Query 012379
Match_columns 465
No_of_seqs 154 out of 248
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 02:01:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012379.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012379hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2751 Beclin-like protein [S 100.0 8E-105 2E-109 812.6 35.7 411 3-425 22-442 (447)
2 PF04111 APG6: Autophagy prote 100.0 5.3E-98 1E-102 753.0 24.9 304 117-428 1-313 (314)
3 PF10186 Atg14: UV radiation r 99.4 7.7E-11 1.7E-15 115.9 26.2 244 116-362 11-273 (302)
4 KOG2751 Beclin-like protein [S 99.1 5.4E-10 1.2E-14 116.5 12.7 331 13-435 22-398 (447)
5 KOG2896 UV radiation resistanc 98.6 7.4E-06 1.6E-10 84.7 22.3 159 189-362 126-309 (377)
6 PF04111 APG6: Autophagy prote 97.4 0.044 9.6E-07 56.4 23.0 213 138-367 42-311 (314)
7 COG1579 Zn-ribbon protein, pos 97.0 0.032 7E-07 55.6 15.8 126 125-250 10-138 (239)
8 KOG0250 DNA repair protein RAD 96.9 0.061 1.3E-06 62.8 18.8 131 122-252 327-466 (1074)
9 TIGR02169 SMC_prok_A chromosom 96.1 0.18 4E-06 58.5 16.9 68 180-247 434-501 (1164)
10 PF04156 IncA: IncA protein; 95.9 0.51 1.1E-05 44.4 16.1 98 125-228 88-185 (191)
11 PF11932 DUF3450: Protein of u 95.8 0.87 1.9E-05 45.1 18.0 27 249-277 166-192 (251)
12 COG1196 Smc Chromosome segrega 95.7 0.35 7.6E-06 57.7 17.3 100 185-292 437-540 (1163)
13 PRK03918 chromosome segregatio 95.7 0.49 1.1E-05 54.1 17.8 23 212-234 304-326 (880)
14 KOG0979 Structural maintenance 95.7 0.63 1.4E-05 54.3 18.3 111 119-230 197-312 (1072)
15 PHA02562 46 endonuclease subun 95.7 0.26 5.7E-06 53.3 14.9 33 116-149 284-316 (562)
16 TIGR02169 SMC_prok_A chromosom 95.6 0.58 1.3E-05 54.5 18.6 13 343-355 534-546 (1164)
17 PF04849 HAP1_N: HAP1 N-termin 95.6 0.92 2E-05 46.9 17.5 157 94-252 116-306 (306)
18 COG1579 Zn-ribbon protein, pos 95.5 0.9 2E-05 45.5 16.6 101 165-277 95-203 (239)
19 PRK11637 AmiB activator; Provi 95.4 0.32 7E-06 51.6 14.4 74 128-207 43-116 (428)
20 PF08317 Spc7: Spc7 kinetochor 95.2 1.2 2.7E-05 45.8 17.2 29 92-120 78-106 (325)
21 TIGR02168 SMC_prok_B chromosom 95.0 1.2 2.6E-05 51.7 18.5 11 344-354 533-543 (1179)
22 PRK11637 AmiB activator; Provi 95.0 1.7 3.6E-05 46.3 18.2 65 171-235 175-239 (428)
23 TIGR02168 SMC_prok_B chromosom 94.9 1.7 3.6E-05 50.5 19.3 20 344-363 1025-1044(1179)
24 KOG0250 DNA repair protein RAD 94.7 1.1 2.5E-05 52.7 16.9 118 183-327 390-508 (1074)
25 COG4942 Membrane-bound metallo 94.7 0.87 1.9E-05 48.9 14.8 85 116-210 26-110 (420)
26 KOG0996 Structural maintenance 94.6 1.1 2.4E-05 53.1 16.4 96 174-285 536-633 (1293)
27 smart00787 Spc7 Spc7 kinetocho 94.4 3.6 7.8E-05 42.6 18.3 159 92-250 73-260 (312)
28 PF07888 CALCOCO1: Calcium bin 94.4 2.2 4.9E-05 47.3 17.5 31 176-206 202-232 (546)
29 PRK09039 hypothetical protein; 94.3 2.3 5.1E-05 44.4 16.8 22 401-422 282-303 (343)
30 PF04156 IncA: IncA protein; 94.2 4.6 0.0001 37.9 17.2 66 129-200 85-150 (191)
31 PF10168 Nup88: Nuclear pore c 94.1 1.9 4E-05 49.5 16.8 169 114-305 529-708 (717)
32 PF13851 GAS: Growth-arrest sp 94.1 5.1 0.00011 38.9 17.6 27 126-152 28-54 (201)
33 KOG0994 Extracellular matrix g 94.1 1.2 2.5E-05 53.0 14.9 80 180-262 1225-1307(1758)
34 TIGR02894 DNA_bind_RsfA transc 94.0 1 2.2E-05 42.6 12.1 18 125-142 54-71 (161)
35 PF00261 Tropomyosin: Tropomyo 94.0 2.7 5.8E-05 41.5 15.7 80 171-250 125-204 (237)
36 COG1196 Smc Chromosome segrega 93.9 2.7 5.8E-05 50.4 18.4 55 94-149 150-217 (1163)
37 PRK03918 chromosome segregatio 93.9 2.2 4.7E-05 48.9 17.1 8 110-117 133-140 (880)
38 PRK02224 chromosome segregatio 93.8 2.3 5E-05 48.9 17.1 7 319-325 754-760 (880)
39 PHA02562 46 endonuclease subun 93.8 1.6 3.4E-05 47.3 15.0 24 130-153 186-209 (562)
40 PF07888 CALCOCO1: Calcium bin 93.7 4 8.7E-05 45.4 17.8 33 164-196 204-236 (546)
41 PRK02224 chromosome segregatio 93.7 1.7 3.7E-05 50.0 15.7 28 224-251 594-621 (880)
42 PF10146 zf-C4H2: Zinc finger- 93.6 2.6 5.6E-05 42.0 14.8 43 164-206 37-79 (230)
43 PRK10884 SH3 domain-containing 93.2 2.2 4.9E-05 41.7 13.5 80 126-214 94-173 (206)
44 PF00261 Tropomyosin: Tropomyo 93.2 8.7 0.00019 37.9 17.8 83 166-248 127-209 (237)
45 KOG4360 Uncharacterized coiled 93.2 3.8 8.3E-05 45.1 16.2 123 138-263 194-316 (596)
46 KOG0995 Centromere-associated 93.2 5.5 0.00012 44.3 17.7 16 11-26 15-30 (581)
47 TIGR01843 type_I_hlyD type I s 93.1 3.5 7.6E-05 42.5 15.7 47 229-276 246-292 (423)
48 PRK04863 mukB cell division pr 93.0 3.6 7.9E-05 50.7 17.6 22 128-149 317-338 (1486)
49 COG2433 Uncharacterized conser 93.0 4.3 9.4E-05 45.5 16.5 89 165-253 421-512 (652)
50 PF10211 Ax_dynein_light: Axon 93.0 6 0.00013 38.1 15.8 67 175-247 122-188 (189)
51 COG4026 Uncharacterized protei 92.9 0.64 1.4E-05 46.2 9.1 73 163-235 139-211 (290)
52 PF08317 Spc7: Spc7 kinetochor 92.8 7.5 0.00016 40.1 17.4 29 124-152 148-176 (325)
53 TIGR01843 type_I_hlyD type I s 92.8 9.3 0.0002 39.4 18.2 22 128-149 84-105 (423)
54 PF10473 CENP-F_leu_zip: Leuci 92.8 8.1 0.00018 35.8 16.1 45 166-210 59-103 (140)
55 KOG0995 Centromere-associated 92.7 9 0.0002 42.7 18.5 31 124-154 258-288 (581)
56 PRK04778 septation ring format 92.6 3 6.6E-05 46.2 15.1 56 94-151 254-312 (569)
57 COG4372 Uncharacterized protei 92.5 6.1 0.00013 42.3 16.2 35 173-207 144-178 (499)
58 TIGR01000 bacteriocin_acc bact 92.3 5.3 0.00011 42.9 16.0 26 128-153 175-200 (457)
59 PF15619 Lebercilin: Ciliary p 92.2 7.4 0.00016 37.7 15.4 16 128-143 22-37 (194)
60 KOG0999 Microtubule-associated 92.1 5.7 0.00012 44.3 15.9 31 164-194 154-184 (772)
61 PF08614 ATG16: Autophagy prot 92.1 1.1 2.4E-05 42.9 9.6 24 127-150 76-99 (194)
62 KOG0977 Nuclear envelope prote 92.1 8.9 0.00019 42.7 17.5 21 90-110 64-84 (546)
63 KOG0243 Kinesin-like protein [ 92.0 6.8 0.00015 46.5 17.3 113 127-239 443-556 (1041)
64 COG4985 ABC-type phosphate tra 92.0 4.7 0.0001 40.5 13.8 103 162-291 160-270 (289)
65 PRK10884 SH3 domain-containing 91.9 3.9 8.4E-05 40.0 13.2 76 167-252 94-169 (206)
66 PRK04863 mukB cell division pr 91.8 3.9 8.5E-05 50.4 15.9 34 217-250 444-477 (1486)
67 PF15035 Rootletin: Ciliary ro 91.8 12 0.00026 36.0 16.2 97 124-220 15-132 (182)
68 KOG4673 Transcription factor T 91.8 14 0.0003 42.3 18.6 51 103-155 389-439 (961)
69 PF12718 Tropomyosin_1: Tropom 91.7 11 0.00024 34.8 15.6 30 220-249 113-142 (143)
70 KOG0999 Microtubule-associated 91.7 7.4 0.00016 43.4 16.1 55 169-223 110-178 (772)
71 KOG0964 Structural maintenance 91.6 4.7 0.0001 47.4 15.2 174 162-354 414-618 (1200)
72 PF06120 Phage_HK97_TLTM: Tail 91.5 7 0.00015 40.5 15.2 74 129-203 38-111 (301)
73 TIGR03185 DNA_S_dndD DNA sulfu 91.5 5.9 0.00013 44.5 15.9 67 130-204 181-247 (650)
74 PF05266 DUF724: Protein of un 91.5 13 0.00028 36.0 16.1 56 184-239 128-183 (190)
75 PF09789 DUF2353: Uncharacteri 91.4 5.8 0.00013 41.4 14.6 125 123-247 84-228 (319)
76 PF12325 TMF_TATA_bd: TATA ele 91.4 5.9 0.00013 35.7 12.9 32 124-155 15-46 (120)
77 PF15285 BH3: Beclin-1 BH3 dom 91.3 0.086 1.9E-06 35.1 0.8 19 93-111 7-25 (25)
78 PF00038 Filament: Intermediat 91.2 18 0.00039 36.4 19.3 76 170-248 213-288 (312)
79 PF06156 DUF972: Protein of un 91.0 0.91 2E-05 40.1 7.2 15 253-268 81-95 (107)
80 KOG0996 Structural maintenance 90.9 11 0.00023 45.4 17.4 15 343-357 1134-1148(1293)
81 PF09755 DUF2046: Uncharacteri 90.9 15 0.00031 38.4 16.6 15 94-108 25-39 (310)
82 KOG2072 Translation initiation 90.8 8.1 0.00018 44.8 15.8 147 100-250 520-698 (988)
83 PF12325 TMF_TATA_bd: TATA ele 90.7 12 0.00027 33.7 16.3 43 164-206 21-63 (120)
84 KOG2391 Vacuolar sorting prote 90.6 25 0.00055 37.1 20.3 55 138-198 224-278 (365)
85 COG4942 Membrane-bound metallo 90.6 24 0.00052 38.3 18.5 10 260-269 286-295 (420)
86 PRK04778 septation ring format 90.5 8.9 0.00019 42.6 16.0 71 167-237 356-426 (569)
87 PF09726 Macoilin: Transmembra 90.5 5.6 0.00012 45.5 14.7 26 181-206 546-571 (697)
88 PF10146 zf-C4H2: Zinc finger- 90.5 16 0.00034 36.5 16.0 64 178-241 37-100 (230)
89 TIGR00606 rad50 rad50. This fa 90.5 5.7 0.00012 48.3 15.5 6 269-274 1159-1164(1311)
90 TIGR00606 rad50 rad50. This fa 90.4 14 0.00031 45.0 18.7 38 162-199 825-862 (1311)
91 PRK09039 hypothetical protein; 90.3 14 0.0003 38.7 16.2 26 124-149 80-105 (343)
92 PF00038 Filament: Intermediat 90.2 22 0.00048 35.8 17.7 35 215-249 103-137 (312)
93 PF09755 DUF2046: Uncharacteri 90.2 23 0.0005 37.0 17.3 58 126-183 136-202 (310)
94 PF10481 CENP-F_N: Cenp-F N-te 90.1 17 0.00037 37.4 16.0 113 127-256 20-136 (307)
95 PF08614 ATG16: Autophagy prot 90.1 7.8 0.00017 37.0 13.2 8 225-232 168-175 (194)
96 KOG0161 Myosin class II heavy 89.9 16 0.00035 46.2 18.7 37 181-217 951-987 (1930)
97 PF04012 PspA_IM30: PspA/IM30 89.8 20 0.00043 34.6 18.0 127 114-245 21-149 (221)
98 PRK01156 chromosome segregatio 89.8 12 0.00025 43.5 16.7 34 217-250 411-444 (895)
99 PRK01156 chromosome segregatio 89.7 12 0.00027 43.3 17.0 19 119-137 167-185 (895)
100 PF09789 DUF2353: Uncharacteri 89.6 23 0.00049 37.1 17.0 167 129-305 13-223 (319)
101 PF07106 TBPIP: Tat binding pr 89.6 4.3 9.2E-05 37.8 10.8 71 118-188 65-138 (169)
102 PF07926 TPR_MLP1_2: TPR/MLP1/ 89.3 16 0.00035 32.9 16.9 33 216-248 99-131 (132)
103 KOG0161 Myosin class II heavy 89.2 22 0.00047 45.2 19.1 31 172-202 956-986 (1930)
104 COG5185 HEC1 Protein involved 89.2 19 0.00042 39.6 16.5 26 91-121 153-178 (622)
105 PF10498 IFT57: Intra-flagella 89.2 14 0.00031 39.1 15.5 45 163-207 249-293 (359)
106 COG4372 Uncharacterized protei 89.1 24 0.00052 38.0 16.8 13 414-426 453-465 (499)
107 TIGR02977 phageshock_pspA phag 89.1 19 0.00042 35.1 15.3 44 100-145 3-51 (219)
108 TIGR02680 conserved hypothetic 89.0 11 0.00025 46.1 16.5 34 395-428 608-641 (1353)
109 PF09730 BicD: Microtubule-ass 89.0 17 0.00036 41.9 16.8 35 165-199 82-116 (717)
110 KOG2264 Exostosin EXT1L [Signa 89.0 3.7 7.9E-05 45.9 11.1 84 178-275 91-182 (907)
111 PF10212 TTKRSYEDQ: Predicted 88.7 13 0.00029 41.1 15.1 78 171-251 439-516 (518)
112 PF12718 Tropomyosin_1: Tropom 88.7 20 0.00043 33.1 16.8 19 130-148 5-23 (143)
113 COG2433 Uncharacterized conser 88.4 8.9 0.00019 43.1 13.7 78 165-242 428-508 (652)
114 KOG0804 Cytoplasmic Zn-finger 88.3 22 0.00047 38.9 16.1 18 229-246 428-445 (493)
115 TIGR01010 BexC_CtrB_KpsE polys 88.3 34 0.00074 35.4 19.2 165 124-299 169-346 (362)
116 PF05384 DegS: Sensor protein 88.0 24 0.00053 33.3 16.1 65 164-228 46-118 (159)
117 KOG1853 LIS1-interacting prote 87.8 24 0.00051 36.1 15.1 81 172-255 51-134 (333)
118 KOG0933 Structural maintenance 87.8 18 0.00039 42.9 16.1 55 348-410 1027-1081(1174)
119 KOG0288 WD40 repeat protein Ti 87.7 17 0.00037 39.3 14.7 107 129-235 10-117 (459)
120 KOG1962 B-cell receptor-associ 87.5 8.8 0.00019 38.1 11.8 13 118-130 111-123 (216)
121 PF10168 Nup88: Nuclear pore c 87.4 48 0.001 38.3 19.2 24 227-250 637-660 (717)
122 TIGR03752 conj_TIGR03752 integ 87.4 8 0.00017 42.3 12.4 74 176-249 69-143 (472)
123 TIGR03007 pepcterm_ChnLen poly 87.2 34 0.00073 36.9 17.2 35 216-250 349-383 (498)
124 KOG0982 Centrosomal protein Nu 87.2 20 0.00044 38.9 14.9 29 224-252 362-390 (502)
125 PF05266 DUF724: Protein of un 87.1 30 0.00066 33.5 15.6 110 133-242 63-179 (190)
126 PF00769 ERM: Ezrin/radixin/mo 87.0 16 0.00034 36.6 13.6 39 171-209 59-97 (246)
127 PF09726 Macoilin: Transmembra 87.0 65 0.0014 37.2 23.7 30 125-154 418-447 (697)
128 PF15070 GOLGA2L5: Putative go 86.8 25 0.00053 39.9 16.3 19 408-426 488-506 (617)
129 PF10186 Atg14: UV radiation r 86.7 34 0.00074 33.7 17.7 39 169-207 59-97 (302)
130 TIGR03185 DNA_S_dndD DNA sulfu 86.6 45 0.00098 37.6 18.4 44 164-207 426-469 (650)
131 KOG0977 Nuclear envelope prote 86.5 27 0.00059 39.0 16.1 20 130-149 111-130 (546)
132 PRK09841 cryptic autophosphory 86.4 43 0.00093 38.4 18.3 33 122-154 264-296 (726)
133 KOG0980 Actin-binding protein 86.4 52 0.0011 38.8 18.5 81 171-251 436-516 (980)
134 PRK00409 recombination and DNA 86.1 14 0.00031 42.7 14.4 21 90-110 387-407 (782)
135 COG5185 HEC1 Protein involved 85.9 21 0.00046 39.3 14.4 53 171-223 335-390 (622)
136 PF06160 EzrA: Septation ring 85.7 28 0.00061 38.8 15.9 181 119-304 276-487 (560)
137 KOG0933 Structural maintenance 85.4 33 0.00071 40.9 16.5 18 23-40 573-590 (1174)
138 PRK11519 tyrosine kinase; Prov 85.4 41 0.00088 38.5 17.4 33 217-249 365-397 (719)
139 KOG1899 LAR transmembrane tyro 85.4 15 0.00033 41.6 13.4 23 100-122 83-106 (861)
140 PF11932 DUF3450: Protein of u 85.4 29 0.00063 34.3 14.5 8 378-385 240-247 (251)
141 TIGR01069 mutS2 MutS2 family p 85.3 12 0.00027 43.3 13.3 47 168-214 517-563 (771)
142 TIGR02894 DNA_bind_RsfA transc 85.2 15 0.00033 34.9 11.6 33 175-207 99-131 (161)
143 PF05700 BCAS2: Breast carcino 85.2 6.4 0.00014 38.6 9.6 45 164-208 173-217 (221)
144 KOG0612 Rho-associated, coiled 85.1 24 0.00052 42.7 15.4 11 138-148 514-524 (1317)
145 KOG1029 Endocytic adaptor prot 85.0 23 0.00049 41.2 14.7 13 16-28 127-139 (1118)
146 PF05701 WEMBL: Weak chloropla 84.5 56 0.0012 36.1 17.5 41 166-206 316-356 (522)
147 PRK00409 recombination and DNA 84.4 20 0.00043 41.6 14.5 38 169-206 523-560 (782)
148 PF05667 DUF812: Protein of un 84.3 51 0.0011 37.3 17.2 95 191-297 423-517 (594)
149 PF11414 Suppressor_APC: Adeno 84.1 16 0.00034 31.2 10.1 56 164-219 5-62 (84)
150 KOG0804 Cytoplasmic Zn-finger 84.0 37 0.0008 37.2 15.1 32 206-237 419-450 (493)
151 PF12329 TMF_DNA_bd: TATA elem 83.8 18 0.0004 29.8 10.3 27 178-204 17-43 (74)
152 PF14662 CCDC155: Coiled-coil 83.6 46 0.001 32.5 16.6 43 164-206 72-114 (193)
153 PF00769 ERM: Ezrin/radixin/mo 83.4 52 0.0011 33.0 16.9 76 171-246 45-120 (246)
154 PF09730 BicD: Microtubule-ass 83.2 48 0.001 38.3 16.6 79 163-241 66-147 (717)
155 PF10267 Tmemb_cc2: Predicted 83.2 28 0.0006 37.5 13.9 31 124-154 211-241 (395)
156 PRK09841 cryptic autophosphory 83.1 44 0.00095 38.3 16.5 35 216-250 364-398 (726)
157 PF06005 DUF904: Protein of un 83.0 25 0.00054 29.0 11.7 41 169-209 7-47 (72)
158 TIGR03752 conj_TIGR03752 integ 82.9 14 0.0003 40.5 11.7 74 176-249 62-136 (472)
159 TIGR03319 YmdA_YtgF conserved 82.7 35 0.00076 37.8 15.0 18 258-276 208-225 (514)
160 PF10473 CENP-F_leu_zip: Leuci 82.6 41 0.00089 31.2 17.5 34 167-200 53-86 (140)
161 TIGR01069 mutS2 MutS2 family p 82.5 28 0.00061 40.4 14.7 19 91-109 383-401 (771)
162 cd07674 F-BAR_FCHO1 The F-BAR 82.4 57 0.0012 32.6 16.8 64 130-193 118-181 (261)
163 KOG4438 Centromere-associated 82.3 57 0.0012 35.5 15.7 75 212-305 213-288 (446)
164 TIGR02231 conserved hypothetic 82.3 24 0.00052 38.6 13.5 34 217-250 140-173 (525)
165 PF11180 DUF2968: Protein of u 82.3 46 0.00099 32.6 13.7 95 143-251 89-183 (192)
166 PRK10698 phage shock protein P 82.2 54 0.0012 32.3 18.0 51 194-244 99-149 (222)
167 TIGR01000 bacteriocin_acc bact 82.1 78 0.0017 34.0 17.8 27 224-250 238-264 (457)
168 PF15066 CAGE1: Cancer-associa 82.0 64 0.0014 35.6 16.0 39 206-244 487-525 (527)
169 PF06005 DUF904: Protein of un 81.8 28 0.00061 28.7 11.5 35 173-207 18-52 (72)
170 KOG0964 Structural maintenance 81.8 42 0.00091 40.0 15.4 29 213-241 326-354 (1200)
171 PRK12704 phosphodiesterase; Pr 81.8 40 0.00086 37.4 15.0 13 258-270 214-226 (520)
172 PF14197 Cep57_CLD_2: Centroso 81.7 18 0.00039 29.6 9.3 31 124-154 4-34 (69)
173 PF08647 BRE1: BRE1 E3 ubiquit 81.7 33 0.00071 29.5 11.4 64 132-201 3-66 (96)
174 PRK13169 DNA replication intia 81.6 5.7 0.00012 35.4 6.9 15 253-268 78-92 (110)
175 KOG4403 Cell surface glycoprot 81.6 39 0.00085 36.9 14.1 67 222-299 347-414 (575)
176 TIGR02231 conserved hypothetic 81.6 17 0.00036 39.8 12.0 43 164-206 129-171 (525)
177 KOG1937 Uncharacterized conser 81.6 90 0.0019 34.4 17.2 68 179-246 344-427 (521)
178 PF05278 PEARLI-4: Arabidopsis 81.3 24 0.00051 36.2 12.0 152 92-250 93-263 (269)
179 PF04849 HAP1_N: HAP1 N-termin 81.2 70 0.0015 33.4 15.5 83 163-245 164-264 (306)
180 TIGR02338 gimC_beta prefoldin, 81.1 25 0.00055 30.6 10.8 36 169-204 70-105 (110)
181 PRK10361 DNA recombination pro 81.0 95 0.0021 34.3 17.5 30 171-200 90-119 (475)
182 KOG4674 Uncharacterized conser 80.9 75 0.0016 40.4 17.9 77 126-202 130-207 (1822)
183 KOG4360 Uncharacterized coiled 80.8 53 0.0011 36.6 15.0 35 165-199 232-266 (596)
184 PF12128 DUF3584: Protein of u 80.7 74 0.0016 38.7 17.9 10 388-397 1026-1035(1201)
185 KOG0982 Centrosomal protein Nu 80.7 59 0.0013 35.6 15.0 14 140-153 280-293 (502)
186 cd00632 Prefoldin_beta Prefold 80.7 29 0.00062 29.9 10.9 37 169-205 66-102 (105)
187 TIGR02680 conserved hypothetic 80.4 1.1E+02 0.0024 37.9 19.3 10 99-108 180-189 (1353)
188 PRK11281 hypothetical protein; 80.4 47 0.001 40.3 15.8 26 128-153 83-108 (1113)
189 TIGR00570 cdk7 CDK-activating 80.3 38 0.00083 35.3 13.3 13 114-126 26-38 (309)
190 KOG3647 Predicted coiled-coil 80.3 73 0.0016 32.9 14.9 32 92-123 53-84 (338)
191 PRK00106 hypothetical protein; 80.2 63 0.0014 36.2 15.8 18 258-276 229-246 (535)
192 KOG0979 Structural maintenance 80.2 50 0.0011 39.4 15.4 16 402-417 563-578 (1072)
193 KOG0239 Kinesin (KAR3 subfamil 80.1 65 0.0014 37.0 16.2 61 171-231 232-292 (670)
194 KOG0243 Kinesin-like protein [ 80.0 1.2E+02 0.0026 36.6 18.5 21 123-143 402-422 (1041)
195 PF12128 DUF3584: Protein of u 80.0 85 0.0018 38.2 18.1 11 388-398 581-591 (1201)
196 PF03961 DUF342: Protein of un 79.8 16 0.00034 39.4 10.8 88 111-198 320-407 (451)
197 PF10234 Cluap1: Clusterin-ass 79.3 71 0.0015 32.7 14.7 31 169-199 186-216 (267)
198 PRK08032 fliD flagellar cappin 79.3 7.8 0.00017 42.0 8.4 50 185-237 411-460 (462)
199 COG1382 GimC Prefoldin, chaper 79.2 38 0.00081 30.8 11.3 25 128-152 16-40 (119)
200 KOG0980 Actin-binding protein 79.2 1E+02 0.0022 36.6 17.2 9 269-277 563-571 (980)
201 KOG4673 Transcription factor T 79.0 74 0.0016 36.8 15.8 23 280-302 656-684 (961)
202 PF07106 TBPIP: Tat binding pr 78.9 12 0.00027 34.8 8.6 30 170-199 76-105 (169)
203 PF02403 Seryl_tRNA_N: Seryl-t 78.6 30 0.00065 29.6 10.3 38 164-201 27-64 (108)
204 PF07111 HCR: Alpha helical co 78.4 1.3E+02 0.0029 34.8 17.6 84 165-248 175-275 (739)
205 PF01920 Prefoldin_2: Prefoldi 78.4 13 0.00028 31.2 7.9 76 129-204 16-100 (106)
206 PF05701 WEMBL: Weak chloropla 77.8 1.1E+02 0.0024 33.9 16.8 32 217-248 409-440 (522)
207 PRK06798 fliD flagellar cappin 77.8 9.1 0.0002 41.4 8.3 52 181-235 380-431 (440)
208 PF05667 DUF812: Protein of un 77.7 60 0.0013 36.7 14.9 26 127-152 330-355 (594)
209 PF06160 EzrA: Septation ring 77.5 1.3E+02 0.0027 33.7 17.5 38 213-250 384-421 (560)
210 TIGR03007 pepcterm_ChnLen poly 77.2 79 0.0017 34.0 15.3 28 125-152 161-188 (498)
211 TIGR00634 recN DNA repair prot 76.9 92 0.002 34.6 16.0 92 166-262 308-402 (563)
212 PF03962 Mnd1: Mnd1 family; I 76.8 30 0.00065 33.3 10.7 29 171-199 67-95 (188)
213 PF07200 Mod_r: Modifier of ru 76.5 59 0.0013 29.4 14.2 68 133-207 8-75 (150)
214 COG0419 SbcC ATPase involved i 76.5 1.3E+02 0.0028 35.4 17.8 30 120-149 166-195 (908)
215 COG4026 Uncharacterized protei 76.4 73 0.0016 32.2 13.3 10 101-110 75-84 (290)
216 PF08826 DMPK_coil: DMPK coile 76.3 17 0.00037 29.2 7.4 42 165-206 17-58 (61)
217 cd07593 BAR_MUG137_fungi The B 76.3 52 0.0011 32.5 12.4 42 176-220 145-186 (215)
218 PF03961 DUF342: Protein of un 76.2 15 0.00032 39.6 9.4 75 173-248 334-408 (451)
219 COG3879 Uncharacterized protei 76.0 30 0.00066 35.0 10.8 50 227-278 137-186 (247)
220 PF10234 Cluap1: Clusterin-ass 75.9 65 0.0014 33.0 13.3 26 171-196 174-199 (267)
221 PF15254 CCDC14: Coiled-coil d 75.8 90 0.0019 36.5 15.5 78 171-251 467-544 (861)
222 PRK03947 prefoldin subunit alp 75.8 42 0.00091 30.2 10.9 44 164-207 92-135 (140)
223 KOG0971 Microtubule-associated 75.8 1.8E+02 0.004 34.8 22.1 18 286-303 439-456 (1243)
224 PF14197 Cep57_CLD_2: Centroso 75.5 43 0.00094 27.4 10.4 35 215-249 33-67 (69)
225 COG1730 GIM5 Predicted prefold 75.1 62 0.0014 30.2 11.9 84 124-207 19-135 (145)
226 PRK09343 prefoldin subunit bet 75.0 47 0.001 29.7 10.8 33 171-203 76-108 (121)
227 KOG4460 Nuclear pore complex, 74.9 1.6E+02 0.0034 33.5 17.5 18 115-132 553-570 (741)
228 PRK10929 putative mechanosensi 74.8 1.6E+02 0.0034 36.0 18.0 17 281-297 260-276 (1109)
229 PF03962 Mnd1: Mnd1 family; I 74.8 50 0.0011 31.8 11.7 27 173-199 103-129 (188)
230 PF09787 Golgin_A5: Golgin sub 74.2 1.4E+02 0.0031 32.8 16.6 12 282-293 385-396 (511)
231 COG4477 EzrA Negative regulato 74.1 84 0.0018 35.2 14.3 106 190-304 378-490 (570)
232 PRK03947 prefoldin subunit alp 73.9 67 0.0015 28.8 13.0 21 132-152 6-26 (140)
233 cd07666 BAR_SNX7 The Bin/Amphi 73.9 1E+02 0.0023 31.0 17.7 56 94-149 87-152 (243)
234 smart00787 Spc7 Spc7 kinetocho 73.8 1.2E+02 0.0026 31.6 17.8 33 216-248 219-251 (312)
235 PF10174 Cast: RIM-binding pro 73.5 1.9E+02 0.0042 33.9 17.8 8 178-185 341-348 (775)
236 KOG0976 Rho/Rac1-interacting s 73.5 1.3E+02 0.0028 35.6 15.9 50 98-148 228-282 (1265)
237 KOG4809 Rab6 GTPase-interactin 73.5 1.1E+02 0.0025 34.4 15.1 31 411-441 601-631 (654)
238 KOG1899 LAR transmembrane tyro 73.4 36 0.00078 38.8 11.4 24 184-207 171-194 (861)
239 PF11180 DUF2968: Protein of u 73.3 97 0.0021 30.4 14.6 58 171-228 124-181 (192)
240 KOG0993 Rab5 GTPase effector R 73.2 47 0.001 36.1 11.9 47 161-207 136-182 (542)
241 KOG4643 Uncharacterized coiled 72.8 1.7E+02 0.0038 35.3 17.0 16 128-143 411-426 (1195)
242 KOG0240 Kinesin (SMY1 subfamil 72.6 1.8E+02 0.0038 33.1 18.6 64 172-235 413-483 (607)
243 PRK10869 recombination and rep 72.4 1.7E+02 0.0036 32.7 17.6 78 181-263 318-398 (553)
244 KOG4572 Predicted DNA-binding 72.4 1.2E+02 0.0026 35.9 15.3 54 208-261 995-1048(1424)
245 PF10037 MRP-S27: Mitochondria 72.4 1E+02 0.0022 33.6 14.5 31 192-222 370-400 (429)
246 TIGR02473 flagell_FliJ flagell 72.3 68 0.0015 28.2 14.1 89 128-219 30-121 (141)
247 PF15294 Leu_zip: Leucine zipp 72.2 98 0.0021 32.0 13.5 79 164-242 130-228 (278)
248 PF09728 Taxilin: Myosin-like 72.2 1.3E+02 0.0028 31.3 15.8 23 339-361 260-282 (309)
249 TIGR03017 EpsF chain length de 72.1 1.4E+02 0.003 31.6 17.4 17 127-143 256-272 (444)
250 PF15070 GOLGA2L5: Putative go 72.1 1.1E+02 0.0024 34.9 15.2 14 351-364 421-434 (617)
251 TIGR01005 eps_transp_fam exopo 71.9 1.9E+02 0.0041 33.1 22.7 29 221-249 375-403 (754)
252 TIGR01005 eps_transp_fam exopo 71.7 1.2E+02 0.0027 34.6 15.8 19 276-294 420-439 (754)
253 PF13851 GAS: Growth-arrest sp 71.1 1E+02 0.0023 29.9 17.8 76 167-242 49-134 (201)
254 PRK06800 fliH flagellar assemb 71.1 59 0.0013 31.9 11.0 13 297-309 137-149 (228)
255 PF14662 CCDC155: Coiled-coil 71.0 1.1E+02 0.0024 30.0 17.0 43 164-206 86-128 (193)
256 PF12777 MT: Microtubule-bindi 70.8 16 0.00035 38.0 7.9 17 290-307 310-326 (344)
257 PRK13182 racA polar chromosome 70.8 39 0.00086 32.3 9.8 69 178-255 83-151 (175)
258 KOG1029 Endocytic adaptor prot 70.6 1.3E+02 0.0029 35.3 15.2 9 351-359 602-610 (1118)
259 PF05557 MAD: Mitotic checkpoi 70.4 6.7 0.00014 44.7 5.3 125 124-248 398-536 (722)
260 TIGR02449 conserved hypothetic 70.4 40 0.00086 27.5 8.3 32 171-202 5-36 (65)
261 COG1345 FliD Flagellar capping 70.3 16 0.00034 40.3 7.9 54 186-249 428-481 (483)
262 KOG2891 Surface glycoprotein [ 70.3 1.2E+02 0.0026 31.6 13.6 148 99-250 176-372 (445)
263 KOG0972 Huntingtin interacting 70.0 1.2E+02 0.0025 31.9 13.4 43 164-206 257-299 (384)
264 KOG4005 Transcription factor X 69.8 48 0.001 33.6 10.4 22 343-364 210-231 (292)
265 COG4717 Uncharacterized conser 69.7 2E+02 0.0043 34.3 16.5 98 173-270 774-879 (984)
266 KOG2391 Vacuolar sorting prote 69.7 43 0.00094 35.5 10.5 17 184-200 250-266 (365)
267 PF13514 AAA_27: AAA domain 69.7 1.2E+02 0.0025 36.6 15.6 23 280-302 1019-1041(1111)
268 KOG2129 Uncharacterized conser 69.6 39 0.00084 36.8 10.3 65 127-191 210-278 (552)
269 KOG1103 Predicted coiled-coil 69.5 90 0.0019 33.5 12.8 35 175-209 240-274 (561)
270 PF05010 TACC: Transforming ac 69.5 1.2E+02 0.0026 29.9 17.6 42 170-211 73-114 (207)
271 PRK15422 septal ring assembly 69.4 70 0.0015 27.2 11.0 18 181-198 26-43 (79)
272 PLN02678 seryl-tRNA synthetase 69.4 44 0.00095 36.5 11.0 91 164-263 31-121 (448)
273 PF15290 Syntaphilin: Golgi-lo 69.3 1.5E+02 0.0032 30.9 13.9 65 181-254 118-182 (305)
274 TIGR03319 YmdA_YtgF conserved 69.3 87 0.0019 34.8 13.4 39 177-215 91-129 (514)
275 PF05911 DUF869: Plant protein 69.2 78 0.0017 37.0 13.4 17 286-302 734-750 (769)
276 KOG2077 JNK/SAPK-associated pr 69.2 74 0.0016 36.1 12.6 123 103-232 274-423 (832)
277 PF05911 DUF869: Plant protein 68.9 2E+02 0.0043 33.8 16.6 37 215-251 148-184 (769)
278 PF05529 Bap31: B-cell recepto 68.8 31 0.00067 32.7 8.7 34 173-206 154-187 (192)
279 PF15619 Lebercilin: Ciliary p 68.7 1.2E+02 0.0026 29.5 17.6 60 177-239 122-181 (194)
280 KOG3800 Predicted E3 ubiquitin 68.7 27 0.00058 36.2 8.6 16 113-128 22-37 (300)
281 PF08172 CASP_C: CASP C termin 68.6 27 0.00058 35.2 8.6 38 216-253 87-124 (248)
282 KOG4302 Microtubule-associated 68.6 1.5E+02 0.0032 34.2 15.1 63 171-233 101-178 (660)
283 PRK07737 fliD flagellar cappin 68.4 21 0.00045 39.3 8.4 48 184-234 445-492 (501)
284 PF10481 CENP-F_N: Cenp-F N-te 68.4 90 0.0019 32.3 12.1 21 229-249 95-115 (307)
285 KOG0971 Microtubule-associated 68.3 1E+02 0.0022 36.8 13.8 38 171-208 401-438 (1243)
286 PF09738 DUF2051: Double stran 68.2 1.3E+02 0.0028 31.3 13.6 22 344-365 222-243 (302)
287 KOG4460 Nuclear pore complex, 68.1 1.5E+02 0.0033 33.6 14.6 118 121-247 566-687 (741)
288 KOG4674 Uncharacterized conser 68.1 1.6E+02 0.0034 37.7 16.2 40 111-151 45-85 (1822)
289 PF03980 Nnf1: Nnf1 ; InterPr 68.0 78 0.0017 27.3 10.4 77 125-201 14-108 (109)
290 PRK11578 macrolide transporter 67.7 1E+02 0.0023 31.9 13.1 43 228-271 157-199 (370)
291 cd00890 Prefoldin Prefoldin is 67.6 66 0.0014 27.9 10.0 35 169-203 90-124 (129)
292 TIGR03017 EpsF chain length de 67.6 1.6E+02 0.0034 31.1 14.6 30 124-153 170-199 (444)
293 PRK06664 fliD flagellar hook-a 67.5 17 0.00038 41.4 7.8 51 182-235 602-652 (661)
294 PF06248 Zw10: Centromere/kine 67.4 1.2E+02 0.0026 33.8 14.3 32 121-152 10-46 (593)
295 PF05278 PEARLI-4: Arabidopsis 67.2 1.6E+02 0.0034 30.4 19.1 6 56-61 53-58 (269)
296 PF10805 DUF2730: Protein of u 66.9 42 0.00091 29.4 8.5 32 217-248 67-98 (106)
297 PF02841 GBP_C: Guanylate-bind 66.9 1.2E+02 0.0026 30.9 13.1 110 123-235 188-297 (297)
298 PF02388 FemAB: FemAB family; 66.7 18 0.00039 38.5 7.4 41 224-264 275-315 (406)
299 PF10779 XhlA: Haemolysin XhlA 66.6 59 0.0013 26.3 8.8 52 163-214 3-54 (71)
300 KOG1003 Actin filament-coating 66.5 1.4E+02 0.003 29.5 16.5 71 180-250 102-172 (205)
301 PF09304 Cortex-I_coil: Cortex 66.5 98 0.0021 27.7 13.4 18 182-199 46-63 (107)
302 COG3206 GumC Uncharacterized p 66.4 1.5E+02 0.0033 31.8 14.4 113 126-244 286-402 (458)
303 PF13514 AAA_27: AAA domain 66.3 2.9E+02 0.0063 33.4 17.9 27 127-153 745-771 (1111)
304 cd00584 Prefoldin_alpha Prefol 66.0 88 0.0019 27.6 10.6 28 125-152 13-40 (129)
305 PF05529 Bap31: B-cell recepto 65.8 45 0.00098 31.6 9.2 22 220-241 166-187 (192)
306 COG4477 EzrA Negative regulato 65.7 2.4E+02 0.0051 31.9 16.6 56 94-149 253-309 (570)
307 PRK13729 conjugal transfer pil 65.5 21 0.00045 39.3 7.5 14 313-326 211-224 (475)
308 PF15397 DUF4618: Domain of un 65.5 1.7E+02 0.0036 30.0 16.9 43 164-206 65-107 (258)
309 PF15290 Syntaphilin: Golgi-lo 65.4 1.2E+02 0.0027 31.4 12.5 85 159-245 54-140 (305)
310 PF09763 Sec3_C: Exocyst compl 65.2 1.1E+02 0.0023 35.0 13.5 111 123-253 3-113 (701)
311 PF14817 HAUS5: HAUS augmin-li 65.1 1.5E+02 0.0033 33.9 14.5 49 175-223 81-129 (632)
312 PF15188 CCDC-167: Coiled-coil 65.1 24 0.00051 30.3 6.3 24 229-252 43-66 (85)
313 PF05130 FlgN: FlgN protein; 64.8 89 0.0019 26.9 10.2 60 136-197 9-68 (143)
314 PF04012 PspA_IM30: PspA/IM30 64.8 1.4E+02 0.0029 28.8 14.5 41 201-241 98-138 (221)
315 TIGR00634 recN DNA repair prot 64.8 1.8E+02 0.0038 32.4 14.8 10 383-392 513-522 (563)
316 KOG0018 Structural maintenance 64.7 3E+02 0.0065 33.5 16.9 12 402-413 590-601 (1141)
317 PRK00106 hypothetical protein; 64.7 2.4E+02 0.0053 31.7 18.3 12 178-189 106-117 (535)
318 KOG0163 Myosin class VI heavy 64.7 2.1E+02 0.0045 33.9 15.1 11 142-152 903-913 (1259)
319 KOG4571 Activating transcripti 64.7 25 0.00055 36.3 7.6 40 172-211 247-286 (294)
320 PF07061 Swi5: Swi5; InterPro 64.6 25 0.00054 29.8 6.4 10 212-221 43-52 (83)
321 KOG4302 Microtubule-associated 64.6 54 0.0012 37.6 10.8 15 121-135 35-49 (660)
322 PF12999 PRKCSH-like: Glucosid 64.6 24 0.00053 34.0 7.0 15 111-125 96-110 (176)
323 KOG3119 Basic region leucine z 64.4 26 0.00055 35.6 7.6 54 165-218 207-260 (269)
324 KOG1853 LIS1-interacting prote 64.3 1.8E+02 0.0039 30.0 17.0 24 178-201 96-119 (333)
325 COG3074 Uncharacterized protei 64.3 85 0.0018 26.3 10.7 27 181-207 26-52 (79)
326 PF12761 End3: Actin cytoskele 64.2 1.3E+02 0.0027 29.7 11.9 22 224-245 162-183 (195)
327 PF14257 DUF4349: Domain of un 63.8 1.4E+02 0.0031 29.5 12.7 63 226-297 166-228 (262)
328 KOG0288 WD40 repeat protein Ti 63.1 1.8E+02 0.0038 31.9 13.6 15 292-306 206-220 (459)
329 PRK08724 fliD flagellar cappin 63.0 36 0.00078 39.0 9.1 49 184-235 621-669 (673)
330 PF14257 DUF4349: Domain of un 62.8 49 0.0011 32.8 9.2 51 99-150 105-157 (262)
331 PF02050 FliJ: Flagellar FliJ 62.8 88 0.0019 25.9 13.9 85 127-215 14-101 (123)
332 PF09744 Jnk-SapK_ap_N: JNK_SA 62.8 1.4E+02 0.003 28.2 13.2 55 169-223 85-139 (158)
333 KOG3091 Nuclear pore complex, 62.6 1.1E+02 0.0024 33.9 12.3 17 46-62 180-196 (508)
334 PRK05431 seryl-tRNA synthetase 62.4 69 0.0015 34.5 10.8 35 166-200 28-62 (425)
335 PF10174 Cast: RIM-binding pro 62.4 3.2E+02 0.0069 32.2 17.5 38 212-249 469-506 (775)
336 PF09304 Cortex-I_coil: Cortex 62.1 1.2E+02 0.0026 27.2 15.3 20 173-192 51-70 (107)
337 KOG0946 ER-Golgi vesicle-tethe 62.0 1.3E+02 0.0028 35.5 13.1 55 171-225 662-716 (970)
338 TIGR00414 serS seryl-tRNA synt 62.0 75 0.0016 34.2 11.0 35 165-199 29-63 (418)
339 KOG1760 Molecular chaperone Pr 62.0 1.1E+02 0.0023 28.3 10.1 75 128-202 33-117 (131)
340 PF11365 DUF3166: Protein of u 61.9 61 0.0013 28.4 8.4 89 161-252 3-92 (96)
341 PF07926 TPR_MLP1_2: TPR/MLP1/ 61.5 1.2E+02 0.0027 27.2 17.0 69 169-240 62-130 (132)
342 PRK10929 putative mechanosensi 61.3 3.8E+02 0.0083 32.8 17.5 39 221-259 285-323 (1109)
343 PF02996 Prefoldin: Prefoldin 61.1 91 0.002 26.8 9.6 80 127-206 5-117 (120)
344 PF09403 FadA: Adhesion protei 61.1 1.3E+02 0.0029 27.4 11.9 25 185-209 57-81 (126)
345 KOG0963 Transcription factor/C 61.1 2.9E+02 0.0063 31.6 15.4 30 123-152 237-269 (629)
346 KOG3091 Nuclear pore complex, 60.8 1.9E+02 0.0042 32.2 13.7 19 124-142 337-355 (508)
347 KOG4001 Axonemal dynein light 60.8 1.2E+02 0.0026 30.2 11.1 33 171-203 183-215 (259)
348 PF07058 Myosin_HC-like: Myosi 60.6 79 0.0017 33.2 10.2 19 127-145 2-20 (351)
349 KOG4677 Golgi integral membran 60.6 1.4E+02 0.003 33.0 12.4 103 165-277 308-422 (554)
350 TIGR02977 phageshock_pspA phag 60.4 1.7E+02 0.0037 28.5 14.6 51 194-244 99-149 (219)
351 PRK10869 recombination and rep 60.4 2.3E+02 0.0049 31.7 14.7 11 382-392 502-512 (553)
352 KOG0946 ER-Golgi vesicle-tethe 60.3 71 0.0015 37.5 10.7 73 177-249 647-719 (970)
353 PRK13729 conjugal transfer pil 60.1 24 0.00051 38.9 6.8 7 232-238 114-120 (475)
354 PRK00888 ftsB cell division pr 60.0 30 0.00064 30.4 6.3 31 170-200 31-61 (105)
355 PF10224 DUF2205: Predicted co 59.8 74 0.0016 27.0 8.3 42 175-217 18-59 (80)
356 KOG0962 DNA repair protein RAD 59.2 4E+02 0.0086 33.2 17.0 27 162-188 822-848 (1294)
357 PF02403 Seryl_tRNA_N: Seryl-t 59.2 92 0.002 26.6 9.2 16 130-145 34-49 (108)
358 TIGR02971 heterocyst_DevB ABC 59.0 2.1E+02 0.0044 28.9 14.5 40 228-276 185-224 (327)
359 KOG2991 Splicing regulator [RN 59.0 2.2E+02 0.0049 29.4 17.3 22 225-246 180-201 (330)
360 PF09731 Mitofilin: Mitochondr 58.9 2.9E+02 0.0063 30.6 19.4 11 98-108 225-235 (582)
361 PF14712 Snapin_Pallidin: Snap 58.9 1.1E+02 0.0023 25.5 12.3 77 172-249 13-91 (92)
362 COG3883 Uncharacterized protei 58.8 2.2E+02 0.0048 29.2 18.1 27 127-153 33-59 (265)
363 COG1340 Uncharacterized archae 58.7 2.3E+02 0.0051 29.5 16.5 76 167-242 166-241 (294)
364 PF06632 XRCC4: DNA double-str 58.5 1.7E+02 0.0036 31.1 12.5 63 173-235 144-207 (342)
365 TIGR03794 NHPM_micro_HlyD NHPM 58.3 2.5E+02 0.0054 29.7 17.9 48 229-277 227-274 (421)
366 KOG0978 E3 ubiquitin ligase in 58.1 3.6E+02 0.0077 31.4 18.1 74 178-251 543-616 (698)
367 KOG4196 bZIP transcription fac 57.9 41 0.00088 31.1 6.8 32 171-202 79-110 (135)
368 KOG0994 Extracellular matrix g 57.8 4.6E+02 0.01 32.6 16.8 16 94-109 1520-1535(1758)
369 PF09731 Mitofilin: Mitochondr 57.7 3E+02 0.0065 30.5 17.1 14 125-138 251-264 (582)
370 PF09798 LCD1: DNA damage chec 57.7 57 0.0012 37.4 9.5 59 178-242 2-60 (654)
371 KOG0962 DNA repair protein RAD 57.5 3.1E+02 0.0066 34.1 15.7 22 246-267 948-969 (1294)
372 KOG0249 LAR-interacting protei 57.1 2.5E+02 0.0053 32.9 14.1 38 170-207 220-257 (916)
373 PF14817 HAUS5: HAUS augmin-li 56.9 3.5E+02 0.0075 31.1 15.5 22 402-423 576-597 (632)
374 KOG3564 GTPase-activating prot 56.8 83 0.0018 35.0 10.1 31 403-433 521-553 (604)
375 PF11684 DUF3280: Protein of u 56.7 8.8 0.00019 35.5 2.5 28 388-415 110-137 (140)
376 KOG3758 Uncharacterized conser 56.5 3.5E+02 0.0075 31.1 15.0 92 102-203 16-108 (655)
377 COG4717 Uncharacterized conser 56.5 3.5E+02 0.0077 32.3 15.4 64 260-326 804-880 (984)
378 PF01496 V_ATPase_I: V-type AT 56.5 7.9 0.00017 44.3 2.7 24 237-260 154-177 (759)
379 PF07716 bZIP_2: Basic region 56.2 42 0.00092 25.6 5.9 32 171-202 23-54 (54)
380 PF09403 FadA: Adhesion protei 56.0 1.1E+02 0.0023 28.1 9.3 21 227-247 87-107 (126)
381 PRK10636 putative ABC transpor 55.8 70 0.0015 36.1 9.9 23 185-207 561-583 (638)
382 PF13166 AAA_13: AAA domain 55.7 3.5E+02 0.0075 30.5 18.2 25 275-304 494-518 (712)
383 PF07303 Occludin_ELL: Occludi 55.4 74 0.0016 27.8 7.9 47 174-221 23-69 (101)
384 PRK05771 V-type ATP synthase s 55.1 77 0.0017 35.8 10.1 18 135-152 46-63 (646)
385 PF12777 MT: Microtubule-bindi 54.8 2E+02 0.0043 30.0 12.4 18 402-419 293-310 (344)
386 KOG4593 Mitotic checkpoint pro 54.5 4E+02 0.0088 31.0 15.8 117 127-243 421-538 (716)
387 cd07611 BAR_Amphiphysin_I_II T 54.5 2.3E+02 0.005 28.1 14.3 108 121-228 75-206 (211)
388 PLN02320 seryl-tRNA synthetase 54.3 98 0.0021 34.4 10.4 33 166-198 93-125 (502)
389 PF10211 Ax_dynein_light: Axon 54.3 2.1E+02 0.0045 27.6 15.4 55 169-223 123-178 (189)
390 TIGR01730 RND_mfp RND family e 54.3 86 0.0019 31.0 9.3 18 232-249 112-129 (322)
391 PRK15422 septal ring assembly 54.0 1.4E+02 0.003 25.4 10.8 6 231-236 69-74 (79)
392 PF03148 Tektin: Tektin family 53.6 3E+02 0.0066 29.2 16.8 29 223-251 325-353 (384)
393 COG4985 ABC-type phosphate tra 53.5 1E+02 0.0023 31.3 9.5 25 178-202 219-243 (289)
394 KOG2196 Nuclear porin [Nuclear 53.4 2.6E+02 0.0057 28.5 15.5 40 165-204 119-158 (254)
395 KOG2264 Exostosin EXT1L [Signa 53.4 1.3E+02 0.0027 34.4 10.9 42 166-207 93-134 (907)
396 KOG4603 TBP-1 interacting prot 53.4 2.3E+02 0.0049 27.7 11.7 90 166-257 79-178 (201)
397 KOG3859 Septins (P-loop GTPase 53.3 1.4E+02 0.0029 31.6 10.5 11 15-25 56-66 (406)
398 PF10267 Tmemb_cc2: Predicted 53.1 2.8E+02 0.006 30.1 13.3 19 287-305 344-362 (395)
399 PF14723 SSFA2_C: Sperm-specif 53.1 1.1E+02 0.0024 29.6 9.2 20 133-152 106-125 (179)
400 PF05377 FlaC_arch: Flagella a 53.0 63 0.0014 25.7 6.3 36 170-205 4-39 (55)
401 PF07889 DUF1664: Protein of u 52.8 1.9E+02 0.004 26.5 11.7 56 194-249 68-123 (126)
402 PF12761 End3: Actin cytoskele 52.8 1.1E+02 0.0023 30.1 9.3 33 217-249 162-194 (195)
403 PF06120 Phage_HK97_TLTM: Tail 52.7 2.8E+02 0.006 29.0 12.8 28 123-150 86-113 (301)
404 KOG0796 Spliceosome subunit [R 52.6 2.6E+02 0.0057 29.5 12.6 32 121-152 56-89 (319)
405 PRK10698 phage shock protein P 52.4 2.4E+02 0.0053 27.8 14.5 20 122-141 28-47 (222)
406 PF06785 UPF0242: Uncharacteri 52.4 3.2E+02 0.007 29.2 15.5 13 95-107 46-58 (401)
407 PF08286 Spc24: Spc24 subunit 52.2 4.4 9.6E-05 35.9 -0.2 41 170-210 3-43 (118)
408 PRK10636 putative ABC transpor 51.9 95 0.0021 35.0 10.1 27 177-203 560-586 (638)
409 KOG2196 Nuclear porin [Nuclear 51.8 2.8E+02 0.0061 28.3 14.4 28 224-251 221-248 (254)
410 PF07851 TMPIT: TMPIT-like pro 51.5 2E+02 0.0043 30.4 11.7 26 128-153 7-32 (330)
411 TIGR03545 conserved hypothetic 51.4 2.3E+02 0.0049 32.0 12.8 14 140-153 192-205 (555)
412 PF04977 DivIC: Septum formati 51.3 48 0.001 26.3 5.8 29 171-199 22-50 (80)
413 PLN02372 violaxanthin de-epoxi 51.3 2E+02 0.0044 31.4 11.8 81 161-242 367-452 (455)
414 PRK05689 fliJ flagellar biosyn 51.0 1.9E+02 0.004 26.0 15.4 90 130-222 35-127 (147)
415 PRK14160 heat shock protein Gr 50.6 2.6E+02 0.0057 27.7 12.1 42 180-221 54-95 (211)
416 KOG0249 LAR-interacting protei 50.4 2.5E+02 0.0053 33.0 12.7 39 173-211 216-254 (916)
417 KOG3850 Predicted membrane pro 50.3 3.7E+02 0.008 29.3 13.9 86 162-247 263-349 (455)
418 TIGR01010 BexC_CtrB_KpsE polys 49.8 2.4E+02 0.0052 29.2 12.1 121 122-242 174-305 (362)
419 KOG0742 AAA+-type ATPase [Post 49.7 4.1E+02 0.0089 29.6 22.5 37 117-153 92-128 (630)
420 COG1340 Uncharacterized archae 49.5 3.3E+02 0.0071 28.5 19.5 18 174-191 132-149 (294)
421 PF14362 DUF4407: Domain of un 49.3 2.3E+02 0.0049 28.7 11.5 16 222-237 196-211 (301)
422 PRK11578 macrolide transporter 49.1 2.5E+02 0.0054 29.1 12.1 27 223-249 159-185 (370)
423 KOG4438 Centromere-associated 49.1 3.5E+02 0.0075 29.8 13.1 29 167-195 174-202 (446)
424 PF05615 THOC7: Tho complex su 49.1 2E+02 0.0043 25.8 11.0 68 127-200 41-108 (139)
425 PF15372 DUF4600: Domain of un 49.0 2.2E+02 0.0048 26.3 12.4 38 176-216 54-91 (129)
426 PF10212 TTKRSYEDQ: Predicted 49.0 4.3E+02 0.0094 29.7 15.9 26 124-149 412-437 (518)
427 KOG3564 GTPase-activating prot 48.7 2.8E+02 0.006 31.1 12.4 80 121-206 17-96 (604)
428 smart00338 BRLZ basic region l 48.6 74 0.0016 25.0 6.3 29 178-206 31-59 (65)
429 PF12126 DUF3583: Protein of u 48.6 3.5E+02 0.0075 28.5 12.8 36 171-206 51-87 (324)
430 PF00170 bZIP_1: bZIP transcri 48.4 1E+02 0.0022 24.1 7.1 29 178-206 31-59 (64)
431 cd07673 F-BAR_FCHO2 The F-BAR 48.0 3.1E+02 0.0067 27.7 17.0 17 269-285 251-267 (269)
432 PF13166 AAA_13: AAA domain 48.0 4.5E+02 0.0098 29.6 19.5 10 128-137 332-341 (712)
433 PF02388 FemAB: FemAB family; 47.3 1.3E+02 0.0027 32.2 9.8 16 137-152 213-228 (406)
434 PF01519 DUF16: Protein of unk 46.9 2.1E+02 0.0045 25.5 9.3 17 232-248 84-100 (102)
435 PF04977 DivIC: Septum formati 46.7 48 0.001 26.3 5.1 31 176-206 20-50 (80)
436 KOG4796 RNA polymerase II elon 46.5 1.9E+02 0.0041 32.7 10.9 46 178-223 520-566 (604)
437 TIGR00293 prefoldin, archaeal 46.5 2E+02 0.0044 25.2 10.7 37 165-201 85-121 (126)
438 PRK11281 hypothetical protein; 46.5 2.2E+02 0.0048 34.8 12.4 78 178-255 126-211 (1113)
439 PF07352 Phage_Mu_Gam: Bacteri 46.4 1.4E+02 0.003 27.4 8.7 14 262-276 72-85 (149)
440 KOG0239 Kinesin (KAR3 subfamil 46.3 1.8E+02 0.004 33.4 11.3 30 169-198 178-207 (670)
441 PF13747 DUF4164: Domain of un 46.0 1.9E+02 0.0041 24.7 11.6 29 178-206 37-65 (89)
442 PF03245 Phage_lysis: Bacterio 45.7 1.7E+02 0.0036 26.4 8.9 38 189-226 16-53 (125)
443 PF04799 Fzo_mitofusin: fzo-li 45.6 2E+02 0.0044 27.7 9.8 19 191-209 124-142 (171)
444 PF15188 CCDC-167: Coiled-coil 45.5 1.2E+02 0.0026 26.1 7.4 24 131-154 4-27 (85)
445 PF09340 NuA4: Histone acetylt 45.3 49 0.0011 27.7 5.0 33 180-215 2-34 (80)
446 PF04518 Effector_1: Effector 45.2 1.7E+02 0.0036 31.6 10.1 91 165-262 199-294 (379)
447 PF01920 Prefoldin_2: Prefoldi 45.1 1.8E+02 0.0039 24.2 10.9 21 228-248 75-95 (106)
448 PF14992 TMCO5: TMCO5 family 45.0 3.8E+02 0.0082 27.8 12.4 44 106-151 46-89 (280)
449 PRK07720 fliJ flagellar biosyn 44.9 2.4E+02 0.0051 25.4 14.8 91 128-221 33-126 (146)
450 KOG0018 Structural maintenance 44.7 5.5E+02 0.012 31.4 14.8 30 122-151 729-763 (1141)
451 KOG2129 Uncharacterized conser 44.5 4.8E+02 0.01 28.9 16.8 78 185-262 258-344 (552)
452 PF10458 Val_tRNA-synt_C: Valy 44.5 1.3E+02 0.0029 23.8 7.2 24 130-153 2-25 (66)
453 COG0172 SerS Seryl-tRNA synthe 44.4 3E+02 0.0064 30.2 12.0 92 165-264 28-119 (429)
454 KOG0978 E3 ubiquitin ligase in 44.4 5.8E+02 0.012 29.8 17.6 82 172-253 544-625 (698)
455 PRK10361 DNA recombination pro 44.3 4.9E+02 0.011 29.0 14.0 30 198-227 96-125 (475)
456 PF05557 MAD: Mitotic checkpoi 44.1 7.5 0.00016 44.3 0.0 22 130-151 310-331 (722)
457 PF11068 YlqD: YlqD protein; 43.9 2.6E+02 0.0056 25.7 11.1 26 178-203 25-50 (131)
458 KOG3595 Dyneins, heavy chain [ 43.9 6.9E+02 0.015 31.3 16.4 28 125-152 700-727 (1395)
459 PF07195 FliD_C: Flagellar hoo 43.9 79 0.0017 31.0 7.1 45 178-225 191-235 (239)
460 PF02994 Transposase_22: L1 tr 43.8 71 0.0015 33.9 7.2 121 129-253 59-193 (370)
461 PF05622 HOOK: HOOK protein; 43.7 7.7 0.00017 44.2 0.0 24 128-151 277-303 (713)
462 PF10205 KLRAQ: Predicted coil 43.6 2.4E+02 0.0051 25.1 11.5 12 170-181 9-20 (102)
463 PLN02678 seryl-tRNA synthetase 43.5 1.9E+02 0.0041 31.7 10.4 25 349-385 301-325 (448)
464 PRK12765 flagellar capping pro 43.3 1.2E+02 0.0025 34.4 9.1 57 182-241 534-590 (595)
465 PF01486 K-box: K-box region; 43.2 2.1E+02 0.0045 24.4 11.0 29 127-155 14-42 (100)
466 COG3883 Uncharacterized protei 43.0 3.9E+02 0.0085 27.5 18.9 36 172-207 161-196 (265)
467 KOG4787 Uncharacterized conser 43.0 2.7E+02 0.0059 31.9 11.5 71 128-199 462-541 (852)
468 PF15369 KIAA1328: Uncharacter 43.0 3.7E+02 0.0081 28.5 11.9 105 162-266 11-119 (328)
469 PF05008 V-SNARE: Vesicle tran 42.8 1.7E+02 0.0036 23.5 7.8 28 180-207 25-52 (79)
470 PRK14127 cell division protein 42.8 94 0.002 27.8 6.6 53 162-214 33-102 (109)
471 PHA03161 hypothetical protein; 42.7 90 0.002 29.5 6.8 15 267-281 132-146 (150)
472 PF07851 TMPIT: TMPIT-like pro 42.3 3E+02 0.0065 29.2 11.3 26 163-188 8-33 (330)
473 PRK10722 hypothetical protein; 42.2 97 0.0021 31.5 7.4 40 88-128 47-90 (247)
474 PF14235 DUF4337: Domain of un 42.2 1.7E+02 0.0037 27.5 8.7 49 175-223 68-116 (157)
475 PRK05431 seryl-tRNA synthetase 42.2 1.9E+02 0.0041 31.2 10.2 28 347-386 292-319 (425)
476 PF13815 Dzip-like_N: Iguana/D 42.2 82 0.0018 27.9 6.3 15 185-199 92-106 (118)
477 PF14932 HAUS-augmin3: HAUS au 42.2 2.6E+02 0.0056 28.0 10.5 78 127-206 70-147 (256)
478 PF12072 DUF3552: Domain of un 42.1 3.3E+02 0.007 26.3 14.1 88 162-252 60-147 (201)
479 PF15294 Leu_zip: Leucine zipp 42.0 4.2E+02 0.009 27.5 13.2 28 128-155 128-155 (278)
480 PF12329 TMF_DNA_bd: TATA elem 42.0 2E+02 0.0043 23.7 10.7 21 178-198 38-58 (74)
481 KOG1937 Uncharacterized conser 41.4 5.4E+02 0.012 28.6 14.3 136 111-248 219-378 (521)
482 TIGR03545 conserved hypothetic 41.3 4.9E+02 0.011 29.4 13.5 96 123-220 173-270 (555)
483 PF12018 DUF3508: Domain of un 41.3 4E+02 0.0087 27.1 12.5 84 125-208 9-94 (281)
484 COG3206 GumC Uncharacterized p 41.2 4.8E+02 0.01 28.0 15.6 131 123-253 237-373 (458)
485 COG4467 Regulator of replicati 41.2 54 0.0012 29.4 4.8 87 175-267 3-95 (114)
486 KOG0240 Kinesin (SMY1 subfamil 41.0 6E+02 0.013 29.0 14.7 129 122-252 397-526 (607)
487 PF08172 CASP_C: CASP C termin 41.0 1.4E+02 0.0029 30.2 8.3 51 171-221 84-134 (248)
488 PF09738 DUF2051: Double stran 40.9 4.4E+02 0.0096 27.5 12.6 82 168-249 79-160 (302)
489 KOG3501 Molecular chaperone Pr 40.8 2.7E+02 0.0059 25.0 11.7 80 123-210 32-111 (114)
490 KOG1265 Phospholipase C [Lipid 40.6 7.5E+02 0.016 30.0 15.5 125 123-247 1039-1164(1189)
491 PF07407 Seadorna_VP6: Seadorn 40.3 1.4E+02 0.0031 31.7 8.5 64 181-256 33-96 (420)
492 PF07462 MSP1_C: Merozoite sur 40.2 1.8E+02 0.004 32.7 9.7 109 119-260 8-124 (574)
493 PF04899 MbeD_MobD: MbeD/MobD 40.1 2.1E+02 0.0046 23.6 8.7 56 196-251 9-64 (70)
494 TIGR02338 gimC_beta prefoldin, 40.1 2.5E+02 0.0054 24.4 11.7 84 167-250 4-102 (110)
495 TIGR00414 serS seryl-tRNA synt 40.0 1.5E+02 0.0032 32.0 8.9 62 163-224 41-106 (418)
496 PF11488 Lge1: Transcriptional 39.7 2.2E+02 0.0048 23.6 8.5 59 186-248 19-77 (80)
497 smart00502 BBC B-Box C-termina 39.6 2.3E+02 0.005 23.8 13.2 84 162-251 10-94 (127)
498 PRK00888 ftsB cell division pr 39.1 69 0.0015 28.1 5.2 32 176-207 30-61 (105)
499 PRK14148 heat shock protein Gr 39.1 3.8E+02 0.0083 26.2 10.8 83 152-236 26-108 (195)
500 PF13600 DUF4140: N-terminal d 38.9 68 0.0015 27.3 5.1 35 173-207 70-104 (104)
No 1
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=8.3e-105 Score=812.63 Aligned_cols=411 Identities=53% Similarity=0.875 Sum_probs=374.8
Q ss_pred CCccccccccccccccccccccccCCCC-CCCCCCCCCCCCCCCCccccCCCCCCCceEEEecCCCCCCCCCCCCCCCCC
Q 012379 3 GSSIHASNSVLGSTRMDNSFVVLPKQRP-QSHGVPPRPRGSSAQSEASQSGKAMDESFVVIYKSESASDGGGPHIPPPEG 81 (465)
Q Consensus 3 ~~~~~~~~~~~~~~~~d~s~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~es~v~l~~~~~~~~~~~~~~~~~~~ 81 (465)
..++|+..++.++.+||.+++|+|.+.+ |..+.|++++++.. ++.. ++.++.++||+.+...+..+....+-.....
