Query 012378
Match_columns 465
No_of_seqs 241 out of 1289
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 08:17:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012378.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012378hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3k35_A NAD-dependent deacetyla 100.0 3.7E-77 1.3E-81 601.3 22.7 272 2-274 2-279 (318)
2 3pki_A NAD-dependent deacetyla 100.0 2E-76 6.7E-81 601.6 21.3 271 2-273 2-278 (355)
3 1yc5_A NAD-dependent deacetyla 100.0 3.7E-62 1.3E-66 477.3 16.5 229 33-266 2-245 (246)
4 3u31_A SIR2A, transcriptional 100.0 2.4E-62 8.1E-67 489.4 10.9 245 12-264 15-279 (290)
5 1ma3_A SIR2-AF2, transcription 100.0 1.8E-61 6.3E-66 474.2 16.2 230 31-265 2-247 (253)
6 3riy_A NAD-dependent deacetyla 100.0 3.2E-61 1.1E-65 477.6 13.3 227 33-261 10-272 (273)
7 3glr_A NAD-dependent deacetyla 100.0 1.1E-60 3.7E-65 476.2 15.6 230 33-267 10-266 (285)
8 1q14_A HST2 protein; histone d 100.0 1.8E-60 6E-65 488.5 17.5 246 19-267 1-288 (361)
9 1m2k_A Silent information regu 100.0 5.6E-61 1.9E-65 469.8 12.9 223 35-265 3-241 (249)
10 1q1a_A HST2 protein; ternary c 100.0 3.3E-60 1.1E-64 473.5 17.7 236 29-267 3-280 (289)
11 2hjh_A NAD-dependent histone d 100.0 5.9E-59 2E-63 476.6 21.4 237 33-272 35-324 (354)
12 4iao_A NAD-dependent histone d 100.0 1.6E-58 5.5E-63 485.3 21.9 236 33-271 173-461 (492)
13 1j8f_A SIRT2, sirtuin 2, isofo 100.0 6.7E-58 2.3E-62 463.6 17.4 231 33-267 30-305 (323)
14 1s5p_A NAD-dependent deacetyla 100.0 3.5E-58 1.2E-62 446.6 11.2 211 44-264 1-230 (235)
15 3qrl_A Transcription initiatio 96.3 0.012 4E-07 52.6 8.2 113 275-391 10-136 (140)
16 3rls_A YAF9, protein AF-9 homo 96.1 0.017 5.8E-07 53.4 8.5 84 289-375 30-113 (175)
17 2c31_A Oxalyl-COA decarboxylas 92.6 0.27 9.4E-06 52.2 8.6 71 195-265 266-338 (568)
18 2q28_A Oxalyl-COA decarboxylas 91.6 0.37 1.3E-05 51.1 8.1 69 195-265 264-334 (564)
19 1ybh_A Acetolactate synthase, 91.0 0.45 1.6E-05 50.8 8.1 70 194-265 271-342 (590)
20 3lq1_A 2-succinyl-5-enolpyruvy 90.6 0.49 1.7E-05 50.5 7.9 69 195-265 283-353 (578)
21 2pgn_A Cyclohexane-1,2-dione h 90.4 0.46 1.6E-05 50.8 7.4 69 194-265 264-334 (589)
22 2iht_A Carboxyethylarginine sy 90.0 0.48 1.6E-05 50.5 7.2 69 194-265 280-351 (573)
23 1ozh_A ALS, acetolactate synth 89.6 0.59 2E-05 49.7 7.5 68 194-265 267-336 (566)
24 4feg_A Pyruvate oxidase; carba 89.5 0.63 2.2E-05 49.9 7.7 68 194-265 269-338 (603)
25 3eya_A Pyruvate dehydrogenase 89.1 0.6 2E-05 49.4 7.0 65 194-265 258-324 (549)
26 2uz1_A Benzaldehyde lyase; thi 88.8 0.62 2.1E-05 49.4 6.9 66 199-265 267-334 (563)
27 3hww_A 2-succinyl-5-enolpyruvy 88.5 0.63 2.2E-05 49.4 6.7 65 194-260 271-337 (556)
28 2pan_A Glyoxylate carboligase; 86.9 0.7 2.4E-05 49.6 5.9 69 194-264 286-356 (616)
29 2x7j_A 2-succinyl-5-enolpyruvy 86.5 1.2 4.2E-05 47.7 7.5 67 196-265 305-373 (604)
30 1v5e_A Pyruvate oxidase; oxido 85.8 1.5 5.2E-05 46.9 7.8 67 194-265 262-331 (590)
31 1o97_D Electron transferring f 85.6 0.78 2.7E-05 45.9 5.1 58 202-264 260-318 (320)
32 1q6z_A BFD, BFDC, benzoylforma 85.2 0.68 2.3E-05 48.7 4.7 71 194-265 259-330 (528)
33 1t9b_A Acetolactate synthase, 84.6 1.5 5.3E-05 47.9 7.3 71 195-265 350-429 (677)
34 1efv_A Electron transfer flavo 80.0 2.7 9.3E-05 41.9 6.5 59 202-265 254-313 (315)
35 1efp_A ETF, protein (electron 78.2 2.9 9.8E-05 41.5 6.0 58 202-264 249-307 (307)
36 2vk8_A Pyruvate decarboxylase 74.8 3.1 0.00011 43.9 5.5 67 194-264 271-337 (563)
37 2vbi_A Pyruvate decarboxylase; 72.5 3.7 0.00013 43.4 5.4 67 195-265 270-336 (566)
38 1pno_A NAD(P) transhydrogenase 72.1 8.6 0.0003 35.3 6.9 73 192-264 89-179 (180)
39 2wvg_A PDC, pyruvate decarboxy 71.3 3.8 0.00013 43.4 5.1 67 195-265 270-336 (568)
40 1djl_A Transhydrogenase DIII; 70.3 9.2 0.00032 35.9 6.8 74 192-265 111-202 (207)
41 1ovm_A Indole-3-pyruvate decar 69.9 4.5 0.00015 42.5 5.3 67 194-265 269-335 (552)
42 2fsv_C NAD(P) transhydrogenase 69.8 9 0.00031 35.8 6.6 73 192-264 112-202 (203)
43 1d4o_A NADP(H) transhydrogenas 68.6 10 0.00035 34.9 6.5 74 192-265 88-179 (184)
44 2lcq_A Putative toxin VAPC6; P 66.6 1.9 6.5E-05 38.5 1.3 28 139-177 132-159 (165)
45 2vpz_A Thiosulfate reductase; 65.2 4.2 0.00014 44.7 4.1 54 199-252 197-253 (765)
46 2k5c_A Uncharacterized protein 64.1 5.1 0.00017 32.6 3.2 56 137-200 6-79 (95)
47 2vbf_A Branched-chain alpha-ke 63.8 3.1 0.00011 44.0 2.6 67 194-264 288-354 (570)
48 2e7z_A Acetylene hydratase AHY 63.7 3.6 0.00012 44.9 3.1 52 199-250 158-212 (727)
49 2bru_C NAD(P) transhydrogenase 60.1 8 0.00027 35.6 4.2 72 193-264 97-186 (186)
50 2ivf_A Ethylbenzene dehydrogen 55.5 5.3 0.00018 45.4 2.7 55 198-252 243-299 (976)
51 1h0h_A Formate dehydrogenase ( 55.2 6.1 0.00021 45.0 3.2 54 198-251 181-236 (977)
52 2nxw_A Phenyl-3-pyruvate decar 51.3 16 0.00053 38.7 5.4 68 194-265 282-349 (565)
53 6rxn_A Rubredoxin; electron tr 51.1 8.7 0.0003 27.7 2.3 36 137-175 2-39 (46)
54 2iv2_X Formate dehydrogenase H 50.6 4 0.00014 44.5 0.6 55 198-252 163-219 (715)
55 2kdx_A HYPA, hydrogenase/ureas 47.7 8 0.00027 32.8 2.0 27 138-175 72-99 (119)
56 2nap_A Protein (periplasmic ni 46.7 6.6 0.00022 42.7 1.6 55 198-252 163-221 (723)
57 3trj_A Phosphoheptose isomeras 46.0 21 0.00072 32.5 4.7 57 197-253 110-170 (201)
58 3cf4_G Acetyl-COA decarboxylas 46.0 14 0.00048 32.9 3.4 23 34-56 24-46 (170)
59 1kqf_A FDH-N alpha, formate de 45.8 7.6 0.00026 44.4 2.0 54 198-251 219-275 (1015)
60 1eu1_A Dimethyl sulfoxide redu 44.4 7 0.00024 43.0 1.4 53 198-250 174-237 (780)
61 1tk9_A Phosphoheptose isomeras 43.9 13 0.00043 32.8 2.8 57 196-252 105-162 (188)
62 3cf4_G Acetyl-COA decarboxylas 43.6 8.3 0.00028 34.4 1.5 63 197-265 103-168 (170)
63 4ayb_P DNA-directed RNA polyme 39.0 12 0.00041 27.3 1.4 30 139-175 3-32 (48)
64 1q16_A Respiratory nitrate red 38.9 8.5 0.00029 45.2 1.0 54 198-251 243-298 (1247)
65 3a43_A HYPD, hydrogenase nicke 37.8 11 0.00038 33.0 1.4 17 136-152 67-83 (139)
66 2yva_A DNAA initiator-associat 36.2 23 0.00077 31.4 3.2 57 197-253 105-165 (196)
67 4rxn_A Rubredoxin; electron tr 36.1 32 0.0011 25.5 3.5 14 138-151 2-15 (54)
68 1ti6_A Pyrogallol hydroxytrans 35.7 10 0.00035 42.4 1.0 54 197-250 204-265 (875)
69 3i9v_3 NADH-quinone oxidoreduc 35.3 15 0.0005 40.8 2.2 56 196-252 387-469 (783)
70 2i2w_A Phosphoheptose isomeras 34.8 34 0.0012 31.0 4.2 57 197-253 127-184 (212)
71 1tmo_A TMAO reductase, trimeth 34.1 13 0.00045 41.1 1.5 52 199-250 208-274 (829)
72 1lko_A Rubrerythrin all-iron(I 34.0 15 0.00051 33.7 1.7 28 137-175 153-180 (191)
73 3ml1_A NAPA, periplasmic nitra 33.9 17 0.00059 40.3 2.4 54 198-251 175-232 (802)
74 3pwf_A Rubrerythrin; non heme 32.9 17 0.00059 32.9 1.8 26 138-175 137-162 (170)
75 1dx8_A Rubredoxin; electron tr 31.9 31 0.0011 26.9 2.9 16 136-151 4-19 (70)
76 2xbl_A Phosphoheptose isomeras 29.8 38 0.0013 29.8 3.6 58 197-254 112-170 (198)
77 2gmg_A Hypothetical protein PF 29.4 30 0.001 29.2 2.6 27 139-175 67-93 (105)
78 1e8j_A Rubredoxin; iron-sulfur 29.2 33 0.0011 25.2 2.5 14 138-151 2-15 (52)
79 2xhz_A KDSD, YRBH, arabinose 5 28.6 22 0.00075 31.1 1.7 53 199-251 94-147 (183)
80 1e2b_A Enzyme IIB-cellobiose; 28.6 17 0.00058 30.2 0.9 14 45-58 4-17 (106)
81 3sho_A Transcriptional regulat 28.1 23 0.00079 31.1 1.8 58 195-252 81-139 (187)
82 3fxa_A SIS domain protein; str 26.6 25 0.00084 31.4 1.7 54 198-251 89-143 (201)
83 3na7_A HP0958; flagellar bioge 26.6 37 0.0013 32.3 3.1 42 129-177 192-233 (256)
84 1twf_L ABC10-alpha, DNA-direct 26.6 32 0.0011 26.8 2.1 28 138-175 27-54 (70)
85 2v3b_B Rubredoxin 2, rubredoxi 24.7 29 0.00099 25.8 1.5 14 138-151 2-15 (55)
86 1ytl_A Acetyl-COA decarboxylas 24.7 34 0.0012 31.0 2.3 65 199-265 106-172 (174)
87 2epq_A POZ-, at HOOK-, and zin 24.4 50 0.0017 21.4 2.6 38 134-173 5-45 (45)
88 1jeo_A MJ1247, hypothetical pr 24.3 49 0.0017 28.7 3.3 51 199-250 80-131 (180)
89 2kn9_A Rubredoxin; metalloprot 23.3 35 0.0012 27.5 1.8 15 137-151 25-39 (81)
90 3cvj_A Putative phosphoheptose 22.9 27 0.00093 32.3 1.3 37 199-235 106-142 (243)
91 1x92_A APC5045, phosphoheptose 22.7 64 0.0022 28.5 3.8 57 197-253 109-169 (199)
92 3etn_A Putative phosphosugar i 22.7 34 0.0012 31.4 1.9 55 197-251 102-159 (220)
93 2yva_A DNAA initiator-associat 22.4 65 0.0022 28.3 3.7 31 28-59 25-55 (196)
94 3dnf_A ISPH, LYTB, 4-hydroxy-3 21.8 1.1E+02 0.0039 30.1 5.5 87 178-265 184-279 (297)
95 1s24_A Rubredoxin 2; electron 21.4 34 0.0012 27.9 1.4 15 137-151 33-47 (87)
No 1
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding domain, structural genomics, struc genomics consortium, SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.7e-77 Score=601.31 Aligned_cols=272 Identities=51% Similarity=0.893 Sum_probs=236.3
Q ss_pred CccccccCCCccCCCCCCCCCcCCChHHHHHHHHHHHHHHHhCCcEEEEecCCccccCCCCCccCCCcccccccCCCCCc
Q 012378 2 SLGYAEKLSYIEDVGNVGMAEFFDSPQILQEKIEQLAKLIQKSKHLVVFTGAGISTSCGIPDFRGPNGIWTLQREGKPLP 81 (465)
Q Consensus 2 s~~ya~~l~~~~~~g~~g~~e~~d~~~~l~~ki~~la~lIk~Ak~IVVlTGAGIStaSGIPDFRg~~GlW~~~~~~~~~p 81 (465)
|+|||++||+|+|||+||.||+||+++++++++++|+++|++|++|||+|||||||+|||||||+++|+|+..+.+. .|
T Consensus 2 s~~ya~~l~~~~~~g~~~~~e~~d~p~~l~~~i~~l~~~i~~a~~ivvlTGAGISteSGIPdFR~~~Glw~~~~~~~-~p 80 (318)
T 3k35_A 2 SVNYAAGLSPYADKGKCGLPEIFDPPEELERKVWELARLVWQSSSVVFHTGAGISTASGIPDFRGPHGVWTMEERGL-AP 80 (318)
T ss_dssp -------------CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCSCEEEEECGGGSGGGTCCCSSSTTCHHHHHTTTC-CC
T ss_pred ccchhhhCCcccccCccCCccccCCHHHHHHHHHHHHHHHHhCCCEEEEeccccChhhCCCccccCCCcchhhhccC-CH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999765443 46
Q ss_pred ccccccccCCCCHHHHHHHHHHHcCCceEEEeecccchhhhcCCCCCceEEcCCCCccccCCCCCCcccchhhhhhhccc
Q 012378 82 EASLPFHRAMPGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFRDFEVETIGLK 161 (465)
Q Consensus 82 ~~~~~f~~a~Pn~~H~aLa~Le~~G~l~~VITQNIDgLH~rAG~p~~kViELHGnl~~~~C~~C~~~y~rd~~~~~i~~~ 161 (465)
+..+.|..++||.+|++|++|++.|++++||||||||||++||++.++|+|||||++..+|..|++.|.++.........
T Consensus 81 ~~~~~f~~a~Pn~~H~aLa~Le~~g~~~~viTQNIDgLh~rAG~~~~~VielHGsl~~~~C~~C~~~~~~~~~~~~~~~~ 160 (318)
T 3k35_A 81 KFDTTFESARPTQTHMALVQLERVGLLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECAKCKTQYVRDTVVGTMGLK 160 (318)
T ss_dssp CCSSCTTTCCCCHHHHHHHHHHHTTCCCEEEECCCSCHHHHBTCCGGGEEETTCCTTEEEETTTCCEEECSSCCSCCSSC
T ss_pred HHHHHhhhCCCCHHHHHHHHHHHcCCceEEEEecccchHhhcCCCccCEEEeCCCCCeeEeCCCCCccchHHhhhhcccC
Confidence 66678899999999999999999999999999999999999999888999999999999999999998776543322223
Q ss_pred cCCCCCCC------CCCCCcccCcEEeCCCCCChhhhhHHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEEC
Q 012378 162 ETSRRCSD------LKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVN 235 (465)
Q Consensus 162 ~~~P~C~~------p~CGg~LrP~VV~FGE~lp~~~~~~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViIN 235 (465)
+++|.|+. +.|||.|||+||||||++|.+.++.|.+++++|||+|||||||+|+|+++||..+.+.|+++|+||
T Consensus 161 p~~~~C~~~~~~~c~~CgG~LRPdVV~FGE~lP~~~~~~a~~~~~~aDllLViGTSL~V~Paa~l~~~a~~~G~~vviIN 240 (318)
T 3k35_A 161 ATGRLCTVAKARGLRACRGELRDTILDWEDSLPDRDLALADEASRNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVN 240 (318)
T ss_dssp EEEEECCC--------CCCEEEECCCCTTCCCCHHHHHHHHHHHHTCSEEEEESCCCCSTTGGGHHHHHHHTTCEEEEEC
T ss_pred CCCCcCcccccccccCcCCeeCCCEEEccCcCCHHHHHHHHHHHhcCCEEEEEccCCCchhhhhhHHHHHhcCCEEEEEC
Confidence 33456731 479999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcccEEEECcHHHHHHHHHHHhccCCCCcccc
Q 012378 236 LQKTPKDKKASLVIHGFVDKVVAGVMDLLNLRIPPYIRI 274 (465)
Q Consensus 236 l~~t~~d~~adl~I~g~~devL~~L~~~L~l~iP~~~~~ 274 (465)
+++|+.|..+|++|+++++++|+.|++.||++||+|..-
T Consensus 241 ~~~t~~d~~adl~i~g~~~evl~~L~~~Lg~~iP~~~~~ 279 (318)
T 3k35_A 241 LQPTKHDRHADLRIHGYVDEVMTRLMKHLGLEIPAWDGP 279 (318)
T ss_dssp SSCCTTGGGCSEEECSCHHHHHHHHHHHHTCCCCCCCSC
T ss_pred CCCCCCCCcccEEEeCCHHHHHHHHHHHhCCCCCCCCCC
Confidence 999999999999999999999999999999999999654
No 2
>3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural genomics, structural genomics consortium, SGC, hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A*
Probab=100.00 E-value=2e-76 Score=601.56 Aligned_cols=271 Identities=52% Similarity=0.901 Sum_probs=238.6
Q ss_pred CccccccCCCccCCCCCCCCCcCCChHHHHHHHHHHHHHHHhCCcEEEEecCCccccCCCCCccCCCcccccccCCCCCc
Q 012378 2 SLGYAEKLSYIEDVGNVGMAEFFDSPQILQEKIEQLAKLIQKSKHLVVFTGAGISTSCGIPDFRGPNGIWTLQREGKPLP 81 (465)
Q Consensus 2 s~~ya~~l~~~~~~g~~g~~e~~d~~~~l~~ki~~la~lIk~Ak~IVVlTGAGIStaSGIPDFRg~~GlW~~~~~~~~~p 81 (465)
|+|||++||+|+|||+||+||+||++++++++++.|+++|++|++|||+|||||||+|||||||+++|+|+....+. .|
T Consensus 2 s~~ya~~ls~~~~kg~~g~~E~~D~p~~l~~~i~~la~~i~~a~~iVvlTGAGISteSGIPDFR~~~Glw~~~~~~~-~p 80 (355)
T 3pki_A 2 SVNYAAGLSPYADKGKCGLPEIFDPPEELERKVWELARLVWQSSSVVFHTGAGISTASGIPDFRGPHGVWTMEERGL-AP 80 (355)
T ss_dssp -----------CCCCSCSCCCCCCCHHHHHHHHHHHHHHHHHCSSEEEEECGGGSGGGTCCCSSSTTCHHHHHHTTC-CC
T ss_pred ccchhhhCCcccccCcCCCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEeccccchhhCCCccccCCCccchhhccC-Ch
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999765443 36
Q ss_pred ccccccccCCCCHHHHHHHHHHHcCCceEEEeecccchhhhcCCCCCceEEcCCCCccccCCCCCCcccchhhhhhhccc
Q 012378 82 EASLPFHRAMPGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFRDFEVETIGLK 161 (465)
Q Consensus 82 ~~~~~f~~a~Pn~~H~aLa~Le~~G~l~~VITQNIDgLH~rAG~p~~kViELHGnl~~~~C~~C~~~y~rd~~~~~i~~~ 161 (465)
+..+.|..++||.+|++|++|++.|++.+||||||||||++||++.++|+|||||++..+|..|++.|.++.....+...
T Consensus 81 ~~~~~f~~a~Pn~~H~aLa~Le~~g~l~~viTQNIDgLh~rAG~~~~~VieLHGsl~~~~C~~C~~~~~~~~~~~~~~~~ 160 (355)
T 3pki_A 81 KFDTTFESARPTQTHMALVQLERVGLLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECAKCKTQYVRDTVVGTMGLK 160 (355)
T ss_dssp CCSSCTTTCCCCHHHHHHHHHHHTTCCSEEEECCCSCHHHHEEEEGGGEEETTCCTTEEEETTTCCEEEBSSCCSCCSSC
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHcCCCcEEEEecccchHhhcCCCcccEEEeCCCCCceeeCCCCCccchHHhhhhcccC
Confidence 66677899999999999999999999999999999999999999888999999999999999999998776543332222
Q ss_pred cCCCCCC------CCCCCCcccCcEEeCCCCCChhhhhHHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEEC
Q 012378 162 ETSRRCS------DLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVN 235 (465)
Q Consensus 162 ~~~P~C~------~p~CGg~LrP~VV~FGE~lp~~~~~~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViIN 235 (465)
+++|.|+ ++.|||.|||+||||||++|.+.++.|.+++++|||+|||||||+|+|+++||..+.+.|+++|+||
T Consensus 161 ~~~~~C~~~~~~~~~~CgG~LRPdVV~FGE~lP~~~~~~A~~~~~~aDllLViGTSL~V~Paa~Lp~~a~~~G~~vviIN 240 (355)
T 3pki_A 161 ATGRLCTVAKARGLRACRGELRDTILDWEDSLPDRDLALADEASRNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVN 240 (355)
T ss_dssp EEEEECCCCCBTTBCCCCCEEEECCCCTTSCCCHHHHHHHHHHHHHCSEEEEESCCCCSTTGGGTTHHHHHTTCEEEEEC
T ss_pred CCCCccccccccccccCCCccCCCEEECCCcCCHHHHHHHHHHHhcCCEEEEEeeCCCchhhhhhHHHHHhcCCEEEEEC
Confidence 3345663 1479999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcccEEEECcHHHHHHHHHHHhccCCCCccc
Q 012378 236 LQKTPKDKKASLVIHGFVDKVVAGVMDLLNLRIPPYIR 273 (465)
Q Consensus 236 l~~t~~d~~adl~I~g~~devL~~L~~~L~l~iP~~~~ 273 (465)
+++|+.|..+|++|+|+++++|+.|++.||++||+|..
