Query 012379
Match_columns 465
No_of_seqs 154 out of 248
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 08:18:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012379.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012379hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ddp_A Beclin-1; ECD, autophag 100.0 4.1E-80 1.4E-84 588.1 16.2 192 226-426 2-206 (210)
2 3vp7_A Vacuolar protein sortin 100.0 1.1E-73 3.7E-78 546.9 14.5 175 251-426 1-217 (220)
3 3q8t_A Beclin-1; autophagy, AT 99.7 8.3E-17 2.8E-21 136.6 15.1 90 162-251 7-96 (96)
4 2p1l_B Beclin 1; apoptosis, au 98.4 7.5E-08 2.6E-12 65.9 1.4 27 91-117 5-31 (31)
5 1c1g_A Tropomyosin; contractIl 96.4 0.27 9.1E-06 44.7 18.4 20 130-149 4-23 (284)
6 2v71_A Nuclear distribution pr 96.3 0.5 1.7E-05 44.4 19.6 60 125-193 17-76 (189)
7 1c1g_A Tropomyosin; contractIl 96.0 0.73 2.5E-05 41.7 19.1 14 132-145 27-40 (284)
8 2efr_A General control protein 95.8 1.1 3.8E-05 40.8 19.6 82 169-250 73-154 (155)
9 3q8t_A Beclin-1; autophagy, AT 95.7 0.45 1.5E-05 39.9 15.0 80 141-226 6-85 (96)
10 3oja_B Anopheles plasmodium-re 95.6 0.15 5.1E-06 53.6 14.1 29 169-197 512-540 (597)
11 3oja_B Anopheles plasmodium-re 95.2 0.3 1E-05 51.3 14.8 55 196-250 511-565 (597)
12 3na7_A HP0958; flagellar bioge 95.1 1.2 4.2E-05 42.8 17.9 11 315-325 222-232 (256)
13 3na7_A HP0958; flagellar bioge 95.1 1.6 5.5E-05 41.9 18.7 37 164-200 95-131 (256)
14 2dfs_A Myosin-5A; myosin-V, in 94.8 0.19 6.5E-06 58.0 13.1 29 178-206 982-1010(1080)
15 3o0z_A RHO-associated protein 94.5 3 0.0001 38.5 17.7 44 192-235 95-138 (168)
16 2v71_A Nuclear distribution pr 94.4 2.7 9.1E-05 39.5 17.4 111 136-249 7-125 (189)
17 3hnw_A Uncharacterized protein 94.2 0.6 2.1E-05 41.6 12.2 69 163-231 65-133 (138)
18 3vkg_A Dynein heavy chain, cyt 94.2 0.9 3.1E-05 57.9 17.8 68 178-245 2012-2079(3245)
19 2efr_A General control protein 93.4 4.5 0.00016 36.8 17.5 32 215-246 98-129 (155)
20 3vkg_A Dynein heavy chain, cyt 90.8 3.4 0.00012 52.8 16.4 33 121-153 1899-1931(3245)
21 1l8d_A DNA double-strand break 90.2 6.9 0.00024 32.5 13.1 33 214-246 70-102 (112)
22 3bas_A Myosin heavy chain, str 90.1 6.2 0.00021 32.3 12.4 68 167-248 15-82 (89)
23 2v4h_A NF-kappa-B essential mo 90.0 5.7 0.00019 34.3 12.3 23 226-248 87-109 (110)
24 3oja_A Leucine-rich immune mol 89.5 6.6 0.00023 40.3 15.0 13 136-148 364-376 (487)
25 3s4r_A Vimentin; alpha-helix, 88.9 9 0.00031 31.7 13.1 69 180-250 23-91 (93)
26 3a7p_A Autophagy protein 16; c 88.7 3 0.0001 37.9 10.2 23 181-203 69-91 (152)
27 3a7p_A Autophagy protein 16; c 88.6 7.7 0.00026 35.2 12.8 65 165-236 67-131 (152)
28 1ic2_A Tropomyosin alpha chain 88.4 8.5 0.00029 30.8 12.7 36 215-250 41-76 (81)
29 3oja_A Leucine-rich immune mol 87.7 11 0.00038 38.6 15.2 39 188-226 429-467 (487)
30 1deq_A Fibrinogen (alpha chain 87.7 14 0.00048 38.1 15.5 41 238-285 181-222 (390)
31 3hnw_A Uncharacterized protein 86.8 8.2 0.00028 34.2 11.8 39 171-209 66-104 (138)
32 3bas_A Myosin heavy chain, str 85.7 13 0.00045 30.3 12.3 36 167-202 22-57 (89)
33 3nmd_A CGMP dependent protein 83.5 3.7 0.00013 33.0 7.1 44 163-206 23-66 (72)
34 3u1c_A Tropomyosin alpha-1 cha 83.4 19 0.00064 30.1 14.6 24 127-150 4-27 (101)
35 2zqm_A Prefoldin beta subunit 83.0 8.1 0.00028 32.1 9.6 39 166-204 70-108 (117)
36 2jee_A YIIU; FTSZ, septum, coi 82.2 18 0.00061 29.6 10.8 19 181-199 28-46 (81)
37 3u59_A Tropomyosin beta chain; 82.0 21 0.00071 29.7 14.6 18 128-145 5-22 (101)
38 2v66_B Nuclear distribution pr 82.0 24 0.00082 30.4 14.9 85 128-217 6-90 (111)