T Consensus 22 ~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~t~~~~a~~-~~~~-~~~~~~~~~~~~~~~~p~r~~~~~~~~~~~~ 99 (447)
T KOG2751|consen 22 LQPIHLDNSLLGSDRMDISELVLPLHKPPQSQGGPTRPRGASS-GDAT-SGKTPQESSVVVYFSPPVRDSDTEHNLSFEL 99 (447)
T ss_pred cchhhhhhhhccccccchhhccCCCCCCccccCCCccCccccC-cccc-CCcchhhccceecccCccccccccccccccc
Confidence 4679999999999999999999999865 99999999988877 5555 8888899999988776654443333333333
Q ss_pred CCCCCCCCCCCccchhHHHHHHHHHhhcCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCH
Q 012379 82 GTNGPMQPNNSGFHSTITVLKRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSE 161 (465)
Q Consensus 82 ~~~~~~~~~~~~ls~~i~~l~~lFdIlSs~s~iDhPLC~eC~d~Lle~L~~qle~~~~E~d~Y~~fL~~L~~~~~~~~~e 161 (465)
+-.+....+.+++++++++++++|+|||+|++||||+|.||++.|++.|+++++.+++|+++|++|+++|+++... .++
T Consensus 100 ~~~~~~~~~~~~~s~~~~~~~~~f~i~~~qt~~d~PlC~eC~d~l~~~ld~e~~~~~~e~~~Y~~~l~~Le~~~~~-~~~ 178 (447)
T KOG2751|consen 100 GENGSDGSNTKTLSATINVLTRLFDILSSQTQVDHPLCEECMDVLLNKLDKEVEDAEDEVDTYKACLQRLEQQNQD-VSE 178 (447)
T ss_pred ccccchhhhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcc-cch
Confidence 3333445677889999999999999999999999999999999999999999999999999999999999877543 478
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 162 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVS 241 (465)
Q Consensus 162 e~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~ 241 (465)
+++.+|+++++.||++|.++|++++++.++++.++.+++.+..++.++|.+||++||.+++++.+++++++||++|++++
T Consensus 179 ~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~~~~~q~~~~~del~Sle~q~~~s 258 (447)
T KOG2751|consen 179 EDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWREYNNFQRQLIEHQDELDSLEAQIEYS 258 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccCCCceeeeecCCeeeeccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecCCC
Q 012379 242 QAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYFRPKFPYRIKIIPMGSY 321 (465)
Q Consensus 242 ~~~LdkL~ktNV~Nd~F~I~hdG~fGTINGlRLGrlp~~~V~W~EINAAwGQ~~LLL~tla~~l~~~f~~~ykLvPmGS~ 321 (465)
+.||++|++|||||.+|||||+|+|||||||||||+|.+||+|+||||||||+||||++|++++|++|. +|+||||||+
T Consensus 259 ~~qldkL~ktNv~n~~F~I~~~G~fgtIN~FRLG~lp~~pVew~EINAA~GQ~vLLL~~l~~kig~~~~-~y~lvp~Gsh 337 (447)
T KOG2751|consen 259 QAQLDKLRKTNVFNATFHIWHDGEFGTINNFRLGRLPSVPVEWDEINAAWGQTVLLLHTLANKIGLNFV-RYRLVPMGSH 337 (447)
T ss_pred HHHHHHHHhhhhhhheeeEeecccccccccceeccccCCCcCHHHHHHHhhhHHHHHHHHHHhcCcccc-eeeeecccch
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred ceeeccCC---ceeeccc--CCCCccccchhHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCceeeeCCcccee---
Q 012379 322 PRIMDSNN---NTYELFG--PVNLFWSTRYDKAMTLFLSCLKDFAEFANSKDQENNIPPDKCFKLPYKIENDKVENY--- 393 (465)
Q Consensus 322 SkI~~~~~---~~~~Lyg--~~~lf~~~kFD~AM~afL~cl~q~~~~~~~~d~~~~~~~~~~~~LPY~I~kdkI~g~--- 393 (465)
|+|++... ..+++|+ +.+|||++|||+||+|||+||+||+++++++++ .+.|||.|++|+|+|.
T Consensus 338 SyI~~~~~~~~~el~l~~sgg~~~f~~tkfD~amvafLd~L~qf~~e~~~k~~--------~~~lPy~ie~d~i~d~~~~ 409 (447)
T KOG2751|consen 338 SYIKKRMVNLPYELPLFQSGGLKFFWSTKFDKAMVAFLDCLKQFADELEKKDT--------SFNLPYDIEKDKLNDPSSS 409 (447)
T ss_pred hHHHHhccCCCccchhhcCCCceeeeccccCHHHHHHHHHHHHHHHHHHhcCc--------ccCCcchhhcccccCCccc
Confidence 99987543 4567774 458999999999999999999999999998864 6999999999999986
Q ss_pred -eEEecCCCCchhhHHHHHHHhhHHHHHHHHhh
Q 012379 394 -SITQSFNKQENWTKALKYTLCNLKWALFWFVG 425 (465)
Q Consensus 394 -SIkl~~n~~e~WTkAlK~lLtNlKwlLaw~~~ 425 (465)
+|++.||++++||+||||||||+||++|||+.
T Consensus 410 y~i~~~fN~De~WTrALkFmLTnlK~~~A~vss 442 (447)
T KOG2751|consen 410 YSIKVQFNSDENWTRALKFMLTNLKWLLAWVSS 442 (447)
T ss_pred eeEEeeecchHHHHHHHHHHHhccHHHHHHHhh
Confidence 69999999999999999999999999999984
No 2
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=100.00 E-value=5.3e-98 Score=753.00 Aligned_cols=304 Identities=46% Similarity=0.854 Sum_probs=223.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 117 PLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAEL 196 (465)
Q Consensus 117 PLC~eC~d~Lle~L~~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el 196 (465)
|||.||++.|+++|+.+++++++|+++|..||++++.+.......+++.+++.+|++||+++.++|++||++++++++|+
T Consensus 1 PlC~eC~~~l~~~l~~~~~~~~~E~~~Y~~fL~~l~~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el 80 (314)
T PF04111_consen 1 PLCQECTDLLLEQLDKQLEQAEKERDTYQEFLKKLEEESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQEL 80 (314)
T ss_dssp -----------------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999853321123466788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeeecCCeeeeccccCCC
Q 012379 197 KELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGR 276 (465)
Q Consensus 197 ~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~LdkL~ktNV~Nd~F~I~hdG~fGTINGlRLGr 276 (465)
.+++.+..+++++|.+||+++|.+++++.+++++++++++||++++++|++|+||||||++|||||||+|||||||||||
T Consensus 81 ~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ktNv~n~~F~I~hdG~fGTINGlRLGr 160 (314)
T PF04111_consen 81 EELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRKTNVYNDTFHIWHDGPFGTINGLRLGR 160 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT--TTTTT--EEEETTEEEETTEEE--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhceeeEeecCCeeeECCeeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecCCCceeeccC----CceeecccCC-----CCccccchh
Q 012379 277 LPKIPVEWDEINAAWGQACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIMDSN----NNTYELFGPV-----NLFWSTRYD 347 (465)
Q Consensus 277 lp~~~V~W~EINAAwGQ~~LLL~tla~~l~~~f~~~ykLvPmGS~SkI~~~~----~~~~~Lyg~~-----~lf~~~kFD 347 (465)
+|++||+|+||||||||+||||++||++++++|+ +|+|+||||+|+|++.. +.+|+|||++ ++|++++||
T Consensus 161 l~~~~V~W~EINAA~Gq~~LLL~~la~~l~~~f~-~y~l~P~Gs~S~I~~~~~~~~~~~~~ly~~~~~~~~~~f~~~~Fd 239 (314)
T PF04111_consen 161 LPNVPVEWNEINAAWGQTALLLQTLAKKLNFKFQ-RYRLVPMGSFSKIEKLEGDKDKTTYPLYSSGSFSLGRLFSSRKFD 239 (314)
T ss_dssp BTTB---HHHHHHHHHHHHHHHHHHHHHCT---S-SEEEE--GGG-EEEECS---TCEEEESS--SS----GGG--SHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCcc-cceeEecCCCCEEEEeccCCCCeEEecccCCCchhhhhhhhcchH
Confidence 9999999999999999999999999999999999 99999999999999875 5789999876 469999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCceeeeCCccceeeEEecCCCCchhhHHHHHHHhhHHHHHHHHhhCC
Q 012379 348 KAMTLFLSCLKDFAEFANSKDQENNIPPDKCFKLPYKIENDKVENYSITQSFNKQENWTKALKYTLCNLKWALFWFVGNT 427 (465)
Q Consensus 348 ~AM~afL~cl~q~~~~~~~~d~~~~~~~~~~~~LPY~I~kdkI~g~SIkl~~n~~e~WTkAlK~lLtNlKwlLaw~~~~t 427 (465)
.||+|||+||+||++|+.+.|+. .++|||+|++|||||.||+++||++++||+|||||||||||+|||++.++
T Consensus 240 ~am~~~L~~~~q~~~~~~~~~~~-------~~~lPy~i~~~~I~~~si~~~~~~~~~WT~AlK~lLtnlKw~l~~~s~~~ 312 (314)
T PF04111_consen 240 KAMVAFLDCLQQLAEFVEKRDPQ-------SFELPYKIDKDKIGGVSIKLQFNSEEEWTKALKYLLTNLKWLLAWVSSQL 312 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH------------SS-ECTTEECTCES-STTS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCc-------ccccceeccCCccCCeeeeecCCChhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999987742 69999999999999999999999999999999999999999999999875
Q ss_pred c
Q 012379 428 N 428 (465)
Q Consensus 428 ~ 428 (465)
+
T Consensus 313 ~ 313 (314)
T PF04111_consen 313 S 313 (314)
T ss_dssp -
T ss_pred c
Confidence 4
No 3
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=99.44 E-value=7.7e-11 Score=115.90 Aligned_cols=244 Identities=18% Similarity=0.222 Sum_probs=137.9
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccc-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 116 QPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEG-EAR-DVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVN 193 (465)
Q Consensus 116 hPLC~eC~d~Lle~L~~qle~~~~E~d~Y~~fL~~L~~-~~~-~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~ 193 (465)
..+|..|+..=+-.++.++.++..+++....-++.+-. ... .......+..+...++..-..+..+++.+.++.++..
T Consensus 11 ~~~C~~C~~~~L~~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r 90 (302)
T PF10186_consen 11 RFYCANCVNNRLLELRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKR 90 (302)
T ss_pred CeECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34899999999999999999999999888876654322 100 0001122222333333444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhcccCCCceeeee---------
Q 012379 194 AELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLEL--LKRTNVLNDAFPIWH--------- 262 (465)
Q Consensus 194 ~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ldk--L~ktNV~Nd~F~I~h--------- 262 (465)
+++.++..+.......-..+..........+....++....+.++.....++.. -+...-++..|+|..
T Consensus 91 ~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~r~~l~~~l~~ifpI~~~~~~~~~~~ 170 (302)
T PF10186_consen 91 ERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQLARRRRQLIQELSEIFPIEQVSSPRRPSD 170 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCceeecccccCCC
Confidence 444443333332221111222222222223333333333333333332222221 112223456899932
Q ss_pred --cCCeeeeccccCCCCCC-CCCChHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecCCCceeecc---CCceeeccc
Q 012379 263 --DGEFGTINNFRLGRLPK-IPVEWDEINAAWGQACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIMDS---NNNTYELFG 336 (465)
Q Consensus 263 --dG~fGTINGlRLGrlp~-~~V~W~EINAAwGQ~~LLL~tla~~l~~~f~~~ykLvPmGS~SkI~~~---~~~~~~Lyg 336 (465)
.+.|. |.|++|=...+ ...+=.+|+||+|.++.|+..+|.+|++.+ .|.+.|+||+|.|.+. ....++.+.
T Consensus 171 ~~~~~~~-I~~~~lp~~~~~~~~~~~~isaALgyvahlv~lls~yL~v~L--py~i~~~gs~s~i~d~~~~~~~~~~~~~ 247 (302)
T PF10186_consen 171 SSSSEYT-ICGLPLPNSRDFNSLPDEEISAALGYVAHLVSLLSRYLGVPL--PYPITPSGSRSTIIDFSPSIDRPLPSLS 247 (302)
T ss_pred CCCCCee-ecCcccCCCcccccCCHHHHHHHHHHHHHHHHHHHHHhCCCC--CCCcccCccccchhhcccccCCcchhhh
Confidence 35665 99988765532 345668999999999999999999998877 6999999999999771 111222111
Q ss_pred CCCCccccchhHHHHHHHHHHHHHHH
Q 012379 337 PVNLFWSTRYDKAMTLFLSCLKDFAE 362 (465)
Q Consensus 337 ~~~lf~~~kFD~AM~afL~cl~q~~~ 362 (465)
..+--...+|..|+..+-.-+.|++.
T Consensus 248 ~~~~~~~~~f~~~v~lLn~nI~~L~~ 273 (302)
T PF10186_consen 248 YESGVDRQRFEYAVFLLNKNIAQLCF 273 (302)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHH
Confidence 11111246899999999998888875
No 4
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=99.11 E-value=5.4e-10 Score=116.50 Aligned_cols=331 Identities=14% Similarity=0.093 Sum_probs=193.0
Q ss_pred ccccccccccccccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCceEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 012379 13 LGSTRMDNSFVVLPKQRPQSHGVPPRPRGSSAQSEASQSGKAMDESFVVIYKSESASDGGGPHIPPPEGGTNGPMQPNNS 92 (465)
Q Consensus 13 ~~~~~~d~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~es~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (465)
++..+.|+|+...+.+.+....+|+--+++..++.+..++.. + ++. + ++.++ ..
T Consensus 22 ~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~t~~~~a~------------~-~~~------~------~~~~~-~~ 75 (447)
T KOG2751|consen 22 LQPIHLDNSLLGSDRMDISELVLPLHKPPQSQGGPTRPRGAS------------S-GDA------T------SGKTP-QE 75 (447)
T ss_pred cchhhhhhhhccccccchhhccCCCCCCccccCCCccCcccc------------C-ccc------c------CCcch-hh
Confidence 345667788888887777777777666555444333332222 0 111 0 11111 23
Q ss_pred ccchhHHHHHHHHHhhcCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHH-HHH----------HHHH----HHhccccc
Q 012379 93 GFHSTITVLKRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIE-AYE----------ACLQ----RLEGEARD 157 (465)
Q Consensus 93 ~ls~~i~~l~~lFdIlSs~s~iDhPLC~eC~d~Lle~L~~qle~~~~E~d-~Y~----------~fL~----~L~~~~~~ 157 (465)
..+....+-...|+-.++++.+|||.|..|...+...+-+ +..+.+.-+ .|. .|.+ ++.++...
T Consensus 76 ~~~~~~~~~p~r~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~~~~~f~i~~~qt~~d~PlC~eC~d~l~~~ld~e~~~ 154 (447)
T KOG2751|consen 76 SSVVVYFSPPVRDSDTEHNLSFELGENGSDGSNTKTLSAT-INVLTRLFDILSSQTQVDHPLCEECMDVLLNKLDKEVED 154 (447)
T ss_pred ccceecccCcccccccccccccccccccchhhhhHHHHHH-HHHHHHHHHHhhccCCcccchHHHHHHHHHHHHHHHHHH
Confidence 3555566666788999999999999999999988774433 333222221 121 1111 11111100
Q ss_pred CCCHHH-HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 012379 158 VLSEAD-FLKEKLKIEE-----EERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEER 231 (465)
Q Consensus 158 ~~~ee~-l~~e~~~Le~-----EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~ 231 (465)
...+-+ ..+-++.||+ ++..+..|++++..|..++-+++++++++...++.++.+. +
T Consensus 155 ~~~e~~~Y~~~l~~Le~~~~~~~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~--------------~--- 217 (447)
T KOG2751|consen 155 AEDEVDTYKACLQRLEQQNQDVSEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKEL--------------E--- 217 (447)
T ss_pred HHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------H---
Confidence 000000 0111122221 4444555556666555555555555555555554333211 1
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCCcee------eeecCCeeeeccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhc
Q 012379 232 DAISSKIEVSQAHLELLKRTNVLNDAFP------IWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYF 305 (465)
Q Consensus 232 ~sl~~q~~~~~~~LdkL~ktNV~Nd~F~------I~hdG~fGTINGlRLGrlp~~~V~W~EINAAwGQ~~LLL~tla~~l 305 (465)
..-++..++.++|.+-|. |-|+|...+|++.|.|+++...+-|.+++++||-.+.+.-.++.+.
T Consensus 218 ----------~~~~~~~e~~~~~~~ey~~~~~q~~~~~del~Sle~q~~~s~~qldkL~ktNv~n~~F~I~~~G~fgtIN 287 (447)
T KOG2751|consen 218 ----------FKAERLNEEEDQYWREYNNFQRQLIEHQDELDSLEAQIEYSQAQLDKLRKTNVFNATFHIWHDGEFGTIN 287 (447)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhhhhhheeeEeecccccccc
Confidence 111222223333333333 5678999999999999999999999999999999999999999999
Q ss_pred CCCCCCceeeeecCCCceeeccCC----------------ceeec--ccCCCCccccchhHHHHHHHHHHHHHHHHHhcc
Q 012379 306 RPKFPYRIKIIPMGSYPRIMDSNN----------------NTYEL--FGPVNLFWSTRYDKAMTLFLSCLKDFAEFANSK 367 (465)
Q Consensus 306 ~~~f~~~ykLvPmGS~SkI~~~~~----------------~~~~L--yg~~~lf~~~kFD~AM~afL~cl~q~~~~~~~~ 367 (465)
|+... +|..+|.|..+-+..... ..|.| ||+.. |++.+
T Consensus 288 ~FRLG-~lp~~pVew~EINAA~GQ~vLLL~~l~~kig~~~~~y~lvp~GshS-----------------------yI~~~ 343 (447)
T KOG2751|consen 288 NFRLG-RLPSVPVEWDEINAAWGQTVLLLHTLANKIGLNFVRYRLVPMGSHS-----------------------YIKKR 343 (447)
T ss_pred cceec-cccCCCcCHHHHHHHhhhHHHHHHHHHHhcCcccceeeeecccchh-----------------------HHHHh
Confidence 77776 899999887765543211 12222 22222 33333
Q ss_pred CCCCCCCCCCCCCCceeeeCCccceeeEEecCCCCchhhHHHHHHHhhHHHHHHHHh-hCCccCCcccc
Q 012379 368 DQENNIPPDKCFKLPYKIENDKVENYSITQSFNKQENWTKALKYTLCNLKWALFWFV-GNTNFQPVSAM 435 (465)
Q Consensus 368 d~~~~~~~~~~~~LPY~I~kdkI~g~SIkl~~n~~e~WTkAlK~lLtNlKwlLaw~~-~~t~~~~~~~~ 435 (465)
+ ..+||.-..=.-||..+... -..-+||.-.|-.|+.+.-++. +.|+|-++-.+
T Consensus 344 ~----------~~~~~el~l~~sgg~~~f~~----tkfD~amvafLd~L~qf~~e~~~k~~~~~lPy~i 398 (447)
T KOG2751|consen 344 M----------VNLPYELPLFQSGGLKFFWS----TKFDKAMVAFLDCLKQFADELEKKDTSFNLPYDI 398 (447)
T ss_pred c----------cCCCccchhhcCCCceeeec----cccCHHHHHHHHHHHHHHHHHHhcCcccCCcchh
Confidence 2 23666555545566666542 2566899999999999998887 77888876666
No 5
>KOG2896 consensus UV radiation resistance associated protein [General function prediction only]
Probab=98.62 E-value=7.4e-06 Score=84.70 Aligned_cols=159 Identities=18% Similarity=0.244 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC---CceeeeecC-
Q 012379 189 NAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLN---DAFPIWHDG- 264 (465)
Q Consensus 189 ~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~LdkL~ktNV~N---d~F~I~hdG- 264 (465)
.+++.++...++.-...|+..+.++-...-.++.++.++.+.+.++.+ .++++.-- ++|.|..+|
T Consensus 126 ~Ealsk~~~~~~k~~~kL~~kr~q~~~~q~~l~k~~k~l~e~~~~l~a-----------~re~fL~~~~~~~~~irq~~~ 194 (377)
T KOG2896|consen 126 IEALSKKRAHLEKTKQKLEDKRQQFNASQVKLQKQLKSLIELRNELVA-----------KRELFLEQRIQDTFKIRQDGS 194 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-----------HHHhhHhHHHhhhhhhhccCc
Confidence 333333333344444445555555555555566665554444444443 34443332 678888776
Q ss_pred Ce--------------eeeccccCCCCCCCCC-ChHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecCCCceeeccCC
Q 012379 265 EF--------------GTINNFRLGRLPKIPV-EWDEINAAWGQACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIMDSNN 329 (465)
Q Consensus 265 ~f--------------GTINGlRLGrlp~~~V-~W~EINAAwGQ~~LLL~tla~~l~~~f~~~ykLvPmGS~SkI~~~~~ 329 (465)
+. -||-|++|--.++..- +=.|+-||+|.++.|+++||.+|.+.. +|.|++-||.|+|.|.-+
T Consensus 195 ~~s~i~~l~~~~~~~v~tIrGl~lp~~~d~~~~s~~~~aaALGylaHLv~~Is~~L~~pL--RYPIl~~~Sks~I~D~i~ 272 (377)
T KOG2896|consen 195 PLSKILPLQFSYCHLVFTIRGLKLPFIEDKQNKSEQETAAALGYLAHLVSMISKYLEVPL--RYPILLAGSKSYIRDYIP 272 (377)
T ss_pred chheeecCCcccchhhhhhhcccCCchhhhhccchHHHHHHHHHHHHHHHHHHHHhcccc--ccccccccccceecccCC
Confidence 22 3666666655444222 356899999999999999999996555 799999999999987532
Q ss_pred c------eeecccCCCCccccchhHHHHHHHHHHHHHHH
Q 012379 330 N------TYELFGPVNLFWSTRYDKAMTLFLSCLKDFAE 362 (465)
Q Consensus 330 ~------~~~Lyg~~~lf~~~kFD~AM~afL~cl~q~~~ 362 (465)
. .+++|.-... ..+|+.||-.+-.=+.|+..
T Consensus 273 ~~~~ttr~fply~k~~~--~e~f~~glylL~qNiaqlr~ 309 (377)
T KOG2896|consen 273 DIETTTREFPLYTKSQE--IEQFEYGLYLLNQNIAQLRY 309 (377)
T ss_pred ccccccccccCccccch--HHHHHHHHHHHhccHHHHHH
Confidence 1 2556632110 34677887766666666653
No 6
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=97.44 E-value=0.044 Score=56.40 Aligned_cols=213 Identities=21% Similarity=0.274 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 138 TRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEF 217 (465)
Q Consensus 138 ~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~ 217 (465)
..+.+.+..-++.++.+ ++.+.+++.+||.|..++.++|.+++.+.++++++......+...+..+-.++-.+.
T Consensus 42 ~~~~~~~~~el~~le~E------e~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~ 115 (314)
T PF04111_consen 42 EEDIEELEEELEKLEQE------EEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEER 115 (314)
T ss_dssp HH--HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666543 356778888999999999999999999998888877777777666665555566666
Q ss_pred hHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHHHH----HHHH-hhcccCCCc
Q 012379 218 NNFQFQLIAHQEERDAIS-----------------------------------SKIEVSQAH----LELL-KRTNVLNDA 257 (465)
Q Consensus 218 n~~q~ql~~~~~e~~sl~-----------------------------------~q~~~~~~~----LdkL-~ktNV~Nd~ 257 (465)
..+..++....++++.|. +.+..|--| |..| ++.|+=-..
T Consensus 116 ~sl~~q~~~~~~~L~~L~ktNv~n~~F~I~hdG~fGTINGlRLGrl~~~~V~W~EINAA~Gq~~LLL~~la~~l~~~f~~ 195 (314)
T PF04111_consen 116 DSLKNQYEYASNQLDRLRKTNVYNDTFHIWHDGPFGTINGLRLGRLPNVPVEWNEINAAWGQTALLLQTLAKKLNFKFQR 195 (314)
T ss_dssp HHHHHHHHHHHHHHHCHHT--TTTTT--EEEETTEEEETTEEE--BTTB---HHHHHHHHHHHHHHHHHHHHHCT---SS
T ss_pred HHHHHHHHHHHHHHHHHHhcCchhceeeEeecCCeeeECCeeeccCCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 666666655555555443 112222222 2222 344443345
Q ss_pred eeeeecCCeeeeccccCCC-------CCC------CCCChHHHHHHHHHHHHHHHHHHhhcC---C-CCCCceeeeecCC
Q 012379 258 FPIWHDGEFGTINNFRLGR-------LPK------IPVEWDEINAAWGQACLLLHTMCQYFR---P-KFPYRIKIIPMGS 320 (465)
Q Consensus 258 F~I~hdG~fGTINGlRLGr-------lp~------~~V~W~EINAAwGQ~~LLL~tla~~l~---~-~f~~~ykLvPmGS 320 (465)
|.|---|.|-+|=-+.-+. ..+ ..-.+...|.|+--.+-+|.-++..+. . .|.+-|++.
T Consensus 196 y~l~P~Gs~S~I~~~~~~~~~~~~~ly~~~~~~~~~~f~~~~Fd~am~~~L~~~~q~~~~~~~~~~~~~~lPy~i~---- 271 (314)
T PF04111_consen 196 YRLVPMGSFSKIEKLEGDKDKTTYPLYSSGSFSLGRLFSSRKFDKAMVAFLDCLQQLAEFVEKRDPQSFELPYKID---- 271 (314)
T ss_dssp EEEE--GGG-EEEECS---TCEEEESS--SS----GGG--SHHHHHHHHHHHHHHHHHHHHHHHHH-----SS-EC----
T ss_pred ceeEecCCCCEEEEeccCCCCeEEecccCCCchhhhhhhhcchHHHHHHHHHHHHHHHHHHHhcCCcccccceecc----
Confidence 6666667666665554111 011 124688999999888888887777663 1 233334442
Q ss_pred CceeeccCCceeecccCCCCccccchhHHHHHHHHHHHHHHHHHhcc
Q 012379 321 YPRIMDSNNNTYELFGPVNLFWSTRYDKAMTLFLSCLKDFAEFANSK 367 (465)
Q Consensus 321 ~SkI~~~~~~~~~Lyg~~~lf~~~kFD~AM~afL~cl~q~~~~~~~~ 367 (465)
--+|-+ ..+-+. +-...++-+||.-+|..|+-+..|+.++
T Consensus 272 ~~~I~~---~si~~~----~~~~~~WT~AlK~lLtnlKw~l~~~s~~ 311 (314)
T PF04111_consen 272 KDKIGG---VSIKLQ----FNSEEEWTKALKYLLTNLKWLLAWVSSQ 311 (314)
T ss_dssp TTEECT---CES-ST----TS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccCC---eeeeec----CCChhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334422 222111 1124588999999999999999988654
No 7
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.98 E-value=0.032 Score=55.58 Aligned_cols=126 Identities=20% Similarity=0.237 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Q 012379 125 VLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVL-SEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKEL--EL 201 (465)
Q Consensus 125 ~Lle~L~~qle~~~~E~d~Y~~fL~~L~~~~~~~~-~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~l--e~ 201 (465)
..|+.+|.+.+.+...++.|..+|++++.+....- .-.++..+++.++.+-..+..+|.++....+..+..+... +.
T Consensus 10 ~~iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~ 89 (239)
T COG1579 10 LAIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDER 89 (239)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHH
Confidence 35778999999999999999999998875432100 0122333334444444444444444444333333333222 23
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012379 202 KSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 250 (465)
Q Consensus 202 e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~LdkL~k 250 (465)
+..+|+.+....-+..+++..++..+.+++..+..++...+..+.++++
T Consensus 90 e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~ 138 (239)
T COG1579 90 ELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEK 138 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555554444555566666666666666666665555555555443
No 8
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.86 E-value=0.061 Score=62.76 Aligned_cols=131 Identities=19% Similarity=0.254 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCC--------HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 012379 122 CMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLS--------EADFLKEKLKIEEEE-RKLEAAIEETEKQNAEV 192 (465)
Q Consensus 122 C~d~Lle~L~~qle~~~~E~d~Y~~fL~~L~~~~~~~~~--------ee~l~~e~~~Le~EE-~~L~~eL~~LE~e~~~l 192 (465)
|...=.+..+.+++.+.+..+.|.+-...++.+..+..+ .+.+.+.+..++++. ..+..++.+.|.+.+.|
T Consensus 327 ~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L 406 (1074)
T KOG0250|consen 327 ELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQL 406 (1074)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 333334445555555555555555544444322211100 012233444445555 55666677777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012379 193 NAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTN 252 (465)
Q Consensus 193 ~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~LdkL~ktN 252 (465)
..|.+.++.....|.++++.+-.++..-+.++...+.+...+..++++.+.+|..|++++
T Consensus 407 ~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~~k 466 (1074)
T KOG0250|consen 407 KKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKKTK 466 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 777777777777777777777777777777777777888888899999999999999875
No 9
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.09 E-value=0.18 Score=58.53 Aligned_cols=68 Identities=19% Similarity=0.251 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 180 AAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLEL 247 (465)
Q Consensus 180 ~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ldk 247 (465)
.++.+++.+...+..++..++.+...+...-..++...+.++.++..+.+++..+..++.......+.
T Consensus 434 ~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~l~~l~~~~~~l~~~~~~ 501 (1164)
T TIGR02169 434 AKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARA 501 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444555666666666665555555555555444444333
No 10
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=95.89 E-value=0.51 Score=44.38 Aligned_cols=98 Identities=20% Similarity=0.317 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 125 VLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSK 204 (465)
Q Consensus 125 ~Lle~L~~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~ 204 (465)
..+..+++++++.++........+..++... ....+.++..+++...+....+.+.++..++.+++.+.+.+..
T Consensus 88 ~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~------~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~ 161 (191)
T PF04156_consen 88 QQLQQLQEELDQLQERIQELESELEKLKEDL------QELRELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQ 161 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555443321 1112233334444444555555555555555544555555555
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Q 012379 205 RFKELEERYWQEFNNFQFQLIAHQ 228 (465)
Q Consensus 205 ~L~~~E~~~w~e~n~~q~ql~~~~ 228 (465)
.+...-++.+..++.++..+.+.+
T Consensus 162 ~~~~~~~~~~~~~~~l~~~~~~~~ 185 (191)
T PF04156_consen 162 ELRSQLERLQENLQQLEEKIQELQ 185 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555444455555555555444433
No 11
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=95.80 E-value=0.87 Score=45.07 Aligned_cols=27 Identities=30% Similarity=0.587 Sum_probs=20.1
Q ss_pred hhcccCCCceeeeecCCeeeeccccCCCC
Q 012379 249 KRTNVLNDAFPIWHDGEFGTINNFRLGRL 277 (465)
Q Consensus 249 ~ktNV~Nd~F~I~hdG~fGTINGlRLGrl 277 (465)
+...+|.....| ||.=-+.+=|||||+
T Consensus 166 ~~i~~~~~~i~~--dG~~~~V~~LrlGr~ 192 (251)
T PF11932_consen 166 RTIEVYQGTITL--DGEERQVDFLRLGRV 192 (251)
T ss_pred CceeEEEEEEeE--CCeEEEEEEEeecch
Confidence 445555555555 898889999999995
No 12
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=95.70 E-value=0.35 Score=57.73 Aligned_cols=100 Identities=20% Similarity=0.318 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC---CCceeee
Q 012379 185 TEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVL---NDAFPIW 261 (465)
Q Consensus 185 LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~LdkL~ktNV~---Nd~F~I~ 261 (465)
++.+.++++.++..++.....+...-...|+++...+..+.....+..++..++......... .+.. -......
T Consensus 437 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~ 513 (1163)
T COG1196 437 LQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRA---SQGVRAVLEALESG 513 (1163)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hhhHHHHHHHHhcc
Confidence 333444444444444444444444445566666666666666555555555554444433332 0000 0111122
Q ss_pred ecCCeeeeccccCCCCCCCCCChHH-HHHHHH
Q 012379 262 HDGEFGTINNFRLGRLPKIPVEWDE-INAAWG 292 (465)
Q Consensus 262 hdG~fGTINGlRLGrlp~~~V~W~E-INAAwG 292 (465)
..|.||+ +|-+-.++..|.- |=+|+|
T Consensus 514 ~~Gv~G~-----v~~li~v~~~y~~Aie~alG 540 (1163)
T COG1196 514 LPGVYGP-----VAELIKVKEKYETALEAALG 540 (1163)
T ss_pred CCCccch-----HHHhcCcChHHHHHHHHHcc
Confidence 3466664 3444445557766 667776
No 13
>PRK03918 chromosome segregation protein; Provisional
Probab=95.67 E-value=0.49 Score=54.07 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=11.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHH
Q 012379 212 RYWQEFNNFQFQLIAHQEERDAI 234 (465)
Q Consensus 212 ~~w~e~n~~q~ql~~~~~e~~sl 234 (465)
.++..++.++.++..++.+...+
T Consensus 304 ~l~~~~~~l~~~~~~l~~~~~~l 326 (880)
T PRK03918 304 EYLDELREIEKRLSRLEEEINGI 326 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555544444444433
No 14
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.66 E-value=0.63 Score=54.31 Aligned_cols=111 Identities=14% Similarity=0.179 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 119 CLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEA-----RDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVN 193 (465)
Q Consensus 119 C~eC~d~Lle~L~~qle~~~~E~d~Y~~fL~~L~~~~-----~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~ 193 (465)
|..|+..| ..|+.+.+...++...|..+...+..-. ..-+.-.+...+...+.+.-.++.++++.++++...+.
T Consensus 197 ~~~~~~~l-~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~k~~~v~y~~~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~ 275 (1072)
T KOG0979|consen 197 LTTKTEKL-NRLEDEIDKLEKDVERVRERERKKSKIELLEKKKKWVEYKKHDREYNAYKQAKDRAKKELRKLEKEIKPIE 275 (1072)
T ss_pred HHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 44555543 4477777777777666665544332110 01111122222333333344444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 012379 194 AELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEE 230 (465)
Q Consensus 194 ~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e 230 (465)
.-++.|+.+..++...=.+-|.++|.......+..+.
T Consensus 276 ~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek 312 (1072)
T KOG0979|consen 276 DKKEELESEKKETRSKISQKQRELNEALAKVQEKFEK 312 (1072)
T ss_pred hhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444443333333334444444444443333333
No 15
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.65 E-value=0.26 Score=53.28 Aligned_cols=33 Identities=12% Similarity=0.442 Sum_probs=15.2
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 116 QPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQ 149 (465)
Q Consensus 116 hPLC~eC~d~Lle~L~~qle~~~~E~d~Y~~fL~ 149 (465)
++.|.-|...+-+. ..++..++.+++.+..-++
T Consensus 284 ~~~Cp~C~~~~~~~-~~~~~~l~d~i~~l~~~l~ 316 (562)
T PHA02562 284 GGVCPTCTQQISEG-PDRITKIKDKLKELQHSLE 316 (562)
T ss_pred CCCCCCCCCcCCCc-HHHHHHHHHHHHHHHHHHH
Confidence 55677775554333 3333333333333333333
No 16
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=95.65 E-value=0.58 Score=54.47 Aligned_cols=13 Identities=23% Similarity=0.414 Sum_probs=9.7
Q ss_pred ccchhHHHHHHHH
Q 012379 343 STRYDKAMTLFLS 355 (465)
Q Consensus 343 ~~kFD~AM~afL~ 355 (465)
..+|..|+.+.|.
T Consensus 534 ~~~y~~Aie~~lg 546 (1164)
T TIGR02169 534 GERYATAIEVAAG 546 (1164)
T ss_pred CHHHHHHHHHHhh
Confidence 4678888887775
No 17
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=95.57 E-value=0.92 Score=46.91 Aligned_cols=157 Identities=13% Similarity=0.216 Sum_probs=82.1
Q ss_pred cchhHHHHHHHHHhhcCCcccCCcchH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCC
Q 012379 94 FHSTITVLKRAFEIATSQTQVEQPLCL--------------ECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVL 159 (465)
Q Consensus 94 ls~~i~~l~~lFdIlSs~s~iDhPLC~--------------eC~d~Lle~L~~qle~~~~E~d~Y~~fL~~L~~~~~~~~ 159 (465)
|.|.+..-..+.-|.|.-.+-.-| +. .|...-++.|++++..++.|....+.-..+|..++.. .
T Consensus 116 LrHeL~~kdeLL~~ys~~~ee~~~-~~~~~~~~~~~~~~~~~~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~-~ 193 (306)
T PF04849_consen 116 LRHELSMKDELLQIYSNDDEESEP-ESSESTPLRRNESSLSSQKCIQLEALQEKLKSLEEENEQLRSEASQLKTETDT-Y 193 (306)
T ss_pred HHHHHHHHHHHHHhcCcHhhhccc-ccCCCccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhh-c
Confidence 556666666777777743321111 22 2233457889999999999998888777777654321 1
Q ss_pred CH-H-----HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhH
Q 012379 160 SE-A-----DFLKE-------KLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQ-------EFNN 219 (465)
Q Consensus 160 ~e-e-----~l~~e-------~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~-------e~n~ 219 (465)
.+ + ++-++ +..|.+|..+...+...-+.|...|-+++.+++.+.+.+-.+-++.-. .-+.
T Consensus 194 EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~ 273 (306)
T PF04849_consen 194 EEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQ 273 (306)
T ss_pred cHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 11 0 11111 122333333333333333344444444444444444333222222222 2233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012379 220 FQFQLIAHQEERDAISSKIEVSQAHLELLKRTN 252 (465)
Q Consensus 220 ~q~ql~~~~~e~~sl~~q~~~~~~~LdkL~ktN 252 (465)
++.++.++++......+-+.-++.+|..||+.|
T Consensus 274 L~aEL~elqdkY~E~~~mL~EaQEElk~lR~~~ 306 (306)
T PF04849_consen 274 LQAELQELQDKYAECMAMLHEAQEELKTLRKRT 306 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 445555555555555566667889999999876
No 18
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.48 E-value=0.9 Score=45.47 Aligned_cols=101 Identities=17% Similarity=0.188 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH--
Q 012379 165 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQ-- 242 (465)
Q Consensus 165 ~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~-- 242 (465)
..|+..++.....|..+|.++..+.+.+..++..+..+ +..+|..+-.....+........++..++..+.....
T Consensus 95 ~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~---~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~~ 171 (239)
T COG1579 95 NIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKER---LERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEK 171 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444555555555555555555555554444433 2344445555555555555555554544444444433
Q ss_pred ------HHHHHHhhcccCCCceeeeecCCeeeeccccCCCC
Q 012379 243 ------AHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRL 277 (465)
Q Consensus 243 ------~~LdkL~ktNV~Nd~F~I~hdG~fGTINGlRLGrl 277 (465)
...+++++.+ -+-..+.|+|=|=|..
T Consensus 172 l~~ell~~yeri~~~~---------kg~gvvpl~g~~C~GC 203 (239)
T COG1579 172 LDPELLSEYERIRKNK---------KGVGVVPLEGRVCGGC 203 (239)
T ss_pred cCHHHHHHHHHHHhcC---------CCceEEeecCCcccCC
Confidence 3345665532 1225677777776654
No 19
>PRK11637 AmiB activator; Provisional
Probab=95.45 E-value=0.32 Score=51.62 Aligned_cols=74 Identities=19% Similarity=0.304 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 128 DKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 207 (465)
Q Consensus 128 e~L~~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~ 207 (465)
+.+++++++++++++....-++.++.+. .++..++..++.+...+..+|..++.+...++++|..++.++..++
T Consensus 43 ~~~~~~l~~l~~qi~~~~~~i~~~~~~~------~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q 116 (428)
T PRK11637 43 SDNRDQLKSIQQDIAAKEKSVRQQQQQR------ASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLE 116 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777777777777666666554332 2233344444444444455555555555555555555554444443
No 20
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.16 E-value=1.2 Score=45.83 Aligned_cols=29 Identities=17% Similarity=0.196 Sum_probs=23.9
Q ss_pred CccchhHHHHHHHHHhhcCCcccCCcchH
Q 012379 92 SGFHSTITVLKRAFEIATSQTQVEQPLCL 120 (465)
Q Consensus 92 ~~ls~~i~~l~~lFdIlSs~s~iDhPLC~ 120 (465)
+.|...|....++|.=+..++..+.|-+.
T Consensus 78 ~EL~~~I~egr~~~~~~E~~~~~~nPpLf 106 (325)
T PF08317_consen 78 RELKKYISEGRQIFEEIEEETYESNPPLF 106 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCHHH
Confidence 45788888889999888888888888765
No 21
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=95.05 E-value=1.2 Score=51.67 Aligned_cols=11 Identities=27% Similarity=0.434 Sum_probs=6.3
Q ss_pred cchhHHHHHHH
Q 012379 344 TRYDKAMTLFL 354 (465)
Q Consensus 344 ~kFD~AM~afL 354 (465)
.+|+.|+.+.+
T Consensus 533 ~~~~~a~~~~~ 543 (1179)
T TIGR02168 533 EGYEAAIEAAL 543 (1179)
T ss_pred hhHHHHHHHHH
Confidence 56666666543
No 22
>PRK11637 AmiB activator; Provisional
Probab=95.04 E-value=1.7 Score=46.33 Aligned_cols=65 Identities=12% Similarity=0.237 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 012379 171 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAIS 235 (465)
Q Consensus 171 Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~ 235 (465)
+....++|..+..+++.+.++++..+.+++.+..+|+.+..+.=..+..+..++...+.++..+.
T Consensus 175 l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~ 239 (428)
T PRK11637 175 LKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELR 239 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555555555555555555555544444433334444443333333333333
No 23
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=94.95 E-value=1.7 Score=50.53 Aligned_cols=20 Identities=15% Similarity=0.046 Sum_probs=11.9
Q ss_pred cchhHHHHHHHHHHHHHHHH
Q 012379 344 TRYDKAMTLFLSCLKDFAEF 363 (465)
Q Consensus 344 ~kFD~AM~afL~cl~q~~~~ 363 (465)
..|+..+.+|..+...|...
T Consensus 1025 ~~f~~~~~~F~~v~~~f~~~ 1044 (1179)
T TIGR02168 1025 EIDREARERFKDTFDQVNEN 1044 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666553
No 24
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=94.73 E-value=1.1 Score=52.65 Aligned_cols=118 Identities=18% Similarity=0.289 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeee
Q 012379 183 EETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWH 262 (465)
Q Consensus 183 ~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~LdkL~ktNV~Nd~F~I~h 262 (465)
..+..++.+.+.+++.|+.+.+.++++..+.=.++|.++..+..-++++..++..+......++.-+
T Consensus 390 ~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~------------- 456 (1074)
T KOG0250|consen 390 NELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENIS------------- 456 (1074)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-------------
Confidence 3444455566666666666666666666667777777777777777776666665555544443322
Q ss_pred cCCeeeeccccCCCCCCCCCChHHHHHHHH-HHHHHHHHHHhhcCCCCCCceeeeecCCCceeecc
Q 012379 263 DGEFGTINNFRLGRLPKIPVEWDEINAAWG-QACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIMDS 327 (465)
Q Consensus 263 dG~fGTINGlRLGrlp~~~V~W~EINAAwG-Q~~LLL~tla~~l~~~f~~~ykLvPmGS~SkI~~~ 327 (465)
-+|+.|+=+.-.. +.|+| ++.-||.+|-+.. ..|+ +--.=|+|+|-++.+.
T Consensus 457 ----~~l~~lk~~k~dk--------vs~FG~~m~~lL~~I~r~~-~~f~-~~P~GPlG~~Vtl~~~ 508 (1074)
T KOG0250|consen 457 ----EELKDLKKTKTDK--------VSAFGPNMPQLLRAIERRK-RRFQ-TPPKGPLGKYVTLKEP 508 (1074)
T ss_pred ----HHHHHHHhcccch--------hhhcchhhHHHHHHHHHHH-hcCC-CCCCCCccceeEecCc
Confidence 1244444443211 22333 5677888887654 2444 2224488899888664
No 25
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=94.69 E-value=0.87 Score=48.90 Aligned_cols=85 Identities=19% Similarity=0.245 Sum_probs=56.8
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 116 QPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAE 195 (465)
Q Consensus 116 hPLC~eC~d~Lle~L~~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~e 195 (465)
+|.|..| ....++++++..+|+..-..-+....++. ..+++++..++++-..+..+|.+.+.+..++++.
T Consensus 26 ~~~~s~s----~~a~~~~l~q~q~ei~~~~~~i~~~~~~~------~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~ 95 (420)
T COG4942 26 VLAAAFS----AAADDKQLKQIQKEIAALEKKIREQQDQR------AKLEKQLKSLETEIASLEAQLIETADDLKKLRKQ 95 (420)
T ss_pred ccccchh----HHhHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Confidence 5667677 44445777777776666555555443221 3466677777778888888888888777888777
Q ss_pred HHHHHHHHHHHHHHH
Q 012379 196 LKELELKSKRFKELE 210 (465)
Q Consensus 196 l~~le~e~~~L~~~E 210 (465)
|.+++..+..|+.++
T Consensus 96 I~~~~~~l~~l~~q~ 110 (420)
T COG4942 96 IADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777666554
No 26
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.61 E-value=1.1 Score=53.13 Aligned_cols=96 Identities=21% Similarity=0.328 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 012379 174 EERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNV 253 (465)
Q Consensus 174 EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~LdkL~ktNV 253 (465)
.-.+...+|..++.+...+..|+.+.++++..+..++.++-...+.+.-.+.+......+...+ ..+..-|-+|+..
T Consensus 536 ~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~-~kVl~al~r~kes-- 612 (1293)
T KOG0996|consen 536 SLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSR-NKVLDALMRLKES-- 612 (1293)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHHc--
Confidence 3333444566666666666677777777777777777777666666655555443333322222 1122334555543
Q ss_pred CCCceeeeecCCeeeeccc--cCCCCCCCCCChH
Q 012379 254 LNDAFPIWHDGEFGTINNF--RLGRLPKIPVEWD 285 (465)
Q Consensus 254 ~Nd~F~I~hdG~fGTINGl--RLGrlp~~~V~W~ 285 (465)
|-|+|| |||-|..++-.++
T Consensus 613 -------------G~i~Gf~GRLGDLg~Id~kYD 633 (1293)
T KOG0996|consen 613 -------------GRIPGFYGRLGDLGAIDEKYD 633 (1293)
T ss_pred -------------CCCCccccccccccccchHHH
Confidence 445665 6776655544443
No 27
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=94.43 E-value=3.6 Score=42.64 Aligned_cols=159 Identities=16% Similarity=0.203 Sum_probs=94.3
Q ss_pred CccchhHHHHHHHHHhhcCCcccCCc-chHHHHHH---HHHHHHHHHHH------HHHHHHHHHHHHHHHhcccc-----
Q 012379 92 SGFHSTITVLKRAFEIATSQTQVEQP-LCLECMRV---LSDKLDKEVDD------VTRDIEAYEACLQRLEGEAR----- 156 (465)
Q Consensus 92 ~~ls~~i~~l~~lFdIlSs~s~iDhP-LC~eC~d~---Lle~L~~qle~------~~~E~d~Y~~fL~~L~~~~~----- 156 (465)
.-|..+|..-.++|.=+...+.++.| |=.|=+.. .-..|+.|+.- ++....=|.-=.+-+++-..
T Consensus 73 ~EL~~~I~egr~~~~~~E~et~~~nPpLF~EY~~a~~d~r~lm~~Qf~lvK~~aRl~ak~~WYeWR~kllegLk~~L~~~ 152 (312)
T smart00787 73 KELKKYISEGRDLFKEIEEETLINNPPLFKEYFSASPDVKLLMDKQFQLVKTFARLEAKKMWYEWRMKLLEGLKEGLDEN 152 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34778888888999999999999988 44444321 22334444443 34444446544433332110
Q ss_pred -cCC-CH-HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 012379 157 -DVL-SE-ADFL-------KEKLKIEEEERKLEAAIEETEKQNAEVNA----ELKELELKSKRFKELEERYWQEFNNFQF 222 (465)
Q Consensus 157 -~~~-~e-e~l~-------~e~~~Le~EE~~L~~eL~~LE~e~~~l~~----el~~le~e~~~L~~~E~~~w~e~n~~q~ 222 (465)
+.+ .+ ..+. .-+-.+.+....|..++..|.+-..+++. ++..+++++..++.+-...-+....++.
