLVLVIGTSLTVYPAARLLLRAPERGAPVVIINREPTPADALKKADLVILGD 222 (222)
T ss_pred CCHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHHHCCCcEEEECCCCCCCCCCCcceEEEeCC
Confidence 99888889999999999999999999999999999888889999999999999999 7888888774
No 17
>KOG2683 consensus Sirtuin 4 and related class II sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=5.1e-49 Score=375.90 Aligned_cols=228 Identities=32% Similarity=0.483 Sum_probs=197.3
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEecCCccccCCCCCccCCC-cccccccC-C-------CCC--ccc-------cc-ccc
Q 012378 28 QILQEKIEQLAKLIQKSKHLVVFTGAGISTSCGIPDFRGPN-GIWTLQRE-G-------KPL--PEA-------SL-PFH 88 (465)
Q Consensus 28 ~~l~~ki~~la~lIk~Ak~IVVlTGAGIStaSGIPDFRg~~-GlW~~~~~-~-------~~~--p~~-------~~-~f~ 88 (465)
+.-+++|.+|..+|..+++++|+|||||||+|||||||+++ |+|..... . +.. .+. .| .|.
T Consensus 29 pl~e~~ikkl~~li~~~~rllvlTGAGISTEsGIPDYRS~~VGlYars~~kPI~hqdf~rSs~~RqRYWaRnf~gWprFs 108 (305)
T KOG2683|consen 29 PLCEEDIKKLYRLIGTSDRLLVLTGAGISTESGIPDYRSEDVGLYARSAHKPIQHQDFVRSSRCRQRYWARNFVGWPRFS 108 (305)
T ss_pred CCCHHHHHHHHHHHccCCceEEEecCcccccCCCCcccCCCccceeecCCCcchHHHHhhhhHHHHHHHHHhhcCcchhh
Confidence 34577899999999999999999999999999999999999 99974221 0 000 011 12 378
Q ss_pred cCCCCHHHHHHHHHHHcCCceEEEeecccchhhhcCCCCCceEEcCCCCccccCCCCCCcccchhhhhh-----------
Q 012378 89 RAMPGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFRDFEVET----------- 157 (465)
Q Consensus 89 ~a~Pn~~H~aLa~Le~~G~l~~VITQNIDgLH~rAG~p~~kViELHGnl~~~~C~~C~~~y~rd~~~~~----------- 157 (465)
.++||++|+||+.||+.|++.++||||||+||.|||+ +++.||||+.....|..|+....|+.-.+.
T Consensus 109 ~aqPn~~H~ALs~wE~~~r~~wliTQNVD~LH~kAGS--~~~tElHG~~~~VkCl~C~y~~~R~~~Qdrl~~~NP~fke~ 186 (305)
T KOG2683|consen 109 AAQPNPAHYALSKWEKAGRFQWLITQNVDRLHTKAGS--RMVTELHGSAYQVKCLSCGYIEPRQTFQDRLKYLNPGFKEA 186 (305)
T ss_pred hcCCCchhHHHHHHhhcCceEEEeeccchhhhhhccc--cceeeeccceEEEEecccCcccchHHHHHHHHhcCcchhhh
Confidence 9999999999999999999999999999999999998 689999999999999999987665421110
Q ss_pred --------------hcc----ccCCCCCCCCCCCCcccCcEEeCCCCCChhhhhHHHHHhccCCEEEEEccCCCccccCc
Q 012378 158 --------------IGL----KETSRRCSDLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACN 219 (465)
Q Consensus 158 --------------i~~----~~~~P~C~~p~CGg~LrP~VV~FGE~lp~~~~~~A~~~~~~aDLlLvlGTSL~V~Pa~~ 219 (465)
+.+ .-.+|.| ++|||.|+|+|+||||++|.+..+.+.+.+.+||-+|++||||.|....+
T Consensus 187 ~~~~~~~~pDgDv~lpl~~e~gF~IPeC--~~CgG~lKpdV~fFGdnvn~dkv~~~~~~v~e~dg~LvlGsSL~v~Sg~r 264 (305)
T KOG2683|consen 187 IVSPGHQRPDGDVELPLEFEEGFQIPEC--EKCGGLLKPDVTFFGDNVNKDKVTFCMEKVKECDGFLVLGSSLMVLSGFR 264 (305)
T ss_pred ccCccccCCCCCeecchhhhhcccCCcc--cccCCccCCceEEecCCCChHHHHHHHHHHhccCceEEechhHHHHHHHH
Confidence 000 0136899 69999999999999999999999999999999999999999999999999
Q ss_pred ccHHHhcCCCeEEEECCCCCCCCCcccEEEECcHHHHHHH
Q 012378 220 LPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVVAG 259 (465)
Q Consensus 220 Lp~~a~~~Ga~lViINl~~t~~d~~adl~I~g~~devL~~ 259 (465)
++..|...+.++.|||.++|..|..+++.|...|++||++
T Consensus 265 ~i~~a~~~k~pi~IvNIGpTRaD~~a~lKl~~r~gdvl~~ 304 (305)
T KOG2683|consen 265 FIRHAHEKKKPIAIVNIGPTRADDMATLKLNYRIGEVLKE 304 (305)
T ss_pred HHHHHHhhcCcEEEEecCCcchhheeeeeecchHhhhhhc
Confidence 9999999999999999999999999999999999999975
No 18
>KOG2684 consensus Sirtuin 5 and related class III sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=6.9e-47 Score=385.43 Aligned_cols=239 Identities=27% Similarity=0.423 Sum_probs=199.3
Q ss_pred HHHHHHHHHHHhCCcEEEEecCCccccCCCCCccCCCccccccc-CCCCCcccc----------ccc---------ccCC
Q 012378 32 EKIEQLAKLIQKSKHLVVFTGAGISTSCGIPDFRGPNGIWTLQR-EGKPLPEAS----------LPF---------HRAM 91 (465)
Q Consensus 32 ~ki~~la~lIk~Ak~IVVlTGAGIStaSGIPDFRg~~GlW~~~~-~~~~~p~~~----------~~f---------~~a~ 91 (465)
+.++.+..+|++||+|||+||||||+++||||||+.+|+|...+ ...+.|..- ..| ....
T Consensus 76 ~t~~~~~~~l~kaKrIvVlTGAGVSvs~GIPDFRSs~G~ys~l~~~~l~sp~~mFd~~~fr~d~~~F~~~a~~l~~~~~~ 155 (412)
T KOG2684|consen 76 NTLADFVKLLKKAKRIVVLTGAGVSVSAGIPDFRSSEGIYSKLKAPDLPSPQAMFDISYFRDDPSIFYRFARELKPPSNN 155 (412)
T ss_pred ccHHHHHHHHHhcCeEEEEeCCceeeecCCCCccccccHHHHhhcccCCCHHHhccchhhhcccHHHHHHHHHhcCCccC
Confidence 45788889999999999999999999999999999999997443 233333221 011 2466
Q ss_pred CCHHHHHHHHHHHcCCceEEEeecccchhhhcCCCCCceEEcCCCCccccCCCCCCcccchhhhhhhccccCCCCCCCCC
Q 012378 92 PGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFRDFEVETIGLKETSRRCSDLK 171 (465)
Q Consensus 92 Pn~~H~aLa~Le~~G~l~~VITQNIDgLH~rAG~p~~kViELHGnl~~~~C~~C~~~y~rd~~~~~i~~~~~~P~C~~p~ 171 (465)
|++.|.+|+.|++.|++.++||||||||+++||+...++++|||++....|++|+..+..+...+.+ .....|.| |.
T Consensus 156 ps~~H~Fi~~L~~~gkLlR~YTQNID~LE~~aGl~~~~lVq~HGSf~t~sCt~C~~k~~~~~~~~~~-~~~~vp~C--P~ 232 (412)
T KOG2684|consen 156 PSAFHEFIKLLEKKGKLLRNYTQNIDGLERKAGLSTNKLVQCHGSFKTASCTKCGYKKPFEELREDI-RNQEVPVC--PD 232 (412)
T ss_pred CchHHHHHHHHHhcCceeEEeecccchhhhccCCCcCceEEeccccceeeecccccccChHHHHHHH-hcCcCccC--cc
Confidence 9999999999999999999999999999999999888899999999999999999877666333332 34457889 78
Q ss_pred CCC------------------cccCcEEeCCCCCChhhhhHHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEE
Q 012378 172 CGA------------------KLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVI 233 (465)
Q Consensus 172 CGg------------------~LrP~VV~FGE~lp~~~~~~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lVi 233 (465)
|.+ .|||+||||||.+|+..+.........+||+|||||||.|+|++++|.... +..+.|.
T Consensus 233 C~~~~~~r~~~g~r~~~~~vgvlrP~IvffgE~lP~~~~~~~~~d~d~~DllIviGTSLKV~pV~~iv~~~~-~~vpqIl 311 (412)
T KOG2684|consen 233 CEGKNEKRRGAGKRCESEGVGVLRPDIVFFGENLPDSFHIGVGADLDECDLLIVIGTSLKVRPVAEIVKSFP-AKVPQIL 311 (412)
T ss_pred cccccccccCccccccccCccccccceEEecCCCChHHHhhhhccccccceEEEeCCccccccHHHHHhhhc-ccCcEEE
Confidence 865 899999999999999999888888888999999999999999999975433 3458889
Q ss_pred ECCCCCCCCCcccEEEECcHHHHHHHHHHHhccCCCCccccC
Q 012378 234 VNLQKTPKDKKASLVIHGFVDKVVAGVMDLLNLRIPPYIRID 275 (465)
Q Consensus 234 INl~~t~~d~~adl~I~g~~devL~~L~~~L~l~iP~~~~~~ 275 (465)
||.++-+ ...+|+-+.++||+|...+...+|+.+|.-...+
T Consensus 312 iNr~~v~-h~efd~~ll~~CD~v~~~l~~~~g~~~~~~~~~~ 352 (412)
T KOG2684|consen 312 INRDPVP-HAEFDVELLGDCDDVIRLLCQKCGWLKPLLSLND 352 (412)
T ss_pred ecCcccc-ccccChhhccchHHHHHHHHhhccccchHhhhhh
Confidence 9998544 4578999999999999999999999987654433
No 19
>KOG2682 consensus NAD-dependent histone deacetylases and class I sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=2.4e-46 Score=357.89 Aligned_cols=231 Identities=32% Similarity=0.546 Sum_probs=200.5
Q ss_pred HHHHHHHHHHh--CCcEEEEecCCccccCCCCCccCCC-cccc-cccCCCCCccccc----------cc---------cc
Q 012378 33 KIEQLAKLIQK--SKHLVVFTGAGISTSCGIPDFRGPN-GIWT-LQREGKPLPEASL----------PF---------HR 89 (465)
Q Consensus 33 ki~~la~lIk~--Ak~IVVlTGAGIStaSGIPDFRg~~-GlW~-~~~~~~~~p~~~~----------~f---------~~ 89 (465)
.++.+|.+|+. .++|+|+.||||||++||||||+|+ |+|. +++...+.|+..+ +| .+
T Consensus 23 ~lekvA~~mks~~~~rVi~mVGAGISTsaGIPDFRSP~tGlY~NLqr~~LPYpEAiFel~yF~~nP~PF~tLAkELyPgn 102 (314)
T KOG2682|consen 23 TLEKVARLMKSERCRRVIVMVGAGISTSAGIPDFRSPGTGLYDNLQRYHLPYPEAIFELSYFKKNPEPFFTLAKELYPGN 102 (314)
T ss_pred hHHHHHHHHhhCCcceEEEEecCccccccCCCCCCCCCchhhhhHHHhcCCChhhhhccHHhhcCCchHHHHHHHhCCCC
Confidence 58899999994 6789999999999999999999996 9997 4555555555421 12 36
Q ss_pred CCCCHHHHHHHHHHHcCCceEEEeecccchhhhcCCCCCceEEcCCCCccccCC-CCCCcccchhhhhhhccccCCCCCC
Q 012378 90 AMPGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACP-SCGSEYFRDFEVETIGLKETSRRCS 168 (465)
Q Consensus 90 a~Pn~~H~aLa~Le~~G~l~~VITQNIDgLH~rAG~p~~kViELHGnl~~~~C~-~C~~~y~rd~~~~~i~~~~~~P~C~ 168 (465)
.+||.+|++|.-|..+|.+.++||||||+|.+.||+|.+.++|.||++...+|. .|++.|..++....+. ...+|+|
T Consensus 103 fkPt~~HYflrLl~DK~lL~r~YTQNIDtLER~aGv~d~~lvEAHGtFa~s~Ci~~C~~~yp~e~~ka~i~-~~~vpkC- 180 (314)
T KOG2682|consen 103 FKPTITHYFLRLLHDKGLLLRCYTQNIDTLERIAGVPDEDLVEAHGTFATSHCISSCRHEYPLEWMKAKIM-SEVVPKC- 180 (314)
T ss_pred cCchhHHHHHHHHccccHHHHHHhccchHHHHhcCCCHHHHHHhccceeeeeehhhhcCcCCHHHHHHHHH-hccCCCC-
Confidence 899999999999999999999999999999999999999999999999999999 5999998877655554 3457899
Q ss_pred CCCCCCcccCcEEeCCCCCChhhhhHHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCC----CCc
Q 012378 169 DLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPK----DKK 244 (465)
Q Consensus 169 ~p~CGg~LrP~VV~FGE~lp~~~~~~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~----d~~ 244 (465)
+.|+|.++|+||||||.+|..+++--......+||+|||||||+|+|++.||..+... .+-+.||+++..- .+.
T Consensus 181 -~vC~~lVKP~IVFfGE~LP~rF~e~~~~D~~~~dl~lV~GTSL~V~PFAsLpe~vp~~-v~RlLiNre~~Gp~~~~~r~ 258 (314)
T KOG2682|consen 181 -EVCQGLVKPDIVFFGESLPARFFECMQSDFLKVDLLLVMGTSLQVQPFASLPEKVPLS-VPRLLINREKAGPFLGMIRY 258 (314)
T ss_pred -chhhccccccEEEecCCccHHHHHHHhhcccccceEEEeccceeeeecccchhhhhhc-CceeEecccccCccccCccc
Confidence 6899999999999999999998888888899999999999999999999999876554 5566999998652 235
Q ss_pred ccEEEECcHHHHHHHHHHHhccC
Q 012378 245 ASLVIHGFVDKVVAGVMDLLNLR 267 (465)
Q Consensus 245 adl~I~g~~devL~~L~~~L~l~ 267 (465)
.|+.+.|+||+.+..|++.|||.
T Consensus 259 rDv~~lgd~d~~~eaLvelLGW~ 281 (314)
T KOG2682|consen 259 RDVAWLGDCDQGVEALVELLGWK 281 (314)
T ss_pred ccchhhccHHHHHHHHHHHhCcH
Confidence 89999999999999999999986
No 20
>PF02146 SIR2: Sir2 family; InterPro: IPR003000 These sequences represent the Sirtuin (Sir2-related) family of NAD+-dependent deacetylases. This family of enzymes is broadly conserved from bacteria to humans. In yeast, Sir2 proteins form complexes with other proteins to silence chromatin by accessing histones and deacetylating them. Sir2 proteins have been proposed to play a role in silencing, chromosome stability and ageing []. The bacterial enzyme CobB, an homologue of Sir2, is a phosphoribosyltransferase []. An in vitro ADP ribosyltransferase activity has also been associated with human members of this family []. Sir2-like enzymes employ NAD+ as a cosubstrate in deacetylation reactions [] and catalyse a reaction in which the cleavage of NAD(+)and histone and/or protein deacetylation are coupled to the formation of O-acetyl-ADP-ribose, a novel metabolite. The dependence of the reaction on both NAD(+) and the generation of this potential second messenger offers new clues to understanding the function and regulation of nuclear, cytoplasmic and mitochondrial Sir2-like enzymes []. Silent Information Regulator protein of Saccharomyces cerevisiae (Sir2) is one of several factors critical for silencing at least three loci. Among them, it is unique because it silences the rDNA as well as the mating type loci and telomeres []. Sir2 interacts in a complex with itself and with Sir3 and Sir4, two proteins that are able to interact with nucleosomes. In addition Sir2 also interacts with ubiquitination factors and/or complexes []. Homologues of Sir2 share a core domain including the GAG and NID motifs and a putative C4 Zinc finger. The regions containing these three conserved motifs are individually essential for Sir2 silencing function, as are the four cysteins []. In addition, the conserved residues HG next to the putative Zn finger have been shown to be essential for the ADP ribosyltransferase activity []. ; GO: 0008270 zinc ion binding, 0070403 NAD+ binding, 0006476 protein deacetylation; PDB: 1S5P_A 3PKI_E 3PKJ_F 3K35_A 1ICI_A 1M2K_A 1M2G_A 1M2N_B 1M2H_A 1M2J_A ....
Probab=100.00 E-value=3.7e-47 Score=355.04 Aligned_cols=159 Identities=48% Similarity=0.807 Sum_probs=124.6
Q ss_pred cCCccccCCCCCccC-CCcccccccCC-CCCc-------ccccc-c---------ccCCCCHHHHHHHHHHHcCCceEEE
Q 012378 52 GAGISTSCGIPDFRG-PNGIWTLQREG-KPLP-------EASLP-F---------HRAMPGMTHMALVELEKAGILKFVI 112 (465)
Q Consensus 52 GAGIStaSGIPDFRg-~~GlW~~~~~~-~~~p-------~~~~~-f---------~~a~Pn~~H~aLa~Le~~G~l~~VI 112 (465)
||||||+|||||||| ++|+|+..... ...+ ...|. | ..++||.+|++|++|++.|++++||
T Consensus 1 GAGiS~~SGIpdfR~~~~Glw~~~~~~~l~~~~~~~~~~~~~~~~f~~~~~~~~~~~a~Pn~~H~~La~L~~~g~~~~vi 80 (178)
T PF02146_consen 1 GAGISTASGIPDFRSDPDGLWTKYKPEELATPEAFFSDPEFVWEKFYRFRRKVISKDAEPNPGHRALAELEKKGKLKRVI 80 (178)
T ss_dssp -GGGGGGGT--SSSSTTSCHHHHCHHHHHSSHHHHHHHHHHHHHHHHHHHHHHCTCTS---HHHHHHHHHHHTTSEEEEE
T ss_pred CCccchhhCCCccccCCCCcceeeeccccccccccccccchhhhHHHHHhhhhccccCCCChhHHHHHHHHHhhhhccce
Confidence 999999999999999 99999865421 1111 11222 1 2799999999999999999999999
Q ss_pred eecccchhhhcCCCCCceEEcCCCCccccCCCCCCcccchhhhhhhccccCCCCCCCCCCCCcccCcEEeCCCCCChhhh
Q 012378 113 SQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLRDTVLDWEDALPPKEM 192 (465)
Q Consensus 113 TQNIDgLH~rAG~p~~kViELHGnl~~~~C~~C~~~y~rd~~~~~i~~~~~~P~C~~p~CGg~LrP~VV~FGE~lp~~~~ 192 (465)
||||||||++||++ +|+|||||++.++|..|++.|..+.....+ .....|+| |.||+.|||+||||||.+| +.+
T Consensus 81 TQNIDgLh~~AG~~--~vielHG~l~~~~C~~C~~~~~~~~~~~~~-~~~~~~~C--~~C~~~lrp~vv~fgE~~~-~~~ 154 (178)
T PF02146_consen 81 TQNIDGLHQKAGSP--KVIELHGSLFRLRCSKCGKEYDREDIVDSI-DEEEPPRC--PKCGGLLRPDVVLFGESLP-EEI 154 (178)
T ss_dssp ES-SSSHHHHTTES--CEEETTEEEEEEEETTTSBEEEGHHHHHHH-HTTSSCBC--TTTSCBEEEEE--BTSB-S-HHH
T ss_pred ecccchhhhcccch--hhHHHHhhhceeeecCCCccccchhhcccc-cccccccc--cccCccCCCCeeecCCCCH-HHH
Confidence 99999999999995 999999999999999999998776544433 23456799 7999999999999999999 778
Q ss_pred hHHHHHhccCCEEEEEccCCCccc
Q 012378 193 NPAEKHCKIADVVLCLGTSLQITP 216 (465)
Q Consensus 193 ~~A~~~~~~aDLlLvlGTSL~V~P 216 (465)
..|.+++++|||+|||||||+|+|
T Consensus 155 ~~~~~~~~~~Dl~lviGTSl~V~P 178 (178)
T PF02146_consen 155 EEAIEDAEEADLLLVIGTSLQVYP 178 (178)
T ss_dssp HHHHHHHHH-SEEEEESS-STSTT
T ss_pred HHHHHHHHcCCEEEEEccCcEEEC
Confidence 899999999999999999999998
No 21
>cd01406 SIR2-like Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation.
Probab=98.60 E-value=4.3e-08 Score=95.75 Aligned_cols=79 Identities=24% Similarity=0.249 Sum_probs=54.2
Q ss_pred CcEEEEecCCccccCCCCCccCC-CcccccccCCCC-------Cc-------------------cc-----ccccccCCC
Q 012378 45 KHLVVFTGAGISTSCGIPDFRGP-NGIWTLQREGKP-------LP-------------------EA-----SLPFHRAMP 92 (465)
Q Consensus 45 k~IVVlTGAGIStaSGIPDFRg~-~GlW~~~~~~~~-------~p-------------------~~-----~~~f~~a~P 92 (465)
.++|+|.|||+|.++|+|++++- ..++........ .+ .. ...-...+|
T Consensus 1 g~lvlFiGAG~S~~~glP~W~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (242)
T cd01406 1 GRVVIFVGAGVSVSSGLPDWKTLLDEIASELGLEIDGYSVEAKDENDYLELAELLEKEFGTIGIKINAVLEEKTRPDFEP 80 (242)
T ss_pred CCEEEEecCccccccCCCChHHHHHHHHHHcCCccchhhccccchhhHHHHHHHHHHHhccchhhhHHHHHhccCCCCCC
Confidence 47899999999999999999864 223321110000 00 00 001135789
Q ss_pred CHHHHHHHHHHHcCC-ceEEEeecccchhhhc
Q 012378 93 GMTHMALVELEKAGI-LKFVISQNVDGLHLRS 123 (465)
Q Consensus 93 n~~H~aLa~Le~~G~-l~~VITQNIDgLH~rA 123 (465)
+..|.+|++|...+. ...|||+|.|.|.++|
T Consensus 81 ~~~h~~i~~l~~~~~~~~~iiTTNyD~llE~a 112 (242)
T cd01406 81 SPLHELLLRLFINNEGDVIIITTNYDRLLETA 112 (242)
T ss_pred CHHHHHHHhchhccCCceEEEEcchHHHHHHH
Confidence 999999999987654 6689999999999886
No 22
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=97.39 E-value=0.00086 Score=56.19 Aligned_cols=80 Identities=19% Similarity=0.320 Sum_probs=59.7
Q ss_pred eeeEEEEeeecCCCCCcccceEeEeecccccccccccccCCCeEEEEecccccceEEEEEEeecCCCCCCcccccccccc
Q 012378 292 VNWTLRITSVHGQTAQLPFIKSVEVSFSDRQKYKEASLDKQPFQLKRRTVINETFDIKLKLNFSDGCGCPCTQINIPFDF 371 (465)
Q Consensus 292 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~~~~ 371 (465)
+.|++.|.+.++. ....++++|....-..-.-.-++++++||.+....= |+|+|.|++.|.+..+...+.|.|.+.|
T Consensus 2 h~W~v~Vr~~~~~-d~~~~i~kV~f~LHpsF~~p~r~v~~pPFevte~GW--GeF~i~I~i~f~~~~~~~~~~~~h~L~l 78 (84)
T PF03366_consen 2 HKWTVYVRGLDNE-DLSYFIKKVTFKLHPSFPNPVRVVTKPPFEVTETGW--GEFEIPIKIHFKDPSNEKPVTIQHDLKL 78 (84)
T ss_dssp EEEEEEEEECCCT---TTTEEEEEEES-TTSSS-EEECSSTTEEEEEEES--S--EEEEEEECCCGGCTCEEEEEEE--S
T ss_pred cEEEEEEEeCCCC-CccceEEEEEEECCCCCCCCceEecCCCCEEEEeEe--ccEEEEEEEEEeCCCCCCcEEEEEEEEc
Confidence 5799999999998 588999999986222111134789999999986654 8999999999999999999999999998
Q ss_pred ccC
Q 012378 372 KVP 374 (465)
Q Consensus 372 ~~~ 374 (465)
+..
T Consensus 79 ~~~ 81 (84)
T PF03366_consen 79 HQD 81 (84)
T ss_dssp SSC
T ss_pred CCC
Confidence 764
No 23
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=96.17 E-value=0.014 Score=51.98 Aligned_cols=66 Identities=20% Similarity=0.293 Sum_probs=48.7
Q ss_pred HHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHH
Q 012378 194 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGV 260 (465)
Q Consensus 194 ~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~--~adl~I~g~~devL~~L 260 (465)
.+.+.+++||++|++|+++.-....... .......++|.|+.++..... ..++.|.||+..+|+.|
T Consensus 70 ~~~~~l~~aDlvl~iG~~~~~~~~~~~~-~~~~~~~~~I~I~~d~~~~~~~~~~~~~i~~d~~~~l~~L 137 (137)
T PF00205_consen 70 AANEALEQADLVLAIGTRLSDFNTYGFS-PAFNPDAKIIQIDPDPAEIGKNYPPDVAIVGDIKAFLRAL 137 (137)
T ss_dssp HHHHHHHHSSEEEEESSSSSTTTTTTTT-GCSTTTSEEEEEESSGGGTTSSSEESEEEESHHHHHHHHH
T ss_pred HHHHHhcCCCEEEEECCCCccccccccc-cccCCCCEEEEEECCHHHhCCCCCCCEEEEECHHHHhhCC
Confidence 4667789999999999998653333321 122333499999999987764 46899999999999875
No 24
>PRK08322 acetolactate synthase; Reviewed
Probab=93.51 E-value=0.17 Score=55.16 Aligned_cols=69 Identities=14% Similarity=0.201 Sum_probs=52.8
Q ss_pred HHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHHhc
Q 012378 194 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 265 (465)
Q Consensus 194 ~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~--~adl~I~g~~devL~~L~~~L~ 265 (465)
.+...+++|||+|+||+++.-.+...+. ...+.++|.||.++...+. ..++.|.||+..+|+.|.+.+.
T Consensus 255 ~~~~~l~~aDlil~lG~~l~~~~~~~~~---~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 325 (547)
T PRK08322 255 YVHCAIEHADLIINVGHDVIEKPPFFMN---PNGDKKVIHINFLPAEVDPVYFPQVEVVGDIANSLWQLKERLA 325 (547)
T ss_pred HHHHHHHhCCEEEEECCCCccccccccC---CCCCCeEEEEeCCHHHcCCCcCCCeEEecCHHHHHHHHHHhcc
Confidence 3556788999999999998865544331 2345789999998766543 5689999999999999987764
No 25
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.38 E-value=0.17 Score=55.88 Aligned_cols=71 Identities=21% Similarity=0.333 Sum_probs=52.9
Q ss_pred hHHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHHhc
Q 012378 193 NPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 265 (465)
Q Consensus 193 ~~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~--~adl~I~g~~devL~~L~~~L~ 265 (465)
..+.+.+++||++|+||+++.......+.. ...+.++|.||.++..... ..++.|.||+.++|+.|++.|.
T Consensus 264 ~~~~~~~~~aD~vl~vG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~ 336 (572)
T PRK08979 264 YEANMAMHNADLIFGIGVRFDDRTTNNLEK--YCPNATILHIDIDPSSISKTVRVDIPIVGSADKVLDSMLALLD 336 (572)
T ss_pred HHHHHHHHhCCEEEEEcCCCCccccCchhh--cCCCCeEEEEECCHHHhCCccCCceEEecCHHHHHHHHHHhhh
Confidence 345667889999999999987654333211 2335789999988765443 4689999999999999988764
No 26
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.15 E-value=0.19 Score=55.32 Aligned_cols=70 Identities=21% Similarity=0.324 Sum_probs=52.5
Q ss_pred HHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHHhc
Q 012378 194 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 265 (465)
Q Consensus 194 ~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~--~adl~I~g~~devL~~L~~~L~ 265 (465)
.+.+.+++|||+|+|||++.......+. .....+++|.||.++..... ..++.|.||+..+|+.|.+.|.
T Consensus 265 ~~~~~l~~aDlvl~vG~~~~~~~~~~~~--~~~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~ 336 (574)
T PRK07979 265 EANMTMHNADVIFAVGVRFDDRTTNNLA--KYCPNATVLHIDIDPTSISKTVTADIPIVGDARQVLEQMLELLS 336 (574)
T ss_pred HHHHHHHhCCEEEEeCCCCcccccCChh--hcCCCCeEEEEECCHHHhCCcccCCeEEecCHHHHHHHHHHhhh
Confidence 4566888999999999998765543221 12334689999998876543 4689999999999999987664
No 27
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.15 E-value=0.2 Score=55.19 Aligned_cols=70 Identities=21% Similarity=0.323 Sum_probs=52.5
Q ss_pred HHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHHhc
Q 012378 194 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 265 (465)
Q Consensus 194 ~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~--~adl~I~g~~devL~~L~~~L~ 265 (465)
.+.+.+++|||+|+||+++.......+.. ....+++|.||.++..... ..++.|.+|+.++|+.|++.|.
T Consensus 265 ~~~~~l~~aDlvl~lG~~~~~~~~~~~~~--~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 336 (574)
T PRK06882 265 EANNAMHESDLILGIGVRFDDRTTNNLAK--YCPNAKVIHIDIDPTSISKNVPAYIPIVGSAKNVLEEFLSLLE 336 (574)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCchhh--cCCCCeEEEEECCHHHhcCccCCceEEecCHHHHHHHHHHHhh
Confidence 45567889999999999987665433311 2345689999988765443 4689999999999999988763
No 28
>PRK07524 hypothetical protein; Provisional
Probab=92.93 E-value=0.16 Score=55.37 Aligned_cols=74 Identities=18% Similarity=0.145 Sum_probs=52.0
Q ss_pred hHHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHHhcc
Q 012378 193 NPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLNL 266 (465)
Q Consensus 193 ~~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~--~adl~I~g~~devL~~L~~~L~l 266 (465)
..+.+.+++|||+|+||+++...............++++|-||.++..... ..++.|.+|+.++|+.|.+.+..
T Consensus 255 ~~~~~~~~~aDlvl~vG~~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~L~~L~~~l~~ 330 (535)
T PRK07524 255 PAVRALIAEADVVLAVGTELGETDYDVYFDGGFPLPGELIRIDIDPDQLARNYPPALALVGDARAALEALLARLPG 330 (535)
T ss_pred HHHHHHHHhCCEEEEeCCCcCccccccccccccCCCCCEEEEECCHHHhCCCcCCCceEecCHHHHHHHHHHhccc
Confidence 456677889999999999985433211000011235689999988765433 47899999999999999987753
No 29
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=92.80 E-value=0.21 Score=55.32 Aligned_cols=69 Identities=14% Similarity=0.162 Sum_probs=51.3
Q ss_pred HHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHHh
Q 012378 194 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLL 264 (465)
Q Consensus 194 ~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~--~adl~I~g~~devL~~L~~~L 264 (465)
.+.+.+++||++|++|++|.-.....+.. ...+.++|.||.++..... ..++.|.||+..+|+.|.+.+
T Consensus 262 ~a~~~l~~aD~iL~lG~~l~~~~t~~~~~--~~~~~~~I~id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l 332 (588)
T TIGR01504 262 YGNATLLESDFVFGIGNRWANRHTGSVDV--YTEGRKFVHVDIEPTQIGRVFAPDLGIVSDAKAALKLLVEVA 332 (588)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCcccc--cCCCCeEEEeeCCHHHhcCcCCCCeEEEeCHHHHHHHHHHHh
Confidence 34567889999999999987544333211 2346789999988766443 468999999999999998865
No 30
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=92.75 E-value=0.23 Score=55.28 Aligned_cols=70 Identities=14% Similarity=0.228 Sum_probs=51.8
Q ss_pred HHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCC--CcccEEEECcHHHHHHHHHHHhc
Q 012378 194 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKD--KKASLVIHGFVDKVVAGVMDLLN 265 (465)
Q Consensus 194 ~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d--~~adl~I~g~~devL~~L~~~L~ 265 (465)
.+.+.+.+|||+|+|||++.......+.. ...++++|.||.++.... ...++.|.+|+..+|+.|.+.+.
T Consensus 283 ~~~~~l~~aDlvL~vG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~ig~~~~~~~~i~~D~~~~l~~L~~~l~ 354 (616)
T PRK07418 283 YANFAVTECDLLIAVGARFDDRVTGKLDE--FASRAKVIHIDIDPAEVGKNRRPDVPIVGDVRKVLVKLLERSL 354 (616)
T ss_pred HHHHHHHhCCEEEEEcCCCCccccCChhh--cCCCCeEEEEeCCHHHhCCccCCCeEEecCHHHHHHHHHHhhh
Confidence 45667889999999999986543322211 234578999998876543 35789999999999999988774
No 31
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=92.65 E-value=0.31 Score=53.92 Aligned_cols=69 Identities=17% Similarity=0.317 Sum_probs=50.8
Q ss_pred HHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCC--CCcccEEEECcHHHHHHHHHHHhc
Q 012378 195 AEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPK--DKKASLVIHGFVDKVVAGVMDLLN 265 (465)
Q Consensus 195 A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~--d~~adl~I~g~~devL~~L~~~L~ 265 (465)
+...+.+|||+|+||+++.-.....+. ....+.++|.||.++... ....++.|.+|+.++|+.|.+.|.
T Consensus 277 ~~~~l~~aDlvL~lG~~~~~~~~~~~~--~~~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~ 347 (585)
T CHL00099 277 ANFAVSECDLLIALGARFDDRVTGKLD--EFACNAQVIHIDIDPAEIGKNRIPQVAIVGDVKKVLQELLELLK 347 (585)
T ss_pred HHHHHHhCCEEEEECCCCcccccCCHh--HcCCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHHhh
Confidence 455678999999999998654433221 123467899999887643 335689999999999999988764
No 32
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=92.64 E-value=0.26 Score=54.78 Aligned_cols=70 Identities=20% Similarity=0.333 Sum_probs=51.8
Q ss_pred HHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHHhc
Q 012378 194 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 265 (465)
Q Consensus 194 ~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~--~adl~I~g~~devL~~L~~~L~ 265 (465)
.+.+.+++|||+|+||+++.......+.. ...+.++|.||.++..... ..++.|.||+..+|+.|++.|.
T Consensus 273 ~~~~~l~~aDlvL~lG~~~~~~~~~~~~~--~~~~~~~I~id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~ 344 (595)
T PRK09107 273 EANMAMHDCDVMLCVGARFDDRITGRLDA--FSPNSKKIHIDIDPSSINKNVRVDVPIIGDVGHVLEDMLRLWK 344 (595)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCchhh--cCCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhhh
Confidence 45567889999999999986543322211 2345679999988876543 4789999999999999988763
No 33
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=92.63 E-value=0.26 Score=54.21 Aligned_cols=70 Identities=20% Similarity=0.289 Sum_probs=51.2
Q ss_pred HHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHHhc
Q 012378 194 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 265 (465)
Q Consensus 194 ~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~--~adl~I~g~~devL~~L~~~L~ 265 (465)
.+.+.+.+|||+|+||+++.......+. ......++|.||.++..... ..++.|.+|+.++|+.|.+.+.
T Consensus 262 ~~~~~l~~aD~vl~lG~~l~~~~~~~~~--~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 333 (563)
T PRK08527 262 AANMAMSECDLLISLGARFDDRVTGKLS--EFAKHAKIIHVDIDPSSISKIVNADYPIVGDLKNVLKEMLEELK 333 (563)
T ss_pred HHHHHHHhCCEEEEeCCCCCccccCChh--hcCCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhhh
Confidence 3456788999999999998654432221 12335689999988765433 4689999999999999988764
No 34
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=92.32 E-value=0.29 Score=53.96 Aligned_cols=70 Identities=23% Similarity=0.336 Sum_probs=52.2
Q ss_pred HHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHHhc
Q 012378 194 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 265 (465)
Q Consensus 194 ~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~--~adl~I~g~~devL~~L~~~L~ 265 (465)
.+.+.+++||++|++|+++.......+.. ...+.++|.||.++..... ..++.|.+|+.++|+.|.+.|.
T Consensus 265 ~~~~~l~~aD~il~vG~~~~~~~~~~~~~--~~~~~~vi~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~ 336 (574)
T PRK06466 265 EANMAMHHADVILAVGARFDDRVTNGPAK--FCPNAKIIHIDIDPASISKTIKADIPIVGPVESVLTEMLAILK 336 (574)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCchhh--cCCCCeEEEEECCHHHhCCccCCCeEEecCHHHHHHHHHHHhh
Confidence 45567889999999999987654333211 2235689999988776554 4689999999999999987764
No 35
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=92.31 E-value=0.27 Score=54.74 Aligned_cols=70 Identities=19% Similarity=0.299 Sum_probs=51.1
Q ss_pred HHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCC--CCcccEEEECcHHHHHHHHHHHhc
Q 012378 194 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPK--DKKASLVIHGFVDKVVAGVMDLLN 265 (465)
Q Consensus 194 ~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~--d~~adl~I~g~~devL~~L~~~L~ 265 (465)
.+.+.+++|||+|+|||++.......+.. ...++++|.||.++... ....++.|.||+.++|+.|.+.|.