39 3s9g_A Protein hexim1; cyclin 82.0 23 0.00077 30.1 11.7 62 143-209 18-80 (104)
40 3iox_A AGI/II, PA; alpha helix 81.5 21 0.00071 37.9 13.9 94 138-236 8-101 (497)
41 1l8d_A DNA double-strand break 81.4 21 0.00072 29.5 11.6 35 169-203 67-101 (112)
42 1ic2_A Tropomyosin alpha chain 80.8 16 0.00055 29.2 10.1 19 130-148 4-22 (81)
43 3mq9_A Bone marrow stromal ant 80.2 54 0.0018 33.3 16.6 69 178-250 402-471 (471)
44 3ghg_A Fibrinogen alpha chain; 80.0 11 0.00036 40.5 11.0 46 215-263 131-176 (562)
45 3uux_B Mitochondrial division 79.6 18 0.00061 35.1 11.6 73 170-242 153-225 (242)
46 3mq9_A Bone marrow stromal ant 79.3 16 0.00054 37.3 12.1 26 180-205 443-468 (471)
47 3ghg_A Fibrinogen alpha chain; 78.9 48 0.0016 35.6 15.6 19 237-255 177-195 (562)
48 3tnu_B Keratin, type II cytosk 78.8 30 0.001 29.8 12.1 34 167-200 37-70 (129)
49 3ol1_A Vimentin; structural ge 78.6 31 0.0011 29.6 13.8 30 123-152 18-47 (119)
50 3swk_A Vimentin; cytoskeleton, 78.0 27 0.00091 28.5 12.7 36 216-251 50-85 (86)
51 1ci6_A Transcription factor AT 77.3 8.2 0.00028 29.7 7.1 39 170-208 20-58 (63)
52 3tnu_A Keratin, type I cytoske 76.9 27 0.00093 30.2 11.2 27 172-198 44-70 (131)
53 1fxk_A Prefoldin; archaeal pro 76.1 12 0.00042 30.5 8.4 37 167-203 66-102 (107)
54 2w83_C C-JUN-amino-terminal ki 75.4 23 0.0008 28.6 9.4 42 162-203 33-74 (77)
55 3opc_A Uncharacterized protein 74.9 42 0.0014 29.2 12.6 109 136-250 12-131 (154)
56 3iv1_A Tumor susceptibility ge 74.5 29 0.00099 28.2 9.8 31 176-206 42-72 (78)
57 2p22_A Suppressor protein STP2 74.2 39 0.0013 31.2 11.9 79 164-242 47-135 (174)
58 3ajw_A Flagellar FLIJ protein; 73.7 41 0.0014 28.6 13.2 56 167-222 75-130 (150)
59 3cvf_A Homer-3, homer protein 73.6 28 0.00095 28.3 9.5 24 178-201 11-34 (79)
60 3u1c_A Tropomyosin alpha-1 cha 73.4 39 0.0013 28.1 15.0 49 178-226 28-76 (101)
61 2ve7_A Kinetochore protein HEC 72.9 11 0.00038 37.4 8.7 25 179-203 184-208 (315)
62 1wt6_A Myotonin-protein kinase 72.9 14 0.00048 30.2 7.6 41 166-206 31-71 (81)
63 2ocy_A RAB guanine nucleotide 72.6 56 0.0019 29.6 17.6 32 219-250 112-143 (154)
64 3ol1_A Vimentin; structural ge 71.2 48 0.0017 28.3 16.1 9 144-152 18-26 (119)
65 2i1j_A Moesin; FERM, coiled-co 71.2 1.7 5.8E-05 46.8 2.4 6 128-133 303-308 (575)
66 2lw1_A ABC transporter ATP-bin 70.4 28 0.00097 28.1 9.1 23 166-188 22-44 (89)
67 1m1j_C Fibrinogen gamma chain; 70.2 61 0.0021 33.5 13.7 24 128-151 44-67 (409)
68 2b5u_A Colicin E3; high resolu 70.1 58 0.002 34.8 13.4 26 181-206 315-340 (551)
69 3cvf_A Homer-3, homer protein 70.1 40 0.0014 27.4 9.7 44 166-209 13-56 (79)
70 3o0z_A RHO-associated protein 69.3 70 0.0024 29.4 18.5 67 129-201 10-76 (168)
71 3u59_A Tropomyosin beta chain; 69.1 48 0.0016 27.4 15.3 49 178-226 28-76 (101)
72 3mq7_A Bone marrow stromal ant 68.9 58 0.002 28.3 13.2 13 137-149 19-31 (121)
73 2v4h_A NF-kappa-B essential mo 68.5 57 0.002 28.1 12.7 70 179-252 37-106 (110)
74 2oto_A M protein; helical coil 68.1 64 0.0022 28.5 14.2 59 128-192 25-83 (155)
75 2avr_X Adhesion A; antiparalle 68.1 29 0.001 30.2 9.1 18 229-246 71-88 (119)
76 3viq_B Mating-type switching p 67.9 16 0.00054 30.2 6.9 44 178-221 6-54 (85)
77 1hjb_A Ccaat/enhancer binding 67.6 26 0.00088 28.9 8.3 38 171-208 34-71 (87)
78 2i1j_A Moesin; FERM, coiled-co 66.2 4.8 0.00016 43.3 4.6 19 135-153 331-349 (575)
79 2v66_B Nuclear distribution pr 66.1 64 0.0022 27.7 12.7 32 122-153 32-63 (111)
80 4dk0_A Putative MACA; alpha-ha 65.7 32 0.0011 33.5 10.1 30 221-250 121-150 (369)
81 3fpp_A Macrolide-specific effl 65.4 26 0.00088 33.9 9.3 28 222-249 121-148 (341)