T Consensus 153 ~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~ 232 (312)
T smart00787 153 LEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEE 232 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 00 0111 11122444555566666666655555533 6667777776666666667777778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012379 223 QLIAHQEERDAISSKIEVSQAHLELLKR 250 (465)
Q Consensus 223 ql~~~~~e~~sl~~q~~~~~~~LdkL~k 250 (465)
++...........++..-.+.++..+++
T Consensus 233 ~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 233 ELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888777777777777777777777776
No 28
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=94.39 E-value=2.2 Score=47.28 Aligned_cols=31 Identities=29% Similarity=0.358 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 176 RKLEAAIEETEKQNAEVNAELKELELKSKRF 206 (465)
Q Consensus 176 ~~L~~eL~~LE~e~~~l~~el~~le~e~~~L 206 (465)
..+..+.+.|..+.++..+.|.+|+.++..+
T Consensus 202 e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l 232 (546)
T PF07888_consen 202 EELKEERESLKEQLAEARQRIRELEEDIKTL 232 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444554444444
No 29
>PRK09039 hypothetical protein; Validated
Probab=94.29 E-value=2.3 Score=44.38 Aligned_cols=22 Identities=14% Similarity=0.335 Sum_probs=17.2
Q ss_pred CCchhhHHHHHHHhhHHHHHHH
Q 012379 401 KQENWTKALKYTLCNLKWALFW 422 (465)
Q Consensus 401 ~~e~WTkAlK~lLtNlKwlLaw 422 (465)
...+|.-+.+--..-.++++..
T Consensus 282 ~~~N~~LS~~RA~aV~~~Li~~ 303 (343)
T PRK09039 282 FRDNWELSSARAISVVKFLIAL 303 (343)
T ss_pred cccHHHHHHHHHHHHHHHHHHC
Confidence 3568999998888888887754
No 30
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=94.20 E-value=4.6 Score=37.92 Aligned_cols=66 Identities=17% Similarity=0.401 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 129 KLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 200 (465)
Q Consensus 129 ~L~~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le 200 (465)
..+.++..+.+|.+.....+..+..+- .++......+.++.+...+++..++...+.+.+++.++.
T Consensus 85 ~~~~~l~~l~~el~~l~~~~~~~~~~l------~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 85 ELQQQLQQLQEELDQLQERIQELESEL------EKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555444444433211 112222233334444444555555555555555555554
No 31
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.13 E-value=1.9 Score=49.45 Aligned_cols=169 Identities=15% Similarity=0.215 Sum_probs=98.4
Q ss_pred cCCcchHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 114 VEQPLCLECMRVLSDKLDKEVDD-------VTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETE 186 (465)
Q Consensus 114 iDhPLC~eC~d~Lle~L~~qle~-------~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE 186 (465)
-..|.=.||...|.+..+.=.++ +..|.+.....|+....+... .-.++.++++.|.+.-++|.+.++++.
T Consensus 529 ~~~p~~~E~l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~--~L~~l~e~~~~l~~~ae~LaeR~e~a~ 606 (717)
T PF10168_consen 529 SSSPSPQECLELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLK--ELQELQEERKSLRESAEKLAERYEEAK 606 (717)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566789998887653332222 222222222223222211100 113345555666666666777777777
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeee
Q 012379 187 KQNAEVNAELKELELKSK----RFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWH 262 (465)
Q Consensus 187 ~e~~~l~~el~~le~e~~----~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~LdkL~ktNV~Nd~F~I~h 262 (465)
...+.|.+.+..+-.... .|-.-|++|-+++..++.++..++...+.+++++++...+++ ++.+.-.
T Consensus 607 d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~--~~~~~~~------- 677 (717)
T PF10168_consen 607 DKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQLQDLKASIEQLKKKLDYQQRQIE--SQKSPKK------- 677 (717)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccccccC-------
Confidence 766666665555533322 245678888888888888887777777777777777666665 2222211
Q ss_pred cCCeeeeccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhc
Q 012379 263 DGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYF 305 (465)
Q Consensus 263 dG~fGTINGlRLGrlp~~~V~W~EINAAwGQ~~LLL~tla~~l 305 (465)
.+|+ +| .--+..|-.++.|-.--+..+.+.+
T Consensus 678 ----~s~~------L~--~~Q~~~I~~iL~~~~~~I~~~v~~i 708 (717)
T PF10168_consen 678 ----KSIV------LS--ESQKRTIKEILKQQGEEIDELVKQI 708 (717)
T ss_pred ----CCcc------CC--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 22 2568889999998888887777654
No 32
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=94.13 E-value=5.1 Score=38.91 Aligned_cols=27 Identities=19% Similarity=0.361 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012379 126 LSDKLDKEVDDVTRDIEAYEACLQRLE 152 (465)
Q Consensus 126 Lle~L~~qle~~~~E~d~Y~~fL~~L~ 152 (465)
||..|+.++.+..+.......-+..+.
T Consensus 28 lIksLKeei~emkk~e~~~~k~m~ei~ 54 (201)
T PF13851_consen 28 LIKSLKEEIAEMKKKEERNEKLMAEIS 54 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666776666655555555554443
No 33
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=94.09 E-value=1.2 Score=53.01 Aligned_cols=80 Identities=16% Similarity=0.177 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 012379 180 AAIEETEKQNAEVNAELKELELKSKRFKELEERYW---QEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLND 256 (465)
Q Consensus 180 ~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w---~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~LdkL~ktNV~Nd 256 (465)
+.|++|-+..++|+++|.++.+. |-++|...= ...+.-..+|..++.+.+.|..-+.....|+++|+..||+..
T Consensus 1225 ~~i~~l~~~~~~lr~~l~~~~e~---L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL~e~~~~ik~sdi~GA 1301 (1758)
T KOG0994|consen 1225 EDIAQLASATESLRRQLQALTED---LPQEEETLSDITNSLPLAGKDLESLQREFNGLLTTYKELREQLEKIKESDILGA 1301 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh---hhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhH
Confidence 34444555555555555444433 223333332 333444578888899999999999999999999999998765
Q ss_pred ceeeee
Q 012379 257 AFPIWH 262 (465)
Q Consensus 257 ~F~I~h 262 (465)
.=-|.|
T Consensus 1302 ~~~~r~ 1307 (1758)
T KOG0994|consen 1302 FNSTRH 1307 (1758)
T ss_pred HHHHHH
Confidence 444444
No 34
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=94.03 E-value=1 Score=42.61 Aligned_cols=18 Identities=0% Similarity=0.202 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 012379 125 VLSDKLDKEVDDVTRDIE 142 (465)
Q Consensus 125 ~Lle~L~~qle~~~~E~d 142 (465)
.+-.+++..++.+.++|+
T Consensus 54 ~VRkqY~~~i~~AKkqRk 71 (161)
T TIGR02894 54 YVRKQYEEAIELAKKQRK 71 (161)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 355677777777777775
No 35
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=93.97 E-value=2.7 Score=41.45 Aligned_cols=80 Identities=19% Similarity=0.285 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012379 171 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 250 (465)
Q Consensus 171 Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~LdkL~k 250 (465)
++.+..+....++.+|....+++.+|..+...++.|+..+.++-.-...+.-++..+...+..+..+++.+...+.+|.+
T Consensus 125 ~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~ 204 (237)
T PF00261_consen 125 LEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEK 204 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555666666666666666666666666666666666666666666666666666666666666666666554
No 36
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=93.94 E-value=2.7 Score=50.45 Aligned_cols=55 Identities=15% Similarity=0.187 Sum_probs=35.0
Q ss_pred cchhHHHHHHHHHhhcCCcccCC-------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 94 FHSTITVLKRAFEIATSQTQVEQ-------------PLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQ 149 (465)
Q Consensus 94 ls~~i~~l~~lFdIlSs~s~iDh-------------PLC~eC~d~Lle~L~~qle~~~~E~d~Y~~fL~ 149 (465)
++.+......||+-.+|-...+. --|..| +.++..++.+++.++++++.-.+|.+
T Consensus 150 ~~~kp~err~iiEEaaGv~~y~~r~~ea~~~L~~~~~nl~~~-~~~~~el~~~l~~L~~q~~~a~~y~~ 217 (1163)
T COG1196 150 INAKPEERRKLIEEAAGVSKYKERKEEAERKLERTEENLERL-EDLLEELEKQLEKLERQAEKAERYQE 217 (1163)
T ss_pred HcCCHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556667777666443321 125553 44666789999998888888777665
No 37
>PRK03918 chromosome segregation protein; Provisional
Probab=93.91 E-value=2.2 Score=48.90 Aligned_cols=8 Identities=13% Similarity=0.256 Sum_probs=4.3
Q ss_pred CCcccCCc
Q 012379 110 SQTQVEQP 117 (465)
Q Consensus 110 s~s~iDhP 117 (465)
.|.+++.+
T Consensus 133 ~Qg~~~~~ 140 (880)
T PRK03918 133 RQGEIDAI 140 (880)
T ss_pred eccchHHH
Confidence 45555554
No 38
>PRK02224 chromosome segregation protein; Provisional
Probab=93.82 E-value=2.3 Score=48.87 Aligned_cols=7 Identities=29% Similarity=0.572 Sum_probs=3.7
Q ss_pred CCCceee
Q 012379 319 GSYPRIM 325 (465)
Q Consensus 319 GS~SkI~ 325 (465)
|.|+.|.
T Consensus 754 ~~~~~i~ 760 (880)
T PRK02224 754 DAYSHIE 760 (880)
T ss_pred CCeeEEE
Confidence 4555554
No 39
>PHA02562 46 endonuclease subunit; Provisional
Probab=93.81 E-value=1.6 Score=47.33 Aligned_cols=24 Identities=21% Similarity=0.516 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 012379 130 LDKEVDDVTRDIEAYEACLQRLEG 153 (465)
Q Consensus 130 L~~qle~~~~E~d~Y~~fL~~L~~ 153 (465)
++.++...+.+.+.|...+..++.
T Consensus 186 l~~~i~~l~~~i~~~~~~i~~~~~ 209 (562)
T PHA02562 186 LDMKIDHIQQQIKTYNKNIEEQRK 209 (562)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHH
Confidence 334444444444444445544443
No 40
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=93.71 E-value=4 Score=45.36 Aligned_cols=33 Identities=15% Similarity=0.202 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 164 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAEL 196 (465)
Q Consensus 164 l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el 196 (465)
+.+|...|..+..++.+.|.+||.+...+.+..
T Consensus 204 l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~ 236 (546)
T PF07888_consen 204 LKEERESLKEQLAEARQRIRELEEDIKTLTQKE 236 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445555555555555444444333
No 41
>PRK02224 chromosome segregation protein; Provisional
Probab=93.67 E-value=1.7 Score=49.96 Aligned_cols=28 Identities=14% Similarity=0.051 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012379 224 LIAHQEERDAISSKIEVSQAHLELLKRT 251 (465)
Q Consensus 224 l~~~~~e~~sl~~q~~~~~~~LdkL~kt 251 (465)
+.+.+++...+...+......++.|...
T Consensus 594 ~~~~~~~i~~~~~~~~~~~~~~~~l~~~ 621 (880)
T PRK02224 594 IRTLLAAIADAEDEIERLREKREALAEL 621 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444433
No 42
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=93.60 E-value=2.6 Score=41.96 Aligned_cols=43 Identities=12% Similarity=0.156 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 164 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 206 (465)
Q Consensus 164 l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L 206 (465)
+.+|...|..|.....++|.++......++..|+.++.+..+.
T Consensus 37 ~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~ 79 (230)
T PF10146_consen 37 YRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKR 79 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555555555554444333
No 43
>PRK10884 SH3 domain-containing protein; Provisional
Probab=93.25 E-value=2.2 Score=41.67 Aligned_cols=80 Identities=10% Similarity=0.140 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 126 LSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKR 205 (465)
Q Consensus 126 Lle~L~~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~ 205 (465)
.+..+++|++.++.+.+.-..-.+.. ..++...+...+.+..+|.++..+|.++.+.+.+++..++.+..+
T Consensus 94 rlp~le~el~~l~~~l~~~~~~~~~~---------~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~ 164 (206)
T PRK10884 94 RVPDLENQVKTLTDKLNNIDNTWNQR---------TAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDD 164 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777777665544422221110 122333334444445555555556666666666666666666555
Q ss_pred HHHHHHHHH
Q 012379 206 FKELEERYW 214 (465)
Q Consensus 206 L~~~E~~~w 214 (465)
+++.+..-|
T Consensus 165 ~~~~~~~~w 173 (206)
T PRK10884 165 KQRTIIMQW 173 (206)
T ss_pred HHHHHHHHH
Confidence 555444333
No 44
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=93.22 E-value=8.7 Score=37.85 Aligned_cols=83 Identities=20% Similarity=0.316 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 166 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHL 245 (465)
Q Consensus 166 ~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~L 245 (465)
..+...+.--..+...+.+|+.+...+...|..++.......+.|..|=..+..+..++.+.....+....+.......+
T Consensus 127 ~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~i 206 (237)
T PF00261_consen 127 QELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEI 206 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556666777777777777777777777666666666666666666666666666555555555555555555
Q ss_pred HHH
Q 012379 246 ELL 248 (465)
Q Consensus 246 dkL 248 (465)
+.|
T Consensus 207 d~l 209 (237)
T PF00261_consen 207 DRL 209 (237)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 45
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=93.21 E-value=3.8 Score=45.09 Aligned_cols=123 Identities=11% Similarity=0.118 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 138 TRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEF 217 (465)
Q Consensus 138 ~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~ 217 (465)
++|-..|--|+++|..-... ...+.++++..-+|..++.+++..|+.+...++.+++.+.-|.+.+++.=..|-..-
T Consensus 194 ~keq~~y~~~~KelrdtN~q---~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~ 270 (596)
T KOG4360|consen 194 EKEQQLYGDCVKELRDTNTQ---ARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQ 270 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 34444555555555321100 112234444444455555555555555555555555555544444544444444444
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeeec
Q 012379 218 NNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHD 263 (465)
Q Consensus 218 n~~q~ql~~~~~e~~sl~~q~~~~~~~LdkL~ktNV~Nd~F~I~hd 263 (465)
..++.++.+.+|+-......+.-++..|..||.+...+....=.|+
T Consensus 271 ~ql~aE~~EleDkyAE~m~~~~EaeeELk~lrs~~~p~~~s~~~~~ 316 (596)
T KOG4360|consen 271 RQLTAELEELEDKYAECMQMLHEAEEELKCLRSCDAPKLISQEALS 316 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHHHHH
Confidence 4455556666666666667778888889999988888776654443
No 46
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.20 E-value=5.5 Score=44.34 Aligned_cols=16 Identities=13% Similarity=-0.047 Sum_probs=8.1
Q ss_pred cccccccccccccccc
Q 012379 11 SVLGSTRMDNSFVVLP 26 (465)
Q Consensus 11 ~~~~~~~~d~s~~~l~ 26 (465)
.+.++++.+..+-|.+
T Consensus 15 t~~p~~~i~P~~~v~~ 30 (581)
T KOG0995|consen 15 TGTPSGGINPTKRVTT 30 (581)
T ss_pred ccCCCCCCCCCCCCCC
Confidence 3444555566554443
No 47
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=93.14 E-value=3.5 Score=42.53 Aligned_cols=47 Identities=13% Similarity=0.145 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCCceeeeecCCeeeeccccCCC
Q 012379 229 EERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGR 276 (465)
Q Consensus 229 ~e~~sl~~q~~~~~~~LdkL~ktNV~Nd~F~I~hdG~fGTINGlRLGr 276 (465)
+++..+..++..++.+++.++.. .-+.+-.=-.||...+++-...|.
T Consensus 246 ~~l~~~~~~l~~~~~~l~~~~~~-l~~~~i~AP~dG~V~~~~~~~~G~ 292 (423)
T TIGR01843 246 EELTEAQARLAELRERLNKARDR-LQRLIIRSPVDGTVQSLKVHTVGG 292 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhhcEEECCCCcEEEEEEEEccCc
Confidence 34455556666666666654431 111112223477776666555665
No 48
>PRK04863 mukB cell division protein MukB; Provisional
Probab=93.00 E-value=3.6 Score=50.71 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 012379 128 DKLDKEVDDVTRDIEAYEACLQ 149 (465)
Q Consensus 128 e~L~~qle~~~~E~d~Y~~fL~ 149 (465)
..++.++..+++++..+..+++
T Consensus 317 ~ELe~rL~kLEkQaEkA~kyle 338 (1486)
T PRK04863 317 AELNEAESDLEQDYQAASDHLN 338 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555555444443
No 49
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=92.97 E-value=4.3 Score=45.51 Aligned_cols=89 Identities=20% Similarity=0.271 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--HHhHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 165 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEE-RYWQ--EFNNFQFQLIAHQEERDAISSKIEVS 241 (465)
Q Consensus 165 ~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~-~~w~--e~n~~q~ql~~~~~e~~sl~~q~~~~ 241 (465)
.+++.+++..-++|..+...|+.+.+++++++..|+.+...+...++ +.|+ ++..++.....++.++..-....+..
T Consensus 421 ~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L 500 (652)
T COG2433 421 EKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEEL 500 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555566666666666666666666666666666643322 3333 22333333333333333333344444
Q ss_pred HHHHHHHhhccc
Q 012379 242 QAHLELLKRTNV 253 (465)
Q Consensus 242 ~~~LdkL~ktNV 253 (465)
...|.+|++.+-
T Consensus 501 ~~~l~~l~k~~~ 512 (652)
T COG2433 501 ERKLAELRKMRK 512 (652)
T ss_pred HHHHHHHHHHHh
Confidence 455555555443
No 50
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=92.96 E-value=6 Score=38.05 Aligned_cols=67 Identities=31% Similarity=0.399 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 175 ERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLEL 247 (465)
Q Consensus 175 E~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ldk 247 (465)
..++..++..|+++..++..++.+++.+.+.++..+++. .+.....+++|.+-++.+..+..++|++
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~------~~~~~k~~~~ei~~lk~~~~ql~~~l~~ 188 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEEL------RQEEEKKHQEEIDFLKKQNQQLKAQLEQ 188 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445666666677777777766666666555554333221 1122233455555555555555555543
No 51
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=92.90 E-value=0.64 Score=46.24 Aligned_cols=73 Identities=19% Similarity=0.277 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 012379 163 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAIS 235 (465)
Q Consensus 163 ~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~ 235 (465)
++...++.+.+|...|..+++++|.+.++++..|+.++.|...|++.=+..--++..++..+.++.+.....+
T Consensus 139 e~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~El~e 211 (290)
T COG4026 139 ELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVELPE 211 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccccchH
Confidence 3344455667788889999999999999999999999999988887777777788888888777766654443
No 52
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=92.84 E-value=7.5 Score=40.15 Aligned_cols=29 Identities=17% Similarity=0.366 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012379 124 RVLSDKLDKEVDDVTRDIEAYEACLQRLE 152 (465)
Q Consensus 124 d~Lle~L~~qle~~~~E~d~Y~~fL~~L~ 152 (465)
+.|.+.|+..++.+..|.......+..+.
T Consensus 148 ~gl~~~L~~~~~~L~~D~~~L~~~~~~l~ 176 (325)
T PF08317_consen 148 EGLKEGLEENLELLQEDYAKLDKQLEQLD 176 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666666677777777777666666554
No 53
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=92.81 E-value=9.3 Score=39.42 Aligned_cols=22 Identities=14% Similarity=0.219 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 012379 128 DKLDKEVDDVTRDIEAYEACLQ 149 (465)
Q Consensus 128 e~L~~qle~~~~E~d~Y~~fL~ 149 (465)
..++.++..++.+...+..+++
T Consensus 84 ~~l~~~~~~l~a~~~~l~~~~~ 105 (423)
T TIGR01843 84 AELESQVLRLEAEVARLRAEAD 105 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 3455555555555555555544
No 54
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=92.80 E-value=8.1 Score=35.83 Aligned_cols=45 Identities=18% Similarity=0.318 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 166 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELE 210 (465)
Q Consensus 166 ~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E 210 (465)
.++..+-.+.+.|..+|..+-+++..+.+++...+.+...|+...
T Consensus 59 ~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~ 103 (140)
T PF10473_consen 59 EELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLN 103 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444555555666666666666666666666655555555443
No 55
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.74 E-value=9 Score=42.73 Aligned_cols=31 Identities=10% Similarity=0.304 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 012379 124 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGE 154 (465)
Q Consensus 124 d~Lle~L~~qle~~~~E~d~Y~~fL~~L~~~ 154 (465)
..-++-|.+....++.|..-|+.++..++..
T Consensus 258 ~~~~eslre~~~~L~~D~nK~~~y~~~~~~k 288 (581)
T KOG0995|consen 258 PGKEESLREKKARLQDDVNKFQAYVSQMKSK 288 (581)
T ss_pred cchHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 3456677888888888999999998877644
No 56
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=92.63 E-value=3 Score=46.22 Aligned_cols=56 Identities=14% Similarity=0.223 Sum_probs=34.6
Q ss_pred cchhHHHHHHHHHh-hc--CCcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 94 FHSTITVLKRAFEI-AT--SQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRL 151 (465)
Q Consensus 94 ls~~i~~l~~lFdI-lS--s~s~iDhPLC~eC~d~Lle~L~~qle~~~~E~d~Y~~fL~~L 151 (465)
+..+|..+.+-..= +. +..+++. ..+=.+.+-+.++.=++..++|..++....+..
T Consensus 254 i~~~i~~l~~~i~~~~~~l~~l~l~~--~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~ 312 (569)
T PRK04778 254 IEKEIQDLKEQIDENLALLEELDLDE--AEEKNEEIQERIDQLYDILEREVKARKYVEKNS 312 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcChHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56666665554322 11 2233433 666677788888888888888888877555433
No 57
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=92.55 E-value=6.1 Score=42.33 Aligned_cols=35 Identities=14% Similarity=0.371 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 173 EEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 207 (465)
Q Consensus 173 ~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~ 207 (465)
+.-.+|..+|..|-.++.+++++...|..+.+.|.
T Consensus 144 ~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ 178 (499)
T COG4372 144 KQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQ 178 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444455555555544444444443
No 58
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=92.29 E-value=5.3 Score=42.86 Aligned_cols=26 Identities=15% Similarity=0.452 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 012379 128 DKLDKEVDDVTRDIEAYEACLQRLEG 153 (465)
Q Consensus 128 e~L~~qle~~~~E~d~Y~~fL~~L~~ 153 (465)
+.++.++..++.+...|...++.+++
T Consensus 175 ~~~~~~i~~~~~~~~~~~~~~~~~~~ 200 (457)
T TIGR01000 175 AQLDQQISKTDQKLQDYQALKNAISN 200 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33455555555566666665555543
No 59
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=92.18 E-value=7.4 Score=37.74 Aligned_cols=16 Identities=6% Similarity=0.441 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 012379 128 DKLDKEVDDVTRDIEA 143 (465)
Q Consensus 128 e~L~~qle~~~~E~d~ 143 (465)
..++.+++++..|...
T Consensus 22 ~elq~~l~~l~~ENk~ 37 (194)
T PF15619_consen 22 AELQRKLQELRKENKT 37 (194)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3345555555555444
No 60
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.15 E-value=5.7 Score=44.25 Aligned_cols=31 Identities=19% Similarity=0.212 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 164 FLKEKLKIEEEERKLEAAIEETEKQNAEVNA 194 (465)
Q Consensus 164 l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~ 194 (465)
+..|+...+.-|.+|..+..+||.|.--+.+
T Consensus 154 lr~elKe~KfRE~RllseYSELEEENIsLQK 184 (772)
T KOG0999|consen 154 LRDELKEYKFREARLLSEYSELEEENISLQK 184 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 4456666677777777777777665544433
No 61
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=92.14 E-value=1.1 Score=42.87 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 127 SDKLDKEVDDVTRDIEAYEACLQR 150 (465)
Q Consensus 127 le~L~~qle~~~~E~d~Y~~fL~~ 150 (465)
+-.+..++.++.+.+.....-|..
T Consensus 76 ~~~l~~ELael~r~~~el~~~L~~ 99 (194)
T PF08614_consen 76 LAKLQEELAELYRSKGELAQQLVE 99 (194)
T ss_dssp ------------------------
T ss_pred cccccccccccccccccccccccc
Confidence 344666666666665554444443
No 62
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=92.06 E-value=8.9 Score=42.73 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=11.4
Q ss_pred CCCccchhHHHHHHHHHhhcC
Q 012379 90 NNSGFHSTITVLKRAFEIATS 110 (465)
Q Consensus 90 ~~~~ls~~i~~l~~lFdIlSs 110 (465)
.|..|...|+.+...|..=++
T Consensus 64 qN~~L~~di~~lr~~~~~~ts 84 (546)
T KOG0977|consen 64 QNRKLEHDINLLRGVVGRETS 84 (546)
T ss_pred HHHHHHHHHHHHHhhccCCCc
Confidence 355566666666655544333
No 63
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=92.01 E-value=6.8 Score=46.47 Aligned_cols=113 Identities=16% Similarity=0.232 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 127 SDKLDKEVDDVTRDIEAYEACLQRLEGEARD-VLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKR 205 (465)
Q Consensus 127 le~L~~qle~~~~E~d~Y~~fL~~L~~~~~~-~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~ 205 (465)
.+.+..++++.+.|.+++..-++.+...-.. ......+.+++++++.....-..+|+.++.+..++..+|+.-+.-..+
T Consensus 443 ~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~ 522 (1041)
T KOG0243|consen 443 KKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQ 522 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666666555432110 001123445556666666666667777777777777776666666666
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 012379 206 FKELEERYWQEFNNFQFQLIAHQEERDAISSKIE 239 (465)
Q Consensus 206 L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~ 239 (465)
++..|...-+.-..++..+...+++..++-.+++
T Consensus 523 ~~~se~~l~~~a~~l~~~~~~s~~d~s~l~~kld 556 (1041)
T KOG0243|consen 523 QEKSEEKLVDRATKLRRSLEESQDDLSSLFEKLD 556 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7777776666667777777777777666654433
No 64
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=91.99 E-value=4.7 Score=40.51 Aligned_cols=103 Identities=26% Similarity=0.388 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH---HHH----HHHHHHHhHHHHHHHHHHHHHHH
Q 012379 162 ADFLKEKLKIEEEERKLEAAIEETEK-QNAEVNAELKELELKSKRFK---ELE----ERYWQEFNNFQFQLIAHQEERDA 233 (465)
Q Consensus 162 e~l~~e~~~Le~EE~~L~~eL~~LE~-e~~~l~~el~~le~e~~~L~---~~E----~~~w~e~n~~q~ql~~~~~e~~s 233 (465)
+.+..|+++--.+-+.|..++..+++ +..-++.+++.|..+.++|+ ++. ..|=.+.+.+|..+..
T Consensus 160 d~l~~eLqkr~~~v~~l~~q~~k~~~~qv~~in~qlErLRL~krrlQl~g~Ld~~~q~~~~ae~seLq~r~~~------- 232 (289)
T COG4985 160 DPLERELQKRLLEVETLRDQVDKMVEQQVRVINSQLERLRLEKRRLQLNGQLDDEFQQHYVAEKSELQKRLAQ------- 232 (289)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHH-------
Confidence 45667777766666677777776654 44457777777766666553 222 2333334444444444
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCceeeeecCCeeeeccccCCCCCCCCCChHHHHHHH
Q 012379 234 ISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAW 291 (465)
Q Consensus 234 l~~q~~~~~~~LdkL~ktNV~Nd~F~I~hdG~fGTINGlRLGrlp~~~V~W~EINAAw 291 (465)
.+.+|+-|+. -+|.-|-.+.|-. |+ .++|+-.|||-||
T Consensus 233 -------l~~~L~~L~~--e~~r~~l~~~Dm~---------G~--~~~vpLsei~~aw 270 (289)
T COG4985 233 -------LQTELDALRA--ELERQFLYLVDMQ---------GE--TVSVPLSEILDAW 270 (289)
T ss_pred -------HHHHHHHHhh--hhhhceEEEEccC---------CC--EeeccHHHHHHhh
Confidence 4444444432 2455677777743 22 2578999999998
No 65
>PRK10884 SH3 domain-containing protein; Provisional
Probab=91.94 E-value=3.9 Score=40.05 Aligned_cols=76 Identities=12% Similarity=0.149 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 167 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLE 246 (465)
Q Consensus 167 e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld 246 (465)
.+.++++|-.++.++|.++..+..+..+ +++.+..+.+.+.. +++.+..++.+++..+.++.+.+..+++
T Consensus 94 rlp~le~el~~l~~~l~~~~~~~~~~~~---~l~~~~~~~~~~~~-------~L~~~n~~L~~~l~~~~~~~~~l~~~~~ 163 (206)
T PRK10884 94 RVPDLENQVKTLTDKLNNIDNTWNQRTA---EMQQKVAQSDSVIN-------GLKEENQKLKNQLIVAQKKVDAANLQLD 163 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555544332222 22333223332222 2333333334444445555555555666
Q ss_pred HHhhcc
Q 012379 247 LLKRTN 252 (465)
Q Consensus 247 kL~ktN 252 (465)
.+++..
T Consensus 164 ~~~~~~ 169 (206)
T PRK10884 164 DKQRTI 169 (206)
T ss_pred HHHHHH
Confidence 666644
No 66
>PRK04863 mukB cell division protein MukB; Provisional
Probab=91.84 E-value=3.9 Score=50.44 Aligned_cols=34 Identities=24% Similarity=0.285 Sum_probs=18.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012379 217 FNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 250 (465)
Q Consensus 217 ~n~~q~ql~~~~~e~~sl~~q~~~~~~~LdkL~k 250 (465)
+++|.-++.+.+.++..++.++..+...++.+++
T Consensus 444 LenF~aklee~e~qL~elE~kL~~lea~leql~~ 477 (1486)
T PRK04863 444 LEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQ 477 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555544
No 67
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=91.83 E-value=12 Score=36.01 Aligned_cols=97 Identities=22% Similarity=0.363 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcccc----cCCCHHHHHHHHHHHHHHHHH----------HHHHHHHHH
Q 012379 124 RVLSDKLDKEVDDVTRDIEAYEACLQRL---EGEAR----DVLSEADFLKEKLKIEEEERK----------LEAAIEETE 186 (465)
Q Consensus 124 d~Lle~L~~qle~~~~E~d~Y~~fL~~L---~~~~~----~~~~ee~l~~e~~~Le~EE~~----------L~~eL~~LE 186 (465)
..|+..|+.++.+-.+-|..+..-+..- ..... +.....++..-+.+|++|..+ |..+|+..-
T Consensus 15 a~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~ 94 (182)
T PF15035_consen 15 AQLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQRSEELAQVNALLREQLEQAR 94 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3577888888888777777777666211 10000 001123444455556555544 666777777
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhHH
Q 012379 187 KQNAEVNAELKELELKSKR----FKELEERYWQEFNNF 220 (465)
Q Consensus 187 ~e~~~l~~el~~le~e~~~----L~~~E~~~w~e~n~~ 220 (465)
.....|..+|..+..+... |...|..||.+-..|
T Consensus 95 ~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~~~ 132 (182)
T PF15035_consen 95 KANEALQEDLQKLTQDWERLRDELEQKEAEWREEEENF 132 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888877655554 334444444443333
No 68
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=91.80 E-value=14 Score=42.27 Aligned_cols=51 Identities=20% Similarity=0.299 Sum_probs=36.9
Q ss_pred HHHHhhcCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 012379 103 RAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEA 155 (465)
Q Consensus 103 ~lFdIlSs~s~iDhPLC~eC~d~Lle~L~~qle~~~~E~d~Y~~fL~~L~~~~ 155 (465)
+.|-.-+..+.| .|+-.|-...+.. +++++..+.+|||+.++-.+.|+++.
T Consensus 389 e~~~~k~~~s~~-ssl~~e~~QRva~-lEkKvqa~~kERDalr~e~kslk~el 439 (961)
T KOG4673|consen 389 EDLKRKSNESEV-SSLREEYHQRVAT-LEKKVQALTKERDALRREQKSLKKEL 439 (961)
T ss_pred HHHHHHhhcccc-cchHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 334444444544 4677777777665 89999999999999999888776553
No 69
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=91.66 E-value=11 Score=34.78 Aligned_cols=30 Identities=27% Similarity=0.299 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012379 220 FQFQLIAHQEERDAISSKIEVSQAHLELLK 249 (465)
Q Consensus 220 ~q~ql~~~~~e~~sl~~q~~~~~~~LdkL~ 249 (465)
|.++...+..+++..+.+|+-...++..++
T Consensus 113 ~eRkv~~le~~~~~~E~k~eel~~k~~~~k 142 (143)
T PF12718_consen 113 FERKVKALEQERDQWEEKYEELEEKYKEAK 142 (143)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhc
Confidence 344444555555566666666555555443
No 70
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.65 E-value=7.4 Score=43.41 Aligned_cols=55 Identities=22% Similarity=0.400 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 012379 169 LKIEEEERKLEAAIEETEKQNAE--------------VNAELKELELKSKRFKELEERYWQEFNNFQFQ 223 (465)
Q Consensus 169 ~~Le~EE~~L~~eL~~LE~e~~~--------------l~~el~~le~e~~~L~~~E~~~w~e~n~~q~q 223 (465)
.+|+.|.+.++++|.....|.+. ++.+...|..++++++..|.+...+|+.++-+
T Consensus 110 ~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEE 178 (772)
T KOG0999|consen 110 LELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEE 178 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555555555544444333 44556667777777788888888888877644
No 71
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=91.60 E-value=4.7 Score=47.45 Aligned_cols=174 Identities=21% Similarity=0.311 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 012379 162 ADFLKEKLKIEEEERKLEAAIEETEKQNA-------EVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAI 234 (465)
Q Consensus 162 e~l~~e~~~Le~EE~~L~~eL~~LE~e~~-------~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl 234 (465)
+.+..++..++.+..+...++++++.... +.+++...+..+..++...-+..|++-+.++..+...
T Consensus 414 ~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~------- 486 (1200)
T KOG0964|consen 414 NILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANL------- 486 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 34555666666666665566555555444 4555555556666677777778899888887666544
Q ss_pred HHHHHHHHHHHHHHhhcccCCCceeee-------ecCCeeeeccccC-------------C-CCCCCCCChHHHHHHHHH
Q 012379 235 SSKIEVSQAHLELLKRTNVLNDAFPIW-------HDGEFGTINNFRL-------------G-RLPKIPVEWDEINAAWGQ 293 (465)
Q Consensus 235 ~~q~~~~~~~LdkL~ktNV~Nd~F~I~-------hdG~fGTINGlRL-------------G-rlp~~~V~W~EINAAwGQ 293 (465)
+.-+..++.+|...-..+|+|-.=.|. ..|.|||.-.|== | +|=++-|+=+||-
T Consensus 487 ~~dl~~~~~~L~~~~~r~v~nGi~~v~~I~e~~k~ngv~G~v~eL~~v~~~f~tavEvtaGNsLF~iVVdndevA----- 561 (1200)
T KOG0964|consen 487 EEDLSRAEKNLRATMNRSVANGIDSVRKIKEELKPNGVFGTVYELIKVPNKFKTAVEVTAGNSLFNIVVDNDEVA----- 561 (1200)
T ss_pred HHHHHHHHHHHHHhccchhhhhhHHHHHHHHHhcccccceehhhhhcCCHHHHhHHhhhcccceEEEEecccHHH-----
Confidence 444556666666666666666432211 4677777543210 0 1223567778872
Q ss_pred HHHHHHHHHhhcCCCCCCceeeeecC--CCceeecc-CCceeecccCCCCccccchhHHHHHHH
Q 012379 294 ACLLLHTMCQYFRPKFPYRIKIIPMG--SYPRIMDS-NNNTYELFGPVNLFWSTRYDKAMTLFL 354 (465)
Q Consensus 294 ~~LLL~tla~~l~~~f~~~ykLvPmG--S~SkI~~~-~~~~~~Lyg~~~lf~~~kFD~AM~afL 354 (465)
...|..+- ++ ++. +..+.|+- +++.+.-. +....||-. .+=.+.+||+|+.+..
T Consensus 562 -TkIl~~~n-~m--~~G-rVTF~PLNrl~~r~v~yp~~sdaiPli~--kl~y~p~fdka~k~Vf 618 (1200)
T KOG0964|consen 562 -TKILRKLN-KM--KGG-RVTFMPLNRLKARDVEYPKDSDAIPLIS--KLRYEPQFDKALKHVF 618 (1200)
T ss_pred -HHHHHHHH-hc--cCC-eeEEeecccCchhhccCCCCCCccchHH--HhCcchhhHHHHHHHh
Confidence 33333332 33 445 78899997 44333211 223344432 1224678999887654
No 72
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=91.54 E-value=7 Score=40.51 Aligned_cols=74 Identities=15% Similarity=0.232 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 129 KLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKS 203 (465)
Q Consensus 129 ~L~~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~ 203 (465)
.|-+.-+++.++--.|..-|+++.... ..++..++...+.++++........|++++++.+.+..+|..++...
T Consensus 38 ~~yQ~~EQAr~~A~~fA~~ld~~~~kl-~~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~ 111 (301)
T PF06120_consen 38 YFYQNAEQARQEAIEFADSLDELKEKL-KEMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQL 111 (301)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888889999999887543 24677777777777777777777777777777777777776655443
No 73
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=91.49 E-value=5.9 Score=44.51 Aligned_cols=67 Identities=19% Similarity=0.227 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 130 LDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSK 204 (465)
Q Consensus 130 L~~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~ 204 (465)
|+. ++.+..+.+.|..-.+ ++. ...++.+++.+++.+.+++..+++.++.+.+.+++++.+++.+..
T Consensus 181 l~~-~~~L~~dl~~~~~~~~---~~~----~~~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~ 247 (650)
T TIGR03185 181 LDL-IDRLAGDLTNVLRRRK---KSE----LPSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLE 247 (650)
T ss_pred cHH-HHHHHHHHHHHHHHHH---hcc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 5556666665543322 111 112344455555555555555555555555555555555554433
No 74
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=91.47 E-value=13 Score=35.97 Aligned_cols=56 Identities=21% Similarity=0.262 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 012379 184 ETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIE 239 (465)
Q Consensus 184 ~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~ 239 (465)
++|.+..+++..|.+++.+...+...-+..+.+.+.++-......++...++.+++
T Consensus 128 ~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~ 183 (190)
T PF05266_consen 128 ELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQ 183 (190)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433445556666666666555555555555444
No 75
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=91.44 E-value=5.8 Score=41.39 Aligned_cols=125 Identities=18% Similarity=0.236 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----cCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 123 MRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEAR-----DVLS-EADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAEL 196 (465)
Q Consensus 123 ~d~Lle~L~~qle~~~~E~d~Y~~fL~~L~~~~~-----~~~~-ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el 196 (465)
-..-++.|.+++.+++.|++.++.-+.+.+.... ..++ .+++..+++++.+.-..|+.++..+-.|.+++..|.
T Consensus 84 L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ER 163 (319)
T PF09789_consen 84 LKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTER 163 (319)
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445678999999999999999988876653221 1122 255667777777888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHH--------------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 197 KELELKSKRFKELEE--------------RYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLEL 247 (465)
Q Consensus 197 ~~le~e~~~L~~~E~--------------~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ldk 247 (465)
...+.+..+|+.+=. ...-+-.-++-++...++|...+...+.-=..-|++
T Consensus 164 D~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le~ 228 (319)
T PF09789_consen 164 DAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQTINKYKSALER 228 (319)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888777777743311 111222223445777788888777665555556674
No 76
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=91.43 E-value=5.9 Score=35.74 Aligned_cols=32 Identities=22% Similarity=0.401 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 012379 124 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGEA 155 (465)
Q Consensus 124 d~Lle~L~~qle~~~~E~d~Y~~fL~~L~~~~ 155 (465)
-.+++.|..++...+.|+..++.-+.+|..+.
T Consensus 15 ~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r 46 (120)
T PF12325_consen 15 VQLVERLQSQLRRLEGELASLQEELARLEAER 46 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999988887543
No 77
>PF15285 BH3: Beclin-1 BH3 domain, Bcl-2-interacting; PDB: 3BL2_C 2P1L_H 3DVU_C 2PON_A.
Probab=91.35 E-value=0.086 Score=35.08 Aligned_cols=19 Identities=21% Similarity=0.384 Sum_probs=16.1
Q ss_pred ccchhHHHHHHHHHhhcCC
Q 012379 93 GFHSTITVLKRAFEIATSQ 111 (465)
Q Consensus 93 ~ls~~i~~l~~lFdIlSs~ 111 (465)
.+|+|+++...+|||+|+|
T Consensus 7 ~ls~rlkvtg~lfdimsGq 25 (25)
T PF15285_consen 7 NLSRRLKVTGDLFDIMSGQ 25 (25)
T ss_dssp HHHHHHHHHHHHHCCTT--
T ss_pred ccchhheecccccccccCC
Confidence 3999999999999999986
No 78
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=91.21 E-value=18 Score=36.43 Aligned_cols=76 Identities=21% Similarity=0.278 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 170 KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELL 248 (465)
Q Consensus 170 ~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~LdkL 248 (465)
.+..|-.++...+..|+.+...+......|+..+ .+.|.+|=.+...++..+...+.++..+..++.........|
T Consensus 213 ~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l---~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~L 288 (312)
T PF00038_consen 213 SAKEELKELRRQIQSLQAELESLRAKNASLERQL---RELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQEL 288 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhHHHHHHhhhhHhhhhhhccccchhhhhhhH---HHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555555444444444444332 223333444444555555555555555555554444444333
No 79
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=91.04 E-value=0.91 Score=40.11 Aligned_cols=15 Identities=20% Similarity=0.580 Sum_probs=12.2
Q ss_pred cCCCceeeeecCCeee
Q 012379 253 VLNDAFPIWHDGEFGT 268 (465)
Q Consensus 253 V~Nd~F~I~hdG~fGT 268 (465)
+|++=|||-| -.||.
T Consensus 81 LY~EGFHICn-~~yG~ 95 (107)
T PF06156_consen 81 LYQEGFHICN-VHYGS 95 (107)
T ss_pred HHhcCeeeCc-HHhCC
Confidence 5999999977 66765
No 80
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=90.92 E-value=11 Score=45.35 Aligned_cols=15 Identities=27% Similarity=0.173 Sum_probs=12.0
Q ss_pred ccchhHHHHHHHHHH
Q 012379 343 STRYDKAMTLFLSCL 357 (465)
Q Consensus 343 ~~kFD~AM~afL~cl 357 (465)
.+|||.-|.+|--+-
T Consensus 1134 k~RldEFm~gf~~Is 1148 (1293)
T KOG0996|consen 1134 KRRLDEFMAGFNIIS 1148 (1293)
T ss_pred HHHHHHHHHHHHHHH
Confidence 478999999987763
No 81
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=90.85 E-value=15 Score=38.37 Aligned_cols=15 Identities=13% Similarity=0.259 Sum_probs=6.9
Q ss_pred cchhHHHHHHHHHhh
Q 012379 94 FHSTITVLKRAFEIA 108 (465)
Q Consensus 94 ls~~i~~l~~lFdIl 108 (465)
+..++..|..=-.+|
T Consensus 25 l~~~~~sL~qen~~L 39 (310)
T PF09755_consen 25 LRKRIESLQQENRVL 39 (310)
T ss_pred HHHHHHHHHHHhHHH
Confidence 555555444433333
No 82
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=90.76 E-value=8.1 Score=44.85 Aligned_cols=147 Identities=16% Similarity=0.186 Sum_probs=75.3
Q ss_pred HHHHHHHhhcCCcccCCc--chHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHhcccccCCCHHHHH--
Q 012379 100 VLKRAFEIATSQTQVEQP--LCLECMRVLSDKLDKEVDDVTRDIEAY----------EACLQRLEGEARDVLSEADFL-- 165 (465)
Q Consensus 100 ~l~~lFdIlSs~s~iDhP--LC~eC~d~Lle~L~~qle~~~~E~d~Y----------~~fL~~L~~~~~~~~~ee~l~-- 165 (465)
.|+.+...||..-.+-+| .|..-.......+..=+..+.+|.+.- ...++++..+. +.++..
T Consensus 520 ~L~~m~~~L~~~~e~~dp~~~r~~~~~~~~~~v~~~~~~v~~E~krilaRk~liE~rKe~~E~~~~~r----e~Eea~~q 595 (988)
T KOG2072|consen 520 QLTAMAESLSKVVEELDPVIIRNSRAKKKEGAVTNYLKNVDKEHKRILARKSLIEKRKEDLEKQNVER----EAEEAQEQ 595 (988)
T ss_pred HHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhHHHHHHHHH----HHHHHHHH
Confidence 345666677776677778 488777766665555555555555442 23333332211 111111
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH-------------HHHHHHhHHHHHHHHH
Q 012379 166 --KEKLKIEEEERKLEAAIEETEKQNAEVNAE---LKELELKSKRFKELEE-------------RYWQEFNNFQFQLIAH 227 (465)
Q Consensus 166 --~e~~~Le~EE~~L~~eL~~LE~e~~~l~~e---l~~le~e~~~L~~~E~-------------~~w~e~n~~q~ql~~~ 227 (465)
++.+.-+.|+++|.+++.+=|+++...+.+ .+.+++....+.+-|. +-..--.-.+.+..++
T Consensus 596 ~~e~~~~r~aE~kRl~ee~~Ere~~R~l~E~e~i~~k~~ke~~~~~~~te~~aK~~k~~d~ed~e~lD~d~i~~~q~eel 675 (988)
T KOG2072|consen 596 AKEQRQAREAEEKRLIEEKKEREAKRILREKEAIRKKELKERLEQLKQTEVGAKGGKEKDLEDLEKLDADQIKARQIEEL 675 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCChHHhhhcCHHHHHHHHHHHH
Confidence 111122456666666666555544433333 2222222222221110 1111112235677788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 012379 228 QEERDAISSKIEVSQAHLELLKR 250 (465)
Q Consensus 228 ~~e~~sl~~q~~~~~~~LdkL~k 250 (465)
+.++..++.++++....+|.+.+
T Consensus 676 ~Ke~kElq~rL~~q~KkiDh~ER 698 (988)
T KOG2072|consen 676 EKERKELQSRLQYQEKKIDHLER 698 (988)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHH
Confidence 88888888888888877776665
No 83
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=90.75 E-value=12 Score=33.72 Aligned_cols=43 Identities=16% Similarity=0.277 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 164 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 206 (465)
Q Consensus 164 l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L 206 (465)
+...+..++-|...+..++..++.++..+.+||-.+-.+..++
T Consensus 21 L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~ 63 (120)
T PF12325_consen 21 LQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL 63 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666666666666666666666665555444433
No 84
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.63 E-value=25 Score=37.13 Aligned_cols=55 Identities=18% Similarity=0.283 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 138 TRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKE 198 (465)
Q Consensus 138 ~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~ 198 (465)
++|.+.+..-...|+. .++++.+-.++|+.+++.|++++..|.++.+-|..-.++
T Consensus 224 eeeme~~~aeq~slkR------t~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 224 EEEMERLQAEQESLKR------TEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHHHHHHHHh------hHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3344455554444432 235555666677777777777777777777766655444
No 85
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=90.56 E-value=24 Score=38.26 Aligned_cols=10 Identities=40% Similarity=0.776 Sum_probs=5.0
Q ss_pred eeecCCeeee
Q 012379 260 IWHDGEFGTI 269 (465)
Q Consensus 260 I~hdG~fGTI 269 (465)
|+.-|+||.-
T Consensus 286 i~~t~~~~~~ 295 (420)
T COG4942 286 ISSTGGFGAL 295 (420)
T ss_pred cccccccccc
Confidence 4444555543
No 86
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=90.53 E-value=8.9 Score=42.57 Aligned_cols=71 Identities=15% Similarity=0.238 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 012379 167 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSK 237 (465)
Q Consensus 167 e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q 237 (465)
++..++++-..+...+........++..++.++..+...++.+...++...+.+...-.+..+.+..+..+
T Consensus 356 eL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~ 426 (569)
T PRK04778 356 QLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNK 426 (569)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334333333333333333334445555555555555555555555555555555544444444333333
No 87
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=90.53 E-value=5.6 Score=45.51 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 181 AIEETEKQNAEVNAELKELELKSKRF 206 (465)
Q Consensus 181 eL~~LE~e~~~l~~el~~le~e~~~L 206 (465)
...+||.|...|..|++..|++...+
T Consensus 546 r~~~lE~E~~~lr~elk~kee~~~~~ 571 (697)
T PF09726_consen 546 RRRQLESELKKLRRELKQKEEQIREL 571 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555554444444444433
No 88
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=90.47 E-value=16 Score=36.51 Aligned_cols=64 Identities=16% Similarity=0.152 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 178 LEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVS 241 (465)
Q Consensus 178 L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~ 241 (465)
+.+|.+.|..|+....++|+.+...+..|+..=++-|.+.+..+.....+.+|..-++.+++..
T Consensus 37 ~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~ 100 (230)
T PF10146_consen 37 YRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINEL 100 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666666666666666666666667777776666655555554444443333
No 89
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.45 E-value=5.7 Score=48.29 Aligned_cols=6 Identities=17% Similarity=0.429 Sum_probs=5.2
Q ss_pred eccccC
Q 012379 269 INNFRL 274 (465)
Q Consensus 269 INGlRL 274 (465)
|.++|+
T Consensus 1159 ~~~i~~ 1164 (1311)
T TIGR00606 1159 IEYIEI 1164 (1311)
T ss_pred HHHhhc
Confidence 788888
No 90
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.39 E-value=14 Score=44.98 Aligned_cols=38 Identities=18% Similarity=0.208 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 162 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKEL 199 (465)
Q Consensus 162 e~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~l 199 (465)
+++..++..++.+.+.+..++..+..+.+.+..+|..|
T Consensus 825 ~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~L 862 (1311)
T TIGR00606 825 QQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHL 862 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666555555555555555555555555555
No 91
>PRK09039 hypothetical protein; Validated
Probab=90.27 E-value=14 Score=38.75 Aligned_cols=26 Identities=12% Similarity=0.095 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 124 RVLSDKLDKEVDDVTRDIEAYEACLQ 149 (465)
Q Consensus 124 d~Lle~L~~qle~~~~E~d~Y~~fL~ 149 (465)
+.-+..+..+++.+++++..-+..+.
T Consensus 80 ~~~l~~l~~~l~~a~~~r~~Le~~~~ 105 (343)
T PRK09039 80 QDSVANLRASLSAAEAERSRLQALLA 105 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33455566666666666654444333
No 92
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=90.24 E-value=22 Score=35.80 Aligned_cols=35 Identities=23% Similarity=0.346 Sum_probs=16.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012379 215 QEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 249 (465)
Q Consensus 215 ~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~LdkL~ 249 (465)
.+.+.+..++....-.+..++++++..+.+|+.|+
T Consensus 103 ~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~ 137 (312)
T PF00038_consen 103 EELESLRKDLDEETLARVDLENQIQSLKEELEFLK 137 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444555555555554444
No 93
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=90.16 E-value=23 Score=36.95 Aligned_cols=58 Identities=33% Similarity=0.521 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC---CC-HH-----HHHHHHHHHHHHHHHHHHHHH
Q 012379 126 LSDKLDKEVDDVTRDIEAYEACLQRLEGEARDV---LS-EA-----DFLKEKLKIEEEERKLEAAIE 183 (465)
Q Consensus 126 Lle~L~~qle~~~~E~d~Y~~fL~~L~~~~~~~---~~-ee-----~l~~e~~~Le~EE~~L~~eL~ 183 (465)
++..|.++++.+++|...|...|.+|..+..+- +. +. -+.+...+|+.|.+.|...|.
T Consensus 136 ~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~ 202 (310)
T PF09755_consen 136 LVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLE 202 (310)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 567788888888888888888888887654221 10 11 134555667777777777665
No 94
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=90.11 E-value=17 Score=37.40 Aligned_cols=113 Identities=18% Similarity=0.279 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc----ccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 127 SDKLDKEVDDVTRDIEAYEACLQRLEG----EARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 202 (465)
Q Consensus 127 le~L~~qle~~~~E~d~Y~~fL~~L~~----~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e 202 (465)
|++|+.|++.+.+|++.-+=-|+.|+. +...+ ++-..+...|+.|-..|....+.||+.+..+..++.--+.
T Consensus 20 IqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~---e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~- 95 (307)
T PF10481_consen 20 IQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKV---EEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKES- 95 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH---HHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHH-
Confidence 677888888888888765544554431 11100 1111222334444455555555555555555443332222
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 012379 203 SKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLND 256 (465)
Q Consensus 203 ~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~LdkL~ktNV~Nd 256 (465)
.+|-+.-++.......+.|+..+-....+|++.+..+.-.+
T Consensus 96 -------------qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~ 136 (307)
T PF10481_consen 96 -------------QVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASSGD 136 (307)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 23333344444444455566666666777888777766333
No 95
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=90.06 E-value=7.8 Score=37.05 Aligned_cols=8 Identities=25% Similarity=0.177 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 012379 225 IAHQEERD 232 (465)
Q Consensus 225 ~~~~~e~~ 232 (465)
..++.|.+
T Consensus 168 ~~l~~En~ 175 (194)
T PF08614_consen 168 RKLEEENR 175 (194)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 96
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=89.94 E-value=16 Score=46.23 Aligned_cols=37 Identities=19% Similarity=0.230 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 181 AIEETEKQNAEVNAELKELELKSKRFKELEERYWQEF 217 (465)
Q Consensus 181 eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~ 217 (465)
.+.+++.+...++.+++.|+.+...+++.....-++.
T Consensus 951 ~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kek 987 (1930)
T KOG0161|consen 951 TLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEK 987 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444445555444444443333333333
No 97
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=89.77 E-value=20 Score=34.57 Aligned_cols=127 Identities=13% Similarity=0.246 Sum_probs=58.3
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCC-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 114 VEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLS-EADFLK-EKLKIEEEERKLEAAIEETEKQNAE 191 (465)
Q Consensus 114 iDhPLC~eC~d~Lle~L~~qle~~~~E~d~Y~~fL~~L~~~~~~~~~-ee~l~~-e~~~Le~EE~~L~~eL~~LE~e~~~ 191 (465)
+..|- .=.+..|..|+..+..+.+.......--++++.+...... .++... ....|...++.|..+ +-.+...
T Consensus 21 ~EDP~--~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~---al~~k~~ 95 (221)
T PF04012_consen 21 AEDPE--KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLARE---ALQRKAD 95 (221)
T ss_pred hcCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH---HHHHHHH
Confidence 44565 5556666667777766666655555544444432210000 000100 011122222222211 1112222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 192 VNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHL 245 (465)
Q Consensus 192 l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~L 245 (465)
+..++..++.....+.....++-..+..++.++.++..++..+.++...++.+.
T Consensus 96 ~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~ 149 (221)
T PF04012_consen 96 LEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQK 149 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444445566666667777777777777766665443
No 98
>PRK01156 chromosome segregation protein; Provisional
Probab=89.76 E-value=12 Score=43.49 Aligned_cols=34 Identities=18% Similarity=0.346 Sum_probs=23.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012379 217 FNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 250 (465)
Q Consensus 217 ~n~~q~ql~~~~~e~~sl~~q~~~~~~~LdkL~k 250 (465)
++.....+..+..+...++.++......++.|++
T Consensus 411 ~~e~~~~~~~l~~~i~~l~~~i~~l~~~~~el~~ 444 (895)
T PRK01156 411 LNEINVKLQDISSKVSSLNQRIRALRENLDELSR 444 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555566677777778887777777777776664
No 99
>PRK01156 chromosome segregation protein; Provisional
Probab=89.74 E-value=12 Score=43.25 Aligned_cols=19 Identities=16% Similarity=0.349 Sum_probs=9.9
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 012379 119 CLECMRVLSDKLDKEVDDV 137 (465)
Q Consensus 119 C~eC~d~Lle~L~~qle~~ 137 (465)
|.++....+..++.++...
T Consensus 167 ~~~~~~~~~~~~~~ei~~l 185 (895)
T PRK01156 167 NYDKLKDVIDMLRAEISNI 185 (895)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555555555554444
No 100
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=89.63 E-value=23 Score=37.11 Aligned_cols=167 Identities=14% Similarity=0.237 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc-------cc---------c--CCC---H-HH-------HHHHHHHHHHHHHHHH
Q 012379 129 KLDKEVDDVTRDIEAYEACLQRLEGE-------AR---------D--VLS---E-AD-------FLKEKLKIEEEERKLE 179 (465)
Q Consensus 129 ~L~~qle~~~~E~d~Y~~fL~~L~~~-------~~---------~--~~~---e-e~-------l~~e~~~Le~EE~~L~ 179 (465)
.|-++++....|||.|..-.+.|... .. . ... + .. ..++...|..|-..|.
T Consensus 13 IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lr 92 (319)
T PF09789_consen 13 ILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELR 92 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788888888888888766665411 00 0 000 0 11 2234445667777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH------------HHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 180 AAIEETEKQNAEVNAELKELEL------------KSKRF-KELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLE 246 (465)
Q Consensus 180 ~eL~~LE~e~~~l~~el~~le~------------e~~~L-~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld 246 (465)
+.|.+++.+..-+...+...+. +..+| .++| +.+.....+++++....||...+....++-+...+
T Consensus 93 qkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLE-k~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~ 171 (319)
T PF09789_consen 93 QKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLE-KLREQIEQLERDLQSLLDEKEELVTERDAYKCKAH 171 (319)
T ss_pred HHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777776666665555431 11112 2332 35556666666666666666666666566665666
Q ss_pred HHhhcccCCCceee--eecCCeeeeccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhc
Q 012379 247 LLKRTNVLNDAFPI--WHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYF 305 (465)
Q Consensus 247 kL~ktNV~Nd~F~I--~hdG~fGTINGlRLGrlp~~~V~W~EINAAwGQ~~LLL~tla~~l 305 (465)
||..- ..+| +++..+-.|.+|-+=- ..==..|+.+-.-.-|+..+|.+|-
T Consensus 172 RLN~E-----Ln~~L~g~~~rivDIDaLi~EN----RyL~erl~q~qeE~~l~k~~i~KYK 223 (319)
T PF09789_consen 172 RLNHE-----LNYILNGDENRIVDIDALIMEN----RYLKERLKQLQEEKELLKQTINKYK 223 (319)
T ss_pred HHHHH-----HHHHhCCCCCCcccHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66321 1111 0111222333332210 1112357888888999999998763
No 101
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=89.57 E-value=4.3 Score=37.82 Aligned_cols=71 Identities=18% Similarity=0.210 Sum_probs=43.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 118 LCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEA---RDVLSEADFLKEKLKIEEEERKLEAAIEETEKQ 188 (465)
Q Consensus 118 LC~eC~d~Lle~L~~qle~~~~E~d~Y~~fL~~L~~~~---~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e 188 (465)
.+..|..-=+..|+.++.++..+........+.|+.+- ...++.+++...+..|++|-..+...|..|...