T Consensus 290 ~~~~~l~~aDlvL~lG~~l~~~~t~~~~~--~~~~~~~i~Id~d~~~i~~~~~~~~~i~gD~~~~l~~L~~~l~ 361 (612)
T PRK07789 290 AAVAALQRSDLLIALGARFDDRVTGKLDS--FAPDAKVIHADIDPAEIGKNRHADVPIVGDVKEVIAELIAALR 361 (612)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCChhh--cCCCCcEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhhh
Confidence 45677889999999999987543222211 12456789999887543 335789999999999999988764
No 36
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=92.23 E-value=0.35 Score=52.80 Aligned_cols=69 Identities=17% Similarity=0.255 Sum_probs=50.9
Q ss_pred HHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHHhc
Q 012378 194 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 265 (465)
Q Consensus 194 ~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~--~adl~I~g~~devL~~L~~~L~ 265 (465)
.+.+.+++|||+|++|+++.-+....+. .....++|.||.++..... ..++.|.||+.++|+.|.+.+.
T Consensus 255 ~~~~~~~~aDlvl~lG~~~~~~~~~~~~---~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 325 (539)
T TIGR02418 255 PGDRLLKQADLVITIGYDPIEYEPRNWN---SENDATIVHIDVEPAQIDNNYQPDLELVGDIASTLDLLAERIP 325 (539)
T ss_pred HHHHHHHhCCEEEEecCcccccCccccC---cCCCCeEEEEeCChHHcCCccCCCeEEecCHHHHHHHHHHhhc
Confidence 4556788999999999997644322221 1234689999998876543 4689999999999999987663
No 37
>PRK05858 hypothetical protein; Provisional
Probab=92.09 E-value=0.43 Score=52.23 Aligned_cols=79 Identities=15% Similarity=0.173 Sum_probs=54.8
Q ss_pred CCCCCChhhhhHHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHH
Q 012378 183 WEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGV 260 (465)
Q Consensus 183 FGE~lp~~~~~~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~--~adl~I~g~~devL~~L 260 (465)
|.|..|...-..+.+.+++||++|.||+++........ ...+.++|.|+.++..... ..++.|.+|+..+++.|
T Consensus 244 ~~~~hpl~~~~~~~~~l~~aD~vl~vG~~~~~~~~~~~----~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L 319 (542)
T PRK05858 244 VPADHPLAFSRARGKALGEADVVLVVGVPMDFRLGFGV----FGGTAQLVHVDDAPPQRAHHRPVAAGLYGDLSAILSAL 319 (542)
T ss_pred CCCCCchhhhHHHHHHHHhCCEEEEECCCCcccccccc----cCCCCEEEEECCCHHHhcCCCCCceEEeCCHHHHHHHH
Confidence 44544543323455678899999999998754322211 1224789999998765443 46899999999999999
Q ss_pred HHHhc
Q 012378 261 MDLLN 265 (465)
Q Consensus 261 ~~~L~ 265 (465)
.+.+.
T Consensus 320 ~~~l~ 324 (542)
T PRK05858 320 AGAGG 324 (542)
T ss_pred HHhcc
Confidence 87664
No 38
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=92.09 E-value=0.31 Score=53.61 Aligned_cols=70 Identities=17% Similarity=0.243 Sum_probs=51.6
Q ss_pred HHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHHhc
Q 012378 195 AEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 265 (465)
Q Consensus 195 A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~--~adl~I~g~~devL~~L~~~L~ 265 (465)
+.+.+.+|||+|+||+++.-.+...+.. ....+.++|.||.++..... ..++.|.+|+..+|+.|++.|.
T Consensus 267 ~~~~~~~aDlvl~lG~~~~~~~~~~~~~-~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 338 (572)
T PRK06456 267 ASMAALESDAMLVVGARFSDRTFTSYDE-MVETRKKFIMVNIDPTDGEKAIKVDVGIYGNAKIILRELIKAIT 338 (572)
T ss_pred HHHHHHhCCEEEEECCCCchhhcccccc-ccCCCCeEEEEeCChHHhCCccCCCeEEecCHHHHHHHHHHHhh
Confidence 4566789999999999987655433311 11235689999988766543 4689999999999999988664
No 39
>PLN02470 acetolactate synthase
Probab=91.98 E-value=0.36 Score=53.40 Aligned_cols=70 Identities=19% Similarity=0.267 Sum_probs=50.7
Q ss_pred HHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHHhc
Q 012378 194 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 265 (465)
Q Consensus 194 ~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~--~adl~I~g~~devL~~L~~~L~ 265 (465)
.+.+.+++|||+|+||+++.......+. ......++|.||.++..... ..++.|.+|+..+|..|.+.|.
T Consensus 272 ~~~~~~~~aDlvl~lG~~l~~~~~~~~~--~~~~~~~~I~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~ 343 (585)
T PLN02470 272 YANYAVDSADLLLAFGVRFDDRVTGKLE--AFASRASIVHIDIDPAEIGKNKQPHVSVCADVKLALQGLNKLLE 343 (585)
T ss_pred HHHHHHHhCCEEEEECCCCcccccCChh--hcCCCCeEEEEECCHHHhCCCcCCCeEEecCHHHHHHHHHHhhh
Confidence 3556788999999999998654332221 11234678999988765443 4689999999999999987764
No 40
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=91.92 E-value=0.34 Score=53.59 Aligned_cols=70 Identities=19% Similarity=0.224 Sum_probs=51.0
Q ss_pred HHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHHhc
Q 012378 194 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 265 (465)
Q Consensus 194 ~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~--~adl~I~g~~devL~~L~~~L~ 265 (465)
.+.+.+++|||+|+||+++.......... ....+++|.||.++..... ..++.|.||+..+|+.|.+.|+
T Consensus 273 ~~~~~l~~aDlil~vG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~i~~~~~~~~~i~gD~~~~l~~L~~~l~ 344 (570)
T PRK06725 273 AANMAVTECDLLLALGVRFDDRVTGKLEL--FSPHSKKVHIDIDPSEFHKNVAVEYPVVGDVKKALHMLLHMSI 344 (570)
T ss_pred HHHHHHHhCCEEEEeCCCCCccccCcccc--cCCCCeEEEEeCCHHHhCCCCCCCeEEecCHHHHHHHHHHhcc
Confidence 35567889999999999986544322211 1234678999988766543 4689999999999999987663
No 41
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=91.89 E-value=0.43 Score=52.35 Aligned_cols=82 Identities=18% Similarity=0.209 Sum_probs=54.0
Q ss_pred CCCCCChhhhhHHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCC--CcccEEEECcHHHHHHHH
Q 012378 183 WEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKD--KKASLVIHGFVDKVVAGV 260 (465)
Q Consensus 183 FGE~lp~~~~~~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d--~~adl~I~g~~devL~~L 260 (465)
|.|..|...=..+.+.+++|||+|++|+.+.-.+...... ....+.++|.|+.++.... ...++.|.||+.++|+.|
T Consensus 247 ~p~~hp~~~g~~~~~~~~~aDlvl~lG~~~~~~~~~~~~~-~~~~~~~vI~id~d~~~~~~~~~~~~~i~~D~~~~l~~L 325 (554)
T TIGR03254 247 LPDTHPQSAAAARSFALAEADVVMLVGARLNWLLSHGKGK-LWGEDAKFIQVDIEPTEMDSNRPIAAPVVGDIGSVVQAL 325 (554)
T ss_pred CCCCCchhhhHHHHHHHhcCCEEEEECCCCchhhccCchh-hcCCCCcEEEcCCCHHHhCCCcCCceEEecCHHHHHHHH
Confidence 4444443211233456889999999999986443222110 1123578888888765433 356899999999999999
Q ss_pred HHHhc
Q 012378 261 MDLLN 265 (465)
Q Consensus 261 ~~~L~ 265 (465)
.+.|.
T Consensus 326 ~~~l~ 330 (554)
T TIGR03254 326 LSAAK 330 (554)
T ss_pred HHHhh
Confidence 88774
No 42
>PRK11269 glyoxylate carboligase; Provisional
Probab=91.79 E-value=0.37 Score=53.38 Aligned_cols=69 Identities=16% Similarity=0.179 Sum_probs=50.7
Q ss_pred HHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHHh
Q 012378 194 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLL 264 (465)
Q Consensus 194 ~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~--~adl~I~g~~devL~~L~~~L 264 (465)
.+.+.+++|||+|++|+++.......+ .....+.++|.||.++..... ..++.|.+|+..+|+.|.+.+
T Consensus 263 ~~~~~~~~aDlvl~lG~~~~~~~~~~~--~~~~~~~~~i~Vd~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l 333 (591)
T PRK11269 263 YGNATLLASDFVLGIGNRWANRHTGSV--EVYTKGRKFVHVDIEPTQIGRVFGPDLGIVSDAKAALELLVEVA 333 (591)
T ss_pred HHHHHHHhCCEEEEeCCCCCccccCch--hhcCCCCeEEEeeCCHHHhCCCCCCCeEEEeCHHHHHHHHHHHh
Confidence 345668899999999999765433222 112346789999988766433 468999999999999998766
No 43
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=91.63 E-value=0.43 Score=52.46 Aligned_cols=70 Identities=20% Similarity=0.312 Sum_probs=51.3
Q ss_pred HHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHHhc
Q 012378 194 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 265 (465)
Q Consensus 194 ~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~--~adl~I~g~~devL~~L~~~L~ 265 (465)
.+.+.+++|||+|++|+++.......+ .......++|.||.++..... ..++.|.+|+.++|+.|.+.+.
T Consensus 270 ~~~~~l~~aDlvl~lG~~~~~~~~~~~--~~~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 341 (564)
T PRK08155 270 STNYILQEADLLIVLGARFDDRAIGKT--EQFCPNAKIIHVDIDRAELGKIKQPHVAIQADVDDVLAQLLPLVE 341 (564)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCCH--hhcCCCCeEEEEECCHHHhCCCcCCCeEEecCHHHHHHHHHHhhc
Confidence 355678899999999999876543222 112345689999998876543 4689999999999999977653
No 44
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=91.59 E-value=0.4 Score=52.92 Aligned_cols=70 Identities=17% Similarity=0.187 Sum_probs=50.7
Q ss_pred HHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCCC-cccEEEECcHHHHHHHHHHHhc
Q 012378 194 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK-KASLVIHGFVDKVVAGVMDLLN 265 (465)
Q Consensus 194 ~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~-~adl~I~g~~devL~~L~~~L~ 265 (465)
.+.+.++++||+|++|+.+.......+. ....+.++|.||.++..... ..++.|.||+..+|+.|.+.|.
T Consensus 277 ~~~~~l~~aDlvl~lG~~~~~~~~~~~~--~~~~~~~~i~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 347 (578)
T PRK06112 277 HLRDLVREADVVLLVGTRTNQNGTDSWS--LYPEQAQYIHIDVDGEEVGRNYEALRLVGDARLTLAALTDALR 347 (578)
T ss_pred HHHHHHHhCCEEEEECCCCCcccccccc--ccCCCCeEEEEECChHHhCccccceEEEeCHHHHHHHHHHhhh
Confidence 4567788999999999998765433331 12245789999988754322 2368999999999999987663
No 45
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=91.58 E-value=0.36 Score=52.82 Aligned_cols=69 Identities=13% Similarity=0.288 Sum_probs=49.7
Q ss_pred HHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHHh
Q 012378 194 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLL 264 (465)
Q Consensus 194 ~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~--~adl~I~g~~devL~~L~~~L 264 (465)
.+.+.+++||++|++|+++...-...+. ....++++|.||.++..... ..++.|.+|+..+++.|.+.+
T Consensus 255 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~--~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~l~~~~ 325 (548)
T PRK08978 255 AANLAVQECDLLIAVGARFDDRVTGKLN--TFAPHAKVIHLDIDPAEINKLRQAHVALQGDLNALLPALQQPL 325 (548)
T ss_pred HHHHHHHhCCEEEEEcCCCCccccCCcc--ccCCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhc
Confidence 4566788999999999997653222221 12335689999988765443 568999999999999887654
No 46
>PF13289 SIR2_2: SIR2-like domain
Probab=91.50 E-value=0.24 Score=43.47 Aligned_cols=62 Identities=15% Similarity=0.128 Sum_probs=33.8
Q ss_pred hhHHHHHhccCCEEEEEccCCCccccCcccHHHhcC-CC---eEEEECCCCCCCCCcccEEEECcHHHHHHHHHHHhccC
Q 012378 192 MNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRG-GG---KIVIVNLQKTPKDKKASLVIHGFVDKVVAGVMDLLNLR 267 (465)
Q Consensus 192 ~~~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~-Ga---~lViINl~~t~~d~~adl~I~g~~devL~~L~~~L~l~ 267 (465)
+..+...+-.+.-+|+||-|+.=.....+...+.+. +. +.++|.+.+. ++..+.+++..|++
T Consensus 76 ~~~~l~~~l~~~~~lfiGys~~D~~i~~~l~~~~~~~~~~~~~~~~v~~~~~--------------~~~~~~~~~~~~i~ 141 (143)
T PF13289_consen 76 FPNFLRSLLRSKTLLFIGYSFNDPDIRQLLRSALENSGKSRPRHYIVIPDPD--------------DENEREFLEKYGIE 141 (143)
T ss_pred HHHHHHHHHcCCCEEEEEECCCCHHHHHHHHHHHHhccCCCccEEEEEcCCc--------------hHHHHHHHHHcCCE
Confidence 333333344667888889998765555554333332 22 4555555442 35555566665543
No 47
>PRK06154 hypothetical protein; Provisional
Probab=91.48 E-value=0.43 Score=52.73 Aligned_cols=68 Identities=18% Similarity=0.165 Sum_probs=50.3
Q ss_pred HHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCC--CcccEEEECcHHHHHHHHHHHhc
Q 012378 194 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKD--KKASLVIHGFVDKVVAGVMDLLN 265 (465)
Q Consensus 194 ~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d--~~adl~I~g~~devL~~L~~~L~ 265 (465)
.+.+.+++|||+|+||++|....... ....+.++|.||.++.... ...++.|.||+.++|+.|++.|.
T Consensus 273 ~~~~~~~~aDlvL~lG~~l~~~~~~~----~~~~~~~vI~id~d~~~~~~~~~~~~~i~~D~~~~L~~L~~~l~ 342 (565)
T PRK06154 273 TVAHFLREADVLFGIGCSLTRSYYGL----PMPEGKTIIHSTLDDADLNKDYPIDHGLVGDAALVLKQMIEELR 342 (565)
T ss_pred HHHHHHHhCCEEEEECCCCcccccCc----cCCCCCeEEEEECCHHHhccccCCCeeEEcCHHHHHHHHHHHhh
Confidence 45667889999999999987532211 1234578888988876443 35689999999999999988765
No 48
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=91.43 E-value=0.41 Score=52.80 Aligned_cols=70 Identities=14% Similarity=0.186 Sum_probs=50.5
Q ss_pred HHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHHhc
Q 012378 194 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 265 (465)
Q Consensus 194 ~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~--~adl~I~g~~devL~~L~~~L~ 265 (465)
.+.+.+++||++|+||+++.-....... .....+++|.||.++..... ..++.|.+|+..+|+.|.+.|.
T Consensus 269 ~~~~~~~~aD~vl~lG~~l~~~~~~~~~--~~~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~ 340 (566)
T PRK07282 269 AANIAMTEADFMINIGSRFDDRLTGNPK--TFAKNAKVAHIDIDPAEIGKIIKTDIPVVGDAKKALQMLLAEPT 340 (566)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCChh--hcCCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhhc
Confidence 4556788999999999998643322221 11235689999988765443 4589999999999999987663
No 49
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=91.37 E-value=0.43 Score=52.70 Aligned_cols=67 Identities=12% Similarity=0.175 Sum_probs=49.0
Q ss_pred HHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCC-----CCcccEEEECcHHHHHHHHHHHhc
Q 012378 195 AEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPK-----DKKASLVIHGFVDKVVAGVMDLLN 265 (465)
Q Consensus 195 A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~-----d~~adl~I~g~~devL~~L~~~L~ 265 (465)
+.+.+++|||+|+|||.+...+... ....+.++|.||.++... ....++.|.||+..+++.|.+.|.
T Consensus 273 ~~~~~~~aDlvl~lG~~l~~~~~~~----~~~~~~~vi~Id~d~~~~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 344 (569)
T PRK08327 273 PRADLAEADLVLVVDSDVPWIPKKI----RPDADARVIQIDVDPLKSRIPLWGFPCDLCIQADTSTALDQLEERLK 344 (569)
T ss_pred cchhhhhCCEEEEeCCCCCCccccc----cCCCCCeEEEEeCChhhhcccccCcceeEEEecCHHHHHHHHHHHHh
Confidence 4566789999999999875332211 112356899999887543 234689999999999999998875
No 50
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=91.25 E-value=0.42 Score=52.43 Aligned_cols=70 Identities=17% Similarity=0.278 Sum_probs=50.9
Q ss_pred HHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHHhc
Q 012378 194 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 265 (465)
Q Consensus 194 ~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~--~adl~I~g~~devL~~L~~~L~ 265 (465)
.+.+.+.+|||+|+||+.+.......+.. ...+.++|.||.++..... ..++.|.+|+.++|+.|.+.+.
T Consensus 260 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 331 (558)
T TIGR00118 260 TANLAVHECDLIIAVGARFDDRVTGNLAK--FAPNAKIIHIDIDPAEIGKNVRVDIPIVGDARNVLEELLKKLF 331 (558)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCchhh--cCCCCcEEEEeCCHHHhCCcCCCCeEEecCHHHHHHHHHHhhh
Confidence 44567789999999999986543222211 2235689999988755333 4689999999999999988773
No 51
>PRK08266 hypothetical protein; Provisional
Probab=91.04 E-value=0.35 Score=52.83 Aligned_cols=69 Identities=22% Similarity=0.308 Sum_probs=50.4
Q ss_pred HHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCC-CcccEEEECcHHHHHHHHHHHhc
Q 012378 194 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKD-KKASLVIHGFVDKVVAGVMDLLN 265 (465)
Q Consensus 194 ~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d-~~adl~I~g~~devL~~L~~~L~ 265 (465)
.+.+.+.+|||+|++|+++... ...+. ....+.++|.||.++.... ...++.|.+|+..+|+.|.+.|.
T Consensus 256 ~~~~~~~~aDlvl~lG~~~~~~-~~~~~--~~~~~~~~i~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 325 (542)
T PRK08266 256 AAYELWPQTDVVIGIGSRLELP-TFRWP--WRPDGLKVIRIDIDPTEMRRLKPDVAIVADAKAGTAALLDALS 325 (542)
T ss_pred HHHHHHHhCCEEEEeCCCcCcc-ccccc--ccCCCCcEEEEECCHHHhCCcCCCceEecCHHHHHHHHHHhhh
Confidence 3456788999999999998765 22221 1233568899888765433 35689999999999999988764
No 52
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=91.03 E-value=0.44 Score=52.29 Aligned_cols=72 Identities=19% Similarity=0.140 Sum_probs=50.9
Q ss_pred HHHHHhccCCEEEEEccCCCccccCcccHHH-hcCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHHhc
Q 012378 194 PAEKHCKIADVVLCLGTSLQITPACNLPLKC-LRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 265 (465)
Q Consensus 194 ~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a-~~~Ga~lViINl~~t~~d~--~adl~I~g~~devL~~L~~~L~ 265 (465)
.+.+.+++|||+|++|+++.-.+...+.... .....++|.||.++..... ..++.|.+|+..+|+.|.+.+.
T Consensus 263 ~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~~~i~vd~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~~~ 337 (557)
T PRK08199 263 ALAARIREADLVLAVGTRLGEVTTQGYTLLDIPVPRQTLVHVHPDAEELGRVYRPDLAIVADPAAFAAALAALEP 337 (557)
T ss_pred HHHHHHHhCCEEEEeCCCCccccccccccccccCCCCeEEEEeCCHHHhCCccCCCeEEecCHHHHHHHHHhccc
Confidence 4566788999999999998655533221111 1135689999988765443 5689999999999999987543
No 53
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=91.02 E-value=0.48 Score=52.08 Aligned_cols=70 Identities=16% Similarity=0.284 Sum_probs=50.6
Q ss_pred HHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHHhc
Q 012378 194 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 265 (465)
Q Consensus 194 ~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~--~adl~I~g~~devL~~L~~~L~ 265 (465)
.+.+.+++||++|+||+++.......+ .....++++|.||.++..... ..++.|.||+..+|+.|.+.+.
T Consensus 266 ~~~~~l~~aD~vl~lG~~~~~~~~~~~--~~~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 337 (561)
T PRK06048 266 YANYAIQESDLIIAVGARFDDRVTGKL--ASFAPNAKIIHIDIDPAEISKNVKVDVPIVGDAKQVLKSLIKYVQ 337 (561)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCCh--hhcCCCCeEEEEECCHHHhCCCCCCCeEEEeCHHHHHHHHHHhcc
Confidence 355678899999999999764322222 112345789999988754432 5689999999999999988764
No 54
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=90.99 E-value=0.41 Score=53.02 Aligned_cols=72 Identities=28% Similarity=0.267 Sum_probs=50.8
Q ss_pred HHHHHhccCCEEEEEccCCCccccCc-ccHHHhcCCCeEEEECCCCCCCC--CcccEEEECcHHHHHHHHHHHhc
Q 012378 194 PAEKHCKIADVVLCLGTSLQITPACN-LPLKCLRGGGKIVIVNLQKTPKD--KKASLVIHGFVDKVVAGVMDLLN 265 (465)
Q Consensus 194 ~A~~~~~~aDLlLvlGTSL~V~Pa~~-Lp~~a~~~Ga~lViINl~~t~~d--~~adl~I~g~~devL~~L~~~L~ 265 (465)
.+.+.+++||++|+|||+|.-..... ........++++|.|+.++.... ...++.|.||+..+|+.|.+.|.
T Consensus 259 ~~~~~~~~aDlvl~lG~~l~~~~~~~~~~~~~~~~~~~iI~Id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 333 (588)
T PRK07525 259 AAMELIAKADVVLALGTRLNPFGTLPQYGIDYWPKDAKIIQVDINPDRIGLTKKVSVGICGDAKAVARELLARLA 333 (588)
T ss_pred HHHHHHHhCCEEEEECCCCchhhcccccccccCCCCCeEEEEECCHHHhCCCCCCCceEecCHHHHHHHHHHhhh
Confidence 45567889999999999986422110 00011124678999998876543 35789999999999999988774
No 55
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=90.93 E-value=0.63 Score=51.28 Aligned_cols=70 Identities=17% Similarity=0.196 Sum_probs=49.2
Q ss_pred HHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCC--CcccEEEECcHHHHHHHHHHHhc
Q 012378 195 AEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKD--KKASLVIHGFVDKVVAGVMDLLN 265 (465)
Q Consensus 195 A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d--~~adl~I~g~~devL~~L~~~L~ 265 (465)
+...+++|||+|+||+++.-......+. ....+.++|.|+.++.... ...++.|.||+..+|+.|.+.|.
T Consensus 266 ~~~~l~~aDlvl~lG~~~~~~~~~~~~~-~~~~~~~ii~Id~d~~~~~~~~~~~~~i~~D~~~~L~~L~~~l~ 337 (569)
T PRK09259 266 RSLALANADVVLLVGARLNWLLSHGKGK-TWGADKKFIQIDIEPQEIDSNRPIAAPVVGDIGSVMQALLAGLK 337 (569)
T ss_pred HHHHHhcCCEEEEeCCCCchhcccCchh-ccCCCCcEEEecCChHHhcCCccCceeEecCHHHHHHHHHHHhh
Confidence 3456889999999999985433221110 1124578998888766543 35679999999999999988774
No 56
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=90.92 E-value=0.54 Score=52.02 Aligned_cols=70 Identities=16% Similarity=0.284 Sum_probs=50.4
Q ss_pred HHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHHhc
Q 012378 194 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 265 (465)
Q Consensus 194 ~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~--~adl~I~g~~devL~~L~~~L~ 265 (465)
.+.+.+++|||+|+||+.+.-.....+. ....+.++|.||.++..... ..++.|.+|+..+|+.|++.|.
T Consensus 262 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~--~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~L~~L~~~l~ 333 (586)
T PRK06276 262 AANYSVTESDVLIAIGCRFSDRTTGDIS--SFAPNAKIIHIDIDPAEIGKNVRVDVPIVGDAKNVLRDLLAELM 333 (586)
T ss_pred HHHHHHHcCCEEEEECCCCCccccCCcc--ccCCCCeEEEEECCHHHhCCcCCCceEEecCHHHHHHHHHHhhh
Confidence 4557788999999999987643222221 12345688999988765433 4689999999999999988764
No 57
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=90.76 E-value=0.49 Score=52.42 Aligned_cols=71 Identities=20% Similarity=0.279 Sum_probs=50.9
Q ss_pred HHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHHhc
Q 012378 194 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 265 (465)
Q Consensus 194 ~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~--~adl~I~g~~devL~~L~~~L~ 265 (465)
.+.+.+++|||+|+||+++.......... ....++++|.||.++..... ..++.|.+|+.++|+.|.+.+.
T Consensus 280 ~a~~~~~~aDlvl~lG~~~~~~~~~~~~~-~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 352 (587)
T PRK06965 280 EANMAMQHCDVLIAIGARFDDRVIGNPAH-FASRPRKIIHIDIDPSSISKRVKVDIPIVGDVKEVLKELIEQLQ 352 (587)
T ss_pred HHHHHHHhCCEEEEECCCCcccccCChhh-cCCCCceEEEEeCCHHHhCCcCCCCeEEecCHHHHHHHHHHhhh
Confidence 45567889999999999986553322101 11234789999988765433 4689999999999999987663
No 58
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=90.57 E-value=0.52 Score=52.15 Aligned_cols=70 Identities=14% Similarity=0.207 Sum_probs=51.7
Q ss_pred hHHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHHhc
Q 012378 193 NPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 265 (465)
Q Consensus 193 ~~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~--~adl~I~g~~devL~~L~~~L~ 265 (465)
..+...+++|||+|+||+.+.=.... +...... .. +|-|+.++....+ ..++.|.||+.++|.+|.+.+.
T Consensus 258 ~~a~~~~~~aDlll~vG~rf~~~~~~-~~~f~~~-~~-ii~iDidp~ei~k~~~~~~~i~gD~~~~l~~L~~~l~ 329 (550)
T COG0028 258 KAANEALEEADLLLAVGARFDDRVTG-YSGFAPP-AA-IIHIDIDPAEIGKNYPVDVPIVGDAKATLEALLEELK 329 (550)
T ss_pred HHHHHHhhcCCEEEEecCCCcccccc-hhhhCCc-CC-EEEEeCChHHhCCCCCCCeeEeccHHHHHHHHHHhhh
Confidence 35667788999999999998744433 2112222 22 8889988876654 5799999999999999998764
No 59
>PRK08611 pyruvate oxidase; Provisional
Probab=90.49 E-value=0.56 Score=51.85 Aligned_cols=65 Identities=17% Similarity=0.241 Sum_probs=48.3
Q ss_pred HHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHHhc
Q 012378 194 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 265 (465)
Q Consensus 194 ~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~--~adl~I~g~~devL~~L~~~L~ 265 (465)
.+.+.+++|||+|+||+++..... + ....++|.||.++..... ..++.|.+|+..+|..|.+.+.
T Consensus 260 ~a~~~l~~aDlvl~iG~~~~~~~~--~-----~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~ 326 (576)
T PRK08611 260 PAYEAMQEADLLIMVGTNYPYVDY--L-----PKKAKAIQIDTDPANIGKRYPVNVGLVGDAKKALHQLTENIK 326 (576)
T ss_pred HHHHHHHhCCEEEEeCCCCCcccc--C-----CCCCcEEEEeCCHHHcCCccCCCeeEecCHHHHHHHHHHhcc
Confidence 355678899999999998743221 1 123689999988765543 4689999999999999987664
No 60
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=90.43 E-value=0.54 Score=51.94 Aligned_cols=70 Identities=29% Similarity=0.288 Sum_probs=50.2
Q ss_pred HHHHHhccCCEEEEEccCCCcc---ccCcccHHHhcCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHHhc
Q 012378 194 PAEKHCKIADVVLCLGTSLQIT---PACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 265 (465)
Q Consensus 194 ~A~~~~~~aDLlLvlGTSL~V~---Pa~~Lp~~a~~~Ga~lViINl~~t~~d~--~adl~I~g~~devL~~L~~~L~ 265 (465)
.+.+.+++|||+|+||+.+.-. |-... .....++++|.||.++..... ..++.|.+|+..+|+.|++.|.
T Consensus 255 ~~~~~l~~aDlil~lG~~~~~~~~~~~~~~--~~~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 329 (579)
T TIGR03457 255 AAMKLISDADVVLALGTRLGPFGTLPQYGI--DYWPKNAKIIQVDANAKMIGLVKKVTVGICGDAKAAAAEILQRLA 329 (579)
T ss_pred HHHHHHHhCCEEEEECCCCccccccccccc--ccCCCCCeEEEEeCCHHHhCCCCCCCeeEecCHHHHHHHHHHhhh
Confidence 4566788999999999988632 21111 112246789999988755433 4689999999999999988774
No 61
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=90.35 E-value=0.59 Score=51.89 Aligned_cols=67 Identities=18% Similarity=0.301 Sum_probs=49.2
Q ss_pred HHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHHhc
Q 012378 194 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 265 (465)
Q Consensus 194 ~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~--~adl~I~g~~devL~~L~~~L~ 265 (465)
.+.+.+++|||+|+|||++..... ++ ...++++|.||.++..... ..++.|.+|+..+|+.|.+.|.
T Consensus 265 ~a~~~~~~aDlvl~lG~~~~~~~~--~~---~~~~~~~i~Id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 333 (597)
T PRK08273 265 PSYELMRECDTLLMVGSSFPYSEF--LP---KEGQARGVQIDIDGRMLGLRYPMEVNLVGDAAETLRALLPLLE 333 (597)
T ss_pred HHHHHHHhCCEEEEeCCCCCHHhc--CC---CCCCCeEEEEeCCHHHcCCCCCCCceEecCHHHHHHHHHHhhh
Confidence 456678899999999999742211 11 1235789999988765543 4678999999999999988764
No 62
>PRK08617 acetolactate synthase; Reviewed
Probab=90.00 E-value=0.65 Score=50.86 Aligned_cols=68 Identities=16% Similarity=0.211 Sum_probs=49.7
Q ss_pred HHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHHhc
Q 012378 195 AEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 265 (465)
Q Consensus 195 A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~--~adl~I~g~~devL~~L~~~L~ 265 (465)
+.+.+++|||+|++|+++.-+....+. ...+.++|.||.++...+. ..++.|.+|+..+|+.|.+.+.
T Consensus 262 ~~~~~~~aDlvl~lG~~~~~~~~~~~~---~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 331 (552)
T PRK08617 262 GDELLKKADLVITIGYDPIEYEPRNWN---SEGDATIIHIDVLPAEIDNYYQPERELIGDIAATLDLLAEKLD 331 (552)
T ss_pred HHHHHHhCCEEEEecCccccccccccc---cCCCCcEEEEeCChHHhCCccCCCeEEeCCHHHHHHHHHHhhh
Confidence 456788999999999987543322221 1234689999998876554 4689999999999999987654
No 63
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=89.51 E-value=0.72 Score=51.06 Aligned_cols=64 Identities=19% Similarity=0.354 Sum_probs=48.7
Q ss_pred HHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHHhc
Q 012378 194 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 265 (465)
Q Consensus 194 ~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~--~adl~I~g~~devL~~L~~~L~ 265 (465)
.+.+.+++|||+|+||+++... .+ ....++|.||.++..... ..++.|.+|+..+|+.|.+.|.
T Consensus 258 ~~~~~l~~aDlvl~lG~~~~~~---~~-----~~~~~~I~vd~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~L~ 323 (578)
T PRK06546 258 AAHEAMHEADLLILLGTDFPYD---QF-----LPDVRTAQVDIDPEHLGRRTRVDLAVHGDVAETIRALLPLVK 323 (578)
T ss_pred HHHHHHHhCCEEEEEcCCCChh---hc-----CCCCcEEEEeCCHHHhCCCCCCCeEEEcCHHHHHHHHHHhhc
Confidence 4556788999999999987532 11 123579999988876543 4689999999999999988774
No 64
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=89.50 E-value=0.77 Score=50.62 Aligned_cols=70 Identities=10% Similarity=0.144 Sum_probs=49.8
Q ss_pred HHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHHhc
Q 012378 194 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 265 (465)
Q Consensus 194 ~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~--~adl~I~g~~devL~~L~~~L~ 265 (465)
.+.+.+.+|||+|++|+++.......+. ......++|.||.++..... ..++.|.+|+..+|+.|.+.++
T Consensus 274 ~~~~~l~~aDlvL~lG~~~~~~~~~~~~--~~~~~~~~i~id~d~~~ig~~~~~~~~i~~D~~~~l~~L~~~~~ 345 (571)
T PRK07710 274 TANMALYECDLLINIGARFDDRVTGNLA--YFAKEATVAHIDIDPAEIGKNVPTEIPIVADAKQALQVLLQQEG 345 (571)
T ss_pred HHHHHHHhCCEEEEeCCCCCccccCchh--hcCCCCeEEEEECCHHHhcCcCCCCeEEecCHHHHHHHHHHhhh
Confidence 3556778999999999998653322221 11235678889888764432 4689999999999999987664
No 65
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=89.05 E-value=0.69 Score=49.22 Aligned_cols=67 Identities=13% Similarity=0.095 Sum_probs=49.0
Q ss_pred HHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHHhc
Q 012378 195 AEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 265 (465)
Q Consensus 195 A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~--~adl~I~g~~devL~~L~~~L~ 265 (465)
+.+.+ ++||+|++|+.+.-.....+ ....+.++|.|+.++...+. ..++.|.||+.++++.|.+.+.
T Consensus 269 ~~~~~-~aDlvl~lG~~~~~~~~~~~---~~~~~~~~i~vd~d~~~~~~~~~~~~~i~~D~~~~l~~l~~~~~ 337 (432)
T TIGR00173 269 LREEL-QPDLVIRFGGPPVSKRLRQW---LARQPAEYWVVDPDPGWLDPSHHATTRLEASPAEFAEALAGLLK 337 (432)
T ss_pred hhhhC-CCCEEEEeCCCcchhHHHHH---HhCCCCcEEEECCCCCccCCCCCceEEEEECHHHHHHHhhhccC
Confidence 33446 99999999999865443332 11235789999998876654 4589999999999998877663
No 66
>PRK07064 hypothetical protein; Provisional
Probab=88.75 E-value=0.84 Score=49.81 Aligned_cols=69 Identities=22% Similarity=0.309 Sum_probs=50.1
Q ss_pred HHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCC--CcccEEEECcHHHHHHHHHHHhc
Q 012378 194 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKD--KKASLVIHGFVDKVVAGVMDLLN 265 (465)
Q Consensus 194 ~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d--~~adl~I~g~~devL~~L~~~L~ 265 (465)
.+.+.+++|||+|+||+.+.-.....+. .....++|.||.++.... ...++.|.+|+..+|+.|.+.+.
T Consensus 257 ~~~~~~~~aDlvl~iG~~~~~~~~~~~~---~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 327 (544)
T PRK07064 257 AVEALYKTCDLLLVVGSRLRGNETLKYS---LALPRPLIRVDADAAADGRGYPNDLFVHGDAARVLARLADRLE 327 (544)
T ss_pred HHHHHHHhCCEEEEecCCCCcccccccc---cCCCCceEEEeCCHHHhCCcCCCCceEecCHHHHHHHHHHhhh
Confidence 3566788999999999998755443321 112347889988865443 35689999999999999987664
No 67
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=87.94 E-value=0.96 Score=50.00 Aligned_cols=68 Identities=15% Similarity=0.288 Sum_probs=47.4
Q ss_pred HHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHHhc
Q 012378 194 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 265 (465)
Q Consensus 194 ~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~--~adl~I~g~~devL~~L~~~L~ 265 (465)
.+.+.+++|||+|++||++..... ... ...+..+|.||.++..... ..++.|.||+..+|..|...|.
T Consensus 257 ~~~~~l~~aDlvl~vG~~~~~~~~---~~~-~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 326 (575)
T TIGR02720 257 PANEALFQADLVLFVGNNYPFAEV---SKA-FKNTKYFIQIDIDPAKLGKRHHTDIAVLADAKKALAAILAQVE 326 (575)
T ss_pred HHHHHHHhCCEEEEeCCCCCcccc---ccc-cCCCceEEEEeCCHHHhCCCCCCCeEEecCHHHHHHHHHHhcc
Confidence 345678899999999998743221 111 1233455888887655433 4679999999999999987764
No 68
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=87.91 E-value=1 Score=49.64 Aligned_cols=65 Identities=20% Similarity=0.309 Sum_probs=48.0
Q ss_pred HHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHHhc
Q 012378 194 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 265 (465)
Q Consensus 194 ~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~--~adl~I~g~~devL~~L~~~L~ 265 (465)
.+.+.+++|||+|+||+++... .+ .....++|.||.++..... ..++.|.+|+.+++..|.+.+.