82 3cve_A Homer protein homolog 1 64.9 52 0.0018 26.3 11.1 39 168-206 9-47 (72)
83 4etp_A Kinesin-like protein KA 64.5 19 0.00065 37.0 8.5 12 282-293 120-131 (403)
84 1t2k_D Cyclic-AMP-dependent tr 63.8 21 0.00071 27.0 6.6 35 173-207 22-56 (61)
85 2fup_A Hypothetical protein PA 63.8 30 0.001 29.8 8.6 114 136-252 11-134 (157)
86 1wle_A Seryl-tRNA synthetase; 63.3 41 0.0014 35.6 11.0 37 166-202 70-106 (501)
87 3hhm_B NISH2 P85alpha; PI3KCA, 62.4 68 0.0023 32.6 12.1 60 167-233 199-258 (373)
88 3ibp_A Chromosome partition pr 61.2 74 0.0025 31.7 11.6 74 126-199 25-102 (302)
89 1f5n_A Interferon-induced guan 60.7 1.8E+02 0.0063 31.2 17.9 17 235-251 566-582 (592)
90 3mq7_A Bone marrow stromal ant 59.7 88 0.003 27.2 13.5 29 179-207 70-98 (121)
91 2dq0_A Seryl-tRNA synthetase; 59.6 37 0.0013 35.4 9.8 90 164-262 29-118 (455)
92 3u06_A Protein claret segregat 59.1 24 0.00083 36.4 8.2 30 171-200 8-37 (412)
93 3ljm_A Coil Ser L9C; de novo d 58.7 13 0.00046 24.5 3.9 26 182-207 3-28 (31)
94 2l5g_B Putative uncharacterize 58.6 19 0.00064 26.1 5.0 29 178-206 7-35 (42)
95 3lss_A Seryl-tRNA synthetase; 58.1 66 0.0023 34.0 11.4 37 165-201 36-72 (484)
96 2wt7_A Proto-oncogene protein 57.8 30 0.001 26.4 6.6 33 175-207 25-57 (63)
97 3etw_A Adhesin A; antiparallel 57.6 59 0.002 28.3 9.1 14 233-246 75-88 (119)
98 1gu4_A CAAT/enhancer binding p 57.0 37 0.0013 27.3 7.2 38 170-207 33-70 (78)
99 3nmd_A CGMP dependent protein 56.7 44 0.0015 26.7 7.4 8 242-249 60-67 (72)
100 4e61_A Protein BIM1; EB1-like 56.4 95 0.0032 26.5 11.1 44 179-222 10-53 (106)
101 1ik9_A DNA repair protein XRCC 55.8 76 0.0026 29.9 10.4 6 119-124 130-135 (213)
102 1go4_E MAD1 (mitotic arrest de 55.7 54 0.0018 27.7 8.3 35 115-153 6-40 (100)
103 2e7s_A RAB guanine nucleotide 55.0 65 0.0022 28.6 9.0 12 238-249 119-130 (135)
104 1fxk_C Protein (prefoldin); ar 54.6 99 0.0034 26.2 10.3 82 125-206 15-128 (133)
105 2pms_C Pneumococcal surface pr 54.5 82 0.0028 27.6 9.5 112 129-248 10-122 (125)
106 2wt7_B Transcription factor MA 54.2 28 0.00097 28.9 6.2 12 227-238 74-85 (90)
107 4etp_A Kinesin-like protein KA 53.6 43 0.0015 34.3 9.0 23 180-202 10-32 (403)
108 3jsv_C NF-kappa-B essential mo 53.4 99 0.0034 25.9 10.0 23 227-249 66-88 (94)
109 2ocy_A RAB guanine nucleotide 53.1 1.3E+02 0.0045 27.2 16.1 20 220-239 120-139 (154)
110 2yy0_A C-MYC-binding protein; 52.9 13 0.00046 27.8 3.7 28 169-196 22-49 (53)
111 3qne_A Seryl-tRNA synthetase, 52.7 59 0.002 34.4 9.9 88 165-263 32-121 (485)
112 4dzn_A Coiled-coil peptide CC- 52.2 30 0.001 23.1 4.8 22 185-206 7-28 (33)
113 3iox_A AGI/II, PA; alpha helix 51.4 2.2E+02 0.0076 30.2 13.9 29 125-153 9-41 (497)
114 2aze_B Transcription factor E2 51.1 29 0.00098 29.4 6.0 34 175-208 8-41 (106)
115 1go4_E MAD1 (mitotic arrest de 50.9 27 0.00093 29.5 5.7 32 174-205 13-44 (100)
116 2oto_A M protein; helical coil 50.4 1.3E+02 0.0045 26.4 18.7 21 130-150 34-54 (155)
117 3ra3_B P2F; coiled coil domain 50.2 13 0.00045 24.0 2.8 23 184-206 4-26 (28)
118 3qh9_A Liprin-beta-2; coiled-c 49.4 1.1E+02 0.0036 25.0 10.8 38 170-207 23-60 (81)
119 1jnm_A Proto-oncogene C-JUN; B 48.7 22 0.00075 27.0 4.4 34 173-206 22-55 (62)
120 1yke_B RNA polymerase II holoe 48.2 1.2E+02 0.0042 27.0 10.0 32 160-191 86-117 (151)
121 3i00_A HIP-I, huntingtin-inter 48.2 1.3E+02 0.0046 25.9 11.6 20 124-143 14-33 (120)
122 3fpp_A Macrolide-specific effl 47.9 81 0.0028 30.3 9.5 24 222-245 128-151 (341)
123 1ykh_B RNA polymerase II holoe 47.9 1.4E+02 0.0048 26.0 10.5 33 160-192 86-118 (132)
124 1ci6_A Transcription factor AT 47.5 55 0.0019 25.0 6.5 29 165-193 29-57 (63)