T Consensus 65 ~~~~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~ 138 (169)
T PF07106_consen 65 ELEVPSPEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSG 138 (169)
T ss_pred ccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34445555555566666666666666555555554321 123667778777777777777777777777653
No 102
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=89.26 E-value=16 Score=32.88 Aligned_cols=33 Identities=12% Similarity=0.217 Sum_probs=21.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 216 EFNNFQFQLIAHQEERDAISSKIEVSQAHLELL 248 (465)
Q Consensus 216 e~n~~q~ql~~~~~e~~sl~~q~~~~~~~LdkL 248 (465)
....++.++.+....++.|..|-....+||+.|
T Consensus 99 qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 99 QKEQLEKELSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345566666666777777777767777777654
No 103
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=89.23 E-value=22 Score=45.18 Aligned_cols=31 Identities=16% Similarity=0.289 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 172 EEEERKLEAAIEETEKQNAEVNAELKELELK 202 (465)
Q Consensus 172 e~EE~~L~~eL~~LE~e~~~l~~el~~le~e 202 (465)
+.|-..+..+|+.|+.+...++..+..|..+
T Consensus 956 ~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~ke 986 (1930)
T KOG0161|consen 956 ELEKNAAENKLKNLEEEINSLDENISKLSKE 986 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444444333
No 104
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=89.23 E-value=19 Score=39.55 Aligned_cols=26 Identities=19% Similarity=0.416 Sum_probs=15.4
Q ss_pred CCccchhHHHHHHHHHhhcCCcccCCcchHH
Q 012379 91 NSGFHSTITVLKRAFEIATSQTQVEQPLCLE 121 (465)
Q Consensus 91 ~~~ls~~i~~l~~lFdIlSs~s~iDhPLC~e 121 (465)
+.+|++|+. ..+..|| .+..||.|.+
T Consensus 153 ~f~F~~r~E--~eV~~~l---KnL~YPfl~s 178 (622)
T COG5185 153 GFGFTKRIE--NEVYQIL---KNLRYPFLES 178 (622)
T ss_pred CCCcchhhH--HHHHHHH---HhcCCchhhh
Confidence 455666664 3455555 3467787764
No 105
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=89.23 E-value=14 Score=39.07 Aligned_cols=45 Identities=27% Similarity=0.299 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 163 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 207 (465)
Q Consensus 163 ~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~ 207 (465)
++.+-+++++.-|+-+-.+++.+-.+...+.+++.+++.+.++..
T Consensus 249 ~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s 293 (359)
T PF10498_consen 249 DISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQAS 293 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566677777777777777777777777777777776665554
No 106
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=89.14 E-value=24 Score=38.05 Aligned_cols=13 Identities=15% Similarity=0.304 Sum_probs=5.9
Q ss_pred hhHHHHHHHHhhC
Q 012379 414 CNLKWALFWFVGN 426 (465)
Q Consensus 414 tNlKwlLaw~~~~ 426 (465)
..+-|||---..+
T Consensus 453 ~~f~~~lR~qad~ 465 (499)
T COG4372 453 STFGWCLRSQADT 465 (499)
T ss_pred hhHHHHHHHhcCC
Confidence 3455665433333
No 107
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=89.08 E-value=19 Score=35.08 Aligned_cols=44 Identities=16% Similarity=0.322 Sum_probs=23.3
Q ss_pred HHHHHHHhhcCC-----cccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 100 VLKRAFEIATSQ-----TQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYE 145 (465)
Q Consensus 100 ~l~~lFdIlSs~-----s~iDhPLC~eC~d~Lle~L~~qle~~~~E~d~Y~ 145 (465)
.++||++|+.++ ..+..|. .=.+.++..|+..+..+....-...
T Consensus 3 if~Rl~~iv~a~~n~~~dk~EDP~--~~l~q~irem~~~l~~ar~~lA~~~ 51 (219)
T TIGR02977 3 IFSRFADIVNSNLNALLDKAEDPE--KMIRLIIQEMEDTLVEVRTTSARTI 51 (219)
T ss_pred HHHHHHHHHHHHHHHHHHhccCHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666542 1223343 2456667777776666655544443
No 108
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=89.01 E-value=11 Score=46.11 Aligned_cols=34 Identities=9% Similarity=0.072 Sum_probs=26.1
Q ss_pred EEecCCCCchhhHHHHHHHhhHHHHHHHHhhCCc
Q 012379 395 ITQSFNKQENWTKALKYTLCNLKWALFWFVGNTN 428 (465)
Q Consensus 395 Ikl~~n~~e~WTkAlK~lLtNlKwlLaw~~~~t~ 428 (465)
+.+.-+-++.|--++-=-|+-.--|=|||+-.-.
T Consensus 608 ~df~e~v~~~~ra~IEaAL~~~GLLDA~v~p~~~ 641 (1353)
T TIGR02680 608 VDFADDVPADVRAGLEAALEAAGLLDAWVTADGT 641 (1353)
T ss_pred eecCCCCCHHHHHHHHHHHHHCCCcceeeCCCcc
Confidence 3344445789999999999999999999985433
No 109
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=88.99 E-value=17 Score=41.91 Aligned_cols=35 Identities=20% Similarity=0.214 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 165 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKEL 199 (465)
Q Consensus 165 ~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~l 199 (465)
.+++..++.-|.+|.++..+||.|.-.+.+++..|
T Consensus 82 r~e~ke~K~rE~rll~dyselEeENislQKqvs~L 116 (717)
T PF09730_consen 82 REEIKEYKFREARLLQDYSELEEENISLQKQVSVL 116 (717)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 34445555556666666666666665555555444
No 110
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=88.98 E-value=3.7 Score=45.88 Aligned_cols=84 Identities=27% Similarity=0.310 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCc
Q 012379 178 LEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDA 257 (465)
Q Consensus 178 L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~LdkL~ktNV~Nd~ 257 (465)
...||.++|..+++++.||.++..++++++++ +...|-|+..|+..+++++.+++.|+.+|--.-.
T Consensus 91 Vs~EL~ele~krqel~seI~~~n~kiEelk~~--------------i~~~q~eL~~Lk~~ieqaq~~~~El~~~n~pkl~ 156 (907)
T KOG2264|consen 91 VSLELTELEVKRQELNSEIEEINTKIEELKRL--------------IPQKQLELSALKGEIEQAQRQLEELRETNNPKLF 156 (907)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH--------------HHHhHHHHHHHHhHHHHHHHHHHHHHhhcCCcee
Confidence 34567777777778888777777666655433 3344556678889999999999999999988887
Q ss_pred eeeee--------cCCeeeeccccCC
Q 012379 258 FPIWH--------DGEFGTINNFRLG 275 (465)
Q Consensus 258 F~I~h--------dG~fGTINGlRLG 275 (465)
..|+- -.+-.-|-+.||-
T Consensus 157 LP~sllP~~~pr~l~pp~~~~~c~lh 182 (907)
T KOG2264|consen 157 LPFSLLPLQIPRELEPPSQISPCQLH 182 (907)
T ss_pred eccccCcccCcccCCCccccCcccch
Confidence 77772 1244566666664
No 111
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=88.69 E-value=13 Score=41.08 Aligned_cols=78 Identities=22% Similarity=0.297 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012379 171 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 250 (465)
Q Consensus 171 Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~LdkL~k 250 (465)
...|-+.|...|+..|++++.+..|++.+......|+++ .-.-..+++-|+....|-+.+++.++.....+++.|+.
T Consensus 439 f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDE---L~TTr~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~LK~ 515 (518)
T PF10212_consen 439 FYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDE---LETTRRNYEEQLSMMSEHLASMNEQLAKQREEIQTLKL 515 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456667777778877888887777777776665555433 44566677888888888899999999999999999984
Q ss_pred c
Q 012379 251 T 251 (465)
Q Consensus 251 t 251 (465)
.
T Consensus 516 ~ 516 (518)
T PF10212_consen 516 A 516 (518)
T ss_pred c
Confidence 3
No 112
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=88.65 E-value=20 Score=33.09 Aligned_cols=19 Identities=32% Similarity=0.358 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 012379 130 LDKEVDDVTRDIEAYEACL 148 (465)
Q Consensus 130 L~~qle~~~~E~d~Y~~fL 148 (465)
|..+.+.+..-.+.+..-+
T Consensus 5 lk~E~d~a~~r~e~~e~~~ 23 (143)
T PF12718_consen 5 LKLEADNAQDRAEELEAKV 23 (143)
T ss_pred HHHhHHHHHHHHHHHHHHH
Confidence 3334444333333333333
No 113
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=88.44 E-value=8.9 Score=43.14 Aligned_cols=78 Identities=15% Similarity=0.246 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 165 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKR--FKELEE-RYWQEFNNFQFQLIAHQEERDAISSKIEVS 241 (465)
Q Consensus 165 ~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~--L~~~E~-~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~ 241 (465)
.+..++|+.|-..|..+|++++++.+.|.+++..+..+... ....|- ..=...+.++.+|.+-....+.|+.++...
T Consensus 428 ~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l 507 (652)
T COG2433 428 EETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAEL 507 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666667777777776666666666666543331 111111 123456677888888777777777776655
Q ss_pred H
Q 012379 242 Q 242 (465)
Q Consensus 242 ~ 242 (465)
.
T Consensus 508 ~ 508 (652)
T COG2433 508 R 508 (652)
T ss_pred H
Confidence 4
No 114
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=88.34 E-value=22 Score=38.89 Aligned_cols=18 Identities=28% Similarity=0.217 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 012379 229 EERDAISSKIEVSQAHLE 246 (465)
Q Consensus 229 ~e~~sl~~q~~~~~~~Ld 246 (465)
+.+.+...++.-.+.||.
T Consensus 428 ~~~~s~d~~I~dLqEQlr 445 (493)
T KOG0804|consen 428 EALGSKDEKITDLQEQLR 445 (493)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444455555554443
No 115
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=88.28 E-value=34 Score=35.40 Aligned_cols=165 Identities=13% Similarity=0.118 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCC-HHH---HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH
Q 012379 124 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLS-EAD---FLKEKLKIEEEERKLEAAIEETEKQ-------NAEV 192 (465)
Q Consensus 124 d~Lle~L~~qle~~~~E~d~Y~~fL~~L~~~~~~~~~-ee~---l~~e~~~Le~EE~~L~~eL~~LE~e-------~~~l 192 (465)
..-++.+++|++.++++.+.-+.-|...+.+.. .++ +.. ....+..|+.+..+++.+|.++... ...+
T Consensus 169 ~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~-~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l 247 (362)
T TIGR01010 169 KDTIAFAENEVKEAEQRLNATKAELLKYQIKNK-VFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQVPSL 247 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHH
Confidence 445555666666666665555555555443321 122 111 2223344555555555555544321 1123
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeeecCCeeeecc
Q 012379 193 NAELKELELKSKRFKEL-EERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINN 271 (465)
Q Consensus 193 ~~el~~le~e~~~L~~~-E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~LdkL~ktNV~Nd~F~I~hdG~fGTING 271 (465)
++++..++.++.+.... ....=...+....++.+++.+.+..+..|+.+...++.++-.--. ....+. .|-
T Consensus 248 ~~~i~~l~~~i~~e~~~i~~~~~~~l~~~~~~~~~L~re~~~a~~~y~~~l~r~~~a~~~~~~-~~~~~~------vi~- 319 (362)
T TIGR01010 248 QARIKSLRKQIDEQRNQLSGGLGDSLNEQTADYQRLVLQNELAQQQLKAALTSLQQTRVEADR-QQLYLE------VIS- 319 (362)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hheeee------eee-
Confidence 33444444333222110 000012356666777777888888888888888888777722211 111211 111
Q ss_pred ccCCCCCCCCC-ChHHHHHHHHHHHHHHH
Q 012379 272 FRLGRLPKIPV-EWDEINAAWGQACLLLH 299 (465)
Q Consensus 272 lRLGrlp~~~V-~W~EINAAwGQ~~LLL~ 299 (465)
--.+|..|+ |+.=.|.+.|-++.|+.
T Consensus 320 --~p~~P~~p~~P~~~~~l~~~~~~gl~l 346 (362)
T TIGR01010 320 --QPSLPDDALEPYRLYNILATFVILLIL 346 (362)
T ss_pred --CCCCCCCcCCChHHHHHHHHHHHHHHH
Confidence 123444444 36666777766654443
No 116
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=87.99 E-value=24 Score=33.34 Aligned_cols=65 Identities=18% Similarity=0.287 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 012379 164 FLKEKLKIEEEERKLEAAIEETEKQNAE--------VNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQ 228 (465)
Q Consensus 164 l~~e~~~Le~EE~~L~~eL~~LE~e~~~--------l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~ 228 (465)
..++.++|+..++.....|-++.+.... .=.+-..++.++.-+.+.|.+.-.-++.++..+..+.
T Consensus 46 ~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~ 118 (159)
T PF05384_consen 46 VIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLREREKQLRERRDELERRLRNLE 118 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777777777777666544322 1122233444444455666666666666665554443
No 117
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=87.84 E-value=24 Score=36.11 Aligned_cols=81 Identities=16% Similarity=0.283 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 012379 172 EEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAIS---SKIEVSQAHLELL 248 (465)
Q Consensus 172 e~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~---~q~~~~~~~LdkL 248 (465)
+.+...++.....|+.+..++.-|+..++. .++..--+|++....+..++.......+++. ..++++..-|++-
T Consensus 51 esqL~q~etrnrdl~t~nqrl~~E~e~~Ke---k~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLEra 127 (333)
T KOG1853|consen 51 ESQLDQLETRNRDLETRNQRLTTEQERNKE---KQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERA 127 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHh
Confidence 333333444444444444444443333322 2333334566666666666555444444443 4566777778887
Q ss_pred hhcccCC
Q 012379 249 KRTNVLN 255 (465)
Q Consensus 249 ~ktNV~N 255 (465)
++--||.
T Consensus 128 kRati~s 134 (333)
T KOG1853|consen 128 KRATIYS 134 (333)
T ss_pred hhhhhhh
Confidence 7766654
No 118
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=87.81 E-value=18 Score=42.95 Aligned_cols=55 Identities=13% Similarity=0.201 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCceeeeCCccceeeEEecCCCCchhhHHHH
Q 012379 348 KAMTLFLSCLKDFAEFANSKDQENNIPPDKCFKLPYKIENDKVENYSITQSFNKQENWTKALK 410 (465)
Q Consensus 348 ~AM~afL~cl~q~~~~~~~~d~~~~~~~~~~~~LPY~I~kdkI~g~SIkl~~n~~e~WTkAlK 410 (465)
.=.+||-.+=..|+.+....-|.+ .-.+.+|- .++-.+|+-|++.|+. -|...|-
T Consensus 1027 ~L~kaw~~VN~dFG~IFs~LLPga----~AkL~Ppe--g~~~~dGLEvkV~~G~--iWKeSL~ 1081 (1174)
T KOG0933|consen 1027 ELNKAWEKVNKDFGSIFSTLLPGA----MAKLEPPE--GKTVLDGLEVKVKFGG--IWKESLS 1081 (1174)
T ss_pred HHHHHHHHHhhhHHHHHHHhCCCc----cccccCCC--CCccccceEEEEEeCc--cHHHHHH
Confidence 344455555555555443322211 11345552 3455678888887775 6777663
No 119
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=87.69 E-value=17 Score=39.31 Aligned_cols=107 Identities=15% Similarity=0.127 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccc-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 129 KLDKEVDDVTRDIEAYEACLQRLEGEAR-DVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 207 (465)
Q Consensus 129 ~L~~qle~~~~E~d~Y~~fL~~L~~~~~-~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~ 207 (465)
+.|+++.+++.++.....--.++..+.. .....+.+.+.+.+.|.|.++|.+|..++-.++-+.+.+-+-+.......+
T Consensus 10 ~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~~~t~~~~~~e 89 (459)
T KOG0288|consen 10 ENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEATEKTLTVDVLIAE 89 (459)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677776666554433333332210 000112233344445555555555555555555544443333333444444
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 012379 208 ELEERYWQEFNNFQFQLIAHQEERDAIS 235 (465)
Q Consensus 208 ~~E~~~w~e~n~~q~ql~~~~~e~~sl~ 235 (465)
.++-++..+...++.|..+|.+.-..+.
T Consensus 90 n~~~r~~~eir~~~~q~~e~~n~~~~l~ 117 (459)
T KOG0288|consen 90 NLRIRSLNEIRELREQKAEFENAELALR 117 (459)
T ss_pred HHHHHHHHHHHHHHHhhhhhccchhhHH
Confidence 5555555666556555555555444443
No 120
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=87.54 E-value=8.8 Score=38.05 Aligned_cols=13 Identities=23% Similarity=0.391 Sum_probs=5.8
Q ss_pred chHHHHHHHHHHH
Q 012379 118 LCLECMRVLSDKL 130 (465)
Q Consensus 118 LC~eC~d~Lle~L 130 (465)
+|.+=.=.++.+|
T Consensus 111 lvI~R~~~ll~~l 123 (216)
T KOG1962|consen 111 LVIRRLHTLLREL 123 (216)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444433
No 121
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=87.38 E-value=48 Score=38.32 Aligned_cols=24 Identities=21% Similarity=0.398 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 012379 227 HQEERDAISSKIEVSQAHLELLKR 250 (465)
Q Consensus 227 ~~~e~~sl~~q~~~~~~~LdkL~k 250 (465)
+.+|++.+..+++..+..++.+++
T Consensus 637 ~~~EL~~~~~~l~~l~~si~~lk~ 660 (717)
T PF10168_consen 637 FKKELERMKDQLQDLKASIEQLKK 660 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 122
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=87.36 E-value=8 Score=42.33 Aligned_cols=74 Identities=15% Similarity=0.195 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012379 176 RKLEAAIEETEKQNAEVNAELKELELKSKRFKELEE-RYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 249 (465)
Q Consensus 176 ~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~-~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~LdkL~ 249 (465)
++++.++..|+++.+.+.+|-+.|+++...+++.=. ..=.+...++.+..++++++..+..++...+.+|+-+.
T Consensus 69 k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~~~ 143 (472)
T TIGR03752 69 KELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRLAGVL 143 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 333444444444444444444444443333332211 12222334444555556666666666666666665433
No 123
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=87.17 E-value=34 Score=36.85 Aligned_cols=35 Identities=11% Similarity=0.047 Sum_probs=24.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012379 216 EFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 250 (465)
Q Consensus 216 e~n~~q~ql~~~~~e~~sl~~q~~~~~~~LdkL~k 250 (465)
.+...+.++..++.+.+.....|+.....++..+-
T Consensus 349 ~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea~~ 383 (498)
T TIGR03007 349 TIPEVEAELTQLNRDYEVNKSNYEQLLTRRESAEV 383 (498)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777777777777777766653
No 124
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=87.15 E-value=20 Score=38.93 Aligned_cols=29 Identities=38% Similarity=0.450 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012379 224 LIAHQEERDAISSKIEVSQAHLELLKRTN 252 (465)
Q Consensus 224 l~~~~~e~~sl~~q~~~~~~~LdkL~ktN 252 (465)
|..|++++.+...-++-...+|++|+..-
T Consensus 362 Lrrfq~ekeatqELieelrkelehlr~~k 390 (502)
T KOG0982|consen 362 LRRFQEEKEATQELIEELRKELEHLRRRK 390 (502)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777777666666777788887653
No 125
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=87.08 E-value=30 Score=33.47 Aligned_cols=110 Identities=27% Similarity=0.344 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 133 EVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKL-------KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKR 205 (465)
Q Consensus 133 qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~-------~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~ 205 (465)
++++-...-..|...|..|++...++-.--.-..++. ++..+.+.+++++.+-+.+..+++.+|.+|+.++.+
T Consensus 63 ~idd~~~~f~~~~~tl~~LE~~GFnV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~e 142 (190)
T PF05266_consen 63 QIDDSRSSFESLMKTLSELEEHGFNVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILE 142 (190)
T ss_pred ccCCcHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 3344444455566666666654322211111111222 233444455555555555555667777777777666
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 206 FKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQ 242 (465)
Q Consensus 206 L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~ 242 (465)
|++.....=........++...+.....++..+..+.
T Consensus 143 l~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e 179 (190)
T PF05266_consen 143 LQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAE 179 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655554444555555555555555555555554444
No 126
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=87.04 E-value=16 Score=36.58 Aligned_cols=39 Identities=33% Similarity=0.498 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 171 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKEL 209 (465)
Q Consensus 171 Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~ 209 (465)
++.+..+|..+-...+.++..|.+++.+++.++..|.+.
T Consensus 59 aee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee 97 (246)
T PF00769_consen 59 AEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEE 97 (246)
T ss_dssp HHHHHHHHHH------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444455555555666665555555433
No 127
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=87.01 E-value=65 Score=37.17 Aligned_cols=30 Identities=13% Similarity=0.282 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 012379 125 VLSDKLDKEVDDVTRDIEAYEACLQRLEGE 154 (465)
Q Consensus 125 ~Lle~L~~qle~~~~E~d~Y~~fL~~L~~~ 154 (465)
..+..|+.++..+..|...=+..-+.|+.+
T Consensus 418 ~a~~rLE~dvkkLraeLq~~Rq~E~ELRsq 447 (697)
T PF09726_consen 418 DAISRLEADVKKLRAELQSSRQSEQELRSQ 447 (697)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 344467777777777777666555555543
No 128
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=86.78 E-value=25 Score=39.93 Aligned_cols=19 Identities=26% Similarity=0.436 Sum_probs=14.0
Q ss_pred HHHHHHhhHHHHHHHHhhC
Q 012379 408 ALKYTLCNLKWALFWFVGN 426 (465)
Q Consensus 408 AlK~lLtNlKwlLaw~~~~ 426 (465)
-||-=|-=|+-++.|++|.
T Consensus 488 ~mk~kl~elq~lv~~l~~~ 506 (617)
T PF15070_consen 488 EMKVKLLELQELVLRLVGD 506 (617)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 5676677778888888853
No 129
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=86.73 E-value=34 Score=33.68 Aligned_cols=39 Identities=8% Similarity=0.233 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 169 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 207 (465)
Q Consensus 169 ~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~ 207 (465)
..+..+...+..++..++.+.+++.+++.+.+.+..++.
T Consensus 59 ~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~ 97 (302)
T PF10186_consen 59 QQLKREIEELRERLERLRERIERLRKRIEQKRERLEELR 97 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666677777777766666666665555543
No 130
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=86.63 E-value=45 Score=37.59 Aligned_cols=44 Identities=23% Similarity=0.195 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 164 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 207 (465)
Q Consensus 164 l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~ 207 (465)
+.+++..++.+..++..++..++.+..++..++.+++.+..++.
T Consensus 426 l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 469 (650)
T TIGR03185 426 LLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEKT 469 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666666666666666666666666555543
No 131
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=86.50 E-value=27 Score=39.01 Aligned_cols=20 Identities=15% Similarity=0.391 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 012379 130 LDKEVDDVTRDIEAYEACLQ 149 (465)
Q Consensus 130 L~~qle~~~~E~d~Y~~fL~ 149 (465)
++.++..+..|.+.|..-+.
T Consensus 111 ~e~ei~kl~~e~~elr~~~~ 130 (546)
T KOG0977|consen 111 LEIEITKLREELKELRKKLE 130 (546)
T ss_pred HHHHHHHhHHHHHHHHHHHH
Confidence 44445555555555554433
No 132
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=86.40 E-value=43 Score=38.37 Aligned_cols=33 Identities=12% Similarity=0.150 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 012379 122 CMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGE 154 (465)
Q Consensus 122 C~d~Lle~L~~qle~~~~E~d~Y~~fL~~L~~~ 154 (465)
=+...++.|++|+..+.++.+.-+.-|+..+.+
T Consensus 264 ~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~ 296 (726)
T PRK09841 264 QDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQ 296 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456666677777666666666666655543
No 133
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=86.38 E-value=52 Score=38.80 Aligned_cols=81 Identities=14% Similarity=0.224 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012379 171 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 250 (465)
Q Consensus 171 Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~LdkL~k 250 (465)
|.++...|.....+..++.+.-..-+.+++++..+|++.=++.-++.........+..+..++++..+...+.++++|++
T Consensus 436 l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~ 515 (980)
T KOG0980|consen 436 LRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQR 515 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444455555555544433444444444445555566666777778888888899988
Q ss_pred c
Q 012379 251 T 251 (465)
Q Consensus 251 t 251 (465)
+
T Consensus 516 ~ 516 (980)
T KOG0980|consen 516 T 516 (980)
T ss_pred H
Confidence 8
No 134
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=86.08 E-value=14 Score=42.72 Aligned_cols=21 Identities=29% Similarity=0.314 Sum_probs=15.5
Q ss_pred CCCccchhHHHHHHHHHhhcC
Q 012379 90 NNSGFHSTITVLKRAFEIATS 110 (465)
Q Consensus 90 ~~~~ls~~i~~l~~lFdIlSs 110 (465)
.-++||..+..+..+...++.
T Consensus 387 ~lStfS~~m~~~~~Il~~~~~ 407 (782)
T PRK00409 387 SLSTFSGHMTNIVRILEKADK 407 (782)
T ss_pred chhHHHHHHHHHHHHHHhCCc
Confidence 446789888888888776643
No 135
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=85.94 E-value=21 Score=39.28 Aligned_cols=53 Identities=15% Similarity=0.231 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHH
Q 012379 171 IEEEERKLEAAIEETEKQNAEVNAELKELE---LKSKRFKELEERYWQEFNNFQFQ 223 (465)
Q Consensus 171 Le~EE~~L~~eL~~LE~e~~~l~~el~~le---~e~~~L~~~E~~~w~e~n~~q~q 223 (465)
|..|....+.||+.|..+...|..+++... ++.+....+-++..++++...-+
T Consensus 335 l~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~ 390 (622)
T COG5185 335 LKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQ 390 (622)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcch
Confidence 444444445555555555555555554432 22223334444555655554443
No 136
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=85.67 E-value=28 Score=38.76 Aligned_cols=181 Identities=20% Similarity=0.274 Sum_probs=98.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------cccc------------CCCHHH------HHHHHHH
Q 012379 119 CLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEG----------EARD------------VLSEAD------FLKEKLK 170 (465)
Q Consensus 119 C~eC~d~Lle~L~~qle~~~~E~d~Y~~fL~~L~~----------~~~~------------~~~ee~------l~~e~~~ 170 (465)
+.+=.+.+-+.++.=++.+++|.+++...-+.+.. .... .+++.+ +.+++..
T Consensus 276 ~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~ 355 (560)
T PF06160_consen 276 VEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKE 355 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 66667777777888888888888887655443321 1000 111111 1122222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012379 171 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 250 (465)
Q Consensus 171 Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~LdkL~k 250 (465)
|+..-..+...+.+-..-...+..++.++..++..++++-..++..+..+..+-....+.+..+...+......+++.+=
T Consensus 356 l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nL 435 (560)
T PF06160_consen 356 LEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSNL 435 (560)
T ss_pred HHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 22222223333333233334566677777777777777777888888888877777777777777777666665554332
Q ss_pred ccc---CCCceeeeecCCeeeeccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHhh
Q 012379 251 TNV---LNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQY 304 (465)
Q Consensus 251 tNV---~Nd~F~I~hdG~fGTINGlRLGrlp~~~V~W~EINAAwGQ~~LLL~tla~~ 304 (465)
-.+ |-+.|.-..+ .+.++. ..|..+|++-++||.-+=.+.--+.++..+
T Consensus 436 PGlp~~y~~~~~~~~~-~i~~l~----~~L~~~pinm~~v~~~l~~a~~~v~~L~~~ 487 (560)
T PF06160_consen 436 PGLPEDYLDYFFDVSD-EIEELS----DELNQVPINMDEVNKQLEEAEDDVETLEEK 487 (560)
T ss_pred CCCCHHHHHHHHHHHH-HHHHHH----HHHhcCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 111 1112221111 111111 113337899999999888776666555443
No 137
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=85.44 E-value=33 Score=40.94 Aligned_cols=18 Identities=22% Similarity=0.368 Sum_probs=10.9
Q ss_pred ccccCCCCCCCCCCCCCC
Q 012379 23 VVLPKQRPQSHGVPPRPR 40 (465)
Q Consensus 23 ~~l~~~~~~~~~~~~~~~ 40 (465)
-++|..+++...++|...
T Consensus 573 TiIPLnKI~s~~~s~~v~ 590 (1174)
T KOG0933|consen 573 TIIPLNKIQSFVLSPNVL 590 (1174)
T ss_pred EEEechhhhhccCCHhHH
Confidence 345666676666666553
No 138
>PRK11519 tyrosine kinase; Provisional
Probab=85.37 E-value=41 Score=38.51 Aligned_cols=33 Identities=9% Similarity=0.008 Sum_probs=18.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012379 217 FNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 249 (465)
Q Consensus 217 ~n~~q~ql~~~~~e~~sl~~q~~~~~~~LdkL~ 249 (465)
.+..+.++.+++.+.+..+.-|+...+.++.++
T Consensus 365 lp~~e~~~~~L~Re~~~~~~lY~~lL~r~~e~~ 397 (719)
T PRK11519 365 MPKTQQEIVRLTRDVESGQQVYMQLLNKQQELK 397 (719)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555555555556666666665555554
No 139
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=85.37 E-value=15 Score=41.56 Aligned_cols=23 Identities=17% Similarity=0.170 Sum_probs=13.7
Q ss_pred HHHHHHHhhc-CCcccCCcchHHH
Q 012379 100 VLKRAFEIAT-SQTQVEQPLCLEC 122 (465)
Q Consensus 100 ~l~~lFdIlS-s~s~iDhPLC~eC 122 (465)
+.++|-+-|+ .-+.++++-|-+-
T Consensus 83 taa~i~eWles~~p~~~~~s~~~~ 106 (861)
T KOG1899|consen 83 TAARIAEWLESPSPSMSTVSCPEY 106 (861)
T ss_pred HHHHHHHHHhccCCCCCCccCCcc
Confidence 4445666664 3556777777653
No 140
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=85.37 E-value=29 Score=34.34 Aligned_cols=8 Identities=50% Similarity=0.762 Sum_probs=4.9
Q ss_pred CCCCceee
Q 012379 378 CFKLPYKI 385 (465)
Q Consensus 378 ~~~LPY~I 385 (465)
-++||-.+
T Consensus 240 l~~LPv~~ 247 (251)
T PF11932_consen 240 LLKLPVSI 247 (251)
T ss_pred HhccCCCC
Confidence 46777644
No 141
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=85.28 E-value=12 Score=43.26 Aligned_cols=47 Identities=32% Similarity=0.228 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 168 KLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYW 214 (465)
Q Consensus 168 ~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w 214 (465)
+.+|++++.+++++.+++++.++++++..++++.+.+++++..++.+
T Consensus 517 i~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~ 563 (771)
T TIGR01069 517 IEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKK 563 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555544444333
No 142
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=85.25 E-value=15 Score=34.90 Aligned_cols=33 Identities=21% Similarity=0.357 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 175 ERKLEAAIEETEKQNAEVNAELKELELKSKRFK 207 (465)
Q Consensus 175 E~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~ 207 (465)
...+..|.+.|+.+.+++.++++.|+.+...|.
T Consensus 99 ~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~ 131 (161)
T TIGR02894 99 DQALQKENERLKNQNESLQKRNEELEKELEKLR 131 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555555544443
No 143
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=85.20 E-value=6.4 Score=38.57 Aligned_cols=45 Identities=24% Similarity=0.234 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 164 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKE 208 (465)
Q Consensus 164 l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~ 208 (465)
...++..|+..=.++....-++|..+.++++|+.+++.+...+++
T Consensus 173 ~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~~ 217 (221)
T PF05700_consen 173 AGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAELKE 217 (221)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445666777777777777778888888888888877776655543
No 144
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=85.08 E-value=24 Score=42.74 Aligned_cols=11 Identities=18% Similarity=0.099 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 012379 138 TRDIEAYEACL 148 (465)
Q Consensus 138 ~~E~d~Y~~fL 148 (465)
+++...|..-|
T Consensus 514 ~~~~~~~~eel 524 (1317)
T KOG0612|consen 514 EALVRQLEEEL 524 (1317)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 145
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.05 E-value=23 Score=41.22 Aligned_cols=13 Identities=46% Similarity=0.424 Sum_probs=7.4
Q ss_pred cccccccccccCC
Q 012379 16 TRMDNSFVVLPKQ 28 (465)
Q Consensus 16 ~~~d~s~~~l~~~ 28 (465)
.+|-.|+||=|+.
T Consensus 127 ~~m~~s~v~~~Pv 139 (1118)
T KOG1029|consen 127 RRMSSSPVVGPPV 139 (1118)
T ss_pred cccCCCccCCCCc
Confidence 4566666665444
No 146
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=84.50 E-value=56 Score=36.14 Aligned_cols=41 Identities=22% Similarity=0.209 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 166 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 206 (465)
Q Consensus 166 ~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L 206 (465)
.++.+...+...+.+...........|..+|..+..++...
T Consensus 316 ~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~ 356 (522)
T PF05701_consen 316 SELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAA 356 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333444444444443333
No 147
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=84.38 E-value=20 Score=41.62 Aligned_cols=38 Identities=37% Similarity=0.404 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 169 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 206 (465)
Q Consensus 169 ~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L 206 (465)
.+|++++.+++++.+++++.++++++..++++.+.+++
T Consensus 523 ~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l 560 (782)
T PRK00409 523 ASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKL 560 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444333
No 148
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=84.32 E-value=51 Score=37.30 Aligned_cols=95 Identities=17% Similarity=0.159 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeeecCCeeeec
Q 012379 191 EVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTIN 270 (465)
Q Consensus 191 ~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~LdkL~ktNV~Nd~F~I~hdG~fGTIN 270 (465)
.+.++++.|+......+.+=.+-|.+.-.+..+..+...+...-...+......++++.+. .|..-++. .-+-.|.
T Consensus 423 pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~--~~Rs~Yt~--RIlEIv~ 498 (594)
T PF05667_consen 423 PLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKD--VNRSAYTR--RILEIVK 498 (594)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--CCHHHHHH--HHHHHHH
Confidence 3444444444444333334446677888888888888888877777788888888888887 34333322 2233455
Q ss_pred cccCCCCCCCCCChHHHHHHHHHHHHH
Q 012379 271 NFRLGRLPKIPVEWDEINAAWGQACLL 297 (465)
Q Consensus 271 GlRLGrlp~~~V~W~EINAAwGQ~~LL 297 (465)
++|==+ .||+-=+.-|--|
T Consensus 499 NI~KQk--------~eI~KIl~DTr~l 517 (594)
T PF05667_consen 499 NIRKQK--------EEIEKILSDTREL 517 (594)
T ss_pred hHHHHH--------HHHHHHHHHHHHH
Confidence 555433 3555444444443
No 149
>PF11414 Suppressor_APC: Adenomatous polyposis coli tumour suppressor protein; PDB: 1M5I_A.
Probab=84.05 E-value=16 Score=31.19 Aligned_cols=56 Identities=14% Similarity=0.274 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhH
Q 012379 164 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEE--RYWQEFNN 219 (465)
Q Consensus 164 l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~--~~w~e~n~ 219 (465)
..+-++.||+|..-|.+.|+.+|++++=..++|..++.+...|-.... .||.+...
T Consensus 5 ~lk~mkeLEqEkd~LLqgLe~~Er~r~Wy~~qL~~vq~rq~~Lg~~~~~~~~~~d~~~ 62 (84)
T PF11414_consen 5 MLKRMKELEQEKDVLLQGLEMEERERDWYQQQLQSVQERQRHLGRNGTQFDFQMDLHR 62 (84)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCccccccc
Confidence 356677899999999999999999999999999999998888876665 66665543
No 150
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=84.02 E-value=37 Score=37.19 Aligned_cols=32 Identities=25% Similarity=0.202 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 012379 206 FKELEERYWQEFNNFQFQLIAHQEERDAISSK 237 (465)
Q Consensus 206 L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q 237 (465)
++++|+++=+..-..+.+..++++++.-|...
T Consensus 419 l~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf~ 450 (493)
T KOG0804|consen 419 LKELEEREKEALGSKDEKITDLQEQLRDLMFF 450 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhee
Confidence 34444444455555555555555555444433
No 151
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=83.83 E-value=18 Score=29.78 Aligned_cols=27 Identities=30% Similarity=0.335 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 178 LEAAIEETEKQNAEVNAELKELELKSK 204 (465)
Q Consensus 178 L~~eL~~LE~e~~~l~~el~~le~e~~ 204 (465)
|..|-+.|.+........|..|..+..
T Consensus 17 L~eEGekLSk~el~~~~~IKKLr~~~~ 43 (74)
T PF12329_consen 17 LMEEGEKLSKKELKLNNTIKKLRAKIK 43 (74)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344444444444444444444444333
No 152
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=83.61 E-value=46 Score=32.55 Aligned_cols=43 Identities=26% Similarity=0.349 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 164 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 206 (465)
Q Consensus 164 l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L 206 (465)
+......||++-+.|.++-+.+|+|...+.+++..|+.+-..+
T Consensus 72 Lk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl 114 (193)
T PF14662_consen 72 LKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKL 114 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3333344555555666666666666655555555555444433
No 153
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=83.45 E-value=52 Score=32.95 Aligned_cols=76 Identities=18% Similarity=0.245 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 171 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLE 246 (465)
Q Consensus 171 Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld 246 (465)
++.+-..|.....+++.+..+|..+....+.+...|...=..+-.....+.-....-..+...+..++..++..+.
T Consensus 45 aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~ 120 (246)
T PF00769_consen 45 AEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEE 120 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444333344444444444444445555566666666655443
No 154
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=83.20 E-value=48 Score=38.35 Aligned_cols=79 Identities=22% Similarity=0.319 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 012379 163 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELE---ERYWQEFNNFQFQLIAHQEERDAISSKIE 239 (465)
Q Consensus 163 ~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E---~~~w~e~n~~q~ql~~~~~e~~sl~~q~~ 239 (465)
++.++.+.+|.+...|+.+|+++.--..++-++..+||+|--.|+.+= ++---+|-.++.++..+++|...++.|++
T Consensus 66 ~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qle 145 (717)
T PF09730_consen 66 ELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLE 145 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666777777777777665555544444444444333222111 12235677788888888888888887766
Q ss_pred HH
Q 012379 240 VS 241 (465)
Q Consensus 240 ~~ 241 (465)
-+
T Consensus 146 e~ 147 (717)
T PF09730_consen 146 EA 147 (717)
T ss_pred HH
Confidence 54
No 155
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=83.16 E-value=28 Score=37.49 Aligned_cols=31 Identities=13% Similarity=0.284 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 012379 124 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGE 154 (465)
Q Consensus 124 d~Lle~L~~qle~~~~E~d~Y~~fL~~L~~~ 154 (465)
...++.+..++.+..+....+..-+++|+.+
T Consensus 211 ~~~l~~~~~el~eik~~~~~L~~~~e~Lk~~ 241 (395)
T PF10267_consen 211 NLGLQKILEELREIKESQSRLEESIEKLKEQ 241 (395)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788888999888888888888888753
No 156
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=83.10 E-value=44 Score=38.28 Aligned_cols=35 Identities=9% Similarity=-0.045 Sum_probs=20.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012379 216 EFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 250 (465)
Q Consensus 216 e~n~~q~ql~~~~~e~~sl~~q~~~~~~~LdkL~k 250 (465)
.....+.++.+++.+.+..+..|+...+..+.++=
T Consensus 364 ~~p~~e~~~~~L~R~~~~~~~lY~~lL~r~~e~~i 398 (726)
T PRK09841 364 AMPSTQQEVLRLSRDVEAGRAVYLQLLNRQQELSI 398 (726)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666666666666555555443
No 157
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=83.04 E-value=25 Score=29.04 Aligned_cols=41 Identities=22% Similarity=0.281 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 169 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKEL 209 (465)
Q Consensus 169 ~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~ 209 (465)
.+||.--..+...|..|+.+.+++..+-..+..+...|.++
T Consensus 7 ~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~e 47 (72)
T PF06005_consen 7 EQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEE 47 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34444444444444445554444444444444444444333
No 158
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=82.91 E-value=14 Score=40.54 Aligned_cols=74 Identities=22% Similarity=0.224 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012379 176 RKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYW-QEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 249 (465)
Q Consensus 176 ~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w-~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~LdkL~ 249 (465)
+.|..++++++++.+.+.++=+.|.+|-++|.+.|...= +--+.++-...+++++++.++.+...++..|+.|.
T Consensus 62 rTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~ 136 (472)
T TIGR03752 62 RTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQ 136 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555554444444333211 11222223333444444455444444444444443
No 159
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=82.67 E-value=35 Score=37.77 Aligned_cols=18 Identities=33% Similarity=0.335 Sum_probs=8.3
Q ss_pred eeeeecCCeeeeccccCCC
Q 012379 258 FPIWHDGEFGTINNFRLGR 276 (465)
Q Consensus 258 F~I~hdG~fGTINGlRLGr 276 (465)
.++-.|.--|-|=| |=||
T Consensus 208 v~lp~d~~kgriig-reGr 225 (514)
T TIGR03319 208 VNLPNDEMKGRIIG-REGR 225 (514)
T ss_pred EEcCChhhhccccC-CCcc
Confidence 34444544455544 4443
No 160
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=82.62 E-value=41 Score=31.23 Aligned_cols=34 Identities=24% Similarity=0.331 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 167 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 200 (465)
Q Consensus 167 e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le 200 (465)
+...|+.+...+..++..|+.+...+..+...|.
T Consensus 53 eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~ 86 (140)
T PF10473_consen 53 EIETLEEELEELTSELNQLELELDTLRSEKENLD 86 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444433
No 161
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=82.49 E-value=28 Score=40.38 Aligned_cols=19 Identities=16% Similarity=0.179 Sum_probs=13.7
Q ss_pred CCccchhHHHHHHHHHhhc
Q 012379 91 NSGFHSTITVLKRAFEIAT 109 (465)
Q Consensus 91 ~~~ls~~i~~l~~lFdIlS 109 (465)
-++||..+..+..++.-+.
T Consensus 383 LStfS~~m~~~~~il~~~~ 401 (771)
T TIGR01069 383 LSTFSGHMKNISAILSKTT 401 (771)
T ss_pred hhHHHHHHHHHHHHHHhcC
Confidence 3568888888877776553
No 162
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=82.37 E-value=57 Score=32.64 Aligned_cols=64 Identities=16% Similarity=0.293 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 130 LDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVN 193 (465)
Q Consensus 130 L~~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~ 193 (465)
++..+..+.+-++.|..-.+..+.-.....+..++.+-..++++-.......++.+++......
T Consensus 118 ~q~~~~~l~kaK~~Y~~~cke~e~a~~~~~s~k~leK~~~K~~ka~~~y~~~~~ky~~~~~~~~ 181 (261)
T cd07674 118 LQVQSQHLQKSRENYHSKCVEQERLRREGVPQKELEKAELKTKKAAESLRGSVEKYNRARGDFE 181 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555556666666555444332212233444444334444444444444555544444443
No 163
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=82.31 E-value=57 Score=35.51 Aligned_cols=75 Identities=17% Similarity=0.177 Sum_probs=50.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhcccCCCceeeeecCCeeeeccccCCCCCCCCCChHHHHHH
Q 012379 212 RYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHL-ELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAA 290 (465)
Q Consensus 212 ~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~L-dkL~ktNV~Nd~F~I~hdG~fGTINGlRLGrlp~~~V~W~EINAA 290 (465)
.+.+..|.+.+....+++.+.+|..++.+.=..| +.|..++ ++||...+..|+..|=-+.
T Consensus 213 ~~~k~l~al~llv~tLee~~~~LktqIV~sPeKL~~~leemk-------------------~~l~k~k~~~~~l~~K~~i 273 (446)
T KOG4438|consen 213 EKNKILNALKLLVVTLEENANCLKTQIVQSPEKLKEALEEMK-------------------DLLQKEKSAMVELQEKAKI 273 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHH
Confidence 3788889999999999999998988876654333 1222222 3444455666777777777
Q ss_pred HHHHHHHHHHHHhhc
Q 012379 291 WGQACLLLHTMCQYF 305 (465)
Q Consensus 291 wGQ~~LLL~tla~~l 305 (465)
+|-.+=-+.++-.-+
T Consensus 274 L~ekv~~~qti~~e~ 288 (446)
T KOG4438|consen 274 LEEKVTNLQTIEKEL 288 (446)
T ss_pred HHhHhHHHHHHHHHH
Confidence 777777776665543
No 164
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=82.29 E-value=24 Score=38.62 Aligned_cols=34 Identities=9% Similarity=0.066 Sum_probs=19.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012379 217 FNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 250 (465)
Q Consensus 217 ~n~~q~ql~~~~~e~~sl~~q~~~~~~~LdkL~k 250 (465)
...+..++.++..++..++.++..++++|..|..
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 140 IERLLTEDREAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3334444455555555566666666667766654
No 165
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=82.28 E-value=46 Score=32.58 Aligned_cols=95 Identities=19% Similarity=0.303 Sum_probs=47.3
Q ss_pred HHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 012379 143 AYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQF 222 (465)
Q Consensus 143 ~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ 222 (465)
.|..|-+.-.. +.+.|+. .-+|+.+..-++..|.+-+....+|.++|.-...+.......- ...+.
T Consensus 89 ~Y~~F~~Qt~~-----LA~~eir--R~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q-------~q~r~ 154 (192)
T PF11180_consen 89 IYRDFAQQTAR-----LADVEIR--RAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQ-------QQARQ 154 (192)
T ss_pred HHHHHHHHHHH-----HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH
Confidence 57777664321 2222322 2234555555555555555555555555544443333332221 22334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012379 223 QLIAHQEERDAISSKIEVSQAHLELLKRT 251 (465)
Q Consensus 223 ql~~~~~e~~sl~~q~~~~~~~LdkL~kt 251 (465)
+...+..++....+|++..+.++..|.+.
T Consensus 155 ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q 183 (192)
T PF11180_consen 155 EAQALEAERRAAQAQLRQLQRQVRQLQRQ 183 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666666777777777766654
No 166
>PRK10698 phage shock protein PspA; Provisional
Probab=82.20 E-value=54 Score=32.30 Aligned_cols=51 Identities=14% Similarity=0.172 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 194 AELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAH 244 (465)
Q Consensus 194 ~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~ 244 (465)
..+..|+.+.......-.++=..+..++..+.+....+..|.+++..+..+
T Consensus 99 ~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~ 149 (222)
T PRK10698 99 DLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSS 149 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444555556666667777777777777777655
No 167
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=82.06 E-value=78 Score=34.03 Aligned_cols=27 Identities=22% Similarity=0.229 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012379 224 LIAHQEERDAISSKIEVSQAHLELLKR 250 (465)
Q Consensus 224 l~~~~~e~~sl~~q~~~~~~~LdkL~k 250 (465)
+.+...++..+..++..++.++..++.
T Consensus 238 ~~~~~~~i~~l~~~i~~~~~~~~~~~~ 264 (457)
T TIGR01000 238 LATIQQQIDQLQKSIASYQVQKAGLTK 264 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 334444555666666666666665543
No 168
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=81.97 E-value=64 Score=35.61 Aligned_cols=39 Identities=23% Similarity=0.254 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 206 FKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAH 244 (465)
Q Consensus 206 L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~ 244 (465)
.+..|++|..-.-+||.--.+-.+||+.|+.+++-.-.|
T Consensus 487 Ke~~EqefLslqeEfQk~ekenl~ERqkLKs~leKLvaq 525 (527)
T PF15066_consen 487 KETREQEFLSLQEEFQKHEKENLEERQKLKSRLEKLVAQ 525 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 355666777777777777777778888888877655443
No 169
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=81.80 E-value=28 Score=28.75 Aligned_cols=35 Identities=29% Similarity=0.360 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 173 EEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 207 (465)
Q Consensus 173 ~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~ 207 (465)
..-..|..++++|+.+...+..+...|+.+-..|.
T Consensus 18 eti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 18 ETIALLQMENEELKEKNNELKEENEELKEENEQLK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 33344444555555555555555555554444443
No 170
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=81.77 E-value=42 Score=40.04 Aligned_cols=29 Identities=10% Similarity=0.115 Sum_probs=14.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 213 YWQEFNNFQFQLIAHQEERDAISSKIEVS 241 (465)
Q Consensus 213 ~w~e~n~~q~ql~~~~~e~~sl~~q~~~~ 241 (465)
-.+..+.+.-...+.++|+..++-+|...
T Consensus 326 ~l~~l~~~~~ki~e~~~EL~~I~Pky~~l 354 (1200)
T KOG0964|consen 326 ALHVLQKVKDKIEEKKDELSKIEPKYNSL 354 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 34444444555555555555555444433
No 171
>PRK12704 phosphodiesterase; Provisional
Probab=81.76 E-value=40 Score=37.42 Aligned_cols=13 Identities=23% Similarity=0.115 Sum_probs=5.4
Q ss_pred eeeeecCCeeeec
Q 012379 258 FPIWHDGEFGTIN 270 (465)
Q Consensus 258 F~I~hdG~fGTIN 270 (465)
+++-.|.--|-|=
T Consensus 214 v~lp~d~mkgrii 226 (520)
T PRK12704 214 VNLPNDEMKGRII 226 (520)
T ss_pred eecCCchhhccee
Confidence 3444444444443
No 172
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=81.70 E-value=18 Score=29.60 Aligned_cols=31 Identities=26% Similarity=0.243 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 012379 124 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGE 154 (465)
Q Consensus 124 d~Lle~L~~qle~~~~E~d~Y~~fL~~L~~~ 154 (465)
+..+..|..+++.+.+....|..-++.|..+
T Consensus 4 ea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~E 34 (69)
T PF14197_consen 4 EAEIATLRNRLDSLTRKNSVHEIENKRLRRE 34 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778888999999998898888888654
No 173
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=81.69 E-value=33 Score=29.48 Aligned_cols=64 Identities=16% Similarity=0.233 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 132 KEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELEL 201 (465)
Q Consensus 132 ~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~ 201 (465)
.++..++.+++....-+.....+. ..+...+.+|+.|..+..++.-++++....+..|++.|..
T Consensus 3 ~EL~~~~~a~~~~~~~~~~k~~~~------~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~ 66 (96)
T PF08647_consen 3 TELVSMEQAFKELSEQADKKVKEL------TILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNT 66 (96)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 455555555555444444332211 2234445566677777777777777777777666666654
No 174
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=81.62 E-value=5.7 Score=35.40 Aligned_cols=15 Identities=20% Similarity=0.556 Sum_probs=12.3
Q ss_pred cCCCceeeeecCCeee
Q 012379 253 VLNDAFPIWHDGEFGT 268 (465)
Q Consensus 253 V~Nd~F~I~hdG~fGT 268 (465)
+|++=|||-+ -+||.
T Consensus 78 LY~EGFHICn-~~yG~ 92 (110)
T PRK13169 78 LYQEGFHICN-LHYGS 92 (110)
T ss_pred HHHcCceecH-HHhCC
Confidence 5999999987 57775
No 175
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=81.62 E-value=39 Score=36.92 Aligned_cols=67 Identities=15% Similarity=0.208 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cccCCCceeeeecCCeeeeccccCCCCCCCCCChHHHHHHHHHHHHHHH
Q 012379 222 FQLIAHQEERDAISSKIEVSQAHLELLKR-TNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLH 299 (465)
Q Consensus 222 ~ql~~~~~e~~sl~~q~~~~~~~LdkL~k-tNV~Nd~F~I~hdG~fGTINGlRLGrlp~~~V~W~EINAAwGQ~~LLL~ 299 (465)
.+..-++.+|+..+.|+..|..-.+||+| .+-+=-+||.-|... +..+.-.-=|--.|+|.+.-+|.
T Consensus 347 ~E~q~~~kkrqnaekql~~Ake~~eklkKKrssv~gtl~vahgss-----------lDdVD~kIleak~al~evtt~lr 414 (575)
T KOG4403|consen 347 VEVQYYNKKRQNAEKQLKEAKEMAEKLKKKRSSVFGTLHVAHGSS-----------LDDVDHKILEAKSALSEVTTLLR 414 (575)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhcchheeeeeccccc-----------hhhHHHHHHHHHHHHHHHHHHHH
Confidence 34444566778888899999999999975 455556888877654 23333334455667777655543
No 176
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=81.59 E-value=17 Score=39.80 Aligned_cols=43 Identities=19% Similarity=0.183 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 164 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 206 (465)
Q Consensus 164 l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L 206 (465)
+.+-...+.++..++..++.+++.+.++++++|.+|+.++..+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l 171 (525)
T TIGR02231 129 WFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNAL 171 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333333445555555555555555555555555555444433
No 177
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.57 E-value=90 Score=34.40 Aligned_cols=68 Identities=13% Similarity=0.149 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 179 EAAIEETEKQNAEVNAELKELELKSKRF----------------KELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQ 242 (465)
Q Consensus 179 ~~eL~~LE~e~~~l~~el~~le~e~~~L----------------~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~ 242 (465)
..+|+++|.+...+.+|++.-+.....| .+.-.++-.......-+.....++...|..+....+
T Consensus 344 ~~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv~rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~s 423 (521)
T KOG1937|consen 344 IRRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPDDVQRKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSES 423 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666555333222222 222223333334444455556666666666666666
Q ss_pred HHHH
Q 012379 243 AHLE 246 (465)
Q Consensus 243 ~~Ld 246 (465)
..|+
T Consensus 424 e~L~ 427 (521)
T KOG1937|consen 424 EALN 427 (521)
T ss_pred HHHh
Confidence 5554
No 178
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=81.31 E-value=24 Score=36.19 Aligned_cols=152 Identities=23% Similarity=0.331 Sum_probs=82.6
Q ss_pred CccchhHHHHHHHH----HhhcC---CcccCCcchHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHhcccccC--CC
Q 012379 92 SGFHSTITVLKRAF----EIATS---QTQVEQPLCLECMRVLSDKLDKE-VDDV-TRDIEAYEACLQRLEGEARDV--LS 160 (465)
Q Consensus 92 ~~ls~~i~~l~~lF----dIlSs---~s~iDhPLC~eC~d~Lle~L~~q-le~~-~~E~d~Y~~fL~~L~~~~~~~--~~ 160 (465)
....+.+..+..|| ||.++ ++..=.-.+.+|-=.+++.|+.. +.++ ..+...-.+.|..|+.-.-+. +.
T Consensus 93 ~Vk~S~~silq~If~KHGDIAsNc~lkS~~~RS~yLe~Lc~IIqeLq~t~~~~LS~~dl~e~~~~l~DLesa~vkV~WLR 172 (269)
T PF05278_consen 93 QVKPSQVSILQKIFEKHGDIASNCKLKSQQFRSYYLECLCDIIQELQSTPLKELSESDLKEMIATLKDLESAKVKVDWLR 172 (269)
T ss_pred EEcHhHHHHHHHHHHhCccHhhccccCcHHHHHHHHHHHHHHHHHHhcCcHhhhhHHHHHHHHHHHHHHHHcCcchHHHH
Confidence 34677888899999 78865 45555557889999999999763 3333 333344445566655322110 00
Q ss_pred --HHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 012379 161 --EADFLK------EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERD 232 (465)
Q Consensus 161 --ee~l~~------e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~ 232 (465)
-+++.+ .....+.+.+..+..|+..+.|.+....++.+.+.+.+++.+.. -+..-.|.+++.++-
T Consensus 173 ~~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i-------~e~~~rl~~l~~~~~ 245 (269)
T PF05278_consen 173 SKLEEILEAKEIYDQHETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERI-------TEMKGRLGELEMEST 245 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 011111 11123333344444455445555544455555555444444332 233444666677777
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 012379 233 AISSKIEVSQAHLELLKR 250 (465)
Q Consensus 233 sl~~q~~~~~~~LdkL~k 250 (465)
.+...+.++....++..-
T Consensus 246 ~l~k~~~~~~sKV~kf~~ 263 (269)
T PF05278_consen 246 RLSKTIKSIKSKVEKFHG 263 (269)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 777777777777776644
No 179
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=81.18 E-value=70 Score=33.44 Aligned_cols=83 Identities=23% Similarity=0.287 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 012379 163 DFLKEKLKIEEEERKLEAAIEETE------------------KQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQL 224 (465)
Q Consensus 163 ~l~~e~~~Le~EE~~L~~eL~~LE------------------~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql 224 (465)
.+.+.+..||+|-..|+.|...|. ++......++..|..++....++-.+.-.+...+..++
T Consensus 164 ~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Llsqi 243 (306)
T PF04849_consen 164 ALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQI 243 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556776666666655544 22223334455555555444444445555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 012379 225 IAHQEERDAISSKIEVSQAHL 245 (465)
Q Consensus 225 ~~~~~e~~sl~~q~~~~~~~L 245 (465)
...+....++-..-+-.+.+|
T Consensus 244 vdlQ~r~k~~~~EnEeL~q~L 264 (306)
T PF04849_consen 244 VDLQQRCKQLAAENEELQQHL 264 (306)
T ss_pred HHHHHHHHHHhhhHHHHHHHH
Confidence 555555554443333333333
No 180
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=81.11 E-value=25 Score=30.61 Aligned_cols=36 Identities=25% Similarity=0.442 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 169 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSK 204 (465)
Q Consensus 169 ~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~ 204 (465)
..|+...+.++..++.++++...+..++.+++.++.
T Consensus 70 ~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 70 QELKEKKETLELRVKTLQRQEERLREQLKELQEKIQ 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555666655555555555555443
No 181
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=80.97 E-value=95 Score=34.32 Aligned_cols=30 Identities=10% Similarity=0.314 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 171 IEEEERKLEAAIEETEKQNAEVNAELKELE 200 (465)
Q Consensus 171 Le~EE~~L~~eL~~LE~e~~~l~~el~~le 200 (465)
++.+.+...+++..+++-.+++..+.+.|-
T Consensus 90 le~~~~~~~ek~~~l~~~~~~L~~~F~~LA 119 (475)
T PRK10361 90 MEAAQQHADDKIRQMINSEQRLSEQFENLA 119 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555555555443
No 182
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=80.85 E-value=75 Score=40.35 Aligned_cols=77 Identities=16% Similarity=0.194 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 126 LSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLS-EADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 202 (465)
Q Consensus 126 Lle~L~~qle~~~~E~d~Y~~fL~~L~~~~~~~~~-ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e 202 (465)
++++.+.+++.++.+.+.|..-|+.+.....+... -.....+--..+..+.++.++...|+.+..-|..+|...-.+
T Consensus 130 ~le~~~~ele~l~~~n~~l~~ql~ss~~~~~e~e~r~~e~~s~~vs~q~k~~rl~QEksll~s~~~wL~~eL~~~~ek 207 (1822)
T KOG4674|consen 130 LLERQKAELEALESENKDLNDQLKSSTKTLSELEARLQETQSEDVSSQLKEERLEQEKSLLESENKWLSRELSKVNEK 207 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 44555556666666777776666655432110000 000111111134445555555555555555555544444333
No 183
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=80.82 E-value=53 Score=36.62 Aligned_cols=35 Identities=17% Similarity=0.248 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 165 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKEL 199 (465)
Q Consensus 165 ~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~l 199 (465)
.+|.-+|..+..++.++++.+-.|++++.+-|...