T Consensus 258 ~~~~~~~~aDlvl~lG~~~~~~---~~----~~~~~~ii~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 324 (574)
T PRK09124 258 SGYHAMMNCDTLLMLGTDFPYR---QF----YPTDAKIIQIDINPGSLGRRSPVDLGLVGDVKATLAALLPLLE 324 (574)
T ss_pred HHHHHHHhCCEEEEECCCCCcc---cc----cCCCCcEEEeeCCHHHhCCCCCCCeEEEccHHHHHHHHHHhhh
Confidence 3456788999999999987532 11 1234689999988766543 4689999999999999877653
No 69
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=87.26 E-value=0.97 Score=49.15 Aligned_cols=82 Identities=23% Similarity=0.231 Sum_probs=57.1
Q ss_pred CCCCChhhhhHHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCCC---cccEEEECcHHHHHHHH
Q 012378 184 EDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK---KASLVIHGFVDKVVAGV 260 (465)
Q Consensus 184 GE~lp~~~~~~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~---~adl~I~g~~devL~~L 260 (465)
+|..|-..-..-..++++||++|++|+-|+----..+|. ......++|.||..+..+.. ..++.|.||+..++..|
T Consensus 259 ~d~hPl~v~~aRS~ALk~ADvvll~GarlnwiLhfG~~P-k~~kd~KfIqvd~n~Eel~~n~~k~~v~i~gDig~~~~~L 337 (571)
T KOG1185|consen 259 PDNHPLNVSSARSLALKKADVVLLAGARLNWILHFGLPP-KWSKDVKFIQVDINPEELGNNFVKPDVAIQGDIGLFVLQL 337 (571)
T ss_pred CCCCchhhhHHHHHHHhhCCEEEEecceeeEEEecCCCC-ccCCCceEEEEeCCHHHHhcccCCCCceeeecHHHHHHHH
Confidence 455555433333457899999999999877422222221 12456788888877655433 57899999999999999
Q ss_pred HHHhcc
Q 012378 261 MDLLNL 266 (465)
Q Consensus 261 ~~~L~l 266 (465)
.+.|+-
T Consensus 338 ~e~l~~ 343 (571)
T KOG1185|consen 338 VEELQD 343 (571)
T ss_pred HHHhcC
Confidence 999874
No 70
>PLN02573 pyruvate decarboxylase
Probab=84.24 E-value=1.5 Score=48.57 Aligned_cols=69 Identities=13% Similarity=0.142 Sum_probs=46.6
Q ss_pred HHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCCCcccEEEECcHHHHHHHHHHHhc
Q 012378 194 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVVAGVMDLLN 265 (465)
Q Consensus 194 ~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~~adl~I~g~~devL~~L~~~L~ 265 (465)
.+.+.+++|||+|+||++|.......+.. ...+.++|.||.++.......++.+. ++..++..|.+.|.
T Consensus 284 ~~~~~~~~aDlvl~lG~~l~~~~~~~~~~--~~~~~~~I~id~d~~~i~~~~~~~~~-~~~~~l~~L~~~l~ 352 (578)
T PLN02573 284 FCAEIVESADAYLFAGPIFNDYSSVGYSL--LLKKEKAIIVQPDRVTIGNGPAFGCV-LMKDFLEALAKRVK 352 (578)
T ss_pred HHHHHHHhCCEEEEECCccCCcccccccc--cCCCCcEEEEeCCEEEECCcceECCc-CHHHHHHHHHHHhh
Confidence 35567789999999999986544322211 12457899999888765443344444 68888888887764
No 71
>KOG3149 consensus Transcription initiation factor IIF, auxiliary subunit [Transcription]
Probab=84.18 E-value=2.6 Score=42.20 Aligned_cols=79 Identities=13% Similarity=0.240 Sum_probs=60.5
Q ss_pred ccceeeEEEEeeecCCCCCcccceEeEeecccccccccccccCCCeEEEEecccccceEEEEEEeecCCCCCCccccccc
Q 012378 289 KKFVNWTLRITSVHGQTAQLPFIKSVEVSFSDRQKYKEASLDKQPFQLKRRTVINETFDIKLKLNFSDGCGCPCTQINIP 368 (465)
Q Consensus 289 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~ 368 (465)
...+.|.|-+.+..... ...|++.|..+.-+.-.-+-+++.++||.++ |++ -+.|+|.++.-|.+.-++..+.+.|.
T Consensus 34 ~~th~w~v~v~~~~~ed-~~~~V~KV~f~LH~sf~~P~Rvv~~pPf~i~-EtG-wgeF~i~i~i~f~d~~~~~~v~~~~~ 110 (249)
T KOG3149|consen 34 GFTHIWEVYVRGPGKED-ISAFVDKVVFKLHESFPNPRRVVESPPFEIT-ETG-WGEFEIQIEIFFTDDANEKKVTLYHD 110 (249)
T ss_pred ccceeeEEEecCcCccc-cceeeeeeeeecccccccccccccCCCceEE-eec-cccceEEEEEEeccCCCCceeeeeee
Confidence 44577998877665543 7789999988654433334578999999999 333 48999999999999999999888876
Q ss_pred cc
Q 012378 369 FD 370 (465)
Q Consensus 369 ~~ 370 (465)
+-
T Consensus 111 l~ 112 (249)
T KOG3149|consen 111 LK 112 (249)
T ss_pred EE
Confidence 54
No 72
>PLN00022 electron transfer flavoprotein subunit alpha; Provisional
Probab=83.69 E-value=2 Score=45.18 Aligned_cols=59 Identities=17% Similarity=0.211 Sum_probs=47.7
Q ss_pred CCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCC-CCCCcccEEEECcHHHHHHHHHHHhc
Q 012378 202 ADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKT-PKDKKASLVIHGFVDKVVAGVMDLLN 265 (465)
Q Consensus 202 aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t-~~d~~adl~I~g~~devL~~L~~~L~ 265 (465)
.+|.|.+|.|.++.-.+.+ +.-..+|-||.++. |.-..+|+.|-||+-++++.|.+.+.
T Consensus 294 P~lYIA~GISGAiQH~~Gm-----~~s~~IVAIN~D~~APIF~~ADygIVgD~~evlP~Lie~lk 353 (356)
T PLN00022 294 PELYIAVGISGAIQHLAGM-----KDSKVIVAINKDADAPIFQVADYGLVADLFEAVPELLEKLP 353 (356)
T ss_pred CcEEEEEecchHHHHHhhc-----ccCCEEEEECCCCCCCchhhcCeeEeeeHHHHHHHHHHHHH
Confidence 5799999999888665554 22345788999975 56678999999999999999999875
No 73
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=83.55 E-value=1.9 Score=47.10 Aligned_cols=72 Identities=15% Similarity=0.110 Sum_probs=48.8
Q ss_pred hHHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCCC-cccEEEECcHHHHHHHHHHHhc
Q 012378 193 NPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK-KASLVIHGFVDKVVAGVMDLLN 265 (465)
Q Consensus 193 ~~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~-~adl~I~g~~devL~~L~~~L~ 265 (465)
..+.+.+++|||+|.+|+++.-....... .....+.++|.||.++..... ..++.|.+|+..+++.|.+.|.
T Consensus 264 ~~~~~~l~~aDlvl~lG~~~~~~~~~~~~-~~~~~~~~~i~id~d~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 336 (530)
T PRK07092 264 EKISALLDGHDLVLVIGAPVFTYHVEGPG-PHLPEGAELVQLTDDPGEAAWAPMGDAIVGDIRLALRDLLALLP 336 (530)
T ss_pred HHHHHHHhhCCEEEEECCcccccccCCcc-ccCCCCCeEEEEeCChHHhcCCCCCCcccCCHHHHHHHHHHhhc
Confidence 34556788999999999874322111110 011235688899888754322 3578899999999999998875
No 74
>PRK03363 fixB putative electron transfer flavoprotein FixB; Provisional
Probab=82.88 E-value=2.4 Score=43.88 Aligned_cols=59 Identities=24% Similarity=0.253 Sum_probs=46.7
Q ss_pred CCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCC-CCCCcccEEEECcHHHHHHHHHHHhc
Q 012378 202 ADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKT-PKDKKASLVIHGFVDKVVAGVMDLLN 265 (465)
Q Consensus 202 aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t-~~d~~adl~I~g~~devL~~L~~~L~ 265 (465)
.+|.|.+|.|.++.-...+ +.-..+|-||.++. |.-+.+|+.|-||.-+++|.|.+.+.
T Consensus 253 P~lYiA~GISGaiQH~~Gm-----~~s~~IVAIN~Dp~APIF~~ADygiVgD~~eilP~L~e~l~ 312 (313)
T PRK03363 253 PELYLAVGISGQIQHMVGA-----NASQTIFAINKDKNAPIFQYADYGIVGDAVKILPALTAALA 312 (313)
T ss_pred ccEEEEEccccHHHHHhhc-----ccCCEEEEEcCCCCCCchhhCCeeEeeeHHHHHHHHHHHhh
Confidence 4799999999887665544 22345778999975 56678999999999999999998763
No 75
>PRK11916 electron transfer flavoprotein subunit YdiR; Provisional
Probab=82.73 E-value=2.4 Score=43.90 Aligned_cols=59 Identities=32% Similarity=0.344 Sum_probs=46.6
Q ss_pred CCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCC-CCCCcccEEEECcHHHHHHHHHHHhc
Q 012378 202 ADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKT-PKDKKASLVIHGFVDKVVAGVMDLLN 265 (465)
Q Consensus 202 aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t-~~d~~adl~I~g~~devL~~L~~~L~ 265 (465)
.+|.|.+|.|.++.-...+ +.-..+|-||.++. |.-+.+|+.|-||.-++++.|.+.|.
T Consensus 252 P~lYiA~GISGAiQH~aGm-----~~s~~IVAIN~Dp~APIF~~ADygiVgD~~~vlP~L~e~l~ 311 (312)
T PRK11916 252 SDLYLTLGISGQIQHMVGG-----NGAKVIVAINKDKNAPIFNYADYGLVGDIYKVVPALISQLS 311 (312)
T ss_pred ccEEEEeccccHHHHHhhc-----ccCCEEEEECCCCCCCchhhCCeeEeeeHHHHHHHHHHHhh
Confidence 4689999999887655544 22345788999975 56678999999999999999998763
No 76
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=82.12 E-value=2.8 Score=46.04 Aligned_cols=59 Identities=22% Similarity=0.300 Sum_probs=43.8
Q ss_pred HHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHH
Q 012378 194 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAG 259 (465)
Q Consensus 194 ~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~--~adl~I~g~~devL~~ 259 (465)
.+.+.+++|||+|++|+++.... + ...+.++|.||.++..... ..++.|.+|+..+|..
T Consensus 252 ~~~~~l~~aDlvl~lG~~~~~~~---~----~~~~~~ii~id~d~~~~~~~~~~~~~i~~d~~~~l~~ 312 (549)
T PRK06457 252 PSIEAMDKADLLIMLGTSFPYVN---F----LNKSAKVIQVDIDNSNIGKRLDVDLSYPIPVAEFLNI 312 (549)
T ss_pred HHHHHHHhCCEEEEECCCCChhh---c----CCCCCcEEEEeCCHHHhCCCCCCCeEEecCHHHHHHH
Confidence 45567889999999999975332 1 1235689999988766543 5689999999999954
No 77
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=81.10 E-value=1.4 Score=48.35 Aligned_cols=69 Identities=12% Similarity=0.151 Sum_probs=45.8
Q ss_pred HHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHHhc
Q 012378 194 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 265 (465)
Q Consensus 194 ~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~--~adl~I~g~~devL~~L~~~L~ 265 (465)
.+.+.+++|||+|+||++|.......+... . ...++|-||.++..... ..++.| +|+..+|.+|.+.++
T Consensus 265 ~~~~~~~~aDlvl~lG~~l~~~~~~~~~~~-~-~~~~~I~id~~~~~~~~~~~~~~~i-~D~~~~l~~l~~~l~ 335 (539)
T TIGR03393 265 AVKEAIEGADAVICVGVRFTDTITAGFTHQ-L-TPEQTIDVQPHAARVGNVWFTGIPM-NDAIETLVELCEHAG 335 (539)
T ss_pred HHHHHHhhCCEEEEECCcccccccceeecc-C-CcccEEEEcCCeEEECceEeCCcCH-HHHHHHHHHHhhhcc
Confidence 456778899999999999865333222111 1 12468888887654432 345556 899999999988763
No 78
>cd02750 MopB_Nitrate-R-NarG-like Respiratory nitrate reductase A (NarGHI), alpha chain (NarG) and related proteins. Under anaerobic conditions in the presence of nitrate, E. coli synthesizes the cytoplasmic membrane-bound quinol-nitrate oxidoreductase (NarGHI), which reduces nitrate to nitrite and forms part of a redox loop generating a proton-motive force. Found in prokaryotes and some archaea, NarGHI usually functions as a heterotrimer. The alpha chain contains the molybdenum cofactor-containing Mo-bisMGD catalytic subunit. Members of the MopB_Nitrate-R-NarG-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=79.73 E-value=3.5 Score=44.25 Aligned_cols=55 Identities=22% Similarity=0.337 Sum_probs=40.8
Q ss_pred HHHhccCCEEEEEccCCCcc-ccC-cccHHHhcCCCeEEEECCCCCCCCCcccEEEE
Q 012378 196 EKHCKIADVVLCLGTSLQIT-PAC-NLPLKCLRGGGKIVIVNLQKTPKDKKASLVIH 250 (465)
Q Consensus 196 ~~~~~~aDLlLvlGTSL~V~-Pa~-~Lp~~a~~~Ga~lViINl~~t~~d~~adl~I~ 250 (465)
...+.+||++|++|+...+. |.. .....++++|+++|.|++..+.....+|.+|.
T Consensus 165 ~~d~~~ad~il~~G~N~~~~~~~~~~~l~~ar~~GaklividPr~s~ta~~Ad~~l~ 221 (461)
T cd02750 165 SADWYNADYIIMWGSNVPVTRTPDAHFLTEARYNGAKVVVVSPDYSPSAKHADLWVP 221 (461)
T ss_pred hhHHhcCcEEEEECCChHHccCchHHHHHHHHHCCCEEEEEcCCCCcchhhcCEEec
Confidence 34568899999999875542 211 22245678899999999999998888887764
No 79
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=79.49 E-value=1 Score=31.84 Aligned_cols=34 Identities=21% Similarity=0.572 Sum_probs=21.3
Q ss_pred ccccCCCCCCcccchhhhhhhccccCCCCCCCCCCCCccc
Q 012378 138 FMEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLR 177 (465)
Q Consensus 138 ~~~~C~~C~~~y~rd~~~~~i~~~~~~P~C~~p~CGg~Lr 177 (465)
+..+|..||+.|...... .. .....| |.||+.++
T Consensus 4 Y~y~C~~Cg~~fe~~~~~---~~-~~~~~C--P~Cg~~~~ 37 (41)
T smart00834 4 YEYRCEDCGHTFEVLQKI---SD-DPLATC--PECGGDVR 37 (41)
T ss_pred EEEEcCCCCCEEEEEEec---CC-CCCCCC--CCCCCcce
Confidence 456899999977432211 11 335679 89998654
No 80
>cd02759 MopB_Acetylene-hydratase The MopB_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins. The acetylene hydratase of Pelobacter acetylenicus is a tungsten iron-sulfur protein involved in the fermentation of acetylene to ethanol and acetate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=79.01 E-value=3 Score=44.88 Aligned_cols=54 Identities=13% Similarity=0.192 Sum_probs=40.6
Q ss_pred HHhccCCEEEEEccCCCcc-c--cCcccHHHhcCCCeEEEECCCCCCCCCcccEEEE
Q 012378 197 KHCKIADVVLCLGTSLQIT-P--ACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIH 250 (465)
Q Consensus 197 ~~~~~aDLlLvlGTSL~V~-P--a~~Lp~~a~~~Ga~lViINl~~t~~d~~adl~I~ 250 (465)
..+.+||++|++|+..... | .......++++|+++|.|++..+.....+|.+|.
T Consensus 156 ~d~~~ad~Il~~G~n~~~~~~~~~~~~~~~ar~~g~klividpr~s~ta~~Ad~~l~ 212 (477)
T cd02759 156 PDWENPECIVLWGKNPLNSNLDLQGHWLVAAMKRGAKLIVVDPRLTWLAARADLWLP 212 (477)
T ss_pred hhhhcCCEEEEEccChhhhCcHHHHHHHHHHHHCCCEEEEECCCCChhhHhhCeeec
Confidence 3567999999999976543 3 1222245667899999999999988888888774
No 81
>COG2025 FixB Electron transfer flavoprotein, alpha subunit [Energy production and conversion]
Probab=78.32 E-value=4.5 Score=41.90 Aligned_cols=60 Identities=23% Similarity=0.293 Sum_probs=48.3
Q ss_pred cCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCC-CCCCcccEEEECcHHHHHHHHHHHhc
Q 012378 201 IADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKT-PKDKKASLVIHGFVDKVVAGVMDLLN 265 (465)
Q Consensus 201 ~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t-~~d~~adl~I~g~~devL~~L~~~L~ 265 (465)
..||-|.+|-|.++.-.+.+ +.-..+|-||.++. |.-+.+|+-|-||.-+++|.|.+.|+
T Consensus 251 ~P~LYIA~GISGAiQHlaGm-----~~Sk~IVAINkD~nAPIF~~ADyGiVgDl~~ivP~Lie~l~ 311 (313)
T COG2025 251 APKLYIALGISGAIQHLAGM-----KDSKVIVAINKDPNAPIFQVADYGIVGDLFKIVPALIEALK 311 (313)
T ss_pred cccEEEEEecccHHHHHhhc-----ccCcEEEEEcCCCCCCccccCCeeeeeeHHHHHHHHHHHHh
Confidence 35799999999988766554 22335777999975 56678999999999999999999885
No 82
>cd02766 MopB_3 The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=78.05 E-value=2.1 Score=46.52 Aligned_cols=55 Identities=18% Similarity=0.281 Sum_probs=42.3
Q ss_pred HHHhccCCEEEEEccCCCc-cc-cCcccHHHhcCCCeEEEECCCCCCCCCcccEEEE
Q 012378 196 EKHCKIADVVLCLGTSLQI-TP-ACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIH 250 (465)
Q Consensus 196 ~~~~~~aDLlLvlGTSL~V-~P-a~~Lp~~a~~~Ga~lViINl~~t~~d~~adl~I~ 250 (465)
.+.+.++|++|++|+.... .| .......++++|+++|.|++..+.....+|++|.
T Consensus 152 ~~d~~~ad~il~~G~Np~~s~p~~~~~~~~a~~~GaklivvDPr~t~ta~~Ad~~l~ 208 (501)
T cd02766 152 PEDMVNADLIVIWGINPAATNIHLMRIIQEARKRGAKVVVIDPYRTATAARADLHIQ 208 (501)
T ss_pred HHHHhcCCEEEEECCChhhhchhHHHHHHHHHHCCCEEEEECCCCCccHHHhCeeec
Confidence 4567899999999987654 33 2233345778999999999999998888887764
No 83
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=77.90 E-value=5.1 Score=43.68 Aligned_cols=71 Identities=21% Similarity=0.181 Sum_probs=52.9
Q ss_pred HHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCCCcccEEEECcHHHHHHHHHHHhc
Q 012378 194 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVVAGVMDLLN 265 (465)
Q Consensus 194 ~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~~adl~I~g~~devL~~L~~~L~ 265 (465)
+|-..+.+|||+|-|||-++=.-..+. ......+.+++.||-++-..-+...+-+-+|+...|.+|...|+
T Consensus 288 AAN~~A~~ADlVigiGTR~~DFTTgS~-alF~~~~~k~l~lNV~~~da~K~~a~~lvaDAr~~L~~L~~~L~ 358 (617)
T COG3962 288 AANRAAEEADLVIGIGTRLQDFTTGSK-ALFKNPGVKFLNLNVQPFDAYKHDALPLVADARAGLEALSEALG 358 (617)
T ss_pred HHHhhhhhcCEEEEecccccccccccH-HHhcCCCceEEEeecccccccccccceehhHHHHHHHHHHHHhc
Confidence 455677899999999998875433332 12234677899999887666566678888999999999988774
No 84
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=77.66 E-value=4.1 Score=44.82 Aligned_cols=62 Identities=13% Similarity=0.067 Sum_probs=43.3
Q ss_pred HHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHH
Q 012378 195 AEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAG 259 (465)
Q Consensus 195 A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~--~adl~I~g~~devL~~ 259 (465)
+.+.+++||++|+||+.+.-.....+ ......++|.||.++...+. ..++.|.+++.++|..
T Consensus 280 ~~~~l~~aD~vl~vG~~l~~~~~~~~---~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~ 343 (568)
T PRK07449 280 AAEELLQPDIVIQFGSPPTSKRLLQW---LADCEPEYWVVDPGPGRLDPAHHATRRLTASVATWLEA 343 (568)
T ss_pred hhhhcCCCCEEEEeCCCCCchhHHHH---HhcCCCCEEEECCCCCcCCCCCCceEEEEEcHHHHHHh
Confidence 45677899999999999853322111 11223489999988876654 4678999999888775
No 85
>cd02765 MopB_4 The MopB_4 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=75.22 E-value=3.6 Score=45.51 Aligned_cols=56 Identities=18% Similarity=0.175 Sum_probs=42.0
Q ss_pred HHHhccCCEEEEEccCCCcc-c-cCcccHHHhcCCCeEEEECCCCCCCCCcccEEEEC
Q 012378 196 EKHCKIADVVLCLGTSLQIT-P-ACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHG 251 (465)
Q Consensus 196 ~~~~~~aDLlLvlGTSL~V~-P-a~~Lp~~a~~~Ga~lViINl~~t~~d~~adl~I~g 251 (465)
...+.+||++|++|+..... | ..+....++++|+++|.|++..+.....+|.+|.-
T Consensus 154 ~~D~~~ad~il~~G~Np~~s~~~~~~~~~~a~~~GakliviDPr~s~ta~~Ad~~l~i 211 (567)
T cd02765 154 ITDWVNAKTIIIWGSNILETQFQDAEFFLDARENGAKIVVIDPVYSTTAAKADQWVPI 211 (567)
T ss_pred HhHHhcCcEEEEECCChHHccchhHHHHHHHHHcCCeEEEECCCCCcchhhcCEEecc
Confidence 34567899999999986543 3 22333457789999999999999988888877643
No 86
>cd02753 MopB_Formate-Dh-H Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. It is a component of the anaerobic formate hydrogen lyase complex. The E. coli formate dehydrogenase H (Fdh-H) is a monomer composed of a single polypeptide chain with a Mo active site region and a [4Fe-4S] center. Members of the MopB_Formate-Dh-H CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=74.53 E-value=4.9 Score=43.44 Aligned_cols=54 Identities=22% Similarity=0.388 Sum_probs=40.2
Q ss_pred HHhccCCEEEEEccCCCcc-cc-CcccHHHhcCCCeEEEECCCCCCCCCcccEEEE
Q 012378 197 KHCKIADVVLCLGTSLQIT-PA-CNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIH 250 (465)
Q Consensus 197 ~~~~~aDLlLvlGTSL~V~-Pa-~~Lp~~a~~~Ga~lViINl~~t~~d~~adl~I~ 250 (465)
..+.++|++|++|+..... |. ......++++|+++|.|++..+.....+|.+|.
T Consensus 152 ~d~~~ad~il~~G~n~~~~~~~~~~~i~~a~~~G~k~i~Idp~~s~ta~~Ad~~l~ 207 (512)
T cd02753 152 ADIEEADVILVIGSNTTEAHPVIARRIKRAKRNGAKLIVADPRRTELARFADLHLQ 207 (512)
T ss_pred HHHHhCCEEEEECCChhhhhHHHHHHHHHHHHCCCeEEEEcCCCccchHhhCeeeC
Confidence 4467899999999876442 22 122245678899999999999888778888875
No 87
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=73.52 E-value=1.5 Score=31.86 Aligned_cols=34 Identities=24% Similarity=0.581 Sum_probs=21.2
Q ss_pred CccccCCCCCCcccchhhhhhhccccCCCCCCCCCCCC-cc
Q 012378 137 SFMEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGA-KL 176 (465)
Q Consensus 137 l~~~~C~~C~~~y~rd~~~~~i~~~~~~P~C~~p~CGg-~L 176 (465)
++..+|..||..+..-. .+.. .....| |.||+ .+
T Consensus 3 ~Yey~C~~Cg~~fe~~~---~~~~-~~~~~C--P~Cg~~~~ 37 (42)
T PF09723_consen 3 IYEYRCEECGHEFEVLQ---SISE-DDPVPC--PECGSTEV 37 (42)
T ss_pred CEEEEeCCCCCEEEEEE---EcCC-CCCCcC--CCCCCCce
Confidence 34578999998763221 1222 345678 89998 44
No 88
>cd02768 MopB_NADH-Q-OR-NuoG2 MopB_NADH-Q-OR-NuoG2: The NuoG/Nad11/75-kDa subunit (second domain) of the NADH-quinone oxidoreductase (NADH-Q-OR)/respiratory complex I/NADH dehydrogenase-1 (NDH-1). The NADH-Q-OR is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The atomic structure of complex I is not known and the mechanisms of electron transfer and proton pumping are not established. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Escherichia coli, this subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the 'minimal' fun
Probab=72.06 E-value=7.3 Score=40.25 Aligned_cols=63 Identities=24% Similarity=0.261 Sum_probs=41.6
Q ss_pred HHhccCCEEEEEccCCCc-cccC-cccHHHhc-CCCeEEEECCCCCCCCCcccEEEECcHH-HHHHHHH
Q 012378 197 KHCKIADVVLCLGTSLQI-TPAC-NLPLKCLR-GGGKIVIVNLQKTPKDKKASLVIHGFVD-KVVAGVM 261 (465)
Q Consensus 197 ~~~~~aDLlLvlGTSL~V-~Pa~-~Lp~~a~~-~Ga~lViINl~~t~~d~~adl~I~g~~d-evL~~L~ 261 (465)
..+.++|++|++|+.... .|.. .....+.+ +|+++|.|++..+.. .+|.++.-... ..+..++
T Consensus 144 ~di~~ad~il~~G~n~~~~~p~~~~~~~~a~~~~g~kli~idp~~t~~--~ad~~~~~~pg~~~~~~l~ 210 (386)
T cd02768 144 AEIEEADAVLLIGSNLRKEAPLLNARLRKAVKKKGAKIAVIGPKDTDL--IADLTYPVSPLGASLATLL 210 (386)
T ss_pred HHHhhCCEEEEEcCCcchhchHHHHHHHHHHHcCCCeEEEECCCcccc--ccceEEEcCCchhHHHHHH
Confidence 456799999999997653 3322 22234434 599999999998887 67877765544 3333333
No 89
>cd02767 MopB_ydeP The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=71.41 E-value=6.9 Score=43.63 Aligned_cols=43 Identities=19% Similarity=0.412 Sum_probs=30.7
Q ss_pred HHhccCCEEEEEccCCCc-ccc-CcccHHHhcCCCeEEEECCCCC
Q 012378 197 KHCKIADVVLCLGTSLQI-TPA-CNLPLKCLRGGGKIVIVNLQKT 239 (465)
Q Consensus 197 ~~~~~aDLlLvlGTSL~V-~Pa-~~Lp~~a~~~Ga~lViINl~~t 239 (465)
+.+.+||++|++|+.... .|. ......++++|+++|.||+-.+
T Consensus 159 ~Di~~ad~Il~~G~Np~~~~p~~~~~l~~A~~rGakIIvIdP~~~ 203 (574)
T cd02767 159 EDFEHTDLIFFIGQNPGTNHPRMLHYLREAKKRGGKIIVINPLRE 203 (574)
T ss_pred HHHhcCCEEEEEcCChhhhcHHHHHHHHHHHHCCCEEEEECCCcc
Confidence 456789999999996433 332 1122457789999999999765
No 90
>PRK09444 pntB pyridine nucleotide transhydrogenase; Provisional
Probab=70.05 E-value=13 Score=40.31 Aligned_cols=87 Identities=17% Similarity=0.259 Sum_probs=58.2
Q ss_pred cCcEEeCCCCCChhh---hhHHHHHhccCCEEEEEccCCCccccCcc---------cHHHhcCCCeEEEECCCCCC----
Q 012378 177 RDTVLDWEDALPPKE---MNPAEKHCKIADVVLCLGTSLQITPACNL---------PLKCLRGGGKIVIVNLQKTP---- 240 (465)
Q Consensus 177 rP~VV~FGE~lp~~~---~~~A~~~~~~aDLlLvlGTSL~V~Pa~~L---------p~~a~~~Ga~lViINl~~t~---- 240 (465)
.-||++=+-.+|.+. +++.-..+.++|+.||+|..-.|.|+++= |-.-..+-..+|.+++.-.+
T Consensus 354 HMNVLLAEA~VPYd~v~eMdeIN~~F~~tDvalVIGANDvVNPaA~~dp~SpIyGMPvL~v~kAk~Viv~KRs~~~GyAG 433 (462)
T PRK09444 354 HMNVLLAEAKVPYDIVLEMDEINDDFADTDTVLVIGANDTVNPAAQEDPNSPIAGMPVLEVWKAQNVIVFKRSMNTGYAG 433 (462)
T ss_pred cceeEEeecCCCHHHHHhHHhhccccccCCEEEEecCccCCCcccccCCCCCcCCCceeehhhCCEEEEEeCCCCCCcCC
Confidence 457888777788763 44555678899999999999999887642 31111222345555554322
Q ss_pred CC-----CcccEEEECcHHHHHHHHHHH
Q 012378 241 KD-----KKASLVIHGFVDKVVAGVMDL 263 (465)
Q Consensus 241 ~d-----~~adl~I~g~~devL~~L~~~ 263 (465)
.+ ...+.-+-||+.+.+.++.+.
T Consensus 434 v~NpLF~~~nt~MlfGDAK~~~~~l~~~ 461 (462)
T PRK09444 434 VQNPLFFKENTQMLFGDAKASVDAILKA 461 (462)
T ss_pred CCCcceecCCceEEeccHHHHHHHHHHh
Confidence 12 246678899999999998765
No 91
>cd02754 MopB_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. Members of the MopB_Nitrate-R-NapA CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=69.99 E-value=6 Score=43.36 Aligned_cols=54 Identities=22% Similarity=0.355 Sum_probs=39.0
Q ss_pred HHhccCCEEEEEccCCCcc-cc-CcccHHHhcC--CCeEEEECCCCCCCCCcccEEEE
Q 012378 197 KHCKIADVVLCLGTSLQIT-PA-CNLPLKCLRG--GGKIVIVNLQKTPKDKKASLVIH 250 (465)
Q Consensus 197 ~~~~~aDLlLvlGTSL~V~-Pa-~~Lp~~a~~~--Ga~lViINl~~t~~d~~adl~I~ 250 (465)
..+.++|++|++|+..... |. ......++++ |+++|.|++..+.....+|.+|.
T Consensus 153 ~Di~~ad~Il~~G~n~~~s~~~~~~~~~~a~~~~~G~klividP~~t~ta~~Ad~~l~ 210 (565)
T cd02754 153 DDIEHADCFFLIGSNMAECHPILFRRLLDRKKANPGAKIIVVDPRRTRTADIADLHLP 210 (565)
T ss_pred HHHhhCCEEEEECCChhhhhhHHHHHHHHHHhcCCCCEEEEEcCCCCcchHHhCeeeC
Confidence 3467899999999976542 21 1222345556 99999999999988878887763
No 92
>cd02763 MopB_2 The MopB_2 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=69.09 E-value=7.9 Score=44.16 Aligned_cols=54 Identities=22% Similarity=0.139 Sum_probs=39.1
Q ss_pred HHhccCCEEEEEccCCCc--cccCcccHHHhcCCCeEEEECCCCCCCCCcccEEEE
Q 012378 197 KHCKIADVVLCLGTSLQI--TPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIH 250 (465)
Q Consensus 197 ~~~~~aDLlLvlGTSL~V--~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~~adl~I~ 250 (465)
..+.+||++|++|+.... .|.......++++|+++|.||+-.+.....+|.+|.
T Consensus 151 ~D~~~Ad~Ivl~G~n~~~~~~p~~~~i~~ak~~GaKlIvIDPr~t~ta~~AD~wl~ 206 (679)
T cd02763 151 PDLEHTKYFMMIGVAEDHHSNPFKIGIQKLKRRGGKFVAVNPVRTGYAAIADEWVP 206 (679)
T ss_pred hHHHhCCEEEEECCCCcccCchHHHHHHHHHhCCCcEEEEcCcCCcchHhhCeecC
Confidence 467789999999985332 232222234667899999999999888778887764
No 93
>TIGR03479 DMSO_red_II_alp DMSO reductase family type II enzyme, molybdopterin subunit. This model represents the molybdopterin subunit, typically called the alpha subunit, of various proteins that also contain an iron-sulfur subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase, ethylbenzene dehydrogenase, and an archaeal respiratory nitrate reductase. This alpha subunit has a twin-arginine translocation (TAT) signal for Sec-independent translocation across the plasma membrane.
Probab=68.98 E-value=4.1 Score=47.76 Aligned_cols=62 Identities=18% Similarity=0.256 Sum_probs=44.9
Q ss_pred HHHhccCCEEEEEccCCCcc--ccCcccHHHhcCCCeEEEECCCCCCCCCcccEEE--ECcHHHHH
Q 012378 196 EKHCKIADVVLCLGTSLQIT--PACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVI--HGFVDKVV 257 (465)
Q Consensus 196 ~~~~~~aDLlLvlGTSL~V~--Pa~~Lp~~a~~~Ga~lViINl~~t~~d~~adl~I--~g~~devL 257 (465)
...+.+||++|++|+..... +...+...++++|+++|.|++..+.....+|++| +-..|-.|
T Consensus 219 ~~D~~na~~Il~~G~Np~~t~~~~~~~l~~a~~~GaklVvIdPr~t~tA~~AD~wlpirPGTD~AL 284 (912)
T TIGR03479 219 SDDWFNADYIIMWGSNPSVTRIPDAHFLSEARYNGARVVSIAPDYNPSTIHADLWLPVRVGTDAAL 284 (912)
T ss_pred hhhhhcCcEEEEecCChHHcCCchHHHHHHHHhcCCeEEEECCCCChhhhhCCeecCCCCCcHHHH
Confidence 34567899999999876532 2334445677899999999999999888888765 33444444
No 94
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=68.92 E-value=5 Score=44.10 Aligned_cols=68 Identities=12% Similarity=-0.030 Sum_probs=42.3
Q ss_pred HHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHHh
Q 012378 194 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLL 264 (465)
Q Consensus 194 ~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~--~adl~I~g~~devL~~L~~~L 264 (465)
.+.+.+++|||+|+||+++.-...... .......++|.|+.++..... ..++.| +++.+.|..+++.+
T Consensus 261 ~~~~~l~~aDliL~iG~~l~~~~~~~~--~~~~~~~~~I~id~~~~~~~~~~~~~~~i-~d~~~~L~~l~~~~ 330 (535)
T TIGR03394 261 ELSRLVEESDGLLLLGVILSDTNFAVS--QRKIDLRRTIHAFDRAVTLGYHVYADIPL-AGLVDALLALLCGL 330 (535)
T ss_pred HHHHHHHhCCEEEEECCcccccccccc--cccCCCCcEEEEeCCEEEECCeeECCccH-HHHHHHHHHhhhcc
Confidence 456678899999999999865422110 011224678888876644333 345666 56777777776554
No 95
>TIGR01591 Fdh-alpha formate dehydrogenase, alpha subunit, archaeal-type. This model is well-defined, with only a single fragmentary sequence falling between trusted and noise. The alpha subunit of a version of nitrate reductase is closely related.
Probab=68.91 E-value=6 Score=44.28 Aligned_cols=54 Identities=26% Similarity=0.378 Sum_probs=39.5
Q ss_pred HHhccCCEEEEEccCCCc-ccc-CcccHHHhcCCCeEEEECCCCCCCCCcccEEEE
Q 012378 197 KHCKIADVVLCLGTSLQI-TPA-CNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIH 250 (465)
Q Consensus 197 ~~~~~aDLlLvlGTSL~V-~Pa-~~Lp~~a~~~Ga~lViINl~~t~~d~~adl~I~ 250 (465)
..+.+||++|++|+.... .|. ......++++|+++|.|++..+.....+|.+|.