125 3qne_A Seryl-tRNA synthetase, 47.3 92 0.0032 32.9 10.4 27 347-385 310-336 (485)
126 1ses_A Seryl-tRNA synthetase; 47.0 1E+02 0.0035 31.6 10.6 27 347-385 289-315 (421)
127 2k48_A Nucleoprotein; viral pr 46.8 1.3E+02 0.0045 25.6 9.3 13 233-245 86-98 (107)
128 3u06_A Protein claret segregat 46.6 50 0.0017 34.0 8.1 33 175-207 5-37 (412)
129 3ghg_C Fibrinogen gamma chain; 46.3 2.2E+02 0.0074 29.6 12.7 25 127-151 40-67 (411)
130 1lwu_C Fibrinogen gamma chain; 46.1 58 0.002 32.7 8.3 14 281-294 127-140 (323)
131 1x79_B RAB GTPase binding effe 46.1 1.4E+02 0.0049 25.6 12.0 34 204-237 59-92 (112)
132 2dq0_A Seryl-tRNA synthetase; 45.8 1E+02 0.0035 32.0 10.4 28 347-386 314-341 (455)
133 1m1j_A Fibrinogen alpha subuni 45.3 3E+02 0.01 29.1 18.2 19 238-256 179-197 (491)
134 3tnu_B Keratin, type II cytosk 45.0 1.5E+02 0.005 25.4 13.0 29 172-200 35-63 (129)
135 3a2a_A Voltage-gated hydrogen 44.8 79 0.0027 24.1 6.7 35 167-201 12-46 (58)
136 3l4q_C Phosphatidylinositol 3- 44.8 1.9E+02 0.0064 26.5 12.2 54 173-233 96-149 (170)
137 1uix_A RHO-associated kinase; 44.5 1.2E+02 0.004 24.2 10.6 46 179-224 3-48 (71)
138 1ses_A Seryl-tRNA synthetase; 44.1 56 0.0019 33.6 8.0 86 165-261 27-112 (421)
139 1fxk_A Prefoldin; archaeal pro 43.6 1.3E+02 0.0043 24.3 10.6 20 229-248 79-98 (107)
140 1hjb_A Ccaat/enhancer binding 43.6 44 0.0015 27.5 5.8 36 163-198 40-75 (87)
141 4dk0_A Putative MACA; alpha-ha 43.3 97 0.0033 30.0 9.3 51 217-276 124-174 (369)
142 3iv1_A Tumor susceptibility ge 43.0 1.3E+02 0.0045 24.3 10.0 65 124-194 10-74 (78)
143 4emc_A Monopolin complex subun 42.8 1.9E+02 0.0066 27.0 10.6 36 169-204 23-58 (190)
144 3haj_A Human pacsin2 F-BAR; pa 42.7 3E+02 0.01 28.3 13.8 21 269-290 287-307 (486)
145 1a93_B MAX protein, coiled coi 42.1 38 0.0013 23.4 4.2 25 176-200 10-34 (34)
146 3cve_A Homer protein homolog 1 41.0 1.3E+02 0.0046 23.8 11.1 30 178-207 5-34 (72)
147 2v0o_A FCHO2, FCH domain only 40.8 2.2E+02 0.0075 26.2 18.1 24 128-151 129-152 (276)
148 1nlw_A MAD protein, MAX dimeri 40.6 34 0.0012 27.4 4.6 31 168-198 49-79 (80)
149 2lw1_A ABC transporter ATP-bin 40.3 1.1E+02 0.0039 24.4 7.8 7 134-140 24-30 (89)
150 3haj_A Human pacsin2 F-BAR; pa 40.0 3.3E+02 0.011 28.0 14.4 11 121-131 81-91 (486)
151 3efg_A Protein SLYX homolog; x 39.7 1.2E+02 0.0039 24.3 7.6 38 164-201 12-49 (78)
152 1f5n_A Interferon-induced guan 39.6 3.9E+02 0.013 28.7 19.3 18 227-244 565-582 (592)
153 1wle_A Seryl-tRNA synthetase; 39.2 93 0.0032 32.9 8.9 27 347-385 345-371 (501)
154 1nkp_A C-MYC, MYC proto-oncoge 38.7 42 0.0014 27.3 4.9 33 168-200 54-86 (88)
155 1t2k_D Cyclic-AMP-dependent tr 38.6 75 0.0026 23.8 6.0 23 170-192 33-55 (61)
156 2wt7_A Proto-oncogene protein 38.6 85 0.0029 23.8 6.4 22 170-191 34-55 (63)
157 1m1j_B Fibrinogen beta chain; 38.4 3.7E+02 0.013 28.2 17.6 27 127-153 88-114 (464)
158 1nkp_B MAX protein, MYC proto- 38.0 34 0.0012 27.1 4.2 30 169-198 50-79 (83)
159 2b9c_A Striated-muscle alpha t 37.3 2.2E+02 0.0075 25.2 14.3 23 130-152 22-44 (147)
160 3gp4_A Transcriptional regulat 37.3 2E+02 0.0069 24.8 10.5 6 139-144 63-68 (142)
161 2f1m_A Acriflavine resistance 37.3 99 0.0034 28.7 8.0 20 227-246 110-129 (277)
162 1s1c_X RHO-associated, coiled- 37.3 1.6E+02 0.0053 23.5 9.9 35 177-211 3-37 (71)
163 3i00_A HIP-I, huntingtin-inter 37.0 2E+02 0.0069 24.7 11.8 16 170-185 19-34 (120)
164 2yy0_A C-MYC-binding protein; 36.8 67 0.0023 23.9 5.3 22 166-187 26-47 (53)
165 1deq_A Fibrinogen (alpha chain 36.5 3.7E+02 0.013 27.7 12.4 17 293-309 184-200 (390)