T Consensus 241 ~~pT~~d~~adl~i~g~a~evl~~L~~~Lg~~iP~~~~ 278 (355)
T 3pki_A 241 LQPTKHDRHADLRIHGYVDEVMTRLMEHLGLEIPAWDG 278 (355)
T ss_dssp SSCCTTGGGCSEEECSCHHHHHHHHHHHTTCCCCCCCS
T ss_pred CCCCCCCCccCEEEeCCHHHHHHHHHHHhCCCCCCCCC
Confidence 99999999999999999999999999999999999964
No 3
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=100.00 E-value=3.7e-62 Score=477.25 Aligned_cols=229 Identities=36% Similarity=0.587 Sum_probs=195.3
Q ss_pred HHHHHHHHHHhCCcEEEEecCCccccCCCCCccCCCcccccccCCC-------CCcccccc--------cccCCCCHHHH
Q 012378 33 KIEQLAKLIQKSKHLVVFTGAGISTSCGIPDFRGPNGIWTLQREGK-------PLPEASLP--------FHRAMPGMTHM 97 (465)
Q Consensus 33 ki~~la~lIk~Ak~IVVlTGAGIStaSGIPDFRg~~GlW~~~~~~~-------~~p~~~~~--------f~~a~Pn~~H~ 97 (465)
++++++++|++|++|||+|||||||+||||||||++|+|+.+.... ..|+..|. +..++||++|+
T Consensus 2 ~i~~l~~~l~~a~~ivv~tGAGiS~~SGIpdfR~~~Glw~~~~~~~~~~~~f~~~p~~~~~~~~~~~~~~~~~~Pn~~H~ 81 (246)
T 1yc5_A 2 KMKEFLDLLNESRLTVTLTGAGISTPSGIPDFRGPNGIYKKYSQNVFDIDFFYSHPEEFYRFAKEGIFPMLQAKPNLAHV 81 (246)
T ss_dssp CCHHHHHHHHHCSSEEEEECGGGTGGGTCCCC-----------CCTTBHHHHHHCHHHHHHHHHHHTGGGGGCCCCHHHH
T ss_pred hHHHHHHHHHhCCCEEEEECceeehhhCCCCccCCCcccccCCCceecHHHHhhCHHHHHHHHHHHHHHhccCCCCHHHH
Confidence 3678999999999999999999999999999999999999754311 12333333 24799999999
Q ss_pred HHHHHHHcCCceEEEeecccchhhhcCCCCCceEEcCCCCccccCCCCCCcccchhhhhhhccccCCCCCCCCCCCCccc
Q 012378 98 ALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLR 177 (465)
Q Consensus 98 aLa~Le~~G~l~~VITQNIDgLH~rAG~p~~kViELHGnl~~~~C~~C~~~y~rd~~~~~i~~~~~~P~C~~p~CGg~Lr 177 (465)
+|++|++.|++++||||||||||++||+ ++|+|+|||++..+|..|++.|..+.....+. ...+|+| |.|||.||
T Consensus 82 ~La~L~~~g~~~~viTQNvD~Lh~~AG~--~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~-~~~~p~C--~~Cgg~lr 156 (246)
T 1yc5_A 82 LLAKLEEKGLIEAVITQNIDRLHQRAGS--KKVIELHGNVEEYYCVRCEKKYTVEDVIKKLE-SSDVPLC--DDCNSLIR 156 (246)
T ss_dssp HHHHHHHTTSCSEEEECCCSCHHHHTTC--SCEEETTEEEEEEEETTTCCEEEHHHHHHHTT-TCSSCBC--TTTCCBEE
T ss_pred HHHHHHhcCCCceEEeccccchHhHcCC--CcEEEecCccceeEcCCCCCCCcHHHHHHHhc-cCCCCCC--CCCCCccC
Confidence 9999999999999999999999999998 78999999999999999999887665443332 2257999 79999999
Q ss_pred CcEEeCCCCCChhhhhHHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCCCcccEEEECcHHHHH
Q 012378 178 DTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVV 257 (465)
Q Consensus 178 P~VV~FGE~lp~~~~~~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~~adl~I~g~~devL 257 (465)
|+||||||++|++.+++|.+++++||++|||||||+|+|+++||..+...|+++|+||+++++.|..+++.|+|+++++|
T Consensus 157 P~vv~FgE~lp~~~~~~a~~~~~~adl~lviGTSl~V~P~~~l~~~a~~~g~~~i~IN~~~~~~d~~~~~~i~~~~~~~l 236 (246)
T 1yc5_A 157 PNIVFFGENLPQDALREAIGLSSRASLMIVLGSSLVVYPAAELPLITVRSGGKLVIVNLGETPFDDIATLKYNMDVVEFA 236 (246)
T ss_dssp EEECCBTSBCCHHHHHHHHHHHHHCSEEEEESCCSCEETGGGHHHHHHHHTCEEEEECSSCCTTGGGCSEEECSCHHHHH
T ss_pred cceEECCCCCCHHHHHHHHHHHhcCCEEEEECCCCcchhHHHHHHHHHHcCCeEEEEeCCCCCCCcceeEEEeCCHHHHH
Confidence 99999999999999999999999999999999999999999999988888999999999999999999999999999999
Q ss_pred HHHHHHhcc
Q 012378 258 AGVMDLLNL 266 (465)
Q Consensus 258 ~~L~~~L~l 266 (465)
++|++.||+
T Consensus 237 ~~l~~~lg~ 245 (246)
T 1yc5_A 237 RRVMEEGGI 245 (246)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHcCC
Confidence 999999986
No 4
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue; Zn-binding domain, rossmann fold domain; HET: MYK NAD; 2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Probab=100.00 E-value=2.4e-62 Score=489.36 Aligned_cols=245 Identities=30% Similarity=0.439 Sum_probs=205.4
Q ss_pred ccCCCCCCCCCcCCChHHHHHHHHHHHHHHHhCCcEEEEecCCccccCCCCCccC-CCcccccccCC--------CCCcc
Q 012378 12 IEDVGNVGMAEFFDSPQILQEKIEQLAKLIQKSKHLVVFTGAGISTSCGIPDFRG-PNGIWTLQREG--------KPLPE 82 (465)
Q Consensus 12 ~~~~g~~g~~e~~d~~~~l~~ki~~la~lIk~Ak~IVVlTGAGIStaSGIPDFRg-~~GlW~~~~~~--------~~~p~ 82 (465)
+.++|++ +++|+.+++..+++++|+++|++|++|||+|||||||+|||||||+ ++|+|+.++.. ...|+
T Consensus 15 ~~~~~~~--~~~~~~~~~~~~~i~~l~~~i~~a~~ivvlTGAGiSt~SGIPdFR~~~~Glw~~~~p~~~~~~~~f~~~p~ 92 (290)
T 3u31_A 15 RGSMGNL--MISFLKKDTQSITLEELAKIIKKCKHVVALTGSGTSAESNIPSFRGSSNSIWSKYDPRIYGTIWGFWKYPE 92 (290)
T ss_dssp --------------CCCCEEECHHHHHHHHHTCSSEEEEECGGGTGGGTCCSCTTCTTSGGGGSCHHHHTBHHHHHHCHH
T ss_pred cccccch--hhhccCcchhHHHHHHHHHHHHhCCCEEEEeCCccccccCCccccccccchhhcCCHHHhhCHHhhhhCHH
Confidence 4566766 8999999998899999999999999999999999999999999999 68999865421 12355
Q ss_pred ccccc-------ccCCCCHHHHHHHHHHHcCCceEEEeecccchhhhcCCCCCceEEcCCCCccccCCCCCCcccchhhh
Q 012378 83 ASLPF-------HRAMPGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFRDFEV 155 (465)
Q Consensus 83 ~~~~f-------~~a~Pn~~H~aLa~Le~~G~l~~VITQNIDgLH~rAG~p~~kViELHGnl~~~~C~~C~~~y~rd~~~ 155 (465)
..|.| ..++||++|++|++|++.|++++||||||||||++||+ ++|+|||||++..+|..|++.|..+...
T Consensus 93 ~~w~~~~~~~~~~~a~Pn~~H~aLa~Le~~g~~~~viTQNVDgLh~rAG~--~~vielHGs~~~~~C~~C~~~~~~~~~~ 170 (290)
T 3u31_A 93 KIWEVIRDISSDYEIEINNGHVALSTLESLGYLKSVVTQNVDGLHEASGN--TKVISLHGNVFEAVCCTCNKIVKLNKIM 170 (290)
T ss_dssp HHHHHHHHHHHHSCCCCCHHHHHHHHHHHTTCEEEEEESCCSCHHHHTTC--SCEEETTEEEEEEEETTTCCEEECCTGG
T ss_pred HHHHHHHHHhhhccCCCCHHHHHHHHHHHcCCCceEEEechHHHHHHcCC--CcEEEecCCcCcceeCCCCCcCChhHhh
Confidence 55543 47999999999999999999999999999999999998 7999999999999999999988765432
Q ss_pred hh---hccccCCCCCCCCCCCCcccCcEEeCCCCCChhhhhHHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEE
Q 012378 156 ET---IGLKETSRRCSDLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIV 232 (465)
Q Consensus 156 ~~---i~~~~~~P~C~~p~CGg~LrP~VV~FGE~lp~~~~~~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lV 232 (465)
.. .-....+|+| | |||.|||+||||||++|++.+++|.+++++|||+|||||||+|+|+++||..+.+.|+++|
T Consensus 171 ~~~~~~~~~~~~P~C--~-Cgg~lrPdVV~FGE~lp~~~~~~a~~~~~~aDllLviGTSl~V~Paa~l~~~a~~~g~~~v 247 (290)
T 3u31_A 171 LQKTSHFMHQLPPEC--P-CGGIFKPNIILFGEVVSSDLLKEAEEEIAKCDLLLVIGTSSTVSTATNLCHFACKKKKKIV 247 (290)
T ss_dssp GSTTSSTTTSSSCBC--T-TSCBEEEEECCBTSBCCHHHHHHHHHHHHHCSEEEEESCCSCSHHHHHHHHHHHHTTCCEE
T ss_pred hcccccccccCCCCC--C-CCCEECCeEEEcCCCCCHHHHHHHHHHHhcCCEEEEECcCCcchhHHHHHHHHHHcCCEEE
Confidence 10 1122457999 7 9999999999999999999999999999999999999999999999999999989999999
Q ss_pred EECCCCCCCCC-cccEEEECcHHHHHHHHHHHh
Q 012378 233 IVNLQKTPKDK-KASLVIHGFVDKVVAGVMDLL 264 (465)
Q Consensus 233 iINl~~t~~d~-~adl~I~g~~devL~~L~~~L 264 (465)
+||+++|+.+. .+++.|+|+++++++ +++.|
T Consensus 248 ~IN~~~t~~~~~~~d~~i~g~a~~vl~-~~~~l 279 (290)
T 3u31_A 248 EINISKTYITNKMSDYHVCAKFSELTK-VANIL 279 (290)
T ss_dssp EEESSCCTTTTTTCSEEEESCGGGHHH-HHHHH
T ss_pred EECCCCCCCCCccceEEEECCHHHHHH-HHHHH
Confidence 99999999985 689999999999886 44544
No 5
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=100.00 E-value=1.8e-61 Score=474.25 Aligned_cols=230 Identities=37% Similarity=0.587 Sum_probs=195.8
Q ss_pred HHHHHHHHHHHHhCCcEEEEecCCccccCCCCCccCCCcccccccC--------CCCCcccccccc-------cCCCCHH
Q 012378 31 QEKIEQLAKLIQKSKHLVVFTGAGISTSCGIPDFRGPNGIWTLQRE--------GKPLPEASLPFH-------RAMPGMT 95 (465)
Q Consensus 31 ~~ki~~la~lIk~Ak~IVVlTGAGIStaSGIPDFRg~~GlW~~~~~--------~~~~p~~~~~f~-------~a~Pn~~ 95 (465)
++++++++++|++|++|||+|||||||+||||||||++|+|+.+.. ....|+..|.|+ .++||++
T Consensus 2 ~~~i~~l~~~l~~a~~ivv~tGAGiS~~SGIPdfR~~~Glw~~~~~~~~~~~~~f~~~p~~~~~f~~~~~~~~~~~Pn~~ 81 (253)
T 1ma3_A 2 EDEIRKAAEILAKSKHAVVFTGAGISAESGIPTFRGEDGLWRKYDPEEVASISGFKRNPRAFWEFSMEMKDKLFAEPNPA 81 (253)
T ss_dssp HHHHHHHHHHHHHCSSEEEEECGGGSCC----------CCSCSSCHHHHTBHHHHTTCHHHHHHHHHHTHHHHTCCCCHH
T ss_pred hHHHHHHHHHHHhCCcEEEEEchhhhHhhCCCCcCCCCcccccCChhheecHHHHhcCHHHHHHHHHHHHHhccCCCCHH
Confidence 4679999999999999999999999999999999999999986532 123455555431 3999999
Q ss_pred HHHHHHHHHcCCceEEEeecccchhhhcCCCCCceEEcCCCCccccCCCCCCcccchhhhhhhccccCCCCCCCCCCCC-
Q 012378 96 HMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGA- 174 (465)
Q Consensus 96 H~aLa~Le~~G~l~~VITQNIDgLH~rAG~p~~kViELHGnl~~~~C~~C~~~y~rd~~~~~i~~~~~~P~C~~p~CGg- 174 (465)
|++|++|++.|++++||||||||||++||+ ++|+|||||++..+|..|++.|..+.....+. ...+|+| |.|||
T Consensus 82 H~~La~L~~~g~~~~viTQNvD~Lh~~AG~--~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~-~~~~p~C--~~Cgg~ 156 (253)
T 1ma3_A 82 HYAIAELERMGIVKAVITQNIDMLHQRAGS--RRVLELHGSMDKLDCLDCHETYDWSEFVEDFN-KGEIPRC--RKCGSY 156 (253)
T ss_dssp HHHHHHHHHTTSEEEEEESCCSCHHHHHTC--CSEEETTEEEEEEEETTTCCEEEGGGTHHHHH-TTCCCCC--TTTCCS
T ss_pred HHHHHHHHhcCCCeEEEeccccccHhHhCC--CCEEEeCCCcCeeeeCCCCCcCcHHHHHHHhc-cCCCCCC--CCCCCc
Confidence 999999999999999999999999999998 78999999999999999999887665443332 2247999 79999
Q ss_pred cccCcEEeCCCCCChhhhhHHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCCCcccEEEECcHH
Q 012378 175 KLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVD 254 (465)
Q Consensus 175 ~LrP~VV~FGE~lp~~~~~~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~~adl~I~g~~d 254 (465)
.|||+||||||++|++.++.|.+++++||++|||||||+|+|+++||..+...|+++|+||+++++.|..+++.|+|+++
T Consensus 157 ~lrP~Vv~FgE~lp~~~~~~a~~~~~~adl~lviGTSl~V~P~~~l~~~a~~~g~~~i~iN~~~~~~d~~~~~~i~~~~~ 236 (253)
T 1ma3_A 157 YVKPRVVLFGEPLPQRTLFEAIEEAKHCDAFMVVGSSLVVYPAAELPYIAKKAGAKMIIVNAEPTMADPIFDVKIIGKAG 236 (253)
T ss_dssp CEEEEECCBTSBCCHHHHHHHHHHHHHCSEEEEESCCSCEETGGGHHHHHHHHTCEEEEEESSCCTTGGGCSEEEESCHH
T ss_pred cccceEEEeCCCCCHHHHHHHHHHHHhCCEEEEECCCceeccHHHHHHHHHHcCCeEEEEeCCCCCCCCceeEEEeCCHH
Confidence 99999999999999999999999999999999999999999999999989889999999999999999999999999999
Q ss_pred HHHHHHHHHhc
Q 012378 255 KVVAGVMDLLN 265 (465)
Q Consensus 255 evL~~L~~~L~ 265 (465)
++|+.|++.|.
T Consensus 237 ~~l~~l~~~l~ 247 (253)
T 1ma3_A 237 EVLPKIVEEVK 247 (253)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998774
No 6
>3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase, posttranslational modification, binding domain, rossmann fold domain; HET: SLL NAD; 1.55A {Homo sapiens} SCOP: c.31.1.5 PDB: 3rig_A* 4f4u_A* 4f56_A* 4hda_A* 2b4y_A* 2nyr_A* 4g1c_A*
Probab=100.00 E-value=3.2e-61 Score=477.63 Aligned_cols=227 Identities=28% Similarity=0.486 Sum_probs=197.9
Q ss_pred HHHHHHHHHHhCCcEEEEecCCccccCCCCCccCCCcccccccCC--------CCCccccccc--------ccCCCCHHH
Q 012378 33 KIEQLAKLIQKSKHLVVFTGAGISTSCGIPDFRGPNGIWTLQREG--------KPLPEASLPF--------HRAMPGMTH 96 (465)
Q Consensus 33 ki~~la~lIk~Ak~IVVlTGAGIStaSGIPDFRg~~GlW~~~~~~--------~~~p~~~~~f--------~~a~Pn~~H 96 (465)
++++++++|++|++|||+|||||||+|||||||+++|+|+.++.. ...|+..|.| ..++||++|
T Consensus 10 ~i~~l~~~l~~a~~ivvlTGAGiSt~SGIPdFR~~~Glw~~~~~~~l~~~~~f~~~p~~~w~fy~~~~~~~~~~~Pn~~H 89 (273)
T 3riy_A 10 SMADFRKFFAKAKHIVIISGAGVSAESGVPTFRGAGGYWRKWQAQDLATPLAFAHNPSRVWEFYHYRREVMGSKEPNAGH 89 (273)
T ss_dssp CHHHHHHHHHHCSEEEEEECGGGTGGGTCCCSSSGGGEETTEEHHHHSSHHHHHHCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCcEEEEECcccchhhCCCccccccchhhhCChhhcCCHHHHhhCHHHHHHHHHHHHHHhhhCCCCHHH
Confidence 478899999999999999999999999999999999999865421 1235555544 479999999
Q ss_pred HHHHHHHH----cCCceEEEeecccchhhhcCCCCCceEEcCCCCccccCCCCCCcccchhh--hhhh------------
Q 012378 97 MALVELEK----AGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFRDFE--VETI------------ 158 (465)
Q Consensus 97 ~aLa~Le~----~G~l~~VITQNIDgLH~rAG~p~~kViELHGnl~~~~C~~C~~~y~rd~~--~~~i------------ 158 (465)
++|++|++ .|++++||||||||||++||+ ++|+|||||++..+|..|++.|..... ...+
T Consensus 90 ~~La~Le~~~~~~g~~~~viTQNiDgLh~~AG~--~~vielHG~~~~~~C~~C~~~~~~~~~p~~~~~~~~~~~~~~~~~ 167 (273)
T 3riy_A 90 RAIAECETRLGKQGRRVVVITQNIDELHRKAGT--KNLLEIHGSLFKTRCTSCGVVAENYKSPICPALSGKGAPEPGTQD 167 (273)
T ss_dssp HHHHHHHHHHHTTTCEEEEEESCCSCHHHHHTC--CSEEETTEEEEEEEETTTCCEEECCCSSSSGGGTTCCCCSTTCCC
T ss_pred HHHHHHHHhhhhcCceeEEEEecccchHhhcCC--CCEEEecCcCCeeEcCCCCCcccccccchhhhhhcccCCcccccc
Confidence 99999996 599999999999999999998 799999999999999999998753210 0000
Q ss_pred --ccccCCCCCCCCCCCCcccCcEEeCCCCCChhhhhHHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECC
Q 012378 159 --GLKETSRRCSDLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNL 236 (465)
Q Consensus 159 --~~~~~~P~C~~p~CGg~LrP~VV~FGE~lp~~~~~~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl 236 (465)
-....+|+|+.|.|||.|||+||||||++|++.+++|.+++++|||+|||||||+|+|+++|+..+.+.|+++|+||+
T Consensus 168 ~~~~~~~~P~C~~~~Cgg~lrP~VV~FGE~lp~~~~~~a~~~~~~aDl~lviGTSl~V~Paa~l~~~a~~~g~~~v~IN~ 247 (273)
T 3riy_A 168 ASIPVEKLPRCEEAGCGGLLRPHVVWFGENLDPAILEEVDRELAHCDLCLVVGTSSVVYPAAMFAPQVAARGVPVAEFNT 247 (273)
T ss_dssp CCCCGGGSCBCCGGGCCCBEEEEECCTTSBCCHHHHHHHHHHHHHCSEEEEESCCSCEETGGGHHHHHHHTTCCEEEEES
T ss_pred cccccCCCCCCCCCCCCCeeCCcEEEeCCcCCHHHHHHHHHHHhcCCEEEEEeeCCcchhHHHhHHHHHHCCCEEEEECC
Confidence 012346899545799999999999999999999999999999999999999999999999999888889999999999
Q ss_pred CCCCCCCcccEEEECcHHHHHHHHH
Q 012378 237 QKTPKDKKASLVIHGFVDKVVAGVM 261 (465)
Q Consensus 237 ~~t~~d~~adl~I~g~~devL~~L~ 261 (465)
++|+.|..++++|+|+++++|++|+
T Consensus 248 ~~t~~d~~~~~~i~g~~~~~l~~l~ 272 (273)
T 3riy_A 248 ETTPATNRFRFHFQGPCGTTLPEAL 272 (273)
T ss_dssp SCCTTGGGSSEEEESCHHHHHHHHH
T ss_pred CCCCCCcceeEEEeCCHHHHHHHHh
Confidence 9999999999999999999999885
No 7
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A*
Probab=100.00 E-value=1.1e-60 Score=476.16 Aligned_cols=230 Identities=30% Similarity=0.490 Sum_probs=199.1
Q ss_pred HHHHHHHHHHh--CCcEEEEecCCccccCCCCCccCCC-ccccccc-CCCCCccc-------------cccc------cc
Q 012378 33 KIEQLAKLIQK--SKHLVVFTGAGISTSCGIPDFRGPN-GIWTLQR-EGKPLPEA-------------SLPF------HR 89 (465)
Q Consensus 33 ki~~la~lIk~--Ak~IVVlTGAGIStaSGIPDFRg~~-GlW~~~~-~~~~~p~~-------------~~~f------~~ 89 (465)
.++.++++|++ |++|||+|||||||+||||||||++ |+|+..+ .+.+.|+. .|.| ..