T Consensus 151 ~di~~ad~il~~G~n~~~~~~~~~~~i~~a~~~G~klvvidp~~s~ta~~ad~~i~ 206 (671)
T TIGR01591 151 SEIENADLIVIIGYNPAESHPVVAQYLKNAKRNGAKIIVIDPRKTETAKIADLHIP 206 (671)
T ss_pred HHHHhCCEEEEECCChhhccCHHHHHHHHHHHCCCeEEEECCCCChhhHhhCcccC
Confidence 457789999999996543 232 122245677999999999999887777787663
No 96
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=68.53 E-value=4.7 Score=46.26 Aligned_cols=84 Identities=23% Similarity=0.290 Sum_probs=58.7
Q ss_pred CCCCCCCCCCCc----ccCcEEeCCCCCChhhhhHHHHHhccCCEEEEEccCCC-ccccCc-ccHHHhc-CCCeEEEECC
Q 012378 164 SRRCSDLKCGAK----LRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQ-ITPACN-LPLKCLR-GGGKIVIVNL 236 (465)
Q Consensus 164 ~P~C~~p~CGg~----LrP~VV~FGE~lp~~~~~~A~~~~~~aDLlLvlGTSL~-V~Pa~~-Lp~~a~~-~Ga~lViINl 236 (465)
+..|+ .-|.++ |-++|-.+++.-+ .+.+..+||+|+||+.-+ -+|+.. ....|.+ +|.+||.+.+
T Consensus 387 VDncs-R~CqsPa~~gL~rTvG~g~dsgs-------i~dve~ad~vliIG~N~te~HPV~asr~kra~k~~G~KliV~D~ 458 (978)
T COG3383 387 VDNCS-RYCQSPATDGLFRTVGSGADSGS-------IEDVEGADLVLIIGANPTEGHPVLASRLKRAHKLRGQKLIVIDP 458 (978)
T ss_pred cccch-hhccCcccccchheeeccCCCCC-------HHHHhhCCeEEEEcCCCCccCccHHHHHHHHHHhcCCeEEEecc
Confidence 44564 356653 5566666666533 566788999999998643 355332 2244555 9999999999
Q ss_pred CCCCCCCcccEEEECcHHH
Q 012378 237 QKTPKDKKASLVIHGFVDK 255 (465)
Q Consensus 237 ~~t~~d~~adl~I~g~~de 255 (465)
-++.....+|+.++-..+.
T Consensus 459 R~~emaerAdlf~~pkpGt 477 (978)
T COG3383 459 RKHEMAERADLFLHPKPGT 477 (978)
T ss_pred chhHHHHhhhcccCCCCCc
Confidence 9999999999998865543
No 97
>cd02755 MopB_Thiosulfate-R-like The MopB_Thiosulfate-R-like CD contains thiosulfate-, sulfur-, and polysulfide-reductases, and other related proteins. Thiosulfate reductase catalyzes the cleavage of sulfur-sulfur bonds in thiosulfate. Polysulfide reductase is a membrane-bound enzyme that catalyzes the reduction of polysulfide using either hydrogen or formate as the electron donor. Members of the MopB_Thiosulfate-R-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=68.23 E-value=4.5 Score=43.31 Aligned_cols=54 Identities=22% Similarity=0.238 Sum_probs=39.9
Q ss_pred HhccCCEEEEEccCCCcc-c--cCcccHHHhcCCCeEEEECCCCCCCCCcccEEEEC
Q 012378 198 HCKIADVVLCLGTSLQIT-P--ACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHG 251 (465)
Q Consensus 198 ~~~~aDLlLvlGTSL~V~-P--a~~Lp~~a~~~Ga~lViINl~~t~~d~~adl~I~g 251 (465)
.+.+||++|++|+..... + .......++++|+++|.|++..+.....+|.+|.-
T Consensus 153 d~~~ad~il~~G~n~~~~~~~~~~~~~~~a~~~g~kiivIdPr~t~ta~~AD~~i~i 209 (454)
T cd02755 153 DFENARYIILFGRNLAEAIIVVDARRLMKALENGAKVVVVDPRFSELASKADEWIPI 209 (454)
T ss_pred chhcCCEEEEECcCcccccccHHHHHHHHHHHCCCeEEEECCCCChhhHhhCEecCC
Confidence 466899999999976543 2 12222456678999999999998888888887643
No 98
>PF02233 PNTB: NAD(P) transhydrogenase beta subunit; InterPro: IPR012136 NAD(P) transhydrogenase catalyses the transfer of reducing equivalents between NAD(H) and NADP(H), coupled to the translocation of protons across a membrane []. It is an integral membrane protein found in most organisms except for yeasts, plants and some bacterial species. In bacterial species it is located in the cytoplasmic membrane, while in mitochondria it is located in the inner membrane. Under most physiological conditions this enzyme synthesises NADPH, driven by consumption of the proton electrochemical gradient. The resulting NADPH is subsequently used for biosynthetic reactions or the reduction of glutathione. The global structure of this enzyme is similar in all organisms, consisting of three distinct domains, though the polypeptide composition can vary. Domain I binds NAD(+)/NADH, domain II is a hydrophobic membrane-spanning domain, and domain III binds NADP(+)/NADPH. Domain I is composed of two subdomains, both of which form a Rossman fold, while domain III consists of a single Rossman fold where the NADP(+) is flipped relative to the normal orientation of bound nucleotides within the Rossman fold [, , ]. Several residues within these domains are thought to make functionally important interdomain contacts for hydride transfer between these domains []. Proton translocation occurs through domain II and is thought to induce conformational changes which are transmitted across domain III to the site of hydride transfer between domains I and III. This entry represents the beta subunit found in bacterial two-subunit NADP(H) transhydrogenases. This subunit forms domain III and part of the transmembrane domain II. ; GO: 0008750 NAD(P)+ transhydrogenase (AB-specific) activity, 0050661 NADP binding, 0055114 oxidation-reduction process, 0016021 integral to membrane; PDB: 1PT9_A 1DJL_A 1U31_B 2BRU_C 1PTJ_C 1HZZ_C 2FRD_C 2FSV_C 1XLT_C 1U2G_C ....
Probab=68.06 E-value=14 Score=40.34 Aligned_cols=87 Identities=22% Similarity=0.335 Sum_probs=53.4
Q ss_pred CcEEeCCCCCChh---hhhHHHHHhccCCEEEEEccCCCcccc---------CcccHHHhcCCCeEEEECCCCCC----C
Q 012378 178 DTVLDWEDALPPK---EMNPAEKHCKIADVVLCLGTSLQITPA---------CNLPLKCLRGGGKIVIVNLQKTP----K 241 (465)
Q Consensus 178 P~VV~FGE~lp~~---~~~~A~~~~~~aDLlLvlGTSL~V~Pa---------~~Lp~~a~~~Ga~lViINl~~t~----~ 241 (465)
-||++=+-.+|.+ ++++.-+.+.++|++||+|..-.|-|+ +.+|-.-..+-.++|.+++.-.+ .
T Consensus 356 MNVLLAEa~VpYd~~~emdeiN~~f~~~Dv~lViGANDvVNPaA~~d~~SpI~GMPil~v~~ak~Viv~Krsm~~Gyagv 435 (463)
T PF02233_consen 356 MNVLLAEANVPYDIVKEMDEINPDFPDTDVVLVIGANDVVNPAAREDPNSPIYGMPILEVWKAKQVIVIKRSMSPGYAGV 435 (463)
T ss_dssp HHHHHHHCT--GGGEEEHHHHGGGGGG-SEEEEES-SGGG-CHHCCSTTSTTTTSS---GGGSSEEEEEESSS--TTTS-
T ss_pred ceEEEEecCCCHHHHhhhhhcccchhcCCEEEEeccccccCchhccCCCCCCCCCeecchhhcCeEEEEEcCCCCCCCCC
Confidence 4566555566655 456666789999999999999888664 44453333344567777766432 1
Q ss_pred -----CCcccEEEECcHHHHHHHHHHHh
Q 012378 242 -----DKKASLVIHGFVDKVVAGVMDLL 264 (465)
Q Consensus 242 -----d~~adl~I~g~~devL~~L~~~L 264 (465)
....+.-+-||+.+.+.++.++|
T Consensus 436 ~NpLF~~~nt~MlfGDAk~~~~~l~~~~ 463 (463)
T PF02233_consen 436 DNPLFYKDNTRMLFGDAKKTLEELVAEL 463 (463)
T ss_dssp S-GGGGSTTEEEEES-HHHHHHHHHHHH
T ss_pred CCcceecCCcEEEeccHHHHHHHHHHhC
Confidence 23567889999999999998764
No 99
>cd02762 MopB_1 The MopB_1 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=67.30 E-value=11 Score=41.42 Aligned_cols=54 Identities=19% Similarity=0.222 Sum_probs=39.9
Q ss_pred HHhccCCEEEEEccCCCcc-ccC-c------ccHHHhcCCCeEEEECCCCCCCCCcccEEEE
Q 012378 197 KHCKIADVVLCLGTSLQIT-PAC-N------LPLKCLRGGGKIVIVNLQKTPKDKKASLVIH 250 (465)
Q Consensus 197 ~~~~~aDLlLvlGTSL~V~-Pa~-~------Lp~~a~~~Ga~lViINl~~t~~d~~adl~I~ 250 (465)
+.+.+||++|++|+..... |.. . ....++++|+++|.|++..+..-..+|++|.
T Consensus 152 ~D~~~ad~il~~G~N~~~s~~~~~~~~~~~~~~~~a~~~G~kliviDPr~t~ta~~AD~~l~ 213 (539)
T cd02762 152 PDIDRTDYLLILGANPLQSNGSLRTAPDRVLRLKAAKDRGGSLVVIDPRRTETAKLADEHLF 213 (539)
T ss_pred hhhhhCCEEEEEecChHhhCCccccccCHHHHHHHHHhCCCEEEEECCCCchhhHhcCEeeC
Confidence 3568899999999875543 211 1 2234667899999999999988888887764
No 100
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=66.59 E-value=10 Score=40.13 Aligned_cols=74 Identities=19% Similarity=0.310 Sum_probs=56.3
Q ss_pred cCcEEeCCCCCChhhh--hHHHHHh--ccCCEEEEEccCCCccccCcccHHHhc--CCCeEEEECCCCCCCCCcccEEEE
Q 012378 177 RDTVLDWEDALPPKEM--NPAEKHC--KIADVVLCLGTSLQITPACNLPLKCLR--GGGKIVIVNLQKTPKDKKASLVIH 250 (465)
Q Consensus 177 rP~VV~FGE~lp~~~~--~~A~~~~--~~aDLlLvlGTSL~V~Pa~~Lp~~a~~--~Ga~lViINl~~t~~d~~adl~I~ 250 (465)
-|.-+.|-+.+|...- -.+.+.+ +++|..|+||+ -|.++||..+.+ ...++|.|++-+++....+|++|.
T Consensus 306 Ypf~vdF~rG~prynPgE~s~vdlL~~k~vDAalvi~s----Dp~ah~P~~~~~~l~eIPvI~iDp~~~pTt~vadVviP 381 (429)
T COG1029 306 YPFAVDFSRGYPRYNPGEFSAVDLLKRKEVDAALVIAS----DPGAHFPRDAVEHLAEIPVICIDPHPTPTTEVADVVIP 381 (429)
T ss_pred CceeeecccCCcCCCcccccHHHHHhccCCCeEEEEec----CccccChHHHHHHhhcCCEEEecCCCCcchhhcceecc
Confidence 5888888888775322 1244444 47899999999 488999976654 578899999999999999999887
Q ss_pred CcHH
Q 012378 251 GFVD 254 (465)
Q Consensus 251 g~~d 254 (465)
+-++
T Consensus 382 ~aI~ 385 (429)
T COG1029 382 SAID 385 (429)
T ss_pred ccee
Confidence 7554
No 101
>TIGR01553 formate-DH-alph formate dehydrogenase, alpha subunit, proteobacterial-type. This model is well-defined, with a large, unpopulated trusted/noise gap.
Probab=66.41 E-value=8.3 Score=45.93 Aligned_cols=54 Identities=19% Similarity=0.288 Sum_probs=40.8
Q ss_pred HHhccCCEEEEEccCCCc-ccc-CcccHHHhcCCCeEEEECCCCCCCCCcccEEEE
Q 012378 197 KHCKIADVVLCLGTSLQI-TPA-CNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIH 250 (465)
Q Consensus 197 ~~~~~aDLlLvlGTSL~V-~Pa-~~Lp~~a~~~Ga~lViINl~~t~~d~~adl~I~ 250 (465)
..+.++|++|++|+.... .|. ......++++|+++|.||+..+..-..+|++|.
T Consensus 217 ~Di~~Ad~Ilv~G~Np~es~p~~~~~i~~Ak~~GakiIvIDPR~t~tA~~AD~~l~ 272 (1009)
T TIGR01553 217 VDIKNSDLILVMGGNPAENHPIGFKWAIRAKKKGAKIIHIDPRFNRTATVADLYAP 272 (1009)
T ss_pred HHHHhCCEEEEECCChhhhChHHHHHHHHHHHcCCEEEEEcCCCCchhHhhccEeC
Confidence 457889999999997543 342 223345778999999999999888788887763
No 102
>PRK12496 hypothetical protein; Provisional
Probab=66.20 E-value=2.8 Score=39.31 Aligned_cols=53 Identities=17% Similarity=0.550 Sum_probs=30.7
Q ss_pred EEee--cccchhhhcCCCCCceEEcCCC-----C-ccccCCCCCCcccchhhhhhhccccCCCCCCCCCCCCccc
Q 012378 111 VISQ--NVDGLHLRSGIPREKLAELHGN-----S-FMEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLR 177 (465)
Q Consensus 111 VITQ--NIDgLH~rAG~p~~kViELHGn-----l-~~~~C~~C~~~y~rd~~~~~i~~~~~~P~C~~p~CGg~Lr 177 (465)
++|. |+-..-..-|+ ++.-+|+. . +..+|..|++.|..+.. .-.| |.||..++
T Consensus 94 lvtDD~~~~~vA~~lgi---~v~~~~~~~i~~~~~w~~~C~gC~~~~~~~~~---------~~~C--~~CG~~~~ 154 (164)
T PRK12496 94 LYTDDYGIQNVAKKLNI---KFENIKTKGIKKVIKWRKVCKGCKKKYPEDYP---------DDVC--EICGSPVK 154 (164)
T ss_pred EECcHHHHHHHHHHcCC---eEeccccccchhheeeeEECCCCCccccCCCC---------CCcC--CCCCChhh
Confidence 4553 23333344565 46666622 1 23579999998854321 1258 79998864
No 103
>cd02752 MopB_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=65.16 E-value=6.4 Score=44.63 Aligned_cols=54 Identities=28% Similarity=0.383 Sum_probs=39.9
Q ss_pred HHhccCCEEEEEccCCCc-ccc-CcccHHHhcC-CCeEEEECCCCCCCCCcccEEEE
Q 012378 197 KHCKIADVVLCLGTSLQI-TPA-CNLPLKCLRG-GGKIVIVNLQKTPKDKKASLVIH 250 (465)
Q Consensus 197 ~~~~~aDLlLvlGTSL~V-~Pa-~~Lp~~a~~~-Ga~lViINl~~t~~d~~adl~I~ 250 (465)
..++++|++|++|+.... .|. ......++++ |+++|.|++..|.....+|+.+.
T Consensus 165 ~Di~nAd~Ili~GsNpae~hPv~~~~i~~Ak~~~GaklIvVDPR~t~Ta~~AD~~l~ 221 (649)
T cd02752 165 NDIKNADVILVMGGNPAEAHPVSFKWILEAKEKNGAKLIVVDPRFTRTAAKADLYVP 221 (649)
T ss_pred HHHhcCCEEEEECCChHHhCcHHHHHHHHHHHcCCCeEEEEcCCCCchhHhcCEeeC
Confidence 457889999999997653 453 2223446655 99999999999888777887664
No 104
>cd02760 MopB_Phenylacetyl-CoA-OR The MopB_Phenylacetyl-CoA-OR CD contains the phenylacetyl-CoA:acceptor oxidoreductase, large subunit (PadB2), and other related proteins. The phenylacetyl-CoA:acceptor oxidoreductase has been characterized as a membrane-bound molybdenum-iron-sulfur enzyme involved in anaerobic metabolism of phenylalanine in the denitrifying bacterium Thauera aromatica. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=64.98 E-value=11 Score=43.45 Aligned_cols=57 Identities=16% Similarity=0.133 Sum_probs=41.9
Q ss_pred HHHhccCCEEEEEccCCCcc--c-cCcccHHHhcCCCeEEEECCCCCCCCCcccEEEECc
Q 012378 196 EKHCKIADVVLCLGTSLQIT--P-ACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGF 252 (465)
Q Consensus 196 ~~~~~~aDLlLvlGTSL~V~--P-a~~Lp~~a~~~Ga~lViINl~~t~~d~~adl~I~g~ 252 (465)
...+.+||++|++|+..... | ..+....++++|+++|.|++-.+.....+|.+|.-.
T Consensus 168 ~~D~~~ad~Il~~G~Np~~s~~~~~~~~~~~ar~~GaKlIvVDPr~t~ta~~AD~wlpir 227 (760)
T cd02760 168 AADTPLANYVISFGSNVEASGGPCAVTRHADARVRGYKRVQVEPHLSVTGACSAEWVPIR 227 (760)
T ss_pred cchHhcCCEEEEECCCchHhcCcHHHHHHHHHHHcCCeEEEEcCCCCcchhhcCeEeCcC
Confidence 34567899999999986432 2 122224566789999999999999888888877433
No 105
>cd00368 Molybdopterin-Binding Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-containing enzymes, including formate dehydrogenase-H (Fdh-H) and -N (Fdh-N), several forms of nitrate reductase (Nap, Nas, NarG), dimethylsulfoxide reductase (DMSOR), thiosulfate reductase, formylmethanofuran dehydrogenase, and arsenite oxidase. Molybdenum is present in most of these enzymes in the form of molybdopterin, a modified pterin ring with a dithiolene side chain, which is responsible for ligating the Mo. In many bacterial and archaeal species, molybdopterin is in the form of a dinucleotide, with two molybdopterin dinucleotide units per molybdenum. These proteins can function as monomers, heterodimers, or heterotrimers, depending on the protein and organism. Also included in the MopB superfamily is
Probab=64.22 E-value=6.1 Score=40.32 Aligned_cols=54 Identities=19% Similarity=0.303 Sum_probs=38.6
Q ss_pred HHhccCCEEEEEccCCCc-ccc-CcccHHHhcCCCeEEEECCCCCCCCCcccEEEE
Q 012378 197 KHCKIADVVLCLGTSLQI-TPA-CNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIH 250 (465)
Q Consensus 197 ~~~~~aDLlLvlGTSL~V-~Pa-~~Lp~~a~~~Ga~lViINl~~t~~d~~adl~I~ 250 (465)
..+.+||++|++|+.... .|. ......++++|+++|.|++..+.....+|.+|.
T Consensus 152 ~d~~~ad~il~~G~n~~~~~~~~~~~~~~a~~~g~kvv~idp~~s~t~~~ad~~i~ 207 (374)
T cd00368 152 ADIENADLILLWGSNPAETHPVLAARLRRAKKRGAKLIVIDPRRTETAAKADEWLP 207 (374)
T ss_pred HHHhhCCEEEEEcCChHHhChHHHHHHHHHHHCCCeEEEEcCCCCcchHhhCEeeC
Confidence 346689999999987644 332 122245667899999999999887666777653
No 106
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=64.11 E-value=3.7 Score=28.73 Aligned_cols=34 Identities=26% Similarity=0.542 Sum_probs=21.1
Q ss_pred ccCCCCCCcccchhhhhhhccccCCCCCCCCCCCCccc
Q 012378 140 EACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLR 177 (465)
Q Consensus 140 ~~C~~C~~~y~rd~~~~~i~~~~~~P~C~~p~CGg~Lr 177 (465)
..|+.|+..|.-+.+ .+.....-.+| |+||..+.
T Consensus 3 ~~CP~C~~~~~v~~~--~~~~~~~~v~C--~~C~~~~~ 36 (38)
T TIGR02098 3 IQCPNCKTSFRVVDS--QLGANGGKVRC--GKCGHVWY 36 (38)
T ss_pred EECCCCCCEEEeCHH--HcCCCCCEEEC--CCCCCEEE
Confidence 579999998754432 22222223579 79998653
No 107
>cd02770 MopB_DmsA-EC This CD (MopB_DmsA-EC) includes the DmsA enzyme of the dmsABC operon encoding the anaerobic dimethylsulfoxide reductase (DMSOR) of Escherichia coli and other related DMSOR-like enzymes. Unlike other DMSOR-like enzymes, this group has a predicted N-terminal iron-sulfur [4Fe-4S] cluster binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=61.81 E-value=8.4 Score=43.01 Aligned_cols=54 Identities=19% Similarity=0.191 Sum_probs=39.5
Q ss_pred HHhccCCEEEEEccCCCcc-cc----CcccHHHhcCCCeEEEECCCCCCCCC-cccEEEE
Q 012378 197 KHCKIADVVLCLGTSLQIT-PA----CNLPLKCLRGGGKIVIVNLQKTPKDK-KASLVIH 250 (465)
Q Consensus 197 ~~~~~aDLlLvlGTSL~V~-Pa----~~Lp~~a~~~Ga~lViINl~~t~~d~-~adl~I~ 250 (465)
..+.+||++|++|+...+. +. ......++++|+++|.|++..+..-. .+|++|.
T Consensus 162 ~D~~~a~~ii~wG~N~~~~~~~~~~~~~~~~~a~~~G~klivIDPr~t~tA~~~AD~~i~ 221 (617)
T cd02770 162 DDLKDSKLVVLFGHNPAETRMGGGGSTYYYLQAKKAGAKFIVIDPRYTDTAVTLADEWIP 221 (617)
T ss_pred HHHhcCCEEEEECCCHHHhcCCCCchHHHHHHHHHcCCeEEEECCCCCccccccCCEEEC
Confidence 4566899999999875543 21 12334577789999999999988775 6887654
No 108
>cd02757 MopB_Arsenate-R This CD includes the respiratory arsenate reductase, As(V), catalytic subunit (ArrA) and other related proteins. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=61.79 E-value=11 Score=41.25 Aligned_cols=67 Identities=13% Similarity=0.092 Sum_probs=44.2
Q ss_pred HhccCCEEEEEccCCCc--cccC--cccHHHhcCCCeEEEECCCCCCCCCcccEEEE---CcHHHHHHHHHHHh
Q 012378 198 HCKIADVVLCLGTSLQI--TPAC--NLPLKCLRGGGKIVIVNLQKTPKDKKASLVIH---GFVDKVVAGVMDLL 264 (465)
Q Consensus 198 ~~~~aDLlLvlGTSL~V--~Pa~--~Lp~~a~~~Ga~lViINl~~t~~d~~adl~I~---g~~devL~~L~~~L 264 (465)
.+.+||++|++|+.... ++.. .-...++++|+++|.|++..+.....+|.+|. |.=..++-.|++.|
T Consensus 159 D~~~a~~Il~~G~n~~~t~~~~~~~~~~~~a~~~gakliviDPr~s~ta~~AD~~l~i~PGtD~al~lama~~i 232 (523)
T cd02757 159 DYANAKYILFFGADPLESNRQNPHAQRIWGGKMDQAKVVVVDPRLSNTAAKADEWLPIKPGEDGALALAIAHVI 232 (523)
T ss_pred chhcCcEEEEECCChHHhCCCcHHHHHHHHHHHCCCEEEEECCCCChhhHhcCEeeCCCCCcHHHHHHHHHHHH
Confidence 46789999999987533 2211 11234567899999999999888778888773 33333444444443
No 109
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=61.77 E-value=3.6 Score=30.23 Aligned_cols=29 Identities=34% Similarity=0.572 Sum_probs=19.3
Q ss_pred cccCCCCCCcccchhhhhhhccccCCCCCCCCCCCCcc
Q 012378 139 MEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKL 176 (465)
Q Consensus 139 ~~~C~~C~~~y~rd~~~~~i~~~~~~P~C~~p~CGg~L 176 (465)
..+|.+||.++..+... ...+| |.||+.+
T Consensus 3 ~y~C~~CG~~~~~~~~~-------~~~~C--p~CG~~~ 31 (46)
T PRK00398 3 EYKCARCGREVELDEYG-------TGVRC--PYCGYRI 31 (46)
T ss_pred EEECCCCCCEEEECCCC-------CceEC--CCCCCeE
Confidence 46899999877544221 13479 8999863
No 110
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=61.45 E-value=5.1 Score=37.08 Aligned_cols=30 Identities=30% Similarity=0.500 Sum_probs=20.3
Q ss_pred CccccCCCCCCcccchhhhhhhccccCCCCCCCCCCCCc
Q 012378 137 SFMEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAK 175 (465)
Q Consensus 137 l~~~~C~~C~~~y~rd~~~~~i~~~~~~P~C~~p~CGg~ 175 (465)
....+|.+||+..... ....+|.| |+||+.
T Consensus 110 ~G~l~C~~Cg~~~~~~-------~~~~l~~C--p~C~~~ 139 (146)
T PF07295_consen 110 PGTLVCENCGHEVELT-------HPERLPPC--PKCGHT 139 (146)
T ss_pred CceEecccCCCEEEec-------CCCcCCCC--CCCCCC
Confidence 3456999999865332 12347889 899975
No 111
>COG5033 TFG3 Transcription initiation factor IIF, auxiliary subunit [Transcription]
Probab=61.34 E-value=21 Score=35.08 Aligned_cols=73 Identities=16% Similarity=0.318 Sum_probs=51.8
Q ss_pred eeeEEEEeeecCCCCCcccceEeEeecccccccccccccCCCeEEEEecccccceEEEEEEeecCCCCCCcccccc
Q 012378 292 VNWTLRITSVHGQTAQLPFIKSVEVSFSDRQKYKEASLDKQPFQLKRRTVINETFDIKLKLNFSDGCGCPCTQINI 367 (465)
Q Consensus 292 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~f~~~~~~~~~~~~~ 367 (465)
.-|.+.|.+..+ -.+.+|++.|....-+...-+-+.+.++||.+.-+. =|+|+|.|+.-|.++.|+-.+.-.+
T Consensus 36 h~w~v~v~~~g~-E~~~~iv~KVifkLH~Tf~NP~Rti~~pPFeI~EtG--WGEF~i~I~iff~~~age~~~~fyl 108 (225)
T COG5033 36 HIWLVFVRAPGK-EDIATIVKKVIFKLHPTFSNPTRTIESPPFEIKETG--WGEFDIQIKIFFAEKAGEKTIHFYL 108 (225)
T ss_pred EEEEEEEeCCCC-cchhhhhheeeEEeccccCCCcccccCCCcEEEecc--cccceEEEEEEEecCCCceEeehhh
Confidence 346665544332 356889999998644433334578999999998443 4899999999999999987665443
No 112
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=61.34 E-value=5.1 Score=37.30 Aligned_cols=32 Identities=25% Similarity=0.512 Sum_probs=23.6
Q ss_pred ccccCCCCCCcccchhhhhhhccccCCCCCCCCCCCCccc
Q 012378 138 FMEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLR 177 (465)
Q Consensus 138 ~~~~C~~C~~~y~rd~~~~~i~~~~~~P~C~~p~CGg~Lr 177 (465)
....|+.|+.+|..+...+ ....| |.||+.|.
T Consensus 108 ~~Y~Cp~c~~r~tf~eA~~------~~F~C--p~Cg~~L~ 139 (158)
T TIGR00373 108 MFFICPNMCVRFTFNEAME------LNFTC--PRCGAMLD 139 (158)
T ss_pred CeEECCCCCcEeeHHHHHH------cCCcC--CCCCCEee
Confidence 3468999999987665432 25689 89999964
No 113
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=61.33 E-value=4.9 Score=38.21 Aligned_cols=32 Identities=31% Similarity=0.670 Sum_probs=23.9
Q ss_pred cccCCCCCCcccchhhhhhhccccCCCCCCCCCCCCcccC
Q 012378 139 MEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLRD 178 (465)
Q Consensus 139 ~~~C~~C~~~y~rd~~~~~i~~~~~~P~C~~p~CGg~LrP 178 (465)
...|+.|+..|..+...+ ....| |.||+.|..
T Consensus 117 ~Y~Cp~C~~rytf~eA~~------~~F~C--p~Cg~~L~~ 148 (178)
T PRK06266 117 FFFCPNCHIRFTFDEAME------YGFRC--PQCGEMLEE 148 (178)
T ss_pred EEECCCCCcEEeHHHHhh------cCCcC--CCCCCCCee
Confidence 358999999987664332 35689 899999874
No 114
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=61.08 E-value=4.3 Score=30.30 Aligned_cols=31 Identities=19% Similarity=0.552 Sum_probs=19.1
Q ss_pred ccccCCCCCCcccchhhhhhhccccCCCCCCCCCCCC
Q 012378 138 FMEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGA 174 (465)
Q Consensus 138 ~~~~C~~C~~~y~rd~~~~~i~~~~~~P~C~~p~CGg 174 (465)
+..+|.+|+..|.... .+.. .....| |.||+
T Consensus 4 Yey~C~~Cg~~fe~~~---~~~~-~~~~~C--P~Cg~ 34 (52)
T TIGR02605 4 YEYRCTACGHRFEVLQ---KMSD-DPLATC--PECGG 34 (52)
T ss_pred EEEEeCCCCCEeEEEE---ecCC-CCCCCC--CCCCC
Confidence 4568999998764321 1111 234568 89997
No 115
>PRK15488 thiosulfate reductase PhsA; Provisional
Probab=60.68 E-value=13 Score=42.48 Aligned_cols=54 Identities=13% Similarity=0.059 Sum_probs=40.1
Q ss_pred HhccCCEEEEEccCCCc-cccC--cccHHHh-cCCCeEEEECCCCCCCCCcccEEEEC
Q 012378 198 HCKIADVVLCLGTSLQI-TPAC--NLPLKCL-RGGGKIVIVNLQKTPKDKKASLVIHG 251 (465)
Q Consensus 198 ~~~~aDLlLvlGTSL~V-~Pa~--~Lp~~a~-~~Ga~lViINl~~t~~d~~adl~I~g 251 (465)
.+.+||++|++|+.... .|.. +....++ ++|+++|.|++..+.....+|++|.-
T Consensus 193 D~~~ad~Il~~G~N~~~~~~~~~~~~~~~a~~~~G~kiivIDPr~s~ta~~Ad~~l~i 250 (759)
T PRK15488 193 DLANSKYIINFGHNLYEGINMSDTRGLMTAQMEKGAKLVVFEPRFSVVASKADEWHAI 250 (759)
T ss_pred CHhhCcEEEEeccChHhcCCcHHHHHHHHHHHhCCCEEEEECCCCCcchhhCCeeecc
Confidence 46789999999987654 3432 2223455 68999999999999888888887743
No 116
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=60.50 E-value=6 Score=34.84 Aligned_cols=30 Identities=33% Similarity=0.968 Sum_probs=20.7
Q ss_pred ccCCCCCCcccchhhhhhhccccCCCCCCCCCCCCcccCc
Q 012378 140 EACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLRDT 179 (465)
Q Consensus 140 ~~C~~C~~~y~rd~~~~~i~~~~~~P~C~~p~CGg~LrP~ 179 (465)
-.|++||+.|+- ++..+-.| |+||....|.
T Consensus 10 R~Cp~CG~kFYD--------Lnk~PivC--P~CG~~~~~~ 39 (108)
T PF09538_consen 10 RTCPSCGAKFYD--------LNKDPIVC--PKCGTEFPPE 39 (108)
T ss_pred ccCCCCcchhcc--------CCCCCccC--CCCCCccCcc
Confidence 479999987631 22234469 8999887766
No 117
>TIGR01701 Fdhalpha-like oxidoreductase alpha (molybdopterin) subunit. This model represents a well-defined clade of oxidoreductase alpha subunits most closely related to a group of formate dehydrogenases including the E. coli FdhH protein (TIGR01591). These alpha subunits contain a molybdopterin cofactor and generally associate with two other subunits which contain iron-sulfur clusters and cytochromes. The particular subunits with which this enzyme interacts and the substrate which is reduced is unknown at this time. In Ralstonia, the gene is associated with the cbb operon, but is not essential for CO2 fixation.
Probab=59.76 E-value=16 Score=42.12 Aligned_cols=44 Identities=16% Similarity=0.317 Sum_probs=30.8
Q ss_pred HHhccCCEEEEEccCCCc-ccc-CcccHHHhcCCCeEEEECCCCCC
Q 012378 197 KHCKIADVVLCLGTSLQI-TPA-CNLPLKCLRGGGKIVIVNLQKTP 240 (465)
Q Consensus 197 ~~~~~aDLlLvlGTSL~V-~Pa-~~Lp~~a~~~Ga~lViINl~~t~ 240 (465)
+.+.+||++|++|+...+ .|. ......++++|+++|.||+-.+.
T Consensus 194 ~Di~~ad~Il~~G~Np~~~~p~~~~~l~~a~~rGakiIvIdP~~~~ 239 (743)
T TIGR01701 194 EDFEHTDCLVFIGSNAGTNHPRMLKYLYAAKKRGAKIIAINPLRER 239 (743)
T ss_pred hHHHhCCEEEEEecCcccccHHHHHHHHHHHHCCCEEEEECCCCcc
Confidence 456789999999986433 232 11224577899999999996643
No 118
>cd02769 MopB_DMSOR-BSOR-TMAOR The MopB_DMSOR-BSOR-TMAOR CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR always catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=59.56 E-value=13 Score=41.56 Aligned_cols=60 Identities=10% Similarity=0.112 Sum_probs=40.9
Q ss_pred HhccCCEEEEEccCCCcc-c----------cCcccHHHhcCCCeEEEECCCCCCCCCccc---EEEECcHHHHH
Q 012378 198 HCKIADVVLCLGTSLQIT-P----------ACNLPLKCLRGGGKIVIVNLQKTPKDKKAS---LVIHGFVDKVV 257 (465)
Q Consensus 198 ~~~~aDLlLvlGTSL~V~-P----------a~~Lp~~a~~~Ga~lViINl~~t~~d~~ad---l~I~g~~devL 257 (465)
.+.+||++|+.|+..... | .......++++|+++|.|++-.+..-..+| +.|+-..|-.|
T Consensus 167 ~~~~a~~il~wG~Np~~t~~~~~~~~~~~~~~~~~~~ar~~GaklIvIDPr~t~tA~~add~~l~irPGTD~AL 240 (609)
T cd02769 167 IAEHTELVVAFGADPLKNAQIAWGGIPDHQAYSYLKALKDRGIRFISISPLRDDTAAELGAEWIAIRPGTDVAL 240 (609)
T ss_pred HHhhCCeEEEECCChHHhCcccccccCCcchHHHHHHHHhCCCEEEEEcCCCCcchhhhcCcEeccCCCcHHHH
Confidence 357899999999875432 2 112224577899999999999988766654 34555555444
No 119
>TIGR00509 bisC_fam molybdopterin guanine dinucleotide-containing S/N-oxide reductases. This enzyme family shares sequence similarity and a requirement for a molydenum cofactor as the only prosthetic group. The form of the cofactor is a single molybdenum atom coordinated by two molybdopterin guanine dinucleotide molecules. Members of the family include biotin sulfoxide reductase, dimethylsulfoxide reductase, and trimethylamine-N-oxide reductase, although a single member may show all those activities and related activities; it may not be possible to resolve the primary function for members of this family by sequence comparison alone. A number of similar molybdoproteins in which the N-terminal region contains a CXXXC motif and may bind an iron-sulfur cluster are excluded from this set, including formate dehydrogenases and nitrate reductases. Also excluded is the A chain of a heteromeric, anaerobic DMSO reductase, which also contains the CXXXC motif.
Probab=59.14 E-value=12 Score=43.04 Aligned_cols=59 Identities=12% Similarity=0.086 Sum_probs=41.0
Q ss_pred hccCCEEEEEccCCCcc----------ccCcccHHHhcCCCeEEEECCCCCCCCCcc-cEEE--ECcHHHHH
Q 012378 199 CKIADVVLCLGTSLQIT----------PACNLPLKCLRGGGKIVIVNLQKTPKDKKA-SLVI--HGFVDKVV 257 (465)
Q Consensus 199 ~~~aDLlLvlGTSL~V~----------Pa~~Lp~~a~~~Ga~lViINl~~t~~d~~a-dl~I--~g~~devL 257 (465)
+.+||++|++|+...+. +...+...++++|+++|.|++-.|..-..+ |++| +-..|-.|
T Consensus 165 ~~~a~~il~~G~Np~~t~~~~~~~~~~~~~~~~~~a~~~G~klIvIDPr~t~tA~~aaD~~l~irPGTD~AL 236 (770)
T TIGR00509 165 LENSKVLVLWGADPLKTSQIAWGIPDHGGYEYLERLKAKGKRVISIDPVRTETAEFFGAEWIPPNPQTDVAL 236 (770)
T ss_pred HhcCCEEEEeCCCHHHhCccccccCCcchHHHHHHHHHcCCEEEEEcCCCCcchhhccCeEeCcCCCcHHHH
Confidence 57899999999875542 222333457789999999999999877764 5654 44444433
No 120
>cd02751 MopB_DMSOR-like The MopB_DMSOR-like CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Also included in this group is the pyrogallol-phloroglucinol transhydroxylase from Pelobacter acidigallici. Members of the MopB_DMSOR-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=58.28 E-value=22 Score=39.56 Aligned_cols=50 Identities=14% Similarity=0.116 Sum_probs=37.1
Q ss_pred cCCEEEEEccCCCc-cccC---------cccHHHhcCCCeEEEECCCCCCCCC-cccEEEE
Q 012378 201 IADVVLCLGTSLQI-TPAC---------NLPLKCLRGGGKIVIVNLQKTPKDK-KASLVIH 250 (465)
Q Consensus 201 ~aDLlLvlGTSL~V-~Pa~---------~Lp~~a~~~Ga~lViINl~~t~~d~-~adl~I~ 250 (465)
+||++|++|+.... .|.. .....++++|+++|.|++..+.... .+|++|.