166 1j1d_C Troponin I, TNI; THIN f 35.9 2.3E+02 0.0078 25.0 11.6 20 127-146 28-47 (133)
167 1gmj_A ATPase inhibitor; coile 35.7 1.1E+02 0.0038 25.1 6.9 22 178-199 56-77 (84)
168 3bua_E HSNM1B, DNA cross-LINK 35.7 17 0.00057 25.2 1.6 18 406-423 5-22 (36)
169 4dzn_A Coiled-coil peptide CC- 35.4 80 0.0027 21.1 4.8 23 178-200 7-29 (33)
170 3m9b_A Proteasome-associated A 35.4 43 0.0015 32.6 5.2 8 272-279 122-129 (251)
171 1ik9_A DNA repair protein XRCC 35.4 2.8E+02 0.0097 25.9 12.0 54 175-228 141-195 (213)
172 3ter_A Mammalian stromal inter 34.9 2.1E+02 0.0073 25.3 9.1 43 221-263 44-87 (136)
173 1m1j_B Fibrinogen beta chain; 34.8 4.2E+02 0.015 27.8 15.2 20 26-45 22-41 (464)
174 3vmx_A Voltage-gated hydrogen 34.7 1.4E+02 0.0047 22.1 7.1 35 167-201 5-39 (48)
175 1t6f_A Geminin; coiled-coil, c 34.2 72 0.0025 22.3 4.7 24 183-206 10-33 (37)
176 1g6u_A Domain swapped dimer; d 33.9 1.3E+02 0.0044 21.6 6.8 17 178-194 25-41 (48)
177 2xnx_M M protein, M1-BC1; cell 33.7 2.6E+02 0.009 25.0 10.7 17 241-257 99-115 (146)
178 3etv_A Protein transport prote 33.6 1.3E+02 0.0044 30.7 8.4 56 130-185 14-71 (355)
179 1zxa_A CGMP-dependent protein 32.8 76 0.0026 25.0 5.3 28 179-206 24-51 (67)
180 2dq3_A Seryl-tRNA synthetase; 32.5 41 0.0014 34.6 4.8 92 163-263 27-118 (425)
181 1joc_A EEA1, early endosomal a 32.4 2.3E+02 0.008 24.1 9.6 12 181-192 19-30 (125)
182 2wt7_B Transcription factor MA 31.7 2.2E+02 0.0075 23.5 9.4 22 182-203 50-71 (90)
183 4emc_A Monopolin complex subun 31.6 3.1E+02 0.011 25.6 10.0 24 244-267 80-107 (190)
184 3lss_A Seryl-tRNA synthetase; 31.6 1.9E+02 0.0066 30.5 9.8 26 349-386 335-360 (484)
185 3tkl_B LIDA protein, substrate 31.4 95 0.0032 29.8 6.6 45 127-171 44-90 (267)
186 4b4t_K 26S protease regulatory 30.9 68 0.0023 33.1 6.1 7 281-287 168-174 (428)
187 3rrk_A V-type ATPase 116 kDa s 30.9 1.7E+02 0.0058 28.5 8.9 48 169-218 95-143 (357)
188 4h22_A Leucine-rich repeat fli 30.7 2.5E+02 0.0085 23.8 10.8 29 171-199 28-56 (103)
189 2zdi_C Prefoldin subunit alpha 30.6 2.2E+02 0.0075 24.7 8.6 42 165-206 97-138 (151)
190 4dci_A Uncharacterized protein 30.0 3E+02 0.01 24.6 11.1 22 230-251 85-106 (150)
191 1x79_B RAB GTPase binding effe 29.9 2.7E+02 0.0091 23.9 11.9 21 128-148 16-36 (112)
192 3oa7_A Head morphogenesis prot 29.7 3.3E+02 0.011 25.7 9.9 63 142-207 9-71 (206)
193 2gd5_A Charged multivesicular 29.6 3.1E+02 0.01 24.5 11.3 39 162-200 10-48 (179)
194 1m1j_C Fibrinogen gamma chain; 29.5 4.8E+02 0.017 26.8 14.3 29 222-250 105-133 (409)
195 3he5_B Synzip2; heterodimeric 28.8 1.7E+02 0.0057 21.3 6.9 6 172-177 23-28 (52)
196 3tq7_B Microtubule-associated 28.4 66 0.0022 26.2 4.4 27 126-152 9-35 (82)
197 1g6u_A Domain swapped dimer; d 28.1 1.7E+02 0.0057 21.0 6.7 22 181-202 21-42 (48)
198 2dgc_A Protein (GCN4); basic d 28.0 79 0.0027 24.2 4.6 26 176-201 33-58 (63)
199 2l5g_B Putative uncharacterize 27.7 1.4E+02 0.0046 21.6 5.3 25 162-186 5-29 (42)
200 4dyl_A Tyrosine-protein kinase 27.1 4.9E+02 0.017 26.1 13.4 132 118-250 91-226 (406)
201 1lwu_C Fibrinogen gamma chain; 27.0 1.1E+02 0.0039 30.5 6.8 9 312-320 89-97 (323)
202 3tnf_B LIDA, RAS-related prote 26.7 1.6E+02 0.0054 29.5 7.5 48 124-171 24-73 (384)
203 4e61_A Protein BIM1; EB1-like 26.4 70 0.0024 27.3 4.4 26 127-152 27-52 (106)
204 2xnx_M M protein, M1-BC1; cell 26.4 3.2E+02 0.011 24.5 8.8 19 169-187 36-54 (146)
205 3frt_A Charged multivesicular 26.3 4.1E+02 0.014 25.0 12.5 40 161-200 9-48 (218)
206 2ke4_A CDC42-interacting prote 26.3 2.8E+02 0.0095 23.0 9.6 32 122-153 19-50 (98)