T Consensus 10 ~l~~la~~i~~~~a~~IvvlTGAGISteSGIPdFR~~~~Glw~~~~~~~l~~pe~~~~~~~f~~~P~~f~~~~~~~~~~~ 89 (285)
T 3glr_A 10 SLQDVAELIRARACQRVVVMVGAGISTPSGIPDFRSPGSGLYSNLQQYDLPYPEAIFELPFFFHNPKPFFTLAKELYPGN 89 (285)
T ss_dssp CHHHHHHHHHTTSCCCEEEEECGGGTGGGTCCCTTSSSSHHHHHHHTTCCSSGGGGGCHHHHHHCCHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHhcCCCeEEEEeCCccchhhCCCCcccCCCccccchhccCCCCHHHHhCHHHHhhCcHHHHHHHHHhhhcc
Confidence 48899999997 8999999999999999999999995 9998543 23333332 2222 26
Q ss_pred CCCCHHHHHHHHHHHcCCceEEEeecccchhhhcCCCCCceEEcCCCCccccCCCCCCcccchhhhhhhccccCCCCCCC
Q 012378 90 AMPGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFRDFEVETIGLKETSRRCSD 169 (465)
Q Consensus 90 a~Pn~~H~aLa~Le~~G~l~~VITQNIDgLH~rAG~p~~kViELHGnl~~~~C~~C~~~y~rd~~~~~i~~~~~~P~C~~ 169 (465)
++||++|++|++|+++|++.+||||||||||++||+|.++|+|||||++..+|..|++.|..+.....+. ...+|+|
T Consensus 90 a~Pn~~H~~La~Le~~g~l~~viTQNIDgLh~rAG~~~~~VielHGs~~~~~C~~C~~~~~~~~~~~~i~-~~~~P~C-- 166 (285)
T 3glr_A 90 YKPNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPASKLVEAHGTFASATCTVCQRPFPGEDIRADVM-ADRVPRC-- 166 (285)
T ss_dssp CCCCHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCGGGEEETTEEEEEEEETTTCCEEEGGGGHHHHH-TTCCCBC--
T ss_pred CCCCHHHHHHHHHHHcCCCceEEeeeecchHhhcCCCcccEEEecCCCCeEEECCCCCcCCHHHHHHHhh-cCCCCCC--
Confidence 8999999999999999999999999999999999999999999999999999999999987664333222 3457999
Q ss_pred CCCCCcccCcEEeCCCCCChhhhhHHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCC----CCCcc
Q 012378 170 LKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTP----KDKKA 245 (465)
Q Consensus 170 p~CGg~LrP~VV~FGE~lp~~~~~~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~----~d~~a 245 (465)
|.|||.|||+||||||++|...+. +.+.+.+|||+|||||||+|+|++.||. +.+.++++|+||++++. .+..+
T Consensus 167 ~~Cgg~lrP~IV~FGE~lp~~~~~-~~~~~~~aDlllviGTSl~V~Paa~l~~-~~~~~~~~v~IN~~~~~~~~~~~~~~ 244 (285)
T 3glr_A 167 PVCTGVVKPDIVFFGEPLPQRFLL-HVVDFPMADLLLILGTSLEVEPFASLTE-AVRSSVPRLLINRDLVGPLAWHPRSR 244 (285)
T ss_dssp TTTCCBEEEEECCTTSBCCGGGGG-HHHHHHHCSEEEEESCCCCEETTGGGGG-SSCTTSCEEEEESSCCTHHHHSCCTT
T ss_pred CCCCCccCCcEEEeCCcCCHHHHH-HHHHHhcCCEEEEeCCCCccccHHHHHH-HHhCCCcEEEECCCCcCccccCCCCc
Confidence 789999999999999999998774 5778899999999999999999999986 44567899999999986 56789
Q ss_pred cEEEECcHHHHHHHHHHHhccC
Q 012378 246 SLVIHGFVDKVVAGVMDLLNLR 267 (465)
Q Consensus 246 dl~I~g~~devL~~L~~~L~l~ 267 (465)
|+.+.|+|++++++|++.|||+
T Consensus 245 d~~~~g~~~~~~~~L~~~lgw~ 266 (285)
T 3glr_A 245 DVAQLGDVVHGVESLVELLGWT 266 (285)
T ss_dssp EEEEESCHHHHHHHHHHHHTCH
T ss_pred cEEEcCCHHHHHHHHHHHhCCH
Confidence 9999999999999999999985
No 8
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5
Probab=100.00 E-value=1.8e-60 Score=488.50 Aligned_cols=246 Identities=26% Similarity=0.443 Sum_probs=198.9
Q ss_pred CCCCcCCChHHHHHHHHHHHHHHHh--CCcEEEEecCCccccCCCCCccCCC-cccccccC-CCCCcc------------
Q 012378 19 GMAEFFDSPQILQEKIEQLAKLIQK--SKHLVVFTGAGISTSCGIPDFRGPN-GIWTLQRE-GKPLPE------------ 82 (465)
Q Consensus 19 g~~e~~d~~~~l~~ki~~la~lIk~--Ak~IVVlTGAGIStaSGIPDFRg~~-GlW~~~~~-~~~~p~------------ 82 (465)
||++...+...++++++.|+++|++ |++|||+|||||||+||||||||++ |+|+.... +...|+
T Consensus 1 ~~~~~~~~~~~~~~~i~~l~~~i~~~~a~~IVvlTGAGISteSGIPdFR~~~~Glw~~~~~~~l~~pe~~~s~~~f~~~P 80 (361)
T 1q14_A 1 GMASMSVSTASTEMSVRKIAAHMKSNPNAKVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDP 80 (361)
T ss_dssp CTTSCCCSSCCHHHHHHHHHHHHHTSTTCCEEEEECGGGTGGGC--------------CCCCCCSSGGGGGBHHHHHHCC
T ss_pred CCCccCCCchhHHHHHHHHHHHHHhccCCcEEEEeCcccchhcCCcccccCcchhhhcccccCCCCHHHhcCHHHHhcCH
Confidence 7888999999999999999999999 9999999999999999999999995 99986432 222232
Q ss_pred -ccccc------ccCCCCHHHHHHHHHHHcCCceEEEeecccchhhhcCCCCCceEEcCCCCccccCCCCCCcccchhhh
Q 012378 83 -ASLPF------HRAMPGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFRDFEV 155 (465)
Q Consensus 83 -~~~~f------~~a~Pn~~H~aLa~Le~~G~l~~VITQNIDgLH~rAG~p~~kViELHGnl~~~~C~~C~~~y~rd~~~ 155 (465)
..|.| ..++||.+|++|++|++.|++++||||||||||++||++.++|+||||+++..+|..|++.|..+...
T Consensus 81 ~~f~~~~~~~~~~~a~Pn~~H~aLa~Le~~g~~~~ViTQNVDgLh~rAG~~~~~VielHGsl~~~~C~~C~~~~~~~~~~ 160 (361)
T 1q14_A 81 LPFYTLAKELYPGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGCGKVYPPQVFK 160 (361)
T ss_dssp HHHHHHHTTTSCCCCCCCHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCGGGEEETTEEEEEEEETTTCCEECTHHHH
T ss_pred HHHHHHHHHHhhCcCCCCHHHHHHHHHHhcCCCcEEEecccchhHhHcCCCcceEEeccccccccCcCCCCccCcHHHHH
Confidence 22322 36899999999999999999999999999999999999888999999999999999999988776544
Q ss_pred hhhccc--cCCCCCCCCCCCCcccCcEEeCCCCCChhhhhHHHH-------------HhccCCEEEEEccCCCccccCcc
Q 012378 156 ETIGLK--ETSRRCSDLKCGAKLRDTVLDWEDALPPKEMNPAEK-------------HCKIADVVLCLGTSLQITPACNL 220 (465)
Q Consensus 156 ~~i~~~--~~~P~C~~p~CGg~LrP~VV~FGE~lp~~~~~~A~~-------------~~~~aDLlLvlGTSL~V~Pa~~L 220 (465)
..+... ..+|+| |.|||.|||+||||||++|...+..+.+ .+.+|||+|||||||+|+|+++|
T Consensus 161 ~~~~~~~~~~~P~C--p~Cgg~lrP~VV~FGE~lp~~~~~~~~~a~~~l~~~i~~~~~~~~aDllLviGTSl~V~Paa~l 238 (361)
T 1q14_A 161 SKLAEHPIKDFVKC--DVCGELVKPAIVFFGEDLPDSFSETWLNDSEWLREKITTSGKHPQQPLVIVVGTSLAVYPFASL 238 (361)
T ss_dssp HHTTSSSCSCCCBC--TTTCCBEEEEECCBTSCCCHHHHHHHHHHHHHHHHC--------CCCEEEEESCCCCSTTGGGH
T ss_pred HHHhhcccCCCCCC--cCCCCEeCCCcccccccCCHHHHHHHHHHHHhhhhcchhhhhhccCCEEEEECCCCCchhHHHH
Confidence 444322 236999 7999999999999999999987766555 57799999999999999999999
Q ss_pred cHHHhcCCCeEEEECCCCCC----CCCcccEEEECcHHHHHHHHHHHhccC
Q 012378 221 PLKCLRGGGKIVIVNLQKTP----KDKKASLVIHGFVDKVVAGVMDLLNLR 267 (465)
Q Consensus 221 p~~a~~~Ga~lViINl~~t~----~d~~adl~I~g~~devL~~L~~~L~l~ 267 (465)
|..+. .|+++|+||+++++ .+..++++|+|+++++|+.|++.|||+
T Consensus 239 ~~~~~-~g~~~v~IN~~~t~~~~~~~~~~d~~i~g~~~evl~~L~~~Lg~~ 288 (361)
T 1q14_A 239 PEEIP-RKVKRVLCNLETVGDFKANKRPTDLIVHQYSDEFAEQLVEELGWQ 288 (361)
T ss_dssp HHHSC-TTSEEEEESSSCCHHHHHTCCTTCEEECSCHHHHHHHHHHHHTCH
T ss_pred HHHHh-cCCeEEEEeCCCccccccCcccccEEEeCCHHHHHHHHHHHcCCh
Confidence 87665 68999999999986 246799999999999999999999975
No 9
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A*
Probab=100.00 E-value=5.6e-61 Score=469.84 Aligned_cols=223 Identities=36% Similarity=0.591 Sum_probs=200.5
Q ss_pred HHHHHHHHhCCcEEEEecCCccccCCCCCccCCCcccccccCC--------CCCccccccc--------ccCCCCHHHHH
Q 012378 35 EQLAKLIQKSKHLVVFTGAGISTSCGIPDFRGPNGIWTLQREG--------KPLPEASLPF--------HRAMPGMTHMA 98 (465)
Q Consensus 35 ~~la~lIk~Ak~IVVlTGAGIStaSGIPDFRg~~GlW~~~~~~--------~~~p~~~~~f--------~~a~Pn~~H~a 98 (465)
++++++|++|++|||+|||||||+||||||||++|+|+.+... ...|+..|.| ..++||++|++
T Consensus 3 ~~l~~~i~~a~~ivvltGAGiS~~SGIPdfR~~~Glw~~~~~~~~~~~~~f~~~p~~~w~~~~~~~~~~~~~~Pn~~H~~ 82 (249)
T 1m2k_A 3 EKLLKTIAESKYLVALTGAGVSAESGIPTFRGKDGLWNRYRPEELANPQAFAKDPEKVWKWYAWRMEKVFNAQPNKAHQA 82 (249)
T ss_dssp HHHHHHHHTCSSEEEEECGGGGGGGTCCCSSSTTCHHHHSCHHHHSSHHHHHHCHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_pred HHHHHHHHhCCCEEEEECchhhhhhCCCCccCCCcCccCCCHHhcccHHHHhcCHHHHHHHHHHHHHHhCcCCCCHHHHH
Confidence 5789999999999999999999999999999999999865320 1234444543 37999999999
Q ss_pred HHHHHHcCCceEEEeecccchhhhcCCCCCceEEcCCCCccccCCCCCCcccchhhhhhhccccCCCCCCCCCCCCcccC
Q 012378 99 LVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLRD 178 (465)
Q Consensus 99 La~Le~~G~l~~VITQNIDgLH~rAG~p~~kViELHGnl~~~~C~~C~~~y~rd~~~~~i~~~~~~P~C~~p~CGg~LrP 178 (465)
|++|++.|++++||||||||||++||+ ++|+|+|||++..+|..|++.|..+..+ . ...+|+| |.|||.|||
T Consensus 83 La~L~~~g~~~~viTQNiDgLh~~AG~--~~v~elHG~~~~~~C~~C~~~~~~~~~~---~-~~~~p~C--~~Cgg~lrP 154 (249)
T 1m2k_A 83 FAELERLGVLKCLITQNVDDLHERAGS--RNVIHLHGSLRVVRCTSCNNSFEVESAP---K-IPPLPKC--DKCGSLLRP 154 (249)
T ss_dssp HHHHHHTTCEEEEEECCCSCHHHHTTC--CSEEETTEEEEEEEESSSSCEEECSSCC---C-SSSCCBC--SSSSSBEEE
T ss_pred HHHHHhCCCCcEEEECCccchhhhcCC--CcEEEecCCcceeEeCCCCCcccchhhc---c-CCCCCCC--CCCCCCcCC
Confidence 999999999999999999999999997 7999999999999999999988665431 1 2247899 799999999
Q ss_pred cEEeCCCCCChhhhhHHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCCCcccEEEECcHHHHHH
Q 012378 179 TVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVVA 258 (465)
Q Consensus 179 ~VV~FGE~lp~~~~~~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~~adl~I~g~~devL~ 258 (465)
+||||||++|++.++++.+++++|||+|||||||+|+|+++||..+...|+++|+||+++++.|..+++.|+|+++++|+
T Consensus 155 ~Vv~FgE~lp~~~~~~a~~~~~~adlllviGTSl~V~P~~~l~~~a~~~g~~~i~IN~~~~~~d~~~~~~i~~~~~~~l~ 234 (249)
T 1m2k_A 155 GVVWAGEMLPPDVLDRAMREVERADVIIVAGTSAVVQPAASLPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVMD 234 (249)
T ss_dssp EECCTTSCCCHHHHHHHHHHHHHCSEEEEESCCSCSTTGGGHHHHHHHTTCEEEEECSSCCTTGGGCSEEECSCHHHHHH
T ss_pred eEEecCCCCCHHHHHHHHHHHhcCCEEEEEccCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCcceeEEEeCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhc
Q 012378 259 GVMDLLN 265 (465)
Q Consensus 259 ~L~~~L~ 265 (465)
.|++.|.
T Consensus 235 ~l~~~l~ 241 (249)
T 1m2k_A 235 ELVRHVR 241 (249)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998775
No 10
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Probab=100.00 E-value=3.3e-60 Score=473.53 Aligned_cols=236 Identities=25% Similarity=0.433 Sum_probs=198.9
Q ss_pred HHHHHHHHHHHHHHh--CCcEEEEecCCccccCCCCCccCCC-ccccccc-CCCCCc-------------cccccc----
Q 012378 29 ILQEKIEQLAKLIQK--SKHLVVFTGAGISTSCGIPDFRGPN-GIWTLQR-EGKPLP-------------EASLPF---- 87 (465)
Q Consensus 29 ~l~~ki~~la~lIk~--Ak~IVVlTGAGIStaSGIPDFRg~~-GlW~~~~-~~~~~p-------------~~~~~f---- 87 (465)
.+++++++++++|++ |++|||+|||||||+||||||||++ |+|+..+ .+...| +..|.|
T Consensus 3 ~~~~~i~~l~~~i~~~~a~~ivvltGAGiSt~SGIPdfR~~~~Glw~~~~~~~l~~~e~~~~~~~f~~~p~~f~~~~~~~ 82 (289)
T 1q1a_A 3 STEMSVRKIAAHMKSNPNAKVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTLAKEL 82 (289)
T ss_dssp CTHHHHHHHHHHHHHSTTSCEEEEECGGGGGGGTCCCSSSTTTSGGGSCGGGCCSSGGGGGBHHHHHHCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCCCCEEEEECCceeHhhCCCCcCCCCCcccccccccCCCCHHHhcCHHHHhcCHHHHHHHHHHH
Confidence 356789999999999 9999999999999999999999995 9998643 222223 222322
Q ss_pred --ccCCCCHHHHHHHHHHHcCCceEEEeecccchhhhcCCCCCceEEcCCCCccccCCCCCCcccchhhhhhhccc--cC
Q 012378 88 --HRAMPGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFRDFEVETIGLK--ET 163 (465)
Q Consensus 88 --~~a~Pn~~H~aLa~Le~~G~l~~VITQNIDgLH~rAG~p~~kViELHGnl~~~~C~~C~~~y~rd~~~~~i~~~--~~ 163 (465)
..++||.+|++|++|++.|++++||||||||||++||++.++|+|||||++..+|..|++.|..+.....+... ..
T Consensus 83 ~~~~a~Pn~~H~~La~L~~~g~~~~viTQNVDgLh~~AG~~~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~ 162 (289)
T 1q1a_A 83 YPGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGCGKVYPPQVFKSKLAEHPIKD 162 (289)
T ss_dssp CSSSCCCCHHHHHHHHHHHTTCEEEEEECCSSCHHHHTTCCGGGEEETTEEEEEEEETTTCCEECHHHHHHHHTCSSCCS
T ss_pred hhCcCCCCHHHHHHHHHHhCCCccEEEecCccchHHHcCCCcccEEEecCCcCceEECCCCCCCcHHHHHHHHhhccCCC
Confidence 37999999999999999999999999999999999999888999999999999999999988776544444221 24
Q ss_pred CCCCCCCCCCCcccCcEEeCCCCCChhhhhHH-------------HHHhccCCEEEEEccCCCccccCcccHHHhcCCCe
Q 012378 164 SRRCSDLKCGAKLRDTVLDWEDALPPKEMNPA-------------EKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGK 230 (465)
Q Consensus 164 ~P~C~~p~CGg~LrP~VV~FGE~lp~~~~~~A-------------~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~ 230 (465)
+|+| |.|||.|||+||||||++|++.++.+ .+.+.+|||+|||||||+|+|+++||..+. .|++
T Consensus 163 ~P~C--~~Cgg~lrP~vv~FGE~lp~~~~~~~~~~~~~l~~~~~a~~~~~~~DlllviGTSl~V~Pa~~l~~~~~-~~~~ 239 (289)
T 1q1a_A 163 FVKC--DVCGELVKPAIVFFGEDLPDSFSETWLNDSEWLREKITTSGKHPQQPLVIVVGTSLAVYPFASLPEEIP-RKVK 239 (289)
T ss_dssp CCBC--TTTCCBEEEEECCBTSBCCHHHHHHHHHHHHHHHHHHHC----CCCCEEEEESCCCCEETTTHHHHHSC-TTSE
T ss_pred CccC--CCCCCEECCCEEEcCCCCCHHHHHHHHHhhhhhhhhhhHHHHhccCCEEEEEccCCChhhHHHHHHHHh-cCCC
Confidence 7999 79999999999999999998765443 244789999999999999999999987665 5899
Q ss_pred EEEECCCCCC----CCCcccEEEECcHHHHHHHHHHHhccC
Q 012378 231 IVIVNLQKTP----KDKKASLVIHGFVDKVVAGVMDLLNLR 267 (465)
Q Consensus 231 lViINl~~t~----~d~~adl~I~g~~devL~~L~~~L~l~ 267 (465)
+|+||+++++ .+..++++|+|+++++|+.|++.|||+
T Consensus 240 ~v~IN~~~~~~~~~~~~~~d~~i~~~~~~~l~~l~~~l~~~ 280 (289)
T 1q1a_A 240 RVLCNLETVGDFKANKRPTDLIVHQYSDEFAEQLVEELGWQ 280 (289)
T ss_dssp EEEESSSCCTHHHHSCCTTCEEECCCHHHHHHHHHHHHTCH
T ss_pred EEEEECCCcccCCCCCcceeEEEeCCHHHHHHHHHHHcCCH
Confidence 9999999996 245799999999999999999999874
No 11
>2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin, acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ; 1.85A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.9e-59 Score=476.57 Aligned_cols=237 Identities=24% Similarity=0.376 Sum_probs=203.2
Q ss_pred HHHHHHHHHHhCCcEEEEecCCccccCCCCCccCCCccccccc-CCCCC-------------ccccccc------ccCCC
Q 012378 33 KIEQLAKLIQKSKHLVVFTGAGISTSCGIPDFRGPNGIWTLQR-EGKPL-------------PEASLPF------HRAMP 92 (465)
Q Consensus 33 ki~~la~lIk~Ak~IVVlTGAGIStaSGIPDFRg~~GlW~~~~-~~~~~-------------p~~~~~f------~~a~P 92 (465)
+++.++++|++|++|||+|||||||+||||||||++|+|+... .+... |+..|.| ..++|
T Consensus 35 ~i~~l~~~l~~a~~IvvlTGAGISt~SGIPdFR~~~Glw~~~~~~~l~~p~~~~~~~~F~~~P~~f~~~~~~~~~~~~~P 114 (354)
T 2hjh_A 35 TIDHFIQKLHTARKILVLTGAGVSTSLGIPDFRSSEGFYSKIKHLGLDDPQDVFNYNIFMHDPSVFYNIANMVLPPEKIY 114 (354)
T ss_dssp SHHHHHHHHHHCSSEEEEECGGGGGGGTCCCSSSTTSHHHHTGGGCCSSGGGGGBHHHHHHCTHHHHHHGGGGCCCCSCC
T ss_pred HHHHHHHHHHhCCcEEEEECchhhHhhCCCcccCcchHHHHHHhhcCCCHHHhCCHHHHhcCHHHHHHHHHHHccccCCC
Confidence 5789999999999999999999999999999999999998532 22222 2222222 25789
Q ss_pred CHHHHHHHHHHHcCCceEEEeecccchhhhcCCCCCceEEcCCCCccccCCCCCCcccchhhhhhhccccCCCCCC----
Q 012378 93 GMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFRDFEVETIGLKETSRRCS---- 168 (465)
Q Consensus 93 n~~H~aLa~Le~~G~l~~VITQNIDgLH~rAG~p~~kViELHGnl~~~~C~~C~~~y~rd~~~~~i~~~~~~P~C~---- 168 (465)
|++|++|++|++.|++.+||||||||||++||++.++|+|||||++..+|..|+..|.++...+.+. ...+|.|+
T Consensus 115 n~~H~aLa~Le~~g~l~~viTQNVDgLh~rAG~~~~~vielHGsl~~~~C~~C~~~~~~~~~~~~~~-~~~~P~Cp~C~~ 193 (354)
T 2hjh_A 115 SPLHSFIKMLQMKGKLLRNYTQNIDNLESYAGISTDKLVQCHGSFATATCVTCHWNLPGERIFNKIR-NLELPLCPYCYK 193 (354)
T ss_dssp CHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCTTTEEETTEEEEEEEETTTCCEEEGGGGHHHHH-TTCCCBCTTTHH
T ss_pred CHHHHHHHHHHHcCCceEEEecccCcHHHHcCCCccCEEEecCCcCccccCCCCCcCCHHHHHHHhh-ccCCCcCccccc
Confidence 9999999999999999999999999999999998899999999999999999999887765444332 22356662
Q ss_pred -----------------------------CCCCCCcccCcEEeCCCCCChhhhhHHHHHhccCCEEEEEccCCCccccCc
Q 012378 169 -----------------------------DLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACN 219 (465)
Q Consensus 169 -----------------------------~p~CGg~LrP~VV~FGE~lp~~~~~~A~~~~~~aDLlLvlGTSL~V~Pa~~ 219 (465)
++.|+|.|||+||||||++|+..++.+.+++++|||+|||||||+|+|+++
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~lrPdVV~FGE~lp~~~~~~a~~~~~~aDllLviGTSL~V~Paa~ 273 (354)
T 2hjh_A 194 KRREYFPEGYNNKVGVAASQGSMSERPPYILNSYGVLKPDITFFGEALPNKFHKSIREDILECDLLICIGTSLKVAPVSE 273 (354)
T ss_dssp HHHHHCCC-----------------CCTTSCTTTTBEEEEECCBTSBCCHHHHHHHHHHTTTCCEEEEESCCCCEETGGG
T ss_pred cccccccccccccccccccccccccccccccccCCeeCCChhhccccCCHHHHHHHHHHHhhCCEEEEECcCCCchhHHH
Confidence 024569999999999999999999999999999999999999999999999
Q ss_pred ccHHHhcCCCeEEEECCCCCCCCCcccEEEECcHHHHHHHHHHHhccCCCCcc
Q 012378 220 LPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVVAGVMDLLNLRIPPYI 272 (465)
Q Consensus 220 Lp~~a~~~Ga~lViINl~~t~~d~~adl~I~g~~devL~~L~~~L~l~iP~~~ 272 (465)
||..+ ..++++|+||++++..+ .+++.|+|+|+++|+.|++.|||+||++.