T Consensus 232 ~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~ 266 (596)
T KOG4360|consen 232 QEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAY 266 (596)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666655555555544443
No 184
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=80.68 E-value=74 Score=38.71 Aligned_cols=10 Identities=0% Similarity=0.278 Sum_probs=5.8
Q ss_pred CccceeeEEe
Q 012379 388 DKVENYSITQ 397 (465)
Q Consensus 388 dkI~g~SIkl 397 (465)
+.|.+..|++
T Consensus 1026 ~~i~~i~v~i 1035 (1201)
T PF12128_consen 1026 EAISDIEVRI 1035 (1201)
T ss_pred cccceeEEEE
Confidence 4455666665
No 185
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=80.67 E-value=59 Score=35.55 Aligned_cols=14 Identities=14% Similarity=0.055 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHhc
Q 012379 140 DIEAYEACLQRLEG 153 (465)
Q Consensus 140 E~d~Y~~fL~~L~~ 153 (465)
|-+..+..+-+++.
T Consensus 280 e~rrhrEil~k~eR 293 (502)
T KOG0982|consen 280 EERRHREILIKKER 293 (502)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444544443
No 186
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=80.66 E-value=29 Score=29.93 Aligned_cols=37 Identities=27% Similarity=0.442 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 169 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKR 205 (465)
Q Consensus 169 ~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~ 205 (465)
..|+...+.+..+++.++++...+..++.+++.++.+
T Consensus 66 ~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 66 TELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555666666666666666666666555544
No 187
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=80.40 E-value=1.1e+02 Score=37.92 Aligned_cols=10 Identities=0% Similarity=0.069 Sum_probs=4.9
Q ss_pred HHHHHHHHhh
Q 012379 99 TVLKRAFEIA 108 (465)
Q Consensus 99 ~~l~~lFdIl 108 (465)
.....+|..|
T Consensus 180 ~ry~~l~~~l 189 (1353)
T TIGR02680 180 ERYAALLDLL 189 (1353)
T ss_pred HHHHHHHHHH
Confidence 3444555555
No 188
>PRK11281 hypothetical protein; Provisional
Probab=80.35 E-value=47 Score=40.31 Aligned_cols=26 Identities=15% Similarity=0.344 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 012379 128 DKLDKEVDDVTRDIEAYEACLQRLEG 153 (465)
Q Consensus 128 e~L~~qle~~~~E~d~Y~~fL~~L~~ 153 (465)
+.|+++++++.++.....+-|+++++
T Consensus 83 ~~L~k~l~~Ap~~l~~a~~~Le~Lk~ 108 (1113)
T PRK11281 83 EQLKQQLAQAPAKLRQAQAELEALKD 108 (1113)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 44556666666666666666666654
No 189
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=80.28 E-value=38 Score=35.35 Aligned_cols=13 Identities=31% Similarity=0.820 Sum_probs=6.4
Q ss_pred cCCcchHHHHHHH
Q 012379 114 VEQPLCLECMRVL 126 (465)
Q Consensus 114 iDhPLC~eC~d~L 126 (465)
=.|-+|..|.+.+
T Consensus 26 CGH~~C~sCv~~l 38 (309)
T TIGR00570 26 CGHTLCESCVDLL 38 (309)
T ss_pred CCCcccHHHHHHH
Confidence 3455555555544
No 190
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=80.28 E-value=73 Score=32.94 Aligned_cols=32 Identities=31% Similarity=0.292 Sum_probs=22.6
Q ss_pred CccchhHHHHHHHHHhhcCCcccCCcchHHHH
Q 012379 92 SGFHSTITVLKRAFEIATSQTQVEQPLCLECM 123 (465)
Q Consensus 92 ~~ls~~i~~l~~lFdIlSs~s~iDhPLC~eC~ 123 (465)
+-+++.|.-+...=++.|.-++--..+|.=-.
T Consensus 53 ~~i~~k~~e~r~~r~lat~l~~~g~~i~e~ls 84 (338)
T KOG3647|consen 53 SLIGDKIEELRKARELATDLTQRGTTICEMLS 84 (338)
T ss_pred HHHHHHHHHHHHHHHHHhhccccchHHHHHHH
Confidence 34788888887777777777777777776433
No 191
>PRK00106 hypothetical protein; Provisional
Probab=80.23 E-value=63 Score=36.18 Aligned_cols=18 Identities=33% Similarity=0.339 Sum_probs=8.2
Q ss_pred eeeeecCCeeeeccccCCC
Q 012379 258 FPIWHDGEFGTINNFRLGR 276 (465)
Q Consensus 258 F~I~hdG~fGTINGlRLGr 276 (465)
+++-.|.--|-|=| |=||
T Consensus 229 v~lp~demkGriIG-reGr 246 (535)
T PRK00106 229 VHLPDDNMKGRIIG-REGR 246 (535)
T ss_pred EEcCChHhhcceeC-CCcc
Confidence 34444444454544 4444
No 192
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=80.21 E-value=50 Score=39.41 Aligned_cols=16 Identities=19% Similarity=0.273 Sum_probs=11.9
Q ss_pred CchhhHHHHHHHhhHH
Q 012379 402 QENWTKALKYTLCNLK 417 (465)
Q Consensus 402 ~e~WTkAlK~lLtNlK 417 (465)
..+=+.|..+-++|++
T Consensus 563 ~~~~~e~~~~~~~~~r 578 (1072)
T KOG0979|consen 563 KREVEEAIVEVLQNIR 578 (1072)
T ss_pred cccccHHHHHHHhccc
Confidence 3456778888888887
No 193
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=80.11 E-value=65 Score=37.00 Aligned_cols=61 Identities=25% Similarity=0.269 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 012379 171 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEER 231 (465)
Q Consensus 171 Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~ 231 (465)
++..+....++|..|..+...+.+++..+..+...+..+-++.|+..+.++.++.+.....
T Consensus 232 l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l 292 (670)
T KOG0239|consen 232 LEGLESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENL 292 (670)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555566677777777777777777777777777788888888766665544433
No 194
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=80.00 E-value=1.2e+02 Score=36.62 Aligned_cols=21 Identities=29% Similarity=0.512 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 012379 123 MRVLSDKLDKEVDDVTRDIEA 143 (465)
Q Consensus 123 ~d~Lle~L~~qle~~~~E~d~ 143 (465)
.+.|+..+-.+++.+.+|..+
T Consensus 402 K~~llKd~~~EIerLK~dl~A 422 (1041)
T KOG0243|consen 402 KKTLLKDLYEEIERLKRDLAA 422 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 366777777777777666554
No 195
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=79.97 E-value=85 Score=38.22 Aligned_cols=11 Identities=27% Similarity=0.302 Sum_probs=7.1
Q ss_pred CccceeeEEec
Q 012379 388 DKVENYSITQS 398 (465)
Q Consensus 388 dkI~g~SIkl~ 398 (465)
|.+-|++|.+.
T Consensus 581 dslyGl~LdL~ 591 (1201)
T PF12128_consen 581 DSLYGLSLDLS 591 (1201)
T ss_pred cccceeEeehh
Confidence 56667777663
No 196
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=79.84 E-value=16 Score=39.40 Aligned_cols=88 Identities=16% Similarity=0.304 Sum_probs=47.2
Q ss_pred CcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 111 QTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNA 190 (465)
Q Consensus 111 ~s~iDhPLC~eC~d~Lle~L~~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~ 190 (465)
+|.+..-+........++.|+.+++.+..+.......+.++++.........+..+...++.+....+.+++++++.+..
T Consensus 320 ~T~i~vg~~~~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~ 399 (451)
T PF03961_consen 320 KTEIEVGVDRPELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELK 399 (451)
T ss_pred cEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444433334455566777778888777777777777776543211111223334444555555555555555555555
Q ss_pred HHHHHHHH
Q 012379 191 EVNAELKE 198 (465)
Q Consensus 191 ~l~~el~~ 198 (465)
++.+++..
T Consensus 400 ~l~~~l~~ 407 (451)
T PF03961_consen 400 ELKEELER 407 (451)
T ss_pred HHHHHHHh
Confidence 54444433
No 197
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=79.32 E-value=71 Score=32.73 Aligned_cols=31 Identities=26% Similarity=0.386 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 169 LKIEEEERKLEAAIEETEKQNAEVNAELKEL 199 (465)
Q Consensus 169 ~~Le~EE~~L~~eL~~LE~e~~~l~~el~~l 199 (465)
..++.+|..|...|+.-..|.++..+.|..|
T Consensus 186 ~~l~~de~~Le~KIekkk~ELER~qKRL~sL 216 (267)
T PF10234_consen 186 NNLASDEANLEAKIEKKKQELERNQKRLQSL 216 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444333333333
No 198
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=79.31 E-value=7.8 Score=42.01 Aligned_cols=50 Identities=8% Similarity=0.166 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 012379 185 TEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSK 237 (465)
Q Consensus 185 LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q 237 (465)
+.++...+++++.+++. +++..|++||++|..++.-+...+.....|..|
T Consensus 411 l~~~i~~l~~~i~~~~~---rl~~~e~rl~~qF~ame~~~s~mns~~s~L~~q 460 (462)
T PRK08032 411 VNKTLKKLTKQYNAVSD---SIDATIARYKAQFTQLDKLMTSLNSTSSYLTQQ 460 (462)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444445554444443 456788899999999988776665555444443
No 199
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=79.24 E-value=38 Score=30.78 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 012379 128 DKLDKEVDDVTRDIEAYEACLQRLE 152 (465)
Q Consensus 128 e~L~~qle~~~~E~d~Y~~fL~~L~ 152 (465)
+.|+.++..+.-+++.+..-|+.++
T Consensus 16 QqLq~ql~~~~~qk~~le~qL~E~~ 40 (119)
T COG1382 16 QQLQQQLQKVILQKQQLEAQLKEIE 40 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777776666543
No 200
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=79.23 E-value=1e+02 Score=36.55 Aligned_cols=9 Identities=33% Similarity=0.471 Sum_probs=7.1
Q ss_pred eccccCCCC
Q 012379 269 INNFRLGRL 277 (465)
Q Consensus 269 INGlRLGrl 277 (465)
||.++|-+-
T Consensus 563 i~ql~l~~~ 571 (980)
T KOG0980|consen 563 INQLELDSS 571 (980)
T ss_pred HHHhhcccc
Confidence 888888764
No 201
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=79.04 E-value=74 Score=36.78 Aligned_cols=23 Identities=17% Similarity=0.434 Sum_probs=14.3
Q ss_pred CCCChHH----HHHHHH--HHHHHHHHHH
Q 012379 280 IPVEWDE----INAAWG--QACLLLHTMC 302 (465)
Q Consensus 280 ~~V~W~E----INAAwG--Q~~LLL~tla 302 (465)
..-.|+- .|--+| |+.|=...+-
T Consensus 656 ~~tawereE~~l~~rL~dSQtllr~~v~~ 684 (961)
T KOG4673|consen 656 AATAWEREERSLNERLSDSQTLLRINVLE 684 (961)
T ss_pred hhhHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 4556765 778888 7766544433
No 202
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=78.90 E-value=12 Score=34.76 Aligned_cols=30 Identities=27% Similarity=0.459 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 170 KIEEEERKLEAAIEETEKQNAEVNAELKEL 199 (465)
Q Consensus 170 ~Le~EE~~L~~eL~~LE~e~~~l~~el~~l 199 (465)
.+..+...|..++.+++.+...+..|+..|
T Consensus 76 ~ld~ei~~L~~el~~l~~~~k~l~~eL~~L 105 (169)
T PF07106_consen 76 ELDAEIKELREELAELKKEVKSLEAELASL 105 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444
No 203
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=78.58 E-value=30 Score=29.65 Aligned_cols=38 Identities=24% Similarity=0.455 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 164 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELEL 201 (465)
Q Consensus 164 l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~ 201 (465)
...++..+-++.+.+..+++.|..++..+.+++..+..
T Consensus 27 ~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~ 64 (108)
T PF02403_consen 27 DVDEIIELDQERRELQQELEELRAERNELSKEIGKLKK 64 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Confidence 34566677788888888888888888888888877755
No 204
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=78.44 E-value=1.3e+02 Score=34.78 Aligned_cols=84 Identities=18% Similarity=0.220 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH----------H---HHHHHHHhHHHHHHHHH
Q 012379 165 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF----KEL----------E---ERYWQEFNNFQFQLIAH 227 (465)
Q Consensus 165 ~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L----~~~----------E---~~~w~e~n~~q~ql~~~ 227 (465)
.+.+..++........+|..+.++.+.|.+++.....+.... +.+ | ...|.+.-.+......+
T Consensus 175 e~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR~YvGeq~p~~~~~~~we~Er~~L~~tVq~L 254 (739)
T PF07111_consen 175 EKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEAQVTLVEQLRKYVGEQVPPEVHSQAWEPEREELLETVQHL 254 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhCCcccccHHHHHHHHHHHHHHHHH
Confidence 333333444333444555555566666666655554433321 111 0 11245556666777778
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 012379 228 QEERDAISSKIEVSQAHLELL 248 (465)
Q Consensus 228 ~~e~~sl~~q~~~~~~~LdkL 248 (465)
++++++|....+..+..+..|
T Consensus 255 ~edR~~L~~T~ELLqVRvqSL 275 (739)
T PF07111_consen 255 QEDRDALQATAELLQVRVQSL 275 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 899999988888777666554
No 205
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=78.41 E-value=13 Score=31.24 Aligned_cols=76 Identities=29% Similarity=0.377 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccc---------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 129 KLDKEVDDVTRDIEAYEACLQRLEGEARD---------VLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKEL 199 (465)
Q Consensus 129 ~L~~qle~~~~E~d~Y~~fL~~L~~~~~~---------~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~l 199 (465)
.+..++..++.+.+....-++.|..-..+ .+-..+...-...|+...+.+..+++.++++...+..++.++
T Consensus 16 ~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~ 95 (106)
T PF01920_consen 16 QLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKEL 95 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555432111 000011233345567777777777888888777777777777
Q ss_pred HHHHH
Q 012379 200 ELKSK 204 (465)
Q Consensus 200 e~e~~ 204 (465)
+.++.
T Consensus 96 ~~~l~ 100 (106)
T PF01920_consen 96 KKKLY 100 (106)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66543
No 206
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=77.81 E-value=1.1e+02 Score=33.90 Aligned_cols=32 Identities=19% Similarity=0.196 Sum_probs=12.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 217 FNNFQFQLIAHQEERDAISSKIEVSQAHLELL 248 (465)
Q Consensus 217 ~n~~q~ql~~~~~e~~sl~~q~~~~~~~LdkL 248 (465)
....+..|.....+....++--..+..++.-|
T Consensus 409 i~t~E~rL~aa~ke~eaaKasEa~Ala~ik~l 440 (522)
T PF05701_consen 409 IKTAEERLEAALKEAEAAKASEALALAEIKAL 440 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333333444433333333333444433
No 207
>PRK06798 fliD flagellar capping protein; Validated
Probab=77.81 E-value=9.1 Score=41.43 Aligned_cols=52 Identities=8% Similarity=0.252 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 012379 181 AIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAIS 235 (465)
Q Consensus 181 eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~ 235 (465)
+++.++.+...++.++++++. +++..|++||++|+.++..+..++.+...+.
T Consensus 380 r~~~l~~~i~~l~~~~~~~e~---rl~~~e~~l~~qf~ale~~ms~lnsQ~s~l~ 431 (440)
T PRK06798 380 RSKSIDNRVSKLDLKITDIDT---QNKQKQDNIVDKYQKLESTLAALDSQLKTIK 431 (440)
T ss_pred hhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555553 3567788999999999888876655444433
No 208
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=77.71 E-value=60 Score=36.74 Aligned_cols=26 Identities=27% Similarity=0.509 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012379 127 SDKLDKEVDDVTRDIEAYEACLQRLE 152 (465)
Q Consensus 127 le~L~~qle~~~~E~d~Y~~fL~~L~ 152 (465)
++.|+.+++++..++..+...++.+.
T Consensus 330 l~~l~~~l~~l~~~i~~~~~~~~~l~ 355 (594)
T PF05667_consen 330 LEELQEQLDELESQIEELEAEIKMLK 355 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566665555555555555544
No 209
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=77.46 E-value=1.3e+02 Score=33.70 Aligned_cols=38 Identities=11% Similarity=0.141 Sum_probs=20.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012379 213 YWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 250 (465)
Q Consensus 213 ~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~LdkL~k 250 (465)
.-+....++.++..+.+.+++|...-..|...|++++.
T Consensus 384 ~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~ 421 (560)
T PF06160_consen 384 IEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQ 421 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555555555555543
No 210
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=77.16 E-value=79 Score=34.05 Aligned_cols=28 Identities=18% Similarity=0.313 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012379 125 VLSDKLDKEVDDVTRDIEAYEACLQRLE 152 (465)
Q Consensus 125 ~Lle~L~~qle~~~~E~d~Y~~fL~~L~ 152 (465)
...+.|+.|+..++++.+.-+.-|...+
T Consensus 161 ~~~~fl~~ql~~~~~~L~~ae~~l~~f~ 188 (498)
T TIGR03007 161 SAQRFIDEQIKTYEKKLEAAENRLKAFK 188 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666665555554443
No 211
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=76.87 E-value=92 Score=34.55 Aligned_cols=92 Identities=17% Similarity=0.216 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 166 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELE---LKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQ 242 (465)
Q Consensus 166 ~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le---~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~ 242 (465)
..+..+..-.++-...++++-...+++.+++..++ .+.+.|+++.+++++.+...-.++... |...-. ....
T Consensus 308 ~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~---R~~~a~--~l~~ 382 (563)
T TIGR00634 308 ERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAVALSLI---RRKAAE--RLAK 382 (563)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH--HHHH
Confidence 33334444333333355566666666666666654 345555666666666666665555432 222212 2222
Q ss_pred HHHHHHhhcccCCCceeeee
Q 012379 243 AHLELLKRTNVLNDAFPIWH 262 (465)
Q Consensus 243 ~~LdkL~ktNV~Nd~F~I~h 262 (465)
.--..|+..+.-+..|+|..
T Consensus 383 ~v~~~l~~L~m~~~~f~v~~ 402 (563)
T TIGR00634 383 RVEQELKALAMEKAEFTVEI 402 (563)
T ss_pred HHHHHHHhCCCCCcEEEEEE
Confidence 33466778888888998865
No 212
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=76.81 E-value=30 Score=33.32 Aligned_cols=29 Identities=31% Similarity=0.424 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 171 IEEEERKLEAAIEETEKQNAEVNAELKEL 199 (465)
Q Consensus 171 Le~EE~~L~~eL~~LE~e~~~l~~el~~l 199 (465)
++....+|.++++.++.+.+++.+++...
T Consensus 67 ~~~~~~~l~~~~~~~~~~i~~l~~~i~~~ 95 (188)
T PF03962_consen 67 RQNKLEKLQKEIEELEKKIEELEEKIEEA 95 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555544444444444444
No 213
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=76.53 E-value=59 Score=29.44 Aligned_cols=68 Identities=21% Similarity=0.288 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 133 EVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 207 (465)
Q Consensus 133 qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~ 207 (465)
++.++..+-+.+..|+..+.. -.++......+..+-..+.+..-.++.+..++..++...-.+...+.
T Consensus 8 eL~~Ll~d~~~l~~~v~~l~~-------~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~ 75 (150)
T PF07200_consen 8 ELQELLSDEEKLDAFVKSLPQ-------VQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELE 75 (150)
T ss_dssp HHHHHHHH-HHHHHHGGGGS---------HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCHHHHHHHHHcCHH-------HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHH
Confidence 455555555566666654421 12344444555555555555554555555555555444444444443
No 214
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=76.52 E-value=1.3e+02 Score=35.43 Aligned_cols=30 Identities=30% Similarity=0.377 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 120 LECMRVLSDKLDKEVDDVTRDIEAYEACLQ 149 (465)
Q Consensus 120 ~eC~d~Lle~L~~qle~~~~E~d~Y~~fL~ 149 (465)
.++.+.+...+...+..+......+...+.
T Consensus 166 l~~~e~~~~~l~e~~~~~~~~~e~l~~~~~ 195 (908)
T COG0419 166 LEKYEKLSELLKEVIKEAKAKIEELEGQLS 195 (908)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666666666666666655
No 215
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=76.44 E-value=73 Score=32.20 Aligned_cols=10 Identities=20% Similarity=0.245 Sum_probs=5.8
Q ss_pred HHHHHHhhcC
Q 012379 101 LKRAFEIATS 110 (465)
Q Consensus 101 l~~lFdIlSs 110 (465)
..+.|+-|++
T Consensus 75 A~kf~eeLrg 84 (290)
T COG4026 75 AEKFFEELRG 84 (290)
T ss_pred HHHHHHHHHH
Confidence 4456666665
No 216
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=76.31 E-value=17 Score=29.24 Aligned_cols=42 Identities=24% Similarity=0.421 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 165 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 206 (465)
Q Consensus 165 ~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L 206 (465)
.+|+.+....-..+...|.+.++...++.++|..|+.+.+++
T Consensus 17 ~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 17 QEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555566667777777777777777776665544
No 217
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=76.27 E-value=52 Score=32.47 Aligned_cols=42 Identities=17% Similarity=0.383 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 012379 176 RKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNF 220 (465)
Q Consensus 176 ~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~ 220 (465)
..++.||+.++.+.++-. +........+-+-|-++++.+..|
T Consensus 145 ~~~eeElr~Ae~kfees~---E~a~~~M~~i~~~e~e~~~~L~~l 186 (215)
T cd07593 145 SRLEEELRRAKAKYEESS---EDVEARMVAIKESEADQYRDLTDL 186 (215)
T ss_pred hhHHHHHHHHHHHHHHHH---HHHHHHHHHHHhcChHHHHHHHHH
Confidence 344555555444444322 233333334444455566666555
No 218
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=76.16 E-value=15 Score=39.59 Aligned_cols=75 Identities=19% Similarity=0.232 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 173 EEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELL 248 (465)
Q Consensus 173 ~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~LdkL 248 (465)
++.++|.++++++..+.+++++.+..++.... ......+.-..+..+...+..+.+++..+..++...+.++++.
T Consensus 334 ~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 334 EKLEELEEELEELKEELEKLKKNLKKLKKLKK-QGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc-cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344444444444444444444444443211 1111112234455555556666666667777777777777766
No 219
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.99 E-value=30 Score=34.99 Aligned_cols=50 Identities=18% Similarity=0.272 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeeecCCeeeeccccCCCCC
Q 012379 227 HQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLP 278 (465)
Q Consensus 227 ~~~e~~sl~~q~~~~~~~LdkL~ktNV~Nd~F~I~hdG~fGTINGlRLGrlp 278 (465)
+.+.++.+-|.+..+.++.-...-.-|-+++ .|.+.|+|-||||-|+ ..|
T Consensus 137 ~~~dl~~viNeL~~sGAEaIsIn~~RI~~~t-~Ir~v~g~~~vdg~~~-~~P 186 (247)
T COG3879 137 HDDDLQAVINELNISGAEAISINGQRIGSNT-TIRCVGGTLLVDGRRL-SAP 186 (247)
T ss_pred CHHHHHHHHHHHHhccchheeECCEEeecce-EEEecCCeEEECCeec-CCC
Confidence 4445555555555555544444433344433 3666789999999999 443
No 220
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=75.90 E-value=65 Score=32.98 Aligned_cols=26 Identities=8% Similarity=0.335 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 171 IEEEERKLEAAIEETEKQNAEVNAEL 196 (465)
Q Consensus 171 Le~EE~~L~~eL~~LE~e~~~l~~el 196 (465)
+..+-....+.|..+..+.+.|+..|
T Consensus 174 ~~~~~~~~~~~l~~l~~de~~Le~KI 199 (267)
T PF10234_consen 174 VQQQLQQTQQQLNNLASDEANLEAKI 199 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433
No 221
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=75.85 E-value=90 Score=36.49 Aligned_cols=78 Identities=21% Similarity=0.353 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012379 171 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 250 (465)
Q Consensus 171 Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~LdkL~k 250 (465)
+++|-+++...+.+-+++..+-.+ ..+.|..+++.+=++-...+-.+++.|...+.|...|..-+++-..++.||+.
T Consensus 467 q~~Enk~~~~~~~ekd~~l~~~kq---~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~e 543 (861)
T PF15254_consen 467 QKEENKRLRKMFQEKDQELLENKQ---QFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRE 543 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHH
Confidence 344444444444444443333222 12334444544444567788888999999888888888777777777777765
Q ss_pred c
Q 012379 251 T 251 (465)
Q Consensus 251 t 251 (465)
.
T Consensus 544 L 544 (861)
T PF15254_consen 544 L 544 (861)
T ss_pred H
Confidence 3
No 222
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=75.82 E-value=42 Score=30.16 Aligned_cols=44 Identities=14% Similarity=0.272 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 164 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 207 (465)
Q Consensus 164 l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~ 207 (465)
+.+.+.-|+...+.+...++.++++...+.+++..+.....++.
T Consensus 92 ~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~ 135 (140)
T PRK03947 92 LDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQ 135 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555666666666666666666655555554443
No 223
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=75.79 E-value=1.8e+02 Score=34.78 Aligned_cols=18 Identities=17% Similarity=0.259 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 012379 286 EINAAWGQACLLLHTMCQ 303 (465)
Q Consensus 286 EINAAwGQ~~LLL~tla~ 303 (465)
-|.||+|-=.+.=..--+
T Consensus 439 QVDAAlGAE~MV~qLtdk 456 (1243)
T KOG0971|consen 439 QVDAALGAEEMVEQLTDK 456 (1243)
T ss_pred HHHHhhcHHHHHHHHHhh
Confidence 377888866665443333
No 224
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=75.53 E-value=43 Score=27.39 Aligned_cols=35 Identities=26% Similarity=0.249 Sum_probs=20.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012379 215 QEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 249 (465)
Q Consensus 215 ~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~LdkL~ 249 (465)
++.+.+..++...-.+...|....+....+|+.++
T Consensus 33 ~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 33 RERDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444555555555556666666666666666554
No 225
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=75.06 E-value=62 Score=30.23 Aligned_cols=84 Identities=17% Similarity=0.285 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cc--c----------------CC------------CHHHHHHHHHH
Q 012379 124 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGE---AR--D----------------VL------------SEADFLKEKLK 170 (465)
Q Consensus 124 d~Lle~L~~qle~~~~E~d~Y~~fL~~L~~~---~~--~----------------~~------------~ee~l~~e~~~ 170 (465)
+..++.|+.++..+..-+..++.+++-|+.- .. + .. -+.++.+..+-
T Consensus 19 ~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~~g~E~LVpvGag~fv~~kv~~~~kviV~iGsg~~ae~~~~eAie~ 98 (145)
T COG1730 19 QSQIESLQAQIAALNAAISELQTAIETLENLKGAGEGKEVLVPVGAGLFVKAKVKDMDKVIVSIGSGYYAEKSADEAIEF 98 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceEEEEeccCceEEEEcCCceeeeecHHHHHHH
Confidence 3456777777777777777777777665421 10 0 00 01223444445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 171 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 207 (465)
Q Consensus 171 Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~ 207 (465)
|++..++|.+.++.++.+.+++.+.+..++.+...+.
T Consensus 99 l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~ 135 (145)
T COG1730 99 LKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQ 135 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555666666666666666555555555554443
No 226
>PRK09343 prefoldin subunit beta; Provisional
Probab=74.98 E-value=47 Score=29.71 Aligned_cols=33 Identities=33% Similarity=0.422 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 171 IEEEERKLEAAIEETEKQNAEVNAELKELELKS 203 (465)
Q Consensus 171 Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~ 203 (465)
+++..+-+..+|+.+|++...+...+.+++.++
T Consensus 76 l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l 108 (121)
T PRK09343 76 LKERKELLELRSRTLEKQEKKLREKLKELQAKI 108 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555555544444444443
No 227
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=74.92 E-value=1.6e+02 Score=33.50 Aligned_cols=18 Identities=28% Similarity=0.445 Sum_probs=12.9
Q ss_pred CCcchHHHHHHHHHHHHH
Q 012379 115 EQPLCLECMRVLSDKLDK 132 (465)
Q Consensus 115 DhPLC~eC~d~Lle~L~~ 132 (465)
..|--+||..+|.+..+-
T Consensus 553 SsP~~~E~~~lL~~a~~v 570 (741)
T KOG4460|consen 553 SAPPPEECLQLLSRATQV 570 (741)
T ss_pred cCCCcHHHHHHHHHHHHH
Confidence 345588999998876543
No 228
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=74.83 E-value=1.6e+02 Score=36.03 Aligned_cols=17 Identities=29% Similarity=0.016 Sum_probs=11.5
Q ss_pred CCChHHHHHHHHHHHHH
Q 012379 281 PVEWDEINAAWGQACLL 297 (465)
Q Consensus 281 ~V~W~EINAAwGQ~~LL 297 (465)
-..--|+|.+++|...=
T Consensus 260 i~~~~~~N~~Ls~~L~~ 276 (1109)
T PRK10929 260 IVAQFKINRELSQALNQ 276 (1109)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34556889888876543
No 229
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=74.78 E-value=50 Score=31.78 Aligned_cols=27 Identities=33% Similarity=0.465 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 173 EEERKLEAAIEETEKQNAEVNAELKEL 199 (465)
Q Consensus 173 ~EE~~L~~eL~~LE~e~~~l~~el~~l 199 (465)
.+...+.+++++|+++.+++.+++..+
T Consensus 103 ~eR~~~l~~l~~l~~~~~~l~~el~~~ 129 (188)
T PF03962_consen 103 EEREELLEELEELKKELKELKKELEKY 129 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445566666666666666655544
No 230
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=74.19 E-value=1.4e+02 Score=32.80 Aligned_cols=12 Identities=25% Similarity=0.676 Sum_probs=6.5
Q ss_pred CChHHHHHHHHH
Q 012379 282 VEWDEINAAWGQ 293 (465)
Q Consensus 282 V~W~EINAAwGQ 293 (465)
-+|+|+-.-+=+
T Consensus 385 s~~~elE~rl~~ 396 (511)
T PF09787_consen 385 SSWNELESRLTQ 396 (511)
T ss_pred CCcHhHHHHHhh
Confidence 357776554433
No 231
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=74.06 E-value=84 Score=35.23 Aligned_cols=106 Identities=16% Similarity=0.283 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-------CCCceeeee
Q 012379 190 AEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNV-------LNDAFPIWH 262 (465)
Q Consensus 190 ~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~LdkL~ktNV-------~Nd~F~I~h 262 (465)
..+...+.+++..+...+..-.++-..++.+..+-.+..+.+..+..++.-... .+.|.|+ +...|+++|
T Consensus 378 S~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~eikR---~mek~nLPGlPe~~l~l~~~~~~ 454 (570)
T COG4477 378 SELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEIKR---YMEKSNLPGLPETFLSLFFTAGH 454 (570)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHcCCCCCcHHHHHHHHhhhh
Confidence 344455555555555555555556666666665555555555555444444432 3445564 335566666
Q ss_pred cCCeeeeccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHhh
Q 012379 263 DGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQY 304 (465)
Q Consensus 263 dG~fGTINGlRLGrlp~~~V~W~EINAAwGQ~~LLL~tla~~ 304 (465)
.=. .+++ +|++ +|+.-..+++-|-++.-.++++...
T Consensus 455 ~i~-~l~~--eLse---~pinm~~v~~~v~~a~~~m~~l~~~ 490 (570)
T COG4477 455 EIQ-DLMK--ELSE---VPINMEAVSALVDIATEDMNTLEDE 490 (570)
T ss_pred HHH-HHHH--HHhh---cCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 421 1222 3444 5889999999999998888766543
No 232
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=73.89 E-value=67 Score=28.84 Aligned_cols=21 Identities=19% Similarity=0.528 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 012379 132 KEVDDVTRDIEAYEACLQRLE 152 (465)
Q Consensus 132 ~qle~~~~E~d~Y~~fL~~L~ 152 (465)
.++++.....+.|...++.|.
T Consensus 6 ~~l~~l~~~~~~l~~~~~~l~ 26 (140)
T PRK03947 6 QELEELAAQLQALQAQIEALQ 26 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445554444443
No 233
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=73.87 E-value=1e+02 Score=31.02 Aligned_cols=56 Identities=11% Similarity=0.414 Sum_probs=28.1
Q ss_pred cchhHHHHHHHHHhhcC-CcccCCcc-----hHH-HHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 012379 94 FHSTITVLKRAFEIATS-QTQVEQPL-----CLE-CMRVLSDKL---DKEVDDVTRDIEAYEACLQ 149 (465)
Q Consensus 94 ls~~i~~l~~lFdIlSs-~s~iDhPL-----C~e-C~d~Lle~L---~~qle~~~~E~d~Y~~fL~ 149 (465)
++-.......+|..+|+ ..++.-|| |.| |+..+-+++ ...+.+..+|.-.|..-++
T Consensus 87 y~~~~~~fgk~~~lws~~E~~L~~~L~~~a~~~d~~~~~~~~~~~~l~~~f~~~Lkeyv~y~~slK 152 (243)
T cd07666 87 YFEELKEYGPIYTLWSASEEELADSLKGMASCIDRCCKATDKRMKGLSEQLLPVIHEYVLYSETLM 152 (243)
T ss_pred HHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556677777764 55677775 333 333444433 3344444444444444443
No 234
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=73.83 E-value=1.2e+02 Score=31.63 Aligned_cols=33 Identities=27% Similarity=0.109 Sum_probs=15.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 216 EFNNFQFQLIAHQEERDAISSKIEVSQAHLELL 248 (465)
Q Consensus 216 e~n~~q~ql~~~~~e~~sl~~q~~~~~~~LdkL 248 (465)
+...+..++.++++++..+...++....+...+
T Consensus 219 ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~ 251 (312)
T smart00787 219 EIMIKVKKLEELEEELQELESKIEDLTNKKSEL 251 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444555555555555555444444433
No 235
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=73.52 E-value=1.9e+02 Score=33.92 Aligned_cols=8 Identities=25% Similarity=0.497 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 012379 178 LEAAIEET 185 (465)
Q Consensus 178 L~~eL~~L 185 (465)
|..+++.|
T Consensus 341 Lqsdve~L 348 (775)
T PF10174_consen 341 LQSDVEAL 348 (775)
T ss_pred HHHhHHHH
Confidence 33333333
No 236
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=73.50 E-value=1.3e+02 Score=35.62 Aligned_cols=50 Identities=28% Similarity=0.360 Sum_probs=27.5
Q ss_pred HHHHHHHHHhhcCCcccCCcchHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Q 012379 98 ITVLKRAFEIATSQTQVEQPLCLECMRV-----LSDKLDKEVDDVTRDIEAYEACL 148 (465)
Q Consensus 98 i~~l~~lFdIlSs~s~iDhPLC~eC~d~-----Lle~L~~qle~~~~E~d~Y~~fL 148 (465)
-+++.++- -||++.+.=-|+=..|+.+ -++.+-+.+++..++.++...-|
T Consensus 228 q~vl~ev~-QLss~~q~ltp~rk~~s~i~E~d~~lq~sak~ieE~m~qlk~kns~L 282 (1265)
T KOG0976|consen 228 QKVLKEVM-QLSSQKQTLTPLRKTCSMIEEQDMDLQASAKEIEEKMRQLKAKNSVL 282 (1265)
T ss_pred HHHHHHHH-HHHHhHhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443 3567777778888889754 23333444455555554444333
No 237
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.45 E-value=1.1e+02 Score=34.41 Aligned_cols=31 Identities=13% Similarity=0.040 Sum_probs=19.4
Q ss_pred HHHhhHHHHHHHHhhCCccCCccccCCCccc
Q 012379 411 YTLCNLKWALFWFVGNTNFQPVSAMSSPAEV 441 (465)
Q Consensus 411 ~lLtNlKwlLaw~~~~t~~~~~~~~~~~~~~ 441 (465)
-++..+||...+.+.+....-+..++-++.+
T Consensus 601 ~~~~~~k~~~~~ql~~~~~~~~~~~~ln~~d 631 (654)
T KOG4809|consen 601 TLAECLKWLTTFQLVSIGLAAVAMDVLNTGD 631 (654)
T ss_pred HHHHHHccccHHHHHHHHHHhcccCCCCCCc
Confidence 3567889999888876665544444334333
No 238
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=73.36 E-value=36 Score=38.78 Aligned_cols=24 Identities=33% Similarity=0.441 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 184 ETEKQNAEVNAELKELELKSKRFK 207 (465)
Q Consensus 184 ~LE~e~~~l~~el~~le~e~~~L~ 207 (465)
.||.++-+|.+|+.+|+.+...++
T Consensus 171 sLETqKlDLmaevSeLKLkltalE 194 (861)
T KOG1899|consen 171 SLETQKLDLMAEVSELKLKLTALE 194 (861)
T ss_pred hHHHHHhHHHHHHHHhHHHHHHHH
Confidence 466666666666666666555554
No 239
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=73.30 E-value=97 Score=30.38 Aligned_cols=58 Identities=16% Similarity=0.202 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 012379 171 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQ 228 (465)
Q Consensus 171 Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~ 228 (465)
-+....+|...|.-...+..++.........|...|+.+-...-..++.++.++..++
T Consensus 124 ~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq 181 (192)
T PF11180_consen 124 SEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQ 181 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566777777777777777777777777777777666655555555555554443
No 240
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.19 E-value=47 Score=36.10 Aligned_cols=47 Identities=26% Similarity=0.338 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 161 EADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 207 (465)
Q Consensus 161 ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~ 207 (465)
.+++..+.++-.+.+++|..=.--.|++.+++.+.+.+.+..+++|.
T Consensus 136 ~~~Lenem~ka~Ed~eKlrelv~pmekeI~elk~kl~~aE~~i~El~ 182 (542)
T KOG0993|consen 136 QLDLENEMDKAKEDEEKLRELVTPMEKEINELKKKLAKAEQRIDELS 182 (542)
T ss_pred hhhhHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHH
Confidence 46777888888888888777777788888888887777776665554
No 241
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=72.78 E-value=1.7e+02 Score=35.26 Aligned_cols=16 Identities=19% Similarity=0.285 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 012379 128 DKLDKEVDDVTRDIEA 143 (465)
Q Consensus 128 e~L~~qle~~~~E~d~ 143 (465)
..|.++.++++..+..
T Consensus 411 KnLs~k~e~Leeri~q 426 (1195)
T KOG4643|consen 411 KNLSKKHEILEERINQ 426 (1195)
T ss_pred HhHhHHHHHHHHHHHH
Confidence 3344444444444433
No 242
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=72.59 E-value=1.8e+02 Score=33.07 Aligned_cols=64 Identities=25% Similarity=0.286 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 012379 172 EEEERKLEAAIEETEKQNAEVNAELKELELKSKRF-------KELEERYWQEFNNFQFQLIAHQEERDAIS 235 (465)
Q Consensus 172 e~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L-------~~~E~~~w~e~n~~q~ql~~~~~e~~sl~ 235 (465)
+.+++.+.++++.|.++..+.+.++.........| ++...---+++...+.++.++|++.+..+
T Consensus 413 ~~~~~~~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~qee~~s~~~~~~e~~q~e~~~~Q~~~e~~~ 483 (607)
T KOG0240|consen 413 EEEEDILTERIESLYQQLDQKDDQINKQSQLMEKLKEQLLDQEELLSSTRRLYEDIQQELSEIQEENEAAK 483 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777788888887777776665543222222 22222344566666666666666544443
No 243
>PRK10869 recombination and repair protein; Provisional
Probab=72.45 E-value=1.7e+02 Score=32.74 Aligned_cols=78 Identities=15% Similarity=0.137 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCc
Q 012379 181 AIEETEKQNAEVNAELKELE---LKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDA 257 (465)
Q Consensus 181 eL~~LE~e~~~l~~el~~le---~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~LdkL~ktNV~Nd~ 257 (465)
.++++-.-.+++.+++..++ .....|+.+.++.++.+...-.+|. ..|...-.++. ..=...|+..+.=+..
T Consensus 318 ~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS---~~R~~aA~~l~--~~v~~~L~~L~m~~a~ 392 (553)
T PRK10869 318 SPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLH---QSRQRYAKELA--QLITESMHELSMPHGK 392 (553)
T ss_pred CHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH--HHHHHHHHHcCCCCcE
Confidence 34455555555555555553 3344444444444454444443332 22222222222 2224678888899999
Q ss_pred eeeeec
Q 012379 258 FPIWHD 263 (465)
Q Consensus 258 F~I~hd 263 (465)
|+|...
T Consensus 393 f~v~~~ 398 (553)
T PRK10869 393 FTIDVK 398 (553)
T ss_pred EEEEEe
Confidence 998863
No 244
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=72.40 E-value=1.2e+02 Score=35.92 Aligned_cols=54 Identities=22% Similarity=0.300 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeee
Q 012379 208 ELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIW 261 (465)
Q Consensus 208 ~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~LdkL~ktNV~Nd~F~I~ 261 (465)
..|++|-.+...+.-.+.+...+++++.++++.....+-.-+.--+.-+-|...
T Consensus 995 Rh~kefE~~mrdhrselEe~kKe~eaiineiee~eaeIiQekE~el~e~efka~ 1048 (1424)
T KOG4572|consen 995 RHEKEFEIEMRDHRSELEEKKKELEAIINEIEELEAEIIQEKEGELIEDEFKAL 1048 (1424)
T ss_pred HHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHhhhc
Confidence 445556666666777777777777778787777766665555555555555543
No 245
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=72.36 E-value=1e+02 Score=33.62 Aligned_cols=31 Identities=26% Similarity=0.354 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 012379 192 VNAELKELELKSKRFKELEERYWQEFNNFQF 222 (465)
Q Consensus 192 l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ 222 (465)
+.+++...+++..+++++|++.|..-|.-+.
T Consensus 370 ~~~rl~~ie~~~~~l~e~e~~lwffen~~~i 400 (429)
T PF10037_consen 370 RKERLEEIEKEDKELYEQEQQLWFFENEDKI 400 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 6677788888888999999999987777554
No 246
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=72.34 E-value=68 Score=28.20 Aligned_cols=89 Identities=13% Similarity=0.219 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 128 DKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADF---LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSK 204 (465)
Q Consensus 128 e~L~~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l---~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~ 204 (465)
+....+++.+...+..|..-+...... .++...+ ..=+..|..........+..++.+.+.....+.+...+.+
T Consensus 30 ~~~~~~l~~l~~~~~~~~~~~~~~~~~---g~~~~~l~~~~~f~~~l~~~i~~q~~~l~~~~~~~e~~r~~l~~a~~~~k 106 (141)
T TIGR02473 30 ERLETQLQQLIKYREEYEQQALEKVGA---GTSALELSNYQRFIRQLDQRIQQQQQELALLQQEVEAKRERLLEARRELK 106 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555443322211 2333332 2334557777777778888888888888888888888888
Q ss_pred HHHHHHHHHHHHHhH
Q 012379 205 RFKELEERYWQEFNN 219 (465)
Q Consensus 205 ~L~~~E~~~w~e~n~ 219 (465)
.++.+-++...++..
T Consensus 107 ~lekL~ek~~~~~~~ 121 (141)
T TIGR02473 107 ALEKLKEKKQKEYRA 121 (141)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888776655555543
No 247
>PF15294 Leu_zip: Leucine zipper
Probab=72.20 E-value=98 Score=31.97 Aligned_cols=79 Identities=22% Similarity=0.305 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHhHHHHH
Q 012379 164 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF--------------------KELEERYWQEFNNFQFQ 223 (465)
Q Consensus 164 l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L--------------------~~~E~~~w~e~n~~q~q 223 (465)
+.+|+.+|.+|-.+|...|..+|++......|-..++.++..+ .++|...-.--+.|+..
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~ek~ 209 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELEKA 209 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHHH
Confidence 5678888888888888888888765554444444444333333 23455444444555554
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 012379 224 LIAHQEERDAISSKIEVSQ 242 (465)
Q Consensus 224 l~~~~~e~~sl~~q~~~~~ 242 (465)
+........+|+.-+..+.
T Consensus 210 ~~d~~~~~k~L~e~L~~~K 228 (278)
T PF15294_consen 210 LQDKESQQKALEETLQSCK 228 (278)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444333
No 248
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=72.18 E-value=1.3e+02 Score=31.27 Aligned_cols=23 Identities=13% Similarity=0.432 Sum_probs=16.7
Q ss_pred CCccccchhHHHHHHHHHHHHHH
Q 012379 339 NLFWSTRYDKAMTLFLSCLKDFA 361 (465)
Q Consensus 339 ~lf~~~kFD~AM~afL~cl~q~~ 361 (465)
+.+|-++|+.+-.++++.+.+-.
T Consensus 260 ~~~~k~k~e~~n~~l~~m~eer~ 282 (309)
T PF09728_consen 260 NQTWKSKWEKSNKALIEMAEERQ 282 (309)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHH
Confidence 36677888888888888776643
No 249
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=72.12 E-value=1.4e+02 Score=31.61 Aligned_cols=17 Identities=6% Similarity=0.253 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 012379 127 SDKLDKEVDDVTRDIEA 143 (465)
Q Consensus 127 le~L~~qle~~~~E~d~ 143 (465)
+..|..++.+++.++..
T Consensus 256 i~~l~~~l~~le~~l~~ 272 (444)
T TIGR03017 256 IQNLKTDIARAESKLAE 272 (444)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444433
No 250
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=72.05 E-value=1.1e+02 Score=34.88 Aligned_cols=14 Identities=14% Similarity=0.434 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHH
Q 012379 351 TLFLSCLKDFAEFA 364 (465)
Q Consensus 351 ~afL~cl~q~~~~~ 364 (465)
..|++++.+.++-.
T Consensus 421 ~~f~~~~~e~adl~ 434 (617)
T PF15070_consen 421 SRFMDLMEEKADLK 434 (617)
T ss_pred HHHHHHHHHHhhHH
Confidence 35777777765543
No 251
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=71.90 E-value=1.9e+02 Score=33.12 Aligned_cols=29 Identities=21% Similarity=0.059 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012379 221 QFQLIAHQEERDAISSKIEVSQAHLELLK 249 (465)
Q Consensus 221 q~ql~~~~~e~~sl~~q~~~~~~~LdkL~ 249 (465)
+.++.+++.+.+.....|+....+++.++
T Consensus 375 ~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~ 403 (754)
T TIGR01005 375 QVDLDALQRDAAAKRQLYESYLTNYRQAA 403 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555566666555555544
No 252
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=71.73 E-value=1.2e+02 Score=34.57 Aligned_cols=19 Identities=11% Similarity=0.067 Sum_probs=10.6
Q ss_pred CCCCCCC-ChHHHHHHHHHH
Q 012379 276 RLPKIPV-EWDEINAAWGQA 294 (465)
Q Consensus 276 rlp~~~V-~W~EINAAwGQ~ 294 (465)
..|..|+ |..=.+.+.|-+
T Consensus 420 ~~P~~P~~P~~~~~l~~~~~ 439 (754)
T TIGR01005 420 SVPSEPYFPKKGPIVGLAAV 439 (754)
T ss_pred cCCCCCCCCchHHHHHHHHH
Confidence 3555565 445556666653
No 253
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=71.14 E-value=1e+02 Score=29.88 Aligned_cols=76 Identities=24% Similarity=0.355 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH---HHHHHHhHHHHHHHHHHHHHHHHHH
Q 012379 167 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF-------KELEE---RYWQEFNNFQFQLIAHQEERDAISS 236 (465)
Q Consensus 167 e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L-------~~~E~---~~w~e~n~~q~ql~~~~~e~~sl~~ 236 (465)
.+..+..|-.+|.+-|..++.+.+++..++...+.....| ...++ ..=.++..+...+...+.||+.|..
T Consensus 49 ~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~ 128 (201)
T PF13851_consen 49 LMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYR 128 (201)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555555555555555554444332222 11222 1122344444555566666666666
Q ss_pred HHHHHH
Q 012379 237 KIEVSQ 242 (465)
Q Consensus 237 q~~~~~ 242 (465)
++..+-
T Consensus 129 kf~~~i 134 (201)
T PF13851_consen 129 KFESAI 134 (201)
T ss_pred HHHHHH
Confidence 655543
No 254
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=71.10 E-value=59 Score=31.91 Aligned_cols=13 Identities=23% Similarity=0.437 Sum_probs=5.4
Q ss_pred HHHHHHhhcCCCC
Q 012379 297 LLHTMCQYFRPKF 309 (465)
Q Consensus 297 LL~tla~~l~~~f 309 (465)
+|.-+.++|-..|
T Consensus 137 iLt~viQ~LP~sF 149 (228)
T PRK06800 137 ILTGIVQTLPTSF 149 (228)
T ss_pred HHHHHHHHcchhH
Confidence 3444444443333
No 255
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=71.03 E-value=1.1e+02 Score=30.04 Aligned_cols=43 Identities=30% Similarity=0.446 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 164 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 206 (465)
Q Consensus 164 l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L 206 (465)
+.++-..+|.|-..|..++..|..+...+..+...+......|
T Consensus 86 L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL 128 (193)
T PF14662_consen 86 LLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKEL 128 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHH
Confidence 3444455666666666666666666666666666666555555
No 256
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=70.80 E-value=16 Score=37.98 Aligned_cols=17 Identities=24% Similarity=0.411 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHhhcCC
Q 012379 290 AWGQACLLLHTMCQYFRP 307 (465)
Q Consensus 290 AwGQ~~LLL~tla~~l~~ 307 (465)
-.|-++|.-.+|+ |+|+
T Consensus 310 l~GD~llaaa~is-Y~G~ 326 (344)
T PF12777_consen 310 LVGDSLLAAAFIS-YLGP 326 (344)
T ss_dssp HHHHHHHHHHHHH-CCCC
T ss_pred cHHHHHHHHHHHH-HcCC
Confidence 3444444444333 6663
No 257
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=70.79 E-value=39 Score=32.31 Aligned_cols=69 Identities=20% Similarity=0.291 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 012379 178 LEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLN 255 (465)
Q Consensus 178 L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~LdkL~ktNV~N 255 (465)
+.+.++.|+.+.+.+.++|.+|+.....+.+.= -..||..|..|.+.+..++......+.++...++--
T Consensus 83 ~~~R~~lLe~~~~~l~~ri~eLe~~l~~kad~v---------vsYqll~hr~e~ee~~~~l~~le~~~~~~e~~~~~~ 151 (175)
T PRK13182 83 SSVDFEQLEAQLNTITRRLDELERQLQQKADDV---------VSYQLLQHRREMEEMLERLQKLEARLKKLEPIYITP 151 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 345566677777777777777776666554332 235677788888888888888888888887766544
No 258
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=70.63 E-value=1.3e+02 Score=35.30 Aligned_cols=9 Identities=22% Similarity=0.194 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 012379 351 TLFLSCLKD 359 (465)
Q Consensus 351 ~afL~cl~q 359 (465)
...|+.+.+
T Consensus 602 t~~lel~~~ 610 (1118)
T KOG1029|consen 602 TKALELIGE 610 (1118)
T ss_pred HHHHHHHhh
Confidence 333343333
No 259
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=70.37 E-value=6.7 Score=44.72 Aligned_cols=125 Identities=24% Similarity=0.311 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC-CCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 124 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDV-LSEAD------FLKEKLKIEEEERKLEAAIEETEKQNAEVNAEL 196 (465)
Q Consensus 124 d~Lle~L~~qle~~~~E~d~Y~~fL~~L~~~~~~~-~~ee~------l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el 196 (465)
..++..|+++..-+.+||+.|+.-|+....+.... .+..+ +..-.+.++....++..+|+.++++........
T Consensus 398 ~~~~~RLerq~~L~~kE~d~LR~~L~syd~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ele~~l~~l~~~l~~~k~~~ 477 (722)
T PF05557_consen 398 KKLIRRLERQKALATKERDYLRAQLKSYDKEETTMNPSEQDTQRIKEIEDLEQLVDEYKAELEAQLEELEEELSEQKQRN 477 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 45777888999999999999999998876543211 11001 000011122222333334455554444333322
Q ss_pred HHHHHHHHHHHHHH---H----HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 197 KELELKSKRFKELE---E----RYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELL 248 (465)
Q Consensus 197 ~~le~e~~~L~~~E---~----~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~LdkL 248 (465)
..++.+...+.... . .+=..++.++.+...++.++..+..++.....+|+++
T Consensus 478 ~~~~~e~~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~ 536 (722)
T PF05557_consen 478 ETLEAELKSLKEQLSSNDRSLSSLSEELNELQKEIEELERENERLRQELEELESELEKL 536 (722)
T ss_dssp ----------------HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333332111 1 1345677788888888888888888888888888874
No 260
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=70.36 E-value=40 Score=27.54 Aligned_cols=32 Identities=16% Similarity=0.170 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 171 IEEEERKLEAAIEETEKQNAEVNAELKELELK 202 (465)
Q Consensus 171 Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e 202 (465)
|+.--..|....++|..|...+.+++..++.|
T Consensus 5 Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~E 36 (65)
T TIGR02449 5 LAAQVEHLLEYLERLKSENRLLRAQEKTWREE 36 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444333
No 261
>COG1345 FliD Flagellar capping protein [Cell motility and secretion]
Probab=70.29 E-value=16 Score=40.29 Aligned_cols=54 Identities=26% Similarity=0.388 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012379 186 EKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 249 (465)
Q Consensus 186 E~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~LdkL~ 249 (465)
.++...++.+++.+. ++++..|++||..||.+...+...+ .|..+.++++..++
T Consensus 428 ~~~i~~l~~~i~~~~---~rl~~~e~~~~~qf~~m~~~~~~m~-------sq~~~L~q~l~~~~ 481 (483)
T COG1345 428 NKQIKSLDKDIKSLD---KRLEAAEERYKTQFNTLDDMMTQMN-------SQSSYLTQQLVSVS 481 (483)
T ss_pred hHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhcc
Confidence 344444444444444 2467889999999999987775544 45555555555443
No 262
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=70.29 E-value=1.2e+02 Score=31.62 Aligned_cols=148 Identities=19% Similarity=0.310 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcCCcccCCcchHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHhcccc-------
Q 012379 99 TVLKRAFEIATSQTQVEQPLCLECMRVLSDKLDKEV---------------DDVTRDIEAYEACLQRLEGEAR------- 156 (465)
Q Consensus 99 ~~l~~lFdIlSs~s~iDhPLC~eC~d~Lle~L~~ql---------------e~~~~E~d~Y~~fL~~L~~~~~------- 156 (465)
.+|...|+-..+--+||-|+| |-|-+.|...+ -++--.--.|..|.+.+..-..