T Consensus 169 ~ad~il~wG~N~~~~~~~~~~~~~~~~~~~~~~a~~~GakiivIDPr~s~ta~~~AD~~l~ 229 (609)
T cd02751 169 HSDLVVLFGANPLKTRQGGGGGPDHGSYYYLKQAKDAGVRFICIDPRYTDTAAVLAAEWIP 229 (609)
T ss_pred cCCEEEEECCCHHHhcCCCCCccCcchHHHHHHHHHCCCeEEEECCCCCccccccCCEEEC
Confidence 59999999987543 2321 2334577889999999999988876 6887764
No 121
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=57.96 E-value=63 Score=35.56 Aligned_cols=22 Identities=9% Similarity=0.099 Sum_probs=14.1
Q ss_pred hhHHHHHhccCCEEEEEccCCC
Q 012378 192 MNPAEKHCKIADVVLCLGTSLQ 213 (465)
Q Consensus 192 ~~~A~~~~~~aDLlLvlGTSL~ 213 (465)
++...+.+.+-+.=|+|||.+.
T Consensus 301 ~~~~l~~f~~g~~~ILVgT~~i 322 (505)
T TIGR00595 301 HEALLNQFANGKADILIGTQMI 322 (505)
T ss_pred HHHHHHHHhcCCCCEEEeCccc
Confidence 4556666666555566888764
No 122
>PRK09939 putative oxidoreductase; Provisional
Probab=57.65 E-value=11 Score=43.69 Aligned_cols=44 Identities=18% Similarity=0.370 Sum_probs=30.7
Q ss_pred HHHhccCCEEEEEccCCCc-cccC-cccHHHhcCCCeEEEECCCCC
Q 012378 196 EKHCKIADVVLCLGTSLQI-TPAC-NLPLKCLRGGGKIVIVNLQKT 239 (465)
Q Consensus 196 ~~~~~~aDLlLvlGTSL~V-~Pa~-~Lp~~a~~~Ga~lViINl~~t 239 (465)
.+.+.+||++|++|+...+ .|.. .....++++|+++|.||+-.+
T Consensus 203 l~Di~~ad~Ili~G~Np~~~hP~~~~~l~~a~~rGakiIvIDPr~~ 248 (759)
T PRK09939 203 LEDFEKCDLVICIGHNPGTNHPRMLTSLRALVKRGAKMIAINPLQE 248 (759)
T ss_pred HHHHhhCCEEEEeCCChHHHHHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 3456889999999987443 3321 111356788999999999664
No 123
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=56.96 E-value=13 Score=32.09 Aligned_cols=57 Identities=21% Similarity=0.188 Sum_probs=44.9
Q ss_pred HHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECC-CCCCCCCcccEEEECcH
Q 012378 197 KHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNL-QKTPKDKKASLVIHGFV 253 (465)
Q Consensus 197 ~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl-~~t~~d~~adl~I~g~~ 253 (465)
..+.+-|++|++.-|............++++|+++|.|-- ...+..+.+|+.|....
T Consensus 43 ~~~~~~d~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la~~ad~~l~~~~ 100 (128)
T cd05014 43 GMVTPGDVVIAISNSGETDELLNLLPHLKRRGAPIIAITGNPNSTLAKLSDVVLDLPV 100 (128)
T ss_pred CcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCCchhhhCCEEEECCC
Confidence 3457789999999999988888888889999998776654 45677778888886644
No 124
>PRK11032 hypothetical protein; Provisional
Probab=56.60 E-value=6.2 Score=37.12 Aligned_cols=29 Identities=24% Similarity=0.343 Sum_probs=19.7
Q ss_pred ccccCCCCCCcccchhhhhhhccccCCCCCCCCCCCCc
Q 012378 138 FMEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAK 175 (465)
Q Consensus 138 ~~~~C~~C~~~y~rd~~~~~i~~~~~~P~C~~p~CGg~ 175 (465)
..++|.+||+..... ....+|.| |+||+.
T Consensus 123 G~LvC~~Cg~~~~~~-------~p~~i~pC--p~C~~~ 151 (160)
T PRK11032 123 GNLVCEKCHHHLAFY-------TPEVLPLC--PKCGHD 151 (160)
T ss_pred ceEEecCCCCEEEec-------CCCcCCCC--CCCCCC
Confidence 456999999865221 22347889 899974
No 125
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=56.24 E-value=6.3 Score=36.08 Aligned_cols=35 Identities=26% Similarity=0.575 Sum_probs=22.2
Q ss_pred ccCCCCCCcccchhhhhhhccccCCCCCCCCCCCCccc
Q 012378 140 EACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLR 177 (465)
Q Consensus 140 ~~C~~C~~~y~rd~~~~~i~~~~~~P~C~~p~CGg~Lr 177 (465)
..|+.|+..|..+....... ...--.| |.||+.|.
T Consensus 100 Y~Cp~C~~~y~~~ea~~~~d-~~~~f~C--p~Cg~~l~ 134 (147)
T smart00531 100 YKCPNCQSKYTFLEANQLLD-MDGTFTC--PRCGEELE 134 (147)
T ss_pred EECcCCCCEeeHHHHHHhcC-CCCcEEC--CCCCCEEE
Confidence 58999999887543222111 1112689 89999875
No 126
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=54.86 E-value=8.6 Score=34.87 Aligned_cols=30 Identities=20% Similarity=0.505 Sum_probs=20.8
Q ss_pred ccCCCCCCcccchhhhhhhccccCCCCCCCCCCCCcccCc
Q 012378 140 EACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLRDT 179 (465)
Q Consensus 140 ~~C~~C~~~y~rd~~~~~i~~~~~~P~C~~p~CGg~LrP~ 179 (465)
-.|++||+.|+- +...+..| |+||....|.
T Consensus 10 r~Cp~cg~kFYD--------Lnk~p~vc--P~cg~~~~~~ 39 (129)
T TIGR02300 10 RICPNTGSKFYD--------LNRRPAVS--PYTGEQFPPE 39 (129)
T ss_pred ccCCCcCccccc--------cCCCCccC--CCcCCccCcc
Confidence 479999987631 23345679 8999876554
No 127
>PRK06260 threonine synthase; Validated
Probab=54.78 E-value=7.1 Score=41.29 Aligned_cols=28 Identities=36% Similarity=0.732 Sum_probs=19.6
Q ss_pred ccccCCCCCCcccchhhhhhhccccCCCCCCCCCCCCcc
Q 012378 138 FMEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKL 176 (465)
Q Consensus 138 ~~~~C~~C~~~y~rd~~~~~i~~~~~~P~C~~p~CGg~L 176 (465)
..++|..||++|..+. ...+| |.||+.|
T Consensus 2 ~~~~C~~cg~~~~~~~---------~~~~C--p~cg~~l 29 (397)
T PRK06260 2 YWLKCIECGKEYDPDE---------IIYTC--PECGGLL 29 (397)
T ss_pred CEEEECCCCCCCCCCC---------ccccC--CCCCCeE
Confidence 4579999999885331 23578 7898864
No 128
>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function.
Probab=53.75 E-value=8.1 Score=35.21 Aligned_cols=27 Identities=30% Similarity=0.727 Sum_probs=17.6
Q ss_pred cCCCCCCcccchhhhhhhccccCCCCCCCCCCCCcc
Q 012378 141 ACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKL 176 (465)
Q Consensus 141 ~C~~C~~~y~rd~~~~~i~~~~~~P~C~~p~CGg~L 176 (465)
+|++||+.|..... + + .--| |.||+..
T Consensus 3 ~Ct~Cg~~f~dgs~-e-i-----l~GC--P~CGg~k 29 (131)
T PF09845_consen 3 QCTKCGRVFEDGSK-E-I-----LSGC--PECGGNK 29 (131)
T ss_pred ccCcCCCCcCCCcH-H-H-----HccC--cccCCcc
Confidence 89999998853221 1 1 2348 7899863
No 129
>cd02761 MopB_FmdB-FwdB The MopB_FmdB-FwdB CD contains the molybdenum/tungsten formylmethanofuran dehydrogenases, subunit B (FmdB/FwdB), and other related proteins. Formylmethanofuran dehydrogenase catalyzes the first step in methane formation from CO2 in methanogenic archaea and some eubacteria. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=53.62 E-value=25 Score=36.67 Aligned_cols=52 Identities=21% Similarity=0.289 Sum_probs=35.6
Q ss_pred ccCCEEEEEccCCCc-cccC--cccH-------HHhcCCCeEEEECCCCCCCCCcccEEEEC
Q 012378 200 KIADVVLCLGTSLQI-TPAC--NLPL-------KCLRGGGKIVIVNLQKTPKDKKASLVIHG 251 (465)
Q Consensus 200 ~~aDLlLvlGTSL~V-~Pa~--~Lp~-------~a~~~Ga~lViINl~~t~~d~~adl~I~g 251 (465)
.++|++|++|+.... .|.. ++.. .+.++|+++|.|++..+.....+|.+|.-
T Consensus 130 ~~ad~il~~G~n~~~~~p~~~~~~~~~~~~~~~~~~~~g~kli~idp~~t~ta~~Ad~~l~i 191 (415)
T cd02761 130 NRADVIVYWGTNPMHAHPRHMSRYSVFPRGFFREGGREDRTLIVVDPRKSDTAKLADIHLQI 191 (415)
T ss_pred hcCCEEEEEcCCccccccHHhhhhhhhhhhhccccCCCCCEEEEEcCCCcchhhhcceEEec
Confidence 479999999987554 3321 1100 01247889999999998887778877643
No 130
>PRK13937 phosphoheptose isomerase; Provisional
Probab=53.23 E-value=15 Score=34.77 Aligned_cols=57 Identities=12% Similarity=-0.043 Sum_probs=45.6
Q ss_pred HHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEE-CCCCCCCCCcccEEEECcH
Q 012378 197 KHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIV-NLQKTPKDKKASLVIHGFV 253 (465)
Q Consensus 197 ~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViI-Nl~~t~~d~~adl~I~g~~ 253 (465)
..+.+-|++|++-.|..+.-.......++++|+++|.| +...++....+|+.|.-..
T Consensus 102 ~~~~~~Dl~i~iS~sG~t~~~~~~~~~ak~~g~~~I~iT~~~~s~L~~~ad~~l~~~~ 159 (188)
T PRK13937 102 ALGRPGDVLIGISTSGNSPNVLAALEKARELGMKTIGLTGRDGGKMKELCDHLLIVPS 159 (188)
T ss_pred hhCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEeCC
Confidence 35678899999999999888888878899999998877 5566777778888776443
No 131
>PF00384 Molybdopterin: Molybdopterin oxidoreductase; InterPro: IPR006656 This domain is found in a number of molybdopterin-containing oxidoreductases, tungsten formylmethanofuran dehydrogenase subunit d (FwdD) and molybdenum formylmethanofuran dehydrogenase subunit (FmdD); where a single domain constitutes almost the entire subunit. The formylmethanofuran dehydrogenase catalyses the first step in methane formation from CO2 in methanogenic archaea and has a molybdopterin dinucleotide cofactor []. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1TI2_G 1VLE_M 1VLD_U 1VLF_O 1TI4_I 1TI6_E 3DMR_A 4DMR_A 1H5N_C 1E5V_A ....
Probab=52.28 E-value=7.4 Score=40.54 Aligned_cols=67 Identities=24% Similarity=0.343 Sum_probs=41.4
Q ss_pred HHhccCCEEEEEccCCCcc-c-c-CcccHHHhcCCCeEEEECCCCCCCCCcccEEE--ECcHHHHH-HHHHHH
Q 012378 197 KHCKIADVVLCLGTSLQIT-P-A-CNLPLKCLRGGGKIVIVNLQKTPKDKKASLVI--HGFVDKVV-AGVMDL 263 (465)
Q Consensus 197 ~~~~~aDLlLvlGTSL~V~-P-a-~~Lp~~a~~~Ga~lViINl~~t~~d~~adl~I--~g~~devL-~~L~~~ 263 (465)
..+.++|++|++|+..... | . .++...++++|+++|.|++..+.....+|.+| +-..|-.| -.+++.
T Consensus 107 ~D~~~ad~il~~G~n~~~~~~~~~~~~~~~~~~~g~k~v~vdP~~t~~a~~ad~~i~i~PGtD~al~~a~~~~ 179 (432)
T PF00384_consen 107 EDIENADVILIWGANPAESHPHLNARFRKAARKRGAKLVVVDPRRTPTAAKADEWIPIRPGTDAALALAMAHV 179 (432)
T ss_dssp HGGGH-SEEEEES--HHHHSHHHHHHHHHHHHHCTSEEEEEESSB-HHGGGTSEEEEE-TTTHHHHHHHHHHH
T ss_pred ceeeccceEEEcccCccccccccccccccccccCCcceEEEEeccchhhhhccccccccccccHHhhcccccc
Confidence 3678899999999875532 2 1 23445577889999999999987666666655 44455444 344443
No 132
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=52.18 E-value=14 Score=42.79 Aligned_cols=55 Identities=18% Similarity=0.168 Sum_probs=36.8
Q ss_pred HHHhccCCEEEEEccCCCc-cccC--cccHHHhcCCCeEEEECCCCCCC-CCcccEEEE
Q 012378 196 EKHCKIADVVLCLGTSLQI-TPAC--NLPLKCLRGGGKIVIVNLQKTPK-DKKASLVIH 250 (465)
Q Consensus 196 ~~~~~~aDLlLvlGTSL~V-~Pa~--~Lp~~a~~~Ga~lViINl~~t~~-d~~adl~I~ 250 (465)
.+.+.++|++|++|+.... .|.. ++-..++++|+++|.||+-.+.. ...+|.++.
T Consensus 371 ~~Die~ad~ill~G~N~~~~~P~~~~ri~~a~k~~GakiivIDPr~t~t~a~~Ad~~l~ 429 (797)
T PRK07860 371 YADLEKAPAVLLVGFEPEEESPIVFLRLRKAARKHGLKVYSIAPFATRGLEKMGGTLLR 429 (797)
T ss_pred HHHHHhCCEEEEEeCChhhhhHHHHHHHHHHHHhCCCEEEEECCCCchhhhhhhhceec
Confidence 4567789999999997654 4532 22122346899999999987763 344555553
No 133
>cd02758 MopB_Tetrathionate-Ra The MopB_Tetrathionate-Ra CD contains tetrathionate reductase, subunit A, (TtrA) and other related proteins. The Salmonella enterica tetrathionate reductase catalyses the reduction of trithionate but not sulfur or thiosulfate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=51.40 E-value=14 Score=42.50 Aligned_cols=55 Identities=16% Similarity=0.039 Sum_probs=38.9
Q ss_pred HHhccCCEEEEEccCCCc-cc-c---CcccHHHh-cCCCeEEEECCCCCCCC---CcccEEEEC
Q 012378 197 KHCKIADVVLCLGTSLQI-TP-A---CNLPLKCL-RGGGKIVIVNLQKTPKD---KKASLVIHG 251 (465)
Q Consensus 197 ~~~~~aDLlLvlGTSL~V-~P-a---~~Lp~~a~-~~Ga~lViINl~~t~~d---~~adl~I~g 251 (465)
..+.+||++|++|+.... .| . .+....++ ++|+++|.|++-.|... ..+|++|.=
T Consensus 207 ~D~~~ad~il~~GsN~a~~~~~~~~~~~~l~~a~~~~G~KlVVVDPr~t~ta~~~~~Ad~wlpI 270 (735)
T cd02758 207 PDFDNAEFALFIGTSPAQAGNPFKRQARRLAEARTEGNFKYVVVDPVLPNTTSAAGENIRWVPI 270 (735)
T ss_pred cCHhhCcEEEEeCCCHHHhCCCcchHHHHHHHHHHhCCCEEEEECCCCCccccccccCCEEECC
Confidence 456789999999998654 23 2 12222344 47899999999998876 778877643
No 134
>cd02773 MopB_Res-Cmplx1_Nad11 MopB_Res_Cmplx1_Nad11: The second domain of the Nad11/75-kDa subunit of the NADH-quinone oxidoreductase/respiratory complex I/NADH dehydrogenase-1(NDH-1) of eukaryotes and the Nqo3/G subunit of alphaproteobacteria NDH-1. The NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75 kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Paracoccus denitrificans, this subunit is encoded by the nqo3 gene, and is part of the 14 distinct subunits constituting the 'minimal' functional enzyme. The Nad11/Nqo3 subunit is made
Probab=50.87 E-value=24 Score=36.55 Aligned_cols=51 Identities=27% Similarity=0.294 Sum_probs=33.6
Q ss_pred HHhccCCEEEEEccCCCc-cccCcc-cHHH-hcCCCeEEEECCCCCCCCCcccE
Q 012378 197 KHCKIADVVLCLGTSLQI-TPACNL-PLKC-LRGGGKIVIVNLQKTPKDKKASL 247 (465)
Q Consensus 197 ~~~~~aDLlLvlGTSL~V-~Pa~~L-p~~a-~~~Ga~lViINl~~t~~d~~adl 247 (465)
..+.+||++|++|+-... .|.... ...+ +++|+++|.|++..+.....+++
T Consensus 141 ~di~~ad~il~~G~N~~~~~p~~~~~~~~~~~~~g~kli~idp~~~~t~~~~~~ 194 (375)
T cd02773 141 AGIEEADAVLLVGTNPRFEAPVLNARIRKAWLHGGLKVGVIGPPVDLTYDYDHL 194 (375)
T ss_pred HHHhhCCEEEEEcCCcchhchHHHHHHHHHHHcCCCEEEEEcCccccchhhccC
Confidence 456889999999997743 353322 1223 34689999999887665444443
No 135
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=50.28 E-value=10 Score=33.42 Aligned_cols=25 Identities=32% Similarity=0.567 Sum_probs=20.9
Q ss_pred HHHHHHHHHhCCcEEEEecCCcccc
Q 012378 34 IEQLAKLIQKSKHLVVFTGAGISTS 58 (465)
Q Consensus 34 i~~la~lIk~Ak~IVVlTGAGISta 58 (465)
|++++++|++|++.++++|.|+..+
T Consensus 1 i~~~~~~L~~A~rP~il~G~g~~~~ 25 (137)
T PF00205_consen 1 IDEAADLLSSAKRPVILAGRGARRS 25 (137)
T ss_dssp HHHHHHHHHH-SSEEEEE-HHHHHT
T ss_pred CHHHHHHHHhCCCEEEEEcCCcChh
Confidence 5789999999999999999999855
No 136
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=50.24 E-value=10 Score=24.72 Aligned_cols=24 Identities=50% Similarity=1.046 Sum_probs=16.2
Q ss_pred ccCCCCCCcccchhhhhhhccccCCCCCCCCCCCCcc
Q 012378 140 EACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKL 176 (465)
Q Consensus 140 ~~C~~C~~~y~rd~~~~~i~~~~~~P~C~~p~CGg~L 176 (465)
..|++||+....+ ...| |.||..|
T Consensus 3 ~~Cp~Cg~~~~~~-----------~~fC--~~CG~~L 26 (26)
T PF13248_consen 3 MFCPNCGAEIDPD-----------AKFC--PNCGAKL 26 (26)
T ss_pred CCCcccCCcCCcc-----------cccC--hhhCCCC
Confidence 5799999854322 3468 7898764
No 137
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=50.23 E-value=14 Score=34.18 Aligned_cols=54 Identities=15% Similarity=0.159 Sum_probs=38.6
Q ss_pred hccCCEEEEEccCCCccccCcccHHHhcCCCeEEEE-CCCCCCCCCcccEEEECc
Q 012378 199 CKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIV-NLQKTPKDKKASLVIHGF 252 (465)
Q Consensus 199 ~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViI-Nl~~t~~d~~adl~I~g~ 252 (465)
+.+-|++|++.-|..+.....+...++++|+++|.| +....+..+.+|+++...
T Consensus 70 ~~~~Dv~I~iS~sG~t~~~i~~~~~ak~~g~~ii~IT~~~~s~la~~ad~~l~~~ 124 (179)
T TIGR03127 70 IKKGDLLIAISGSGETESLVTVAKKAKEIGATVAAITTNPESTLGKLADVVVEIP 124 (179)
T ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEEeC
Confidence 456788888888888877777777788888887766 445566666666666443
No 138
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=50.17 E-value=32 Score=31.82 Aligned_cols=56 Identities=16% Similarity=0.025 Sum_probs=44.9
Q ss_pred HHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEE-CCCCCCCCCcccEEEECc
Q 012378 197 KHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIV-NLQKTPKDKKASLVIHGF 252 (465)
Q Consensus 197 ~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViI-Nl~~t~~d~~adl~I~g~ 252 (465)
..+.+-|++|++-.|..+.-.......++++|+++|.| |....++.+.+|+.|.-.
T Consensus 97 ~~~~~~Dv~I~iS~SG~t~~~i~~~~~ak~~Ga~vI~IT~~~~s~La~~aD~~l~~~ 153 (177)
T cd05006 97 ALGQPGDVLIGISTSGNSPNVLKALEAAKERGMKTIALTGRDGGKLLELADIEIHVP 153 (177)
T ss_pred HhCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCCEEEEeC
Confidence 34678899999999999888777778899999998877 556677778888877643
No 139
>TIGR00354 polC DNA polymerase, archaeal type II, large subunit. This model represents the large subunit, DP2, of a two subunit novel Archaeal replicative DNA polymerase first characterized for Pyrococcus furiosus. Structure of DP2 appears to be organized as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit.
Probab=50.11 E-value=7.3 Score=45.67 Aligned_cols=39 Identities=38% Similarity=0.674 Sum_probs=29.2
Q ss_pred EcCCCCcc-----ccCCCCCCcccchhhhhhhccccCCCCCCCCCCCCcccCcEE
Q 012378 132 ELHGNSFM-----EACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLRDTVL 181 (465)
Q Consensus 132 ELHGnl~~-----~~C~~C~~~y~rd~~~~~i~~~~~~P~C~~p~CGg~LrP~VV 181 (465)
.|-||+.. .+|++|+..|.|-. + .-+| |+|||.+-++|-
T Consensus 1000 Dl~GNLRaFsrQ~fRC~kC~~kYRR~P------L---~G~C--~kCGg~lilTV~ 1043 (1095)
T TIGR00354 1000 DIIGNLRAFSRQEVRCTKCNTKYRRIP------L---VGKC--LKCGNNLTLTVS 1043 (1095)
T ss_pred HhhhhHhhhhccceeecccCCccccCC------C---CCcc--cccCCeEEEEEe
Confidence 67799864 58999999985532 2 3479 799998887774
No 140
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=49.73 E-value=31 Score=32.78 Aligned_cols=60 Identities=12% Similarity=0.151 Sum_probs=38.5
Q ss_pred ccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCCCcccEEEEC-cHHHHHHHHHHH
Q 012378 200 KIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHG-FVDKVVAGVMDL 263 (465)
Q Consensus 200 ~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~~adl~I~g-~~devL~~L~~~ 263 (465)
.++||+|.+|+.. |..+......++-+++..|.++... .+.|++.+.. +-++++..|-+.
T Consensus 107 ~~~DlvlfvG~~~---~~~~~~l~~lk~f~~~~~~~~~~~y-~~~a~~s~~~~~~~~~~~~l~~l 167 (171)
T PRK00945 107 GNYDLVIFIGVTY---YYASQGLSALKHFSPLKTITIDRYY-HPNADMSFPNLSKEEYLEYLDEL 167 (171)
T ss_pred CCcCEEEEecCCc---hhHHHHHHHHhhcCCceEEEecCCc-CCCCceecCCCCHHHHHHHHHHH
Confidence 6899999999984 6565555555544555566655433 5667777632 456666665543
No 141
>PRK05580 primosome assembly protein PriA; Validated
Probab=49.66 E-value=37 Score=38.76 Aligned_cols=23 Identities=9% Similarity=0.172 Sum_probs=14.1
Q ss_pred hhhHHHHHhccCCEEEEEccCCC
Q 012378 191 EMNPAEKHCKIADVVLCLGTSLQ 213 (465)
Q Consensus 191 ~~~~A~~~~~~aDLlLvlGTSL~ 213 (465)
..+.+.+.+.+-+.=|+|||.+.
T Consensus 468 ~~~~~l~~f~~g~~~ILVgT~~i 490 (679)
T PRK05580 468 ALEQLLAQFARGEADILIGTQML 490 (679)
T ss_pred hHHHHHHHHhcCCCCEEEEChhh
Confidence 45556666665555556888763
No 142
>COG1379 PHP family phosphoesterase with a Zn ribbon [General function prediction only]
Probab=49.58 E-value=9.6 Score=39.82 Aligned_cols=141 Identities=23% Similarity=0.310 Sum_probs=73.5
Q ss_pred CCCCCCCcCCChHHHHHHHHHHHHHHHhCCcEEEEecCCccccCCCCCccCCC---cccccccCCCCCcc----cccccc
Q 012378 16 GNVGMAEFFDSPQILQEKIEQLAKLIQKSKHLVVFTGAGISTSCGIPDFRGPN---GIWTLQREGKPLPE----ASLPFH 88 (465)
Q Consensus 16 g~~g~~e~~d~~~~l~~ki~~la~lIk~Ak~IVVlTGAGIStaSGIPDFRg~~---GlW~~~~~~~~~p~----~~~~f~ 88 (465)
|..|.+-.|+|-..+-.+-+.+.+....+. |=+.==|+|+++-..|--..- -+-+.-++..+.|. +...|.
T Consensus 133 gL~gPaHaFtPwtslYk~~dSl~e~yg~a~--iDfvELGLSADtdmAD~I~el~~~pFLtNSDAHSp~phrLgREfn~f~ 210 (403)
T COG1379 133 GLIGPAHAFTPWTSLYKKYDSLKECYGDAM--IDFVELGLSADTDMADMIEELHRLPFLTNSDAHSPYPHRLGREFNQFE 210 (403)
T ss_pred cceecccccCccHHhhhhhchHHHHhCccc--hhHHHhccccCchHHHHHHHhccCCcccccccCCCchhhhhhhhheee
Confidence 355566667776666666555555554333 556667888888654322110 01111111111121 112233
Q ss_pred cCCCCHHHHHHHHHHHcCCceEEEeecccchhhhcCCCCCceEEcCCCCccccCCCCCCcccchhhhhhhccccCCCCCC
Q 012378 89 RAMPGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFRDFEVETIGLKETSRRCS 168 (465)
Q Consensus 89 ~a~Pn~~H~aLa~Le~~G~l~~VITQNIDgLH~rAG~p~~kViELHGnl~~~~C~~C~~~y~rd~~~~~i~~~~~~P~C~ 168 (465)
-..|+ ...|+.-.+ ++...=|+-|+ |+++ .-|-++.--|..|...|..+.... .--+|
T Consensus 211 v~~~s--F~~~r~Ai~-~~~g~~ivaNy-------GLdP-----~LGKY~~TAC~rC~t~y~le~A~~------~~wrC- 268 (403)
T COG1379 211 VEEIS--FEELRKAIK-GKDGCKIVANY-------GLDP-----RLGKYHLTACSRCYTRYSLEEAKS------LRWRC- 268 (403)
T ss_pred cccCC--HHHHHHHHh-cCCCceEEEec-------CcCc-----cccchhHHHHHHhhhccCcchhhh------hcccC-
Confidence 33343 444444333 22223355564 4432 257888899999998886543211 12479
Q ss_pred CCCCCCcccCcEE
Q 012378 169 DLKCGAKLRDTVL 181 (465)
Q Consensus 169 ~p~CGg~LrP~VV 181 (465)
|+|||.++-.|.
T Consensus 269 -pkCGg~ikKGV~ 280 (403)
T COG1379 269 -PKCGGKIKKGVS 280 (403)
T ss_pred -cccccchhhhHH
Confidence 899998876653
No 143
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=49.51 E-value=17 Score=40.63 Aligned_cols=56 Identities=23% Similarity=0.275 Sum_probs=38.2
Q ss_pred HHHhccCCEEEEEccCCCc-cccCc-ccHHHhcCC-CeEEEECCCCCCCCCcccEEEEC
Q 012378 196 EKHCKIADVVLCLGTSLQI-TPACN-LPLKCLRGG-GKIVIVNLQKTPKDKKASLVIHG 251 (465)
Q Consensus 196 ~~~~~~aDLlLvlGTSL~V-~Pa~~-Lp~~a~~~G-a~lViINl~~t~~d~~adl~I~g 251 (465)
...+.++|++|++|+.... .|... ....+.++| +++|.||+..+.....+|.++.-
T Consensus 357 ~~di~~ad~il~~G~N~~~s~p~~~~~i~~a~~~ggaklividpr~s~ta~~Ad~~l~i 415 (603)
T TIGR01973 357 LADIEEADLVLLVGADLRQEAPLLNLRLRKAVKKGGAKVALIGIEKWNLTYPANTNLVF 415 (603)
T ss_pred HHHHHhCCEEEEEccCchhhhHHHHHHHHHHHhcCCcEEEEECCccccchhhhccceee
Confidence 3456789999999987543 33221 113344444 89999999988887777776543
No 144
>cd02772 MopB_NDH-1_NuoG2 MopB_NDH-1_NuoG2: The second domain of the NuoG subunit of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1), found in beta- and gammaproteobacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evidence remains of a molybdopterin binding site, this protein domain belongs to t
Probab=48.32 E-value=24 Score=36.97 Aligned_cols=45 Identities=20% Similarity=0.273 Sum_probs=31.6
Q ss_pred HHHhccCCEEEEEccCCC-ccccC-cccHHHhcCCCeEEEECCCCCC
Q 012378 196 EKHCKIADVVLCLGTSLQ-ITPAC-NLPLKCLRGGGKIVIVNLQKTP 240 (465)
Q Consensus 196 ~~~~~~aDLlLvlGTSL~-V~Pa~-~Lp~~a~~~Ga~lViINl~~t~ 240 (465)
...+.++|++|++|+... ..|.. .....+.++|+++|.|++..+.
T Consensus 147 ~~di~~ad~il~~G~n~~~~~p~~~~~l~~a~~~g~k~i~idp~~~~ 193 (414)
T cd02772 147 IAEISELDRVLVIGSNLRKEHPLLAQRLRQAVKKGAKLSAINPADDD 193 (414)
T ss_pred HHHHHhCCEEEEECCCccccchHHHHHHHHHHHcCCEEEEEeCccch
Confidence 356788999999999754 23321 2224567789999999987654
No 145
>PRK04023 DNA polymerase II large subunit; Validated
Probab=48.02 E-value=8.6 Score=45.37 Aligned_cols=39 Identities=44% Similarity=0.706 Sum_probs=29.4
Q ss_pred EcCCCCcc-----ccCCCCCCcccchhhhhhhccccCCCCCCCCCCCCcccCcEE
Q 012378 132 ELHGNSFM-----EACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLRDTVL 181 (465)
Q Consensus 132 ELHGnl~~-----~~C~~C~~~y~rd~~~~~i~~~~~~P~C~~p~CGg~LrP~VV 181 (465)
.|-||+.. .+|++|+..|.|-. + .-+| |+|||.+-++|-
T Consensus 1025 Dl~GNLRaFsrQ~fRC~kC~~kYRR~P------L---~G~C--~kCGg~lilTVh 1068 (1121)
T PRK04023 1025 DLIGNLRAFSRQEFRCTKCGAKYRRPP------L---SGKC--PKCGGNLILTVH 1068 (1121)
T ss_pred hhhhhhhhhcccceeecccCcccccCC------C---CCcC--ccCCCeEEEEEe
Confidence 56799864 58999999986532 2 3479 799999888774
No 146
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=47.76 E-value=13 Score=25.49 Aligned_cols=25 Identities=36% Similarity=0.732 Sum_probs=17.2
Q ss_pred ccCCCCCCcccchhhhhhhccccCCCCCCCCCCCCc
Q 012378 140 EACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAK 175 (465)
Q Consensus 140 ~~C~~C~~~y~rd~~~~~i~~~~~~P~C~~p~CGg~ 175 (465)
.+|..||..|..+. ...+| |.||..
T Consensus 2 ~~C~~CGy~y~~~~---------~~~~C--P~Cg~~ 26 (33)
T cd00350 2 YVCPVCGYIYDGEE---------APWVC--PVCGAP 26 (33)
T ss_pred EECCCCCCEECCCc---------CCCcC--cCCCCc
Confidence 58999998874331 24478 789863
No 147
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=47.47 E-value=21 Score=30.61 Aligned_cols=56 Identities=14% Similarity=0.087 Sum_probs=42.7
Q ss_pred HhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEE-CCCCCCCCCcccEEEECcH
Q 012378 198 HCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIV-NLQKTPKDKKASLVIHGFV 253 (465)
Q Consensus 198 ~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViI-Nl~~t~~d~~adl~I~g~~ 253 (465)
.+.+-|++|++-.|............++.+|+++|.| |...++..+.+|+.|.-.+
T Consensus 43 ~~~~~d~~I~iS~sG~t~e~~~~~~~a~~~g~~vi~iT~~~~s~la~~ad~~l~~~~ 99 (126)
T cd05008 43 LLDEDTLVIAISQSGETADTLAALRLAKEKGAKTVAITNVVGSTLAREADYVLYLRA 99 (126)
T ss_pred CCCCCcEEEEEeCCcCCHHHHHHHHHHHHcCCeEEEEECCCCChHHHhCCEEEEecC
Confidence 3678899999999998887777778888999998765 4445666667777776544
No 148
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=47.46 E-value=12 Score=23.98 Aligned_cols=23 Identities=43% Similarity=1.058 Sum_probs=14.6
Q ss_pred cCCCCCCcccchhhhhhhccccCCCCCCCCCCCCcc
Q 012378 141 ACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKL 176 (465)
Q Consensus 141 ~C~~C~~~y~rd~~~~~i~~~~~~P~C~~p~CGg~L 176 (465)
.|++||++...+ ...| |.||..|
T Consensus 1 ~Cp~CG~~~~~~-----------~~fC--~~CG~~l 23 (23)
T PF13240_consen 1 YCPNCGAEIEDD-----------AKFC--PNCGTPL 23 (23)
T ss_pred CCcccCCCCCCc-----------Ccch--hhhCCcC
Confidence 488898765322 2358 6888754
No 149
>cd02764 MopB_PHLH The MopB_PHLH CD includes a group of related uncharacterized putative hydrogenase-like homologs (PHLH) of molybdopterin binding (MopB) proteins. This CD is of the PHLH region homologous to the catalytic molybdopterin-binding subunit of MopB homologs.
Probab=46.65 E-value=31 Score=37.72 Aligned_cols=54 Identities=13% Similarity=0.056 Sum_probs=37.6
Q ss_pred HhccCCEEEEEccCCCcc---ccC--cccHHHhcCC-----CeEEEECCCCCCCCCcccEEEEC
Q 012378 198 HCKIADVVLCLGTSLQIT---PAC--NLPLKCLRGG-----GKIVIVNLQKTPKDKKASLVIHG 251 (465)
Q Consensus 198 ~~~~aDLlLvlGTSL~V~---Pa~--~Lp~~a~~~G-----a~lViINl~~t~~d~~adl~I~g 251 (465)
.+.++|++|++|+..... |.. +....++++| +++|.|++..+.....+|.+|.-
T Consensus 193 D~~~a~~il~~G~N~~~~~~~~~~~~~~~~~ar~~g~~~~g~kliviDPr~s~ta~~Ad~~l~i 256 (524)
T cd02764 193 DFDKAEVIVSIDADFLGSWISAIRHRHDFAAKRRLGAEEPMSRLVAAESVYTLTGANADVRLAI 256 (524)
T ss_pred ChhHCcEEEEECCcccccCcccchhHHHHHHhccccCCCCceeEEEEecCCCchhhhhcceecc
Confidence 467899999999986543 211 1112334444 49999999999888888877743
No 150
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=46.36 E-value=9.2 Score=46.12 Aligned_cols=39 Identities=38% Similarity=0.667 Sum_probs=29.4
Q ss_pred EcCCCCcc-----ccCCCCCCcccchhhhhhhccccCCCCCCCCCCCCcccCcEE
Q 012378 132 ELHGNSFM-----EACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLRDTVL 181 (465)
Q Consensus 132 ELHGnl~~-----~~C~~C~~~y~rd~~~~~i~~~~~~P~C~~p~CGg~LrP~VV 181 (465)
.|-||+.. .+|.+|+..|.|-. + .-+| |+|||.+-++|-
T Consensus 1241 Dl~GNLraFsrQ~~RC~kC~~kyRR~P------L---~G~C--~kCGg~iilTv~ 1284 (1337)
T PRK14714 1241 DLIGNLRAFSRQEFRCLKCGTKYRRMP------L---AGKC--RKCGGRIILTVH 1284 (1337)
T ss_pred hhhhhhhhhhccceeecccCcccccCC------C---CCcc--cccCCeEEEEEe
Confidence 67799864 58999999986532 2 3479 789998887774
No 151
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=46.34 E-value=21 Score=31.03 Aligned_cols=57 Identities=16% Similarity=0.082 Sum_probs=44.6
Q ss_pred HhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEE-CCCCCCCCCcccEEEECcHH
Q 012378 198 HCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIV-NLQKTPKDKKASLVIHGFVD 254 (465)
Q Consensus 198 ~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViI-Nl~~t~~d~~adl~I~g~~d 254 (465)
.+.+-|++|++-.|..+.-.......++++|+++|.| |....+..+.+|+.+.-.++
T Consensus 44 ~~~~~dl~I~iS~SG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la~~ad~~l~~~~~ 101 (120)
T cd05710 44 RLTEKSVVILASHSGNTKETVAAAKFAKEKGATVIGLTDDEDSPLAKLADYVIVYGFE 101 (120)
T ss_pred cCCCCcEEEEEeCCCCChHHHHHHHHHHHcCCeEEEEECCCCCcHHHhCCEEEEccCC
Confidence 4567799999999998887777777888999986655 45566677788888877666
No 152
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=46.32 E-value=7.6 Score=27.53 Aligned_cols=30 Identities=33% Similarity=0.867 Sum_probs=19.4
Q ss_pred ccCCCCCCcccchhhhhhhccccCCCCCCCCCCCCcc
Q 012378 140 EACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKL 176 (465)
Q Consensus 140 ~~C~~C~~~y~rd~~~~~i~~~~~~P~C~~p~CGg~L 176 (465)
..|..||+.|...+... ...-.| ..||+.|
T Consensus 2 r~C~~Cg~~Yh~~~~pP-----~~~~~C--d~cg~~L 31 (36)
T PF05191_consen 2 RICPKCGRIYHIEFNPP-----KVEGVC--DNCGGEL 31 (36)
T ss_dssp EEETTTTEEEETTTB-------SSTTBC--TTTTEBE
T ss_pred cCcCCCCCccccccCCC-----CCCCcc--CCCCCee
Confidence 46999999986554321 123478 4899865
No 153
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=46.22 E-value=11 Score=32.98 Aligned_cols=27 Identities=33% Similarity=0.760 Sum_probs=17.0
Q ss_pred ccCCCCCCcccchhhhhhhccccCCCCCCCCCCCCc
Q 012378 140 EACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAK 175 (465)
Q Consensus 140 ~~C~~C~~~y~rd~~~~~i~~~~~~P~C~~p~CGg~ 175 (465)
-+|++||+.|..-.. .+ ..-| |+||+.