T Consensus 274 lv~~~-~~~~~~v~IN~~~t~~~-~~dl~i~g~~~~vl~~L~~~lgw~~p~~~ 324 (354)
T 2hjh_A 274 IVNMV-PSHVPQVLINRDPVKHA-EFDLSLLGYCDDIAAMVAQKCGWTIPHKK 324 (354)
T ss_dssp HHHHS-CTTSCEEEEESSCCTTS-CCSEEEESCHHHHHHHHHHHHTCCCCSTT
T ss_pred HHHHH-hcCCcEEEEcCCCCCCC-CcCEEEeCCHHHHHHHHHHHcCCCCchHH
Confidence 98755 45889999999999864 59999999999999999999999999865
No 12
>4iao_A NAD-dependent histone deacetylase SIR2; protein complex, deacetylase, nucleus, hydrolase-trans complex; HET: APR; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-58 Score=485.28 Aligned_cols=236 Identities=25% Similarity=0.383 Sum_probs=200.6
Q ss_pred HHHHHHHHHHhCCcEEEEecCCccccCCCCCccCCCccccccc-CCCCCcc-------------ccccc------ccCCC
Q 012378 33 KIEQLAKLIQKSKHLVVFTGAGISTSCGIPDFRGPNGIWTLQR-EGKPLPE-------------ASLPF------HRAMP 92 (465)
Q Consensus 33 ki~~la~lIk~Ak~IVVlTGAGIStaSGIPDFRg~~GlW~~~~-~~~~~p~-------------~~~~f------~~a~P 92 (465)
++++++++|++|++|||+|||||||+||||||||++|+|+... .+...|+ ..|.| ..++|
T Consensus 173 ~i~~l~~~L~~ak~IVVLTGAGISTeSGIPDFRs~~GLw~~~~~~gl~~Pe~v~s~~~F~~dP~~Fy~~~r~~~~~~~~P 252 (492)
T 4iao_A 173 TIDHFIQKLHTARKILVLTGAGVSTSLGIPDFRSSEGFYSKIKHLGLDDPQDVFNYNIFMHDPSVFYNIANMVLPPEKIY 252 (492)
T ss_dssp SHHHHHHHHHHCSCEEEEECGGGGGGGTCCCSSSTTSHHHHHHTSCCSCGGGGGBHHHHHHCHHHHHHHGGGGCCCSSCC
T ss_pred HHHHHHHHHHhCCcEEEEeCcccccccCCccccCchHHHHhhhhcCCCCHHHhcCHHHHhhChHHHHHHHHHhhCCcCCC
Confidence 4788999999999999999999999999999999999998642 2332232 22211 25789
Q ss_pred CHHHHHHHHHHHcCCceEEEeecccchhhhcCCCCCceEEcCCCCccccCCCCCCcccchhhhhhhccccCCCCCC----
Q 012378 93 GMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFRDFEVETIGLKETSRRCS---- 168 (465)
Q Consensus 93 n~~H~aLa~Le~~G~l~~VITQNIDgLH~rAG~p~~kViELHGnl~~~~C~~C~~~y~rd~~~~~i~~~~~~P~C~---- 168 (465)
|++|++|++|++.|++.+||||||||||++||++.++|+|||||++..+|..|++.|.++...+.+. ...+|+|+
T Consensus 253 n~aH~aLa~Le~~G~l~~VITQNIDgLHqrAG~~s~~ViELHGsl~~~~C~~Cg~~~~~e~i~~~i~-~~~~P~Cp~Cg~ 331 (492)
T 4iao_A 253 SPLHSFIKMLQMKGKLLRNYTQNIDNLESYAGISTDKLVQCHGSFATATCVTCHWNLPGERIFNKIR-NLELPLCPYCYK 331 (492)
T ss_dssp CHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCTTTEEETTCCTTEEEETTTCCEEEGGGGHHHHH-TTCCCBCTTTHH
T ss_pred CHHHHHHHHHHHCCCCceeEeccccchHhhcCCChhhEEeecCccceeecCCCCCcCCHHHHHHHHh-ccCCCCCccccc
Confidence 9999999999999999999999999999999999899999999999999999999887654333221 11234441
Q ss_pred -----------------------------CCCCCCcccCcEEeCCCCCChhhhhHHHHHhccCCEEEEEccCCCccccCc
Q 012378 169 -----------------------------DLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACN 219 (465)
Q Consensus 169 -----------------------------~p~CGg~LrP~VV~FGE~lp~~~~~~A~~~~~~aDLlLvlGTSL~V~Pa~~ 219 (465)
++.|||.|||+||||||++|++.++.+.+++++|||+|||||||+|+|+++
T Consensus 332 ~~~~~~~~~~~~~dg~~~~~~~~~~~~~~c~~cgG~LRPdIVfFGE~LP~~~~~~a~~~~~~aDLlLVIGTSL~VyPaA~ 411 (492)
T 4iao_A 332 KRREYFPEGYNNKVGVAASQGSMSERPPYILNSYGVLKPDITFFGEALPNKFHKSIREDILECDLLICIGTSLKVAPVSE 411 (492)
T ss_dssp HHHHHSTTCCCCC--------CCTTCCTTCCTTTTBEEESSCCBTSBCCHHHHHHHHHHTTTCSEEEEESCCCCEETGGG
T ss_pred ccccccccccccccccccccccccccccccccCCCcCCCCEEECCCCCCHHHHHHHHHHHhhCCEEEEeccCCCccchhh
Confidence 034669999999999999999999999999999999999999999999999
Q ss_pred ccHHHhcCCCeEEEECCCCCCCCCcccEEEECcHHHHHHHHHHHhccCCCCc
Q 012378 220 LPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVVAGVMDLLNLRIPPY 271 (465)
Q Consensus 220 Lp~~a~~~Ga~lViINl~~t~~d~~adl~I~g~~devL~~L~~~L~l~iP~~ 271 (465)
||..+ ..++++|+||+++++. ..+|+.|.|+||++++.|+++|||+||+-
T Consensus 412 Lv~~a-~~~~p~ViIN~ept~~-~~~Dl~l~G~cdevv~~L~~~LGw~ip~~ 461 (492)
T 4iao_A 412 IVNMV-PSHVPQVLINRDPVKH-AEFDLSLLGYCDDIAAMVAQKCGWTIPHK 461 (492)
T ss_dssp HHHHS-BTTSCEEEEESSCCTT-SCCSEEEESCHHHHHHHHHHHTTCCCCST
T ss_pred HHHHH-hcCCcEEEEcCCCCCC-CCccEEEeCCHHHHHHHHHHHhCCCCChH
Confidence 98755 5678999999999985 46899999999999999999999999954
No 13
>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation, transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5
Probab=100.00 E-value=6.7e-58 Score=463.56 Aligned_cols=231 Identities=28% Similarity=0.488 Sum_probs=200.8
Q ss_pred HHHHHHHHHHh--CCcEEEEecCCccccCCCCCccCC-CcccccccC-CCCCcc-------------ccccc------cc
Q 012378 33 KIEQLAKLIQK--SKHLVVFTGAGISTSCGIPDFRGP-NGIWTLQRE-GKPLPE-------------ASLPF------HR 89 (465)
Q Consensus 33 ki~~la~lIk~--Ak~IVVlTGAGIStaSGIPDFRg~-~GlW~~~~~-~~~~p~-------------~~~~f------~~ 89 (465)
+++.++++|++ |++|||+|||||||+||||||||+ +|+|+..+. +.+.|+ ..|.| ..
T Consensus 30 ~l~~l~~~i~~~~a~~ivvltGAGiSt~SGIPdfR~~~~Glw~~~~~~~l~~p~~~~~~~~f~~~p~~f~~~~r~~~~~~ 109 (323)
T 1j8f_A 30 TLEGVARYMQSERCRRVICLVGAGISTSAGIPDFRSPSTGLYDNLEKYHLPYPEAIFEISYFKKHPEPFFALAKELYPGQ 109 (323)
T ss_dssp SHHHHHHHHHSTTCCCEEEEECGGGTGGGTCCCTTCSCSTTSTTTTTTCCSSGGGGGBHHHHHHCCHHHHHHHHHHSSSS
T ss_pred HHHHHHHHHHhcCCCcEEEEecchhhHhhCCCcccCCCccHHHHhhhcCCCCHHHHcCHHHHhcCHHHHHHHHHHHhhCc
Confidence 48899999996 999999999999999999999999 599986432 222232 22222 37
Q ss_pred CCCCHHHHHHHHHHHcCCceEEEeecccchhhhcCCCCCceEEcCCCCccccCCC--CCCcccchhhhhhhccccCCCCC
Q 012378 90 AMPGMTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPS--CGSEYFRDFEVETIGLKETSRRC 167 (465)
Q Consensus 90 a~Pn~~H~aLa~Le~~G~l~~VITQNIDgLH~rAG~p~~kViELHGnl~~~~C~~--C~~~y~rd~~~~~i~~~~~~P~C 167 (465)
++||++|++|++|++.|++++||||||||||++||++.++|+||||+++..+|.. |++.|.+++..+.+. ...+|+|
T Consensus 110 a~Pn~~H~aLa~L~~~g~~~~viTQNIDgLh~~AG~~~~~VielHGs~~~~~C~~~~C~~~~~~~~~~~~i~-~~~~P~C 188 (323)
T 1j8f_A 110 FKPTICHYFMRLLKDKGLLLRCYTQNIDTLERIAGLEQEDLVEAHGTFYTSHCVSASCRHEYPLSWMKEKIF-SEVTPKC 188 (323)
T ss_dssp CCCCHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCGGGEEETTEEEEEEEESCTTTCCEECHHHHHHHHH-TTCCCBC
T ss_pred CCCCHHHHHHHHHHhcCCCcEEEeecccchHHHcCCCcccEEEeeCCcceeecCCCccCccccHHHHHHhhc-cCCCCCC
Confidence 8999999999999999999999999999999999999899999999999999999 999987765444332 3457999
Q ss_pred CCCCCCCcccCcEEeCCCCCChhhhhHHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCCC----
Q 012378 168 SDLKCGAKLRDTVLDWEDALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK---- 243 (465)
Q Consensus 168 ~~p~CGg~LrP~VV~FGE~lp~~~~~~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~---- 243 (465)
|.|||.|||+||||||++|++.++.+.+++++|||+|||||||+|+|+++|+..+.+. +++|+||+++++.+.
T Consensus 189 --~~Cgg~lrP~VV~FGE~lp~~~~~~a~~~~~~aDlllviGTSl~V~P~a~l~~~~~~~-~~~v~IN~~~t~~~~~~~~ 265 (323)
T 1j8f_A 189 --EDCQSLVKPDIVFFGESLPARFFSCMQSDFLKVDLLLVMGTSLQVQPFASLISKAPLS-TPRLLINKEKAGQSDPFLG 265 (323)
T ss_dssp --TTTCCBEEEEECCBTSCCCHHHHHHHHHGGGSCSEEEEESSCSCSHHHHHHHTTSCTT-CCEEEEESSCCCCCCHHHH
T ss_pred --cCCCCccCCCEEecCCcCCHHHHHHHHHHHhCCCEEEEEeeCcccHHHHHHHHHHHcC-CcEEEEeCCCCCCCccccc
Confidence 7999999999999999999999999999999999999999999999999998766554 466799999998754
Q ss_pred ----------------cccEEEECcHHHHHHHHHHHhccC
Q 012378 244 ----------------KASLVIHGFVDKVVAGVMDLLNLR 267 (465)
Q Consensus 244 ----------------~adl~I~g~~devL~~L~~~L~l~ 267 (465)
.+|+.|.|+|+++|+.|++.|||+
T Consensus 266 ~~~~~~~~~~~~~~~~~~d~~i~gd~~~~l~~L~~~lgw~ 305 (323)
T 1j8f_A 266 MIMGLGGGMDFDSKKAYRDVAWLGECDQGCLALAELLGWK 305 (323)
T ss_dssp HHHHHHTCCCSSSTTCCSEEEEESCHHHHHHHHHHHTTCH
T ss_pred ccccccccccccccccceeEEEeCCHHHHHHHHHHHcCCc
Confidence 379999999999999999999975
No 14
>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue, hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP: c.31.1.5
Probab=100.00 E-value=3.5e-58 Score=446.57 Aligned_cols=211 Identities=27% Similarity=0.434 Sum_probs=177.2
Q ss_pred CCcEEEEecCCccccCCCCCccCCCcccccccCC--------CCCccccccc----------ccCCCCHHHHHHHHHHH-
Q 012378 44 SKHLVVFTGAGISTSCGIPDFRGPNGIWTLQREG--------KPLPEASLPF----------HRAMPGMTHMALVELEK- 104 (465)
Q Consensus 44 Ak~IVVlTGAGIStaSGIPDFRg~~GlW~~~~~~--------~~~p~~~~~f----------~~a~Pn~~H~aLa~Le~- 104 (465)
|++|||+|||||||+||||||||++|+|+.+... ...|+..|.| ..++||.+|++|++|++
T Consensus 1 a~~ivvltGAGiS~~SGIPdfR~~~Glw~~~~~~~~~~~~~f~~~p~~~~~f~~~~~~~~~~~~a~Pn~~H~~La~L~~~ 80 (235)
T 1s5p_A 1 KPRVLVLTGAGISAESGIRTFRAADGLWEEHRVEDVATPEGFDRDPELVQAFYNARRRQLQQPEIQPNAAHLALAKLQDA 80 (235)
T ss_dssp CCCEEEEECTHHHHTTTCCCCCSSSCEETTEEHHHHSSHHHHHHCHHHHHHHHHHHHHHHTSTTCCCCHHHHHHHHHHHH
T ss_pred CCcEEEEechhhhhhhCCCCCCCCCCCccCCCHhHcccHHHHhhCHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHh
Confidence 6899999999999999999999999999865321 1234444443 24999999999999999
Q ss_pred cCCceEEEeecccchhhhcCCCCCceEEcCCCCccccCCCCCCcccchhhhhhhccccCCCCCCCCCCCCcccCcEEeCC
Q 012378 105 AGILKFVISQNVDGLHLRSGIPREKLAELHGNSFMEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLRDTVLDWE 184 (465)
Q Consensus 105 ~G~l~~VITQNIDgLH~rAG~p~~kViELHGnl~~~~C~~C~~~y~rd~~~~~i~~~~~~P~C~~p~CGg~LrP~VV~FG 184 (465)
.|++.+||||||||||++||. ++|+|||||++..+|..|++.|..+..+. ....|.| +.|||.|||+|||||
T Consensus 81 ~g~~~~viTQNvD~Lh~~AG~--~~v~elHG~~~~~~C~~C~~~~~~~~~~~----~~~~p~c--~~Cgg~lrP~vv~FG 152 (235)
T 1s5p_A 81 LGDRFLLVTQNIDNLHERAGN--TNVIHMHGELLKVRCSQSGQVLDWTGDVT----PEDKCHC--CQFPAPLRPHVVWFG 152 (235)
T ss_dssp HGGGEEEEESCCSSHHHHHTC--CSCEETTEEEEEEEETTTCCEEECCSCCC----SSCCC---------CEEEEECCTT
T ss_pred hCCceEEEeccccchhhhcCC--CcEEEecCCceEEEeCCCCCcccchhhcc----CCCCCCC--CCCCCeecCcEEEeC
Confidence 699999999999999999995 79999999999999999999876654221 2235566 789999999999999
Q ss_pred CCCChhhhhHHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCCCcccEEEECcHHHHHHHHHHHh
Q 012378 185 DALPPKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVVAGVMDLL 264 (465)
Q Consensus 185 E~lp~~~~~~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~~adl~I~g~~devL~~L~~~L 264 (465)
|+ | +.++++.+++++|||+|||||||+|+|+++||..+.+.|+++|+||+++++.|..+++.|+++++++|++|++.|
T Consensus 153 E~-p-~~~~~a~~~~~~adl~lviGTSl~V~Pa~~l~~~a~~~g~~~i~iN~~~t~~~~~~~~~i~~~~~~~l~~l~~~l 230 (235)
T 1s5p_A 153 EM-P-LGMDEIYMALSMADIFIAIGTSGHVYPAAGFVHEAKLHGAHTVELNLEPSQVGNEFAEKYYGPASQVVPEFVEKL 230 (235)
T ss_dssp SC-C-SSHHHHHHHHHHCSEEEEESCCTTEETGGGHHHHHHHTTCEEEEEESSSCC---CCSEEEESCHHHHHHHHHHHH
T ss_pred CC-H-HHHHHHHHHHhcCCEEEEECcCCchhhHHHHHHHHHHcCCeEEEEECCCCCCCccccEEEeCCHHHHHHHHHHHH
Confidence 99 7 468999999999999999999999999999999998899999999999999999999999999999999999876
No 15
>3qrl_A Transcription initiation factor TFIID subunit 14; yeats domain, IG fold, nucleus, nuclear protein; HET: PGE; 1.70A {Saccharomyces cerevisiae} PDB: 2l7e_A
Probab=96.31 E-value=0.012 Score=52.64 Aligned_cols=113 Identities=12% Similarity=0.242 Sum_probs=77.5
Q ss_pred CceeEEEeeeccCCc------cceeeE--EEEeeecCCCCCcccceEeEeecccccccccccccCCCeEEEEecccccce
Q 012378 275 DLLQIIVTQSLSSDK------KFVNWT--LRITSVHGQTAQLPFIKSVEVSFSDRQKYKEASLDKQPFQLKRRTVINETF 346 (465)
Q Consensus 275 ~~~~i~~~~~~~~~~------~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 346 (465)
+.+.|...|....+. ..+.|+ |.+.+.+|..-+..|+++|....-.--.-.-+++.++||.+..+.= |+|
T Consensus 10 rtvr~~T~Q~~~~~~~~~eg~~~h~WtieV~vr~~~g~ei~~~~i~kV~f~LH~sF~np~r~v~~pPF~v~e~GW--GeF 87 (140)
T 3qrl_A 10 RTIRIKTQQHILPEVPPVENFPVRQWSIEIVLLDDEGKEIPATIFDKVIYHLHPTFANPNRTFTDPPFRIEEQGW--GGF 87 (140)
T ss_dssp EEEEEEEEEEECTTSCCBTTBCCEEEEEEEEEECTTSCEECCTTEEEEEEECCTTSSSCEEEECSTTCCEEEEES--SCC
T ss_pred EEEEEEEeeeeCCCCCCCCCCcccEeeEEEEEeCCCCCcCchheEEEEEEEeCCCCCCCeEEEcCCCcEEEEEEe--eeE
Confidence 445555556543322 236899 7788888876666799999986222111134788999999986554 899
Q ss_pred EEEEEEeecCCCCCCccccccccccccCC------CccccChHHHHHHHHH
Q 012378 347 DIKLKLNFSDGCGCPCTQINIPFDFKVPP------KCFELDKDDIFQRLRE 391 (465)
Q Consensus 347 ~~~~~l~f~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 391 (465)
+|.|++.|.+..+ ...|.|...|+... -.|+.-++...++|++
T Consensus 88 ~i~I~i~f~~~~~--~~~i~H~L~f~~~~y~~~h~i~f~np~~~l~~~L~~ 136 (140)
T 3qrl_A 88 PLDISVFLLEKAG--ERKIPHDLNFLQESYEVEHVIQIPLNKPLLTEELAK 136 (140)
T ss_dssp CEEEEEEEGGGTE--EEEEEECCCSSSSEEEEEEEEEEESCSHHHHHHHTT
T ss_pred EEEEEEEEecCCC--cEEEEEEEEeCCCCCcceEEEEECCCCHHHHHHHHH
Confidence 9999999998654 47899999988653 2345567766666654
No 16
>3rls_A YAF9, protein AF-9 homolog; yeats domain, histone, transcription; 1.70A {Saccharomyces cerevisiae} PDB: 3fk3_A
Probab=96.12 E-value=0.017 Score=53.42 Aligned_cols=84 Identities=19% Similarity=0.296 Sum_probs=64.9
Q ss_pred ccceeeEEEEeeecCCCCCcccceEeEeecccccccccccccCCCeEEEEecccccceEEEEEEeecCCCCCCccccccc
Q 012378 289 KKFVNWTLRITSVHGQTAQLPFIKSVEVSFSDRQKYKEASLDKQPFQLKRRTVINETFDIKLKLNFSDGCGCPCTQINIP 368 (465)
Q Consensus 289 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~ 368 (465)
.-.+.|++-|.+.++..-. .|+++|....-..-.-.-++++++||.+..+.- |+|+|.|++.|.+..|+-.+.|.|.
T Consensus 30 ~~TH~WtVyVr~~~~edis-~~v~KV~F~LHpSF~np~Rvv~~PPFevtE~GW--GeF~i~I~i~F~~~~~ek~i~i~H~ 106 (175)
T 3rls_A 30 EHTHLWTIFVRGPQNEDIS-YFIKKVVFKLHDTYPNPVRSIEAPPFELTETGW--GEFDINIKVYFVEEANEKVLNFYHR 106 (175)
T ss_dssp TCCEEEEEEEECGGGCCCT-TTEEEEEEECCTTSSSCEEEECSSSEEEEEEES--SCCEEEEEEEECGGGCCCCEEEEEE
T ss_pred CCcEEEEEEEECCCCCChh-heEEEEEEEcCCCCCCCcEEEeCCCCEEEEeEE--eeEEEEEEEEEeCCCCCccEEEEEE
Confidence 3558899999888775333 699999986433222234788999999986654 7999999999999999999999999
Q ss_pred cccccCC
Q 012378 369 FDFKVPP 375 (465)
Q Consensus 369 ~~~~~~~ 375 (465)
+-++...
T Consensus 107 L~L~~~~ 113 (175)
T 3rls_A 107 LRLHPYA 113 (175)
T ss_dssp CCCCC--
T ss_pred EEecCCC
Confidence 8877543
No 17
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=92.65 E-value=0.27 Score=52.22 Aligned_cols=71 Identities=15% Similarity=0.079 Sum_probs=50.3
Q ss_pred HHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHHhc
Q 012378 195 AEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 265 (465)
Q Consensus 195 A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~--~adl~I~g~~devL~~L~~~L~ 265 (465)
+.+.+++||++|++|+.+.-......+..-...+.++|.|+.++...+. ..++.|.+|+.++|+.|.+.+.
T Consensus 266 ~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~ii~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 338 (568)
T 2c31_A 266 RAFALAQCDVCVLIGARLNWLMQHGKGKTWGDELKKYVQIDIQANEMDSNQPIAAPVVGDIKSAVSLLRKALK 338 (568)
T ss_dssp HHHHHHHCSEEEEESCCCSGGGGGGCSGGGTTSCCEEEEEESCGGGTTSSSCCSEEEESCHHHHHHHHHHHHT
T ss_pred HHhhhccCCEEEEECCCCccccccCcccccCCCCCeEEEEeCCHHHhcCCcCCCceeeCCHHHHHHHHHHhhh
Confidence 3456789999999999885322211111111146789999998876654 4689999999999999987764
No 18
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=91.58 E-value=0.37 Score=51.10 Aligned_cols=69 Identities=16% Similarity=0.204 Sum_probs=49.3
Q ss_pred HHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHHhc
Q 012378 195 AEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 265 (465)
Q Consensus 195 A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~--~adl~I~g~~devL~~L~~~L~ 265 (465)
+.+.+++||++|++|+.+.-....... ....+.++|.|+.++...+. ..++.|.+|+.++|+.|.+.+.
T Consensus 264 ~~~~l~~aDlvl~iG~~~~~~~~~~~~--~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 334 (564)
T 2q28_A 264 RSFALANADVVMLVGARLNWLLAHGKK--GWAADTQFIQLDIEPQEIDSNRPIAVPVVGDIASSMQGMLAELK 334 (564)
T ss_dssp HHHHHHHCSEEEEESCCCSGGGGGGTT--TSCTTCEEEEEESCGGGTTSSSCCSEEEESCHHHHHHHHHHHHH
T ss_pred HHhHhhcCCEEEEECCccccccccccc--ccCCCCeEEEEeCCHHHhcCCCCCCeEEEcCHHHHHHHHHHHhh
Confidence 345678999999999987532111100 11246789999998876654 5689999999999999987663
No 19
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=91.01 E-value=0.45 Score=50.83 Aligned_cols=70 Identities=19% Similarity=0.291 Sum_probs=51.3
Q ss_pred HHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHHhc
Q 012378 194 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 265 (465)
Q Consensus 194 ~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~--~adl~I~g~~devL~~L~~~L~ 265 (465)
.+.+.+.+||++|.+|+.+.-.-...+. ....+.++|.|+.++...+. ..++.|.+|+.++|+.|.+.+.
T Consensus 271 ~~~~~l~~aDlvl~iG~~~~~~~~~~~~--~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 342 (590)
T 1ybh_A 271 YANYAVEHSDLLLAFGVRFDDRVTGKLE--AFASRAKIVHIDIDSAEIGKNKTPHVSVCGDVKLALQGMNKVLE 342 (590)
T ss_dssp HHHHHHHHCSEEEEESCCCCHHHHSSGG--GTTTTSEEEEEESCTTTTTSSSCCSEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEEEcCCCCccccCccc--ccCCCCeEEEEECCHHHhCCCcCCCeEEecCHHHHHHHHHHhhh
Confidence 4556788999999999987532212221 11246789999999877665 5789999999999999876653
No 20
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=90.57 E-value=0.49 Score=50.46 Aligned_cols=69 Identities=14% Similarity=0.022 Sum_probs=50.7
Q ss_pred HHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHHhc
Q 012378 195 AEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 265 (465)
Q Consensus 195 A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~--~adl~I~g~~devL~~L~~~L~ 265 (465)
+...+.+|||+|.+|+.+.-.+...+ .....++++|.|+.++...+. ..++.|.||+.++|+.|.+.+.
T Consensus 283 ~~~~~~~aDlvl~~G~~~~~~~~~~~--~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 353 (578)
T 3lq1_A 283 EIIDKLTPEVVIRFGSMPVSKPLKNW--LEQLSDIRFYVVDPGAAWKDPIKAVTDMIHCDERFLLDIMQQNMP 353 (578)
T ss_dssp HHHHHTCCSEEEEESSCCSCHHHHHH--HHHCCSSEEEEECTTCCCCCTTCCCSEEECSCHHHHHHHHHHHSC
T ss_pred cccccCCCCEEEEeCCcccchhHHHH--HhcCCCCEEEEECCCCCcCCCCcCceEEEEeCHHHHHHHHHhhcc
Confidence 33457899999999997653332222 112357899999999876664 5789999999999999887654
No 21
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=90.37 E-value=0.46 Score=50.84 Aligned_cols=69 Identities=19% Similarity=0.150 Sum_probs=51.7
Q ss_pred HHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHHhc
Q 012378 194 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 265 (465)
Q Consensus 194 ~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~--~adl~I~g~~devL~~L~~~L~ 265 (465)
.+.+.+.+||++|++|+.+.-.... + .....+.++|.|+.++...+. ..++.|.+|+.++|+.|.+.+.