T Consensus 176 ~rlr~a~eafg~ir~vdipic----dplr~~mn~kisgiq~~gfg~g~dlffeayvqfmeykgfa~amdalr~~k~akk~ 251 (445)
T KOG2891|consen 176 DRLRKAFEAFGEIRNVDIPIC----DPLREEMNGKISGIQFHGFGFGGDLFFEAYVQFMEYKGFAQAMDALRGMKLAKKG 251 (445)
T ss_pred HHHHHHHHHhccceecCCccc----chhHHHhcCccccceeeccccCcchhHHHHHHHHHHHhHHHHHHHHhcchHHhhc
Q ss_pred ----------------cCCCHHHH--------HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 157 ----------------DVLSEADF--------LKEKLKIEEEERKL---EAAIEETEKQNAEVNAELKELELKSKRFKEL 209 (465)
Q Consensus 157 ----------------~~~~ee~l--------~~e~~~Le~EE~~L---~~eL~~LE~e~~~l~~el~~le~e~~~L~~~ 209 (465)
..+++-.+ +-|-+.|.+||++| .++--.+..+...-+.-+.+.+.+..+|+.+
T Consensus 252 d~~ffqanvkvdfdrsrhlsevqiakraeerrqieterlrqeeeelnikk~e~~kikqe~ddkdk~~ed~e~kkrqlerq 331 (445)
T KOG2891|consen 252 DDGFFQANVKVDFDRSRHLSEVQIAKRAEERRQIETERLRQEEEELNIKKAEACKIKQEFDDKDKHLEDAEIKKRQLERQ 331 (445)
T ss_pred CCcccccccccccchhhhhhHHHHHHHHHHHhhhhHHHHhhhHhhhhhhHHHhhchhhhcCcccchhhHHHHHHHHHHHH
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012379 210 EERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 250 (465)
Q Consensus 210 E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~LdkL~k 250 (465)
|.+-......-+....+-.+|++..+.+-+.-..++++-++
T Consensus 332 ekqeleqmaeeekkr~eeaeerqraeekeq~eaee~~ra~k 372 (445)
T KOG2891|consen 332 EKQELEQMAEEEKKREEEAEERQRAEEKEQKEAEELERARK 372 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
No 263
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=69.98 E-value=1.2e+02 Score=31.92 Aligned_cols=43 Identities=23% Similarity=0.228 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 164 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 206 (465)
Q Consensus 164 l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L 206 (465)
+.+.+++++..|+.|-.+|+-|-++..++..++.+++...+++
T Consensus 257 it~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~ 299 (384)
T KOG0972|consen 257 ITKALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYKQA 299 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556667777788888888888888777777777776655554
No 264
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=69.84 E-value=48 Score=33.61 Aligned_cols=22 Identities=14% Similarity=-0.150 Sum_probs=15.7
Q ss_pred ccchhHHHHHHHHHHHHHHHHH
Q 012379 343 STRYDKAMTLFLSCLKDFAEFA 364 (465)
Q Consensus 343 ~~kFD~AM~afL~cl~q~~~~~ 364 (465)
...||....+||....+.+-.+
T Consensus 210 ~~~~~Is~~~~lt~~~~~c~~~ 231 (292)
T KOG4005|consen 210 DEEFDISRLEELTESLLACITA 231 (292)
T ss_pred chhhhHHHHHHHHHHHHHHhhh
Confidence 3468888888888777766554
No 265
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=69.73 E-value=2e+02 Score=34.29 Aligned_cols=98 Identities=20% Similarity=0.291 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012379 173 EEERKLEAAIEETEKQNAEVNAELKELELKSKRFKE--LEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 250 (465)
Q Consensus 173 ~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~--~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~LdkL~k 250 (465)
+|...|++.++.+..+..++.+++..+..++..|+. .=...-+.+..++.++.+.-.+-.|+..-...+...|..+++
T Consensus 774 ~E~~~lEe~~d~~~ee~~el~a~v~~~~~qi~~lE~g~~~a~lr~~~~slk~~l~e~ar~Wasl~~~~~vl~e~l~~~ke 853 (984)
T COG4717 774 EELALLEEAIDALDEEVEELHAQVAALSRQIAQLEGGGTVAELRQRRESLKEDLEEKARKWASLRLAVQVLEEALRLFKE 853 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444445555555555555555555555554431 001122334444444444444444555555555666665554
Q ss_pred cc---cCC---CceeeeecCCeeeec
Q 012379 251 TN---VLN---DAFPIWHDGEFGTIN 270 (465)
Q Consensus 251 tN---V~N---d~F~I~hdG~fGTIN 270 (465)
.- |++ ++|.==.||.|.+|+
T Consensus 854 ~rlP~vi~~A~~~F~hlT~G~Yt~Iy 879 (984)
T COG4717 854 RRLPAVIQEASEFFMHLTDGRYTGIY 879 (984)
T ss_pred hhchHHHHHHHHHHhhccCCceeeee
Confidence 32 232 455544789998887
No 266
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.70 E-value=43 Score=35.47 Aligned_cols=17 Identities=12% Similarity=0.255 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 012379 184 ETEKQNAEVNAELKELE 200 (465)
Q Consensus 184 ~LE~e~~~l~~el~~le 200 (465)
+|+.+++.|++++.+++
T Consensus 250 kL~~~~etLEqq~~~L~ 266 (365)
T KOG2391|consen 250 KLVAMKETLEQQLQSLQ 266 (365)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 267
>PF13514 AAA_27: AAA domain
Probab=69.68 E-value=1.2e+02 Score=36.65 Aligned_cols=23 Identities=13% Similarity=0.079 Sum_probs=13.5
Q ss_pred CCCChHHHHHHHHHHHHHHHHHH
Q 012379 280 IPVEWDEINAAWGQACLLLHTMC 302 (465)
Q Consensus 280 ~~V~W~EINAAwGQ~~LLL~tla 302 (465)
..|+..+.-.+----+.|-.-||
T Consensus 1019 ~~~~~~~LS~GT~dQLYLALRLA 1041 (1111)
T PF13514_consen 1019 ERVPVEELSRGTRDQLYLALRLA 1041 (1111)
T ss_pred eEeeHHHhCHHHHHHHHHHHHHH
Confidence 46777777776654444444344
No 268
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=69.55 E-value=39 Score=36.82 Aligned_cols=65 Identities=15% Similarity=0.118 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHhccc-ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 127 SDKLDKEVDDVTRDIEAYE---ACLQRLEGEA-RDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAE 191 (465)
Q Consensus 127 le~L~~qle~~~~E~d~Y~---~fL~~L~~~~-~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~ 191 (465)
+++|+.+-+.+++..|.=. .--..+.+.. .+..+.+.+..-+++|..|-.+|+..|..++++..+
T Consensus 210 mdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~e 278 (552)
T KOG2129|consen 210 MDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQE 278 (552)
T ss_pred HHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666555422 1112222111 111112223334455667777777777766665554
No 269
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=69.51 E-value=90 Score=33.47 Aligned_cols=35 Identities=34% Similarity=0.371 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 175 ERKLEAAIEETEKQNAEVNAELKELELKSKRFKEL 209 (465)
Q Consensus 175 E~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~ 209 (465)
|...++.|+++..|++.|++++...+...+-++++
T Consensus 240 eaqvek~i~EfdiEre~LRAel~ree~r~K~lKeE 274 (561)
T KOG1103|consen 240 EAQVEKLIEEFDIEREFLRAELEREEKRQKMLKEE 274 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666666666666555555443
No 270
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=69.49 E-value=1.2e+02 Score=29.91 Aligned_cols=42 Identities=19% Similarity=0.245 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 170 KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEE 211 (465)
Q Consensus 170 ~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~ 211 (465)
++..|.+.+.+.|..+|+....+-+.-..+..-+..+..-|+
T Consensus 73 ~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE 114 (207)
T PF05010_consen 73 KLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEE 114 (207)
T ss_pred HHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHH
Confidence 344444444444444444444443333333333333333333
No 271
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=69.40 E-value=70 Score=27.16 Aligned_cols=18 Identities=28% Similarity=0.516 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 012379 181 AIEETEKQNAEVNAELKE 198 (465)
Q Consensus 181 eL~~LE~e~~~l~~el~~ 198 (465)
||++|..+...+.++...
T Consensus 26 EieELKekn~~L~~e~~~ 43 (79)
T PRK15422 26 EIEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444333
No 272
>PLN02678 seryl-tRNA synthetase
Probab=69.37 E-value=44 Score=36.51 Aligned_cols=91 Identities=14% Similarity=0.294 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 164 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQA 243 (465)
Q Consensus 164 l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~ 243 (465)
...++.++.++.+++..+++.|..++.++.++|..+....++. +..-.+...+..++..++++++.++.++....
T Consensus 31 ~id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~----~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~- 105 (448)
T PLN02678 31 LVDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDA----TELIAETKELKKEITEKEAEVQEAKAALDAKL- 105 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3567777888889999999999999999999887653221111 11223334444445554555555554444332
Q ss_pred HHHHHhhcccCCCceeeeec
Q 012379 244 HLELLKRTNVLNDAFPIWHD 263 (465)
Q Consensus 244 ~LdkL~ktNV~Nd~F~I~hd 263 (465)
++==|+...-=+++.|
T Consensus 106 ----~~iPNi~~~~VP~G~d 121 (448)
T PLN02678 106 ----KTIGNLVHDSVPVSND 121 (448)
T ss_pred ----HhCCCCCCccCCCCCC
Confidence 2223555554455543
No 273
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=69.34 E-value=1.5e+02 Score=30.91 Aligned_cols=65 Identities=15% Similarity=0.275 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 012379 181 AIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVL 254 (465)
Q Consensus 181 eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~LdkL~ktNV~ 254 (465)
.|+++.+|..+|.+-++-.+.-+.+.+.=-++|+.+.|---..| .+|...++.|++-. |+.-+.+
T Consensus 118 ALKEARkEIkQLkQvieTmrssL~ekDkGiQKYFvDINiQN~KL-------EsLLqsMElAq~g~--~rde~~l 182 (305)
T PF15290_consen 118 ALKEARKEIKQLKQVIETMRSSLAEKDKGIQKYFVDINIQNKKL-------ESLLQSMELAQSGS--LRDEGCL 182 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHhhhhhhHhHH-------HHHHHHHHHHHhcc--ccccCCc
Confidence 35566677777766666666666666666678999998766665 45666677777665 5554443
No 274
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=69.27 E-value=87 Score=34.76 Aligned_cols=39 Identities=28% Similarity=0.383 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 177 KLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQ 215 (465)
Q Consensus 177 ~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~ 215 (465)
.|.++.+.|++...+|++...+|+.+.+++++.++++..
T Consensus 91 ~Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~e~~~ 129 (514)
T TIGR03319 91 TLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEE 129 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444433333
No 275
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=69.23 E-value=78 Score=37.00 Aligned_cols=17 Identities=29% Similarity=0.169 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 012379 286 EINAAWGQACLLLHTMC 302 (465)
Q Consensus 286 EINAAwGQ~~LLL~tla 302 (465)
||-||=|-++=.=-||+
T Consensus 734 EiaaAA~KLAECQeTI~ 750 (769)
T PF05911_consen 734 EIAAAAEKLAECQETIA 750 (769)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 78888887766666665
No 276
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=69.20 E-value=74 Score=36.09 Aligned_cols=123 Identities=25% Similarity=0.329 Sum_probs=62.2
Q ss_pred HHHHhhcC-----CcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhccc---ccCCC-HHHH-HHHHH
Q 012379 103 RAFEIATS-----QTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYE---ACLQRLEGEA---RDVLS-EADF-LKEKL 169 (465)
Q Consensus 103 ~lFdIlSs-----~s~iDhPLC~eC~d~Lle~L~~qle~~~~E~d~Y~---~fL~~L~~~~---~~~~~-ee~l-~~e~~ 169 (465)
.+|+=||+ -.+||-| +|.| .|-++++.+..|.-... ..|+-++.+- .+.++ +.++ .-|++
T Consensus 274 sl~eels~aGs~liGdvdeg-----Adll--GMGrEVeNLilENsqLLetKNALNiVKNDLIakVDeL~~E~~vLrgEle 346 (832)
T KOG2077|consen 274 SLFEELSSAGSGLIGDVDEG-----ADLL--GMGREVENLILENSQLLETKNALNIVKNDLIAKVDELTCEKDVLRGELE 346 (832)
T ss_pred chhhhhhhccccccccccch-----hhhh--cchHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHhhccHHHHHhhHHH
Confidence 46666654 3455554 4555 67777777766654433 2232222110 01122 2222 22443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHH
Q 012379 170 KIEEEERKLEAAIEETEKQNAEVNAELKELE-------------LKSKRFKELEE-RYWQEFNNFQFQLIAHQEERD 232 (465)
Q Consensus 170 ~Le~EE~~L~~eL~~LE~e~~~l~~el~~le-------------~e~~~L~~~E~-~~w~e~n~~q~ql~~~~~e~~ 232 (465)
..+.-..+|+..+.++|.|...+.++..+.. ++.+++..-|- +..-++|.++-.|.++|+...
T Consensus 347 a~kqak~Klee~i~elEEElk~~k~ea~~ar~~~~~~e~ddiPmAqRkRFTRvEMaRVLMeRNqYKErLMELqEavr 423 (832)
T KOG2077|consen 347 AVKQAKLKLEEKIRELEEELKKAKAEAEDARQKAKDDEDDDIPMAQRKRFTRVEMARVLMERNQYKERLMELQEAVR 423 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3344444445555555555555544444432 23334444443 678889999998988876543
No 277
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=68.94 E-value=2e+02 Score=33.78 Aligned_cols=37 Identities=16% Similarity=0.217 Sum_probs=18.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012379 215 QEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRT 251 (465)
Q Consensus 215 ~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~LdkL~kt 251 (465)
++.+.+++++..++.|++--....++...-.|..+|.
T Consensus 148 ken~~Lkye~~~~~keleir~~E~~~~~~~ae~a~kq 184 (769)
T PF05911_consen 148 KENSSLKYELHVLSKELEIRNEEREYSRRAAEAASKQ 184 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4555555555555555554444444444444444443
No 278
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=68.76 E-value=31 Score=32.70 Aligned_cols=34 Identities=29% Similarity=0.446 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 173 EEERKLEAAIEETEKQNAEVNAELKELELKSKRF 206 (465)
Q Consensus 173 ~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L 206 (465)
++.+++.+|++++++|.+..+.+++.++++.+.+
T Consensus 154 ~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l 187 (192)
T PF05529_consen 154 EENKKLSEEIEKLKKELEKKEKEIEALKKQSEGL 187 (192)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555555444444
No 279
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=68.73 E-value=1.2e+02 Score=29.52 Aligned_cols=60 Identities=17% Similarity=0.283 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 012379 177 KLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIE 239 (465)
Q Consensus 177 ~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~ 239 (465)
+|..+|..++...++-+..+..|+.+ ++-....|=++++.-.....+.+.+...+...+.
T Consensus 122 eL~~kL~~~~~~l~~~~~ki~~Lek~---leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~ 181 (194)
T PF15619_consen 122 ELQRKLSQLEQKLQEKEKKIQELEKQ---LELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQ 181 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444332 2222333334444433333343433333333333
No 280
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=68.65 E-value=27 Score=36.18 Aligned_cols=16 Identities=19% Similarity=0.530 Sum_probs=11.5
Q ss_pred ccCCcchHHHHHHHHH
Q 012379 113 QVEQPLCLECMRVLSD 128 (465)
Q Consensus 113 ~iDhPLC~eC~d~Lle 128 (465)
.--|++|..|.|.|..
T Consensus 22 ~C~H~lCEsCvd~iF~ 37 (300)
T KOG3800|consen 22 ECGHRLCESCVDRIFS 37 (300)
T ss_pred cccchHHHHHHHHHHh
Confidence 5678888888887543
No 281
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=68.64 E-value=27 Score=35.20 Aligned_cols=38 Identities=21% Similarity=0.232 Sum_probs=27.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 012379 216 EFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNV 253 (465)
Q Consensus 216 e~n~~q~ql~~~~~e~~sl~~q~~~~~~~LdkL~ktNV 253 (465)
++.-|.....++++|+.....++...+.++++|++-|+
T Consensus 87 QRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~ 124 (248)
T PF08172_consen 87 QRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNV 124 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666666777777777777777788888888776
No 282
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=68.55 E-value=1.5e+02 Score=34.23 Aligned_cols=63 Identities=24% Similarity=0.266 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHhHHHHHHHHHHHHHHH
Q 012379 171 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERY---------------WQEFNNFQFQLIAHQEERDA 233 (465)
Q Consensus 171 Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~---------------w~e~n~~q~ql~~~~~e~~s 233 (465)
|.++...+...|++|.+++++-.+|+.++..+++.+..+.... .+..+.|+.+|.++++|...
T Consensus 101 Lke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~ 178 (660)
T KOG4302|consen 101 LKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKSD 178 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHHH
Confidence 6667777777778888887777777777777777765444333 24455555566666555543
No 283
>PRK07737 fliD flagellar capping protein; Validated
Probab=68.39 E-value=21 Score=39.29 Aligned_cols=48 Identities=15% Similarity=0.413 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 012379 184 ETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAI 234 (465)
Q Consensus 184 ~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl 234 (465)
.|.++...++.++..++.+ ++..|++||+.|+.++.-+...+.+...|
T Consensus 445 ~l~~~i~~l~~~i~~~~~r---l~~~e~ry~~qf~ale~~~s~mnsq~s~L 492 (501)
T PRK07737 445 AIGKDLNQIETQIDRFQDR---LKQIEDRYYKKFSAMEKAIQKANEQSMYL 492 (501)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566666555543 56668899999999988776655444333
No 284
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=68.35 E-value=90 Score=32.34 Aligned_cols=21 Identities=10% Similarity=0.308 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 012379 229 EERDAISSKIEVSQAHLELLK 249 (465)
Q Consensus 229 ~e~~sl~~q~~~~~~~LdkL~ 249 (465)
-....++.|+..+..++++|.
T Consensus 95 ~qv~~lEgQl~s~Kkqie~Le 115 (307)
T PF10481_consen 95 SQVNFLEGQLNSCKKQIEKLE 115 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333445555555555555553
No 285
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=68.28 E-value=1e+02 Score=36.84 Aligned_cols=38 Identities=26% Similarity=0.390 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 171 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKE 208 (465)
Q Consensus 171 Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~ 208 (465)
+.+|.+++..|+.+|+...+.|.+++..+|..+..|++
T Consensus 401 ~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkE 438 (1243)
T KOG0971|consen 401 LQKELEKKNSELEELRRQKERLSRELDQAESTIADLKE 438 (1243)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555566666666666666666655555543
No 286
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=68.19 E-value=1.3e+02 Score=31.31 Aligned_cols=22 Identities=5% Similarity=0.054 Sum_probs=12.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHh
Q 012379 344 TRYDKAMTLFLSCLKDFAEFAN 365 (465)
Q Consensus 344 ~kFD~AM~afL~cl~q~~~~~~ 365 (465)
+||..-=..+++-|+.+..-++
T Consensus 222 kKl~~eke~L~~qv~klk~qLe 243 (302)
T PF09738_consen 222 KKLADEKEELLEQVRKLKLQLE 243 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555566666666665553
No 287
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=68.14 E-value=1.5e+02 Score=33.55 Aligned_cols=118 Identities=14% Similarity=0.172 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 121 ECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 200 (465)
Q Consensus 121 eC~d~Lle~L~~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le 200 (465)
+-+..+-|++=+.-+-+..|.+....-|++.+++.-. .-.++.+|..++++-..+|++.++++-...+.+.+-+++|.
T Consensus 566 ~a~~vfrEqYi~~~dlV~~e~qrH~~~l~~~k~~QlQ--~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~ 643 (741)
T KOG4460|consen 566 RATQVFREQYILKQDLVKEEIQRHVKLLCDQKKKQLQ--DLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLL 643 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3444555555555555555555555555544332210 01223344444555555555555555444444444444442
Q ss_pred H----HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 201 L----KSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLEL 247 (465)
Q Consensus 201 ~----e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ldk 247 (465)
. +...+-.-|.. |+.+++..-++.++|.+-++.+....+|
T Consensus 644 ~~~~~~lp~l~~AErd-------Fk~Elq~~~~~~~~L~~~iET~~~~~~K 687 (741)
T KOG4460|consen 644 HSFHSELPVLSDAERD-------FKKELQLIPDQLRHLGNAIETVTMKKDK 687 (741)
T ss_pred hcccccCCcchhHHHH-------HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 1 22223344443 3444444455556665555555544444
No 288
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=68.05 E-value=1.6e+02 Score=37.74 Aligned_cols=40 Identities=20% Similarity=0.308 Sum_probs=20.7
Q ss_pred CcccCCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 111 QTQVEQP-LCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRL 151 (465)
Q Consensus 111 ~s~iDhP-LC~eC~d~Lle~L~~qle~~~~E~d~Y~~fL~~L 151 (465)
.+.|.|- .|.+-...+ ..+..++++...+++..+.-+..+
T Consensus 45 k~~v~~eq~~~~~ekK~-~~l~q~~~~~~~q~~~~~~e~s~l 85 (1822)
T KOG4674|consen 45 KTEVNHEQQLSELEKKI-LRLEQRLSDLSRQAKLLRNELSDL 85 (1822)
T ss_pred hhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443 244433333 336666777766666665555444
No 289
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=67.99 E-value=78 Score=27.34 Aligned_cols=77 Identities=26% Similarity=0.387 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHhccc--------------ccCCC-HHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 012379 125 VLSDKLDKEVDDVTRDIEAYEAC--LQRLEGEA--------------RDVLS-EADFLKEK-LKIEEEERKLEAAIEETE 186 (465)
Q Consensus 125 ~Lle~L~~qle~~~~E~d~Y~~f--L~~L~~~~--------------~~~~~-ee~l~~e~-~~Le~EE~~L~~eL~~LE 186 (465)
.|-+...++++..-+|++....+ |++|-.+. .+.++ ++.+..-+ ..++++...|...|..++
T Consensus 14 ~l~~~~~~Ef~~I~~Er~v~~kLneLd~Li~eA~~r~~~~~~~~~~~~~~l~P~~~i~a~l~~~~~~~~~~L~~~l~~l~ 93 (109)
T PF03980_consen 14 FLEENCKKEFEEILEERDVVEKLNELDKLIEEAKERKNSGEREKPVWRHSLTPEEDIRAHLAPYKKKEREQLNARLQELE 93 (109)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhccccCCCCCCCCCChHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34555677888888888887754 45543211 01123 33344333 335777888889999999
Q ss_pred HHHHHHHHHHHHHHH
Q 012379 187 KQNAEVNAELKELEL 201 (465)
Q Consensus 187 ~e~~~l~~el~~le~ 201 (465)
++..++.+++.+++.
T Consensus 94 ~eN~~L~~~i~~~r~ 108 (109)
T PF03980_consen 94 EENEALAEEIQEQRK 108 (109)
T ss_pred HHHHHHHHHHHHhhc
Confidence 999988888877654
No 290
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=67.72 E-value=1e+02 Score=31.87 Aligned_cols=43 Identities=23% Similarity=0.184 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeeecCCeeeecc
Q 012379 228 QEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINN 271 (465)
Q Consensus 228 ~~e~~sl~~q~~~~~~~LdkL~ktNV~Nd~F~I~hdG~fGTING 271 (465)
+.+.+.+.+++..++.+|+.++..- =+....=-.||.+..++-
T Consensus 157 ~~~~~~~~~~l~~~~~~l~~~~~~l-~~~~I~AP~dG~V~~~~~ 199 (370)
T PRK11578 157 QAQIGTIDAQIKRNQASLDTAKTNL-DYTRIVAPMAGEVTQITT 199 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hcCEEECCCCcEEEeeec
Confidence 3344455555555555555544321 111233334666666553
No 291
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=67.62 E-value=66 Score=27.88 Aligned_cols=35 Identities=26% Similarity=0.304 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 169 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKS 203 (465)
Q Consensus 169 ~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~ 203 (465)
.-++.....+..+++.++++...+.+++..++...
T Consensus 90 ~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l 124 (129)
T cd00890 90 EFLKKRLETLEKQIEKLEKQLEKLQDQITELQEEL 124 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555555555555555555443
No 292
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=67.58 E-value=1.6e+02 Score=31.14 Aligned_cols=30 Identities=7% Similarity=0.091 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 012379 124 RVLSDKLDKEVDDVTRDIEAYEACLQRLEG 153 (465)
Q Consensus 124 d~Lle~L~~qle~~~~E~d~Y~~fL~~L~~ 153 (465)
....+.|+.|+..+.++.+..+.-|+..+.
T Consensus 170 ~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~ 199 (444)
T TIGR03017 170 QKAALWFVQQIAALREDLARAQSKLSAYQQ 199 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777777766666665544
No 293
>PRK06664 fliD flagellar hook-associated protein FliD; Validated
Probab=67.48 E-value=17 Score=41.38 Aligned_cols=51 Identities=12% Similarity=0.255 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 012379 182 IEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAIS 235 (465)
Q Consensus 182 L~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~ 235 (465)
.+.|+++..+++.++.+++. +|+..|++||+.|..++..+...+.....|.
T Consensus 602 ~~~l~~~i~~l~~~i~~~e~---rl~~~e~rl~~QFtaME~~msqmnsqss~L~ 652 (661)
T PRK06664 602 VKGLDERIADNNKKIEEYEK---KLESKERKLKGKYLTMDQTVKKMKEQSNYLK 652 (661)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555553 4678889999999999887766554443333
No 294
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=67.42 E-value=1.2e+02 Score=33.76 Aligned_cols=32 Identities=16% Similarity=0.431 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHh
Q 012379 121 ECMRVLSDKLDKEVDDVTRDIEA-----YEACLQRLE 152 (465)
Q Consensus 121 eC~d~Lle~L~~qle~~~~E~d~-----Y~~fL~~L~ 152 (465)
|=....+..|.+++++++.|... |..|...+.
T Consensus 10 edl~~~I~~L~~~i~~~k~eV~~~I~~~y~df~~~~~ 46 (593)
T PF06248_consen 10 EDLRKSISRLSRRIEELKEEVHSMINKKYSDFSPSLQ 46 (593)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666666666666665543 666665443
No 295
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=67.21 E-value=1.6e+02 Score=30.37 Aligned_cols=6 Identities=50% Similarity=0.390 Sum_probs=2.5
Q ss_pred CCceEE
Q 012379 56 DESFVV 61 (465)
Q Consensus 56 ~es~v~ 61 (465)
++|.-|
T Consensus 53 ~~s~sf 58 (269)
T PF05278_consen 53 DESQSF 58 (269)
T ss_pred CcCccc
Confidence 344444
No 296
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=66.94 E-value=42 Score=29.36 Aligned_cols=32 Identities=22% Similarity=0.419 Sum_probs=14.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 217 FNNFQFQLIAHQEERDAISSKIEVSQAHLELL 248 (465)
Q Consensus 217 ~n~~q~ql~~~~~e~~sl~~q~~~~~~~LdkL 248 (465)
++.++..+.+..-+.+.+.++++-...+++.|
T Consensus 67 v~~L~l~l~el~G~~~~l~~~l~~v~~~~~lL 98 (106)
T PF10805_consen 67 VHDLQLELAELRGELKELSARLQGVSHQLDLL 98 (106)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444555554444444443
No 297
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=66.93 E-value=1.2e+02 Score=30.85 Aligned_cols=110 Identities=19% Similarity=0.165 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 123 MRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 202 (465)
Q Consensus 123 ~d~Lle~L~~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e 202 (465)
....+-.+|+.+.+.+++...+..-.+.++.+.. .-.+........++.++..+...+..|....+.-..++.+-..+
T Consensus 188 ~~~~ilq~d~~L~~~ek~~~~~~~k~e~~e~e~~--~l~e~~~~~~~~le~~~~~~ee~~~~L~ekme~e~~~~~~e~e~ 265 (297)
T PF02841_consen 188 MENSILQADQQLTEKEKEIEEEQAKAEAAEKEKE--KLEEKQKEQEQMLEQQERSYEEHIKQLKEKMEEEREQLLQEQER 265 (297)
T ss_dssp HHHHHHHH-TTS-HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 012379 203 SKRFKELEERYWQEFNNFQFQLIAHQEERDAIS 235 (465)
Q Consensus 203 ~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~ 235 (465)
.......|..=+- ...|+.+....+.|..+|.
T Consensus 266 ~l~~k~~eq~~~l-~e~~~~~~~~l~~ei~~L~ 297 (297)
T PF02841_consen 266 LLEQKLQEQEELL-KEGFQEEAEKLQKEIQDLQ 297 (297)
T ss_dssp HHHHHHHHHHHHH-HCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcC
No 298
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=66.68 E-value=18 Score=38.47 Aligned_cols=41 Identities=17% Similarity=0.184 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeeecC
Q 012379 224 LIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDG 264 (465)
Q Consensus 224 l~~~~~e~~sl~~q~~~~~~~LdkL~ktNV~Nd~F~I~hdG 264 (465)
+.++++++++++.++..+..-++.=...-++..++.|.+..
T Consensus 275 ~~~~~~q~~~~~k~~~~~~~~~~~~~~~~~la~~l~~~~g~ 315 (406)
T PF02388_consen 275 LKELEEQLASLEKRIEEAEELIAEYGDEIPLAGALFIYYGD 315 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-SEEEEEEEEEEEETT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcceEEEEEEEEECC
Confidence 33444445555555555555455555556788888887765
No 299
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=66.60 E-value=59 Score=26.29 Aligned_cols=52 Identities=23% Similarity=0.380 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 163 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYW 214 (465)
Q Consensus 163 ~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w 214 (465)
++.+.+.+++...+++...+..+|+..+..+.++..+..++.+++.--.=.|
T Consensus 3 ~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW~~ 54 (71)
T PF10779_consen 3 DIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKWIW 54 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666667777777777777777777777766666655444333
No 300
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=66.53 E-value=1.4e+02 Score=29.52 Aligned_cols=71 Identities=18% Similarity=0.285 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012379 180 AAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 250 (465)
Q Consensus 180 ~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~LdkL~k 250 (465)
...+..|..+.++..+++-+....+.|..-++.|-...-.+.-++..+.+.+.....+-+++...+.+|.+
T Consensus 102 eraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLek 172 (205)
T KOG1003|consen 102 ERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEK 172 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcc
Confidence 33344455555566666666666666666666666666666666666666666666566666655555554
No 301
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=66.45 E-value=98 Score=27.71 Aligned_cols=18 Identities=33% Similarity=0.479 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 012379 182 IEETEKQNAEVNAELKEL 199 (465)
Q Consensus 182 L~~LE~e~~~l~~el~~l 199 (465)
+..|+.+.+.+.+.+.+|
T Consensus 46 l~~L~~q~~s~~qr~~eL 63 (107)
T PF09304_consen 46 LQSLQAQNASRNQRIAEL 63 (107)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 302
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=66.44 E-value=1.5e+02 Score=31.80 Aligned_cols=113 Identities=16% Similarity=0.211 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 012379 126 LSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEE----TEKQNAEVNAELKELEL 201 (465)
Q Consensus 126 Lle~L~~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~----LE~e~~~l~~el~~le~ 201 (465)
.+..|..++..+...+.....-+..-.-+.. .-+..+.+-...+..|..+....+.. ++++.+.+.+++..++.
T Consensus 286 ~i~~Lr~~~~~~~~~~~~l~~~~~~~~p~~~--~~~~q~~~~~~~~~~e~~~~~~~~~~~~~~l~~~~~~L~~~~~~l~~ 363 (458)
T COG3206 286 TIQDLRQQYAQVRQQIADLSTELGAKHPQLV--ALEAQLAELRQQIAAELRQILASLPNELALLEQQEAALEKELAQLKG 363 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccChHHH--hHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 202 KSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAH 244 (465)
Q Consensus 202 e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~ 244 (465)
+...+.+.+ ..++.+++++.....-...+..+++.+..+
T Consensus 364 ~~~~~~~~~----~~l~~L~Re~~~~r~~ye~lL~r~qe~~~~ 402 (458)
T COG3206 364 RLSKLPKLQ----VQLRELEREAEAARSLYETLLQRYQELSIQ 402 (458)
T ss_pred HHhhchHhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 303
>PF13514 AAA_27: AAA domain
Probab=66.35 E-value=2.9e+02 Score=33.40 Aligned_cols=27 Identities=19% Similarity=0.420 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 012379 127 SDKLDKEVDDVTRDIEAYEACLQRLEG 153 (465)
Q Consensus 127 le~L~~qle~~~~E~d~Y~~fL~~L~~ 153 (465)
+..+..+++..+++++.|..-+..|-.
T Consensus 745 ~~~~~~ri~~~~~~~~~f~~~~~~L~~ 771 (1111)
T PF13514_consen 745 IRELRRRIEQMEADLAAFEEQVAALAE 771 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888888888877776643
No 304
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=65.96 E-value=88 Score=27.56 Aligned_cols=28 Identities=25% Similarity=0.407 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012379 125 VLSDKLDKEVDDVTRDIEAYEACLQRLE 152 (465)
Q Consensus 125 ~Lle~L~~qle~~~~E~d~Y~~fL~~L~ 152 (465)
..++.+..+++.+...+..|...++.|+
T Consensus 13 ~~i~~l~~~~~~l~~~~~e~~~~~~~l~ 40 (129)
T cd00584 13 QEIEELQQELARLNEAIAEYEQAKETLE 40 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777876665554
No 305
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=65.81 E-value=45 Score=31.59 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 012379 220 FQFQLIAHQEERDAISSKIEVS 241 (465)
Q Consensus 220 ~q~ql~~~~~e~~sl~~q~~~~ 241 (465)
++.++...+.+.+.++.|.+..
T Consensus 166 lk~el~~~~~~~~~LkkQ~~~l 187 (192)
T PF05529_consen 166 LKKELEKKEKEIEALKKQSEGL 187 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444433
No 306
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=65.71 E-value=2.4e+02 Score=31.87 Aligned_cols=56 Identities=21% Similarity=0.260 Sum_probs=29.2
Q ss_pred cchhHHHHHHHHHhhcC-CcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 94 FHSTITVLKRAFEIATS-QTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQ 149 (465)
Q Consensus 94 ls~~i~~l~~lFdIlSs-~s~iDhPLC~eC~d~Lle~L~~qle~~~~E~d~Y~~fL~ 149 (465)
+.+++..|..-+.-.+. -++.|----.+=-..+-+.++.-|+..++|..++..-.+
T Consensus 253 id~~~~~L~~~l~~~~~~l~~Leld~aeeel~~I~e~ie~lYd~lE~EveA~~~V~~ 309 (570)
T COG4477 253 IDSRLERLKEQLVENSELLTQLELDEAEEELGLIQEKIESLYDLLEREVEAKNVVEE 309 (570)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66666655544432221 122222112333344566777777777888877765444
No 307
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=65.46 E-value=21 Score=39.27 Aligned_cols=14 Identities=36% Similarity=0.669 Sum_probs=10.4
Q ss_pred eeeeecCCCceeec
Q 012379 313 IKIIPMGSYPRIMD 326 (465)
Q Consensus 313 ykLvPmGS~SkI~~ 326 (465)
..-+|-|||.+-.-
T Consensus 211 ~~YiPsgSf~~avl 224 (475)
T PRK13729 211 LPYIPSGSFAKAML 224 (475)
T ss_pred CceeCCCCeEEEEE
Confidence 44679999987753
No 308
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=65.45 E-value=1.7e+02 Score=30.00 Aligned_cols=43 Identities=16% Similarity=0.269 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 164 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 206 (465)
Q Consensus 164 l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L 206 (465)
+.....+|.+=+++...++..|+++..++++.|....++..-|
T Consensus 65 l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L 107 (258)
T PF15397_consen 65 LQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFL 107 (258)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445666666677888888888888888888888777666
No 309
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=65.40 E-value=1.2e+02 Score=31.42 Aligned_cols=85 Identities=24% Similarity=0.320 Sum_probs=44.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 012379 159 LSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKE--LEERYWQEFNNFQFQLIAHQEERDAISS 236 (465)
Q Consensus 159 ~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~--~E~~~w~e~n~~q~ql~~~~~e~~sl~~ 236 (465)
++.|..+.=+++-|---+.|+..|++-+....+-+.||.+|+.++.++.+ .|++-.+ =+-|+.|.+...|..+|+.
T Consensus 54 P~PEQYLTPLQQKEV~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHR--VEAQLALKEARkEIkQLkQ 131 (305)
T PF15290_consen 54 PNPEQYLTPLQQKEVCIRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHR--VEAQLALKEARKEIKQLKQ 131 (305)
T ss_pred CCHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 34455444444444555666677777777777777777777777666642 1211111 1233444455555555555
Q ss_pred HHHHHHHHH
Q 012379 237 KIEVSQAHL 245 (465)
Q Consensus 237 q~~~~~~~L 245 (465)
-++...+.|
T Consensus 132 vieTmrssL 140 (305)
T PF15290_consen 132 VIETMRSSL 140 (305)
T ss_pred HHHHHHhhh
Confidence 555554443
No 310
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=65.16 E-value=1.1e+02 Score=35.00 Aligned_cols=111 Identities=16% Similarity=0.179 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 123 MRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 202 (465)
Q Consensus 123 ~d~Lle~L~~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e 202 (465)
++.+.+.|.+++..++... ....+.. + .....|.....+..+|+++++......+.+|..+...
T Consensus 3 ad~~~~~L~~eL~~le~~n--i~~l~~s-~-------------~~v~~l~~~ld~a~~e~d~le~~l~~y~~~L~~~~~d 66 (701)
T PF09763_consen 3 ADAFEERLSKELSALEAAN--IHSLLES-E-------------KQVNSLMEYLDEALAECDELESWLSLYDVELNSVRDD 66 (701)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHh-h-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888774332 2222221 0 0111222333333444444444444444444444433
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 012379 203 SKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNV 253 (465)
Q Consensus 203 ~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~LdkL~ktNV 253 (465)
...++.+.... +--+ .+...+.++++.|..++.....+++.|+..++
T Consensus 67 i~~IE~qn~~L-qvq~---~N~k~L~~eL~~Ll~~l~i~~~~l~~L~~~~l 113 (701)
T PF09763_consen 67 IEYIESQNNGL-QVQS---ANQKLLLNELENLLDTLSIPEEHLEALRNASL 113 (701)
T ss_pred HHHHHhhcCch-hhHH---HHHHHHHHHHHHHHHhcCCCHHHHHHHhcCCC
Confidence 33333222111 1111 22333466777788888888888888887555
No 311
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=65.12 E-value=1.5e+02 Score=33.92 Aligned_cols=49 Identities=18% Similarity=0.305 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 012379 175 ERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQ 223 (465)
Q Consensus 175 E~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~q 223 (465)
.++|.++++.|..+..+++++|+..+.+....+..=++.|.+..+.+..
T Consensus 81 r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k 129 (632)
T PF14817_consen 81 RRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHK 129 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555666666655555555555666666555543
No 312
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=65.11 E-value=24 Score=30.28 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Q 012379 229 EERDAISSKIEVSQAHLELLKRTN 252 (465)
Q Consensus 229 ~e~~sl~~q~~~~~~~LdkL~ktN 252 (465)
+|..++..++..-..+|..|++-|
T Consensus 43 ~E~~~l~~~l~~~E~eL~~LrkEN 66 (85)
T PF15188_consen 43 KELNELKEKLENNEKELKLLRKEN 66 (85)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhh
Confidence 455556666666666666666654
No 313
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=64.85 E-value=89 Score=26.85 Aligned_cols=60 Identities=30% Similarity=0.365 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 136 DVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELK 197 (465)
Q Consensus 136 ~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~ 197 (465)
.+.++++.|...+.-++++.. .+...+ ...+..+-.++..+..+|..+++++..+-..+.
T Consensus 9 ~L~~~~~~~~~L~~ll~~e~~-~l~~~d-~~~l~~~~~~k~~l~~~l~~le~~r~~~~~~~~ 68 (143)
T PF05130_consen 9 LLEEQIELLQELLELLEEERE-ALISGD-IDELEELVEEKQELLEELRELEKQRQQLLAKLG 68 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHTTH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345566677777776665431 111112 124555667777788888888888877665444
No 314
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=64.83 E-value=1.4e+02 Score=28.79 Aligned_cols=41 Identities=15% Similarity=0.147 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 201 LKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVS 241 (465)
Q Consensus 201 ~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~ 241 (465)
.+...++..=.++=.....+..++..+...+..+..+....
T Consensus 98 ~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l 138 (221)
T PF04012_consen 98 EQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREEL 138 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444444444444444444444443333
No 315
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=64.75 E-value=1.8e+02 Score=32.38 Aligned_cols=10 Identities=20% Similarity=0.743 Sum_probs=4.1
Q ss_pred eeeeCCccce
Q 012379 383 YKIENDKVEN 392 (465)
Q Consensus 383 Y~I~kdkI~g 392 (465)
|.|+++..+|
T Consensus 513 ~~l~k~~~~~ 522 (563)
T TIGR00634 513 FKVEKEGLDG 522 (563)
T ss_pred EEEEEccCCC
Confidence 3344444443
No 316
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=64.71 E-value=3e+02 Score=33.51 Aligned_cols=12 Identities=17% Similarity=0.534 Sum_probs=6.4
Q ss_pred CchhhHHHHHHH
Q 012379 402 QENWTKALKYTL 413 (465)
Q Consensus 402 ~e~WTkAlK~lL 413 (465)
+...-|||-|.-
T Consensus 590 e~e~eka~~~a~ 601 (1141)
T KOG0018|consen 590 EPEYEKAVQFAC 601 (1141)
T ss_pred CHHHHHHHHHHh
Confidence 345566655543
No 317
>PRK00106 hypothetical protein; Provisional
Probab=64.69 E-value=2.4e+02 Score=31.66 Aligned_cols=12 Identities=8% Similarity=0.291 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 012379 178 LEAAIEETEKQN 189 (465)
Q Consensus 178 L~~eL~~LE~e~ 189 (465)
|.++.+.|++..
T Consensus 106 L~qREE~LekRe 117 (535)
T PRK00106 106 LTERATSLDRKD 117 (535)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 318
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=64.69 E-value=2.1e+02 Score=33.89 Aligned_cols=11 Identities=36% Similarity=0.760 Sum_probs=7.0
Q ss_pred HHHHHHHHHHh
Q 012379 142 EAYEACLQRLE 152 (465)
Q Consensus 142 d~Y~~fL~~L~ 152 (465)
+.|..++++|.
T Consensus 903 ~~~e~~~~~l~ 913 (1259)
T KOG0163|consen 903 KNYEKLVKRLD 913 (1259)
T ss_pred HHHHHHHHHhh
Confidence 35667777665
No 319
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=64.68 E-value=25 Score=36.33 Aligned_cols=40 Identities=30% Similarity=0.372 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 172 EEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEE 211 (465)
Q Consensus 172 e~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~ 211 (465)
+.|-+.|.-|++.||+..++|..+..+++.|+..|++.=.
T Consensus 247 Rae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~ 286 (294)
T KOG4571|consen 247 RAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLIL 286 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667888888888888888888888888877765533
No 320
>PF07061 Swi5: Swi5; InterPro: IPR010760 This entry represents Swi5 and is involved in meiotic DNA repair synthesis and meiotic joint molecule formation []. It is known to interact with Swi2, Rhp51 and Swi6 [].
Probab=64.64 E-value=25 Score=29.78 Aligned_cols=10 Identities=20% Similarity=0.637 Sum_probs=6.8
Q ss_pred HHHHHHhHHH
Q 012379 212 RYWQEFNNFQ 221 (465)
Q Consensus 212 ~~w~e~n~~q 221 (465)
+..++||+++
T Consensus 43 ~lLheYNeiK 52 (83)
T PF07061_consen 43 KLLHEYNEIK 52 (83)
T ss_pred HHHHHHhHHH
Confidence 4567777775
No 321
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=64.64 E-value=54 Score=37.58 Aligned_cols=15 Identities=13% Similarity=-0.097 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHH
Q 012379 121 ECMRVLSDKLDKEVD 135 (465)
Q Consensus 121 eC~d~Lle~L~~qle 135 (465)
+|-+.++..|+++.-
T Consensus 35 ~e~d~~l~~le~e~~ 49 (660)
T KOG4302|consen 35 TERDKKLLRLEQECL 49 (660)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444443
No 322
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=64.64 E-value=24 Score=33.96 Aligned_cols=15 Identities=7% Similarity=0.182 Sum_probs=10.0
Q ss_pred CcccCCcchHHHHHH
Q 012379 111 QTQVEQPLCLECMRV 125 (465)
Q Consensus 111 ~s~iDhPLC~eC~d~ 125 (465)
..==|||+|.||.|-
T Consensus 96 DGICDy~~CCDGSDE 110 (176)
T PF12999_consen 96 DGICDYDICCDGSDE 110 (176)
T ss_pred CCcCcccccCCCCCC
Confidence 334578888887664
No 323
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=64.39 E-value=26 Score=35.60 Aligned_cols=54 Identities=17% Similarity=0.213 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012379 165 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFN 218 (465)
Q Consensus 165 ~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n 218 (465)
.+..++-+..+.+....+..||+|.+.+..++..|+.++..+.....++|+..+
T Consensus 207 ~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~~~~~~~ 260 (269)
T KOG3119|consen 207 RKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRLFLQLPKPGG 260 (269)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 344444455557777888899999999999999999999999888888887544
No 324
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=64.31 E-value=1.8e+02 Score=30.00 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 178 LEAAIEETEKQNAEVNAELKELEL 201 (465)
Q Consensus 178 L~~eL~~LE~e~~~l~~el~~le~ 201 (465)
|+.+|.++...++++.+-|++||.
T Consensus 96 Leddlsqt~aikeql~kyiReLEQ 119 (333)
T KOG1853|consen 96 LEDDLSQTHAIKEQLRKYIRELEQ 119 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444443
No 325
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.31 E-value=85 Score=26.25 Aligned_cols=27 Identities=19% Similarity=0.390 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 181 AIEETEKQNAEVNAELKELELKSKRFK 207 (465)
Q Consensus 181 eL~~LE~e~~~l~~el~~le~e~~~L~ 207 (465)
|+++|..+...+.+|..+++...++|+
T Consensus 26 EieELKEknn~l~~e~q~~q~~reaL~ 52 (79)
T COG3074 26 EIEELKEKNNSLSQEVQNAQHQREALE 52 (79)
T ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHH
Confidence 333343344444444333333333333
No 326
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=64.20 E-value=1.3e+02 Score=29.68 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 012379 224 LIAHQEERDAISSKIEVSQAHL 245 (465)
Q Consensus 224 l~~~~~e~~sl~~q~~~~~~~L 245 (465)
+..+.++++.++.|.+....+|
T Consensus 162 l~~v~~Dl~~ie~QV~~Le~~L 183 (195)
T PF12761_consen 162 LKSVREDLDTIEEQVDGLESHL 183 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555444
No 327
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=63.82 E-value=1.4e+02 Score=29.51 Aligned_cols=63 Identities=16% Similarity=0.076 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeeecCCeeeeccccCCCCCCCCCChHHHHHHHHHHHHH
Q 012379 226 AHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLL 297 (465)
Q Consensus 226 ~~~~e~~sl~~q~~~~~~~LdkL~ktNV~Nd~F~I~hdG~fGTINGlRLGrlp~~~V~W~EINAAwGQ~~LL 297 (465)
+.++++..+..+++....++..|.+.--| .+..|....+-.. -|..+--|..|-.||....-.
T Consensus 166 ~ie~~L~~v~~eIe~~~~~~~~l~~~v~~-sti~i~l~~~~~~--------~~~~~~~~~~~~~al~~~~~~ 228 (262)
T PF14257_consen 166 EIERELSRVRSEIEQLEGQLKYLDDRVDY-STITISLYEPESI--------KPESPSFGSRFRDALKNGWNA 228 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhce-EEEEEEEEecCCC--------CCCCCCcchHHHHHHHHHHHH
Confidence 33444444444445554444444433222 3455555544110 112344566666555554433
No 328
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=63.07 E-value=1.8e+02 Score=31.87 Aligned_cols=15 Identities=20% Similarity=0.350 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHhhcC
Q 012379 292 GQACLLLHTMCQYFR 306 (465)
Q Consensus 292 GQ~~LLL~tla~~l~ 306 (465)
|..+=|..+|+..+|
T Consensus 206 ~~k~~~~~tLaGs~g 220 (459)
T KOG0288|consen 206 GEKSELISTLAGSLG 220 (459)
T ss_pred cchhhhhhhhhccCC
Confidence 344555566665533
No 329
>PRK08724 fliD flagellar capping protein; Validated
Probab=63.02 E-value=36 Score=39.05 Aligned_cols=49 Identities=22% Similarity=0.243 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 012379 184 ETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAIS 235 (465)
Q Consensus 184 ~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~ 235 (465)
.|.++...++.++..++. +++..|++||+.|+.++..+...+.+...|.
T Consensus 621 sL~~~i~~l~dqi~~Le~---Rle~~E~Ry~~QFtAMD~~msqMnsQ~s~L~ 669 (673)
T PRK08724 621 SLREQNYRLNDDQVALDR---RMESLEKRTHAKFAAMQDATGKMQGQLGGMM 669 (673)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555554 3567788999999999887766554444443
No 330
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=62.81 E-value=49 Score=32.83 Aligned_cols=51 Identities=10% Similarity=0.137 Sum_probs=29.1
Q ss_pred HHHHHHHHhhcCCcccCCcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 99 TVLKRAFEIATSQTQVEQPL--CLECMRVLSDKLDKEVDDVTRDIEAYEACLQR 150 (465)
Q Consensus 99 ~~l~~lFdIlSs~s~iDhPL--C~eC~d~Lle~L~~qle~~~~E~d~Y~~fL~~ 150 (465)
..+....+-|.+-..|++-- =+|=++...+ ++.+++..+.+++.|...|++
T Consensus 105 ~~~~~~l~~l~~~g~v~~~~~~~~DvT~~y~D-~~arl~~l~~~~~rl~~ll~k 157 (262)
T PF14257_consen 105 DKFDSFLDELSELGKVTSRNISSEDVTEQYVD-LEARLKNLEAEEERLLELLEK 157 (262)
T ss_pred HHHHHHHHHHhccCceeeeeccccchHHHHHH-HHHHHHHHHHHHHHHHHHHHh
Confidence 44445555555444454432 3455555554 666777777777777777663
No 331
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=62.79 E-value=88 Score=25.90 Aligned_cols=85 Identities=16% Similarity=0.325 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 127 SDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEAD---FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKS 203 (465)
Q Consensus 127 le~L~~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~---l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~ 203 (465)
++....+++.+...+..|..-+.... . ..+..+ +..-+..|+.....+..++..++.+.+.....+.+...+.
T Consensus 14 ~~~~~~~l~~L~~~~~~~~~~~~~~~-~---~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~ 89 (123)
T PF02050_consen 14 LQEAEEQLEQLQQERQEYQEQLSESQ-Q---GVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRER 89 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT------S---GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc-C---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555543333221 1 122222 2334556777778888888888888888888888887777
Q ss_pred HHHHHHHHHHHH
Q 012379 204 KRFKELEERYWQ 215 (465)
Q Consensus 204 ~~L~~~E~~~w~ 215 (465)
+.++.+.++--.
T Consensus 90 k~~e~L~e~~~~ 101 (123)
T PF02050_consen 90 KKLEKLKERRRE 101 (123)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777766553333
No 332
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=62.75 E-value=1.4e+02 Score=28.23 Aligned_cols=55 Identities=25% Similarity=0.424 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 012379 169 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQ 223 (465)
Q Consensus 169 ~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~q 223 (465)
+.++.|.+.|...+..|+.+...+...+..+......+++.|.+.-++++.+.-.
T Consensus 85 d~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~er 139 (158)
T PF09744_consen 85 DQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLHER 139 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHH
Confidence 3456666667777777777777776666666556666776666665666665543
No 333
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=62.57 E-value=1.1e+02 Score=33.91 Aligned_cols=17 Identities=24% Similarity=0.429 Sum_probs=12.2
Q ss_pred CccccCCCCCCCceEEE
Q 012379 46 SEASQSGKAMDESFVVI 62 (465)
Q Consensus 46 ~~~~~~~~~~~es~v~l 62 (465)
+-+..+++..++-||.+
T Consensus 180 Gyt~~p~~~~~~g~vtl 196 (508)
T KOG3091|consen 180 GYTRNPSRTDDEGFVTL 196 (508)
T ss_pred CccCCCCccCCCCeeee
Confidence 55667777777788885
No 334
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=62.44 E-value=69 Score=34.51 Aligned_cols=35 Identities=26% Similarity=0.510 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 166 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 200 (465)
Q Consensus 166 ~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le 200 (465)
.++.++.++.+++..+++.|..++.++.+++..+.
T Consensus 28 d~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~ 62 (425)
T PRK05431 28 DELLELDEERRELQTELEELQAERNALSKEIGQAK 62 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566778888888888888888888888887643
No 335
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=62.39 E-value=3.2e+02 Score=32.20 Aligned_cols=38 Identities=18% Similarity=0.240 Sum_probs=17.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012379 212 RYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 249 (465)
Q Consensus 212 ~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~LdkL~ 249 (465)
.|=+++..++..+..++.++.....++..++.+..+|.
T Consensus 469 ~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~ 506 (775)
T PF10174_consen 469 TYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLA 506 (775)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHh
Confidence 34444444444444444444444444444444444443
No 336
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=62.11 E-value=1.2e+02 Score=27.19 Aligned_cols=20 Identities=15% Similarity=0.164 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 012379 173 EEERKLEAAIEETEKQNAEV 192 (465)
Q Consensus 173 ~EE~~L~~eL~~LE~e~~~l 192 (465)
.+-....+.+.+|+.+..++
T Consensus 51 ~q~~s~~qr~~eLqaki~ea 70 (107)
T PF09304_consen 51 AQNASRNQRIAELQAKIDEA 70 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 337
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.04 E-value=1.3e+02 Score=35.52 Aligned_cols=55 Identities=22% Similarity=0.238 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 012379 171 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLI 225 (465)
Q Consensus 171 Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~ 225 (465)
++...+++..+++.+.+...++..|.++++++...+..+-.+.-++++.++.|+.
T Consensus 662 yK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 662 YKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4445555555666666666666666666666666665555556666666666654
No 338
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=62.03 E-value=75 Score=34.19 Aligned_cols=35 Identities=23% Similarity=0.469 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 165 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKEL 199 (465)
Q Consensus 165 ~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~l 199 (465)
..++..+.++.+++..+++.|..++..+.++|..+
T Consensus 29 vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~ 63 (418)
T TIGR00414 29 LEKLIALDDERKKLLSEIEELQAKRNELSKQIGKA 63 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777888888888888888888888888764
No 339
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=62.02 E-value=1.1e+02 Score=28.28 Aligned_cols=75 Identities=27% Similarity=0.374 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccc--CCC--HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 128 DKLDKEVDDVTRDIEAYEACLQRLEGEARD--VLS--EAD------FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELK 197 (465)
Q Consensus 128 e~L~~qle~~~~E~d~Y~~fL~~L~~~~~~--~~~--ee~------l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~ 197 (465)
..++.++..+..+++........+.--..+ .+. --+ ..+-...||+-.+.+.++|+.||.+.+.+.+++.
T Consensus 33 ~~lk~dik~~k~~~enledA~~EieL~Dedd~~Ip~~vGdvF~~~~~~~~~~~LEe~ke~l~k~i~~les~~e~I~~~m~ 112 (131)
T KOG1760|consen 33 DDLKADIKEAKTEIENLEDASNEIELLDEDDEDIPFKVGDVFIHVKLDKLQDQLEEKKETLEKEIEELESELESISARMD 112 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhcCccccccceehhhhheeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446777777777777776666655421111 000 000 1223355788888888888888888888888777
Q ss_pred HHHHH
Q 012379 198 ELELK 202 (465)
Q Consensus 198 ~le~e 202 (465)
+|+.-
T Consensus 113 ~LK~~ 117 (131)
T KOG1760|consen 113 ELKKV 117 (131)
T ss_pred HHHHH
Confidence 77653
No 340
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=61.88 E-value=61 Score=28.41 Aligned_cols=89 Identities=19% Similarity=0.138 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHH
Q 012379 161 EADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQE-FNNFQFQLIAHQEERDAISSKIE 239 (465)
Q Consensus 161 ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e-~n~~q~ql~~~~~e~~sl~~q~~ 239 (465)
..++...++-.|+|-.-+.+.|.++|.+...+..||.+++.+...++. .-|-. -..---.-...+.++..+..++.
T Consensus 3 ~aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g~~d~---~~~~~~g~~~~~~~~~l~~eLk~a~~qi~ 79 (96)
T PF11365_consen 3 SAELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKYGDLDS---LAKLSEGGSPSGREAELQEELKLAREQIN 79 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc---cccCCCCCCCccccHHHHHHHHHHHHHHH
Confidence 356666666677777778889999999999999999988876654442 01100 00000001234566677777777
Q ss_pred HHHHHHHHHhhcc
Q 012379 240 VSQAHLELLKRTN 252 (465)
Q Consensus 240 ~~~~~LdkL~ktN 252 (465)
.....+-+|.--|
T Consensus 80 ~Ls~kv~eLq~EN 92 (96)
T PF11365_consen 80 ELSGKVMELQYEN 92 (96)
T ss_pred HHhhHHHHHhhcc
Confidence 7777777776554
No 341
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=61.53 E-value=1.2e+02 Score=27.19 Aligned_cols=69 Identities=22% Similarity=0.367 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 012379 169 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEV 240 (465)
Q Consensus 169 ~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~ 240 (465)
..++++-..+..++..+..+.......+...+ ...+.++..|=++.+.++..+.++..+..-|..|++.
T Consensus 62 ~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e---~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 62 QQLREELQELQQEINELKAEAESAKAELEESE---ASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344444444444444444333333332222 1234455556666666666666666666666666653
No 342
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=61.28 E-value=3.8e+02 Score=32.84 Aligned_cols=39 Identities=13% Similarity=0.129 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcee
Q 012379 221 QFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFP 259 (465)
Q Consensus 221 q~ql~~~~~e~~sl~~q~~~~~~~LdkL~ktNV~Nd~F~ 259 (465)
..+.....+..+.+.......+.|++.|+-+.++...+.
T Consensus 285 ~~~~~~~~~~l~~~~q~~~~i~eQi~~l~~S~~Lg~~L~ 323 (1109)
T PRK10929 285 ASQQRQAASQTLQVRQALNTLREQSQWLGVSNALGEALR 323 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 333333344444444445555667777777777765554
No 343
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=61.12 E-value=91 Score=26.85 Aligned_cols=80 Identities=23% Similarity=0.397 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccc-------------------cCCC--------------HHHHHHHHHHHHH
Q 012379 127 SDKLDKEVDDVTRDIEAYEACLQRLEGEAR-------------------DVLS--------------EADFLKEKLKIEE 173 (465)
Q Consensus 127 le~L~~qle~~~~E~d~Y~~fL~~L~~~~~-------------------~~~~--------------ee~l~~e~~~Le~ 173 (465)
++.++.+++.+...++.|....+.|+.-.. .... +-++.+...-++.
T Consensus 5 l~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~v~g~i~~~~~vlV~lG~~~~vE~s~~eA~~~l~~ 84 (120)
T PF02996_consen 5 LENLQQQIEQLEEQIEEYEEAKETLEELKKEKKEHEILVPLGSGVFVPGKIPDTDKVLVSLGAGYYVEMSLEEAIEFLKK 84 (120)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TT-EEEEEECTTEEEEEE-SSTTEEEEEEETTEEEEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeecCCCCeEEEEEeCCCCEEEEEeeCCeEEEecHHHHHHHHHH
Confidence 567888999999889999877666542110 0000 0112334444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 174 EERKLEAAIEETEKQNAEVNAELKELELKSKRF 206 (465)
Q Consensus 174 EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L 206 (465)
..+.+.+.++.++++...+.+++..++....++
T Consensus 85 r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 117 (120)
T PF02996_consen 85 RIKELEEQLEKLEKELAELQAQIEQLEQTLQQL 117 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666666666666666666655554443
No 344
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=61.10 E-value=1.3e+02 Score=27.44 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 185 TEKQNAEVNAELKELELKSKRFKEL 209 (465)
Q Consensus 185 LE~e~~~l~~el~~le~e~~~L~~~ 209 (465)
++++.+++.+--..+++....+...
T Consensus 57 a~~~L~~~~~~~~~i~e~~~kl~~~ 81 (126)
T PF09403_consen 57 AEAELAELKELYAEIEEKIEKLKQD 81 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHh
Confidence 3333333333333333333444333
No 345
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=61.09 E-value=2.9e+02 Score=31.63 Aligned_cols=30 Identities=13% Similarity=0.314 Sum_probs=18.7
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHh
Q 012379 123 MRVLSDKL---DKEVDDVTRDIEAYEACLQRLE 152 (465)
Q Consensus 123 ~d~Lle~L---~~qle~~~~E~d~Y~~fL~~L~ 152 (465)
..+++..| +..+..+++|+..-..-+...+
T Consensus 237 v~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N 269 (629)
T KOG0963|consen 237 VSLIMTELEDAQQRIVFLEREVEQLREQLAKAN 269 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33444444 4567777888887777776554
No 346
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=60.82 E-value=1.9e+02 Score=32.17 Aligned_cols=19 Identities=16% Similarity=0.184 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 012379 124 RVLSDKLDKEVDDVTRDIE 142 (465)
Q Consensus 124 d~Lle~L~~qle~~~~E~d 142 (465)
.-|.++++-|.+++...+.