T Consensus 3 H~CtrCG~vf~~g~~--~i-----l~GC--p~CG~n 29 (112)
T COG3364 3 HQCTRCGEVFDDGSE--EI-----LSGC--PKCGCN 29 (112)
T ss_pred ceecccccccccccH--HH-----HccC--ccccch
Confidence 389999999865211 11 2247 788865
No 154
>COG1282 PntB NAD/NADP transhydrogenase beta subunit [Energy production and conversion]
Probab=46.01 E-value=29 Score=36.97 Aligned_cols=87 Identities=26% Similarity=0.332 Sum_probs=58.0
Q ss_pred cCcEEeCCCCCChh---hhhHHHHHhccCCEEEEEccCCCccccCc--------ccHHHhcCCCeEEEECCCC-----CC
Q 012378 177 RDTVLDWEDALPPK---EMNPAEKHCKIADVVLCLGTSLQITPACN--------LPLKCLRGGGKIVIVNLQK-----TP 240 (465)
Q Consensus 177 rP~VV~FGE~lp~~---~~~~A~~~~~~aDLlLvlGTSL~V~Pa~~--------Lp~~a~~~Ga~lViINl~~-----t~ 240 (465)
+-||++=+-.+|.+ +++..-+...++|++||+|..-.|.|+++ +|..- -..++.+++++.. ..
T Consensus 356 HMNVLLAEA~VpYd~v~emddIN~dF~~tDVvlVIGANDvvNPAA~~D~SPI~GMPiLe-V~KAk~viv~KRsM~sGyAG 434 (463)
T COG1282 356 HMNVLLAEAKVPYDIVLEMDEINDDFADTDVVLVIGANDVVNPAAQDDNSPIAGMPVLE-VWKAKTVIVFKRSMNSGYAG 434 (463)
T ss_pred chhhhhhhccCCHHHHhhHHhhcchhccccEEEEEccCCCCChhhccCCCCcCCCceee-eeccceEEEEeccccccccc
Confidence 45677766667765 34556678889999999999999987764 33111 1235566655432 22
Q ss_pred CC-----CcccEEEECcHHHHHHHHHHHh
Q 012378 241 KD-----KKASLVIHGFVDKVVAGVMDLL 264 (465)
Q Consensus 241 ~d-----~~adl~I~g~~devL~~L~~~L 264 (465)
.+ ...+.-+-||+.+.++++.+.|
T Consensus 435 v~N~LFy~d~T~MlFGDAKk~V~~i~k~l 463 (463)
T COG1282 435 VQNPLFYKDNTMMLFGDAKKSVDEILKAL 463 (463)
T ss_pred cCCcceeccCcEEEeccHHHHHHHHHhcC
Confidence 22 2466788999999999988754
No 155
>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only]
Probab=45.77 E-value=3.8 Score=38.18 Aligned_cols=79 Identities=25% Similarity=0.372 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHc----CCceEEEeecccchhhhcCCCCCceEEcCCCCccccCCCCCCcccchhhhhhhccccCCCCCCC
Q 012378 94 MTHMALVELEKA----GILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFRDFEVETIGLKETSRRCSD 169 (465)
Q Consensus 94 ~~H~aLa~Le~~----G~l~~VITQNIDgLH~rAG~p~~kViELHGnl~~~~C~~C~~~y~rd~~~~~i~~~~~~P~C~~ 169 (465)
.+|+-+-.+-+. |+....+-|.||||--..-++ -.+--..|+.+..+|. |+..|.+.-....+...+ .-+|
T Consensus 69 LaHl~ly~~~gr~~phg~ewk~lm~qV~~l~~~~~h~-~~~~~v~~~~~~Y~C~-C~q~~l~~RRhn~~~~g~-~YrC-- 143 (156)
T COG3091 69 LAHLHLYQEFGRYKPHGKEWKLLMQQVLGLRFCRTHQ-FEVQSVRRTTYPYRCQ-CQQHYLRIRRHNTVRRGE-VYRC-- 143 (156)
T ss_pred HHHHHHHHHcCCCCCCchhHHHHHHHhCCCCCCccch-HHHhhccccceeEEee-cCCccchhhhcccccccc-eEEe--
Confidence 457666555432 455567888999986555332 2355557788999999 998876543333332223 5689
Q ss_pred CCCCCccc
Q 012378 170 LKCGAKLR 177 (465)
Q Consensus 170 p~CGg~Lr 177 (465)
-+|+|.|.
T Consensus 144 ~~C~gkL~ 151 (156)
T COG3091 144 GKCGGKLV 151 (156)
T ss_pred ccCCceEE
Confidence 58999874
No 156
>KOG3954 consensus Electron transfer flavoprotein, alpha subunit [Energy production and conversion]
Probab=45.61 E-value=24 Score=36.05 Aligned_cols=58 Identities=21% Similarity=0.256 Sum_probs=44.4
Q ss_pred CEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCC-CCCCcccEEEECcHHHHHHHHHHHhc
Q 012378 203 DVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKT-PKDKKASLVIHGFVDKVVAGVMDLLN 265 (465)
Q Consensus 203 DLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t-~~d~~adl~I~g~~devL~~L~~~L~ 265 (465)
.|-|.+|.|..+.-.+.| +.-.-+|-||.++. |.-.-+|+-|.||.=+++|+|-+.|.
T Consensus 276 eLYiAvGisGAIQHLAGm-----KDSKvIvAINkDpdAPIFqvAD~GlvgDLfkiVPELtekL~ 334 (336)
T KOG3954|consen 276 ELYIAVGISGAIQHLAGM-----KDSKVIVAINKDPDAPIFQVADYGLVGDLFKIVPELTEKLP 334 (336)
T ss_pred ceEEEEeccHHHHHhhcC-----ccceEEEEecCCCCCCceeeecccchhhHHHHhHHHHHhcc
Confidence 388888888877655554 33345677999974 45567999999999999999998874
No 157
>PRK14990 anaerobic dimethyl sulfoxide reductase subunit A; Provisional
Probab=44.16 E-value=30 Score=39.94 Aligned_cols=56 Identities=11% Similarity=0.102 Sum_probs=39.1
Q ss_pred HHHhccCCEEEEEccCCCcc-ccC----cccHHHh-cCCCeEEEECCCCCCCC-CcccEEEEC
Q 012378 196 EKHCKIADVVLCLGTSLQIT-PAC----NLPLKCL-RGGGKIVIVNLQKTPKD-KKASLVIHG 251 (465)
Q Consensus 196 ~~~~~~aDLlLvlGTSL~V~-Pa~----~Lp~~a~-~~Ga~lViINl~~t~~d-~~adl~I~g 251 (465)
...+.++|++|++|+...+. |.. .....++ ++|+++|.|++..+... ..+|.+|.-
T Consensus 226 ~~D~~~ad~il~~G~N~~~t~~~~~~~~~~~~~a~~~~G~klivIDPr~t~taa~~AD~~l~i 288 (814)
T PRK14990 226 PSDIENSKLVVLFGNNPGETRMSGGGVTYYLEQARQKSNARMIIIDPRYTDTGAGREDEWIPI 288 (814)
T ss_pred HHHHhhCCEEEEECCChHHhcCCCCcHHHHHHHHHHHCCCeEEEECCCCCCcccccCCeEECC
Confidence 44567899999999986543 321 1222344 57999999999998875 468877644
No 158
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=43.45 E-value=43 Score=42.21 Aligned_cols=64 Identities=11% Similarity=0.129 Sum_probs=43.0
Q ss_pred HHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHH
Q 012378 197 KHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMD 262 (465)
Q Consensus 197 ~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~--~adl~I~g~~devL~~L~~ 262 (465)
..+.++|++|++|+.+.-......... ... ..+|.|+.++...+. ..++.|.+|+..++..|.+
T Consensus 594 ~~~~~aDlVl~iG~rl~s~~~t~~~~~-~~~-~~~I~ID~d~~~i~~~~~~~~~i~~D~~~~l~~L~~ 659 (1655)
T PLN02980 594 RNWIQFDVVIQIGSRITSKRVSQMLEK-CFP-FSYILVDKHPCRHDPSHLVTHRVQSNIVQFADCLLK 659 (1655)
T ss_pred hccCCCCEEEEeCCccccHHHHHHHHh-CCC-CeEEEECCCCCccCCcccceEEEEeCHHHHHHHhhh
Confidence 446789999999999752211111100 111 358899998877664 4578999999999887753
No 159
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=42.95 E-value=15 Score=25.92 Aligned_cols=32 Identities=41% Similarity=0.723 Sum_probs=20.2
Q ss_pred ccCCCCCCcccchhhhhhhccccCCCCCCCCCCCCc
Q 012378 140 EACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAK 175 (465)
Q Consensus 140 ~~C~~C~~~y~rd~~~~~i~~~~~~P~C~~p~CGg~ 175 (465)
..|++|+..|.-+.. .++.+..--+| ++|+..
T Consensus 3 i~Cp~C~~~y~i~d~--~ip~~g~~v~C--~~C~~~ 34 (36)
T PF13717_consen 3 ITCPNCQAKYEIDDE--KIPPKGRKVRC--SKCGHV 34 (36)
T ss_pred EECCCCCCEEeCCHH--HCCCCCcEEEC--CCCCCE
Confidence 579999998865432 23333333478 688864
No 160
>TIGR02166 dmsA_ynfE anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family. Members of this family include known and probable dimethyl sulfoxide reductase (DMSO reductase) A chains. In E. coli, dmsA encodes the canonical anaerobic DMSO reductase A chain. The paralog ynfE, as part of ynfFGH expressed from a multicopy plasmid, could complement a dmsABC deletion, suggesting a similar function and some overlap in specificity, although YnfE could not substitute for DmsA in a mixed complex.
Probab=42.89 E-value=27 Score=40.18 Aligned_cols=54 Identities=9% Similarity=0.120 Sum_probs=37.6
Q ss_pred HHhccCCEEEEEccCCCcc-c----c-CcccHHHhcCCCeEEEECCCCCCCC-CcccEEEE
Q 012378 197 KHCKIADVVLCLGTSLQIT-P----A-CNLPLKCLRGGGKIVIVNLQKTPKD-KKASLVIH 250 (465)
Q Consensus 197 ~~~~~aDLlLvlGTSL~V~-P----a-~~Lp~~a~~~Ga~lViINl~~t~~d-~~adl~I~ 250 (465)
..+.+||++|++|+..... | . ..+...+.++|+++|.|++..+..- ..+|.+|.
T Consensus 210 ~D~~~a~~il~~G~N~~~s~~~~~~~~~~~~~~~~~~G~kiivvDPr~t~taa~~Ad~~l~ 270 (797)
T TIGR02166 210 DDIENSKLVVMFGNNPAETRMSGGGQTYYFLQALEKSNARVIVIDPRYTDTVAGREDEWIP 270 (797)
T ss_pred HHHHhCCEEEEECCCHHHhcCCCcchHHHHHHHHHHCCCeEEEECCCCCccchhcCCEEEC
Confidence 4567899999999986543 3 1 1222223468999999999988764 46787664
No 161
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=42.14 E-value=34 Score=34.40 Aligned_cols=59 Identities=17% Similarity=0.105 Sum_probs=48.0
Q ss_pred HHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCC-CCCCCCcccEEEECc
Q 012378 194 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQ-KTPKDKKASLVIHGF 252 (465)
Q Consensus 194 ~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~-~t~~d~~adl~I~g~ 252 (465)
.....+..-|++|++.-|..+.-.......++++|+++|.|--. .+|..+.+|+++...
T Consensus 170 ~~~~~~~~~Dv~i~iS~sG~t~e~i~~a~~ak~~ga~vIaiT~~~~spla~~Ad~~L~~~ 229 (281)
T COG1737 170 MQLALLTPGDVVIAISFSGYTREIVEAAELAKERGAKVIAITDSADSPLAKLADIVLLVP 229 (281)
T ss_pred HHHHhCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEEEEcCCCCCchhhhhceEEecc
Confidence 35567889999999999998877777778899999998887655 778888888887763
No 162
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=40.74 E-value=15 Score=25.89 Aligned_cols=32 Identities=25% Similarity=0.589 Sum_probs=20.2
Q ss_pred ccCCCCCCcccchhhhhhhccccCCCCCCCCCCCCc
Q 012378 140 EACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAK 175 (465)
Q Consensus 140 ~~C~~C~~~y~rd~~~~~i~~~~~~P~C~~p~CGg~ 175 (465)
.+|++|+..|.-+.+ .++....--+| ++|+..
T Consensus 3 i~CP~C~~~f~v~~~--~l~~~~~~vrC--~~C~~~ 34 (37)
T PF13719_consen 3 ITCPNCQTRFRVPDD--KLPAGGRKVRC--PKCGHV 34 (37)
T ss_pred EECCCCCceEEcCHH--HcccCCcEEEC--CCCCcE
Confidence 589999998854432 23333334478 688864
No 163
>PRK07591 threonine synthase; Validated
Probab=40.63 E-value=15 Score=39.20 Aligned_cols=28 Identities=29% Similarity=0.553 Sum_probs=19.9
Q ss_pred ccccCCCCCCcccchhhhhhhccccCCCCCCCCCCCCccc
Q 012378 138 FMEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLR 177 (465)
Q Consensus 138 ~~~~C~~C~~~y~rd~~~~~i~~~~~~P~C~~p~CGg~Lr 177 (465)
..++|..||++|..+. . .+| |.||+.|.
T Consensus 17 ~~l~C~~Cg~~~~~~~---------~-~~C--~~cg~~l~ 44 (421)
T PRK07591 17 VALKCRECGAEYPLGP---------I-HVC--EECFGPLE 44 (421)
T ss_pred eEEEeCCCCCcCCCCC---------C-ccC--CCCCCeEE
Confidence 4589999999885331 1 478 78988764
No 164
>COG2331 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.38 E-value=16 Score=30.45 Aligned_cols=41 Identities=22% Similarity=0.516 Sum_probs=24.9
Q ss_pred ccccCCCCCCcccchhhhhhhccccCCCCCCCCCCCCccc-----CcEEeCC
Q 012378 138 FMEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLR-----DTVLDWE 184 (465)
Q Consensus 138 ~~~~C~~C~~~y~rd~~~~~i~~~~~~P~C~~p~CGg~Lr-----P~VV~FG 184 (465)
....|..|+..+. .+..+...+ .-.| |.||+.|| +.|+|=|
T Consensus 11 Y~Y~c~~cg~~~d---vvq~~~ddp-lt~c--e~c~a~~kk~l~~vgi~fKG 56 (82)
T COG2331 11 YSYECTECGNRFD---VVQAMTDDP-LTTC--EECGARLKKLLNAVGIVFKG 56 (82)
T ss_pred eEEeecccchHHH---HHHhcccCc-cccC--hhhChHHHHhhccceEEEec
Confidence 4568999998652 233333222 3368 78999864 6666544
No 165
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=40.16 E-value=43 Score=39.22 Aligned_cols=69 Identities=14% Similarity=0.101 Sum_probs=42.5
Q ss_pred HHHhccCCEEEEEccCCCc-cccCcc-cHHHh-cCCCeEEEECCCCCCCC-C--cccEEE--ECcHH-HHHHHHHHHh
Q 012378 196 EKHCKIADVVLCLGTSLQI-TPACNL-PLKCL-RGGGKIVIVNLQKTPKD-K--KASLVI--HGFVD-KVVAGVMDLL 264 (465)
Q Consensus 196 ~~~~~~aDLlLvlGTSL~V-~Pa~~L-p~~a~-~~Ga~lViINl~~t~~d-~--~adl~I--~g~~d-evL~~L~~~L 264 (465)
.+.+.++|++|++|+-+.. .|.... ...|. ++|+++|.|++-.+..- . .+++.+ .-..+ .++-.|++.+
T Consensus 365 l~DI~~AD~IlviGsN~~e~hPvl~~~I~~A~k~~gaklIvidPr~~~~~~~~a~~~~~l~~~PGtd~all~~ll~~i 442 (819)
T PRK08493 365 LEDIKTSDFVVVAGSALKTDNPLLRYAINNALKMNKASGLYFHPIKDNVIANLSKNFFCITHEVGAEEIILYFLLKKF 442 (819)
T ss_pred HHHHhhCCEEEEECCChhhhCHHHHHHHHHHHHhCCCeEEEEecCCchhhhhhhhcceEeecCCCcHHHHHHHHHHHH
Confidence 4557789999999997653 564332 23453 48999999988876652 2 244555 33333 3445555544
No 166
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=39.96 E-value=54 Score=37.92 Aligned_cols=10 Identities=30% Similarity=1.082 Sum_probs=7.6
Q ss_pred CCCCCCCCCCCc
Q 012378 164 SRRCSDLKCGAK 175 (465)
Q Consensus 164 ~P~C~~p~CGg~ 175 (465)
+-.| |.||+.
T Consensus 475 p~~C--p~Cgs~ 484 (730)
T COG1198 475 PQSC--PECGSE 484 (730)
T ss_pred CCCC--CCCCCC
Confidence 4478 899986
No 167
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=39.71 E-value=84 Score=27.29 Aligned_cols=66 Identities=17% Similarity=0.070 Sum_probs=37.8
Q ss_pred ccCCEEEEEccCCCccccCcccHHHhc--CCCeEEEECCCCCC------CCCcccEEEECcHHHHHHHHHHHhc
Q 012378 200 KIADVVLCLGTSLQITPACNLPLKCLR--GGGKIVIVNLQKTP------KDKKASLVIHGFVDKVVAGVMDLLN 265 (465)
Q Consensus 200 ~~aDLlLvlGTSL~V~Pa~~Lp~~a~~--~Ga~lViINl~~t~------~d~~adl~I~g~~devL~~L~~~L~ 265 (465)
.+.|++.+=..+.+...+..+....++ ...++|.-....+. .....|.++.|..+..+.+|++.+.
T Consensus 38 ~~pdiv~~S~~~~~~~~~~~~~~~ik~~~p~~~iv~GG~~~t~~p~~~~~~~~~D~vv~GEgE~~~~~l~~~l~ 111 (127)
T cd02068 38 LKPDVVGISLMTSAIYEALELAKIAKEVLPNVIVVVGGPHATFFPEEILEEPGVDFVVIGEGEETFLKLLEELE 111 (127)
T ss_pred cCCCEEEEeeccccHHHHHHHHHHHHHHCCCCEEEECCcchhhCHHHHhcCCCCCEEEECCcHHHHHHHHHHHH
Confidence 466766444333333333333333333 23455443333321 2345889999999999999998874
No 168
>COG1439 Predicted nucleic acid-binding protein, consists of a PIN domain and a Zn-ribbon module [General function prediction only]
Probab=39.45 E-value=12 Score=35.72 Aligned_cols=27 Identities=22% Similarity=0.578 Sum_probs=19.5
Q ss_pred ccccCCCCCCcccchhhhhhhccccCCCCCCCCCCCCccc
Q 012378 138 FMEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLR 177 (465)
Q Consensus 138 ~~~~C~~C~~~y~rd~~~~~i~~~~~~P~C~~p~CGg~Lr 177 (465)
+..+|..|++.|..+ .-.| |.||+.++
T Consensus 138 w~~rC~GC~~~f~~~-----------~~~C--p~CG~~~~ 164 (177)
T COG1439 138 WRLRCHGCKRIFPEP-----------KDFC--PICGSPLK 164 (177)
T ss_pred eeEEEecCceecCCC-----------CCcC--CCCCCceE
Confidence 456899999988521 2368 79999864
No 169
>TIGR01580 narG respiratory nitrate reductase, alpha subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the alpha subunit for nitrate reductase I (narG) and nitrate reductase II (narZ) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model The seed members used to make the model include Nitrate reductases from Pseudomonas fluorescens, E.coli and B.subtilis. All seed members are experimentally characterized. Some unpublished nitrate reductases, that are shorter sequences, and probably fragments fall in between the noise and trusted cutoffs. P
Probab=39.41 E-value=34 Score=41.61 Aligned_cols=61 Identities=16% Similarity=0.141 Sum_probs=44.9
Q ss_pred hccCCEEEEEccCCCcc--ccCcccHHHhcCCCeEEEECCCCCCCCCcccEEEE--CcHHHHHHH
Q 012378 199 CKIADVVLCLGTSLQIT--PACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIH--GFVDKVVAG 259 (465)
Q Consensus 199 ~~~aDLlLvlGTSL~V~--Pa~~Lp~~a~~~Ga~lViINl~~t~~d~~adl~I~--g~~devL~~ 259 (465)
+.+++++|+.|+..... |.+.+...++.+|+++|.|.+..+.....+|.+|. -..|-.|..
T Consensus 243 ~~nS~~II~WGsN~~~T~~p~a~~l~eAr~rGaKvVVVDPr~t~tA~~AD~WLpIrPGTD~ALaL 307 (1235)
T TIGR01580 243 WYNSSYIIAWGSNVPQTRTPDAHFFTEVRYKGTKTVAITPDYAEIAKLCDLWLAPKQGTDAALAL 307 (1235)
T ss_pred hhcCCEEEEECCChhhhcchhHHHHHHHHHcCCeEEEEcCCCChhhHhhCEEeCCCCChHHHHHH
Confidence 45899999999985443 44444456788999999999999888778887664 445555543
No 170
>PRK13532 nitrate reductase catalytic subunit; Provisional
Probab=39.02 E-value=35 Score=39.68 Aligned_cols=53 Identities=13% Similarity=0.114 Sum_probs=36.7
Q ss_pred HHhccCCEEEEEccCCCc-ccc--CcccHHHh--cCCCeEEEECCCCCCCCCcccEEEE
Q 012378 197 KHCKIADVVLCLGTSLQI-TPA--CNLPLKCL--RGGGKIVIVNLQKTPKDKKASLVIH 250 (465)
Q Consensus 197 ~~~~~aDLlLvlGTSL~V-~Pa--~~Lp~~a~--~~Ga~lViINl~~t~~d~~adl~I~ 250 (465)
+.+.+||++|++|+.... .|. .++. .++ ++|+++|.|++-.+.....+|.+|.
T Consensus 202 ~Di~~a~~il~~G~Np~~~~p~~~~~i~-~a~~~~~G~kiiviDPr~t~ta~~ad~~l~ 259 (830)
T PRK13532 202 DDIEAADAFVLWGSNMAEMHPILWSRVT-DRRLSNPDVKVAVLSTFEHRSFELADNGII 259 (830)
T ss_pred HHHHhCCEEEEECCCchhcCcHHHHHHH-HHHhcCCCCeEEEECCCCCchhHhcCeeec
Confidence 356899999999997543 232 1221 222 4799999999988877667776653
No 171
>PRK13938 phosphoheptose isomerase; Provisional
Probab=38.43 E-value=47 Score=31.97 Aligned_cols=59 Identities=14% Similarity=0.045 Sum_probs=44.1
Q ss_pred HHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECC-CCCCCCCcccEEEECcH
Q 012378 195 AEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNL-QKTPKDKKASLVIHGFV 253 (465)
Q Consensus 195 A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl-~~t~~d~~adl~I~g~~ 253 (465)
....+.+-|++|++-.|..+.-.......+++.|+++|.|-- ...+..+.+|+.|.-..
T Consensus 107 ~~~~~~~~DllI~iS~SG~t~~vi~a~~~Ak~~G~~vI~iT~~~~s~La~~aD~~l~v~~ 166 (196)
T PRK13938 107 LEGSARPGDTLFAISTSGNSMSVLRAAKTARELGVTVVAMTGESGGQLAEFADFLINVPS 166 (196)
T ss_pred HHhcCCCCCEEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCChhhhhCCEEEEeCC
Confidence 335567889999999998888777777788999999877654 45566667887775433
No 172
>PRK07586 hypothetical protein; Validated
Probab=38.00 E-value=93 Score=33.80 Aligned_cols=71 Identities=10% Similarity=-0.013 Sum_probs=0.0
Q ss_pred eCCCCCChhhhhHHHHHhccCCEEEEEccCCC--ccccCcccHHHhcCCCeEEEECCCCCCCCCcccEEEECcHHHHHHH
Q 012378 182 DWEDALPPKEMNPAEKHCKIADVVLCLGTSLQ--ITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVVAG 259 (465)
Q Consensus 182 ~FGE~lp~~~~~~A~~~~~~aDLlLvlGTSL~--V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~~adl~I~g~~devL~~ 259 (465)
.|.+..+......+.+.+++|||+|+||+.+. ......-+.........++.++... +|+..+|+.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~aDlvl~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~d~~~~l~~ 310 (514)
T PRK07586 243 RPAVERLPYFAEQALAQLAGVRHLVLVGAKAPVAFFAYPGKPSRLVPEGCEVHTLAGPG------------EDAAAALEA 310 (514)
T ss_pred CCCcccccchHHHHHHHHhcCCEEEEECCCCcccccccCCCccccCCCCceEEEECCCc------------ccHHHHHHH
Q ss_pred HHHHh
Q 012378 260 VMDLL 264 (465)
Q Consensus 260 L~~~L 264 (465)
|.+.|
T Consensus 311 L~~~l 315 (514)
T PRK07586 311 LADAL 315 (514)
T ss_pred HHHhh
No 173
>PRK12474 hypothetical protein; Provisional
Probab=36.96 E-value=95 Score=33.89 Aligned_cols=70 Identities=11% Similarity=0.037 Sum_probs=0.0
Q ss_pred CCCCCChhhhhHHHHHhccCCEEEEEccC--CCccccCcccHHHhcCCCeEEEECCCCCCCCCcccEEEECcHHHHHHHH
Q 012378 183 WEDALPPKEMNPAEKHCKIADVVLCLGTS--LQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVVAGV 260 (465)
Q Consensus 183 FGE~lp~~~~~~A~~~~~~aDLlLvlGTS--L~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~~adl~I~g~~devL~~L 260 (465)
|.|..++.....+.+.+++|||+|+||+. +...-...-+........+++.++... +|+.++++.|
T Consensus 248 ~~~~~~~~~~~~~~~~~~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------------~d~~~~l~~L 315 (518)
T PRK12474 248 VPIERIPYFHEQITAFLKDVEQLVLVGAKPPVSFFAYPGKPSWGAPPGCEIVYLAQPD------------EDLAQALQDL 315 (518)
T ss_pred CCCcccccchHHHHHHHhhCCEEEEECCCCCccccccCCCccccCCCCCEEEEECCCC------------cCHHHHHHHH
Q ss_pred HHHh
Q 012378 261 MDLL 264 (465)
Q Consensus 261 ~~~L 264 (465)
.+.|
T Consensus 316 ~~~l 319 (518)
T PRK12474 316 ADAV 319 (518)
T ss_pred HHhc
No 174
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=36.48 E-value=54 Score=36.44 Aligned_cols=42 Identities=29% Similarity=0.396 Sum_probs=35.7
Q ss_pred CCCCCCCcCCChHHHHHHHHHHHHHHHhCCcEEEEecCCccc
Q 012378 16 GNVGMAEFFDSPQILQEKIEQLAKLIQKSKHLVVFTGAGIST 57 (465)
Q Consensus 16 g~~g~~e~~d~~~~l~~ki~~la~lIk~Ak~IVVlTGAGISt 57 (465)
+++-......+++.+++-++.++++|.+||+.+|++|+.+|.
T Consensus 181 ~Pl~~~~~~sd~e~~~e~i~~i~~lI~~ak~p~ILad~~~~r 222 (557)
T COG3961 181 TPLDLQLKTSDPEALSEVIDTIAELINKAKKPVILADALVSR 222 (557)
T ss_pred CccccccCCCCHHHHHHHHHHHHHHHhccCCcEEecchhhhh
Confidence 455555556778889999999999999999999999999885
No 175
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=36.34 E-value=23 Score=24.68 Aligned_cols=26 Identities=31% Similarity=0.664 Sum_probs=17.2
Q ss_pred cccCCCCCCcccchhhhhhhccccCCCCCCCCCCCCc
Q 012378 139 MEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAK 175 (465)
Q Consensus 139 ~~~C~~C~~~y~rd~~~~~i~~~~~~P~C~~p~CGg~ 175 (465)
..+|..||..+..+. .+..| |.||..
T Consensus 2 ~~~C~~CG~i~~g~~---------~p~~C--P~Cg~~ 27 (34)
T cd00729 2 VWVCPVCGYIHEGEE---------APEKC--PICGAP 27 (34)
T ss_pred eEECCCCCCEeECCc---------CCCcC--cCCCCc
Confidence 368999998764321 23478 789864
No 176
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=36.18 E-value=19 Score=38.42 Aligned_cols=27 Identities=30% Similarity=0.481 Sum_probs=18.7
Q ss_pred cccCCCCCCcccchhhhhhhccccCCCCCCCCCCCCccc
Q 012378 139 MEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLR 177 (465)
Q Consensus 139 ~~~C~~C~~~y~rd~~~~~i~~~~~~P~C~~p~CGg~Lr 177 (465)
.++|..||++|. +. ...+| |.|+|.|.
T Consensus 2 ~l~C~~Cg~~~~-~~---------~~~~C--~~c~g~l~ 28 (398)
T TIGR03844 2 TLRCPGCGEVLP-DH---------YTLSC--PLDCGLLR 28 (398)
T ss_pred EEEeCCCCCccC-Cc---------cccCC--CCCCCceE
Confidence 578999999985 21 12468 67887754
No 177
>COG0243 BisC Anaerobic dehydrogenases, typically selenocysteine-containing [Energy production and conversion]
Probab=36.04 E-value=28 Score=39.93 Aligned_cols=51 Identities=22% Similarity=0.377 Sum_probs=37.2
Q ss_pred hccCCEEEEEccCCCc-cccCc----ccHHHhcCCCeEEEECCCCCCCCCcccEEE
Q 012378 199 CKIADVVLCLGTSLQI-TPACN----LPLKCLRGGGKIVIVNLQKTPKDKKASLVI 249 (465)
Q Consensus 199 ~~~aDLlLvlGTSL~V-~Pa~~----Lp~~a~~~Ga~lViINl~~t~~d~~adl~I 249 (465)
++.+|++|++|+.... .|... ....+...|+++|.|++..+.....+|.+|
T Consensus 197 ~~~a~~iv~~G~N~~~~~~~~~~~~~~~~~~~~~~~kviviDP~~t~Ta~~ad~~l 252 (765)
T COG0243 197 IENADLIVLWGSNPAEAHPVLGRGLLLAKAAKRSGAKVIVIDPRRTETAALADLWL 252 (765)
T ss_pred HhcCCEEEEECCChHHhCcchhhHHHHHHHhccCCCEEEEECCCCChhHHhhCCcc
Confidence 8899999999998776 55433 222335577899999999988766666443
No 178
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=35.81 E-value=53 Score=37.82 Aligned_cols=46 Identities=20% Similarity=0.239 Sum_probs=32.7
Q ss_pred HHHhccCCEEEEEccCCCc-ccc-CcccHHHhcCCCeEEEECCCCCCC
Q 012378 196 EKHCKIADVVLCLGTSLQI-TPA-CNLPLKCLRGGGKIVIVNLQKTPK 241 (465)
Q Consensus 196 ~~~~~~aDLlLvlGTSL~V-~Pa-~~Lp~~a~~~Ga~lViINl~~t~~ 241 (465)
...+.++|++|++|+.... .|. ......++++|+++|.|++..+..
T Consensus 365 ~~Di~~ad~Il~~G~N~~~~~p~~~~~i~~a~~~G~klividpr~t~~ 412 (776)
T PRK09129 365 IAELSNLDAVLVVGSNLRKEHPLLAARLRQAAKNGAKLSAINPVDDDF 412 (776)
T ss_pred HHHHHhCCEEEEEecCcchhcHHHHHHHHHHHHCCCeEEEecCCcccc
Confidence 4567789999999997543 342 222245677899999999977754
No 179
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=35.34 E-value=51 Score=32.57 Aligned_cols=55 Identities=15% Similarity=0.237 Sum_probs=44.1
Q ss_pred HHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCCCcccEEEEC
Q 012378 197 KHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHG 251 (465)
Q Consensus 197 ~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~~adl~I~g 251 (465)
..+.+-|++|++..|............|++.|+++|.|-....+....+|+.|.-
T Consensus 171 ~~~~~~D~vI~iS~sG~t~~~~~~~~~ak~~g~~vI~IT~~~s~l~~~ad~~l~~ 225 (284)
T PRK11302 171 MNSSDGDVVVLISHTGRTKSLVELAQLARENGATVIAITSAGSPLAREATLALTL 225 (284)
T ss_pred HhCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEECCCCChhHHhCCEEEec
Confidence 4567889999999998887777777889999999998876556666677877754
No 180
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=35.18 E-value=72 Score=29.02 Aligned_cols=54 Identities=15% Similarity=0.025 Sum_probs=42.1
Q ss_pred HhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEEC-CCCCCCCCcccEEEEC
Q 012378 198 HCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVN-LQKTPKDKKASLVIHG 251 (465)
Q Consensus 198 ~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViIN-l~~t~~d~~adl~I~g 251 (465)
.+.+-|++|++-.|..+.-.......++++|+++|.|- ....+..+.+|+.|.-
T Consensus 76 ~~~~~D~~i~iS~sG~t~~~~~~~~~a~~~g~~ii~iT~~~~s~l~~~ad~~l~~ 130 (154)
T TIGR00441 76 LGQKGDVLLGISTSGNSKNVLKAIEAAKDKGMKTITLAGKDGGKMAGLADIELRV 130 (154)
T ss_pred hCCCCCEEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCCEEEEe
Confidence 45788999999999988877777788899999987764 3456666778877753
No 181
>PRK14715 DNA polymerase II large subunit; Provisional
Probab=35.01 E-value=18 Score=44.01 Aligned_cols=56 Identities=36% Similarity=0.471 Sum_probs=35.1
Q ss_pred EcCCCCcc-----ccCCCCCCcccchhhhhhhccccCCCCCCCCCCCCcccCcEEeCCCCCChhhhhHHHHHhccC
Q 012378 132 ELHGNSFM-----EACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIA 202 (465)
Q Consensus 132 ELHGnl~~-----~~C~~C~~~y~rd~~~~~i~~~~~~P~C~~p~CGg~LrP~VV~FGE~lp~~~~~~A~~~~~~a 202 (465)
.|-||+.. .+| +|+..|.|-. + .-+| |+|||.+-.+|-- .-=+.-++.|...+.+-
T Consensus 1530 Dl~GNLRaFsrQ~~RC-kC~~kyRR~P------L---~G~C--~kCGg~~ilTV~k---Gsv~KYl~~a~~~~~~y 1590 (1627)
T PRK14715 1530 DLIGNLRAFSRQEFRC-KCGAKYRRVP------L---KGKC--PKCGSKLILTVSK---GAVEKYMPVAKMMAEKY 1590 (1627)
T ss_pred hhhhhhhhhhccceee-cCCCccccCC------C---CCcC--cccCCeEEEEEec---chHHHHHHHHHHHHHHc
Confidence 67799864 589 9999885532 2 3479 7999988777641 11223344455544443
No 182
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=34.55 E-value=51 Score=28.01 Aligned_cols=58 Identities=17% Similarity=0.200 Sum_probs=42.1
Q ss_pred HHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECC-CCCCCCCcccEEEECcHH
Q 012378 197 KHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNL-QKTPKDKKASLVIHGFVD 254 (465)
Q Consensus 197 ~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl-~~t~~d~~adl~I~g~~d 254 (465)
..+.+-|++|++-.+........+...++++|+++|.|-. ..++..+.+|+.|.-...