T Consensus 264 ~~~~~l~~aDlvl~iG~~~~~~~~~-~--~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 334 (589)
T 2pgn_A 264 SANDMMAAADFVLVLGSRLSDWGIA-Q--GYITKMPKFVHVDTDPAVLGTFYFPLLSVVADAKTFMEQLIEVLP 334 (589)
T ss_dssp HHHHHHHHCSEEEEESCCCCTTTTT-T--TTTCCCCSEEEEESCGGGTTSSSCCSEEEECCHHHHHHHHHHHGG
T ss_pred HHHHHHhhCCEEEEECCCccccccc-c--cccCCCCeEEEEeCCHHHHCCCcCCCEEEEeCHHHHHHHHHHHhh
Confidence 3556778899999999987533322 2 111246789999999876665 5689999999999999988775
No 22
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=90.00 E-value=0.48 Score=50.45 Aligned_cols=69 Identities=13% Similarity=0.024 Sum_probs=51.5
Q ss_pred HHHHHhccCCEEEEEccC-CCccccCcccHHHhcCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHHhc
Q 012378 194 PAEKHCKIADVVLCLGTS-LQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 265 (465)
Q Consensus 194 ~A~~~~~~aDLlLvlGTS-L~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~--~adl~I~g~~devL~~L~~~L~ 265 (465)
.+.+.++++|++|.+|+. +.-.....+. ...+.++|.|+.++...+. ..++.|.+|+.++|+.|.+.+.
T Consensus 280 ~~~~~l~~aDlvl~iG~~~~~~~~~~~~~---~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 351 (573)
T 2iht_A 280 ALQTMFAPVDLVLTVGYDYAEDLRPSMWQ---KGIEKKTVRISPTVNPIPRVYRPDVDVVTDVLAFVEHFETATA 351 (573)
T ss_dssp HHHHHHTTCCEEEEETCCGGGCCCHHHHC---CSSCCEEEEEESSCCSCTTTCCCSEEEESCHHHHHHHHHHHTT
T ss_pred HHHHHHhhCCEEEEECCCccccccccccC---CCCCCeEEEEeCCHHHhCCCcCCCeeEeCCHHHHHHHHHHhcc
Confidence 345678899999999997 6432221221 1146799999999887665 4689999999999999988775
No 23
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=89.57 E-value=0.59 Score=49.71 Aligned_cols=68 Identities=13% Similarity=0.300 Sum_probs=50.1
Q ss_pred HHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHHhc
Q 012378 194 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 265 (465)
Q Consensus 194 ~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~--~adl~I~g~~devL~~L~~~L~ 265 (465)
.+.+.+++||++|.+|+.........+ . ..+.++|.|+.++...+. ..++.|.||+.++|+.|...+.
T Consensus 267 ~~~~~l~~aDlvl~lG~~~~~~~~~~~---~-~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 336 (566)
T 1ozh_A 267 AGDRLLQLADLVICIGYSPVEYEPAMW---N-SGNATLVHIDVLPAYEERNYTPDVELVGDIAGTLNKLAQNID 336 (566)
T ss_dssp HHHHHHHHCSEEEEESCCGGGSCGGGT---C-CSCSEEEEEESSCCCCBTTBCCSEEEESCHHHHHHHHHHTCC
T ss_pred HHHHHHHhCCEEEEECCCCCcCCcccc---C-CCCCcEEEEeCCHHHhCCCCCCCEEEEeCHHHHHHHHHHhcc
Confidence 345667889999999995332222222 1 236799999999877665 4789999999999999987664
No 24
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=89.54 E-value=0.63 Score=49.94 Aligned_cols=68 Identities=19% Similarity=0.347 Sum_probs=51.6
Q ss_pred HHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHHhc
Q 012378 194 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 265 (465)
Q Consensus 194 ~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~--~adl~I~g~~devL~~L~~~L~ 265 (465)
.+.+.+.+|||+|++|+.+...... .....++++|.|+.++...+. ..++.|.+|+..+|+.|.+.+.
T Consensus 269 ~~~~~l~~aDlvl~iG~~~~~~~~~----~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 338 (603)
T 4feg_A 269 PANEALAQADVVLFVGNNYPFAEVS----KAFKNTRYFLQIDIDPAKLGKRHKTDIAVLADAQKTLAAILAQVS 338 (603)
T ss_dssp HHHHHHHHCSEEEEESCCCTTTTTT----TTTTTCSEEEEEESCGGGTTSSSCCSEEEESCHHHHHHHHHHTCC
T ss_pred HHHHHHHhCCEEEEECCCCCccccc----ccCCCCCeEEEEeCCHHHhCCccCCCEEEEeCHHHHHHHHHHhhh
Confidence 4556788999999999988643221 112346899999999877664 5789999999999999987664
No 25
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=89.14 E-value=0.6 Score=49.45 Aligned_cols=65 Identities=15% Similarity=0.273 Sum_probs=49.6
Q ss_pred HHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHHhc
Q 012378 194 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 265 (465)
Q Consensus 194 ~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~--~adl~I~g~~devL~~L~~~L~ 265 (465)
.+.+.+.+|||+|++|+.+....+ ...++++|.|+.++...+. ..++.|.+|+.++|+.|.+.+.
T Consensus 258 ~~~~~~~~aDlvl~iG~~~~~~~~-------~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 324 (549)
T 3eya_A 258 SGFHTMMNADTLVLLGTQFPYRAF-------YPTDAKIIQIDINPASIGAHSKVDMALVGDIKSTLRALLPLVE 324 (549)
T ss_dssp HHHHHHHHCSEEEEESCCCCCGGG-------SCSSSEEEEEESCGGGTTSSSCCSEEEECCHHHHHHHHGGGSC
T ss_pred HHHHHHHhCCEEEEECCCCCcccc-------CCCCCeEEEEeCCHHHhCCCCCCCeEEEeCHHHHHHHHHHhcc
Confidence 355678899999999998753221 1246789999998877654 4689999999999998876654
No 26
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=88.83 E-value=0.62 Score=49.42 Aligned_cols=66 Identities=14% Similarity=0.155 Sum_probs=49.9
Q ss_pred hccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHHhc
Q 012378 199 CKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 265 (465)
Q Consensus 199 ~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~--~adl~I~g~~devL~~L~~~L~ 265 (465)
++++|++|.+|+.+.-.....+-.. ...+.++|.|+.++...+. ..++.|.+|+.++|+.|.+.+.
T Consensus 267 ~~~aDlvl~iG~~~~~~~~~~~~~~-~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 334 (563)
T 2uz1_A 267 DAAPDLVLMLGARFGLNTGHGSGQL-IPHSAQVIQVDPDACELGRLQGIALGIVADVGGTIEALAQATA 334 (563)
T ss_dssp TCCCSEEEEESCCSSGGGTTTSCSS-SCTTSEEEEECSCGGGTTSSSCCSEEECSCHHHHHHHHHHHHT
T ss_pred hcCCCEEEEECCCCccccccccccc-CCCCCeEEEEECCHHHhCCCCCCCeEEEcCHHHHHHHHHHhhh
Confidence 7899999999998765543322111 1126799999999877665 5789999999999999988764
No 27
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=88.54 E-value=0.63 Score=49.39 Aligned_cols=65 Identities=15% Similarity=0.032 Sum_probs=47.5
Q ss_pred HHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHH
Q 012378 194 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGV 260 (465)
Q Consensus 194 ~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~--~adl~I~g~~devL~~L 260 (465)
.+.+.+++|||+|++|+.+.-.+...+. ......++|.|+.++...+. ..++.|.+|+.++++.|
T Consensus 271 ~~~~~~~~aDlvl~iG~~~~~~~~~~~~--~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~l 337 (556)
T 3hww_A 271 KATSELQQAQIVVQLGSSLTGKRLLQWQ--ASCEPEEYWIVDDIEGRLDPAHHRGRRLIANIADWLELH 337 (556)
T ss_dssp HHHHHHTTCSEEEEESBCCCCHHHHHHH--HHCCCSEEEEEESSCSCCCTTCCSEEEEESCHHHHHHHS
T ss_pred hhhhcccCCCEEEEcCCCcccHHHHHHH--hcCCCCeEEEECCCCccCCCCCCceEEEEcCHHHHHHhc
Confidence 4566788999999999998543333331 12233489999998877665 56899999999998764
No 28
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=86.91 E-value=0.7 Score=49.61 Aligned_cols=69 Identities=14% Similarity=0.185 Sum_probs=50.1
Q ss_pred HHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHHh
Q 012378 194 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLL 264 (465)
Q Consensus 194 ~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~--~adl~I~g~~devL~~L~~~L 264 (465)
.+.+.+.+||++|++|+.+.-.....+ .....+.++|.|+.++...+. ..++.|.||+..+++.|.+.+
T Consensus 286 ~~~~~l~~aDlvl~iG~~~~~~~~~~~--~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l 356 (616)
T 2pan_A 286 YGNATLLASDMVFGIGNRFANRHTGSV--EKYTEGRKIVHIDIEPTQIGRVLCPDLGIVSDAKAALTLLVEVA 356 (616)
T ss_dssp HHHHHHHHCSEEEEESCCCCHHHHSSH--HHHHTTCEEEEEESCGGGTTSSSCCSSCEECCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEEECCCCcccccCcc--cccCCCCeEEEEeCCHHHhCCCCCCCeEEEcCHHHHHHHHHHHh
Confidence 456678899999999998763221222 112246789999998866554 467889999999999998765
No 29
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=86.47 E-value=1.2 Score=47.68 Aligned_cols=67 Identities=15% Similarity=0.138 Sum_probs=48.4
Q ss_pred HHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHHhc
Q 012378 196 EKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 265 (465)
Q Consensus 196 ~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~--~adl~I~g~~devL~~L~~~L~ 265 (465)
.+.++ +|++|++|+.+.-.....+ .....+.++|.|+.++...+. ..++.|.+|+.++|+.|.+.+.
T Consensus 305 ~~~~~-~Dlvl~iG~~~~~~~~~~~--~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 373 (604)
T 2x7j_A 305 KRKLR-PDVVIRFGPMPVSKPVFLW--LKDDPTIQQIVIDEDGGWRDPTQASAHMIHCNASVFAEEIMAGLT 373 (604)
T ss_dssp HHHHC-CSEEEEESSCCSCHHHHHH--HHHCTTSEEEEECTTCCCCCTTSCCSEEECSCHHHHHHHHHHTSC
T ss_pred hhhcC-CCEEEEECCcCccHHHHHH--HhhCCCCeEEEECCCCCccCCCccceEEEEcCHHHHHHHHHHhhc
Confidence 34455 8999999998753322222 111226789999999887765 4689999999999999988763
No 30
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=85.81 E-value=1.5 Score=46.86 Aligned_cols=67 Identities=16% Similarity=0.285 Sum_probs=50.7
Q ss_pred HHHHHhccCCEEEEEccCCCcccc-CcccHHHhcCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHHhc
Q 012378 194 PAEKHCKIADVVLCLGTSLQITPA-CNLPLKCLRGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 265 (465)
Q Consensus 194 ~A~~~~~~aDLlLvlGTSL~V~Pa-~~Lp~~a~~~Ga~lViINl~~t~~d~--~adl~I~g~~devL~~L~~~L~ 265 (465)
.+.+.+++||++|++|+.+..... ..+ . .+.++|.|+.++...++ ..++.|.||+..+++.|.+.+.
T Consensus 262 ~~~~~l~~aDlvl~iG~~~~~~~~~~~~----~-~~~~~i~id~d~~~~~~~~~~~~~i~gd~~~~l~~L~~~l~ 331 (590)
T 1v5e_A 262 PANETILEADTVLFAGSNFPFSEVEGTF----R-NVDNFIQIDIDPAMLGKRHHADVAILGDAALAIDEILNKVD 331 (590)
T ss_dssp HHHHHHHHCSEEEEESCCCTTTTTTTTT----T-TCSEEEEEESCGGGTTSSSCCSEEEESCHHHHHHHHHHHSC
T ss_pred HHHHHHHhCCEEEEECCCCcchhccccC----C-CCCeEEEEeCCHHHHCCCcCCCeEEEcCHHHHHHHHHHhhc
Confidence 456678899999999998754331 001 0 36789999998876655 4689999999999999988764
No 31
>1o97_D Electron transferring flavoprotein alpha-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 c.31.1.2 PDB: 1o95_D* 1o96_B* 1o94_D* 3clu_D* 3clt_D* 3clr_D* 3cls_D*
Probab=85.56 E-value=0.78 Score=45.92 Aligned_cols=58 Identities=16% Similarity=0.092 Sum_probs=45.9
Q ss_pred CCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCC-CCCCcccEEEECcHHHHHHHHHHHh
Q 012378 202 ADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKT-PKDKKASLVIHGFVDKVVAGVMDLL 264 (465)
Q Consensus 202 aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t-~~d~~adl~I~g~~devL~~L~~~L 264 (465)
|+|.|.+|-|.++.-.+.| +.-..+|-||.++. |.-+.+|+.|-||.-+++|+|.+.|
T Consensus 260 ~~lYiA~GISGAiQHlaGm-----~~s~~IVAIN~D~~ApIF~~ADygiVgDl~~vvP~L~~~l 318 (320)
T 1o97_D 260 CKLYVAMGISGSIQHMAGM-----KHVPTIIAVNTDPGASIFTIAKYGIVADIFDIEEELKAQL 318 (320)
T ss_dssp CSEEEEESCCCCHHHHHHH-----TTCSEEEEECSCTTCGGGGTCSEEECSCHHHHHHHHHHHC
T ss_pred cceEEEEeccCcHHHHhhc-----ccCCEEEEEeCCCCCCcccccCeEEeeeHHHHHHHHHHHH
Confidence 5999999999888654433 33345777999874 4556899999999999999999886
No 32
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=85.25 E-value=0.68 Score=48.66 Aligned_cols=71 Identities=14% Similarity=0.183 Sum_probs=51.5
Q ss_pred HHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCCC-cccEEEECcHHHHHHHHHHHhc
Q 012378 194 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDK-KASLVIHGFVDKVVAGVMDLLN 265 (465)
Q Consensus 194 ~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~-~adl~I~g~~devL~~L~~~L~ 265 (465)
.+.+.+++||++|++|+.+.-.....+.. ....+.++|.|+.++...+. ..++.|.+|+.++|+.|.+.+.
T Consensus 259 ~~~~~l~~aDlvl~iG~~~~~~~~~~~~~-~~~~~~~~i~id~d~~~~~~~~~~~~i~~d~~~~l~~L~~~~~ 330 (528)
T 1q6z_A 259 AISQLLEGHDVVLVIGAPVFRYHQYDPGQ-YLKPGTRLISVTCDPLEAARAPMGDAIVADIGAMASALANLVE 330 (528)
T ss_dssp HHHHHHTTCSEEEEESSCTTCCCSCCCSC-SSCTTCEEEEEESCHHHHHHCSSSEEEESCHHHHHHHHHHHSC
T ss_pred HHHHHHhcCCEEEEECCCCccccccCcCC-cCCCCCeEEEEeCCHHHhCCCCCCeeEeCCHHHHHHHHHHHhh
Confidence 45677899999999999876554433211 01236789999988753221 5689999999999999988774
No 33
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=84.60 E-value=1.5 Score=47.88 Aligned_cols=71 Identities=14% Similarity=0.261 Sum_probs=49.1
Q ss_pred HHHHhccCCEEEEEccCCCccc---cCcccHHHh----cCCCeEEEECCCCCCCCC--cccEEEECcHHHHHHHHHHHhc
Q 012378 195 AEKHCKIADVVLCLGTSLQITP---ACNLPLKCL----RGGGKIVIVNLQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 265 (465)
Q Consensus 195 A~~~~~~aDLlLvlGTSL~V~P---a~~Lp~~a~----~~Ga~lViINl~~t~~d~--~adl~I~g~~devL~~L~~~L~ 265 (465)
+.+.+++|||+|.||+.+.-.- ...+...+. ...+.+|.|+.++...+. ..++.|.||+..+|..|...|.
T Consensus 350 ~~~~l~~aDlvl~iG~r~~~~~t~~~~~~~~~~~~~~~~~~~~iI~idid~~~~~~~~~~~~~i~gD~~~~l~~L~~~l~ 429 (677)
T 1t9b_A 350 ANLAVQNADLIIAVGARFDDRVTGNISKFAPEARRAAAEGRGGIIHFEVSPKNINKVVQTQIAVEGDATTNLGKMMSKIF 429 (677)
T ss_dssp HHHHHHHCSEEEEESCCCCTTTSCSGGGSSHHHHHHHHTTSCEEEEEESCGGGSSSSSCCSEEEESCHHHHHHHHHTTSC
T ss_pred HHHHHhcCCEEEEECCccCcccccCccccCcccccccccCCceEEEEECCHHHhCCcccCCEEEeCCHHHHHHHHHHHhh
Confidence 4456789999999999875321 112222222 233448889988876654 5689999999999999987653
No 34
>1efv_A Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 c.31.1.2 PDB: 2a1u_A* 1t9g_R* 2a1t_R*
Probab=79.99 E-value=2.7 Score=41.87 Aligned_cols=59 Identities=22% Similarity=0.273 Sum_probs=47.4
Q ss_pred CCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCC-CCCCcccEEEECcHHHHHHHHHHHhc
Q 012378 202 ADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKT-PKDKKASLVIHGFVDKVVAGVMDLLN 265 (465)
Q Consensus 202 aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t-~~d~~adl~I~g~~devL~~L~~~L~ 265 (465)
.+|.|.+|-|.++.-.+.+ +.-..+|-||.++. |.-..+|+.|-||.-+++|+|.+.|.
T Consensus 254 P~lYiA~GISGAiQHlaGm-----~~s~~IVAIN~D~~ApIf~~ADygiVgDl~~v~P~L~~~l~ 313 (315)
T 1efv_A 254 PELYIAVGISGAIQHLAGM-----KDSKTIVAINKDPEAPIFQVADYGIVADLFKVVPEMTEILK 313 (315)
T ss_dssp CSEEEEESCCCCHHHHTTT-----TTCSEEEEEESCTTCGGGGTCSEEEESCHHHHHHHHHHHTC
T ss_pred cceEEEecccCcHHHHhhc-----ccCCEEEEEeCCCCCCcchhcCeEEeeeHHHHHHHHHHHHh
Confidence 5799999999998766555 22335777999874 45568999999999999999999874
No 35
>1efp_A ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3 c.31.1.2
Probab=78.20 E-value=2.9 Score=41.55 Aligned_cols=58 Identities=21% Similarity=0.234 Sum_probs=45.9
Q ss_pred CCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCC-CCCCcccEEEECcHHHHHHHHHHHh
Q 012378 202 ADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKT-PKDKKASLVIHGFVDKVVAGVMDLL 264 (465)
Q Consensus 202 aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t-~~d~~adl~I~g~~devL~~L~~~L 264 (465)
.+|.|.+|-|.++.-.+.+ +.-..+|-||.++. |.-+.+|+.|-||.-+++|+|.+.|
T Consensus 249 P~lYiA~GISGAiQHlaGm-----~~s~~IVAIN~D~~ApIF~~ADygiVgDl~~v~P~L~~~l 307 (307)
T 1efp_A 249 PELYVAVGISGAIQHLAGM-----KDSKVIVAINKDEEAPIFQIADYGLVGDLFSVVPELTGKL 307 (307)
T ss_dssp CSEEEEESCCCCHHHHTTT-----TTCSEEEEEESCTTCGGGGTCSEEEESCHHHHHHHHHHTC
T ss_pred CceEEEEeccCcHHHHhhh-----ccCCEEEEEeCCCCCCcccccCeEEeeeHHHHHHHHHhhC
Confidence 5799999999998766555 22335777999874 4556899999999999999998754
No 36
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=74.82 E-value=3.1 Score=43.93 Aligned_cols=67 Identities=12% Similarity=0.081 Sum_probs=45.3
Q ss_pred HHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCCCcccEEEECcHHHHHHHHHHHh
Q 012378 194 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVVAGVMDLL 264 (465)
Q Consensus 194 ~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~~adl~I~g~~devL~~L~~~L 264 (465)
.+.+.+++||++|++|+.+.-.+...+. ....+.++|.||.++...+.. ....-++.++++.|.+.+
T Consensus 271 ~~~~~l~~aDlvl~iG~~~~~~~~~~~~--~~~~~~~~i~id~d~~~~~~~--~~~~~~~~~~l~~L~~~l 337 (563)
T 2vk8_A 271 EVKEAVESADLILSVGALLSDFNTGSFS--YSYKTKNIVEFHSDHMKIRNA--TFPGVQMKFVLQKLLTTI 337 (563)
T ss_dssp HHHHHHHTCSEEEEESCCCCTTTTTTTC--CCCCCSCEEEECSSEEEETTE--EEETCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEEECCCCccccccccc--cCCCCCeEEEEeCCceEECCc--ccCCcCHHHHHHHHHHhh
Confidence 4556788999999999988554443331 112357899999987665542 334446788888887665
No 37
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=72.50 E-value=3.7 Score=43.45 Aligned_cols=67 Identities=7% Similarity=0.152 Sum_probs=45.9
Q ss_pred HHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCCCcccEEEECcHHHHHHHHHHHhc
Q 012378 195 AEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVVAGVMDLLN 265 (465)
Q Consensus 195 A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~~adl~I~g~~devL~~L~~~L~ 265 (465)
+.+.+++||++|++|+.+.-.....+. ....+.++|.|+.++...+. .....-.+.++++.|.+.+.
T Consensus 270 ~~~~l~~aDlvl~iG~~~~~~~~~~~~--~~~~~~~~i~id~d~~~~~~--~~~~~~~~~~~l~~L~~~l~ 336 (566)
T 2vbi_A 270 VQELVETSDALLCIAPVFNDYSTVGWS--AWPKGPNVILAEPDRVTVDG--RAYDGFTLRAFLQALAEKAP 336 (566)
T ss_dssp HHHHHHTCSEEEEESCCCBTTTTTTTT--SCCCSTTEEEECSSEEEETT--EEEESSCHHHHHHHHHHHCC
T ss_pred HHHHHHhCCEEEEECCCcccccccccc--ccCCCCcEEEEeCChheeCC--cccCCccHHHHHHHHHHhcc
Confidence 456688999999999987654443331 12246789999998766553 34445567888888887664
No 38
>1pno_A NAD(P) transhydrogenase subunit beta; nucleotide binding fold, oxidoreductase; HET: NAP; 2.10A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1pnq_A* 1xlt_C* 2oor_C* 1ptj_C* 2oo5_C*
Probab=72.14 E-value=8.6 Score=35.28 Aligned_cols=73 Identities=14% Similarity=0.378 Sum_probs=50.4
Q ss_pred hhHHHHHhccCCEEEEEccCCCccccCc---------ccHHHhcCCCeEEEECCCCCC----CC-----CcccEEEECcH
Q 012378 192 MNPAEKHCKIADVVLCLGTSLQITPACN---------LPLKCLRGGGKIVIVNLQKTP----KD-----KKASLVIHGFV 253 (465)
Q Consensus 192 ~~~A~~~~~~aDLlLvlGTSL~V~Pa~~---------Lp~~a~~~Ga~lViINl~~t~----~d-----~~adl~I~g~~ 253 (465)
++..-..+.++|++||||..-.|-|+++ +|..-...-..+|.+.+.-.+ .+ ...+.-+-||+
T Consensus 89 MdeIN~df~~tDv~lVIGANDvvNpaA~~dp~SpI~GMPvl~v~kAk~ViV~KRsm~~GyAgv~NpLF~~~nt~MlfGDA 168 (180)
T 1pno_A 89 LEEINSSFQTADVAFVIGANDVTNPAAKTDPSSPIYGMPILDVEKAGTVLFIKRSMASGYAGVENELFFRNNTMMLFGDA 168 (180)
T ss_dssp HHHHGGGGGGCSEEEEESCCGGGCGGGTTCTTSTTTTCCCCCGGGSSEEEEEESSSCCCTTCCCCGGGTSTTEEEEESCH
T ss_pred HHHHhhhhhhcCEEEEeccccccCchhccCCCCCcCCCeeechhhCCEEEEEECCCCCCcCCCcCcceecCCceEEeccH
Confidence 5666678899999999999988877654 332222222356666655322 12 24677899999
Q ss_pred HHHHHHHHHHh
Q 012378 254 DKVVAGVMDLL 264 (465)
Q Consensus 254 devL~~L~~~L 264 (465)
.+.+.+|.+.|
T Consensus 169 K~~~~~l~~~l 179 (180)
T 1pno_A 169 KKMTEQIVQAM 179 (180)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998775
No 39
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=71.30 E-value=3.8 Score=43.37 Aligned_cols=67 Identities=13% Similarity=0.116 Sum_probs=45.2
Q ss_pred HHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCCCcccEEEECcHHHHHHHHHHHhc
Q 012378 195 AEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVVAGVMDLLN 265 (465)
Q Consensus 195 A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~~adl~I~g~~devL~~L~~~L~ 265 (465)
+.+.++++|++|++|+.+.-.....+. ....+.++|.|+.++...+. ......++.++|+.|.+.+.