T Consensus 337 ~dL~~R~K~Q~q~~~~~r~ 355 (508)
T KOG3091|consen 337 EDLRQRLKVQDQEVKQHRI 355 (508)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4466666666555543333
No 347
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=60.78 E-value=1.2e+02 Score=30.23 Aligned_cols=33 Identities=18% Similarity=0.275 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 171 IEEEERKLEAAIEETEKQNAEVNAELKELELKS 203 (465)
Q Consensus 171 Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~ 203 (465)
.++|..++..+++.+|.++.+|+..+.+++.+.
T Consensus 183 ae~ek~~~~~~~k~le~~k~~Le~~ia~~k~K~ 215 (259)
T KOG4001|consen 183 AENEKTRATTEWKVLEDKKKELELKIAQLKKKL 215 (259)
T ss_pred HhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 466666777777888877777777777766543
No 348
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=60.58 E-value=79 Score=33.19 Aligned_cols=19 Identities=16% Similarity=0.415 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 012379 127 SDKLDKEVDDVTRDIEAYE 145 (465)
Q Consensus 127 le~L~~qle~~~~E~d~Y~ 145 (465)
++.++.+-.++.+.+..|+
T Consensus 2 Vdd~QN~N~EL~kQiEIcq 20 (351)
T PF07058_consen 2 VDDVQNQNQELMKQIEICQ 20 (351)
T ss_pred chhhhhhcHHHHHHHHHHH
Confidence 3445555555555555555
No 349
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=60.57 E-value=1.4e+02 Score=33.04 Aligned_cols=103 Identities=12% Similarity=0.051 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 165 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAH 244 (465)
Q Consensus 165 ~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~ 244 (465)
.+|.+++.-|..=-.++++.+..+.-.|+.+|.++|++...++. ..+-|+..+-++..+..+........
T Consensus 308 ~~E~ee~rve~~~s~ed~~~~q~q~~~Lrs~~~d~EAq~r~l~s----------~~~~q~~~~h~~ka~~~~~~~~l~~~ 377 (554)
T KOG4677|consen 308 RKEFEETRVELPFSAEDSAHIQDQYTLLRSQIIDIEAQDRHLES----------AGQTQIFRKHPRKASILNMPLVLTLF 377 (554)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH----------HhHHHHHHhhhHhhhhhhchHHHHHH
Confidence 44555554444444455666666666666666666665554432 34555666667777777777777777
Q ss_pred HHHHhhcccCCCceeeeecC------------CeeeeccccCCCC
Q 012379 245 LELLKRTNVLNDAFPIWHDG------------EFGTINNFRLGRL 277 (465)
Q Consensus 245 LdkL~ktNV~Nd~F~I~hdG------------~fGTINGlRLGrl 277 (465)
++.++..|=|-.+|-=.... -=.+||-||+--.
T Consensus 378 ~ec~~~e~e~~~~~~~r~~~~~qski~dk~~el~kl~~~l~~r~~ 422 (554)
T KOG4677|consen 378 YECFYHETEAEGTFSSRVNLKKQSKIPDKQYELTKLAARLKLRAW 422 (554)
T ss_pred HHHHHHHHHHhhhhhhhccchhhccCcchHHHHHHHHHHHHHHhh
Confidence 77777776666555432221 1246777777554
No 350
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=60.45 E-value=1.7e+02 Score=28.48 Aligned_cols=51 Identities=12% Similarity=0.181 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 194 AELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAH 244 (465)
Q Consensus 194 ~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~ 244 (465)
..+..++.+...+...-.++=..+..++.++.+....++.|.++...++.+
T Consensus 99 ~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~ 149 (219)
T TIGR02977 99 ELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSR 149 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444445555556666666666666666666555544
No 351
>PRK10869 recombination and repair protein; Provisional
Probab=60.39 E-value=2.3e+02 Score=31.72 Aligned_cols=11 Identities=0% Similarity=0.132 Sum_probs=5.2
Q ss_pred ceeeeCCccce
Q 012379 382 PYKIENDKVEN 392 (465)
Q Consensus 382 PY~I~kdkI~g 392 (465)
.|.|.+...++
T Consensus 502 ~~~v~k~~~~~ 512 (553)
T PRK10869 502 HFFVSKETDGG 512 (553)
T ss_pred EEEEeccccCC
Confidence 35555544443
No 352
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.26 E-value=71 Score=37.51 Aligned_cols=73 Identities=14% Similarity=0.262 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012379 177 KLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 249 (465)
Q Consensus 177 ~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~LdkL~ 249 (465)
...+.++++......+...|+++..+++.+.+.+++.-.+...++-++..+..+..+++.|+....+||...+
T Consensus 647 ~~~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~ 719 (970)
T KOG0946|consen 647 LAEKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIIS 719 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3455666777777777777888888888888777777777777777777777777778888777777776433
No 353
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=60.08 E-value=24 Score=38.87 Aligned_cols=7 Identities=14% Similarity=0.515 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 012379 232 DAISSKI 238 (465)
Q Consensus 232 ~sl~~q~ 238 (465)
..|+.|+
T Consensus 114 ~~Lk~Ql 120 (475)
T PRK13729 114 AALAEQV 120 (475)
T ss_pred HHHHHHH
Confidence 3333443
No 354
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=59.98 E-value=30 Score=30.37 Aligned_cols=31 Identities=13% Similarity=0.316 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 170 KIEEEERKLEAAIEETEKQNAEVNAELKELE 200 (465)
Q Consensus 170 ~Le~EE~~L~~eL~~LE~e~~~l~~el~~le 200 (465)
+++++.+.+.+++.+++.+.++|.+|+..|+
T Consensus 31 ~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 31 RVNDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555555555555555555555555444
No 355
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=59.84 E-value=74 Score=26.97 Aligned_cols=42 Identities=14% Similarity=0.326 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 175 ERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEF 217 (465)
Q Consensus 175 E~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~ 217 (465)
.++|.+++.+|+.....|-..+...+.|-..|+.+. +|.++|
T Consensus 18 k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN-~~Lq~Y 59 (80)
T PF10224_consen 18 KEELIQEILELQDSLEALSDRVEEVKEENEKLESEN-EYLQQY 59 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 456777888888888888888888887777776543 355444
No 356
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=59.25 E-value=4e+02 Score=33.20 Aligned_cols=27 Identities=37% Similarity=0.380 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 162 ADFLKEKLKIEEEERKLEAAIEETEKQ 188 (465)
Q Consensus 162 e~l~~e~~~Le~EE~~L~~eL~~LE~e 188 (465)
+++.+|..++..+..++.++++.+.++
T Consensus 822 ~E~~~Ek~~~~~~~~~~rke~E~~~k~ 848 (1294)
T KOG0962|consen 822 DELRKEKSKKQESLDKLRKEIECLQKE 848 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555444444444444444433
No 357
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=59.18 E-value=92 Score=26.61 Aligned_cols=16 Identities=25% Similarity=0.563 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 012379 130 LDKEVDDVTRDIEAYE 145 (465)
Q Consensus 130 L~~qle~~~~E~d~Y~ 145 (465)
++.+...+..+.+.-.
T Consensus 34 ld~~~r~l~~~~e~lr 49 (108)
T PF02403_consen 34 LDQERRELQQELEELR 49 (108)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444333333333
No 358
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=59.04 E-value=2.1e+02 Score=28.94 Aligned_cols=40 Identities=30% Similarity=0.276 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeeecCCeeeeccccCCC
Q 012379 228 QEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGR 276 (465)
Q Consensus 228 ~~e~~sl~~q~~~~~~~LdkL~ktNV~Nd~F~I~hdG~fGTINGlRLGr 276 (465)
+.+..+++++++.++.+|++ +- -.=-+||.+..++ ...|.
T Consensus 185 ~~~~~~~~~~l~~a~~~l~~---~~-----i~AP~dG~V~~~~-~~~G~ 224 (327)
T TIGR02971 185 QAEVKSALEAVQQAEALLEL---TY-----VKAPIDGRVLKIH-AREGE 224 (327)
T ss_pred HHHHHHHHHHHHHHHHHHhc---CE-----EECCCCeEEEEEe-cCCCC
Confidence 34445555666666555442 21 2223477776665 45664
No 359
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=59.00 E-value=2.2e+02 Score=29.38 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 012379 225 IAHQEERDAISSKIEVSQAHLE 246 (465)
Q Consensus 225 ~~~~~e~~sl~~q~~~~~~~Ld 246 (465)
..+..++..-+.+++.++++|.
T Consensus 180 ~rlK~ele~tk~Klee~Qnels 201 (330)
T KOG2991|consen 180 LRLKGELEQTKDKLEEAQNELS 201 (330)
T ss_pred HHHHHHHHHHHHHHHHHHhhhh
Confidence 3445555666677777776664
No 360
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=58.89 E-value=2.9e+02 Score=30.61 Aligned_cols=11 Identities=18% Similarity=0.166 Sum_probs=5.5
Q ss_pred HHHHHHHHHhh
Q 012379 98 ITVLKRAFEIA 108 (465)
Q Consensus 98 i~~l~~lFdIl 108 (465)
+..+..+|+-+
T Consensus 225 ~~el~~~~~~l 235 (582)
T PF09731_consen 225 VQELVSIFNDL 235 (582)
T ss_pred HHHHHHhccch
Confidence 34455555444
No 361
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=58.86 E-value=1.1e+02 Score=25.53 Aligned_cols=77 Identities=14% Similarity=0.265 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012379 172 EEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEER--YWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 249 (465)
Q Consensus 172 e~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~--~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~LdkL~ 249 (465)
+-.-+++...+.++...-..+...|..+..+..++.+.+.- .+..-- +...+..+..+...+..++...+..+++|+
T Consensus 13 ~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~-y~~KL~~ikkrm~~l~~~l~~lk~R~~~L~ 91 (92)
T PF14712_consen 13 EPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDP-YVKKLVNIKKRMSNLHERLQKLKKRADKLQ 91 (92)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33344455556666655556666555555555555442221 121222 444455555555666666666666666664
No 362
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.78 E-value=2.2e+02 Score=29.24 Aligned_cols=27 Identities=7% Similarity=0.303 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 012379 127 SDKLDKEVDDVTRDIEAYEACLQRLEG 153 (465)
Q Consensus 127 le~L~~qle~~~~E~d~Y~~fL~~L~~ 153 (465)
+..=+.++..++++....+.-++.|..
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~ 59 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDN 59 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666666666665543
No 363
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=58.66 E-value=2.3e+02 Score=29.50 Aligned_cols=76 Identities=14% Similarity=0.256 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 167 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQ 242 (465)
Q Consensus 167 e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~ 242 (465)
+.+.+..+-..+-.++.+|-.+-.+.-.+|..+-.+...+...=..|..++-.+.....++.++.+.+.+.|.-..
T Consensus 166 ei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~ 241 (294)
T COG1340 166 EIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELE 241 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444444444444443444444444344444444444444444444444444443333
No 364
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=58.50 E-value=1.7e+02 Score=31.08 Aligned_cols=63 Identities=13% Similarity=0.157 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 012379 173 EEERKLEAAIEETEKQNAEVNAELKELELKSKRFK-ELEERYWQEFNNFQFQLIAHQEERDAIS 235 (465)
Q Consensus 173 ~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~-~~E~~~w~e~n~~q~ql~~~~~e~~sl~ 235 (465)
.+...|.++-+.|+.+..++.++++++-.+..+++ ++=.+|-.-+|.-+..+.++++.+..+.
T Consensus 144 ~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L~~KF~~vLNeKK~KIR~lq~~L~~~~ 207 (342)
T PF06632_consen 144 AENEHLQKENERLESEANKLLKQLEKFVNAKEEHEEDLYAKFVLVLNEKKAKIRELQRLLASAK 207 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Confidence 33333444444444444444444444433333332 2333566667777777766665555444
No 365
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=58.30 E-value=2.5e+02 Score=29.71 Aligned_cols=48 Identities=23% Similarity=0.371 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCCceeeeecCCeeeeccccCCCC
Q 012379 229 EERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRL 277 (465)
Q Consensus 229 ~e~~sl~~q~~~~~~~LdkL~ktNV~Nd~F~I~hdG~fGTINGlRLGrl 277 (465)
+++..+++++..+..+++.++..--++..-.=-+||.+..++ .+.|..
T Consensus 227 ~~~~~~~~~l~~~~~~l~~~~~~l~~~~~i~AP~dG~V~~~~-~~~G~~ 274 (421)
T TIGR03794 227 KELETVEARIKEARYEIEELENKLNLNTRIVSQHSGRVIELN-YTPGQL 274 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEcCCCeEEEEee-CCCCCE
Confidence 445566777777777777776554333344445677777766 466653
No 366
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=58.11 E-value=3.6e+02 Score=31.43 Aligned_cols=74 Identities=16% Similarity=0.080 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012379 178 LEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRT 251 (465)
Q Consensus 178 L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~LdkL~kt 251 (465)
+.+++..+..-.+.......++......|...=+.+-..+..++.+..+...+++-..-+..+++..+.+|++.
T Consensus 543 l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~k 616 (698)
T KOG0978|consen 543 LIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRK 616 (698)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344433333333344444444444444444445566666677777777777766666667777777777654
No 367
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=57.86 E-value=41 Score=31.10 Aligned_cols=32 Identities=25% Similarity=0.482 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 171 IEEEERKLEAAIEETEKQNAEVNAELKELELK 202 (465)
Q Consensus 171 Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e 202 (465)
||.+...|.++++.|..|.+++..|+..++..
T Consensus 79 LE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k 110 (135)
T KOG4196|consen 79 LEKEKAELQQQVEKLKEENSRLRRELDAYKSK 110 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444433
No 368
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=57.78 E-value=4.6e+02 Score=32.62 Aligned_cols=16 Identities=13% Similarity=0.179 Sum_probs=10.1
Q ss_pred cchhHHHHHHHHHhhc
Q 012379 94 FHSTITVLKRAFEIAT 109 (465)
Q Consensus 94 ls~~i~~l~~lFdIlS 109 (465)
+..++..|.++=.||+
T Consensus 1520 I~e~v~sL~nVd~IL~ 1535 (1758)
T KOG0994|consen 1520 IQERVASLPNVDAILS 1535 (1758)
T ss_pred HHHHHHhcccHHHHHH
Confidence 5556666666666664
No 369
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=57.73 E-value=3e+02 Score=30.46 Aligned_cols=14 Identities=14% Similarity=0.280 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 012379 125 VLSDKLDKEVDDVT 138 (465)
Q Consensus 125 ~Lle~L~~qle~~~ 138 (465)
.++.....++..+.
T Consensus 251 ~~i~~a~~~i~~L~ 264 (582)
T PF09731_consen 251 SLIAHAKERIDALQ 264 (582)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333444444333
No 370
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=57.73 E-value=57 Score=37.38 Aligned_cols=59 Identities=15% Similarity=0.264 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 178 LEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQ 242 (465)
Q Consensus 178 L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~ 242 (465)
|+.+|+.|++|+++ +++......++..+..-++.+.++.++..++||+.-+.+....+.
T Consensus 2 LRdkL~~Lq~ek~~------E~~~l~~~~~~lk~~~~~el~~Lk~~vqkLEDEKKFL~nE~r~~s 60 (654)
T PF09798_consen 2 LRDKLELLQQEKQK------ERQALKSSVEELKESHEEELNKLKSEVQKLEDEKKFLNNELRSLS 60 (654)
T ss_pred hHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666665542 222222333444445567778888888888888888877655554
No 371
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=57.47 E-value=3.1e+02 Score=34.11 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=12.9
Q ss_pred HHHhhcccCCCceeeeecCCee
Q 012379 246 ELLKRTNVLNDAFPIWHDGEFG 267 (465)
Q Consensus 246 dkL~ktNV~Nd~F~I~hdG~fG 267 (465)
..|+..+-.|..|..-++.-+|
T Consensus 948 s~l~~~~~~~~~~~~~~~~~~~ 969 (1294)
T KOG0962|consen 948 SLLHQIYKLNECFEQYGFDDLR 969 (1294)
T ss_pred HHHHHHHHhHHHHHHHhhhhhc
Confidence 4444555556666666666665
No 372
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=57.15 E-value=2.5e+02 Score=32.94 Aligned_cols=38 Identities=13% Similarity=0.400 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 170 KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 207 (465)
Q Consensus 170 ~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~ 207 (465)
.|++|++.+.+.++++..+++.+...+++|..+.+.|.
T Consensus 220 ~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 220 RLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 35666666666666666666666666666666555554
No 373
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=56.91 E-value=3.5e+02 Score=31.12 Aligned_cols=22 Identities=23% Similarity=0.105 Sum_probs=16.0
Q ss_pred CchhhHHHHHHHhhHHHHHHHH
Q 012379 402 QENWTKALKYTLCNLKWALFWF 423 (465)
Q Consensus 402 ~e~WTkAlK~lLtNlKwlLaw~ 423 (465)
-++|...+|-+..+++=+|-++
T Consensus 576 ~e~llP~Lk~~~~~~~q~Le~~ 597 (632)
T PF14817_consen 576 LERLLPRLKRLVQKAQQALEYC 597 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888777777766554
No 374
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=56.77 E-value=83 Score=35.00 Aligned_cols=31 Identities=23% Similarity=0.278 Sum_probs=18.0
Q ss_pred chhhHHHHHHHh--hHHHHHHHHhhCCccCCcc
Q 012379 403 ENWTKALKYTLC--NLKWALFWFVGNTNFQPVS 433 (465)
Q Consensus 403 e~WTkAlK~lLt--NlKwlLaw~~~~t~~~~~~ 433 (465)
-.|-++||-||. .-=|-..-++--++.+|+.
T Consensus 521 ~~q~rvmkaLlelp~~yWsqfl~v~~~~~~~~~ 553 (604)
T KOG3564|consen 521 KTQPRVMKALLELPLEYWSQFLGVEPVNTDPLH 553 (604)
T ss_pred hhhHHHHHHHHhCCHHHHHHhhccccccCCCcc
Confidence 468899986653 3445544445555555543
No 375
>PF11684 DUF3280: Protein of unknown function (DUF2380); InterPro: IPR021698 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=56.71 E-value=8.8 Score=35.49 Aligned_cols=28 Identities=25% Similarity=0.436 Sum_probs=24.0
Q ss_pred CccceeeEEecCCCCchhhHHHHHHHhh
Q 012379 388 DKVENYSITQSFNKQENWTKALKYTLCN 415 (465)
Q Consensus 388 dkI~g~SIkl~~n~~e~WTkAlK~lLtN 415 (465)
.-|-++++-+-.|+++.|.++++||+.|
T Consensus 110 ~~v~~~~~diRgntD~sW~Rg~~~l~~n 137 (140)
T PF11684_consen 110 KVVRGRSVDIRGNTDESWRRGARYLVKN 137 (140)
T ss_pred CEEeeeeeeEecCcHHHHHHHHHHHHHh
Confidence 3456788888789999999999999887
No 376
>KOG3758 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.53 E-value=3.5e+02 Score=31.11 Aligned_cols=92 Identities=14% Similarity=0.245 Sum_probs=47.0
Q ss_pred HHHHHhhcCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcccccCCCHHHHHHHHHHHHHHHHHHHH
Q 012379 102 KRAFEIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACL-QRLEGEARDVLSEADFLKEKLKIEEEERKLEA 180 (465)
Q Consensus 102 ~~lFdIlSs~s~iDhPLC~eC~d~Lle~L~~qle~~~~E~d~Y~~fL-~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~ 180 (465)
.++--||+.++..|. +|...|-. +-.-+++...+- ++-| ..++... .-..+++.+|.+++...-.+..+
T Consensus 16 ~K~~kiL~~~~~~dk----d~~~aL~~-ls~~~~eN~~~~---RRnLr~~iE~~~--l~iN~e~l~ef~~i~~~l~~v~e 85 (655)
T KOG3758|consen 16 NKLSKILNNRTYSDK----DALAALRA-LSTFFEENSLRA---RRNLRSDIESRL--LKINEEFLKEFKEIKRRLDRVSE 85 (655)
T ss_pred HHHHHHHHhcccCcH----HHHHHHHH-HHHHHHhhhHHH---HhhhhhHHHHHH--HHhhHHHHHHHHHHHHHHHHHHH
Confidence 567778999999986 55554433 333333332222 1111 1111110 00124556666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 012379 181 AIEETEKQNAEVNAELKELELKS 203 (465)
Q Consensus 181 eL~~LE~e~~~l~~el~~le~e~ 203 (465)
.+..+..-++.+..++..-....
T Consensus 86 ~v~km~~t~~~l~s~ls~~k~~t 108 (655)
T KOG3758|consen 86 DVEKMANTCDKLKSNLSTSKATT 108 (655)
T ss_pred HHHHHHHHHHHHHHHHhhccchH
Confidence 66666666666655555444333
No 377
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=56.52 E-value=3.5e+02 Score=32.33 Aligned_cols=64 Identities=20% Similarity=0.299 Sum_probs=39.9
Q ss_pred eeecCCeeeeccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhcCCCCCCc-------------eeeeecCCCceeec
Q 012379 260 IWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYFRPKFPYR-------------IKIIPMGSYPRIMD 326 (465)
Q Consensus 260 I~hdG~fGTINGlRLGrlp~~~V~W~EINAAwGQ~~LLL~tla~~l~~~f~~~-------------ykLvPmGS~SkI~~ 326 (465)
|-|=.+=||.-.+|.-+- +..-.-.|+--.|--+.++...+.+.+.. |+ . ++-+-.|.|+.|-.
T Consensus 804 i~~lE~g~~~a~lr~~~~-slk~~l~e~ar~Wasl~~~~~vl~e~l~~-~k-e~rlP~vi~~A~~~F~hlT~G~Yt~Iy~ 880 (984)
T COG4717 804 IAQLEGGGTVAELRQRRE-SLKEDLEEKARKWASLRLAVQVLEEALRL-FK-ERRLPAVIQEASEFFMHLTDGRYTGIYT 880 (984)
T ss_pred HHHHhcCChHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-hhhchHHHHHHHHHHhhccCCceeeeec
Confidence 334334466777776542 23456678888888888888888876631 11 1 33445688888853
No 378
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=56.47 E-value=7.9 Score=44.35 Aligned_cols=24 Identities=29% Similarity=0.142 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHhhcccCCCceee
Q 012379 237 KIEVSQAHLELLKRTNVLNDAFPI 260 (465)
Q Consensus 237 q~~~~~~~LdkL~ktNV~Nd~F~I 260 (465)
+++..+..|.+..+.|+|-..+.|
T Consensus 154 ~~~~f~~~l~r~~~~N~fi~~~~I 177 (759)
T PF01496_consen 154 KIESFERILWRATRGNIFIRFSEI 177 (759)
T ss_dssp HHHHHHHHHHHHHTT-----S---
T ss_pred hHHHHHHHHHHhccCCeEEEEEee
Confidence 455566778888888888765544
No 379
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=56.22 E-value=42 Score=25.59 Aligned_cols=32 Identities=28% Similarity=0.512 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 171 IEEEERKLEAAIEETEKQNAEVNAELKELELK 202 (465)
Q Consensus 171 Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e 202 (465)
-...+..|..++..|+.+...|..++..|+.|
T Consensus 23 kk~~~~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 23 KKQREEELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34555666777777777777777777666543
No 380
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=55.97 E-value=1.1e+02 Score=28.06 Aligned_cols=21 Identities=14% Similarity=0.115 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 012379 227 HQEERDAISSKIEVSQAHLEL 247 (465)
Q Consensus 227 ~~~e~~sl~~q~~~~~~~Ldk 247 (465)
+.++-..|..+|.-..+.|++
T Consensus 87 yk~eYk~llk~y~~~~~~L~k 107 (126)
T PF09403_consen 87 YKDEYKELLKKYKDLLNKLDK 107 (126)
T ss_dssp THHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666666666654
No 381
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=55.82 E-value=70 Score=36.07 Aligned_cols=23 Identities=17% Similarity=0.265 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 012379 185 TEKQNAEVNAELKELELKSKRFK 207 (465)
Q Consensus 185 LE~e~~~l~~el~~le~e~~~L~ 207 (465)
++++.+.++++|.+++.+..+++
T Consensus 561 ~~~~~~~~e~~i~~le~~~~~l~ 583 (638)
T PRK10636 561 LRKEIARLEKEMEKLNAQLAQAE 583 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555554444
No 382
>PF13166 AAA_13: AAA domain
Probab=55.67 E-value=3.5e+02 Score=30.52 Aligned_cols=25 Identities=16% Similarity=0.108 Sum_probs=16.5
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHhh
Q 012379 275 GRLPKIPVEWDEINAAWGQACLLLHTMCQY 304 (465)
Q Consensus 275 Grlp~~~V~W~EINAAwGQ~~LLL~tla~~ 304 (465)
|..|..-.+.-|=|+ +-|+++|+.-
T Consensus 494 ~~~~~~~LSEGEk~~-----iAf~yFla~l 518 (712)
T PF13166_consen 494 GSKPAKILSEGEKRA-----IAFAYFLAEL 518 (712)
T ss_pred CCcccCccCHHHHHH-----HHHHHHHHHH
Confidence 556667788888753 5566666643
No 383
>PF07303 Occludin_ELL: Occludin homology domain; InterPro: IPR010844 This represents a conserved region approximately 100 residues long within eukaryotic occludin proteins and the RNA polymerase II elongation factor ELL. Occludin is an integral membrane protein that localises to tight junctions [], while ELL is an elongation factor that can increase the catalytic rate of RNA polymerase II transcription by suppressing transient pausing by polymerase at multiple sites along the DNA []. This shared domain is thought to mediate protein interactions [].; PDB: 1WPA_A 3G7C_A 1XAW_A.
Probab=55.44 E-value=74 Score=27.80 Aligned_cols=47 Identities=28% Similarity=0.486 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 012379 174 EERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQ 221 (465)
Q Consensus 174 EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q 221 (465)
|=.+|-+++..+-+...+|+.+|..+..-..+-+..+ +.+.+|+.++
T Consensus 23 EYk~L~~~v~~v~~~f~~L~~~l~~l~~~s~ey~~i~-~I~~eY~k~K 69 (101)
T PF07303_consen 23 EYKELHAEVDAVSRRFQELDSELKRLPPGSQEYKRIA-QILQEYNKKK 69 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-TTSHHHHHHH----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHH-HHHHHHHHHH
Confidence 3344556666666666666666666655555556666 7888888885
No 384
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=55.05 E-value=77 Score=35.76 Aligned_cols=18 Identities=11% Similarity=0.235 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 012379 135 DDVTRDIEAYEACLQRLE 152 (465)
Q Consensus 135 e~~~~E~d~Y~~fL~~L~ 152 (465)
....+.++.+...++.|+
T Consensus 46 ~~~~~~~~~~~~~l~~L~ 63 (646)
T PRK05771 46 RKLRSLLTKLSEALDKLR 63 (646)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 333444444555555553
No 385
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=54.79 E-value=2e+02 Score=29.99 Aligned_cols=18 Identities=22% Similarity=0.361 Sum_probs=10.9
Q ss_pred CchhhHHHHHHHhhHHHH
Q 012379 402 QENWTKALKYTLCNLKWA 419 (465)
Q Consensus 402 ~e~WTkAlK~lLtNlKwl 419 (465)
..+|+...+-+=..++.+
T Consensus 293 ~~RW~~~~~~l~~~~~~l 310 (344)
T PF12777_consen 293 KERWSEQIEELEEQLKNL 310 (344)
T ss_dssp HHCCHCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhccc
Confidence 468887666555555544
No 386
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=54.51 E-value=4e+02 Score=30.96 Aligned_cols=117 Identities=15% Similarity=0.185 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 127 SDKLDKEVDDVTRDIEAYEACLQRLEGEARD-VLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKR 205 (465)
Q Consensus 127 le~L~~qle~~~~E~d~Y~~fL~~L~~~~~~-~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~ 205 (465)
.+.+..++..+.++++.|....+.+.+...+ ..+.++...++..-+..-.++..+++.|..+..+..+.+.-.+++..-
T Consensus 421 ~krl~~~l~~~tk~reqlk~lV~~~~k~~~e~e~s~~~~~~~i~~~k~~~e~le~~~kdL~s~L~~~~q~l~~qr~e~~~ 500 (716)
T KOG4593|consen 421 EKRLAEELPQVTKEREQLKGLVQKVDKHSLEMEASMEELYREITGQKKRLEKLEHELKDLQSQLSSREQSLLFQREESEL 500 (716)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 206 FKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQA 243 (465)
Q Consensus 206 L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~ 243 (465)
+.+-=.+|-++.+.++.+--.+..+...-..+=++..+
T Consensus 501 ~~e~i~~~~ke~~~Le~En~rLr~~~e~~~l~gd~~~~ 538 (716)
T KOG4593|consen 501 LREKIEQYLKELELLEEENDRLRAQLERRLLQGDYEEN 538 (716)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
No 387
>cd07611 BAR_Amphiphysin_I_II The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysin I and II. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of the T-tubule network. The N-BAR domain of amphiphysin forms a curved dimer with a posit
Probab=54.50 E-value=2.3e+02 Score=28.11 Aligned_cols=108 Identities=17% Similarity=0.244 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhccc----ccCCCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Q 012379 121 ECMRVLSDKLDKEV-DDVTRDIEAYEACLQRLEGEA----RDVLSEADFLKEKLKIEE-------EERKLEAAIEETEKQ 188 (465)
Q Consensus 121 eC~d~Lle~L~~ql-e~~~~E~d~Y~~fL~~L~~~~----~~~~~ee~l~~e~~~Le~-------EE~~L~~eL~~LE~e 188 (465)
+..+.+++.|+..+ +++..=++.|......+++-. ..-++-+.....+.+|.. -..+.+++++.++..
T Consensus 75 ~~~d~~~~dl~~~lv~~vl~P~~~~~s~f~~I~~~I~KR~hKllDYD~~r~~~~kL~~k~~kDe~KL~kAe~el~~Ak~~ 154 (211)
T cd07611 75 EKCDLLWEDFHQKLVDGALLTLDTYLGQFPDIKNRIAKRSRKLVDYDSARHHLEALQTSKRKDEGRIAKAEEEFQKAQKV 154 (211)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHH
Confidence 44455666665555 445555555666555544321 111222333334444422 112334455555555
Q ss_pred HHHHHHHHHH----H--------HHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 012379 189 NAEVNAELKE----L--------ELKSKRFKELEERYWQEFNNFQFQLIAHQ 228 (465)
Q Consensus 189 ~~~l~~el~~----l--------e~e~~~L~~~E~~~w~e~n~~q~ql~~~~ 228 (465)
.+.++.+|.+ | .--.+.+-..+.+||.+...+-.+|.+..
T Consensus 155 ye~lN~~Lk~ELP~L~~~Ri~f~~psFeal~~~q~~f~~E~~k~~~~l~~~~ 206 (211)
T cd07611 155 FEEFNVDLQEELPSLWSRRVGFYVNTFKNVSSLEAKFHKEISVLCHKLYEVM 206 (211)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555543332 1 01122345666677777777666665543
No 388
>PLN02320 seryl-tRNA synthetase
Probab=54.30 E-value=98 Score=34.45 Aligned_cols=33 Identities=18% Similarity=0.243 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 166 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKE 198 (465)
Q Consensus 166 ~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~ 198 (465)
.++..+.++.+++..++++|..++.++.+++..
T Consensus 93 d~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~ 125 (502)
T PLN02320 93 ELVLELYENMLALQKEVERLRAERNAVANKMKG 125 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556666666777777777777777776654
No 389
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=54.30 E-value=2.1e+02 Score=27.56 Aligned_cols=55 Identities=31% Similarity=0.391 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHH
Q 012379 169 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF-KELEERYWQEFNNFQFQ 223 (465)
Q Consensus 169 ~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L-~~~E~~~w~e~n~~q~q 223 (465)
..++.+-..|..++++|+.+..++......++....+. ..+++.+=.++..++.+
T Consensus 123 ~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~ 178 (189)
T PF10211_consen 123 QELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQ 178 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666666665555443 33333444444444443
No 390
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=54.27 E-value=86 Score=30.96 Aligned_cols=18 Identities=22% Similarity=0.364 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 012379 232 DAISSKIEVSQAHLELLK 249 (465)
Q Consensus 232 ~sl~~q~~~~~~~LdkL~ 249 (465)
+.+.+++..++.+|+.++
T Consensus 112 ~~~~~~l~~~~~~l~~~~ 129 (322)
T TIGR01730 112 EAAQADLEAAKASLASAQ 129 (322)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444444
No 391
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=53.95 E-value=1.4e+02 Score=25.42 Aligned_cols=6 Identities=17% Similarity=0.124 Sum_probs=2.3
Q ss_pred HHHHHH
Q 012379 231 RDAISS 236 (465)
Q Consensus 231 ~~sl~~ 236 (465)
+.+|..
T Consensus 69 Lr~LLG 74 (79)
T PRK15422 69 LQALLG 74 (79)
T ss_pred HHHHHH
Confidence 334433
No 392
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=53.58 E-value=3e+02 Score=29.23 Aligned_cols=29 Identities=28% Similarity=0.444 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012379 223 QLIAHQEERDAISSKIEVSQAHLELLKRT 251 (465)
Q Consensus 223 ql~~~~~e~~sl~~q~~~~~~~LdkL~kt 251 (465)
+...+.+-...|..++..+...+..|.++
T Consensus 325 Ev~~l~~~i~~L~~~L~~a~~~l~~L~~~ 353 (384)
T PF03148_consen 325 EVKELRESIEALQEKLDEAEASLQKLERT 353 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555566666677766666666543
No 393
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=53.51 E-value=1e+02 Score=31.26 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 178 LEAAIEETEKQNAEVNAELKELELK 202 (465)
Q Consensus 178 L~~eL~~LE~e~~~l~~el~~le~e 202 (465)
+..|..+|+++.+.+..+|..|..|
T Consensus 219 ~~ae~seLq~r~~~l~~~L~~L~~e 243 (289)
T COG4985 219 YVAEKSELQKRLAQLQTELDALRAE 243 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3444555555555555555555444
No 394
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=53.40 E-value=2.6e+02 Score=28.49 Aligned_cols=40 Identities=25% Similarity=0.366 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 165 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSK 204 (465)
Q Consensus 165 ~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~ 204 (465)
..|..+++...++|.++|+-+..+..+|+.-+..+|.+.+
T Consensus 119 y~e~~~vk~~qkrLdq~L~~I~sqQ~ELE~~L~~lE~k~~ 158 (254)
T KOG2196|consen 119 YNEVVKVKLDQKRLDQELEFILSQQQELEDLLDPLETKLE 158 (254)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555566666666555555555555555554443
No 395
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=53.38 E-value=1.3e+02 Score=34.36 Aligned_cols=42 Identities=21% Similarity=0.307 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 166 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 207 (465)
Q Consensus 166 ~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~ 207 (465)
.|+.+||....+|..+|+++-...+++.++|...+.|+.+|+
T Consensus 93 ~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk 134 (907)
T KOG2264|consen 93 LELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALK 134 (907)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 345555555555666666666555555555555555555554
No 396
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=53.37 E-value=2.3e+02 Score=27.69 Aligned_cols=90 Identities=16% Similarity=0.226 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhHHHHHHHHHH--------HHHHHHH
Q 012379 166 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELEL--KSKRFKELEERYWQEFNNFQFQLIAHQ--------EERDAIS 235 (465)
Q Consensus 166 ~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~--e~~~L~~~E~~~w~e~n~~q~ql~~~~--------~e~~sl~ 235 (465)
+++..|..+..+|.+.+..|.+++.-+++||+.|.. -+.++++.-.+.=+++..+...+..+. ++...+.
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpedk~~v~ 158 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPEDKEQVY 158 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhhcccCCCc
Q 012379 236 SKIEVSQAHLELLKRTNVLNDA 257 (465)
Q Consensus 236 ~q~~~~~~~LdkL~ktNV~Nd~ 257 (465)
..|+-.-++..+-++ +|++.
T Consensus 159 ~~y~~~~~~wrk~kr--mf~ei 178 (201)
T KOG4603|consen 159 REYQKYCKEWRKRKR--MFREI 178 (201)
T ss_pred HHHHHHHHHHHHHHH--HHHHH
No 397
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=53.25 E-value=1.4e+02 Score=31.56 Aligned_cols=11 Identities=45% Similarity=0.383 Sum_probs=6.4
Q ss_pred ccccccccccc
Q 012379 15 STRMDNSFVVL 25 (465)
Q Consensus 15 ~~~~d~s~~~l 25 (465)
|+-||+=|++-
T Consensus 56 sTLmdtLFNt~ 66 (406)
T KOG3859|consen 56 STLMDTLFNTK 66 (406)
T ss_pred HHHHHHHhccc
Confidence 55566666554
No 398
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=53.15 E-value=2.8e+02 Score=30.07 Aligned_cols=19 Identities=21% Similarity=0.076 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 012379 287 INAAWGQACLLLHTMCQYF 305 (465)
Q Consensus 287 INAAwGQ~~LLL~tla~~l 305 (465)
||--+--+..||..++.-+
T Consensus 344 inllL~l~~vlLv~vSt~~ 362 (395)
T PF10267_consen 344 INLLLTLLTVLLVFVSTVA 362 (395)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3444444444555555444
No 399
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=53.07 E-value=1.1e+02 Score=29.60 Aligned_cols=20 Identities=20% Similarity=0.514 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 012379 133 EVDDVTRDIEAYEACLQRLE 152 (465)
Q Consensus 133 qle~~~~E~d~Y~~fL~~L~ 152 (465)
+++...+=++.|+.-+..|+
T Consensus 106 Elq~mr~~ln~FR~qm~dlE 125 (179)
T PF14723_consen 106 ELQQMRRSLNSFREQMMDLE 125 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444445555666666554
No 400
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=53.04 E-value=63 Score=25.66 Aligned_cols=36 Identities=25% Similarity=0.489 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 170 KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKR 205 (465)
Q Consensus 170 ~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~ 205 (465)
+||.+-.++...+..+++|.+++..++.+++.-.++
T Consensus 4 elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ 39 (55)
T PF05377_consen 4 ELENELPRIESSINTVKKENEEISESVEKIEENVKD 39 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555566666666666666666665554433
No 401
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=52.81 E-value=1.9e+02 Score=26.54 Aligned_cols=56 Identities=11% Similarity=0.213 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012379 194 AELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 249 (465)
Q Consensus 194 ~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~LdkL~ 249 (465)
+.|..+..++++..+.-+..=.+.+..+.++..+.++.+++.....-....++.|+
T Consensus 68 qRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 68 QRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444455566666666666666767666666666666554
No 402
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=52.78 E-value=1.1e+02 Score=30.13 Aligned_cols=33 Identities=18% Similarity=0.320 Sum_probs=24.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012379 217 FNNFQFQLIAHQEERDAISSKIEVSQAHLELLK 249 (465)
Q Consensus 217 ~n~~q~ql~~~~~e~~sl~~q~~~~~~~LdkL~ 249 (465)
+....-++...+++-+.|+.-+..=+..|+.|+
T Consensus 162 l~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 162 LKSVREDLDTIEEQVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455666777777777778777777777787776
No 403
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=52.69 E-value=2.8e+02 Score=29.03 Aligned_cols=28 Identities=21% Similarity=0.430 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 123 MRVLSDKLDKEVDDVTRDIEAYEACLQR 150 (465)
Q Consensus 123 ~d~Lle~L~~qle~~~~E~d~Y~~fL~~ 150 (465)
....|+.++++++.++.+.+.|...+..
T Consensus 86 q~~~i~~l~~~i~~l~~~i~~y~~~~~~ 113 (301)
T PF06120_consen 86 QKRAIEDLQKKIDSLKDQIKNYQQQLAE 113 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456677777777777777777765543
No 404
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=52.60 E-value=2.6e+02 Score=29.46 Aligned_cols=32 Identities=19% Similarity=0.347 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHh
Q 012379 121 ECMRVLSDKLDKEVDDVTRDIEAYE--ACLQRLE 152 (465)
Q Consensus 121 eC~d~Lle~L~~qle~~~~E~d~Y~--~fL~~L~ 152 (465)
.|...--+.|+.+|+.+.++.+.+- .|+..|+
T Consensus 56 ~C~kvHd~~lk~~Ye~~~k~~~~~~E~d~~~~l~ 89 (319)
T KOG0796|consen 56 PCPKVHDEALKADYERASKERDYGYEWDALEILE 89 (319)
T ss_pred cccchhhHHHHHHHhhchHhhhhhhhHHHHHHHH
Confidence 5778888999999999999888743 3444443
No 405
>PRK10698 phage shock protein PspA; Provisional
Probab=52.40 E-value=2.4e+02 Score=27.77 Aligned_cols=20 Identities=10% Similarity=0.308 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 012379 122 CMRVLSDKLDKEVDDVTRDI 141 (465)
Q Consensus 122 C~d~Lle~L~~qle~~~~E~ 141 (465)
=.+.++..|...+..+....
T Consensus 28 ~l~q~i~em~~~l~~~r~al 47 (222)
T PRK10698 28 LVRLMIQEMEDTLVEVRSTS 47 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555553333
No 406
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=52.39 E-value=3.2e+02 Score=29.22 Aligned_cols=13 Identities=38% Similarity=0.411 Sum_probs=6.6
Q ss_pred chhHHHHHHHHHh
Q 012379 95 HSTITVLKRAFEI 107 (465)
Q Consensus 95 s~~i~~l~~lFdI 107 (465)
-+.|..+.=.|.|
T Consensus 46 f~~iss~gwff~i 58 (401)
T PF06785_consen 46 FSIISSLGWFFAI 58 (401)
T ss_pred hHHHHHhHHHHHh
Confidence 3445555555555
No 407
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=52.15 E-value=4.4 Score=35.85 Aligned_cols=41 Identities=22% Similarity=0.411 Sum_probs=0.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 170 KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELE 210 (465)
Q Consensus 170 ~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E 210 (465)
+|+.+.-++.+++..||.+...+..++.+|..+..+|+.++
T Consensus 3 ~Ld~~k~~laK~~~~LE~~l~~l~~el~~L~~~l~eLe~~~ 43 (118)
T PF08286_consen 3 ELDNEKFRLAKELSDLESELESLQSELEELKEELEELEEQE 43 (118)
T ss_dssp ----------------------------------------H
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455555566666666666666666666666655555443
No 408
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=51.87 E-value=95 Score=35.03 Aligned_cols=27 Identities=33% Similarity=0.368 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 177 KLEAAIEETEKQNAEVNAELKELELKS 203 (465)
Q Consensus 177 ~L~~eL~~LE~e~~~l~~el~~le~e~ 203 (465)
++.++++.+|++.+++++++.+++.+.
T Consensus 560 ~~~~~~~~~e~~i~~le~~~~~l~~~l 586 (638)
T PRK10636 560 PLRKEIARLEKEMEKLNAQLAQAEEKL 586 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344456666666666766666666654
No 409
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=51.76 E-value=2.8e+02 Score=28.30 Aligned_cols=28 Identities=18% Similarity=0.235 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012379 224 LIAHQEERDAISSKIEVSQAHLELLKRT 251 (465)
Q Consensus 224 l~~~~~e~~sl~~q~~~~~~~LdkL~kt 251 (465)
+..+.+.++.|....-....+++.++|.
T Consensus 221 lnah~~sLqwl~d~st~~e~k~d~i~K~ 248 (254)
T KOG2196|consen 221 LNAHMDSLQWLDDNSTQLEKKLDKIKKL 248 (254)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 4444555555555555555555555554
No 410
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=51.45 E-value=2e+02 Score=30.44 Aligned_cols=26 Identities=23% Similarity=0.463 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 012379 128 DKLDKEVDDVTRDIEAYEACLQRLEG 153 (465)
Q Consensus 128 e~L~~qle~~~~E~d~Y~~fL~~L~~ 153 (465)
+.|++++.++++....|..-++.+.+
T Consensus 7 ~eL~~efq~Lqethr~Y~qKleel~~ 32 (330)
T PF07851_consen 7 EELQKEFQELQETHRSYKQKLEELSK 32 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45888888888888888877776654
No 411
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=51.42 E-value=2.3e+02 Score=31.99 Aligned_cols=14 Identities=29% Similarity=0.608 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHhc
Q 012379 140 DIEAYEACLQRLEG 153 (465)
Q Consensus 140 E~d~Y~~fL~~L~~ 153 (465)
+.+.|+.-++.|+.
T Consensus 192 ~~~~yk~~v~~i~~ 205 (555)
T TIGR03545 192 DLEEYKKRLEAIKK 205 (555)
T ss_pred hHHHHHHHHHHHHh
Confidence 33445544444443
No 412
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=51.28 E-value=48 Score=26.30 Aligned_cols=29 Identities=34% Similarity=0.578 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 171 IEEEERKLEAAIEETEKQNAEVNAELKEL 199 (465)
Q Consensus 171 Le~EE~~L~~eL~~LE~e~~~l~~el~~l 199 (465)
+..+..++.+++++++++.+++.+++..+
T Consensus 22 ~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 22 LNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444444444444
No 413
>PLN02372 violaxanthin de-epoxidase
Probab=51.26 E-value=2e+02 Score=31.44 Aligned_cols=81 Identities=21% Similarity=0.250 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHH
Q 012379 161 EADFLKEKLKIEEE----ERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQ-LIAHQEERDAIS 235 (465)
Q Consensus 161 ee~l~~e~~~Le~E----E~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~q-l~~~~~e~~sl~ 235 (465)
+.++.+-.+.+.+| +++++++.++++++...+-+.. .+++..++|++.|..|.++++.-+.+ +..+..+...++
T Consensus 367 ~~~~e~~e~~i~~e~~~~~~e~~~~v~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~f~~~lskee~~~l~~~~~~~~~ve 445 (455)
T PLN02372 367 EKDVEEGEKTIVKEARQIEEELEKEVEKLGKEEESLFKRV-ALEEGLKELEQDEENFLKELSKEEKELLEKLKMEASEVE 445 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH
Q 012379 236 SKIEVSQ 242 (465)
Q Consensus 236 ~q~~~~~ 242 (465)
..+..+.
T Consensus 446 k~f~~~~ 452 (455)
T PLN02372 446 KLFGRAL 452 (455)
T ss_pred HHhhhcc
No 414
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=50.98 E-value=1.9e+02 Score=26.04 Aligned_cols=90 Identities=10% Similarity=0.105 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 130 LDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFL---KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 206 (465)
Q Consensus 130 L~~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~---~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L 206 (465)
...+++.+...++.|..-+..... ..++...+. .=+..|..........+..++.+.+.....+.+...+.+.+
T Consensus 35 ~~~~L~~L~~y~~~y~~~~~~~~~---~g~~~~~l~~~~~fi~~L~~~I~~q~~~v~~~~~~ve~~r~~~~~a~~~~k~l 111 (147)
T PRK05689 35 AEQQLKMLEDYRLEYRQQLNDRGS---AGMTSSWWINYQQFLQQLEKAITQQRQQLTQWTQKVDNARKYWQEKKQRLEAL 111 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc---CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555543332211 123433332 22456777777777888888888888888888888888888
Q ss_pred HHHHHHHHHHHhHHHH
Q 012379 207 KELEERYWQEFNNFQF 222 (465)
Q Consensus 207 ~~~E~~~w~e~n~~q~ 222 (465)
+.+-++...++...+.
T Consensus 112 EkL~ek~~~~~~~~e~ 127 (147)
T PRK05689 112 ETLQERYQTEARLAEN 127 (147)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888877777765543
No 415
>PRK14160 heat shock protein GrpE; Provisional
Probab=50.64 E-value=2.6e+02 Score=27.68 Aligned_cols=42 Identities=29% Similarity=0.406 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 012379 180 AAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQ 221 (465)
Q Consensus 180 ~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q 221 (465)
..+..++++...+.+++..++.+..++.+.-.+.-.++.+|+
T Consensus 54 ~~~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~R 95 (211)
T PRK14160 54 VKIEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYR 95 (211)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555444433333333343333
No 416
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=50.37 E-value=2.5e+02 Score=32.95 Aligned_cols=39 Identities=21% Similarity=0.337 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 173 EEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEE 211 (465)
Q Consensus 173 ~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~ 211 (465)
++.+.|.++++.+.++.++...+-+.+....+.|-.+++
T Consensus 216 e~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~ 254 (916)
T KOG0249|consen 216 EDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELD 254 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 333344444444444444444444444444444433333
No 417
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=50.32 E-value=3.7e+02 Score=29.29 Aligned_cols=86 Identities=19% Similarity=0.180 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 012379 162 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKE-LELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEV 240 (465)
Q Consensus 162 e~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~-le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~ 240 (465)
+.+.+|+..+++-...|++..+.|+.+...=-.=+.+ |++|.-+-+.+|++.-....-.|.+...+..|+.+++.++.|
T Consensus 263 ~aileeL~eIk~~q~~Leesye~Lke~~krdy~fi~etLQEERyR~erLEEqLNdlteLqQnEi~nLKqElasmeervaY 342 (455)
T KOG3850|consen 263 DAILEELREIKETQALLEESYERLKEQIKRDYKFIAETLQEERYRYERLEEQLNDLTELQQNEIANLKQELASMEERVAY 342 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH
Q 012379 241 SQAHLEL 247 (465)
Q Consensus 241 ~~~~Ldk 247 (465)
....-.|
T Consensus 343 QsyERaR 349 (455)
T KOG3850|consen 343 QSYERAR 349 (455)
T ss_pred HHHHHHH
No 418
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=49.80 E-value=2.4e+02 Score=29.18 Aligned_cols=121 Identities=6% Similarity=0.103 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cccc-cCCCHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Q 012379 122 CMRVLSDKLDKEVDDVTRDIEAYEACLQRLE--GEAR-DVLSEADFLKEKLKIEEEERKLEA-------AIEETEKQNAE 191 (465)
Q Consensus 122 C~d~Lle~L~~qle~~~~E~d~Y~~fL~~L~--~~~~-~~~~ee~l~~e~~~Le~EE~~L~~-------eL~~LE~e~~~ 191 (465)
=.+.-++.++++++.++.+...|+.--.-+. .+.. ....-.++..++.+++.+...+.. ++..++.+.+.
T Consensus 174 fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~~i~~ 253 (362)
T TIGR01010 174 FAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQARIKS 253 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHH
Confidence 3445566667777777777766665321111 1000 000113344455555555544432 34455555555
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 192 VNAELKELELKSKRF-KELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQ 242 (465)
Q Consensus 192 l~~el~~le~e~~~L-~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~ 242 (465)
++++|.+...+...- ......--.+|..++++..-.+.-..++..+++.+.
T Consensus 254 l~~~i~~e~~~i~~~~~~~l~~~~~~~~~L~re~~~a~~~y~~~l~r~~~a~ 305 (362)
T TIGR01010 254 LRKQIDEQRNQLSGGLGDSLNEQTADYQRLVLQNELAQQQLKAALTSLQQTR 305 (362)
T ss_pred HHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555544333210 001111223566666666666666666666666665
No 419
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=49.73 E-value=4.1e+02 Score=29.64 Aligned_cols=37 Identities=14% Similarity=0.251 Sum_probs=24.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 012379 117 PLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEG 153 (465)
Q Consensus 117 PLC~eC~d~Lle~L~~qle~~~~E~d~Y~~fL~~L~~ 153 (465)
|-..+..++.-.+=+....+.+.+.+.|+.....++.
T Consensus 92 ~~aK~vfel~r~qE~Trq~E~~~k~~~~eA~qa~~~~ 128 (630)
T KOG0742|consen 92 PYAKDVFELARMQEQTRQAEQQAKTKEYEAAQAQLKS 128 (630)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 5566777766666666666667777778877766543
No 420
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=49.51 E-value=3.3e+02 Score=28.45 Aligned_cols=18 Identities=39% Similarity=0.503 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 012379 174 EERKLEAAIEETEKQNAE 191 (465)
Q Consensus 174 EE~~L~~eL~~LE~e~~~ 191 (465)
+|.++.+.|.+|+++...
T Consensus 132 ~E~~lvq~I~~L~k~le~ 149 (294)
T COG1340 132 EERELVQKIKELRKELED 149 (294)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555555555555443
No 421
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=49.28 E-value=2.3e+02 Score=28.69 Aligned_cols=16 Identities=25% Similarity=0.117 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 012379 222 FQLIAHQEERDAISSK 237 (465)
Q Consensus 222 ~ql~~~~~e~~sl~~q 237 (465)
.++...+.+++...++
T Consensus 196 ~~l~~l~~~~~~~~~~ 211 (301)
T PF14362_consen 196 AELDTLQAQIDAAIAA 211 (301)
T ss_pred HHHHHHHHhHHHHHHH
Confidence 3333333333333333
No 422
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=49.13 E-value=2.5e+02 Score=29.09 Aligned_cols=27 Identities=7% Similarity=0.201 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012379 223 QLIAHQEERDAISSKIEVSQAHLELLK 249 (465)
Q Consensus 223 ql~~~~~e~~sl~~q~~~~~~~LdkL~ 249 (465)
++...+.+...+.++++.++.+|+.+.
T Consensus 159 ~~~~~~~~l~~~~~~l~~~~~~l~~~~ 185 (370)
T PRK11578 159 QIGTIDAQIKRNQASLDTAKTNLDYTR 185 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCE
Confidence 334444555666777777777766544
No 423
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=49.08 E-value=3.5e+02 Score=29.77 Aligned_cols=29 Identities=24% Similarity=0.263 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 167 EKLKIEEEERKLEAAIEETEKQNAEVNAE 195 (465)
Q Consensus 167 e~~~Le~EE~~L~~eL~~LE~e~~~l~~e 195 (465)
+.+++|++-.+|.+.|.++-.....+..+
T Consensus 174 e~kqlEe~ieeL~qsl~kd~~~~~~l~~e 202 (446)
T KOG4438|consen 174 EVKQLEENIEELNQSLLKDFNQQMSLLAE 202 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555544444444433
No 424
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=49.07 E-value=2e+02 Score=25.83 Aligned_cols=68 Identities=18% Similarity=0.254 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 127 SDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 200 (465)
Q Consensus 127 le~L~~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le 200 (465)
.+..+.-++.+..+...|.-.+.++.-.. +-...|.+.-+....+...+++.+.++.+++..+|...+
T Consensus 41 ~e~~~~~~e~~l~~l~~~e~~~~k~q~~~------~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak 108 (139)
T PF05615_consen 41 SEESQFLYERLLKELAQFEFSILKSQLIL------EMNKRERENYEQLNEEIEQEIEQAKKEIEELKEELEEAK 108 (139)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555566665555443210 111223333444444444555555555554544444443
No 425
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=48.96 E-value=2.2e+02 Score=26.29 Aligned_cols=38 Identities=18% Similarity=0.425 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 176 RKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQE 216 (465)
Q Consensus 176 ~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e 216 (465)
+.|..-|++||+++..|..+++..+-. |+++.+.|.+-
T Consensus 54 ~~l~~llkqLEkeK~~Le~qlk~~e~r---LeQEsKAyhk~ 91 (129)
T PF15372_consen 54 ESLNQLLKQLEKEKRSLENQLKDYEWR---LEQESKAYHKA 91 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 556677888888888888888887743 56666555543
No 426
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=48.96 E-value=4.3e+02 Score=29.69 Aligned_cols=26 Identities=4% Similarity=0.199 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 124 RVLSDKLDKEVDDVTRDIEAYEACLQ 149 (465)
Q Consensus 124 d~Lle~L~~qle~~~~E~d~Y~~fL~ 149 (465)
+.+-..+..+++++..+.+.+..-..
T Consensus 412 ~LIk~~Y~~RI~eLt~qlQ~adSKa~ 437 (518)
T PF10212_consen 412 QLIKSYYMSRIEELTSQLQHADSKAV 437 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667777777666666554333
No 427
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=48.71 E-value=2.8e+02 Score=31.10 Aligned_cols=80 Identities=15% Similarity=0.252 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 121 ECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 200 (465)
Q Consensus 121 eC~d~Lle~L~~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le 200 (465)
-|+..|-+.=+.|+..+.+..+.|..-.+++..+. ..++.++.|-+.+...|+-.|+...++....-++.+.+|
T Consensus 17 r~~~~l~~g~e~ef~rl~k~fed~~ek~~r~~ae~------~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae 90 (604)
T KOG3564|consen 17 RDIEILGEGNEDEFIRLRKDFEDFEEKWKRTDAEL------GKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAE 90 (604)
T ss_pred HHHHHhcCccHHHHHHHHHHHHHHHHHHhhhhHHH------HHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHh
Confidence 45556655555555555555555554444443221 122333344444444444444444444333333333333
Q ss_pred HHHHHH
Q 012379 201 LKSKRF 206 (465)
Q Consensus 201 ~e~~~L 206 (465)
.+.+.+
T Consensus 91 ~d~~~~ 96 (604)
T KOG3564|consen 91 ADCEKL 96 (604)
T ss_pred hhHHHH
Confidence 333333
No 428
>smart00338 BRLZ basic region leucin zipper.
Probab=48.65 E-value=74 Score=24.96 Aligned_cols=29 Identities=24% Similarity=0.463 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 178 LEAAIEETEKQNAEVNAELKELELKSKRF 206 (465)
Q Consensus 178 L~~eL~~LE~e~~~l~~el~~le~e~~~L 206 (465)
|+.++..|+.+..+|..++..|+.+...|
T Consensus 31 Le~~~~~L~~en~~L~~~~~~l~~e~~~l 59 (65)
T smart00338 31 LERKVEQLEAENERLKKEIERLRRELEKL 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444333
No 429
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=48.65 E-value=3.5e+02 Score=28.46 Aligned_cols=36 Identities=28% Similarity=0.450 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 012379 171 IEEEERKLEAAIEE-TEKQNAEVNAELKELELKSKRF 206 (465)
Q Consensus 171 Le~EE~~L~~eL~~-LE~e~~~l~~el~~le~e~~~L 206 (465)
++.+|++|.+.++. -+++.+++..+|..|+.-+.++
T Consensus 51 VqaqEreLLe~v~~rYqR~y~ema~~L~~LeavLqRi 87 (324)
T PF12126_consen 51 VQAQERELLEAVEARYQRDYEEMAGQLGRLEAVLQRI 87 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 35555555555543 3455555555555555544444
No 430
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=48.41 E-value=1e+02 Score=24.13 Aligned_cols=29 Identities=34% Similarity=0.547 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 178 LEAAIEETEKQNAEVNAELKELELKSKRF 206 (465)
Q Consensus 178 L~~eL~~LE~e~~~l~~el~~le~e~~~L 206 (465)
|+.++..|+.+...+..++..|+.+...|
T Consensus 31 Le~~~~~L~~en~~L~~~~~~L~~~~~~L 59 (64)
T PF00170_consen 31 LEEKVEELESENEELKKELEQLKKEIQSL 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444333
No 431
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=48.01 E-value=3.1e+02 Score=27.72 Aligned_cols=17 Identities=18% Similarity=0.325 Sum_probs=11.3
Q ss_pred eccccCCCCCCCCCChH
Q 012379 269 INNFRLGRLPKIPVEWD 285 (465)
Q Consensus 269 INGlRLGrlp~~~V~W~ 285 (465)
|+...-|--|..||+..