207 1jnm_A Proto-oncogene C-JUN; B 26.0 63 0.0022 24.4 3.7 19 171-189 34-52 (62)
208 2p22_C Protein SRN2; endosome, 25.8 4E+02 0.014 24.6 11.3 23 194-216 90-112 (192)
209 3bbp_D GRIP and coiled-coil do 25.8 44 0.0015 26.6 2.8 46 164-209 20-65 (71)
210 2aze_B Transcription factor E2 25.7 1.2E+02 0.004 25.6 5.7 22 247-268 55-76 (106)
211 3m91_A Proteasome-associated A 25.6 2.1E+02 0.0071 21.3 6.5 38 162-199 12-49 (51)
212 1fzc_C Fibrin; blood coagulati 25.4 41 0.0014 33.7 3.2 12 283-294 120-131 (319)
213 2dq3_A Seryl-tRNA synthetase; 25.1 86 0.0029 32.2 5.7 26 347-384 293-318 (425)
214 4akv_A Sorting nexin-33; trans 25.0 5.3E+02 0.018 25.8 11.5 17 234-250 362-378 (386)
215 1j1e_C Troponin I, TNI; THIN f 25.0 4.1E+02 0.014 24.5 11.3 20 127-146 28-47 (180)
216 1zhc_A Hypothetical protein HP 24.8 1.7E+02 0.0058 23.1 6.1 37 170-207 21-57 (76)
217 2avr_X Adhesion A; antiparalle 24.4 3.5E+02 0.012 23.5 12.8 8 245-252 104-111 (119)
218 2p22_A Suppressor protein STP2 24.1 3.3E+02 0.011 25.0 8.8 41 210-250 51-91 (174)
219 1wt6_A Myotonin-protein kinase 23.8 3E+02 0.01 22.4 8.7 21 130-150 15-35 (81)
220 4h22_A Leucine-rich repeat fli 23.8 3.3E+02 0.011 23.0 10.8 27 174-200 24-50 (103)
221 2eqb_B RAB guanine nucleotide 23.7 3.2E+02 0.011 22.8 14.6 24 128-151 8-31 (97)
222 3ra3_A P1C; coiled coil domain 23.7 40 0.0014 21.8 1.7 18 186-203 6-23 (28)
223 4fi5_A Nucleoprotein; structur 23.5 3.5E+02 0.012 23.2 8.7 30 159-188 22-51 (113)
224 1gu4_A CAAT/enhancer binding p 23.4 1.5E+02 0.0053 23.7 5.7 30 164-193 41-70 (78)
225 1zhc_A Hypothetical protein HP 23.3 1.5E+02 0.0052 23.3 5.6 50 181-238 18-67 (76)
226 3etw_A Adhesin A; antiparallel 22.1 3.8E+02 0.013 23.1 14.0 10 244-253 103-112 (119)
227 1nkp_B MAX protein, MYC proto- 21.8 92 0.0031 24.6 4.1 26 177-202 51-76 (83)
228 2w6a_A ARF GTPase-activating p 21.6 2.8E+02 0.0097 21.4 8.3 37 173-209 20-56 (63)
229 1xaw_A Occludin; coiled-coil, 21.5 4.3E+02 0.015 23.5 10.7 24 176-199 62-85 (140)
230 2xdj_A Uncharacterized protein 21.4 3.2E+02 0.011 22.0 9.6 56 162-217 9-64 (83)
231 3onj_A T-snare VTI1; helix, HA 21.3 3.3E+02 0.011 22.1 10.7 26 181-206 35-60 (97)
232 2dgc_A Protein (GCN4); basic d 21.3 1.6E+02 0.0053 22.5 5.1 28 179-206 29-56 (63)
233 1lrz_A FEMA, factor essential 21.3 2.5E+02 0.0086 28.2 8.2 38 227-264 286-323 (426)
234 3he5_B Synzip2; heterodimeric 21.3 2.4E+02 0.0082 20.5 6.7 30 171-200 15-44 (52)
235 3ghg_C Fibrinogen gamma chain; 21.1 7E+02 0.024 25.7 15.3 28 126-153 25-52 (411)
236 3mov_A Lamin-B1; LMNB1, B-type 21.0 2.2E+02 0.0075 23.5 6.3 24 178-201 35-58 (95)
237 1qvr_A CLPB protein; coiled co 20.9 2.8E+02 0.0096 30.5 9.1 13 192-204 435-447 (854)
238 3plt_A Sphingolipid long chain 20.8 5.6E+02 0.019 24.5 15.6 79 126-207 74-158 (234)
239 2w83_C C-JUN-amino-terminal ki 20.6 3.4E+02 0.012 21.9 10.6 36 171-206 28-63 (77)
240 3he4_A Synzip6; heterodimeric 20.5 2.6E+02 0.0089 20.5 6.0 15 186-200 30-44 (56)
241 2qyw_A Vesicle transport throu 20.4 3.6E+02 0.012 22.1 10.6 17 125-141 15-31 (102)
242 2gd5_A Charged multivesicular 20.3 4.6E+02 0.016 23.3 13.4 25 163-187 25-49 (179)
No 1
>4ddp_A Beclin-1; ECD, autophagy, membrane binding, membrane protein; 1.55A {Homo sapiens}
Probab=100.00 E-value=4.1e-80 Score=588.13 Aligned_cols=192 Identities=44% Similarity=0.900 Sum_probs=172.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeeecCCeeeeccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhc
Q 012379 226 AHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYF 305 (465)
Q Consensus 226 ~~~~e~~sl~~q~~~~~~~LdkL~ktNV~Nd~F~I~hdG~fGTINGlRLGrlp~~~V~W~EINAAwGQ~~LLL~tla~~l 305 (465)