T Consensus 270 ~~~~l~~aDlvl~iG~~~~~~~~~~~~--~~~~~~~~i~id~d~~~~~~--~~~~~~~~~~~l~~L~~~l~ 336 (568)
T 2wvg_A 270 VEKTMKEADAVIALAPVFNDYSTTGWT--DIPDPKKLVLAEPRSVVVNG--IRFPSVHLKDYLTRLAQKVS 336 (568)
T ss_dssp HHHHHHHCSEEEEESCCCBTTTTTTTT--CCCCTTTEEEECSSEEEETT--EEEESCCHHHHHHHHHHHCC
T ss_pred HHHHHHhCCEEEEECCCcccccccccc--cCCCCCcEEEEeCChhhcCC--eecCCCCHHHHHHHHHHhcc
Confidence 445678899999999987544333331 11246789999988766543 34445567888888887664
No 40
>1djl_A Transhydrogenase DIII; rossmann fold dinucleotide binding fold reverse binding of N oxidoreductase; HET: NAP; 2.00A {Homo sapiens} SCOP: c.31.1.4 PDB: 1pt9_A* 1u31_A*
Probab=70.33 E-value=9.2 Score=35.86 Aligned_cols=74 Identities=15% Similarity=0.258 Sum_probs=51.7
Q ss_pred hhHHHHHhccCCEEEEEccCCCccccC---------cccHHHhcCCCeEEEECCCCCC----CC-----CcccEEEECcH
Q 012378 192 MNPAEKHCKIADVVLCLGTSLQITPAC---------NLPLKCLRGGGKIVIVNLQKTP----KD-----KKASLVIHGFV 253 (465)
Q Consensus 192 ~~~A~~~~~~aDLlLvlGTSL~V~Pa~---------~Lp~~a~~~Ga~lViINl~~t~----~d-----~~adl~I~g~~ 253 (465)
++.+-..+.++|++||||..-.|-|++ .+|..-...-..+|.+.+.-.+ .+ ...+.-+-||+
T Consensus 111 MdeIN~df~~tDv~lVIGANDvVNPaA~~dp~SpI~GMPvL~v~kAk~ViV~KRsm~~GyAgv~NpLF~~~nt~MlfGDA 190 (207)
T 1djl_A 111 MDEINHDFPDTDLVLVIGANDTVNSAAQEDPNSIIAGMPVLEVWKSKQVIVMKRSLGVGYAAVDNPIFYKPNTAMLLGDA 190 (207)
T ss_dssp HHHHGGGGGGCSEEEEESCCGGGCTHHHHCTTSTTTTCCCCCGGGSSEEEEEESSSCCCTTCCCCGGGGSTTEEEEESCH
T ss_pred HHHHhhhhhhcCEEEEeccccccCCccccCCCCCccCCeeecceecCEEEEEECCCCCCcCCCcCcceecCCceEEeccH
Confidence 566677889999999999998886654 3442222223356666665432 22 24667899999
Q ss_pred HHHHHHHHHHhc
Q 012378 254 DKVVAGVMDLLN 265 (465)
Q Consensus 254 devL~~L~~~L~ 265 (465)
.+.+.+|.+.|.
T Consensus 191 K~~~~~l~~~l~ 202 (207)
T 1djl_A 191 KKTCDALQAKVR 202 (207)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998875
No 41
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=69.89 E-value=4.5 Score=42.53 Aligned_cols=67 Identities=15% Similarity=0.175 Sum_probs=45.4
Q ss_pred HHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCCCcccEEEECcHHHHHHHHHHHhc
Q 012378 194 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVVAGVMDLLN 265 (465)
Q Consensus 194 ~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~~adl~I~g~~devL~~L~~~L~ 265 (465)
.+.+.+++||++|++|+.+...+...+.. ...+.++|.|+.++...+. ......++.++++.|.+ +.
T Consensus 269 ~~~~~l~~aD~vl~iG~~~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~--~~~~~~~~~~~l~~L~~-l~ 335 (552)
T 1ovm_A 269 AVKEAIEGADTVLCVGTRFTDTLTAGFTH--QLTPAQTIEVQPHAARVGD--VWFTGIPMNQAIETLVE-LC 335 (552)
T ss_dssp HHHHHHHTSSEEEEESCCCCTTTTTTTCC--CCCTTTEEEECSSEEEETT--EEEESCCHHHHHHHHHH-HH
T ss_pred HHHHHHHhCCEEEEECCCCCccccccccc--CCCCCeEEEEeCChheeCC--cccCCccHHHHHHHHHh-Cc
Confidence 45677889999999999886555444321 1235688999988766554 23334566888888877 54
No 42
>2fsv_C NAD(P) transhydrogenase subunit beta; NAD(P) transhydrogenase subunits, oxidoreductas; HET: NAD NAP; 2.30A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1e3t_A* 1hzz_C* 1nm5_C* 1u28_C* 1u2d_C* 1u2g_C* 2fr8_C* 2frd_C*
Probab=69.76 E-value=9 Score=35.84 Aligned_cols=73 Identities=14% Similarity=0.369 Sum_probs=50.5
Q ss_pred hhHHHHHhccCCEEEEEccCCCccccCc---------ccHHHhcCCCeEEEECCCCCC----CC-----CcccEEEECcH
Q 012378 192 MNPAEKHCKIADVVLCLGTSLQITPACN---------LPLKCLRGGGKIVIVNLQKTP----KD-----KKASLVIHGFV 253 (465)
Q Consensus 192 ~~~A~~~~~~aDLlLvlGTSL~V~Pa~~---------Lp~~a~~~Ga~lViINl~~t~----~d-----~~adl~I~g~~ 253 (465)
++.+-..+.++|++||||..-.|-|+++ +|..-...-..+|.+.+.-.+ .+ ...+.-+-||+
T Consensus 112 MdeIN~df~~tDv~lVIGANDvVNPaA~~dp~SpI~GMPvL~v~kAk~ViV~KRsm~~GyAgv~NpLF~~~nt~MlfGDA 191 (203)
T 2fsv_C 112 LEEINSSFQTADVAFVIGANDVTNPAAKTDPSSPIYGMPILDVWKAGTVLFIKRSMASGYAGVENELFFRNNTMMLFGDA 191 (203)
T ss_dssp HHHHGGGSTTCSEEEEESCCGGGCGGGTSCTTSTTTTCCCCCGGGSSEEEEEESSSCCCTTCCCCGGGGSTTEEEEESCH
T ss_pred HHHHhhhhhhcCEEEEeccccccCchhhcCCCCCcCCCeeeccccCCEEEEEECCCCCCcCCCcCcceecCCceEEeccH
Confidence 5666678889999999999988877654 332222222356666655332 22 24667899999
Q ss_pred HHHHHHHHHHh
Q 012378 254 DKVVAGVMDLL 264 (465)
Q Consensus 254 devL~~L~~~L 264 (465)
.+.+.+|.+.|
T Consensus 192 K~~~~~l~~~l 202 (203)
T 2fsv_C 192 KKMTEQIVQAM 202 (203)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHh
Confidence 99999998775
No 43
>1d4o_A NADP(H) transhydrogenase; nucleotide-binding fold, protein-NADP(H) complex, inverted binding of NADP(H), oxidoreductase; HET: NAP; 1.21A {Bos taurus} SCOP: c.31.1.4
Probab=68.57 E-value=10 Score=34.93 Aligned_cols=74 Identities=15% Similarity=0.258 Sum_probs=51.3
Q ss_pred hhHHHHHhccCCEEEEEccCCCccccC---------cccHHHhcCCCeEEEECCCCCC----CC-----CcccEEEECcH
Q 012378 192 MNPAEKHCKIADVVLCLGTSLQITPAC---------NLPLKCLRGGGKIVIVNLQKTP----KD-----KKASLVIHGFV 253 (465)
Q Consensus 192 ~~~A~~~~~~aDLlLvlGTSL~V~Pa~---------~Lp~~a~~~Ga~lViINl~~t~----~d-----~~adl~I~g~~ 253 (465)
++.+-..+.++|++||||..-.|-|++ .+|..-...-..+|.+.+.-.+ .+ ...+.-+-||+
T Consensus 88 MdeIN~df~~tDv~lVIGANDvVNPaA~~dp~SpI~GMPvl~v~kAk~ViV~KRsm~~GyAgv~NpLF~~~nt~MlfGDA 167 (184)
T 1d4o_A 88 MDEINHDFPDTDLVLVIGANDTVNSAAQEDPNSIIAGMPVLEVWKSKQVIVMKRSLGVGYAAVDNPIFYKPNTAMLLGDA 167 (184)
T ss_dssp HHHHGGGGGGCSEEEEESCSGGGCTHHHHCTTSTTTTCCCCCGGGSSCEEEEESSSCCCTTCCCCGGGGSTTEEEEESCH
T ss_pred HHHHhhhhhhcCEEEEecCCccCCCccccCCCCCccCCeeeehhhCCEEEEEECCCCCCcCCCcCcceecCCceEEeccH
Confidence 566667889999999999998886654 3442222222356666665332 22 24667899999
Q ss_pred HHHHHHHHHHhc
Q 012378 254 DKVVAGVMDLLN 265 (465)
Q Consensus 254 devL~~L~~~L~ 265 (465)
.+.+.+|.+.|.
T Consensus 168 K~~~~~l~~~l~ 179 (184)
T 1d4o_A 168 KKTCDALQAKVR 179 (184)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998875
No 44
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=66.57 E-value=1.9 Score=38.54 Aligned_cols=28 Identities=25% Similarity=0.665 Sum_probs=19.5
Q ss_pred cccCCCCCCcccchhhhhhhccccCCCCCCCCCCCCccc
Q 012378 139 MEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLR 177 (465)
Q Consensus 139 ~~~C~~C~~~y~rd~~~~~i~~~~~~P~C~~p~CGg~Lr 177 (465)
..+|..||+.|... .....| |.||+.++
T Consensus 132 ~y~C~~Cg~~~~~~---------~~~~~C--p~CG~~~~ 159 (165)
T 2lcq_A 132 RYVCIGCGRKFSTL---------PPGGVC--PDCGSKVK 159 (165)
T ss_dssp CEEESSSCCEESSC---------CGGGBC--TTTCCBEE
T ss_pred EEECCCCCCcccCC---------CCCCcC--CCCCCcce
Confidence 46899999987432 112379 89998763
No 45
>2vpz_A Thiosulfate reductase; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_A* 2vpw_A* 2vpy_A*
Probab=65.25 E-value=4.2 Score=44.70 Aligned_cols=54 Identities=19% Similarity=0.145 Sum_probs=40.7
Q ss_pred hccCCEEEEEccCCCc-cc--cCcccHHHhcCCCeEEEECCCCCCCCCcccEEEECc
Q 012378 199 CKIADVVLCLGTSLQI-TP--ACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGF 252 (465)
Q Consensus 199 ~~~aDLlLvlGTSL~V-~P--a~~Lp~~a~~~Ga~lViINl~~t~~d~~adl~I~g~ 252 (465)
+.++|++|++|+.... .| .......++++|+++|.|++..|.....+|.+|.-.
T Consensus 197 ~~~ad~il~~G~n~~~~~p~~~~~~~~~a~~~G~klividPr~t~ta~~Ad~~l~ir 253 (765)
T 2vpz_A 197 WENARYIVLIGHHIGEDTHNTQLQDFALALKNGAKVVVVDPRFSTAAAKAHRWLPIK 253 (765)
T ss_dssp GGGCSEEEEESCCBTTBCCHHHHHHHHHHHHTTCEEEEECSBCCTTGGGCSEEECCC
T ss_pred cccCCEEEEEeCChhhcCChHHHHHHHHHHHCCCEEEEECCCCCcchhhCCeEeCCC
Confidence 6789999999986543 23 222235577889999999999998888889887543
No 46
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=64.12 E-value=5.1 Score=32.59 Aligned_cols=56 Identities=25% Similarity=0.462 Sum_probs=36.8
Q ss_pred CccccCCCCCCcccchhhhhhhc------------------cccCCCCCCCCCCCCcccCcEEeCCCCCChhhhhHHHHH
Q 012378 137 SFMEACPSCGSEYFRDFEVETIG------------------LKETSRRCSDLKCGAKLRDTVLDWEDALPPKEMNPAEKH 198 (465)
Q Consensus 137 l~~~~C~~C~~~y~rd~~~~~i~------------------~~~~~P~C~~p~CGg~LrP~VV~FGE~lp~~~~~~A~~~ 198 (465)
-+...|+-||....+...++.+- ...-.-+| |.||.. ++|..+|.+.-++..+.
T Consensus 6 ~~~~~~PlCG~~L~W~eLIeQML~~en~~ei~kDr~~Fl~~~e~F~FkC--P~CgEE------FyG~~Lp~~EaeKVFEL 77 (95)
T 2k5c_A 6 HHMAKCPICGSPLKWEELIEEMLIIENFEEIVKDRERFLAQVEEFVFKC--PVCGEE------FYGKTLPRREAEKVFEL 77 (95)
T ss_dssp --CEECSSSCCEECHHHHHHHSTTCSTHHHHTTCHHHHHHHHHHSEEEC--TTTCCE------EETTSSCTTTHHHHHHH
T ss_pred cccccCCcCCCccCHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHhhcC--CCccHH------HhcccCChHHHHHHHHH
Confidence 35678999999876554443321 11224689 899986 67999998777776666
Q ss_pred hc
Q 012378 199 CK 200 (465)
Q Consensus 199 ~~ 200 (465)
+.
T Consensus 78 LN 79 (95)
T 2k5c_A 78 LN 79 (95)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 47
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=63.77 E-value=3.1 Score=44.03 Aligned_cols=67 Identities=18% Similarity=0.178 Sum_probs=43.4
Q ss_pred HHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCCCcccEEEECcHHHHHHHHHHHh
Q 012378 194 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVVAGVMDLL 264 (465)
Q Consensus 194 ~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~~adl~I~g~~devL~~L~~~L 264 (465)
.+.+.+++||++|++|+.+.-.....+. ....+.++|.|+.++...+. ......++..+++.|.+.+
T Consensus 288 ~~~~~l~~aDlvl~iG~~~~~~~~~~~~--~~~~~~~~i~id~d~~~~~~--~~~~~~~~~~~l~~L~~~l 354 (570)
T 2vbf_A 288 SLKNFVESADFILMLGVKLTDSSTGAFT--HHLDENKMISLNIDEGIIFN--KVVEDFDFRAVVSSLSELK 354 (570)
T ss_dssp HHHHHHHHCSEEEEESCCCCGGGTTTTC--CCCCGGGEEEECSSCEEETT--EEECSSCHHHHHHTGGGCC
T ss_pred HHHHHHHhCCEEEEECCCcccccccccc--cCCCCCeEEEEeCCHHHhCC--eeecCCCHHHHHHHHHHhc
Confidence 4556788999999999988554443331 11234678999988765544 2334446777777776544
No 48
>2e7z_A Acetylene hydratase AHY; tungstoprotein, DMSO reductase family, iron-sulfur-cluster, lyase; HET: MGD; 1.26A {Pelobacter acetylenicus}
Probab=63.70 E-value=3.6 Score=44.90 Aligned_cols=52 Identities=17% Similarity=0.245 Sum_probs=38.9
Q ss_pred hccCCEEEEEccCCCc-cc--cCcccHHHhcCCCeEEEECCCCCCCCCcccEEEE
Q 012378 199 CKIADVVLCLGTSLQI-TP--ACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIH 250 (465)
Q Consensus 199 ~~~aDLlLvlGTSL~V-~P--a~~Lp~~a~~~Ga~lViINl~~t~~d~~adl~I~ 250 (465)
+.++|++|++|+.... .| .......++++|+++|.|++..|.....+|.+|.
T Consensus 158 ~~~ad~il~~G~n~~~~~p~~~~~~l~~a~~~G~klividPr~t~ta~~Ad~~l~ 212 (727)
T 2e7z_A 158 FADSNCLLFIGKNLSNHNWVSQFNDLKAALKRGCKLIVLDPRRTKVAEMADIWLP 212 (727)
T ss_dssp TTTCSEEEEESCCCBTTBSHHHHHHHHHHHHHTCEEEEECSSCCHHHHHCSEEEC
T ss_pred cccCCEEEEECCChhhcCCHHHHHHHHHHHHCCCeEEEECCCCCcchhhcceeec
Confidence 6789999999987554 23 2222345677899999999998877677888874
No 49
>2bru_C NAD(P) transhydrogenase subunit beta; paramagnetic transhydrogenase, inner membrane, membrane, oxidoreductase, transmembrane; HET: NAD NAP; NMR {Escherichia coli}
Probab=60.13 E-value=8 Score=35.61 Aligned_cols=72 Identities=15% Similarity=0.313 Sum_probs=47.3
Q ss_pred hHHHHHhccCCEEEEEccCCCccccCc---------ccHHHhcCCCeEEEECCCCCC----CC-----CcccEEEECcHH
Q 012378 193 NPAEKHCKIADVVLCLGTSLQITPACN---------LPLKCLRGGGKIVIVNLQKTP----KD-----KKASLVIHGFVD 254 (465)
Q Consensus 193 ~~A~~~~~~aDLlLvlGTSL~V~Pa~~---------Lp~~a~~~Ga~lViINl~~t~----~d-----~~adl~I~g~~d 254 (465)
+.+-..+.++|++||||..-.|-|+++ +|..-...-..+|.+.+.-.+ .+ ...+.-+-||+.
T Consensus 97 deIN~df~~tDv~lVIGANDvVNPaA~~dp~SpI~GMPvL~v~kAk~ViV~KRsm~~GyAgv~NpLF~~~nt~MlfGDAK 176 (186)
T 2bru_C 97 DEINDDFADTDTVLVIGANDTVNPAAQDDPKSPIAGMPVLEVWKAQNVIVFKRSMNTGYAGVQNPLFFKENTHMLFGDAK 176 (186)
T ss_dssp CCCHHHHHHCSEEEECBCGGGGCGGGTTSTTSSSTTCCCCCCTTSSEEEEECSSSCCSSCCCSCTTTBSSSEEEECSCHH
T ss_pred HHHhcccccCCEEEEeccccccCccccCCCCCCcCCCeeeccccCCEEEEEECCCCCCcCCCcCcceecCCceEEeccHH
Confidence 334566788999999999888877654 332222223356666655322 12 246678999999
Q ss_pred HHHHHHHHHh
Q 012378 255 KVVAGVMDLL 264 (465)
Q Consensus 255 evL~~L~~~L 264 (465)
+.+.+|.+.|
T Consensus 177 ~~~~~l~~~l 186 (186)
T 2bru_C 177 ASVDAILKAL 186 (186)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 9999987654
No 50
>2ivf_A Ethylbenzene dehydrogenase alpha-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum}
Probab=55.47 E-value=5.3 Score=45.41 Aligned_cols=55 Identities=11% Similarity=0.141 Sum_probs=41.0
Q ss_pred HhccCCEEEEEccCCCc--cccCcccHHHhcCCCeEEEECCCCCCCCCcccEEEECc
Q 012378 198 HCKIADVVLCLGTSLQI--TPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGF 252 (465)
Q Consensus 198 ~~~~aDLlLvlGTSL~V--~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~~adl~I~g~ 252 (465)
.+.+||++|++|+.... ++.......++++|+++|.|++..+.....+|++|.=.
T Consensus 243 D~~nad~Il~~G~N~~~~~p~~~~~~~~ar~~GakvivVDPr~t~ta~~AD~wl~ir 299 (976)
T 2ivf_A 243 NLLDAELIFMTCSNWSYTYPSSYHFLSEARYKGAEVVVIAPDFNPTTPAADLHVPVR 299 (976)
T ss_dssp GGGGCSEEEEESCCHHHHCTTTHHHHHHHHHHTCEEEEECSSCCTTGGGCSEEECCC
T ss_pred hHhhCcEEEEeCCChhHcccHHHHHHHHHHHcCCEEEEECCCCCcchhhcCeEeccC
Confidence 36789999999986543 22333345677789999999999988878889887443
No 51
>1h0h_A Formate dehydrogenase (large subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: b.52.2.2 c.81.1.1
Probab=55.20 E-value=6.1 Score=44.96 Aligned_cols=54 Identities=20% Similarity=0.276 Sum_probs=40.0
Q ss_pred HhccCCEEEEEccCCCc-ccc-CcccHHHhcCCCeEEEECCCCCCCCCcccEEEEC
Q 012378 198 HCKIADVVLCLGTSLQI-TPA-CNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHG 251 (465)
Q Consensus 198 ~~~~aDLlLvlGTSL~V-~Pa-~~Lp~~a~~~Ga~lViINl~~t~~d~~adl~I~g 251 (465)
.+.+||++|++|+.... .|. ......++++|+++|.|++..|.....+|++|.-
T Consensus 181 D~~~ad~il~~G~N~~~~~p~~~~~~~~a~~~G~klivIDPr~t~ta~~AD~~l~i 236 (977)
T 1h0h_A 181 DLKNSDVILMMGSNPAENHPISFKWVMRAKDKGATLIHVDPRYTRTSTKCDLYAPL 236 (977)
T ss_dssp GGGGCSEEEEESCCHHHHSTTHHHHHHHHHHTTCEEEEECSSCCTTGGGCSEEECC
T ss_pred HHhhCCEEEEECCChHHhCcHHHHHHHHHHHCCCeEEEECCCCCchhHHhCeeecc
Confidence 47789999999986543 231 1222456778999999999998887888887644
No 52
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=51.28 E-value=16 Score=38.69 Aligned_cols=68 Identities=12% Similarity=-0.032 Sum_probs=41.0
Q ss_pred HHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCCCCCCCcccEEEECcHHHHHHHHHHHhc
Q 012378 194 PAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVVAGVMDLLN 265 (465)
Q Consensus 194 ~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~~adl~I~g~~devL~~L~~~L~ 265 (465)
.+.+.+++||++|++|+.+.......+.. .....++|.|+.++...... ....-.+.++++.|...+.
T Consensus 282 ~~~~~l~~aDlvl~iG~~~~~~~~~~~~~--~~~~~~~i~i~~d~~~~~~~--~~~~~~~~~~l~~L~~~l~ 349 (565)
T 2nxw_A 282 EITRLVEESDGLFLLGAILSDTNFAVSQR--KIDLRKTIHAFDRAVTLGYH--TYADIPLAGLVDALLERLP 349 (565)
T ss_dssp HHHHHHHTCSEEEEESCCBCSSTTSBCTT--TSCGGGEEEEETTEEEETTE--EEESCCHHHHHHHHHHTSC
T ss_pred HHHHHHHhCCEEEEECCCccccccccccc--cCCCCcEEEEeCCceeeCCc--ccCCccHHHHHHHHHHhcc
Confidence 45567889999999999775544433311 11224678888766544331 3334456677877776553
No 53
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=51.15 E-value=8.7 Score=27.74 Aligned_cols=36 Identities=22% Similarity=0.417 Sum_probs=20.3
Q ss_pred CccccCCCCCCcccchhhhhhhccccC--CCCCCCCCCCCc
Q 012378 137 SFMEACPSCGSEYFRDFEVETIGLKET--SRRCSDLKCGAK 175 (465)
Q Consensus 137 l~~~~C~~C~~~y~rd~~~~~i~~~~~--~P~C~~p~CGg~ 175 (465)
+...+|..||..|..+.--. ..+... .-+| |.||..