T Consensus 251 i~~~gTG~~~P~~~~fE 267 (269)
T cd07673 251 AESKGTGKERPGPIEFE 267 (269)
T ss_pred HHhcCCCCCCCCCCCCC
Confidence 66666677777777654
No 432
>PF13166 AAA_13: AAA domain
Probab=47.98 E-value=4.5e+02 Score=29.60 Aligned_cols=10 Identities=20% Similarity=0.687 Sum_probs=4.8
Q ss_pred HHHHHHHHHH
Q 012379 128 DKLDKEVDDV 137 (465)
Q Consensus 128 e~L~~qle~~ 137 (465)
+.+...++.+
T Consensus 332 ~~l~~~l~~l 341 (712)
T PF13166_consen 332 EALKEELEEL 341 (712)
T ss_pred HHHHHHHHHH
Confidence 4455555443
No 433
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=47.31 E-value=1.3e+02 Score=32.16 Aligned_cols=16 Identities=19% Similarity=0.339 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHh
Q 012379 137 VTRDIEAYEACLQRLE 152 (465)
Q Consensus 137 ~~~E~d~Y~~fL~~L~ 152 (465)
..+..+.|+.+++.+.
T Consensus 213 ~~r~~~Yf~~l~~~f~ 228 (406)
T PF02388_consen 213 SIRSLEYFENLYDAFG 228 (406)
T ss_dssp ----HHHHHHHHHHCC
T ss_pred cccCHHHHHHHHHhcC
Confidence 3456777888888773
No 434
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=46.94 E-value=2.1e+02 Score=25.46 Aligned_cols=17 Identities=12% Similarity=0.233 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 012379 232 DAISSKIEVSQAHLELL 248 (465)
Q Consensus 232 ~sl~~q~~~~~~~LdkL 248 (465)
+++...+......||++
T Consensus 84 ~~I~~~L~~inkRLD~~ 100 (102)
T PF01519_consen 84 QLILKTLQSINKRLDKM 100 (102)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 44555556666666665
No 435
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=46.74 E-value=48 Score=26.33 Aligned_cols=31 Identities=29% Similarity=0.382 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 176 RKLEAAIEETEKQNAEVNAELKELELKSKRF 206 (465)
Q Consensus 176 ~~L~~eL~~LE~e~~~l~~el~~le~e~~~L 206 (465)
..+.+++.+++++.+++.++..+|+.+.+.|
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555566666666655555555555555
No 436
>KOG4796 consensus RNA polymerase II elongation factor [Transcription]
Probab=46.53 E-value=1.9e+02 Score=32.67 Aligned_cols=46 Identities=26% Similarity=0.460 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHH
Q 012379 178 LEAAIEETEKQNAEVNAELK-ELELKSKRFKELEERYWQEFNNFQFQ 223 (465)
Q Consensus 178 L~~eL~~LE~e~~~l~~el~-~le~e~~~L~~~E~~~w~e~n~~q~q 223 (465)
|-++++.+.....+|+++|+ .+-.-..+.+..|++.|++|..+...
T Consensus 520 Lharve~vs~rF~~Lea~L~srls~gS~ey~~i~~qI~qEYeki~~d 566 (604)
T KOG4796|consen 520 LHARVETVSRRFRQLEAQLKSRLSPGSPEYKQIEKQILQEYEKIRKD 566 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHhhcC
Confidence 34444444444445555554 33333334578888999999988843
No 437
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=46.53 E-value=2e+02 Score=25.15 Aligned_cols=37 Identities=24% Similarity=0.258 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 165 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELEL 201 (465)
Q Consensus 165 ~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~ 201 (465)
.+.+.-++...+.+.+.++.+++....+.+++..+..
T Consensus 85 ~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~ 121 (126)
T TIGR00293 85 EEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQ 121 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555555555555555555555443
No 438
>PRK11281 hypothetical protein; Provisional
Probab=46.52 E-value=2.2e+02 Score=34.81 Aligned_cols=78 Identities=21% Similarity=0.137 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHh
Q 012379 178 LEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAI--------SSKIEVSQAHLELLK 249 (465)
Q Consensus 178 L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl--------~~q~~~~~~~LdkL~ 249 (465)
|++.|.+++.+.++..+++..+..+...+..+=++--....+.+.++.+...++.+. .++....+.++..|+
T Consensus 126 LEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~l~ 205 (1113)
T PRK11281 126 LESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLN 205 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444443322223333333444444444433321 134555566667776
Q ss_pred hcccCC
Q 012379 250 RTNVLN 255 (465)
Q Consensus 250 ktNV~N 255 (465)
-.|-|+
T Consensus 206 ~~~~~~ 211 (1113)
T PRK11281 206 AQNDLQ 211 (1113)
T ss_pred HHHHHH
Confidence 666655
No 439
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=46.36 E-value=1.4e+02 Score=27.35 Aligned_cols=14 Identities=36% Similarity=0.551 Sum_probs=4.7
Q ss_pred ecCCeeeeccccCCC
Q 012379 262 HDGEFGTINNFRLGR 276 (465)
Q Consensus 262 hdG~fGTINGlRLGr 276 (465)
.+-+|||| |||.+.
T Consensus 72 ~~l~~G~v-~~R~~~ 85 (149)
T PF07352_consen 72 LKLPFGTV-GFRKST 85 (149)
T ss_dssp EE-SS-EE-------
T ss_pred EEcCCeeE-EEEecC
Confidence 46789998 899986
No 440
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=46.29 E-value=1.8e+02 Score=33.45 Aligned_cols=30 Identities=27% Similarity=0.388 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 169 LKIEEEERKLEAAIEETEKQNAEVNAELKE 198 (465)
Q Consensus 169 ~~Le~EE~~L~~eL~~LE~e~~~l~~el~~ 198 (465)
++++.+-..+..+|+.......+...++..
T Consensus 178 ~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~ 207 (670)
T KOG0239|consen 178 LKLESDLGDLVTELEHVTNSISELESVLKS 207 (670)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 334444444444444444444443333333
No 441
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=46.00 E-value=1.9e+02 Score=24.69 Aligned_cols=29 Identities=24% Similarity=0.472 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 178 LEAAIEETEKQNAEVNAELKELELKSKRF 206 (465)
Q Consensus 178 L~~eL~~LE~e~~~l~~el~~le~e~~~L 206 (465)
++.++..|...+.+|+++|...+.+...|
T Consensus 37 ~e~ei~~l~~dr~rLa~eLD~~~ar~~~L 65 (89)
T PF13747_consen 37 LEEEIQRLDADRSRLAQELDQAEARANRL 65 (89)
T ss_pred HHHHHHHHHhhHHHHHHHHHhHHHHHHHH
Confidence 34444444444444444444444433333
No 442
>PF03245 Phage_lysis: Bacteriophage Rz lysis protein; InterPro: IPR004929 Many bacteriophages with Gram-negative hosts contain two auxiliary lysis genes Rz and Rz1. These genes are nested, with Rz1 occupying the last third of Rz in a +1 reading frame. Both of these genes are required for host cell lysis if the outer membrane is stabilised by millimolar concentrations of divalent cations, but are otherwise uneccessary []. The Rz protein is believed to posses endopeptidase activity, while Rz1 encodes a prolipoprotein which, after cleavage by a signal peptidase, is located in the outer membrane. It has been suggested that these two proteins may form a complex which cleaves the oligopeptide crosslinks between glycosidic strands in the peptidoglycan and the Lpp lipoproteins of the outer bacterial membrane. For more information see []. This entry represents the Rz protein and related sequences. This family is not considered to be a peptidase according to the MEROPs database.; GO: 0019835 cytolysis
Probab=45.72 E-value=1.7e+02 Score=26.40 Aligned_cols=38 Identities=13% Similarity=0.335 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 012379 189 NAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIA 226 (465)
Q Consensus 189 ~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~ 226 (465)
.......+...+.....+.++..+|++++++-+.+...
T Consensus 16 ~~~~~~~i~~~~~~~~~la~ld~k~tkEL~~Ak~e~~~ 53 (125)
T PF03245_consen 16 LEAANAAIEDMQQRQQALAALDAKYTKELADAKAEIDR 53 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 33333455555666667788888888888777665543
No 443
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=45.58 E-value=2e+02 Score=27.72 Aligned_cols=19 Identities=37% Similarity=0.667 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 012379 191 EVNAELKELELKSKRFKEL 209 (465)
Q Consensus 191 ~l~~el~~le~e~~~L~~~ 209 (465)
+++.||++++.++..|+..
T Consensus 124 eL~~eI~~L~~~i~~le~~ 142 (171)
T PF04799_consen 124 ELEDEIKQLEKEIQRLEEI 142 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555444
No 444
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=45.47 E-value=1.2e+02 Score=26.09 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Q 012379 131 DKEVDDVTRDIEAYEACLQRLEGE 154 (465)
Q Consensus 131 ~~qle~~~~E~d~Y~~fL~~L~~~ 154 (465)
.+|++.+++....|..-|+.++..
T Consensus 4 ~~eId~lEekl~~cr~~le~ve~r 27 (85)
T PF15188_consen 4 AKEIDGLEEKLAQCRRRLEAVESR 27 (85)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHH
Confidence 467777777777777777766543
No 445
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=45.29 E-value=49 Score=27.75 Aligned_cols=33 Identities=18% Similarity=0.326 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 180 AAIEETEKQNAEVNAELKELELKSKRFKELEERYWQ 215 (465)
Q Consensus 180 ~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~ 215 (465)
++|.++-+.+.+|+++|..+|.++ -+.|..|+.
T Consensus 2 ~~L~~l~~~k~~Le~~L~~lE~qI---y~~Et~YL~ 34 (80)
T PF09340_consen 2 KELKELLQKKKKLEKDLAALEKQI---YDKETSYLE 34 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 456666667777777777777654 333444554
No 446
>PF04518 Effector_1: Effector from type III secretion system; InterPro: IPR007606 This family contains several uncharacterised chlamydial proteins.
Probab=45.21 E-value=1.7e+02 Score=31.62 Aligned_cols=91 Identities=23% Similarity=0.357 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 165 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAH 244 (465)
Q Consensus 165 ~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~ 244 (465)
.+.+.+|++|.......|+..++.++.+++.+...++-.+--+++-.+.-...+.++ ..++.+..++......
T Consensus 199 ~~a~~~l~~E~~~~~~di~~~~~A~~~l~~~~~~V~~d~~lT~~Qk~~l~d~l~~Y~-------~~l~~i~~qL~~L~~~ 271 (379)
T PF04518_consen 199 FMALAKLEKEREQIRRDIKSCERAKAVLNKQLARVKADAKLTSEQKSELLDSLNNYK-------DNLNAISNQLSLLQSL 271 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 456677889999899999988888888877777765432111222223333333333 3334555555555555
Q ss_pred HHHHhh-----cccCCCceeeee
Q 012379 245 LELLKR-----TNVLNDAFPIWH 262 (465)
Q Consensus 245 LdkL~k-----tNV~Nd~F~I~h 262 (465)
|.-|.= -+=+..+|+|--
T Consensus 272 L~~L~~~~~~~~~~~~~~F~i~g 294 (379)
T PF04518_consen 272 LAPLSIQGVSDPDEVDGAFKITG 294 (379)
T ss_pred hccceeecCCCCCCcCCceEEEe
Confidence 554432 344667888854
No 447
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=45.08 E-value=1.8e+02 Score=24.20 Aligned_cols=21 Identities=14% Similarity=0.286 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 012379 228 QEERDAISSKIEVSQAHLELL 248 (465)
Q Consensus 228 ~~e~~sl~~q~~~~~~~LdkL 248 (465)
+.+...+..++.+....+..+
T Consensus 75 ~~~i~~l~~~~~~l~~~l~~~ 95 (106)
T PF01920_consen 75 EKEIKKLEKQLKYLEKKLKEL 95 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444443
No 448
>PF14992 TMCO5: TMCO5 family
Probab=45.00 E-value=3.8e+02 Score=27.84 Aligned_cols=44 Identities=16% Similarity=0.135 Sum_probs=18.1
Q ss_pred HhhcCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 106 EIATSQTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRL 151 (465)
Q Consensus 106 dIlSs~s~iDhPLC~eC~d~Lle~L~~qle~~~~E~d~Y~~fL~~L 151 (465)
+++-..-+-|+..+.-=++ +..|+.+-+.++++-..-..-...+
T Consensus 46 ~~~~~~e~e~~~~~~~e~~--l~~le~e~~~LE~~ne~l~~~~~el 89 (280)
T PF14992_consen 46 HIADRSEEEDIISEERETD--LQELELETAKLEKENEHLSKSVQEL 89 (280)
T ss_pred cccCchhHHhhhhhchHHH--HHHHHhhhHHHhhhhHhhhhhhhhh
Confidence 3343334444444333333 2445544444555444443333333
No 449
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=44.88 E-value=2.4e+02 Score=25.45 Aligned_cols=91 Identities=12% Similarity=0.190 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 128 DKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADF---LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSK 204 (465)
Q Consensus 128 e~L~~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l---~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~ 204 (465)
+..+.+++.+...+..|..-+..... ..++..++ ..=+..|..........+..++.+.+.....+.+...+.+
T Consensus 33 ~~~~~~L~~L~~~~~~~~~~~~~~~~---~g~~~~~l~~~~~fl~~L~~~i~~q~~~v~~~~~~ve~~r~~~~ea~~~~k 109 (146)
T PRK07720 33 EQVAEKLYELLKQKEDLEQAKEEKLQ---SGLSIQEIRHYQQFVTNLERTIDHYQLLVMQAREQMNRKQQDLTEKNIEVK 109 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666655543221 12343333 2234556666666777777777777777777777777888
Q ss_pred HHHHHHHHHHHHHhHHH
Q 012379 205 RFKELEERYWQEFNNFQ 221 (465)
Q Consensus 205 ~L~~~E~~~w~e~n~~q 221 (465)
.++.+-++...++..-+
T Consensus 110 ~~ekLker~~~~~~~~e 126 (146)
T PRK07720 110 KYEKMKEKKQEMFALEE 126 (146)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88877776666554443
No 450
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=44.71 E-value=5.5e+02 Score=31.42 Aligned_cols=30 Identities=7% Similarity=0.262 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Q 012379 122 CMRVLSDKLDKEVDDVTRDIE-----AYEACLQRL 151 (465)
Q Consensus 122 C~d~Lle~L~~qle~~~~E~d-----~Y~~fL~~L 151 (465)
|...-++..+.....++.... .|..|..++
T Consensus 729 ~i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~i 763 (1141)
T KOG0018|consen 729 EIKRKLQNREGEMKELEERMNKVEDRIFKGFCRRI 763 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 444455556666666554433 377776654
No 451
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=44.46 E-value=4.8e+02 Score=28.86 Aligned_cols=78 Identities=19% Similarity=0.233 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhhcccCC
Q 012379 185 TEKQNAEVNAELKELEL----KSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLEL-----LKRTNVLN 255 (465)
Q Consensus 185 LE~e~~~l~~el~~le~----e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ldk-----L~ktNV~N 255 (465)
|..|.++++..+...+. +..++-++|.-.-.+.-.+|+.|..-.+.|.++..++.-...-|+- +...-.+.
T Consensus 258 l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~reen~rlQrkL~~e~erRealcr~lsEsesslemdeery~Ne~~~~g 337 (552)
T KOG2129|consen 258 LQAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHREENERLQRKLINELERREALCRMLSESESSLEMDEERYLNEFVDFG 337 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhccC
Confidence 44444555544444433 3333444444333444445566665555666665555444333322 22223345
Q ss_pred Cceeeee
Q 012379 256 DAFPIWH 262 (465)
Q Consensus 256 d~F~I~h 262 (465)
+.|.|-.
T Consensus 338 ~s~~Va~ 344 (552)
T KOG2129|consen 338 DSVEVAL 344 (552)
T ss_pred Cceeeec
Confidence 5555543
No 452
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=44.45 E-value=1.3e+02 Score=23.84 Aligned_cols=24 Identities=25% Similarity=0.587 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 012379 130 LDKEVDDVTRDIEAYEACLQRLEG 153 (465)
Q Consensus 130 L~~qle~~~~E~d~Y~~fL~~L~~ 153 (465)
++.++..++++.+-+...+.++++
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~ 25 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEK 25 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666655543
No 453
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=44.42 E-value=3e+02 Score=30.20 Aligned_cols=92 Identities=20% Similarity=0.320 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 165 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAH 244 (465)
Q Consensus 165 ~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~ 244 (465)
..++.+|..+-+++..+++.|..++.++.++|...-.+... .-.....+.+.+.-++.....+.+.++++++...
T Consensus 28 ~~~~~~ld~~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~---~~~~l~~e~~~l~~~l~~~e~~~~~~~~~l~~~l-- 102 (429)
T COG0172 28 VDKLLELDEERRKLLRELEELQAERNELSKEIGRALKRGED---DAEELIAEVKELKEKLKELEAALDELEAELDTLL-- 102 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccch---hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--
Confidence 45666788888999999999999999998888733221111 1123445555666666555555555554443332
Q ss_pred HHHHhhcccCCCceeeeecC
Q 012379 245 LELLKRTNVLNDAFPIWHDG 264 (465)
Q Consensus 245 LdkL~ktNV~Nd~F~I~hdG 264 (465)
|.--|+-.+.=+++-|+
T Consensus 103 ---l~ipNi~~~~VPvg~de 119 (429)
T COG0172 103 ---LTIPNIPHESVPVGKDE 119 (429)
T ss_pred ---HhCCCCCccccCcCCCc
Confidence 44567777776666554
No 454
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=44.41 E-value=5.8e+02 Score=29.81 Aligned_cols=82 Identities=18% Similarity=0.309 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012379 172 EEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRT 251 (465)
Q Consensus 172 e~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~LdkL~kt 251 (465)
.+|...+...++...+.-.++.+.+..|+.+....+..=++.-..+++....+.-+.-.+..++..+......|.++++-
T Consensus 544 ~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~ 623 (698)
T KOG0978|consen 544 IKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKKE 623 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34444444444444444444444444444443333322223334444444444444444444444445555555555554
Q ss_pred cc
Q 012379 252 NV 253 (465)
Q Consensus 252 NV 253 (465)
+.
T Consensus 624 ~~ 625 (698)
T KOG0978|consen 624 ES 625 (698)
T ss_pred cc
Confidence 43
No 455
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=44.30 E-value=4.9e+02 Score=28.96 Aligned_cols=30 Identities=20% Similarity=0.375 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 012379 198 ELELKSKRFKELEERYWQEFNNFQFQLIAH 227 (465)
Q Consensus 198 ~le~e~~~L~~~E~~~w~e~n~~q~ql~~~ 227 (465)
..+++...|++.++++=.+|.++..+..+.
T Consensus 96 ~~~ek~~~l~~~~~~L~~~F~~LA~~ile~ 125 (475)
T PRK10361 96 HADDKIRQMINSEQRLSEQFENLANRIFEH 125 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666677777777776665443
No 456
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=44.12 E-value=7.5 Score=44.29 Aligned_cols=22 Identities=23% Similarity=0.498 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 012379 130 LDKEVDDVTRDIEAYEACLQRL 151 (465)
Q Consensus 130 L~~qle~~~~E~d~Y~~fL~~L 151 (465)
++-+...++.|+..|..+++..
T Consensus 310 lq~e~~~Le~el~sW~sl~~~~ 331 (722)
T PF05557_consen 310 LQLENEKLEDELNSWESLLQDI 331 (722)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 4445566667777777766643
No 457
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=43.94 E-value=2.6e+02 Score=25.67 Aligned_cols=26 Identities=12% Similarity=0.190 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 178 LEAAIEETEKQNAEVNAELKELELKS 203 (465)
Q Consensus 178 L~~eL~~LE~e~~~l~~el~~le~e~ 203 (465)
+.+.+..++.|+++++-+.+.+..+.
T Consensus 25 l~~~i~~~d~el~QLefq~kr~~~e~ 50 (131)
T PF11068_consen 25 LQEQIQQLDQELQQLEFQGKRMIKEI 50 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555554443
No 458
>KOG3595 consensus Dyneins, heavy chain [Cytoskeleton]
Probab=43.91 E-value=6.9e+02 Score=31.34 Aligned_cols=28 Identities=18% Similarity=0.204 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012379 125 VLSDKLDKEVDDVTRDIEAYEACLQRLE 152 (465)
Q Consensus 125 ~Lle~L~~qle~~~~E~d~Y~~fL~~L~ 152 (465)
....-+......+...+..|...|+++.
T Consensus 700 ~f~~ll~~k~~~~~~~~~r~~~gl~kl~ 727 (1395)
T KOG3595|consen 700 TFKKLLKEKRSEVRLRKLRLELGLDKLK 727 (1395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHhh
Confidence 3444455566666666666666666664
No 459
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=43.91 E-value=79 Score=31.05 Aligned_cols=45 Identities=18% Similarity=0.381 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 012379 178 LEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLI 225 (465)
Q Consensus 178 L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~ 225 (465)
+......++++...++.+|..++.+ ++..|++||+.|..++..+.
T Consensus 191 i~~~~~~l~~~~~~~~~~i~~~~~r---l~~~~~~l~~qf~~me~~i~ 235 (239)
T PF07195_consen 191 ITSRIDSLNSQIKSLDKQIEDLEER---LESKEERLRKQFSAMESLIS 235 (239)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666643 67777889999888876553
No 460
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=43.82 E-value=71 Score=33.87 Aligned_cols=121 Identities=21% Similarity=0.337 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 012379 129 KLDKEVDDVTRDIEAYEACLQRLEGEARDVLSE--ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKS--- 203 (465)
Q Consensus 129 ~L~~qle~~~~E~d~Y~~fL~~L~~~~~~~~~e--e~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~--- 203 (465)
+|..+.+..++|.+.+..-++...........+ +...+++..+.....++..+++.+.+...+...++..+..+.
T Consensus 59 qLrE~~et~~KE~~~~eKe~kE~~~K~~~~~~e~~ek~~k~l~el~~~~~elkkEie~IKk~q~e~~~~i~~~~~~~~~~ 138 (370)
T PF02994_consen 59 QLREQDETPEKELKNKEKELKENIIKNLEVLKEEKEKSIKELNELKKRIKELKKEIENIKKNQSEMKLEIENLKKKLENI 138 (370)
T ss_dssp -----------------------------------------------------------H--------------------
T ss_pred HHHHhhhhhhhhhhhhhhhhhHhhhhhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHH
Q ss_pred -----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhccc
Q 012379 204 -----KRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELL----KRTNV 253 (465)
Q Consensus 204 -----~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~LdkL----~ktNV 253 (465)
.++++.| ...+.++-.+.+.......+..++......|+-| |+.||
T Consensus 139 ~~~l~~Ri~e~E----eris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsRRnNi 193 (370)
T PF02994_consen 139 DESLNSRIDELE----ERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRSRRNNI 193 (370)
T ss_dssp -----HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEE
T ss_pred HHHHHHHHHHHH----hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccCCce
No 461
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=43.66 E-value=7.7 Score=44.18 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHH
Q 012379 128 DKLDKEVDDVT---RDIEAYEACLQRL 151 (465)
Q Consensus 128 e~L~~qle~~~---~E~d~Y~~fL~~L 151 (465)
..|+.+.+++. ++...|+.-++-+
T Consensus 277 ~~L~q~~~eL~~~A~~a~~LrDElD~l 303 (713)
T PF05622_consen 277 DELRQENEELQAEAREARALRDELDEL 303 (713)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 33444444433 2333444444433
No 462
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=43.62 E-value=2.4e+02 Score=25.11 Aligned_cols=12 Identities=25% Similarity=0.446 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 012379 170 KIEEEERKLEAA 181 (465)
Q Consensus 170 ~Le~EE~~L~~e 181 (465)
+|...-.-|.+.
T Consensus 9 KLraQ~~vLKKa 20 (102)
T PF10205_consen 9 KLRAQNQVLKKA 20 (102)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 463
>PLN02678 seryl-tRNA synthetase
Probab=43.49 E-value=1.9e+02 Score=31.75 Aligned_cols=25 Identities=20% Similarity=0.505 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCceee
Q 012379 349 AMTLFLSCLKDFAEFANSKDQENNIPPDKCFKLPYKI 385 (465)
Q Consensus 349 AM~afL~cl~q~~~~~~~~d~~~~~~~~~~~~LPY~I 385 (465)
+...|=.++....+++. .+.|||++
T Consensus 301 s~~~~e~~l~~~~~i~~------------~L~lpyrv 325 (448)
T PLN02678 301 SWEMHEEMLKNSEDFYQ------------SLGIPYQV 325 (448)
T ss_pred HHHHHHHHHHHHHHHHH------------HcCCCeEE
Confidence 55555555555554543 36777777
No 464
>PRK12765 flagellar capping protein; Provisional
Probab=43.26 E-value=1.2e+02 Score=34.45 Aligned_cols=57 Identities=5% Similarity=0.071 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 182 IEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVS 241 (465)
Q Consensus 182 L~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~ 241 (465)
-+-+.++...|++++..++ .+++..+++|++.|+.+..-+..+......|..++..+
T Consensus 534 ~~~l~~~~~~l~~~~~~~~---~rl~~~~~r~~~qf~alD~~i~~l~~t~s~l~~~~~~~ 590 (595)
T PRK12765 534 DESLTNEIKSLTTSKESTQ---ELIDTKYETMANKWLQYDSIIAKLEQQFSTLKNMINAA 590 (595)
T ss_pred hhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3344455555555444444 35677788899999988777766665555555555443
No 465
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=43.17 E-value=2.1e+02 Score=24.36 Aligned_cols=29 Identities=24% Similarity=0.486 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 012379 127 SDKLDKEVDDVTRDIEAYEACLQRLEGEA 155 (465)
Q Consensus 127 le~L~~qle~~~~E~d~Y~~fL~~L~~~~ 155 (465)
.+.+..++..+.++.+.-..-++.+.++.
T Consensus 14 ~e~~~~e~~~L~~~~~~L~~~~R~~~Ged 42 (100)
T PF01486_consen 14 HEELQQEIAKLRKENESLQKELRHLMGED 42 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 44555556666666655555555555544
No 466
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.05 E-value=3.9e+02 Score=27.49 Aligned_cols=36 Identities=22% Similarity=0.307 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 172 EEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 207 (465)
Q Consensus 172 e~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~ 207 (465)
+.-+..+..+++.|..-..+++..+..|+.+..+++
T Consensus 161 e~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk~e~~ 196 (265)
T COG3883 161 EEKQAALEDKLETLVALQNELETQLNSLNSQKAEKN 196 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444444444443333
No 467
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.02 E-value=2.7e+02 Score=31.94 Aligned_cols=71 Identities=14% Similarity=0.104 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccc-c-CCCHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 128 DKLDKEVDDVTRDIEAYEACLQRLEGEAR-D-VLSEADFLKEKLKIEEE-------ERKLEAAIEETEKQNAEVNAELKE 198 (465)
Q Consensus 128 e~L~~qle~~~~E~d~Y~~fL~~L~~~~~-~-~~~ee~l~~e~~~Le~E-------E~~L~~eL~~LE~e~~~l~~el~~ 198 (465)
..|.++|+++.+-|....--|+++..... . ..... ....+..||+| -.+|.+||+.+++..++++.....
T Consensus 462 ~sL~~~LeqAsK~CRIL~~RL~K~~R~q~R~~~~~~~-d~~kIK~LE~e~R~S~~Ls~~L~~ElE~~~~~~~~~e~~~ev 540 (852)
T KOG4787|consen 462 ISLATKLEQANKQCRILNERLNKLHRKQVRDGEIQYS-DELKIKILELEKRLSEKLAIDLVSELEGKIPTIDEIEQCCEV 540 (852)
T ss_pred HHHHHHHHHHhchhHHHHHHHhHHHHHHHhhhhhccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHhHHHHHHHH
Confidence 34667777777777766666665543221 1 01100 01111222222 234666666666666666555554
Q ss_pred H
Q 012379 199 L 199 (465)
Q Consensus 199 l 199 (465)
|
T Consensus 541 L 541 (852)
T KOG4787|consen 541 L 541 (852)
T ss_pred H
Confidence 4
No 468
>PF15369 KIAA1328: Uncharacterised protein KIAA1328
Probab=43.02 E-value=3.7e+02 Score=28.48 Aligned_cols=105 Identities=16% Similarity=0.179 Sum_probs=0.0
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 012379 162 ADFLKEKLKI----EEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSK 237 (465)
Q Consensus 162 e~l~~e~~~L----e~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q 237 (465)
.++.+|+.++ |.-+.+|..+-+..|+...+|+++-.-+-.|...|...=.+--..+.-+|.=|.+-++.+.--.+.
T Consensus 11 ~~li~~la~~~~~~e~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~~~qyrecqell~lyq~ylseqq~kl~~s~~~ 90 (328)
T PF15369_consen 11 ANLIKELARVSEEKEVTEERLKAEQESFEKKIRQLEEQNELIIKEREDLQQQYRECQELLSLYQKYLSEQQEKLTMSLSE 90 (328)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Q ss_pred HHHHHHHHHHHhhcccCCCceeeeecCCe
Q 012379 238 IEVSQAHLELLKRTNVLNDAFPIWHDGEF 266 (465)
Q Consensus 238 ~~~~~~~LdkL~ktNV~Nd~F~I~hdG~f 266 (465)
+..+..+=..+......-..=....||.|
T Consensus 91 l~~~~~~~q~vsskKs~~qsss~eLDGSY 119 (328)
T PF15369_consen 91 LSAARMKEQQVSSKKSPLQSSSSELDGSY 119 (328)
T ss_pred hhhhhhhhccCCcCCCCCCCCCCCCCcch
No 469
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=42.82 E-value=1.7e+02 Score=23.53 Aligned_cols=28 Identities=29% Similarity=0.434 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 180 AAIEETEKQNAEVNAELKELELKSKRFK 207 (465)
Q Consensus 180 ~eL~~LE~e~~~l~~el~~le~e~~~L~ 207 (465)
..|.+++....+.+.-|..++.|...+.
T Consensus 25 ~~i~~~e~~l~ea~~~l~qMe~E~~~~p 52 (79)
T PF05008_consen 25 SLIREIERDLDEAEELLKQMELEVRSLP 52 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4455555566666666666666655553
No 470
>PRK14127 cell division protein GpsB; Provisional
Probab=42.79 E-value=94 Score=27.78 Aligned_cols=53 Identities=19% Similarity=0.245 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHH
Q 012379 162 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK-----------------SKRFKELEERYW 214 (465)
Q Consensus 162 e~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e-----------------~~~L~~~E~~~w 214 (465)
+++.+..+.+..|-.+|..++..|+.+.+++..++...+.. +++|..+|+..+
T Consensus 33 d~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~tn~DiLKRls~LEk~VF 102 (109)
T PRK14127 33 DDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVSVGASSSSVATTQPSSSATNYDILKRLSNLEKHVF 102 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccCCCCCcchHHHHHHHHHHHHHHh
No 471
>PHA03161 hypothetical protein; Provisional
Probab=42.72 E-value=90 Score=29.47 Aligned_cols=15 Identities=40% Similarity=0.884 Sum_probs=12.8
Q ss_pred eeeccccCCCCCCCC
Q 012379 267 GTINNFRLGRLPKIP 281 (465)
Q Consensus 267 GTINGlRLGrlp~~~ 281 (465)
.||=..||+++|.+|
T Consensus 132 dtI~~WRLE~lPrcP 146 (150)
T PHA03161 132 DTIMQWRIEALPRVP 146 (150)
T ss_pred hHHHHHHHhhCCCCC
Confidence 488889999999966
No 472
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=42.26 E-value=3e+02 Score=29.18 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 163 DFLKEKLKIEEEERKLEAAIEETEKQ 188 (465)
Q Consensus 163 ~l~~e~~~Le~EE~~L~~eL~~LE~e 188 (465)
++.+|-++|++.-+...+.++++.+-
T Consensus 8 eL~~efq~Lqethr~Y~qKleel~~l 33 (330)
T PF07851_consen 8 ELQKEFQELQETHRSYKQKLEELSKL 33 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555544433
No 473
>PRK10722 hypothetical protein; Provisional
Probab=42.22 E-value=97 Score=31.47 Aligned_cols=40 Identities=15% Similarity=0.243 Sum_probs=27.8
Q ss_pred CCCCCccchhHHHHHHHHHhhcCCcccCCcch----HHHHHHHHH
Q 012379 88 QPNNSGFHSTITVLKRAFEIATSQTQVEQPLC----LECMRVLSD 128 (465)
Q Consensus 88 ~~~~~~ls~~i~~l~~lFdIlSs~s~iDhPLC----~eC~d~Lle 128 (465)
.|..+.-.-+......|.++- +..-.+.||= .||++.|..
T Consensus 47 ~pe~~~~Dyr~~~C~~iW~~~-~~~a~~N~LYWlR~mdcAdRL~~ 90 (247)
T PRK10722 47 IPEYQLADYRSTECDDIWALQ-GKAAENNPLYWLRAMDCADRLMP 90 (247)
T ss_pred CCcchhhhhhhccHhHHhccc-CcchhcchHHHHHHHHHHHhcCH
Confidence 345556666777778888765 4444677764 699999877
No 474
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=42.22 E-value=1.7e+02 Score=27.54 Aligned_cols=49 Identities=20% Similarity=0.302 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 012379 175 ERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQ 223 (465)
Q Consensus 175 E~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~q 223 (465)
.....+++++-+++.+++++|.++++.+.++.+++-+..-+..+.|..-
T Consensus 68 ~~~~~~~i~~Y~~~~~~~~~e~~~l~~~A~~~e~~~d~~~~~~~~f~~a 116 (157)
T PF14235_consen 68 RAAYQKKIARYKKEKARYKSEAEELEAKAKEAEAESDHALHHHHRFDLA 116 (157)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcccchhHHH
Confidence 4667778888888888888888888888877776666666655555543
No 475
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=42.20 E-value=1.9e+02 Score=31.20 Aligned_cols=28 Identities=14% Similarity=0.309 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCceeee
Q 012379 347 DKAMTLFLSCLKDFAEFANSKDQENNIPPDKCFKLPYKIE 386 (465)
Q Consensus 347 D~AM~afL~cl~q~~~~~~~~d~~~~~~~~~~~~LPY~I~ 386 (465)
+.|...|-.+++-..++.+ .+.|||++-
T Consensus 292 e~s~~~~~~~l~~~~~i~~------------~Lglpyr~v 319 (425)
T PRK05431 292 EDSYAELEELTANAEEILQ------------KLELPYRVV 319 (425)
T ss_pred HHHHHHHHHHHHHHHHHHH------------HcCCcEEEE
Confidence 7888888887777776664 378999883
No 476
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=42.20 E-value=82 Score=27.86 Aligned_cols=15 Identities=13% Similarity=0.277 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHHH
Q 012379 185 TEKQNAEVNAELKEL 199 (465)
Q Consensus 185 LE~e~~~l~~el~~l 199 (465)
+..+.+++...+.++
T Consensus 92 ~~~~~~~l~~~~~~~ 106 (118)
T PF13815_consen 92 LQQEIEKLKQKLKKQ 106 (118)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 477
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=42.15 E-value=2.6e+02 Score=28.03 Aligned_cols=78 Identities=22% Similarity=0.279 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 127 SDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 206 (465)
Q Consensus 127 le~L~~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L 206 (465)
++.|..+++.+.+.++.|..-++++..... ....++..-..+.++....+......+..++..+..++.++..+...+
T Consensus 70 le~Le~el~~l~~~~~~~~~~~~~lq~~~~--~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~k~~~~l~~l~~~v~~l 147 (256)
T PF14932_consen 70 LEALEEELEALQEYKELYEQLRNKLQQLDS--SLSQELSELEGKEEEAQKKLKKAQKELSAECSKLNNELNQLLGEVSKL 147 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 478
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=42.10 E-value=3.3e+02 Score=26.27 Aligned_cols=88 Identities=16% Similarity=0.213 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 162 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVS 241 (465)
Q Consensus 162 e~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~ 241 (465)
+.+.+....++.|-..-..+|..+|+...+-+. .|+.+...|+..|...=.....+..+...+.+....+.......
T Consensus 60 ee~~~~r~~~E~E~~~~~~el~~~E~rl~~rE~---~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~~~~~~~ 136 (201)
T PF12072_consen 60 EEAQKLRQELERELKERRKELQRLEKRLQQREE---QLDRRLEQLEKREEELEKKEEELEQRKEELEEREEELEELIEEQ 136 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhcc
Q 012379 242 QAHLELLKRTN 252 (465)
Q Consensus 242 ~~~LdkL~ktN 252 (465)
...|++.....
T Consensus 137 ~~~Le~iAglT 147 (201)
T PF12072_consen 137 QQELEEIAGLT 147 (201)
T ss_pred HHHHHHHhCCC
No 479
>PF15294 Leu_zip: Leucine zipper
Probab=41.96 E-value=4.2e+02 Score=27.48 Aligned_cols=28 Identities=32% Similarity=0.493 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 012379 128 DKLDKEVDDVTRDIEAYEACLQRLEGEA 155 (465)
Q Consensus 128 e~L~~qle~~~~E~d~Y~~fL~~L~~~~ 155 (465)
.-|.++++.+..|.+.-..-|+.+++..
T Consensus 128 ~ll~kEi~rLq~EN~kLk~rl~~le~~a 155 (278)
T PF15294_consen 128 ELLNKEIDRLQEENEKLKERLKSLEKQA 155 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3366777777777777777777776553
No 480
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=41.96 E-value=2e+02 Score=23.72 Aligned_cols=21 Identities=48% Similarity=0.572 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 012379 178 LEAAIEETEKQNAEVNAELKE 198 (465)
Q Consensus 178 L~~eL~~LE~e~~~l~~el~~ 198 (465)
|.+.+.++|++...+...+..
T Consensus 38 Lr~~~~e~e~~~~~l~~~~~~ 58 (74)
T PF12329_consen 38 LRAKIKELEKQIKELKKKLEE 58 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 481
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.44 E-value=5.4e+02 Score=28.65 Aligned_cols=136 Identities=18% Similarity=0.170 Sum_probs=0.0
Q ss_pred CcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 111 QTQVEQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNA 190 (465)
Q Consensus 111 ~s~iDhPLC~eC~d~Lle~L~~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~ 190 (465)
+..++-|.-.+|-. ++.+..+++..+.=...|..-+-.++.-......-.+...|++++..-..++...|..=+...+
T Consensus 219 ~p~~~~passe~ee--~eel~eq~eeneel~ae~kqh~v~~~ales~~sq~~e~~selE~llklkerl~e~l~dgeayLa 296 (521)
T KOG1937|consen 219 KPIFAKPASSEEEE--VEELTEQNEENEELQAEYKQHLVEYKALESKRSQFEEQNSELEKLLKLKERLIEALDDGEAYLA 296 (521)
T ss_pred ccccCCCccccchh--HHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhHHHHHHhcCChHhHHH
Q ss_pred HHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 191 EVNAELKELELKSKRF------------------------KELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLE 246 (465)
Q Consensus 191 ~l~~el~~le~e~~~L------------------------~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld 246 (465)
.|...+..+..+...| .+.|..-.+....++..+....++..+-+.-+....+.|+
T Consensus 297 KL~~~l~~~~~~~~~ltqqwed~R~pll~kkl~Lr~~l~~~e~e~~e~~~IqeleqdL~a~~eei~~~eel~~~Lrsele 376 (521)
T KOG1937|consen 297 KLMGKLAELNKQMEELTQQWEDTRQPLLQKKLQLREELKNLETEDEEIRRIQELEQDLEAVDEEIESNEELAEKLRSELE 376 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Q ss_pred HH
Q 012379 247 LL 248 (465)
Q Consensus 247 kL 248 (465)
+|
T Consensus 377 ~l 378 (521)
T KOG1937|consen 377 KL 378 (521)
T ss_pred cC
No 482
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=41.27 E-value=4.9e+02 Score=29.36 Aligned_cols=96 Identities=15% Similarity=0.274 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 123 MRVLSDKLDKEVDDV--TRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 200 (465)
Q Consensus 123 ~d~Lle~L~~qle~~--~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le 200 (465)
....-+..++.++++ ..+.+.|+.-++.|+.... -+..++.+-++++++-..+..+....++.-..++..+...++
T Consensus 173 ~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~~i--k~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~ 250 (555)
T TIGR03545 173 LKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKKKDI--KNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLK 250 (555)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhccC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhHH
Q 012379 201 LKSKRFKELEERYWQEFNNF 220 (465)
Q Consensus 201 ~e~~~L~~~E~~~w~e~n~~ 220 (465)
....+++..=++=|..+..+
T Consensus 251 ~~~~~lk~ap~~D~~~L~~~ 270 (555)
T TIGR03545 251 ADLAELKKAPQNDLKRLENK 270 (555)
T ss_pred HHHHHHHhccHhHHHHHHHH
No 483
>PF12018 DUF3508: Domain of unknown function (DUF3508); InterPro: IPR021897 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 280 amino acids in length. This domain has two conserved sequence motifs: GFC and GLL. This family is also known as UPF0704.
Probab=41.26 E-value=4e+02 Score=27.10 Aligned_cols=84 Identities=17% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--hcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 125 VLSDKLDKEVDDVTRDIEAYEACLQRL--EGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 202 (465)
Q Consensus 125 ~Lle~L~~qle~~~~E~d~Y~~fL~~L--~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e 202 (465)
.+.+.++.+++.+..-+..|...|..+ ...........-+.+++-.+.+=+.=|+.-+++++.=.+.++..+.+++..
T Consensus 9 ~t~~~i~~eL~~~~~l~~~yta~l~~~~~~~~~~~~~~~~~lke~L~n~RQ~e~fLr~ll~dl~~~~~~V~~l~~~~~~~ 88 (281)
T PF12018_consen 9 ATTEHIDTELEEAQELCYRYTAVLEKQSQSPQMESELPPELLKEELYNRRQYEIFLRILLSDLITCAQRVEELIKRFEAQ 88 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH
Q 012379 203 SKRFKE 208 (465)
Q Consensus 203 ~~~L~~ 208 (465)
..+|.+
T Consensus 89 l~~L~~ 94 (281)
T PF12018_consen 89 LEKLKE 94 (281)
T ss_pred HHHHHH
No 484
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=41.20 E-value=4.8e+02 Score=28.00 Aligned_cols=131 Identities=12% Similarity=0.119 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 123 MRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADF-----LKEKLKIEEEERKLEAAIEETEKQNAEVNAELK 197 (465)
Q Consensus 123 ~d~Lle~L~~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l-----~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~ 197 (465)
.+.-+..+..++.....+...=..-+..+............+ ..-+..|.++...+..++.++..+......++.
T Consensus 237 ~~~~~~~ln~ql~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~s~~i~~Lr~~~~~~~~~~~~l~~~~~~~~p~~~ 316 (458)
T COG3206 237 SEQQLSALNTQLQSARARLAQAEARLASLLQLLPLGREAAALREVLESPTIQDLRQQYAQVRQQIADLSTELGAKHPQLV 316 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHhccHHHHHHHHHHHHHHHHHHHHHHhhcccChHHH
Q ss_pred HHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 012379 198 ELELKSKRFKELEE-RYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNV 253 (465)
Q Consensus 198 ~le~e~~~L~~~E~-~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~LdkL~ktNV 253 (465)
.++.+...++.... +.++-...+..++...+....++..++...+.++..+-++.+
T Consensus 317 ~~~~q~~~~~~~~~~e~~~~~~~~~~~~~~l~~~~~~L~~~~~~l~~~~~~~~~~~~ 373 (458)
T COG3206 317 ALEAQLAELRQQIAAELRQILASLPNELALLEQQEAALEKELAQLKGRLSKLPKLQV 373 (458)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHhhchHhhh
No 485
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=41.16 E-value=54 Score=29.43 Aligned_cols=87 Identities=16% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHH----HHHHHHHHHHH
Q 012379 175 ERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIA--HQEERDAISSK----IEVSQAHLELL 248 (465)
Q Consensus 175 E~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~--~~~e~~sl~~q----~~~~~~~LdkL 248 (465)
..++-..+..+|.+.-.+-+|+..+++.+..+-++....--+-..+...|.+ +.+.--.-+.. ...-..+|.+|
T Consensus 3 KkeiFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~~~~e~~~~~k~~~~~~~~~~~~dnL~~l 82 (114)
T COG4467 3 KKEIFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGEPTLEKTAVKKEKPAVKKKGEGYDNLARL 82 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCCccccchhhhcccccccccCCCchhHHHH
Q ss_pred hhcccCCCceeeeecCCee
Q 012379 249 KRTNVLNDAFPIWHDGEFG 267 (465)
Q Consensus 249 ~ktNV~Nd~F~I~hdG~fG 267 (465)
|++-|||-+ -+||
T Consensus 83 -----Y~EGFHICn-~hyG 95 (114)
T COG4467 83 -----YQEGFHICN-VHYG 95 (114)
T ss_pred -----HhccchhHH-HHhc
No 486
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=41.01 E-value=6e+02 Score=29.04 Aligned_cols=129 Identities=12% Similarity=0.141 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 122 CMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEK-LKIEEEERKLEAAIEETEKQNAEVNAELKELE 200 (465)
Q Consensus 122 C~d~Lle~L~~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~-~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le 200 (465)
|.-.....+++.....+.+.+.|..-+.+|.++..+--.+-+-...+ .+|+.+..+-.+-+...-++.+.+..++.+++
T Consensus 397 ~~~~~~~~i~~~~~~~~~~~~~~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~qee~~s~~~~~~e~~q~e~~~~Q 476 (607)
T KOG0240|consen 397 ILSEEEMSITKLKGSLEEEEDILTERIESLYQQLDQKDDQINKQSQLMEKLKEQLLDQEELLSSTRRLYEDIQQELSEIQ 476 (607)
T ss_pred hhhhhhhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012379 201 LKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTN 252 (465)
Q Consensus 201 ~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~LdkL~ktN 252 (465)
.+.+.-+++..+....++.+.-......++.++-..+. ....|..|++-+
T Consensus 477 ~~~e~~~~e~~e~~~al~el~~~~~~~~~~~~~~~~~n--~~sel~sl~~~~ 526 (607)
T KOG0240|consen 477 EENEAAKDEVKEVLTALEELAVNYDQKSEEKESKLSQN--LKSELQSLQEPS 526 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhhhhh--hHHHHHhhhhcc
No 487
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=40.99 E-value=1.4e+02 Score=30.25 Aligned_cols=51 Identities=8% Similarity=0.213 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 012379 171 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQ 221 (465)
Q Consensus 171 Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q 221 (465)
+-.+.++.++...+||.|..+..+++..|+.|.+.|+...-+......-+|
T Consensus 84 VtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylq 134 (248)
T PF08172_consen 84 VTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQ 134 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 488
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=40.85 E-value=4.4e+02 Score=27.48 Aligned_cols=82 Identities=13% Similarity=0.146 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 168 KLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLEL 247 (465)
Q Consensus 168 ~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ldk 247 (465)
+..|..+..+++...+.+.-..++|+.|-..|.=+..-|++.=+..=..+..+++++.+...++..++..+...+.+++-
T Consensus 79 ~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~ 158 (302)
T PF09738_consen 79 LRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDE 158 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred Hh
Q 012379 248 LK 249 (465)
Q Consensus 248 L~ 249 (465)
|+
T Consensus 159 Lr 160 (302)
T PF09738_consen 159 LR 160 (302)
T ss_pred HH
No 489
>KOG3501 consensus Molecular chaperone Prefoldin, subunit 1 [Posttranslational modification, protein turnover, chaperones]
Probab=40.81 E-value=2.7e+02 Score=25.02 Aligned_cols=80 Identities=16% Similarity=0.231 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 123 MRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 202 (465)
Q Consensus 123 ~d~Lle~L~~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e 202 (465)
+...++.-++++.++-.|...|...-+..-.+.. ......++++-+.+++.|+.|++...=++....+.|..
T Consensus 32 ~kk~~~l~~ke~~~~~de~~~Y~svgrmF~l~dk--------~a~~s~leak~k~see~IeaLqkkK~YlEk~v~eaE~n 103 (114)
T KOG3501|consen 32 AKKISELAKKELEDVGDEKAVYTSVGRMFMLSDK--------AAVRSHLEAKMKSSEEKIEALQKKKTYLEKTVSEAEQN 103 (114)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCcH--------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHH
Q 012379 203 SKRFKELE 210 (465)
Q Consensus 203 ~~~L~~~E 210 (465)
+.++-+.+
T Consensus 104 Lrellqs~ 111 (114)
T KOG3501|consen 104 LRELLQSR 111 (114)
T ss_pred HHHHHHhh
No 490
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=40.62 E-value=7.5e+02 Score=30.03 Aligned_cols=125 Identities=15% Similarity=0.128 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 123 MRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 202 (465)
Q Consensus 123 ~d~Lle~L~~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e 202 (465)
+..|++.-..+++....-++.|..-.=.+-.+-........+.+-+..+|.|-+++.+.+.....|....++-++.--+.
T Consensus 1039 ~~el~~~~~~~~~~e~e~k~~hl~~~~~~l~kl~~eaq~~Q~k~LK~~~e~e~kElk~~l~kkr~e~ik~~~~~kdK~e~ 1118 (1189)
T KOG1265|consen 1039 TQELLEMRREQYEEEFELKEEHLKEQISLLRKLLSEAQTNQTKALKESLEKETKELKKKLDKKRMEDIKVDKVIKDKAER 1118 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccHHHH
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 012379 203 SKRFKELEERYWQEFNNFQFQLIAHQEERD-AISSKIEVSQAHLEL 247 (465)
Q Consensus 203 ~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~-sl~~q~~~~~~~Ldk 247 (465)
.....+....+.+++=.-..+|.+-++.+. .|..+-....+||+.
T Consensus 1119 er~~rE~n~s~i~~~V~e~krL~~~~~k~~e~L~k~~~~~leql~e 1164 (1189)
T KOG1265|consen 1119 ERRKRELNSSNIKEFVEERKRLAEKQSKRQEQLVKKHLEVLEQLAE 1164 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 491
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=40.30 E-value=1.4e+02 Score=31.69 Aligned_cols=64 Identities=8% Similarity=0.071 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 012379 181 AIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLND 256 (465)
Q Consensus 181 eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~LdkL~ktNV~Nd 256 (465)
|.-.|.+|.+.|.+|..+|..|..+|+.+ +......+...-++.+++.+..-+++.|+.+.|+.
T Consensus 33 e~~aLr~EN~~LKkEN~~Lk~eVerLE~e------------~l~s~V~E~vet~dv~~d~i~Kimnk~Re~vlfq~ 96 (420)
T PF07407_consen 33 ENFALRMENHSLKKENNDLKIEVERLENE------------MLRSHVCEDVETNDVIYDKIVKIMNKMRELVLFQR 96 (420)
T ss_pred hhhhHHHHhHHHHHHHHHHHHHHHHHHHH------------hhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhcc
No 492
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=40.17 E-value=1.8e+02 Score=32.73 Aligned_cols=109 Identities=13% Similarity=0.240 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 119 CLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKE 198 (465)
Q Consensus 119 C~eC~d~Lle~L~~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~ 198 (465)
|.+-+....-+|+.=++.-..+.|.|-.+.++.-+.. .+.|..+-.+.. .+
T Consensus 8 ~e~~~~~~~~~~~~~Y~~~l~q~d~yn~~f~~F~~S~-----------------------ke~I~~m~~~~~------~~ 58 (574)
T PF07462_consen 8 SEDEPEADDFEMENIYEKHLSQIDKYNDYFKKFLESK-----------------------KELINKMTEEKW------NA 58 (574)
T ss_pred CCCCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHH-----------------------HHHHhcCCHHHH------HH
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hhcccCCCceee
Q 012379 199 LELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELL--------KRTNVLNDAFPI 260 (465)
Q Consensus 199 le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~LdkL--------~ktNV~Nd~F~I 260 (465)
|..|++.|++.-+-+...|+.+++.|.+|-... +++.....|+.+| ||.|.+|-.|++
T Consensus 59 L~~eI~~LK~~~q~s~d~y~kYKLKLeR~~~Kk----~ki~~sk~~ik~lt~lK~~L~~r~n~lN~p~~v 124 (574)
T PF07462_consen 59 LGEEIEELKKKIQVSLDHYGKYKLKLERLLKKK----NKISNSKEQIKKLTILKNKLERRQNLLNNPTSV 124 (574)
T ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHH
No 493
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=40.15 E-value=2.1e+02 Score=23.60 Aligned_cols=56 Identities=14% Similarity=0.302 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012379 196 LKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRT 251 (465)
Q Consensus 196 l~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~LdkL~kt 251 (465)
+.+++.=........+..=..|++++..+.....+...|.++......+++.|...
T Consensus 9 l~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~q 64 (70)
T PF04899_consen 9 LSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQ 64 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
No 494
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=40.07 E-value=2.5e+02 Score=24.39 Aligned_cols=84 Identities=14% Similarity=0.168 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHhHHHHHHHHHHHHH
Q 012379 167 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKEL---------------EERYWQEFNNFQFQLIAHQEER 231 (465)
Q Consensus 167 e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~---------------E~~~w~e~n~~q~ql~~~~~e~ 231 (465)
+++.+-.+-..+.+++..+..+...++.++.+.+.-.++|+.+ +...=....++...+...+...
T Consensus 4 ~~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i 83 (110)
T TIGR02338 4 QVQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLELRV 83 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 012379 232 DAISSKIEVSQAHLELLKR 250 (465)
Q Consensus 232 ~sl~~q~~~~~~~LdkL~k 250 (465)
..++.+..+...++..+++
T Consensus 84 ~~lek~~~~l~~~l~e~q~ 102 (110)
T TIGR02338 84 KTLQRQEERLREQLKELQE 102 (110)
T ss_pred HHHHHHHHHHHHHHHHHHH
No 495
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=40.00 E-value=1.5e+02 Score=31.98 Aligned_cols=62 Identities=19% Similarity=0.265 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 012379 163 DFLKEKLKIEEEERKLEAAIEETEKQ----NAEVNAELKELELKSKRFKELEERYWQEFNNFQFQL 224 (465)
Q Consensus 163 ~l~~e~~~Le~EE~~L~~eL~~LE~e----~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql 224 (465)
++..+++.|..|...+-+++..+.+. .+++.++.+++.++++.++++.+....+++..-..+
T Consensus 41 ~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 106 (418)
T TIGR00414 41 KLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSI 106 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
No 496
>PF11488 Lge1: Transcriptional regulatory protein LGE1
Probab=39.71 E-value=2.2e+02 Score=23.64 Aligned_cols=59 Identities=22% Similarity=0.442 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 186 EKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELL 248 (465)
Q Consensus 186 E~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~LdkL 248 (465)
+.+..++..-.+++...-+++++...++|+.. ....+..-+.+++.+.-|+. +..|+-|
T Consensus 19 ~~~~~~l~~~~~ei~~~d~~le~l~~q~~k~~--~~~~~L~~~~~r~~l~vQlt--~EkLdel 77 (80)
T PF11488_consen 19 ETTQSKLESRFKEIDSKDKELEELYQQDCKTE--MEVKMLETQDPRDELNVQLT--QEKLDEL 77 (80)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhchhhHHhHHHH--HHhHHHH
No 497
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=39.55 E-value=2.3e+02 Score=23.77 Aligned_cols=84 Identities=15% Similarity=0.281 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 012379 162 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKEL-ELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEV 240 (465)
Q Consensus 162 e~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~l-e~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~ 240 (465)
..+......++.....+...+..++.+.+.+..+|... +.=...|++.|+....+......+... .+..++..
T Consensus 10 ~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~------~l~~q~~~ 83 (127)
T smart00502 10 TKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLK------VLEQQLES 83 (127)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH
Q ss_pred HHHHHHHHhhc
Q 012379 241 SQAHLELLKRT 251 (465)
Q Consensus 241 ~~~~LdkL~kt 251 (465)
...+++.|+.+
T Consensus 84 l~~~l~~l~~~ 94 (127)
T smart00502 84 LTQKQEKLSHA 94 (127)
T ss_pred HHHHHHHHHHH
No 498
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=39.13 E-value=69 Score=28.09 Aligned_cols=32 Identities=16% Similarity=0.265 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 176 RKLEAAIEETEKQNAEVNAELKELELKSKRFK 207 (465)
Q Consensus 176 ~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~ 207 (465)
.++.+++.+++++.+++.++-.+|+.+...|+
T Consensus 30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 499
>PRK14148 heat shock protein GrpE; Provisional
Probab=39.08 E-value=3.8e+02 Score=26.22 Aligned_cols=83 Identities=11% Similarity=0.194 Sum_probs=0.0
Q ss_pred hcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 012379 152 EGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEER 231 (465)
Q Consensus 152 ~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~ 231 (465)
+.+......+.....+...++++...|.++++++.....++.++..-+.... ..+.++........|-..+....|.+
T Consensus 26 ~~~~~~~~e~~~~~~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~--~rE~e~~~~~a~~~~~~~LLpV~Dnl 103 (195)
T PRK14148 26 QESASGALEELSVEEQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRA--ERDVSNARKFGIEKFAKELLPVIDSI 103 (195)
T ss_pred chhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhHHhHH
Q ss_pred HHHHH
Q 012379 232 DAISS 236 (465)
Q Consensus 232 ~sl~~ 236 (465)
+-...
T Consensus 104 erAl~ 108 (195)
T PRK14148 104 EQALK 108 (195)
T ss_pred HHHHh
No 500
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=38.94 E-value=68 Score=27.26 Aligned_cols=35 Identities=26% Similarity=0.365 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 173 EEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 207 (465)
Q Consensus 173 ~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~ 207 (465)
.+..+|.++|+.++.+.+.+..++..++.+.+-|+
T Consensus 70 ~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~L~ 104 (104)
T PF13600_consen 70 PELKELEEELEALEDELAALQDEIQALEAQIAFLQ 104 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Done!