T Consensus 56 ~~~~~~~~~i~iS~~g~~~~~~~~~~~a~~~g~~iv~iT~~~~~~l~~~~d~~i~~~~~ 114 (139)
T cd05013 56 ANLTPGDVVIAISFSGETKETVEAAEIAKERGAKVIAITDSANSPLAKLADIVLLVSSE 114 (139)
T ss_pred HcCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEcCCCCChhHHhcCEEEEcCCC
Confidence 3456788999999998887777777778888998776544 455666677777765443
No 183
>PRK06450 threonine synthase; Validated
Probab=34.41 E-value=22 Score=36.93 Aligned_cols=26 Identities=38% Similarity=0.751 Sum_probs=17.1
Q ss_pred ccCCCCCCcccchhhhhhhccccCCCCCCCCCCCCccc
Q 012378 140 EACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLR 177 (465)
Q Consensus 140 ~~C~~C~~~y~rd~~~~~i~~~~~~P~C~~p~CGg~Lr 177 (465)
++|..|+++|..+ ...+| |.||+.|.
T Consensus 4 ~~C~~Cg~~~~~~----------~~~~C--~~cg~~l~ 29 (338)
T PRK06450 4 EVCMKCGKERESI----------YEIRC--KKCGGPFE 29 (338)
T ss_pred eEECCcCCcCCCc----------ccccC--CcCCCEeE
Confidence 5899999887321 12468 67887653
No 184
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=33.92 E-value=19 Score=27.49 Aligned_cols=27 Identities=33% Similarity=0.710 Sum_probs=17.9
Q ss_pred ccCCCCCCcccchhhhhhhccccCCCCCCCCCCCCc
Q 012378 140 EACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAK 175 (465)
Q Consensus 140 ~~C~~C~~~y~rd~~~~~i~~~~~~P~C~~p~CGg~ 175 (465)
..|..||+.+..+. ....-+| |.||..
T Consensus 7 Y~C~~Cg~~~~~~~-------~~~~irC--p~Cg~r 33 (49)
T COG1996 7 YKCARCGREVELDQ-------ETRGIRC--PYCGSR 33 (49)
T ss_pred EEhhhcCCeeehhh-------ccCceeC--CCCCcE
Confidence 57999999872211 1224589 899986
No 185
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=33.37 E-value=15 Score=32.21 Aligned_cols=35 Identities=26% Similarity=0.506 Sum_probs=19.4
Q ss_pred eEEcCCCCccccCCCCCCcccchhhhhhhccccCCCCCCCCCCCCc
Q 012378 130 LAELHGNSFMEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAK 175 (465)
Q Consensus 130 ViELHGnl~~~~C~~C~~~y~rd~~~~~i~~~~~~P~C~~p~CGg~ 175 (465)
.+++.=--...+|..|++.|..+.. .-.| |.||+.
T Consensus 61 ~L~Ie~~p~~~~C~~Cg~~~~~~~~---------~~~C--P~Cgs~ 95 (113)
T PF01155_consen 61 ELEIEEVPARARCRDCGHEFEPDEF---------DFSC--PRCGSP 95 (113)
T ss_dssp EEEEEEE--EEEETTTS-EEECHHC---------CHH---SSSSSS
T ss_pred EEEEEecCCcEECCCCCCEEecCCC---------CCCC--cCCcCC
Confidence 3344433455799999998854421 1248 899986
No 186
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=33.30 E-value=43 Score=31.79 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhCCcEEEEecCCccc
Q 012378 33 KIEQLAKLIQKSKHLVVFTGAGIST 57 (465)
Q Consensus 33 ki~~la~lIk~Ak~IVVlTGAGISt 57 (465)
+-+.++++|++|++.|++.|.|+..
T Consensus 23 ~p~~aa~lI~~AKrPlIivG~ga~~ 47 (171)
T PRK00945 23 SPKIAAMMIKKAKRPLLVVGSLLLD 47 (171)
T ss_pred CHHHHHHHHHhCCCcEEEECcCccc
Confidence 3468889999999999999999975
No 187
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=33.19 E-value=25 Score=30.98 Aligned_cols=33 Identities=12% Similarity=0.222 Sum_probs=19.9
Q ss_pred EcCCCCccccCCCCCCcccchhhhhhhccccCCCCCCCCCCCCc
Q 012378 132 ELHGNSFMEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAK 175 (465)
Q Consensus 132 ELHGnl~~~~C~~C~~~y~rd~~~~~i~~~~~~P~C~~p~CGg~ 175 (465)
++.=--...+|..|+..+..+. ..-.| |.||+.
T Consensus 63 ~I~~vp~~~~C~~Cg~~~~~~~---------~~~~C--P~Cgs~ 95 (113)
T PRK12380 63 HIVYKPAQAWCWDCSQVVEIHQ---------HDAQC--PHCHGE 95 (113)
T ss_pred EEEeeCcEEEcccCCCEEecCC---------cCccC--cCCCCC
Confidence 3333334569999997764321 12248 899975
No 188
>PF04574 DUF592: Protein of unknown function (DUF592); InterPro: IPR007654 This N-terminal region is found in SIR2 proteins (IPR003000 from INTERPRO) and its homologues. Its function is uncharacterised.; GO: 0008270 zinc ion binding, 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides, 0017136 NAD-dependent histone deacetylase activity, 0051287 NAD binding, 0006342 chromatin silencing, 0006355 regulation of transcription, DNA-dependent, 0006476 protein deacetylation; PDB: 2HJH_B.
Probab=33.06 E-value=40 Score=31.51 Aligned_cols=19 Identities=26% Similarity=0.630 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhCCcEEEEe
Q 012378 33 KIEQLAKLIQKSKHLVVFT 51 (465)
Q Consensus 33 ki~~la~lIk~Ak~IVVlT 51 (465)
.++.+.+.|++||+|+|+|
T Consensus 135 Tid~~v~~lk~akkIlVlT 153 (153)
T PF04574_consen 135 TIDDVVDLLKSAKKILVLT 153 (153)
T ss_dssp SHHHHHHHHHH-SSEEEEE
T ss_pred cHHHHHHHHHhcCceEEeC
Confidence 4899999999999999998
No 189
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=32.55 E-value=22 Score=31.46 Aligned_cols=36 Identities=17% Similarity=0.391 Sum_probs=21.7
Q ss_pred eEEcCCCCccccCCCCCCcccchhhhhhhccccCCCCCCCCCCCCc
Q 012378 130 LAELHGNSFMEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAK 175 (465)
Q Consensus 130 ViELHGnl~~~~C~~C~~~y~rd~~~~~i~~~~~~P~C~~p~CGg~ 175 (465)
-+++.=--...+|..|+..+..+. ....+| |.||+.
T Consensus 62 ~L~Ie~vp~~~~C~~Cg~~~~~~~--------~~~~~C--P~Cgs~ 97 (117)
T PRK00564 62 ILDIVDEKVELECKDCSHVFKPNA--------LDYGVC--EKCHSK 97 (117)
T ss_pred EEEEEecCCEEEhhhCCCccccCC--------ccCCcC--cCCCCC
Confidence 344444445579999997664321 012469 899986
No 190
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=32.52 E-value=41 Score=31.10 Aligned_cols=56 Identities=20% Similarity=0.265 Sum_probs=39.6
Q ss_pred hccCCEEEEEccCCCccccCcccHHHhcCCCeEEEEC-CCCCCCCCcccEEEECcHH
Q 012378 199 CKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVN-LQKTPKDKKASLVIHGFVD 254 (465)
Q Consensus 199 ~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViIN-l~~t~~d~~adl~I~g~~d 254 (465)
+.+-|++|++..|....-...+...+++.|+++|.|- ...++....+|+.|.-..+
T Consensus 73 ~~~~D~vI~iS~sG~t~~~i~~~~~ak~~g~~iI~IT~~~~s~la~~ad~~l~~~~~ 129 (179)
T cd05005 73 IGPGDLLIAISGSGETSSVVNAAEKAKKAGAKVVLITSNPDSPLAKLADVVVVIPAA 129 (179)
T ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEEeCCc
Confidence 4567899999888887777777777888888876654 4455666667776654443
No 191
>PF02591 DUF164: Putative zinc ribbon domain; InterPro: IPR003743 This entry describes proteins of unknown function.
Probab=32.14 E-value=39 Score=25.74 Aligned_cols=41 Identities=24% Similarity=0.438 Sum_probs=27.3
Q ss_pred ceEEcCCCCccccCCCCCCcccchhhhhhhccccCCCCCCCCCCCCcc
Q 012378 129 KLAELHGNSFMEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKL 176 (465)
Q Consensus 129 kViELHGnl~~~~C~~C~~~y~rd~~~~~i~~~~~~P~C~~p~CGg~L 176 (465)
-|..++|. .|..|+-....... ..+...+.+..| |.||..|
T Consensus 16 ~va~v~~~----~C~gC~~~l~~~~~-~~i~~~~~i~~C--p~CgRiL 56 (56)
T PF02591_consen 16 AVARVEGG----TCSGCHMELPPQEL-NEIRKGDEIVFC--PNCGRIL 56 (56)
T ss_pred EEEEeeCC----ccCCCCEEcCHHHH-HHHHcCCCeEEC--cCCCccC
Confidence 47777775 89999977655432 333333456789 7999764
No 192
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=32.00 E-value=82 Score=29.66 Aligned_cols=24 Identities=17% Similarity=0.270 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhCCcEEEEecCCcc
Q 012378 33 KIEQLAKLIQKSKHLVVFTGAGIS 56 (465)
Q Consensus 33 ki~~la~lIk~Ak~IVVlTGAGIS 56 (465)
+-+.++++|++|++.+++.|.|+.
T Consensus 16 ~p~~aa~lLk~AKRPvIivG~ga~ 39 (162)
T TIGR00315 16 SPKLVAMMIKRAKRPLLIVGPENL 39 (162)
T ss_pred CHHHHHHHHHcCCCcEEEECCCcC
Confidence 346888899999999999999885
No 193
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=31.93 E-value=71 Score=30.39 Aligned_cols=57 Identities=16% Similarity=0.011 Sum_probs=43.0
Q ss_pred HHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEEC-CCCCCCCCcccEEEECcH
Q 012378 197 KHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVN-LQKTPKDKKASLVIHGFV 253 (465)
Q Consensus 197 ~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViIN-l~~t~~d~~adl~I~g~~ 253 (465)
..+.+-|++|++-.|....-.......++++|+++|.|- ....+..+.+|+.|.-..
T Consensus 107 ~~~~~~Dv~I~iS~SG~t~~~i~~~~~ak~~g~~iI~iT~~~~s~l~~~ad~~l~~~~ 164 (192)
T PRK00414 107 AVGREGDVLLGISTSGNSGNIIKAIEAARAKGMKVITLTGKDGGKMAGLADIEIRVPH 164 (192)
T ss_pred HhCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEeCC
Confidence 345778999999999998887777788889999977764 445666667787775443
No 194
>TIGR03129 one_C_dehyd_B formylmethanofuran dehydrogenase subunit B. Members of this largely archaeal protein family are subunit B of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit C. Note that this model does not distinguish tungsten (FwdB) from molybdenum-containing (FmdB) forms of this enzyme.
Probab=31.35 E-value=63 Score=33.61 Aligned_cols=51 Identities=24% Similarity=0.310 Sum_probs=34.8
Q ss_pred ccCCEEEEEccCCCc-ccc--Cccc-------HHHhcCCCeEEEECCCCCCCCCcccEEEE
Q 012378 200 KIADVVLCLGTSLQI-TPA--CNLP-------LKCLRGGGKIVIVNLQKTPKDKKASLVIH 250 (465)
Q Consensus 200 ~~aDLlLvlGTSL~V-~Pa--~~Lp-------~~a~~~Ga~lViINl~~t~~d~~adl~I~ 250 (465)
.+||++|++|+.... .|. .++. ..+.++|+++|.|++..+.....+|.+|.
T Consensus 136 ~~ad~il~~G~n~~~~~p~~~~r~~~~~~~~~~~~~~~g~~lividp~~s~t~~~ad~~l~ 196 (421)
T TIGR03129 136 NRADVIIYWGTNPMHAHPRHMSRYSVFPRGFFTQRGREDRTVIVVDPRKTDTAKLADYHLQ 196 (421)
T ss_pred hcCCEEEEEccCccccCchHHhhhhhhhhhhhhhcccCCCEEEEECCCCCCcchhhcceec
Confidence 469999999987543 332 1110 11226788999999999888777787664
No 195
>PRK14717 putative glycine/sarcosine/betaine reductase complex protein A; Provisional
Probab=31.17 E-value=67 Score=28.10 Aligned_cols=36 Identities=36% Similarity=0.653 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhCCcEEEEecCCccccCC---------CCCccCC
Q 012378 31 QEKIEQLAKLIQKSKHLVVFTGAGISTSCG---------IPDFRGP 67 (465)
Q Consensus 31 ~~ki~~la~lIk~Ak~IVVlTGAGIStaSG---------IPDFRg~ 67 (465)
+..++++++... +.++||+-||-=.-+|| =|+|-||
T Consensus 6 Q~rvk~~aek~g-~eNvvV~lG~aeaEaaglaAETVt~GDPTfAGP 50 (107)
T PRK14717 6 QKRIKELAEKYG-AENIVVILGAAEAEAAGLAAETVTNGDPTFAGP 50 (107)
T ss_pred HHHHHHHHHhcC-CccEEEEecCcchhhccceeeeeccCCCccccc
Confidence 345666666654 56777777754444444 4999998
No 196
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=31.12 E-value=52 Score=33.86 Aligned_cols=71 Identities=14% Similarity=0.172 Sum_probs=43.2
Q ss_pred hHHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCC-C---CCCcccEEEEC---cHHHHHHHHHHHh
Q 012378 193 NPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKT-P---KDKKASLVIHG---FVDKVVAGVMDLL 264 (465)
Q Consensus 193 ~~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t-~---~d~~adl~I~g---~~devL~~L~~~L 264 (465)
++..+.+.+|||+||+|+--. .-..+|...|.+.|.+-+.|+.... + +.....+.|.+ ..+.+++.+.++|
T Consensus 204 ~Avk~la~~~Dl~iVVG~~nS-SNs~rL~eiA~~~g~~aylId~~~ei~~~w~~~~~~VGvTAGAStPd~lV~~Vi~~l 281 (294)
T COG0761 204 DAVKELAPEVDLVIVVGSKNS-SNSNRLAEIAKRHGKPAYLIDDAEEIDPEWLKGVKTVGVTAGASTPDWLVQEVIAKL 281 (294)
T ss_pred HHHHHHhhcCCEEEEECCCCC-ccHHHHHHHHHHhCCCeEEeCChHhCCHHHhcCccEEEEecCCCCCHHHHHHHHHHH
Confidence 345567789999999996321 1125677788888888777764321 1 12234455543 3456666666655
No 197
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=30.91 E-value=57 Score=29.12 Aligned_cols=36 Identities=14% Similarity=0.192 Sum_probs=26.8
Q ss_pred hccCCEEEEEccCCCccccCcccHHHhcCCCeEEEE
Q 012378 199 CKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIV 234 (465)
Q Consensus 199 ~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViI 234 (465)
++.-|++|++-+|.+.+..-.....|+++|.++|-|
T Consensus 101 ~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIal 136 (138)
T PF13580_consen 101 IRPGDVLIVISNSGNSPNVIEAAEEAKERGMKVIAL 136 (138)
T ss_dssp --TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEE
Confidence 778899999999999877777778899999998865
No 198
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=30.61 E-value=23 Score=30.43 Aligned_cols=28 Identities=36% Similarity=0.720 Sum_probs=18.5
Q ss_pred cccCCCCCCcccchhhhhhhccccCCCCCCCCCCCCc
Q 012378 139 MEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAK 175 (465)
Q Consensus 139 ~~~C~~C~~~y~rd~~~~~i~~~~~~P~C~~p~CGg~ 175 (465)
-.+|.+||.++..+.. + .+-+| |.|.+.
T Consensus 58 Pa~CkkCGfef~~~~i------k-~pSRC--P~CKSE 85 (97)
T COG3357 58 PARCKKCGFEFRDDKI------K-KPSRC--PKCKSE 85 (97)
T ss_pred ChhhcccCcccccccc------C-CcccC--Ccchhh
Confidence 3689999988755321 1 13478 789764
No 199
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=30.02 E-value=31 Score=30.44 Aligned_cols=27 Identities=26% Similarity=0.564 Sum_probs=17.9
Q ss_pred ccccCCCCCCcccchhhhhhhccccCCCCCCCCCCCCc
Q 012378 138 FMEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAK 175 (465)
Q Consensus 138 ~~~~C~~C~~~y~rd~~~~~i~~~~~~P~C~~p~CGg~ 175 (465)
...+|..|++.+..+.. .-.| |.||+.
T Consensus 69 ~~~~C~~Cg~~~~~~~~---------~~~C--P~Cgs~ 95 (115)
T TIGR00100 69 VECECEDCSEEVSPEID---------LYRC--PKCHGI 95 (115)
T ss_pred cEEEcccCCCEEecCCc---------CccC--cCCcCC
Confidence 34699999987644311 2358 899975
No 200
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=29.74 E-value=46 Score=37.06 Aligned_cols=28 Identities=29% Similarity=0.554 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhCCcEEEEecCCccccC
Q 012378 32 EKIEQLAKLIQKSKHLVVFTGAGISTSC 59 (465)
Q Consensus 32 ~ki~~la~lIk~Ak~IVVlTGAGIStaS 59 (465)
++|++++++|.+|++.||+.|.|+.-+.
T Consensus 188 ~~i~~aa~~L~~AkrPvIl~G~G~~~a~ 215 (550)
T COG0028 188 EAIRKAAELLAEAKRPVILAGGGVRRAG 215 (550)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCccccc
Confidence 8899999999999999999999998876
No 201
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=29.69 E-value=49 Score=33.06 Aligned_cols=41 Identities=22% Similarity=0.477 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhC-CcEEEEecCCccccCCCCCccCCCcccc
Q 012378 31 QEKIEQLAKLIQKS-KHLVVFTGAGISTSCGIPDFRGPNGIWT 72 (465)
Q Consensus 31 ~~ki~~la~lIk~A-k~IVVlTGAGIStaSGIPDFRg~~GlW~ 72 (465)
.+.+..+++||..| .+|+|+.|||+.++. |-.|+...|+-+
T Consensus 155 ~eg~~~l~~li~~a~gri~Im~GaGV~~~N-~~~l~~~tg~~e 196 (241)
T COG3142 155 LEGLDLLKRLIEQAKGRIIIMAGAGVRAEN-IAELVLLTGVTE 196 (241)
T ss_pred hhhHHHHHHHHHHhcCCEEEEeCCCCCHHH-HHHHHHhcCchh
Confidence 45678889999987 789999999999864 555654445443
No 202
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=29.50 E-value=50 Score=30.24 Aligned_cols=71 Identities=14% Similarity=0.054 Sum_probs=44.8
Q ss_pred hhHHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCCC-----ccc---EEEECcHHHHHHHHHHH
Q 012378 192 MNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK-----KAS---LVIHGFVDKVVAGVMDL 263 (465)
Q Consensus 192 ~~~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~-----~ad---l~I~g~~devL~~L~~~ 263 (465)
...+.+.+.+||++|+-||++.--...++...+. ++..++++-+.-.-.+. -.+ =.+--+.+.++..+.+.
T Consensus 53 ~~~~~~~l~~aD~viiTGsTlvN~Ti~~iL~~~~-~~~~vil~GpS~~~~P~~l~~~Gv~~v~g~~v~d~~~~~~~i~~G 131 (147)
T PF04016_consen 53 DEDAEEILPWADVVIITGSTLVNGTIDDILELAR-NAREVILYGPSAPLHPEALFDYGVTYVGGSRVVDPEKVLRAISEG 131 (147)
T ss_dssp GGGHHHHGGG-SEEEEECHHCCTTTHHHHHHHTT-TSSEEEEESCCGGS-GGGGCCTT-SEEEEEEES-HHHHHHHHCTT
T ss_pred HHHHHHHHccCCEEEEEeeeeecCCHHHHHHhCc-cCCeEEEEecCchhhHHHHHhCCCCEEEEEEEeCHHHHHHHHHcC
Confidence 3456788999999999999998766666643343 57888888776543331 111 12345778877776543
No 203
>TIGR01706 NAPA periplasmic nitrate reductase, large subunit. The enzymes from Alicagenes eutrophus and Paracoccus pantotrophus have been characterized. In E. coli (as well as other organisms) this gene is part of a large nitrate reduction operon (napFDAGHBC).
Probab=29.39 E-value=53 Score=38.21 Aligned_cols=53 Identities=15% Similarity=0.144 Sum_probs=36.6
Q ss_pred HHhccCCEEEEEccCCCc-ccc--CcccHHHh--cCCCeEEEECCCCCCCCCcccEEEE
Q 012378 197 KHCKIADVVLCLGTSLQI-TPA--CNLPLKCL--RGGGKIVIVNLQKTPKDKKASLVIH 250 (465)
Q Consensus 197 ~~~~~aDLlLvlGTSL~V-~Pa--~~Lp~~a~--~~Ga~lViINl~~t~~d~~adl~I~ 250 (465)
+.+.++|++|++|+.... .|. .++ ..++ ++|+++|.|++..+.....+|++|.
T Consensus 202 ~Di~~ad~il~~G~Np~~~~p~~~~~i-~~a~~~~~GakliviDPr~t~ta~~Ad~~l~ 259 (830)
T TIGR01706 202 DDFEAADAFVLWGSNMAEMHPILWTRV-TDRRLSHPKVKVVVLSTFTHRSFDLADIGII 259 (830)
T ss_pred hHHhhCCEEEEEcCCcchhCCHHHHHH-HHHHhccCCCEEEEECCCCCchhHHhCeeec
Confidence 456899999999997554 232 122 2223 4699999999988877667776553
No 204
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=29.38 E-value=30 Score=26.01 Aligned_cols=14 Identities=36% Similarity=0.790 Sum_probs=10.7
Q ss_pred cccCCCCCCcccch
Q 012378 139 MEACPSCGSEYFRD 152 (465)
Q Consensus 139 ~~~C~~C~~~y~rd 152 (465)
+.+|..|+..|...
T Consensus 1 ky~C~~CgyvYd~~ 14 (47)
T PF00301_consen 1 KYQCPVCGYVYDPE 14 (47)
T ss_dssp EEEETTTSBEEETT
T ss_pred CcCCCCCCEEEcCC
Confidence 35899999888643
No 205
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=29.34 E-value=33 Score=25.38 Aligned_cols=27 Identities=30% Similarity=0.689 Sum_probs=17.8
Q ss_pred ccCCCCCCcccchhhhhhhccccCCCCCCCCCCCCcc
Q 012378 140 EACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKL 176 (465)
Q Consensus 140 ~~C~~C~~~y~rd~~~~~i~~~~~~P~C~~p~CGg~L 176 (465)
..|..||.++..+ ....-+| |.||..+
T Consensus 3 Y~C~~Cg~~~~~~--------~~~~irC--~~CG~rI 29 (44)
T smart00659 3 YICGECGRENEIK--------SKDVVRC--RECGYRI 29 (44)
T ss_pred EECCCCCCEeecC--------CCCceEC--CCCCceE
Confidence 4799999876432 1123479 7999863
No 206
>PRK15482 transcriptional regulator MurR; Provisional
Probab=28.21 E-value=67 Score=32.02 Aligned_cols=59 Identities=12% Similarity=0.153 Sum_probs=46.0
Q ss_pred HHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECC-CCCCCCCcccEEEECcHH
Q 012378 196 EKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNL-QKTPKDKKASLVIHGFVD 254 (465)
Q Consensus 196 ~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl-~~t~~d~~adl~I~g~~d 254 (465)
...+.+-|++|++.-|........+...++++|+++|.|-- ..++....+|+.|....+
T Consensus 177 ~~~~~~~Dv~i~iS~sg~t~~~~~~~~~a~~~g~~iI~IT~~~~s~la~~ad~~l~~~~~ 236 (285)
T PRK15482 177 SQALKKGDVQIAISYSGSKKEIVLCAEAARKQGATVIAITSLADSPLRRLAHFTLDTVSG 236 (285)
T ss_pred HhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchHHhCCEEEEcCCC
Confidence 34577889999999999998888888889999999887754 456666778887765443
No 207
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=28.18 E-value=82 Score=35.07 Aligned_cols=78 Identities=10% Similarity=0.107 Sum_probs=46.9
Q ss_pred eCCCCCChh--------hhhHHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCCCcccEEEE-Cc
Q 012378 182 DWEDALPPK--------EMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIH-GF 252 (465)
Q Consensus 182 ~FGE~lp~~--------~~~~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~~adl~I~-g~ 252 (465)
.|+|..|.. --....+.++.||++|++|+-|+=.-...| ...-+-.++|.++........ -++. =.
T Consensus 249 ~idEs~P~y~GvY~G~~s~~~vre~vE~aD~il~iG~~ltD~~Tg~F--t~~~~~~~~i~~~~~~v~I~~---~~f~~l~ 323 (557)
T COG3961 249 VIDESHPNYLGVYNGKLSEPEVREAVESADLILTIGVLLTDFNTGGF--TYQYKPANIIEIHPDSVKIKD---AVFTNLS 323 (557)
T ss_pred cccccCCCeeeEEecccCCHHHHHHhhcCCEEEEeceEEeeccccce--eeecCcccEEEeccCeeEecc---cccCCee
Confidence 456666642 123567889999999999997765444444 222233677888776643321 1111 23
Q ss_pred HHHHHHHHHHHh
Q 012378 253 VDKVVAGVMDLL 264 (465)
Q Consensus 253 ~devL~~L~~~L 264 (465)
..++|++|.+.+
T Consensus 324 m~~~L~~L~~~i 335 (557)
T COG3961 324 MKDALQELAKKI 335 (557)
T ss_pred HHHHHHHHHHHh
Confidence 567777777665
No 208
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=27.79 E-value=46 Score=28.27 Aligned_cols=27 Identities=22% Similarity=0.407 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhCCcEEEEecCCccccCC
Q 012378 33 KIEQLAKLIQKSKHLVVFTGAGISTSCG 60 (465)
Q Consensus 33 ki~~la~lIk~Ak~IVVlTGAGIStaSG 60 (465)
.++++++.|.++++ |+++|.|.|...+
T Consensus 2 ~i~~~~~~i~~~~~-i~i~g~g~s~~~a 28 (139)
T cd05013 2 ALEKAVDLLAKARR-IYIFGVGSSGLVA 28 (139)
T ss_pred HHHHHHHHHHhCCE-EEEEEcCchHHHH
Confidence 47889999999977 5778999877654
No 209
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=26.92 E-value=30 Score=29.37 Aligned_cols=16 Identities=31% Similarity=0.607 Sum_probs=13.4
Q ss_pred hCCcEEEEecCCcccc
Q 012378 43 KSKHLVVFTGAGISTS 58 (465)
Q Consensus 43 ~Ak~IVVlTGAGISta 58 (465)
+.++|+++.|+|+||+
T Consensus 2 ~~~~ILl~C~~G~sSS 17 (95)
T TIGR00853 2 NETNILLLCAAGMSTS 17 (95)
T ss_pred CccEEEEECCCchhHH
Confidence 3578999999999965
No 210
>PRK02947 hypothetical protein; Provisional
Probab=26.89 E-value=76 Score=31.41 Aligned_cols=41 Identities=17% Similarity=0.260 Sum_probs=30.0
Q ss_pred HhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCC
Q 012378 198 HCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQK 238 (465)
Q Consensus 198 ~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~ 238 (465)
.+.+.|++|++-.|........+...++++|+++|.|--.+
T Consensus 103 ~~~~~Dv~i~iS~sG~t~~~i~~~~~a~~~g~~vI~iT~~~ 143 (246)
T PRK02947 103 DIRPGDVLIVVSNSGRNPVPIEMALEAKERGAKVIAVTSLA 143 (246)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEcCCc
Confidence 45667888888888777776666677788888877775443
No 211
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=26.86 E-value=1.3e+02 Score=32.92 Aligned_cols=65 Identities=18% Similarity=0.167 Sum_probs=43.9
Q ss_pred cCCEEEEEccCCCccccCcccHHHhc--CCCeEEEECCCCCCCC-------CcccEEEECcHHHHHHHHHHHhc
Q 012378 201 IADVVLCLGTSLQITPACNLPLKCLR--GGGKIVIVNLQKTPKD-------KKASLVIHGFVDKVVAGVMDLLN 265 (465)
Q Consensus 201 ~aDLlLvlGTSL~V~Pa~~Lp~~a~~--~Ga~lViINl~~t~~d-------~~adl~I~g~~devL~~L~~~L~ 265 (465)
+.|++.+-.++.+.+.+..+...+++ .++++|.=....|... ...|.++.|..++.+.+|++.|.
T Consensus 63 ~pdvVgis~~t~~~~~a~~~~~~~k~~~P~~~iV~GG~h~t~~~~~~l~~~p~vD~Vv~GEGE~~~~~Ll~~l~ 136 (497)
T TIGR02026 63 CPDLVLITAITPAIYIACETLKFARERLPNAIIVLGGIHPTFMFHQVLTEAPWIDFIVRGEGEETVVKLIAALE 136 (497)
T ss_pred CcCEEEEecCcccHHHHHHHHHHHHHHCCCCEEEEcCCCcCcCHHHHHhcCCCccEEEeCCcHHHHHHHHHHHH
Confidence 67887665444444445455443333 4777777666665432 24799999999999999998873
No 212
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=26.63 E-value=58 Score=30.66 Aligned_cols=57 Identities=18% Similarity=0.079 Sum_probs=33.4
Q ss_pred ccCCEEEEEccCCCccccCcccHHHhc--CCCeEEEECCCCCCCCCcccEEE-ECcHHHHHHHHHH
Q 012378 200 KIADVVLCLGTSLQITPACNLPLKCLR--GGGKIVIVNLQKTPKDKKASLVI-HGFVDKVVAGVMD 262 (465)
Q Consensus 200 ~~aDLlLvlGTSL~V~Pa~~Lp~~a~~--~Ga~lViINl~~t~~d~~adl~I-~g~~devL~~L~~ 262 (465)
.++||+|.+|+.. +.........+ ...+.|.++ + .+.+.||+.+ +-.-++++..|-+
T Consensus 99 g~~DlvlfvG~~~---y~~~~~ls~lk~f~~~~~i~l~--~-~y~pnA~~Sf~n~~~~~~~~~l~~ 158 (162)
T TIGR00315 99 GNYDLVLFLGIIY---YYLSQMLSSLKHFSHIVTIAID--K-YYQPNADYSFPNLSKDEYLDYLRK 158 (162)
T ss_pred CCcCEEEEeCCcc---hHHHHHHHHHHhhcCcEEEEec--C-CCCCCCceeccccCHHHHHHHHHH
Confidence 7899999999986 33332233333 344555554 3 3356777775 2235666666644
No 213
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=26.59 E-value=46 Score=25.31 Aligned_cols=13 Identities=31% Similarity=0.557 Sum_probs=10.4
Q ss_pred ccCCCCCCcccch
Q 012378 140 EACPSCGSEYFRD 152 (465)
Q Consensus 140 ~~C~~C~~~y~rd 152 (465)
.+|..||..|..+
T Consensus 2 y~C~~CgyiYd~~ 14 (50)
T cd00730 2 YECRICGYIYDPA 14 (50)
T ss_pred cCCCCCCeEECCC
Confidence 5899999888643
No 214
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=26.56 E-value=39 Score=30.70 Aligned_cols=15 Identities=27% Similarity=0.662 Sum_probs=11.1
Q ss_pred ccccCCCCCCcccch
Q 012378 138 FMEACPSCGSEYFRD 152 (465)
Q Consensus 138 ~~~~C~~C~~~y~rd 152 (465)
...+|..||..+..+
T Consensus 69 ~~~~C~~CG~~~~~~ 83 (135)
T PRK03824 69 AVLKCRNCGNEWSLK 83 (135)
T ss_pred eEEECCCCCCEEecc
Confidence 457999999877543
No 215
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=26.41 E-value=98 Score=30.58 Aligned_cols=60 Identities=15% Similarity=0.104 Sum_probs=45.3
Q ss_pred hhHHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCC-CCCCCCcccEEEEC
Q 012378 192 MNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQ-KTPKDKKASLVIHG 251 (465)
Q Consensus 192 ~~~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~-~t~~d~~adl~I~g 251 (465)
+..+...+.+-|++|++.-|............|+++|+++|.|--. ..+....+|+.|..
T Consensus 166 ~~~~~~~~~~~Dv~I~iS~sg~~~~~~~~~~~ak~~ga~iI~IT~~~~s~la~~ad~~l~~ 226 (278)
T PRK11557 166 LLATVQALSPDDLLLAISYSGERRELNLAADEALRVGAKVLAITGFTPNALQQRASHCLYT 226 (278)
T ss_pred HHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHHcCCCEEEEcCCCCCchHHhCCEEEEe
Confidence 3344556788999999988888777667777889999998877554 56666788888864
No 216
>cd02774 MopB_Res-Cmplx1_Nad11-M MopB_Res_Cmplx1_Nad11_M: Mitochondrial-encoded NADH-quinone oxidoreductase/respiratory complex I, the second domain of the Nad11/75-kDa subunit of some protists. NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH-quinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. The Nad11 subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evi
Probab=25.24 E-value=78 Score=33.35 Aligned_cols=45 Identities=22% Similarity=0.414 Sum_probs=31.7
Q ss_pred HHHHHhccCCEEEEEccCCCc-cccCccc-HHHh-cCCCeEEEECCCC
Q 012378 194 PAEKHCKIADVVLCLGTSLQI-TPACNLP-LKCL-RGGGKIVIVNLQK 238 (465)
Q Consensus 194 ~A~~~~~~aDLlLvlGTSL~V-~Pa~~Lp-~~a~-~~Ga~lViINl~~ 238 (465)
...+.+.++|++|++|+.+.. .|....- +.+. +.|++++.|++..
T Consensus 141 ~sl~die~ad~illiG~n~~~e~Pvl~~rlrka~~~~~~ki~vi~~~~ 188 (366)
T cd02774 141 NSLKNLDKSDLCLLIGSNLRVESPILNIRLRNRYNKGNKKIFVIGNKF 188 (366)
T ss_pred CCHHHHhhCCEEEEEcCCcchhhHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 345668899999999998765 4544331 2333 4578999998776
No 217
>PRK13936 phosphoheptose isomerase; Provisional
Probab=25.22 E-value=78 Score=30.17 Aligned_cols=59 Identities=12% Similarity=0.018 Sum_probs=41.1
Q ss_pred HHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECC-CCCCCCC---cccEEEECcHHH
Q 012378 197 KHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNL-QKTPKDK---KASLVIHGFVDK 255 (465)
Q Consensus 197 ~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl-~~t~~d~---~adl~I~g~~de 255 (465)
....+-|++|.+-.|....-...+...++++|+++|.|-- ..++..+ .+|+.|.-..++
T Consensus 107 ~~~~~~Dv~i~iS~sG~t~~~~~~~~~ak~~g~~iI~IT~~~~s~l~~l~~~ad~~l~v~~~~ 169 (197)
T PRK13936 107 ALGQPGDVLLAISTSGNSANVIQAIQAAHEREMHVVALTGRDGGKMASLLLPEDVEIRVPAER 169 (197)
T ss_pred HhCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCChhhhhhccCCEEEEeCCCc
Confidence 3456789999999998877777777778889999887654 3344444 377776554443
No 218
>PRK07524 hypothetical protein; Provisional
Probab=25.12 E-value=65 Score=35.23 Aligned_cols=26 Identities=15% Similarity=0.356 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhCCcEEEEecCCcc
Q 012378 31 QEKIEQLAKLIQKSKHLVVFTGAGIS 56 (465)
Q Consensus 31 ~~ki~~la~lIk~Ak~IVVlTGAGIS 56 (465)
.+.+++++++|++|++.||++|.|+.
T Consensus 188 ~~~i~~~~~~L~~AkrPvil~G~g~~ 213 (535)
T PRK07524 188 PAALAQAAERLAAARRPLILAGGGAL 213 (535)
T ss_pred HHHHHHHHHHHHhCCCcEEEECCChH
Confidence 35799999999999999999999985
No 219
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=25.11 E-value=32 Score=29.90 Aligned_cols=14 Identities=36% Similarity=0.617 Sum_probs=10.1
Q ss_pred CcEEEEecCCcccc
Q 012378 45 KHLVVFTGAGISTS 58 (465)
Q Consensus 45 k~IVVlTGAGISta 58 (465)
++|+++.|+|+||+
T Consensus 2 kkILlvCg~G~STS 15 (104)
T PRK09590 2 KKALIICAAGMSSS 15 (104)
T ss_pred cEEEEECCCchHHH
Confidence 46777888888765
No 220
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=24.65 E-value=30 Score=34.13 Aligned_cols=52 Identities=23% Similarity=0.220 Sum_probs=26.8
Q ss_pred EEcc--CCCccccCcccHHHhcCCCeEEEECCCCCCC--CCcccEEEEC--cHHHHHH
Q 012378 207 CLGT--SLQITPACNLPLKCLRGGGKIVIVNLQKTPK--DKKASLVIHG--FVDKVVA 258 (465)
Q Consensus 207 vlGT--SL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~--d~~adl~I~g--~~devL~ 258 (465)
|+|+ |.+++-+..+-......|.++++||++|..- +..+++-|+. +.+++|.