T Consensus 2 m~~y~C~vCGyvyd~~~Gd~-t~f~~lP~dw~C--P~Cg~~ 39 (46)
T 6rxn_A 2 MQKYVCNVCGYEYDPAEHDN-VPFDQLPDDWCC--PVCGVS 39 (46)
T ss_dssp CCCEEETTTCCEECGGGGTT-CCGGGSCTTCBC--TTTCCB
T ss_pred CCEEECCCCCeEEeCCcCCC-cchhhCCCCCcC--cCCCCc
Confidence 45679999998886321100 111111 2278 789864
No 54
>2iv2_X Formate dehydrogenase H; oxidoreductase, 4Fe-4S, anaerobic, complete proteome, direct protein sequencing, Fe4S4, iron, iron sulfur cluster; HET: 2MD MGD; 2.27A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1fdi_A* 1fdo_A* 1aa6_A*
Probab=50.60 E-value=4 Score=44.51 Aligned_cols=55 Identities=22% Similarity=0.296 Sum_probs=39.4
Q ss_pred HhccCCEEEEEccCCCc-ccc-CcccHHHhcCCCeEEEECCCCCCCCCcccEEEECc
Q 012378 198 HCKIADVVLCLGTSLQI-TPA-CNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGF 252 (465)
Q Consensus 198 ~~~~aDLlLvlGTSL~V-~Pa-~~Lp~~a~~~Ga~lViINl~~t~~d~~adl~I~g~ 252 (465)
.+.++|++|++|+.... .|. ......++++|+++|.|++..|.....+|++|.-.
T Consensus 163 di~~ad~il~~G~n~~~~~p~~~~~l~~a~~~G~klividPr~t~ta~~Ad~~l~ir 219 (715)
T 2iv2_X 163 EIDNTDLVFVFGYNPADSHPIVANHVINAKRNGAKIIVCDPRKIETARIADMHIALK 219 (715)
T ss_dssp GGGGCSEEEEESCCHHHHCHHHHHHHHHHHHTTCEEEEECSSCCHHHHTCSEEECCC
T ss_pred HHhcCCEEEEEcCChHHhCHHHHHHHHHHHHCCCeEEEEcCCCCchhHhhCEEeccC
Confidence 36789999999986443 221 11224567789999999999887766788877543
No 55
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=47.68 E-value=8 Score=32.79 Aligned_cols=27 Identities=22% Similarity=0.511 Sum_probs=19.3
Q ss_pred ccccCCCCCCcccchhhhhhhccccCCC-CCCCCCCCCc
Q 012378 138 FMEACPSCGSEYFRDFEVETIGLKETSR-RCSDLKCGAK 175 (465)
Q Consensus 138 ~~~~C~~C~~~y~rd~~~~~i~~~~~~P-~C~~p~CGg~ 175 (465)
...+|..||+.|..+ .... .| |.||+.
T Consensus 72 ~~~~C~~CG~~~e~~---------~~~~~~C--P~Cgs~ 99 (119)
T 2kdx_A 72 VELECKDCSHVFKPN---------ALDYGVC--EKCHSK 99 (119)
T ss_dssp CEEECSSSSCEECSC---------CSTTCCC--SSSSSC
T ss_pred ceEEcCCCCCEEeCC---------CCCCCcC--ccccCC
Confidence 357999999887432 2245 69 899987
No 56
>2nap_A Protein (periplasmic nitrate reductase); nitrogenous acceptor, dissimilatory nitrate reductase; HET: MGD MES; 1.90A {Desulfovibrio desulfuricans} SCOP: b.52.2.2 c.81.1.1 PDB: 2jim_A* 2jir_A* 2jip_A* 2v45_A* 2v3v_A* 2jiq_A* 2jio_A*
Probab=46.73 E-value=6.6 Score=42.73 Aligned_cols=55 Identities=15% Similarity=0.172 Sum_probs=38.9
Q ss_pred HhccCCEEEEEccCCCc-ccc-CcccHHHhcC--CCeEEEECCCCCCCCCcccEEEECc
Q 012378 198 HCKIADVVLCLGTSLQI-TPA-CNLPLKCLRG--GGKIVIVNLQKTPKDKKASLVIHGF 252 (465)
Q Consensus 198 ~~~~aDLlLvlGTSL~V-~Pa-~~Lp~~a~~~--Ga~lViINl~~t~~d~~adl~I~g~ 252 (465)
.+.++|++|++|+.... .|. ......++++ |+++|.|++..+.....+|++|.-.
T Consensus 163 d~~~ad~il~~G~n~~~~~p~~~~~~~~a~~~~~g~klividP~~t~ta~~Ad~~l~ir 221 (723)
T 2nap_A 163 DIDQATCFFIIGSNTSEAHPVLFRRIARRKQVEPGVKIIVADPRRTNTSRIADMHVAFR 221 (723)
T ss_dssp GGGTCSEEEEESCCHHHHSHHHHHHHHHHHHHCTTCEEEEECSBCCGGGGGCSEEECCC
T ss_pred hHhHCCEEEEEcCChhHhCcHHHHHHHHHHhhCCCCEEEEEcCcCCchhhhhCeeeecC
Confidence 36789999999986443 221 1112345555 9999999999988878888887543
No 57
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp}
Probab=45.98 E-value=21 Score=32.49 Aligned_cols=57 Identities=9% Similarity=-0.066 Sum_probs=44.0
Q ss_pred HHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEE-CCCCCCCCCcc---cEEEECcH
Q 012378 197 KHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIV-NLQKTPKDKKA---SLVIHGFV 253 (465)
Q Consensus 197 ~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViI-Nl~~t~~d~~a---dl~I~g~~ 253 (465)
..+.+-|++|++-.|..+.-.......+++.|+++|.| +....+..+.+ |+.|.-+.
T Consensus 110 ~~~~~~Dvvi~iS~SG~t~~~~~~~~~ak~~g~~vi~iT~~~~s~la~~a~~~d~~l~~~~ 170 (201)
T 3trj_A 110 ALGNEDDILLVITTSGDSENILSAVEEAHDLEMKVIALTGGSGGALQNMYNTDDIELRVPS 170 (201)
T ss_dssp HHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEETTCCGGGGTCCTTCEEEEESC
T ss_pred hhCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCcEEEEECCCCCHHHHhhccCCEEEEeCC
Confidence 45788999999999999888777778889999998876 44555666667 87775544
No 58
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=45.96 E-value=14 Score=32.86 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=21.1
Q ss_pred HHHHHHHHHhCCcEEEEecCCcc
Q 012378 34 IEQLAKLIQKSKHLVVFTGAGIS 56 (465)
Q Consensus 34 i~~la~lIk~Ak~IVVlTGAGIS 56 (465)
+++++++|++|++.||+.|.|+.
T Consensus 24 v~~aa~~L~~AkrPvil~G~g~~ 46 (170)
T 3cf4_G 24 PEMAAKIISKAKRPLLMVGTLAL 46 (170)
T ss_dssp HHHHHHHHHHCSSEEEEECSTTC
T ss_pred HHHHHHHHHcCCCCEEEECCCcc
Confidence 78999999999999999998865
No 59
>1kqf_A FDH-N alpha, formate dehydrogenase, nitrate-inducible, major S; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1kqg_A*
Probab=45.79 E-value=7.6 Score=44.37 Aligned_cols=54 Identities=17% Similarity=0.238 Sum_probs=39.4
Q ss_pred HhccCCEEEEEccCCCc-cc-cCcccHHHh-cCCCeEEEECCCCCCCCCcccEEEEC
Q 012378 198 HCKIADVVLCLGTSLQI-TP-ACNLPLKCL-RGGGKIVIVNLQKTPKDKKASLVIHG 251 (465)
Q Consensus 198 ~~~~aDLlLvlGTSL~V-~P-a~~Lp~~a~-~~Ga~lViINl~~t~~d~~adl~I~g 251 (465)
.+.+||++|++|+.... .| .......++ ++|+++|.|++..|.....+|++|.-
T Consensus 219 D~~~ad~il~~G~N~~~~~p~~~~~i~~a~~~~GaklivIDPr~t~ta~~AD~~l~i 275 (1015)
T 1kqf_A 219 DIKNANVVMVMGGNAAEAHPVGFRWAMEAKNNNDATLIVVDPRFTRTASVADIYAPI 275 (1015)
T ss_dssp GGGGCSEEEEESCCHHHHSTTTTHHHHHHHHHSCCEEEEECSSCCHHHHTCSEEECC
T ss_pred HHhhCCEEEEECCChhhhCchHHHHHHHHHHHCCCeEEEEeCCCCchhHhhCeeecc
Confidence 47789999999986543 23 222334566 78999999999888766678877644
No 60
>1eu1_A Dimethyl sulfoxide reductase; molybdenum, molybdenum cofactor, DMSO, molybdopte oxidoreductase; HET: GLC MGD EPE; 1.30A {Rhodobacter sphaeroides} SCOP: b.52.2.2 c.81.1.1 PDB: 4dmr_A* 1dmr_A* 1e5v_A* 1h5n_A* 2dmr_A* 3dmr_A* 1e61_A* 1e60_A* 1e18_A* 1dms_A*
Probab=44.41 E-value=7 Score=43.01 Aligned_cols=53 Identities=9% Similarity=0.038 Sum_probs=37.8
Q ss_pred HhccCCEEEEEccCCCc-cccC---------cccHHHhcCCCeEEEECCCCCCCCCcc-cEEEE
Q 012378 198 HCKIADVVLCLGTSLQI-TPAC---------NLPLKCLRGGGKIVIVNLQKTPKDKKA-SLVIH 250 (465)
Q Consensus 198 ~~~~aDLlLvlGTSL~V-~Pa~---------~Lp~~a~~~Ga~lViINl~~t~~d~~a-dl~I~ 250 (465)
.+.+||++|++|+.... .|.. .....++++|+++|.|++..|.....+ |++|.
T Consensus 174 d~~~ad~il~~G~N~~~~~~~~~~~~~~~~~~~l~~a~~~G~klivIDPr~t~ta~~aad~~l~ 237 (780)
T 1eu1_A 174 VVENTDLMVFWAADPMKTNEIGWVIPDHGAYAGMKALKEKGTRVIAINPVRTETADYFGADVVS 237 (780)
T ss_dssp HHHHCSEEEEESCCHHHHTTCCSSBCCCHHHHHHHHHHHHTCEEEEESSBCCHHHHHHTCEEEC
T ss_pred HHhhCCEEEEECCCHHHhcCCCCcccccchHHHHHHHHHCCCeEEEECCCCCCcccccCCEEee
Confidence 56789999999986543 3321 122456678999999999888765555 77775
No 61
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=43.92 E-value=13 Score=32.79 Aligned_cols=57 Identities=12% Similarity=-0.116 Sum_probs=42.7
Q ss_pred HHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEE-CCCCCCCCCcccEEEECc
Q 012378 196 EKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIV-NLQKTPKDKKASLVIHGF 252 (465)
Q Consensus 196 ~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViI-Nl~~t~~d~~adl~I~g~ 252 (465)
...+.+-|++|++-.|....-.......++++|+++|.| |....+..+.+|+.|.-.
T Consensus 105 ~~~~~~~Dvvi~iS~sG~t~~~~~~~~~ak~~g~~vi~iT~~~~s~L~~~ad~~l~~~ 162 (188)
T 1tk9_A 105 EALGNEKDVLIGISTSGKSPNVLEALKKAKELNMLCLGLSGKGGGMMNKLCDHNLVVP 162 (188)
T ss_dssp HHHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEEGGGTTHHHHCSEEEEES
T ss_pred HHhCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCcchHHcCCEEEEeC
Confidence 345778899999999998877777777888999988776 334455556677776544
No 62
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=43.56 E-value=8.3 Score=34.38 Aligned_cols=63 Identities=11% Similarity=0.062 Sum_probs=35.8
Q ss_pred HHhccCCEEEEEccCC--CccccCcccHHHhcCCCeEEEECCCCCCCCCcccEEEEC-cHHHHHHHHHHHhc
Q 012378 197 KHCKIADVVLCLGTSL--QITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHG-FVDKVVAGVMDLLN 265 (465)
Q Consensus 197 ~~~~~aDLlLvlGTSL--~V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~~adl~I~g-~~devL~~L~~~L~ 265 (465)
+.+++|||+|++|+.+ .-.....+. .... .++|.|+....+. ....+.. ...++++.|.+.+.
T Consensus 103 ~~~~~aDlvl~iG~~~~~~~~~t~~~~--~~~~-~~iI~i~~~~~~~---~~~~~~~l~~~~~l~~L~~~~~ 168 (170)
T 3cf4_G 103 DGNGNYDMIITIGFKKFYINQVLSAAK--NFSN-LKTIAIERGYIQN---ATMSFGNLSKADHYAALDELIN 168 (170)
T ss_dssp SSSCCCSEEEEESCCHHHHHHHHHHHH--HHCC-CCEEECSSSCCTT---SSEECCCCCHHHHHHHHHHHHH
T ss_pred HHhhcCCEEEEECCccCcccccccccc--ccCC-CeEEEECCCcccc---hhhhhccCCHHHHHHHHHHHHh
Confidence 4578899999999987 332211221 1123 6777666543221 1233322 46788888876653
No 63
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=38.96 E-value=12 Score=27.29 Aligned_cols=30 Identities=23% Similarity=0.505 Sum_probs=18.1
Q ss_pred cccCCCCCCcccchhhhhhhccccCCCCCCCCCCCCc
Q 012378 139 MEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAK 175 (465)
Q Consensus 139 ~~~C~~C~~~y~rd~~~~~i~~~~~~P~C~~p~CGg~ 175 (465)
...|..||+++..+.. + .-+ .-+| |.||=.
T Consensus 3 iY~C~rCg~~fs~~el-~---~lP-~IrC--pyCGyr 32 (48)
T 4ayb_P 3 VYRCGKCWKTFTDEQL-K---VLP-GVRC--PYCGYK 32 (48)
T ss_dssp --CCCCTTTTCCCCCS-C---CCS-SSCC--TTTCCS
T ss_pred EEEeeccCCCccHHHH-h---hCC-Cccc--CccCcE
Confidence 4589999998865421 1 112 3379 899954
No 64
>1q16_A Respiratory nitrate reductase 1 alpha chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 3ir7_A* 1y5i_A* 1siw_A* 1y4z_A* 1r27_A* 1y5l_A* 1y5n_A* 3ir6_A* 3ir5_A* 3egw_A*
Probab=38.93 E-value=8.5 Score=45.23 Aligned_cols=54 Identities=17% Similarity=0.166 Sum_probs=39.4
Q ss_pred HhccCCEEEEEccCCCc--cccCcccHHHhcCCCeEEEECCCCCCCCCcccEEEEC
Q 012378 198 HCKIADVVLCLGTSLQI--TPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHG 251 (465)
Q Consensus 198 ~~~~aDLlLvlGTSL~V--~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~~adl~I~g 251 (465)
.+.+||++|++|+.... ++.......++++|+++|.|++..+.....+|++|.=
T Consensus 243 D~~~ad~iv~wGsN~~~t~~~~~~~l~~ar~~G~KvVvIDPr~t~ta~~AD~wl~i 298 (1247)
T 1q16_A 243 DWYNSSYIIAWGSNVPQTRTPDAHFFTEVRYKGTKTVAVTPDYAEIAKLCDLWLAP 298 (1247)
T ss_dssp GGGGCSEEEEESCCHHHHSGGGHHHHHHHGGGTCEEEEECSSCCHHHHHSSEEECC
T ss_pred HHhhCCEEEEECCCchhccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhCCeEEee
Confidence 35689999999987532 2333334557778999999999888766677877643
No 65
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=37.83 E-value=11 Score=32.99 Aligned_cols=17 Identities=18% Similarity=0.399 Sum_probs=12.2
Q ss_pred CCccccCCCCCCcccch
Q 012378 136 NSFMEACPSCGSEYFRD 152 (465)
Q Consensus 136 nl~~~~C~~C~~~y~rd 152 (465)
.-...+|..||+.|..+
T Consensus 67 ~p~~~~C~~CG~~~~~~ 83 (139)
T 3a43_A 67 EEAVFKCRNCNYEWKLK 83 (139)
T ss_dssp ECCEEEETTTCCEEEGG
T ss_pred cCCcEECCCCCCEEecc
Confidence 33457999999887543
No 66
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=36.18 E-value=23 Score=31.43 Aligned_cols=57 Identities=12% Similarity=-0.034 Sum_probs=42.7
Q ss_pred HHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECC-CCCCCCCc---ccEEEECcH
Q 012378 197 KHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNL-QKTPKDKK---ASLVIHGFV 253 (465)
Q Consensus 197 ~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl-~~t~~d~~---adl~I~g~~ 253 (465)
..+.+-|++|++-.|..+.-.......++++|+++|.|-- ...+..+. +|+.|.-..
T Consensus 105 ~~~~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~s~la~~~~~ad~~l~~~~ 165 (196)
T 2yva_A 105 ALGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVEIRIPS 165 (196)
T ss_dssp HHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTTCHHHHTTCCTTSEEEECSC
T ss_pred hcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCchhhhcccCCCEEEEeCC
Confidence 5578889999999999988877777888999999877643 33444444 777776543
No 67
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=36.07 E-value=32 Score=25.53 Aligned_cols=14 Identities=29% Similarity=0.470 Sum_probs=11.2
Q ss_pred ccccCCCCCCcccc
Q 012378 138 FMEACPSCGSEYFR 151 (465)
Q Consensus 138 ~~~~C~~C~~~y~r 151 (465)
...+|..||..|..
T Consensus 2 ~~y~C~vCGyvYd~ 15 (54)
T 4rxn_A 2 KKYTCTVCGYIYDP 15 (54)
T ss_dssp CCEEETTTCCEECT
T ss_pred CceECCCCCeEECC
Confidence 45789999988864
No 68
>1ti6_A Pyrogallol hydroxytransferase large subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.52.2.2 c.81.1.1 PDB: 1ti2_A* 1ti4_A* 1vld_M* 1vle_M* 1vlf_M*
Probab=35.66 E-value=10 Score=42.37 Aligned_cols=54 Identities=9% Similarity=0.013 Sum_probs=37.7
Q ss_pred HHhccCCEEEEEccCCCccccC-------cccHHHhcCCCeEEEECCCCCCCCCc-ccEEEE
Q 012378 197 KHCKIADVVLCLGTSLQITPAC-------NLPLKCLRGGGKIVIVNLQKTPKDKK-ASLVIH 250 (465)
Q Consensus 197 ~~~~~aDLlLvlGTSL~V~Pa~-------~Lp~~a~~~Ga~lViINl~~t~~d~~-adl~I~ 250 (465)
+.+.+||++|++|+.....|.. .+...++++|+++|.|++..|..... +|++|.
T Consensus 204 ~~~~~ad~il~~G~Np~~~p~~~~~~~~~~~~~~a~~~G~klivIDPr~t~ta~~~Ad~~l~ 265 (875)
T 1ti6_A 204 DGLKHAEMIVFWSSDPETNSGIYAGFESNIRRQWLKDLGVDFVFIDPHMNHTARLVADKWFS 265 (875)
T ss_dssp HHHHHCSEEEEESCCHHHHCSSSCTTTTHHHHHHHHHTTCEEEEECSBCCHHHHHHCSEEEC
T ss_pred hHHhcCCEEEEECCChhhCCccCCCccchHHHHHHHHcCCeEEEECCCCCCcccccCCEEec
Confidence 3478999999999976334542 12122777999999999988775554 576653
No 69
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=35.30 E-value=15 Score=40.79 Aligned_cols=56 Identities=21% Similarity=0.140 Sum_probs=38.0
Q ss_pred HHHhccCCEEEEEccCCCc-cccCcc-cHHH-------------------------hcCCCeEEEECCCCCCCCCcccEE
Q 012378 196 EKHCKIADVVLCLGTSLQI-TPACNL-PLKC-------------------------LRGGGKIVIVNLQKTPKDKKASLV 248 (465)
Q Consensus 196 ~~~~~~aDLlLvlGTSL~V-~Pa~~L-p~~a-------------------------~~~Ga~lViINl~~t~~d~~adl~ 248 (465)
...+.++|++|++| .... .|.... ...+ .++|+++|.|++..|.....+|.+
T Consensus 387 ~~di~~ad~Il~~G-Np~~~~P~~~~rlr~a~~~~~~~~~~~~g~~~~~~~v~~~~~~~g~klividPr~t~ta~~Ad~~ 465 (783)
T 3i9v_3 387 LEDLLQADFALVLG-DPTEEAPILHLRLSEFVRDLKPPHRYNHGTPFADLQIKERMPRRTDKMALFAPYRAPLMKWAAIH 465 (783)
T ss_dssp HHHHHHCSCEEEES-CHHHHSTHHHHHHHHHHTTCCCCCCBTTBSCSSCTTCCTTCCCCTTSEEEEESSCCGGGTTCSEE
T ss_pred HHHHhhCCEEEEeC-ChhHhCcHHHHHHHHHHHhcccchhhcccccchhhhhhhhhhcCCCEEEEEeCCcchhhHhhcce
Confidence 34566899999999 5442 332111 1112 157899999999999988888887
Q ss_pred EECc
Q 012378 249 IHGF 252 (465)
Q Consensus 249 I~g~ 252 (465)
+.-.
T Consensus 466 l~i~ 469 (783)
T 3i9v_3 466 EVHR 469 (783)
T ss_dssp EECC
T ss_pred EecC
Confidence 6543
No 70
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A
Probab=34.84 E-value=34 Score=31.02 Aligned_cols=57 Identities=16% Similarity=0.054 Sum_probs=43.8
Q ss_pred HHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEE-CCCCCCCCCcccEEEECcH
Q 012378 197 KHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIV-NLQKTPKDKKASLVIHGFV 253 (465)
Q Consensus 197 ~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViI-Nl~~t~~d~~adl~I~g~~ 253 (465)
..+.+-|++|++-.|....-.......++++|+++|.| |....++.+.+|+.|.-..
T Consensus 127 ~~~~~~DvvI~iS~SG~t~~~i~~~~~ak~~G~~vIaIT~~~~s~La~~aD~~l~~~~ 184 (212)
T 2i2w_A 127 AVGREGDVLLGISTSGNSANVIKAIAAAREKGMKVITLTGKDGGKMAGTADIEIRVPH 184 (212)
T ss_dssp HHCCTTCEEEEECSSSCCHHHHHHHHHHHHHTCEEEEEEETTCGGGTTCSSEEEEECC
T ss_pred hcCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEEcCC
Confidence 45788999999999998877777777888889987665 4445667778888876554
No 71
>1tmo_A TMAO reductase, trimethylamine N-oxide reductase; oxidoreductase, oxotransferase, molybdoenzyme, MO-cofactor, molybdenum; HET: 2MD; 2.50A {Shewanella massilia} SCOP: b.52.2.2 c.81.1.1
Probab=34.05 E-value=13 Score=41.14 Aligned_cols=52 Identities=6% Similarity=0.006 Sum_probs=36.8
Q ss_pred hccCCEEEEEccCCCc-ccc---------CcccHHHhc---CCC-eEEEECCCCCCCCCcc-cEEEE
Q 012378 199 CKIADVVLCLGTSLQI-TPA---------CNLPLKCLR---GGG-KIVIVNLQKTPKDKKA-SLVIH 250 (465)
Q Consensus 199 ~~~aDLlLvlGTSL~V-~Pa---------~~Lp~~a~~---~Ga-~lViINl~~t~~d~~a-dl~I~ 250 (465)
+.+||++|++|+.... .|. ......+++ +|+ ++|.|++..|.....+ |++|.
T Consensus 208 ~~~ad~il~~G~Np~~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~klivIDPr~t~ta~~a~d~~l~ 274 (829)
T 1tmo_A 208 LEHSDTIVLWSNDPYKNLQVGWNAETHESFAYLAQLKEKVKQGKIRVISIDPVVTKTQAYLGCEQLY 274 (829)
T ss_dssp HHHCSEEEEESCCHHHHTSCCSSBCCCTHHHHHHHHHHHHHHTSSEEEEECSSCCHHHHHHTCEEEC
T ss_pred HhhCCEEEEECCChhhccccccccccchHHHHHHHHHHHhhCCCceEEEECCCCCCcchhhcCEEec
Confidence 6789999999986542 222 122234566 799 9999999988766666 77763
No 72
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=34.00 E-value=15 Score=33.70 Aligned_cols=28 Identities=18% Similarity=0.348 Sum_probs=19.0
Q ss_pred CccccCCCCCCcccchhhhhhhccccCCCCCCCCCCCCc
Q 012378 137 SFMEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAK 175 (465)
Q Consensus 137 l~~~~C~~C~~~y~rd~~~~~i~~~~~~P~C~~p~CGg~ 175 (465)
....+|..||..|..+ ..+..| |.||..