++++|++|+++||+++++|||+|+||||||++|||||||+|||||||||||+|++||+|+||||||||+||||++||+++
T Consensus 2 ~~~~e~~sl~~q~~~~~~~L~~L~~tNv~n~~F~I~hdG~fgtINglRLGrlp~~~V~W~EINAAwGq~~LLL~tla~~l 81 (210)
T 4ddp_A 2 ELDDELKSVENQMRYAQTQLDKLKKTNVFNATFHIWHSGQFGTINNFRLGRLPSVPVEWNEINAAWGQTVLLLHALANKM 81 (210)
T ss_dssp ------CCHHHHHHHHHHHHHTC----CCSSCCCEEEETTEEEETTEECCCBTTBCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhcccccceeEEEecCCceeEcccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceeeeecCCCceeeccCC--ceeecccCC--CCccccchhHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCC
Q 012379 306 RPKFPYRIKIIPMGSYPRIMDSNN--NTYELFGPV--NLFWSTRYDKAMTLFLSCLKDFAEFANSKDQENNIPPDKCFKL 381 (465)
Q Consensus 306 ~~~f~~~ykLvPmGS~SkI~~~~~--~~~~Lyg~~--~lf~~~kFD~AM~afL~cl~q~~~~~~~~d~~~~~~~~~~~~L 381 (465)
+++|+ +|+|+||||+|+|++..+ .+|+||+++ ++|++++||+||+|||+||+||++++++.+ ++++|
T Consensus 82 ~~~f~-~y~L~P~GS~S~I~~~~~~~~~l~Ly~sg~~~~f~~~kFD~Am~afL~cl~q~~~~~~~~~--------~~~~l 152 (210)
T 4ddp_A 82 GLKFQ-RYRLVPYGNHSYLESLTDKSKELPLYCSGGLRFFWDNKFDHAMVAFLDCVQQFKEEVEKGE--------TRFCL 152 (210)
T ss_dssp TCCCS-SEEEECCGGGCEEEESSCTTCCEESCCCSSCGGGCCSHHHHHHHHHHHHHHHHHHHHHCC---------CCCCC
T ss_pred CCCcc-ceeEEecCCcceeeEecCCCeEEeceeCCCccccccccccHHHHHHHHHHHHHHHHHhcCC--------CCCCC
Confidence 99999 999999999999998653 589999754 789999999999999999999999998754 47999
Q ss_pred ceee--eCCccc-------eeeEEecCCCCchhhHHHHHHHhhHHHHHHHHhhC
Q 012379 382 PYKI--ENDKVE-------NYSITQSFNKQENWTKALKYTLCNLKWALFWFVGN 426 (465)
Q Consensus 382 PY~I--~kdkI~-------g~SIkl~~n~~e~WTkAlK~lLtNlKwlLaw~~~~ 426 (465)
||+| ++|||+ |+|||+++|++|+||+|||||||||||+|||++..
T Consensus 153 PY~I~~~~dkI~D~~~~~~~~SIrl~~n~~e~WTkAlK~mLtnlKw~La~~s~~ 206 (210)
T 4ddp_A 153 PYRMDVEKGKIEDTGGSGGSYSIKTQFNSEEQWTKALKFMLTNLKWGLAWVSSQ 206 (210)
T ss_dssp SSCEETTTTEEECTTTTCCEEESCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEecCCCEecCccCCCCceEEEecCCCccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999 799997 79999999999999999999999999999999863
No 2
>3vp7_A Vacuolar protein sorting-associated protein 30; targeting, PI3-kinase complex I, PRE-autophagosomal structur protein transport; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-73 Score=546.95 Aligned_cols=175 Identities=31% Similarity=0.559 Sum_probs=150.3
Q ss_pred cccCCCceeeeecCCeeeeccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecCCCceeec----
Q 012379 251 TNVLNDAFPIWHDGEFGTINNFRLGRLPKIPVEWDEINAAWGQACLLLHTMCQYFRPKFPYRIKIIPMGSYPRIMD---- 326 (465)
Q Consensus 251 tNV~Nd~F~I~hdG~fGTINGlRLGrlp~~~V~W~EINAAwGQ~~LLL~tla~~l~~~f~~~ykLvPmGS~SkI~~---- 326 (465)
||||||+|||||||+|||||||||||+|++||+|+||||||||+||||++||++++++|+ +|+|+||||+|+|++
T Consensus 1 tNV~Nd~F~I~hdg~fgTINglRLGrl~~~~V~W~EINAAwGq~~LLL~tla~kl~~~f~-~Y~L~PmGS~S~I~~~~~~ 79 (220)
T 3vp7_A 1 INIFNATFKISHSGPFATINGLRLGSIPESVVPWKEINAALGQLILLLATINKNLKINLV-DYELQPMGSFSKIKKRMVN 79 (220)
T ss_dssp CCTTTTTCCEEEETTEEEETTEEECCBTTBCCCHHHHHHHHHHHHHHHHHHHHHTTCCCS-SEEEECCGGGCEEEEEC--
T ss_pred CccccceeEEeecCCceeEcccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcc-cceEEeCCCcceEeecccc
Confidence 799999999999999999999999999999999999999999999999999999999999 999999999999998
Q ss_pred ---cC---------CceeecccCCC-----Ccc-ccchhHHHHHHHHHHHHHHHHHhccCC------------------C
Q 012379 327 ---SN---------NNTYELFGPVN-----LFW-STRYDKAMTLFLSCLKDFAEFANSKDQ------------------E 370 (465)
Q Consensus 327 ---~~---------~~~~~Lyg~~~-----lf~-~~kFD~AM~afL~cl~q~~~~~~~~d~------------------~ 370 (465)
.+ ..+|+||++++ +|+ ++|||+||+|||+||+||++|+++.++ .