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~~~~~y~~~iDird~i~~~evm~ 58 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAVENLPYPPDIDIRDLISVEEVME 58 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-S--SS--SEEGGGT--HHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchHhcccccCchHHHHhhhhhhhhhh
Confidence 4564 5555556666556667788999999999653 3345565555 3444554
No 221
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=24.59 E-value=42 Score=29.59 Aligned_cols=28 Identities=21% Similarity=0.354 Sum_probs=17.3
Q ss_pred ccccCCCCCCcccchhhhhhhccccCCCCCCCCCCCCc
Q 012378 138 FMEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAK 175 (465)
Q Consensus 138 ~~~~C~~C~~~y~rd~~~~~i~~~~~~P~C~~p~CGg~ 175 (465)
...+|..|+..+.... .....| |.||+.
T Consensus 69 ~~~~C~~Cg~~~~~~~--------~~~~~C--P~Cgs~ 96 (114)
T PRK03681 69 AECWCETCQQYVTLLT--------QRVRRC--PQCHGD 96 (114)
T ss_pred cEEEcccCCCeeecCC--------ccCCcC--cCcCCC
Confidence 3468999997653321 011358 899975
No 222
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=24.44 E-value=81 Score=27.23 Aligned_cols=49 Identities=27% Similarity=0.302 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHHHcCCceEEEeecccchhhhcCCCCCceEEcC--CCCccccCCCCCCcccc
Q 012378 92 PGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELH--GNSFMEACPSCGSEYFR 151 (465)
Q Consensus 92 Pn~~H~aLa~Le~~G~l~~VITQNIDgLH~rAG~p~~kViELH--Gnl~~~~C~~C~~~y~r 151 (465)
++-.|+.|..|++.|.+..+.+. |+ ...+++. ..-..+.|..||+....
T Consensus 42 ~~TVYR~L~~L~e~Gli~~~~~~--~~---------~~~Y~~~~~~~h~h~iC~~Cg~v~~~ 92 (120)
T PF01475_consen 42 LATVYRTLDLLEEAGLIRKIEFG--DG---------ESRYELSTCHHHHHFICTQCGKVIDL 92 (120)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEET--TS---------EEEEEESSSSSCEEEEETTTS-EEEE
T ss_pred HHHHHHHHHHHHHCCeEEEEEcC--CC---------cceEeecCCCcceEEEECCCCCEEEe
Confidence 34579999999999998776544 22 2344442 34456899999987643
No 223
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=24.37 E-value=43 Score=39.03 Aligned_cols=41 Identities=17% Similarity=0.242 Sum_probs=28.4
Q ss_pred HHhccCCEEEEEccCCCc-cccC-cccHHHhcCCCeEEEECCC
Q 012378 197 KHCKIADVVLCLGTSLQI-TPAC-NLPLKCLRGGGKIVIVNLQ 237 (465)
Q Consensus 197 ~~~~~aDLlLvlGTSL~V-~Pa~-~Lp~~a~~~Ga~lViINl~ 237 (465)
..+.+||++|++|+.+.. .|.. .....+.++|+++|.|++.
T Consensus 367 ~di~~ad~Ilv~G~N~~~~~p~~~~~i~~a~~~gaklividpr 409 (847)
T PRK08166 367 REIESYDAVLVLGEDLTQTAARVALAVRQAVKGKAREMAAAQK 409 (847)
T ss_pred HHHHhCCEEEEEeCChHHhhHHHHHHHHHHHHcCCceEeeccc
Confidence 456789999999998754 4432 2234566788888777764
No 224
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=24.33 E-value=71 Score=34.08 Aligned_cols=58 Identities=21% Similarity=0.316 Sum_probs=33.3
Q ss_pred ccCCCCCCcccchhhhhhhccccCCCCCCCCCCCCccc-CcEEeCCCCCChhhhhHHHHHhccCCEEEEEccC
Q 012378 140 EACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLR-DTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTS 211 (465)
Q Consensus 140 ~~C~~C~~~y~rd~~~~~i~~~~~~P~C~~p~CGg~Lr-P~VV~FGE~lp~~~~~~A~~~~~~aDLlLvlGTS 211 (465)
..|..|+..+. ...+.-.+| |.||+.++ -.-+|-|.-.++++.++..+.+++. ++||-
T Consensus 241 ~~c~~cg~~~~--------~~~~~~~~c--~~Cg~~~~~~GPlW~GpL~d~~f~e~~l~~~~~~----~l~~~ 299 (380)
T COG1867 241 YHCSRCGEIVG--------SFREVDEKC--PHCGGKVHLAGPLWLGPLHDEEFIEEMLEIAEGL----ELGTK 299 (380)
T ss_pred EEcccccceec--------ccccccccC--CcccccceeccCcccCcccCHHHHHHHHHHhhcc----ccccH
Confidence 57999983321 122334579 79998543 3345666655666666655544433 55653
No 225
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=24.24 E-value=1.1e+02 Score=30.55 Aligned_cols=57 Identities=23% Similarity=0.236 Sum_probs=42.8
Q ss_pred HHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECC-CCCCCCCcccEEEEC
Q 012378 195 AEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNL-QKTPKDKKASLVIHG 251 (465)
Q Consensus 195 A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl-~~t~~d~~adl~I~g 251 (465)
....+.+-|++|++--|....-...+...|++.|+++|.|-- ..++....+|+.|..
T Consensus 181 ~~~~~~~~Dl~I~iS~sG~t~~~~~~~~~ak~~g~~ii~IT~~~~s~la~~ad~~l~~ 238 (292)
T PRK11337 181 SAALLQEGDVVLVVSHSGRTSDVIEAVELAKKNGAKIICITNSYHSPIAKLADYVICS 238 (292)
T ss_pred HHhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEc
Confidence 345678889999999888887777777788999999877643 345666677777754
No 226
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=24.12 E-value=36 Score=28.97 Aligned_cols=57 Identities=14% Similarity=0.152 Sum_probs=41.4
Q ss_pred HHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEEC-CCCCCCCCcccEEEECc
Q 012378 196 EKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVN-LQKTPKDKKASLVIHGF 252 (465)
Q Consensus 196 ~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViIN-l~~t~~d~~adl~I~g~ 252 (465)
...+.+-|++|++-.|.......+....+++.|+++|.|- ....+....+|+.|.-.
T Consensus 48 ~~~~~~~d~vi~is~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~~l~~~ad~~l~~~ 105 (131)
T PF01380_consen 48 LENLDPDDLVIIISYSGETRELIELLRFAKERGAPVILITSNSESPLARLADIVLYIP 105 (131)
T ss_dssp GGGCSTTEEEEEEESSSTTHHHHHHHHHHHHTTSEEEEEESSTTSHHHHHSSEEEEEE
T ss_pred cccccccceeEeeeccccchhhhhhhHHHHhcCCeEEEEeCCCCCchhhhCCEEEEec
Confidence 3456677899999999988887777778889999987765 33445555666665543
No 227
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=23.94 E-value=86 Score=34.32 Aligned_cols=36 Identities=33% Similarity=0.526 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHHHHhCCcEEEEecCCccccCCCC
Q 012378 27 PQILQEKIEQLAKLIQKSKHLVVFTGAGISTSCGIP 62 (465)
Q Consensus 27 ~~~l~~ki~~la~lIk~Ak~IVVlTGAGIStaSGIP 62 (465)
.+-....|++++++|..||+-|++.|+|+=..+--|
T Consensus 281 ~~~v~~~i~~~a~Li~laKKPVlyvG~G~Ln~~d~p 316 (675)
T KOG4166|consen 281 EDFVMSHIEQIARLISLAKKPVLYVGGGCLNSSDGP 316 (675)
T ss_pred hhhHHHHHHHHHHHHHhccCceEEeCcccccCCcch
Confidence 344678999999999999999999999998877644
No 228
>PRK04940 hypothetical protein; Provisional
Probab=23.89 E-value=55 Score=31.36 Aligned_cols=62 Identities=21% Similarity=0.105 Sum_probs=38.5
Q ss_pred cCcEEeC--CCCCChhhhhHHHHHhcc----C--CEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCC
Q 012378 177 RDTVLDW--EDALPPKEMNPAEKHCKI----A--DVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPK 241 (465)
Q Consensus 177 rP~VV~F--GE~lp~~~~~~A~~~~~~----a--DLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~ 241 (465)
.|++.+. ....|.+.+....+.+.+ . +=+++|||||-=+=|..| +.+.|.+-|+|||--.|.
T Consensus 26 ~p~~~~~~l~~~~P~~a~~~l~~~i~~~~~~~~~~~~~liGSSLGGyyA~~L---a~~~g~~aVLiNPAv~P~ 95 (180)
T PRK04940 26 DPDVRLISYSTLHPKHDMQHLLKEVDKMLQLSDDERPLICGVGLGGYWAERI---GFLCGIRQVIFNPNLFPE 95 (180)
T ss_pred CCCCeEEECCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEeChHHHHHHHH---HHHHCCCEEEECCCCChH
Confidence 5666543 223445555544444431 1 336789999876555443 566789999999987664
No 229
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=23.71 E-value=74 Score=35.44 Aligned_cols=26 Identities=19% Similarity=0.519 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhCCcEEEEecCCcc
Q 012378 31 QEKIEQLAKLIQKSKHLVVFTGAGIS 56 (465)
Q Consensus 31 ~~ki~~la~lIk~Ak~IVVlTGAGIS 56 (465)
.+.+++++++|++|++.||+.|.|+.
T Consensus 195 ~~~i~~a~~~L~~AkrPvi~~G~g~~ 220 (597)
T PRK08273 195 DEDLRRAAEVLNAGRKVAILVGAGAL 220 (597)
T ss_pred HHHHHHHHHHHhcCCCEEEEECcchH
Confidence 45799999999999999999999985
No 230
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=23.69 E-value=41 Score=33.71 Aligned_cols=41 Identities=22% Similarity=0.403 Sum_probs=28.0
Q ss_pred ceEEcCCCCccccCCCCCCcccchhhhhhhccccCCCCCCCCCCCCcc
Q 012378 129 KLAELHGNSFMEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKL 176 (465)
Q Consensus 129 kViELHGnl~~~~C~~C~~~y~rd~~~~~i~~~~~~P~C~~p~CGg~L 176 (465)
-|+.+.|+ +|..|+-..+..+. ..+.....+..| |.||..|
T Consensus 191 gvvpl~g~----~C~GC~m~l~~~~~-~~V~~~d~iv~C--P~CgRIL 231 (239)
T COG1579 191 GVVPLEGR----VCGGCHMKLPSQTL-SKVRKKDEIVFC--PYCGRIL 231 (239)
T ss_pred eEEeecCC----cccCCeeeecHHHH-HHHhcCCCCccC--CccchHH
Confidence 46677764 79999976655443 223335668899 8999875
No 231
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=23.61 E-value=79 Score=34.70 Aligned_cols=28 Identities=7% Similarity=0.019 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHhCCcEEEEecCCccc
Q 012378 30 LQEKIEQLAKLIQKSKHLVVFTGAGIST 57 (465)
Q Consensus 30 l~~ki~~la~lIk~Ak~IVVlTGAGISt 57 (465)
..+.+++++++|++||+.|++.|.|...
T Consensus 191 ~~~~i~~a~~~L~~AkrPvil~G~g~~~ 218 (539)
T TIGR03393 191 LRAFRDAAENKLAMAKRVSLLADFLALR 218 (539)
T ss_pred HHHHHHHHHHHHHhCCCCEEEeChhhcc
Confidence 3456899999999999999999999853
No 232
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=23.43 E-value=1.9e+02 Score=31.18 Aligned_cols=69 Identities=13% Similarity=0.024 Sum_probs=47.8
Q ss_pred HHHHHhccCCEEEEEccCCCccccCcccHHHhc--CCCeEEEECCCCCCCC-------CcccEEEECcHHHHHHHHHH
Q 012378 194 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLR--GGGKIVIVNLQKTPKD-------KKASLVIHGFVDKVVAGVMD 262 (465)
Q Consensus 194 ~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~--~Ga~lViINl~~t~~d-------~~adl~I~g~~devL~~L~~ 262 (465)
...+...+.|++.+-.++.+...+..+....++ .+.++|.-....|... ...|.++.|..+..+.+|++
T Consensus 61 ~~~~~~~~~Dlv~is~~t~~~~~~~~ia~~iK~~~p~~~vv~GG~h~t~~pe~~l~~~~~vD~Vv~GEgE~~l~~l~~ 138 (472)
T TIGR03471 61 DTLAIAKDYDLVVLHTSTPSFPSDVKTAEALKEQNPATKIGFVGAHVAVLPEKTLKQGPAIDFVCRREFDYTIKEVAE 138 (472)
T ss_pred HHHHHhcCCCEEEEECCCcchHHHHHHHHHHHHhCCCCEEEEECCCcccCHHHHHhcCCCeeEEEeCchHHHHHHHHc
Confidence 344456678988776666666666666554443 4677877777665543 24689999999999988764
No 233
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=23.38 E-value=58 Score=21.49 Aligned_cols=9 Identities=56% Similarity=1.538 Sum_probs=7.0
Q ss_pred cCCCCCCcc
Q 012378 141 ACPSCGSEY 149 (465)
Q Consensus 141 ~C~~C~~~y 149 (465)
.|+.|+++.
T Consensus 2 ~CP~C~~~V 10 (26)
T PF10571_consen 2 TCPECGAEV 10 (26)
T ss_pred cCCCCcCCc
Confidence 588888765
No 234
>TIGR00375 conserved hypothetical protein TIGR00375. The member of this family from Methanococcus jannaschii, MJ0043, is considerably longer and appears to contain an intein N-terminal to the region of homology.
Probab=23.11 E-value=45 Score=35.53 Aligned_cols=39 Identities=23% Similarity=0.562 Sum_probs=26.1
Q ss_pred CCCCccccCCCCCCcccchhhhhhhccccCCCCCCCCCCCCcccCcEE
Q 012378 134 HGNSFMEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLRDTVL 181 (465)
Q Consensus 134 HGnl~~~~C~~C~~~y~rd~~~~~i~~~~~~P~C~~p~CGg~LrP~VV 181 (465)
-|-++.--|.+|+..+...... ....+| | ||+.+.-.|.
T Consensus 235 ~GKYh~~~c~~C~~~~~~~~~~------~~~~~C--p-CG~~i~~GV~ 273 (374)
T TIGR00375 235 LGKYHQTACEACGEPAVSEDAE------TACANC--P-CGGRIKKGVS 273 (374)
T ss_pred CCccchhhhcccCCcCCchhhh------hcCCCC--C-CCCcceechH
Confidence 4778888999999876533211 113579 8 9998765543
No 235
>PF12172 DUF35_N: Rubredoxin-like zinc ribbon domain (DUF35_N); InterPro: IPR022002 This domain has no known function and is found in conserved hypothetical archaeal and bacterial proteins. The domain is duplicated in O53566 from SWISSPROT. The structure of a DUF35 representative reveals two long N-terminal helices followed by a rubredoxin-like zinc ribbon domain represented in this family and a C-terminal OB fold domain. Zinc is chelated by the four conserved cysteines in the alignment. ; PDB: 3IRB_A.
Probab=22.81 E-value=32 Score=23.97 Aligned_cols=27 Identities=30% Similarity=0.754 Sum_probs=13.7
Q ss_pred CCCccccCCCCCCcccchhhhhhhccccCCCCCCCCCCCC
Q 012378 135 GNSFMEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGA 174 (465)
Q Consensus 135 Gnl~~~~C~~C~~~y~rd~~~~~i~~~~~~P~C~~p~CGg 174 (465)
|.+...+|.+||..+... -+.| |.|++
T Consensus 7 ~~l~~~rC~~Cg~~~~pP-----------r~~C--p~C~s 33 (37)
T PF12172_consen 7 GRLLGQRCRDCGRVQFPP-----------RPVC--PHCGS 33 (37)
T ss_dssp T-EEEEE-TTT--EEES-------------SEE--TTTT-
T ss_pred CEEEEEEcCCCCCEecCC-----------CcCC--CCcCc
Confidence 556667999999764221 2468 78875
No 236
>PF14353 CpXC: CpXC protein
Probab=22.71 E-value=41 Score=29.68 Aligned_cols=16 Identities=44% Similarity=1.115 Sum_probs=9.9
Q ss_pred CCCCccccCCCCCCcc
Q 012378 134 HGNSFMEACPSCGSEY 149 (465)
Q Consensus 134 HGnl~~~~C~~C~~~y 149 (465)
-|+++...|++||+.+
T Consensus 33 ~g~l~~~~CP~Cg~~~ 48 (128)
T PF14353_consen 33 DGSLFSFTCPSCGHKF 48 (128)
T ss_pred cCCcCEEECCCCCCce
Confidence 5666666666666544
No 237
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=22.60 E-value=55 Score=31.30 Aligned_cols=30 Identities=37% Similarity=0.740 Sum_probs=21.1
Q ss_pred ccCCCCCCcccchhhhhhhccccCCCCCCCCCCCCccc
Q 012378 140 EACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLR 177 (465)
Q Consensus 140 ~~C~~C~~~y~rd~~~~~i~~~~~~P~C~~p~CGg~Lr 177 (465)
.+|+.|+-.|..+..... .-.| |.||+.|.
T Consensus 114 y~C~~~~~r~sfdeA~~~------~F~C--p~Cg~~L~ 143 (176)
T COG1675 114 YVCPNCHVKYSFDEAMEL------GFTC--PKCGEDLE 143 (176)
T ss_pred eeCCCCCCcccHHHHHHh------CCCC--CCCCchhh
Confidence 489889887766643321 3579 79999875
No 238
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=22.32 E-value=35 Score=32.02 Aligned_cols=17 Identities=24% Similarity=0.683 Sum_probs=9.3
Q ss_pred CCCCCCCCCccc-----CcEEeCC
Q 012378 166 RCSDLKCGAKLR-----DTVLDWE 184 (465)
Q Consensus 166 ~C~~p~CGg~Lr-----P~VV~FG 184 (465)
.| |+|+..+| |+|+.||
T Consensus 41 ~C--p~C~~~IrG~y~v~gv~~~g 62 (158)
T PF10083_consen 41 SC--PNCSTPIRGDYHVEGVFGLG 62 (158)
T ss_pred HC--cCCCCCCCCceecCCeeeeC
Confidence 46 56665543 5555553
No 239
>PRK00762 hypA hydrogenase nickel incorporation protein; Provisional
Probab=22.31 E-value=43 Score=29.93 Aligned_cols=32 Identities=31% Similarity=0.586 Sum_probs=17.0
Q ss_pred ccccCCCCCCcccch-hhhhhhccccCCCCCCCCCCCCc
Q 012378 138 FMEACPSCGSEYFRD-FEVETIGLKETSRRCSDLKCGAK 175 (465)
Q Consensus 138 ~~~~C~~C~~~y~rd-~~~~~i~~~~~~P~C~~p~CGg~ 175 (465)
...+| .|++.+..+ +...... ....| |.||+.
T Consensus 69 ~~~~C-~Cg~~~~~~~~~~~~~~---~~~~C--P~Cgs~ 101 (124)
T PRK00762 69 VEIEC-ECGYEGVVDEDEIDHYA---AVIEC--PVCGNK 101 (124)
T ss_pred eeEEe-eCcCcccccccchhccc---cCCcC--cCCCCC
Confidence 34689 999776433 1111000 01258 899964
No 240
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=22.09 E-value=1.2e+02 Score=23.82 Aligned_cols=40 Identities=15% Similarity=0.035 Sum_probs=31.5
Q ss_pred HHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEEC
Q 012378 196 EKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVN 235 (465)
Q Consensus 196 ~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViIN 235 (465)
...+.+-|++|++-.|....-..++...+++.|+++|.|-
T Consensus 42 ~~~~~~~d~~i~iS~sg~t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 42 LSLLRKGDVVIALSYSGRTEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred HhcCCCCCEEEEEECCCCCHHHHHHHHHHHHcCCeEEEEe
Confidence 3556788999999888877666677778888999988764
No 241
>TIGR02663 nifX nitrogen fixation protein NifX. Members of this family are NifX proteins encoded within operons for nitrogen fixation in a number of bacteria. NifX, NafY, and the C-terminal region of NifB all belong to the Pfam family pfam02579 and are involved in MoFe cofactor biosynthesis. NifX is a nitrogenase accessory protein with a role in expression of the MoFe cofactor.
Probab=22.08 E-value=2.5e+02 Score=24.48 Aligned_cols=64 Identities=19% Similarity=0.294 Sum_probs=42.3
Q ss_pred hhHHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCCCcccEEEECcHHHHHHHHHHHhccCCCCc
Q 012378 192 MNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVVAGVMDLLNLRIPPY 271 (465)
Q Consensus 192 ~~~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~~adl~I~g~~devL~~L~~~L~l~iP~~ 271 (465)
+....+.++.||++|+.|-+-. +. ......|.+++..... +.++++|.+|-+.|.-.-|+|
T Consensus 54 ~~~~~~~l~~c~vvi~~~IG~~---a~---~~L~~~gI~~~~~~~~-------------~~v~eal~~l~~~~~~~~~~w 114 (119)
T TIGR02663 54 IAPKIEALKDCAILYCLAIGGP---AA---AKVVAAKIHPIKVNEP-------------ESISELLERLQKMLKGNPPPW 114 (119)
T ss_pred HHHHHHHhCCCcEEEEhhcCcc---HH---HHHHHcCCeeEecCCC-------------ccHHHHHHHHHHHHcCCCCHH
Confidence 4444667789999999887621 11 1223456666543111 359999999999998788888
Q ss_pred ccc
Q 012378 272 IRI 274 (465)
Q Consensus 272 ~~~ 274 (465)
.++
T Consensus 115 ~~~ 117 (119)
T TIGR02663 115 LRK 117 (119)
T ss_pred HHh
Confidence 654
No 242
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=22.02 E-value=85 Score=34.78 Aligned_cols=28 Identities=25% Similarity=0.519 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHhCCcEEEEecCCcccc
Q 012378 31 QEKIEQLAKLIQKSKHLVVFTGAGISTS 58 (465)
Q Consensus 31 ~~ki~~la~lIk~Ak~IVVlTGAGISta 58 (465)
...+++++++|++|++.+|++|.|+..+
T Consensus 183 ~~~i~~~~~~L~~A~rP~i~~G~g~~~~ 210 (579)
T TIGR03457 183 ATSLAQAARLLAEAKFPVIISGGGVVMG 210 (579)
T ss_pred HHHHHHHHHHHHhCCCCEEEECcCcccc
Confidence 3468899999999999999999999643
No 243
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=21.86 E-value=88 Score=34.89 Aligned_cols=28 Identities=14% Similarity=0.488 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhCCcEEEEecCCcccc
Q 012378 31 QEKIEQLAKLIQKSKHLVVFTGAGISTS 58 (465)
Q Consensus 31 ~~ki~~la~lIk~Ak~IVVlTGAGISta 58 (465)
...+++++++|.+|++.||++|.|+..+
T Consensus 189 ~~~i~~~~~~L~~AkrPvIl~G~g~~~~ 216 (588)
T TIGR01504 189 RAQIEKAVEMLNAAERPLIVAGGGVINA 216 (588)
T ss_pred HHHHHHHHHHHHhCCCcEEEECCCcchh
Confidence 4579999999999999999999999743
No 244
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=21.82 E-value=1.6e+02 Score=28.32 Aligned_cols=58 Identities=12% Similarity=-0.006 Sum_probs=41.5
Q ss_pred HHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEEC-CCCCCCCCc---ccEEEECcH
Q 012378 196 EKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVN-LQKTPKDKK---ASLVIHGFV 253 (465)
Q Consensus 196 ~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViIN-l~~t~~d~~---adl~I~g~~ 253 (465)
.....+-|++|++-+|............++..|+++|.|- ....+..+. +|+.|.=+.
T Consensus 104 ~~~~~~gDvli~iS~SG~s~~v~~a~~~Ak~~G~~vI~IT~~~~s~l~~l~~~~D~~i~ip~ 165 (196)
T PRK10886 104 RALGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVEIRIPS 165 (196)
T ss_pred HHcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCChhhhccccCCEEEEcCC
Confidence 3456788999999999998887777788899999977764 344554443 566554433
No 245
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=21.79 E-value=84 Score=34.92 Aligned_cols=27 Identities=37% Similarity=0.556 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHhCCcEEEEecCCccc
Q 012378 31 QEKIEQLAKLIQKSKHLVVFTGAGIST 57 (465)
Q Consensus 31 ~~ki~~la~lIk~Ak~IVVlTGAGISt 57 (465)
.+.+++++++|.+|++.+|++|.|+-.
T Consensus 204 ~~~v~~a~~~L~~AkrPvil~G~g~~~ 230 (585)
T CHL00099 204 IKRIEQAAKLILQSSQPLLYVGGGAII 230 (585)
T ss_pred HHHHHHHHHHHHcCCCcEEEECCCCch
Confidence 357999999999999999999999953
No 246
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=21.78 E-value=84 Score=34.97 Aligned_cols=27 Identities=22% Similarity=0.458 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHhCCcEEEEecCCccc
Q 012378 31 QEKIEQLAKLIQKSKHLVVFTGAGIST 57 (465)
Q Consensus 31 ~~ki~~la~lIk~Ak~IVVlTGAGISt 57 (465)
.+.+++++++|++|++.||+.|.|+..
T Consensus 208 ~~~i~~~~~~L~~AkrPvil~G~g~~~ 234 (587)
T PRK06965 208 SGQIRKAVSLLLSAKRPYIYTGGGVIL 234 (587)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCccc
Confidence 457999999999999999999999974
No 247
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=21.67 E-value=1.3e+02 Score=25.41 Aligned_cols=80 Identities=14% Similarity=0.090 Sum_probs=40.7
Q ss_pred cCcEEeCCCCCChhhhhHHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCC--CCCCcccEEEECcHH
Q 012378 177 RDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKT--PKDKKASLVIHGFVD 254 (465)
Q Consensus 177 rP~VV~FGE~lp~~~~~~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t--~~d~~adl~I~g~~d 254 (465)
.++|.+.|.. + ...+.++.||+.|..-..-...|.. ...+...|.++|.-+.... .......+.+.++.+
T Consensus 52 ~~~v~~~g~~--~----e~~~~l~~~dv~l~p~~~~~~~~~k--~~e~~~~G~pvi~~~~~~~~~~~~~~~~~~~~~~~~ 123 (135)
T PF13692_consen 52 RPNVRFHGFV--E----ELPEILAAADVGLIPSRFNEGFPNK--LLEAMAAGKPVIASDNGAEGIVEEDGCGVLVANDPE 123 (135)
T ss_dssp HCTEEEE-S---H----HHHHHHHC-SEEEE-BSS-SCC-HH--HHHHHCTT--EEEEHHHCHCHS---SEEEE-TT-HH
T ss_pred CCCEEEcCCH--H----HHHHHHHhCCEEEEEeeCCCcCcHH--HHHHHHhCCCEEECCcchhhheeecCCeEEECCCHH
Confidence 5677777654 2 3566788899988654321212211 1356677888777665211 111345566678888
Q ss_pred HHHHHHHHHh
Q 012378 255 KVVAGVMDLL 264 (465)
Q Consensus 255 evL~~L~~~L 264 (465)
++...|.+.+
T Consensus 124 ~l~~~i~~l~ 133 (135)
T PF13692_consen 124 ELAEAIERLL 133 (135)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888877654
No 248
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=21.57 E-value=1.3e+02 Score=34.52 Aligned_cols=45 Identities=29% Similarity=0.381 Sum_probs=30.4
Q ss_pred HHHhccCCEEEEEccCCCc-cccCcc-cHHHhcCCC-eEEEECCCCCC
Q 012378 196 EKHCKIADVVLCLGTSLQI-TPACNL-PLKCLRGGG-KIVIVNLQKTP 240 (465)
Q Consensus 196 ~~~~~~aDLlLvlGTSL~V-~Pa~~L-p~~a~~~Ga-~lViINl~~t~ 240 (465)
.+.+.++|++|++|+.... .|.... .+.+.++|+ +++.|++..+.
T Consensus 359 i~dIe~AD~IlliG~Np~~eaPvl~~rirka~~~g~~kIivIdpr~~~ 406 (687)
T PRK09130 359 IAGIEEADAILLIGANPRFEAPVLNARIRKRWRAGGFKIAVIGEQADL 406 (687)
T ss_pred HHHHHhCCEEEEEccCcccccHHHHHHHHHHHHcCCCeEEEEcCcccc
Confidence 4557899999999998643 342221 234555664 99999987554
No 249
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=21.38 E-value=85 Score=34.70 Aligned_cols=27 Identities=22% Similarity=0.474 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhCCcEEEEecCCccc
Q 012378 31 QEKIEQLAKLIQKSKHLVVFTGAGIST 57 (465)
Q Consensus 31 ~~ki~~la~lIk~Ak~IVVlTGAGISt 57 (465)
.+.+++++++|.+|++.+|++|.|+--
T Consensus 200 ~~~l~~~~~~L~~AkrPvIi~G~g~~~ 226 (569)
T PRK09259 200 PEAVDRALDLLKKAKRPLIILGKGAAY 226 (569)
T ss_pred HHHHHHHHHHHHhCCCCEEEECcCccc
Confidence 467999999999999999999999953
No 250
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=21.28 E-value=89 Score=34.56 Aligned_cols=28 Identities=21% Similarity=0.415 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHhCCcEEEEecCCcccc
Q 012378 31 QEKIEQLAKLIQKSKHLVVFTGAGISTS 58 (465)
Q Consensus 31 ~~ki~~la~lIk~Ak~IVVlTGAGISta 58 (465)
.+.+++++++|.+|++.||+.|.|+..+
T Consensus 193 ~~~i~~a~~~L~~A~rPvi~~G~g~~~~ 220 (574)
T PRK07979 193 KGQIKRALQTLVAAKKPVVYVGGGAINA 220 (574)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCcccc
Confidence 4579999999999999999999999754
No 251
>PRK13936 phosphoheptose isomerase; Provisional
Probab=21.27 E-value=1.6e+02 Score=28.02 Aligned_cols=30 Identities=13% Similarity=0.305 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEecCCcccc
Q 012378 28 QILQEKIEQLAKLIQKSKHLVVFTGAGISTS 58 (465)
Q Consensus 28 ~~l~~ki~~la~lIk~Ak~IVVlTGAGISta 58 (465)
+.+++.++.+++.|.++++|.++ |.|-|..
T Consensus 27 ~~i~~a~~~~~~~l~~a~~I~i~-G~G~S~~ 56 (197)
T PRK13936 27 PPIAQAVELMVQALLNEGKILAC-GNGGSAA 56 (197)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEE-eCcHhHH
Confidence 44667788888888888888777 8887743
No 252
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=21.18 E-value=1e+02 Score=31.55 Aligned_cols=53 Identities=15% Similarity=0.060 Sum_probs=40.0
Q ss_pred hccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECC-CCCCCCCcccEEEEC
Q 012378 199 CKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNL-QKTPKDKKASLVIHG 251 (465)
Q Consensus 199 ~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl-~~t~~d~~adl~I~g 251 (465)
+..-|++|++-.|..++........+++.|+++|.|-- ...+....+|+.|.-
T Consensus 124 l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~tIaIT~~~~s~La~~aD~~I~~ 177 (291)
T TIGR00274 124 LTKNDVVVGIAASGRTPYVIAGLQYARSLGALTISIACNPKSAASEIADIAIET 177 (291)
T ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCChhHHhCCEEEec
Confidence 56779999999999988877777788899998877643 334555567777654
No 253
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=20.86 E-value=46 Score=26.93 Aligned_cols=12 Identities=50% Similarity=0.861 Sum_probs=7.2
Q ss_pred EEEEecCCcccc
Q 012378 47 LVVFTGAGISTS 58 (465)
Q Consensus 47 IVVlTGAGISta 58 (465)
|++..|+|+||+
T Consensus 2 IlvvC~~Gi~TS 13 (90)
T PF02302_consen 2 ILVVCGSGIGTS 13 (90)
T ss_dssp EEEEESSSSHHH
T ss_pred EEEECCChHHHH
Confidence 556666666654
No 254
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=20.79 E-value=53 Score=28.76 Aligned_cols=14 Identities=43% Similarity=0.684 Sum_probs=7.8
Q ss_pred CcEEEEecCCcccc
Q 012378 45 KHLVVFTGAGISTS 58 (465)
Q Consensus 45 k~IVVlTGAGISta 58 (465)
++|+.+.+||+||+
T Consensus 2 k~IlLvC~aGmSTS 15 (102)
T COG1440 2 KKILLVCAAGMSTS 15 (102)
T ss_pred ceEEEEecCCCcHH
Confidence 34555666666653
No 255
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=20.67 E-value=88 Score=34.70 Aligned_cols=26 Identities=15% Similarity=0.397 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhCCcEEEEecCCcc
Q 012378 31 QEKIEQLAKLIQKSKHLVVFTGAGIS 56 (465)
Q Consensus 31 ~~ki~~la~lIk~Ak~IVVlTGAGIS 56 (465)
.+.+++++++|++|++.||++|.|+.
T Consensus 187 ~~~v~~~~~~L~~AkrPvil~G~g~~ 212 (575)
T TIGR02720 187 VEAVTRAVQTLKAAERPVIYYGIGAR 212 (575)
T ss_pred HHHHHHHHHHHHcCCCcEEEECcchh
Confidence 45799999999999999999999996
No 256
>PF10122 Mu-like_Com: Mu-like prophage protein Com; InterPro: IPR019294 Members of this entry belong to the Com family of proteins that act as translational regulators of mom [, ].
Probab=20.62 E-value=31 Score=26.57 Aligned_cols=32 Identities=19% Similarity=0.328 Sum_probs=18.2
Q ss_pred CccccCCCCCCcccchhhhhhhccccCCCCCCCCCCCCc
Q 012378 137 SFMEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAK 175 (465)
Q Consensus 137 l~~~~C~~C~~~y~rd~~~~~i~~~~~~P~C~~p~CGg~ 175 (465)
+...+|..|++-..+--.+..+ --+| |+|+..
T Consensus 2 ~~eiRC~~CnklLa~~g~~~~l-----eIKC--pRC~ti 33 (51)
T PF10122_consen 2 LKEIRCGHCNKLLAKAGEVIEL-----EIKC--PRCKTI 33 (51)
T ss_pred CcceeccchhHHHhhhcCccEE-----EEEC--CCCCcc
Confidence 4567899999865442111111 1268 788864
No 257
>COG4821 Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain [General function prediction only]
Probab=20.57 E-value=1.4e+02 Score=29.51 Aligned_cols=39 Identities=15% Similarity=0.203 Sum_probs=30.9
Q ss_pred HHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEEC
Q 012378 197 KHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVN 235 (465)
Q Consensus 197 ~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViIN 235 (465)
..++..|+++++-+|..-+--..+...++..|+++|.+-
T Consensus 100 ~~i~~~DVliviSnSGrNpvpie~A~~~rekGa~vI~vT 138 (243)
T COG4821 100 LQIRPNDVLIVISNSGRNPVPIEVAEYAREKGAKVIAVT 138 (243)
T ss_pred hcCCCCCEEEEEeCCCCCCcchHHHHHHHhcCCeEEEEe
Confidence 456788999999999876544566677889999998874
No 258
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=20.54 E-value=97 Score=34.66 Aligned_cols=27 Identities=30% Similarity=0.578 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhCCcEEEEecCCccc
Q 012378 31 QEKIEQLAKLIQKSKHLVVFTGAGIST 57 (465)
Q Consensus 31 ~~ki~~la~lIk~Ak~IVVlTGAGISt 57 (465)
.+.+++++++|.+|++.+|+.|.|+..
T Consensus 218 ~~~i~~~~~~L~~AkrPlIl~G~g~~~ 244 (612)
T PRK07789 218 GKQIREAAKLIAAARRPVLYVGGGVIR 244 (612)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCccc
Confidence 356999999999999999999999954
No 259
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=20.10 E-value=1.1e+02 Score=31.77 Aligned_cols=54 Identities=9% Similarity=-0.076 Sum_probs=40.5
Q ss_pred hccCCEEEEEccCCCccccCcccHHHhcCCCeEEEE-CCCCCCCCCcccEEEECc
Q 012378 199 CKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIV-NLQKTPKDKKASLVIHGF 252 (465)
Q Consensus 199 ~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViI-Nl~~t~~d~~adl~I~g~ 252 (465)
+.+.|++|.+--|..+.-.......++++|+++|.| |...+++.+.+|+.|.-.
T Consensus 90 ~~~~~lvI~iS~SGeT~e~i~al~~ak~~Ga~~I~IT~~~~S~L~~~ad~~l~~~ 144 (340)
T PRK11382 90 LDDRCAVIGVSDYGKTEEVIKALELGRACGALTAAFTKRADSPITSAAEFSIDYQ 144 (340)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEECCCCChHHHhCCEEEEeC
Confidence 456789999977777776666667788888887665 666778888888877555
No 260
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=20.03 E-value=1e+02 Score=33.90 Aligned_cols=29 Identities=7% Similarity=0.143 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEecCCccc
Q 012378 29 ILQEKIEQLAKLIQKSKHLVVFTGAGIST 57 (465)
Q Consensus 29 ~l~~ki~~la~lIk~Ak~IVVlTGAGISt 57 (465)
...+.+++++++|++|++.+++.|.|+..
T Consensus 186 ~~~~~v~~~~~~l~~AkrPvi~~G~g~~~ 214 (535)
T TIGR03394 186 ALDACADEVLARMRSATSPVMMVCVEVRR 214 (535)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEChhhcc
Confidence 45678999999999999999999999964
Done!