T Consensus 153 ~~~~~C~~CG~~~~g~---------~~p~~C--P~C~~~ 180 (191)
T 1lko_A 153 ATKWRCRNCGYVHEGT---------GAPELC--PACAHP 180 (191)
T ss_dssp EEEEEETTTCCEEEEE---------ECCSBC--TTTCCB
T ss_pred CceEEECCCCCEeeCC---------CCCCCC--CCCcCC
Confidence 3368999999887532 112278 889975
No 73
>3ml1_A NAPA, periplasmic nitrate reductase; heterodimer, oxidoreductase; HET: MGD HEC; 1.60A {Ralstonia eutropha} PDB: 3o5a_A* 1ogy_A* 2nya_A*
Probab=33.90 E-value=17 Score=40.35 Aligned_cols=54 Identities=13% Similarity=0.058 Sum_probs=37.7
Q ss_pred HhccCCEEEEEccCCCc-cccC-cccHHHh--cCCCeEEEECCCCCCCCCcccEEEEC
Q 012378 198 HCKIADVVLCLGTSLQI-TPAC-NLPLKCL--RGGGKIVIVNLQKTPKDKKASLVIHG 251 (465)
Q Consensus 198 ~~~~aDLlLvlGTSL~V-~Pa~-~Lp~~a~--~~Ga~lViINl~~t~~d~~adl~I~g 251 (465)
.+.+||++|++|+.... .|.. .....++ ++|+++|.|++-.|.....+|++|.=
T Consensus 175 d~~~ad~il~~G~N~~~~~p~~~~~i~~a~~~~~G~klivIDPr~t~ta~~AD~~l~i 232 (802)
T 3ml1_A 175 DFEAADAFVLWGSNMAEMHPILWTRVTDRRLSHPKTRVVVLSTFTHRCFDLADIGIIF 232 (802)
T ss_dssp GGGTCSEEEEESCCHHHHSHHHHHHHHHHHHHSTTCEEEEEESSBCGGGGTCSEEEEC
T ss_pred HHhhCCEEEEECCChHHhChHHHHHHHHHHHhcCCCEEEEEeCCCCchhHHhccEecc
Confidence 47789999999986543 3321 1112233 47999999999999887788877643
No 74
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=32.85 E-value=17 Score=32.86 Aligned_cols=26 Identities=35% Similarity=0.723 Sum_probs=18.0
Q ss_pred ccccCCCCCCcccchhhhhhhccccCCCCCCCCCCCCc
Q 012378 138 FMEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAK 175 (465)
Q Consensus 138 ~~~~C~~C~~~y~rd~~~~~i~~~~~~P~C~~p~CGg~ 175 (465)
..++|+.||..|.. ..+..| |.||..
T Consensus 137 ~~~~C~~CG~i~~~----------~~p~~C--P~Cg~~ 162 (170)
T 3pwf_A 137 KVYICPICGYTAVD----------EAPEYC--PVCGAP 162 (170)
T ss_dssp CEEECTTTCCEEES----------CCCSBC--TTTCCB
T ss_pred CeeEeCCCCCeeCC----------CCCCCC--CCCCCC
Confidence 34689999988752 123478 899964
No 75
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=31.94 E-value=31 Score=26.89 Aligned_cols=16 Identities=25% Similarity=0.453 Sum_probs=12.7
Q ss_pred CCccccCCCCCCcccc
Q 012378 136 NSFMEACPSCGSEYFR 151 (465)
Q Consensus 136 nl~~~~C~~C~~~y~r 151 (465)
.+...+|..||..|..
T Consensus 4 ~m~~y~C~vCGyiYd~ 19 (70)
T 1dx8_A 4 DEGKYECEACGYIYEP 19 (70)
T ss_dssp CSSCEEETTTCCEECT
T ss_pred CCceEEeCCCCEEEcC
Confidence 4567899999988864
No 76
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=29.81 E-value=38 Score=29.82 Aligned_cols=58 Identities=12% Similarity=-0.060 Sum_probs=42.9
Q ss_pred HHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEEC-CCCCCCCCcccEEEECcHH
Q 012378 197 KHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVN-LQKTPKDKKASLVIHGFVD 254 (465)
Q Consensus 197 ~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViIN-l~~t~~d~~adl~I~g~~d 254 (465)
..+.+-|++|++-.|..+.........++++|+++|.|- ....+..+.+|++|.-..+
T Consensus 112 ~~~~~~d~vI~iS~SG~t~~~~~~~~~ak~~g~~vI~IT~~~~s~L~~~ad~~l~~~~~ 170 (198)
T 2xbl_A 112 ALGNEGDVLIGYSTSGKSPNILAAFREAKAKGMTCVGFTGNRGGEMRELCDLLLEVPSA 170 (198)
T ss_dssp HHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECSCCCTHHHHCSEEEECSCS
T ss_pred hhCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCCcHHHhCCEEEEeCCC
Confidence 457788999999999988777777778889999877664 3445555667777765433
No 77
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=29.40 E-value=30 Score=29.21 Aligned_cols=27 Identities=26% Similarity=0.705 Sum_probs=17.7
Q ss_pred cccCCCCCCcccchhhhhhhccccCCCCCCCCCCCCc
Q 012378 139 MEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAK 175 (465)
Q Consensus 139 ~~~C~~C~~~y~rd~~~~~i~~~~~~P~C~~p~CGg~ 175 (465)
..+|.+||..| .+ . -..+.+| |.|++.
T Consensus 67 p~~C~~CG~~F-~~----~---~~kPsrC--P~CkSe 93 (105)
T 2gmg_A 67 PAQCRKCGFVF-KA----E---INIPSRC--PKCKSE 93 (105)
T ss_dssp CCBBTTTCCBC-CC----C---SSCCSSC--SSSCCC
T ss_pred CcChhhCcCee-cc----c---CCCCCCC--cCCCCC
Confidence 36899999887 21 1 1124689 889864
No 78
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=29.19 E-value=33 Score=25.17 Aligned_cols=14 Identities=36% Similarity=0.671 Sum_probs=11.2
Q ss_pred ccccCCCCCCcccc
Q 012378 138 FMEACPSCGSEYFR 151 (465)
Q Consensus 138 ~~~~C~~C~~~y~r 151 (465)
...+|..||..|..
T Consensus 2 ~~y~C~~CGyvYd~ 15 (52)
T 1e8j_A 2 DIYVCTVCGYEYDP 15 (52)
T ss_dssp CCEECSSSCCCCCT
T ss_pred CcEEeCCCCeEEcC
Confidence 45789999988863
No 79
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=28.64 E-value=22 Score=31.10 Aligned_cols=53 Identities=13% Similarity=0.066 Sum_probs=36.4
Q ss_pred hccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECC-CCCCCCCcccEEEEC
Q 012378 199 CKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNL-QKTPKDKKASLVIHG 251 (465)
Q Consensus 199 ~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl-~~t~~d~~adl~I~g 251 (465)
+.+-|++|++-.|....-.......+++.|+++|.|-- ...+....+|+.|.-
T Consensus 94 ~~~~d~vI~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s~la~~ad~~l~~ 147 (183)
T 2xhz_A 94 VTPQDVVIAISNSGESSEITALIPVLKRLHVPLICITGRPESSMARAADVHLCV 147 (183)
T ss_dssp CCTTCEEEEECSSSCCHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHSSEEEEC
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEECCCCChhHHhCCEEEEe
Confidence 55678999998888887777777778888888776633 334444455655544
No 80
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=28.57 E-value=17 Score=30.16 Aligned_cols=14 Identities=57% Similarity=0.952 Sum_probs=11.7
Q ss_pred CcEEEEecCCcccc
Q 012378 45 KHLVVFTGAGISTS 58 (465)
Q Consensus 45 k~IVVlTGAGISta 58 (465)
++|++..|||+||+
T Consensus 4 kkIll~Cg~G~sTS 17 (106)
T 1e2b_A 4 KHIYLFSSAGMSTS 17 (106)
T ss_dssp EEEEEECSSSTTTH
T ss_pred cEEEEECCCchhHH
Confidence 56889999999886
No 81
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=28.08 E-value=23 Score=31.06 Aligned_cols=58 Identities=9% Similarity=0.052 Sum_probs=41.2
Q ss_pred HHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECC-CCCCCCCcccEEEECc
Q 012378 195 AEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNL-QKTPKDKKASLVIHGF 252 (465)
Q Consensus 195 A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl-~~t~~d~~adl~I~g~ 252 (465)
....+.+-|++|++-.|..+.-.......+++.|+++|.|-- ...+..+.+|+.|.-.
T Consensus 81 ~~~~~~~~d~~i~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~~~ 139 (187)
T 3sho_A 81 TLANLRPTDLMIGVSVWRYLRDTVAALAGAAERGVPTMALTDSSVSPPARIADHVLVAA 139 (187)
T ss_dssp HHHTCCTTEEEEEECCSSCCHHHHHHHHHHHHTTCCEEEEESCTTSHHHHHCSEEEECC
T ss_pred HHhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEeCCCCCcchhhCcEEEEec
Confidence 345677889999999998887777777788889998877643 3444444566666543
No 82
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=26.64 E-value=25 Score=31.44 Aligned_cols=54 Identities=15% Similarity=0.166 Sum_probs=37.6
Q ss_pred HhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECC-CCCCCCCcccEEEEC
Q 012378 198 HCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNL-QKTPKDKKASLVIHG 251 (465)
Q Consensus 198 ~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl-~~t~~d~~adl~I~g 251 (465)
.+.+-|++|++-.|..+.........+++.|+++|.|-- ...+..+.+|+.|.-
T Consensus 89 ~~~~~dvvI~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~~ 143 (201)
T 3fxa_A 89 VLQKEDILILISKGGNTGELLNLIPACKTKGSTLIGVTENPDSVIAKEADIFFPV 143 (201)
T ss_dssp GCCTTCEEEEECSSSCCHHHHTTHHHHHHHTCEEEEEESCTTSHHHHHCSEEEEC
T ss_pred cCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEECCCCChhHHhCCEEEEc
Confidence 355678999998888887777777778888888777643 344444556666643
No 83
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=26.59 E-value=37 Score=32.29 Aligned_cols=42 Identities=17% Similarity=0.289 Sum_probs=28.2
Q ss_pred ceEEcCCCCccccCCCCCCcccchhhhhhhccccCCCCCCCCCCCCccc
Q 012378 129 KLAELHGNSFMEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAKLR 177 (465)
Q Consensus 129 kViELHGnl~~~~C~~C~~~y~rd~~~~~i~~~~~~P~C~~p~CGg~Lr 177 (465)
-|+.++|. .|..|+-..+..... .+.....+..| |+||..|-
T Consensus 192 avv~v~~~----~C~GC~~~lppq~~~-~i~~~~~Iv~C--p~CgRIL~ 233 (256)
T 3na7_A 192 SIVTIKKQ----ACGGCFIRLNDKIYT-EVLTSGDMITC--PYCGRILY 233 (256)
T ss_dssp SEEECBTT----BCTTTCCBCCHHHHH-HHHHSSSCEEC--TTTCCEEE
T ss_pred eEEEeeCC----ccCCCCeeeCHHHHH-HHHCCCCEEEC--CCCCeeEE
Confidence 37777774 899999877654332 22234456789 89998764
No 84
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=26.58 E-value=32 Score=26.84 Aligned_cols=28 Identities=25% Similarity=0.669 Sum_probs=18.5
Q ss_pred ccccCCCCCCcccchhhhhhhccccCCCCCCCCCCCCc
Q 012378 138 FMEACPSCGSEYFRDFEVETIGLKETSRRCSDLKCGAK 175 (465)
Q Consensus 138 ~~~~C~~C~~~y~rd~~~~~i~~~~~~P~C~~p~CGg~ 175 (465)
....|..||..+... .....+| |.||..
T Consensus 27 v~Y~C~~CG~~~e~~--------~~d~irC--p~CG~R 54 (70)
T 1twf_L 27 LKYICAECSSKLSLS--------RTDAVRC--KDCGHR 54 (70)
T ss_dssp CCEECSSSCCEECCC--------TTSTTCC--SSSCCC
T ss_pred EEEECCCCCCcceeC--------CCCCccC--CCCCce
Confidence 345899999876432 1124589 799983
No 85
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=24.75 E-value=29 Score=25.76 Aligned_cols=14 Identities=29% Similarity=0.380 Sum_probs=11.1
Q ss_pred ccccCCCCCCcccc
Q 012378 138 FMEACPSCGSEYFR 151 (465)
Q Consensus 138 ~~~~C~~C~~~y~r 151 (465)
...+|..||..|..
T Consensus 2 ~~y~C~~CGyvYd~ 15 (55)
T 2v3b_B 2 RKWQCVVCGFIYDE 15 (55)
T ss_dssp CEEEETTTCCEEET
T ss_pred CcEEeCCCCeEECC
Confidence 45789999988854
No 86
>1ytl_A Acetyl-COA decarboxylase/synthase complex epsilon 2; structural genomics; 1.80A {Archaeoglobus fulgidus} SCOP: c.31.1.6
Probab=24.66 E-value=34 Score=30.96 Aligned_cols=65 Identities=12% Similarity=0.052 Sum_probs=0.0
Q ss_pred hccCCEEEEEccCCC--ccccCcccHHHhcCCCeEEEECCCCCCCCCcccEEEECcHHHHHHHHHHHhc
Q 012378 199 CKIADVVLCLGTSLQ--ITPACNLPLKCLRGGGKIVIVNLQKTPKDKKASLVIHGFVDKVVAGVMDLLN 265 (465)
Q Consensus 199 ~~~aDLlLvlGTSL~--V~Pa~~Lp~~a~~~Ga~lViINl~~t~~d~~adl~I~g~~devL~~L~~~L~ 265 (465)
.++|||+|.||+.+. ......+ .....++++|-||..-.+--...--.+..+.+++...+.+.++
T Consensus 106 ~~~aDLvI~iG~rf~~~~~~t~~~--~~fap~akii~Idk~~~~da~~~l~~L~~~~~~w~~~l~~~~~ 172 (174)
T 1ytl_A 106 QGNYDLVLMLGSIYYHGSQMLAAI--KNFAPHIRALAIDRYYHPNADMSFGNLWKKEEDYLKLLDEILA 172 (174)
T ss_dssp SCCCSEEEEESCCHHHHHHHHHHH--HHHCTTCEEEECSSSCCTTSSEECCCCGGGHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCcCCccccccccc--cccCCCCeEEEeCCCcCCCHHHHHHHHHhchHHHHHHHHHHHh
No 87
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=24.41 E-value=50 Score=21.40 Aligned_cols=38 Identities=16% Similarity=0.263 Sum_probs=22.7
Q ss_pred CCCCccccCCCCCCcccchhhhh---hhccccCCCCCCCCCCC
Q 012378 134 HGNSFMEACPSCGSEYFRDFEVE---TIGLKETSRRCSDLKCG 173 (465)
Q Consensus 134 HGnl~~~~C~~C~~~y~rd~~~~---~i~~~~~~P~C~~p~CG 173 (465)
|-.-....|..|++.|.....+. .....+....| |.||
T Consensus 5 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C--~~cg 45 (45)
T 2epq_A 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSG--PSSG 45 (45)
T ss_dssp CSSCCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCC--CCCC
T ss_pred cCCCCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCC--cCCC
Confidence 55555678999999886543322 11222345578 6776
No 88
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=24.34 E-value=49 Score=28.71 Aligned_cols=51 Identities=14% Similarity=0.113 Sum_probs=29.6
Q ss_pred hccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCC-CCCCCCcccEEEE
Q 012378 199 CKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQ-KTPKDKKASLVIH 250 (465)
Q Consensus 199 ~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~-~t~~d~~adl~I~ 250 (465)
+.+-|++|++-.|....-.......+++.|+++|.|--. .. ....+|+.|.
T Consensus 80 ~~~~d~vi~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s-l~~~ad~~l~ 131 (180)
T 1jeo_A 80 YEKDDLLILISGSGRTESVLTVAKKAKNINNNIIAIVCECGN-VVEFADLTIP 131 (180)
T ss_dssp CCTTCEEEEEESSSCCHHHHHHHHHHHTTCSCEEEEESSCCG-GGGGCSEEEE
T ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEEEEeCCCCh-HHHhCCEEEE
Confidence 345577777777776655555556666777766655332 23 4445555553
No 89
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=23.34 E-value=35 Score=27.47 Aligned_cols=15 Identities=33% Similarity=0.552 Sum_probs=12.3
Q ss_pred CccccCCCCCCcccc
Q 012378 137 SFMEACPSCGSEYFR 151 (465)
Q Consensus 137 l~~~~C~~C~~~y~r 151 (465)
+...+|..||..|..
T Consensus 25 m~~y~C~vCGyvYD~ 39 (81)
T 2kn9_A 25 YKLFRCIQCGFEYDE 39 (81)
T ss_dssp CCEEEETTTCCEEET
T ss_pred cceEEeCCCCEEEcC
Confidence 567899999988864
No 90
>3cvj_A Putative phosphoheptose isomerase; rossman fold, 3-layer (ABA) sandwich, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.00A {Bacillus halodurans c-125}
Probab=22.93 E-value=27 Score=32.33 Aligned_cols=37 Identities=16% Similarity=0.276 Sum_probs=28.5
Q ss_pred hccCCEEEEEccCCCccccCcccHHHhcCCCeEEEEC
Q 012378 199 CKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVN 235 (465)
Q Consensus 199 ~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViIN 235 (465)
+.+-|++|++-.|....-...+...|++.|+++|.|-
T Consensus 106 ~~~~Dv~I~iS~SG~t~~~i~~~~~Ak~~G~~vI~IT 142 (243)
T 3cvj_A 106 VTNKDVIMIISNSGRNTVPVEMAIESRNIGAKVIAMT 142 (243)
T ss_dssp CCTTCEEEEECSSCCSHHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 5667888888888887777777777888888877763
No 91
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=22.70 E-value=64 Score=28.50 Aligned_cols=57 Identities=12% Similarity=-0.054 Sum_probs=42.7
Q ss_pred HHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECC-CCCCCCCc---ccEEEECcH
Q 012378 197 KHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNL-QKTPKDKK---ASLVIHGFV 253 (465)
Q Consensus 197 ~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl-~~t~~d~~---adl~I~g~~ 253 (465)
..+.+-|++|++-.|..+.-.......++++|+++|.|-- ...+..+. +|+.|.-..
T Consensus 109 ~~~~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~s~La~~~~~ad~~l~~~~ 169 (199)
T 1x92_A 109 ALGQPGDVLLAISTSGNSANVIQAIQAAHDREMLVVALTGRDGGGMASLLLPEDVEIRVPS 169 (199)
T ss_dssp HHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHCCTTCEEEECSC
T ss_pred hCCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCcHHhccccCCEEEEeCC
Confidence 4578889999999999988777777888999999877633 33444456 787776543
No 92
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=22.68 E-value=34 Score=31.39 Aligned_cols=55 Identities=13% Similarity=0.186 Sum_probs=38.5
Q ss_pred HHhccCCEEEEEccCCCccccCcccHHHhc--CCCeEEEEC-CCCCCCCCcccEEEEC
Q 012378 197 KHCKIADVVLCLGTSLQITPACNLPLKCLR--GGGKIVIVN-LQKTPKDKKASLVIHG 251 (465)
Q Consensus 197 ~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~--~Ga~lViIN-l~~t~~d~~adl~I~g 251 (465)
..+.+-|++|++-.|..+.-.......+++ +|+++|.|- ....+..+.+|+.|.-
T Consensus 102 ~~~~~~DlvI~iS~SG~t~~~i~~~~~ak~~~~Ga~vI~IT~~~~s~La~~aD~~l~~ 159 (220)
T 3etn_A 102 GILQENDLLLLISNSGKTREIVELTQLAHNLNPGLKFIVITGNPDSPLASESDVCLST 159 (220)
T ss_dssp GGCCTTCEEEEECSSSCCHHHHHHHHHHHHHCTTCEEEEEESCTTSHHHHHSSEEEEC
T ss_pred ccCCCCCEEEEEcCCCCCHHHHHHHHHHHhcCCCCeEEEEECCCCChhHHhCCEEEEc
Confidence 356678899999988887777677777888 899877764 3344444456665543
No 93
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=22.37 E-value=65 Score=28.34 Aligned_cols=31 Identities=13% Similarity=0.274 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEecCCccccC
Q 012378 28 QILQEKIEQLAKLIQKSKHLVVFTGAGISTSC 59 (465)
Q Consensus 28 ~~l~~ki~~la~lIk~Ak~IVVlTGAGIStaS 59 (465)
+.+++.++.+++.|.++++|+ +.|.|-|...
T Consensus 25 ~~i~~~~~~~~~~i~~a~~I~-i~G~G~S~~~ 55 (196)
T 2yva_A 25 DAISRAAMTLVQSLLNGNKIL-CCGNGTSAAN 55 (196)
T ss_dssp HHHHHHHHHHHHHHHTTCCEE-EEESTHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCEEE-EEeCchhhHH
Confidence 346678999999999998765 5688877643
No 94
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=21.76 E-value=1.1e+02 Score=30.13 Aligned_cols=87 Identities=10% Similarity=-0.023 Sum_probs=50.9
Q ss_pred CcEEeCCCCCC--hhhhhHHHHHhccCCEEEEEccCCCccccCcccHHHhcCCCeEEEECCCC----CCCCCcccEEEEC
Q 012378 178 DTVLDWEDALP--PKEMNPAEKHCKIADVVLCLGTSLQITPACNLPLKCLRGGGKIVIVNLQK----TPKDKKASLVIHG 251 (465)
Q Consensus 178 P~VV~FGE~lp--~~~~~~A~~~~~~aDLlLvlGTSL~V~Pa~~Lp~~a~~~Ga~lViINl~~----t~~d~~adl~I~g 251 (465)
|++..|++-=. ....+++.+.++++|++||||..-. .-..+|...+.+.|.+.+.|.-.. .-+.....+-|-+
T Consensus 184 p~~~~~~tIC~AT~~RQ~av~~la~~~D~miVVGg~nS-SNT~rL~eia~~~~~~ty~Ie~~~el~~~wl~~~~~VGITA 262 (297)
T 3dnf_A 184 KEVKVINTICNATSLRQESVKKLAPEVDVMIIIGGKNS-GNTRRLYYISKELNPNTYHIETAEELQPEWFRGVKRVGISA 262 (297)
T ss_dssp SEEEEECCCCSHHHHHHHHHHHHGGGSSEEEEESCTTC-HHHHHHHHHHHHHCSSEEEESSGGGCCGGGGTTCSEEEEEE
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHhhCCEEEEECCCCC-chhHHHHHHHHhcCCCEEEeCChHHCCHHHhCCCCEEEEee
Confidence 45555543222 2234556678889999999997322 223466667777777777776432 1123344566655
Q ss_pred c---HHHHHHHHHHHhc
Q 012378 252 F---VDKVVAGVMDLLN 265 (465)
Q Consensus 252 ~---~devL~~L~~~L~ 265 (465)
. .+.++.++.+.|.
T Consensus 263 GASTP~~li~eVi~~l~ 279 (297)
T 3dnf_A 263 GASTPDWIIEQVKSRIQ 279 (297)
T ss_dssp CTTCCHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHH
Confidence 3 3456677776663
No 95
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=21.41 E-value=34 Score=27.93 Aligned_cols=15 Identities=27% Similarity=0.510 Sum_probs=12.3
Q ss_pred CccccCCCCCCcccc
Q 012378 137 SFMEACPSCGSEYFR 151 (465)
Q Consensus 137 l~~~~C~~C~~~y~r 151 (465)
+...+|..||..|..
T Consensus 33 m~~y~C~vCGyvYD~ 47 (87)
T 1s24_A 33 YLKWICITCGHIYDE 47 (87)
T ss_dssp CCEEEETTTTEEEET
T ss_pred CceEECCCCCeEecC
Confidence 567899999988854
Done!