T Consensus 80 ~~~~~~~~~~~~~~~~~l~Ly~s~~~~lg~~f~~~~kFD~aMvafL~cl~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (220)
T 3vp7_A 80 SVEYNNSTTNAPGDWLILPVYYDENFNLGRIFRKETKFDKSLETTLEIISEITRQLSTIASSYSSQTLTTSQDESSMNNA 159 (220)
T ss_dssp -------------CEEEEESSCCC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHC------------------
T ss_pred cccccccccccCCCCeEEecccCCCcccccccccccchhHHHHHHHHHHHHHHHHHHhcCcccccccccccccccccccc
Confidence 32 25799998864 575 469999999999999999999876432 0
Q ss_pred CCCCCCC-CCCCceeeeCCccceeeEEecC-CCCchhhHHHHHHHhhHHHHHHHHhhC
Q 012379 371 NNIPPDK-CFKLPYKIENDKVENYSITQSF-NKQENWTKALKYTLCNLKWALFWFVGN 426 (465)
Q Consensus 371 ~~~~~~~-~~~LPY~I~kdkI~g~SIkl~~-n~~e~WTkAlK~lLtNlKwlLaw~~~~ 426 (465)
+.+.++. +++|||+|++|||||+|||+++ |++|+||||||||||||||+|||++..
T Consensus 160 ~~~~~~~~~l~LPY~I~~DkI~g~SIkl~~~~~~e~WTkAlK~~LtnlKwlLa~~S~~ 217 (220)
T 3vp7_A 160 NDVENSTSILELPYIMNKDKINGLSVKLHGSSPNLEWTTAMKFLLTNVKWLLAFSSNL 217 (220)
T ss_dssp ---------CCCSSCEETTEETTEESCCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCcccCCeEeeCCcCCCEEEEeecCCCccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1111222 4999999999999999999987 579999999999999999999999854
No 3
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=99.72 E-value=8.3e-17 Score=136.63 Aligned_cols=90 Identities=22% Similarity=0.429 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 162 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVS 241 (465)
Q Consensus 162 e~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~ 241 (465)
+.+.+++..|+.+|.+|.++|++||++++.++.+|..++.+...|+.+|.+||++||.|++++.+|+++++|+++||.|+
T Consensus 7 ~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~ 86 (96)
T 3q8t_A 7 EQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYA 86 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhc
Q 012379 242 QAHLELLKRT 251 (465)
Q Consensus 242 ~~~LdkL~kt 251 (465)
++||++|+|.
T Consensus 87 ~~qLdkL~K~ 96 (96)
T 3q8t_A 87 QMQLDKLKKK 96 (96)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHhhcC
Confidence 9999999973
No 4
>2p1l_B Beclin 1; apoptosis, autophagy, BH3 domain, BCL; 2.50A {Homo sapiens} PDB: 3dvu_C 2pon_A
Probab=98.38 E-value=7.5e-08 Score=65.85 Aligned_cols=27 Identities=26% Similarity=0.471 Sum_probs=18.5
Q ss_pred CCccchhHHHHHHHHHhhcCCcccCCc
Q 012379 91 NSGFHSTITVLKRAFEIATSQTQVEQP 117 (465)
Q Consensus 91 ~~~ls~~i~~l~~lFdIlSs~s~iDhP 117 (465)
..+||++++++++||||||++++||||
T Consensus 5 ~~~ls~~~~~~~~lFdILS~~sdIDhP 31 (31)
T 2p1l_B 5 MENLSRRLKVTGDLFDIMSGQTDVDHP 31 (31)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-------
T ss_pred cccHHHHHHHHHHHHHHHhCCCcCCCC
Confidence 356999999999999999999999999
No 5
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=96.42 E-value=0.27 Score=44.67 Aligned_cols=20 Identities=15% Similarity=0.086 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 012379 130 LDKEVDDVTRDIEAYEACLQ 149 (465)
Q Consensus 130 L~~qle~~~~E~d~Y~~fL~ 149 (465)
+++.+..+..+.+.+..-+.
T Consensus 4 ~~~~~~~l~~~~~~~~~~~~ 23 (284)
T 1c1g_A 4 IKKKMQMLKLDKENALDRAD 23 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHH
Confidence 33333333344443333333
No 6
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=96.30 E-value=0.5 Score=44.41 Aligned_cols=60 Identities=15% Similarity=0.272 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 125 VLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVN 193 (465)
Q Consensus 125 ~Lle~L~~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~ 193 (465)
.+...+..++++++.|-+.|+..=+.|+. ++.+++..+++..+.|...+..|..+...+.
T Consensus 17 ~~~~~~~q~~~~le~El~EFqesSrELE~---------ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k 76 (189)
T 2v71_A 17 ELSMKYKQSFQEARDELVEFQEGSRELEA---------ELEAQLVQAEQRNRDLQADNQRLKYEVEALK 76 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777888888888888777776653 2344444444444444444444444444433
No 7
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=96.03 E-value=0.73 Score=41.70 Aligned_cols=14 Identities=7% Similarity=0.074 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q 012379 132 KEVDDVTRDIEAYE 145 (465)
Q Consensus 132 ~qle~~~~E~d~Y~ 145 (465)
.++..+..+...+.
T Consensus 27 ~~l~~l~~~~~~~~ 40 (284)
T 1c1g_A 27 ADKKAAEDRSKQLE 40 (284)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 8
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=95.79 E-value=1.1 Score=40.83 Aligned_cols=82 Identities=16% Similarity=0.151 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 169 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELL 248 (465)
Q Consensus 169 ~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~LdkL 248 (465)
...+.+.+.|...|+++|.--+........|+.++.+|++.=...=..|-..+..+-....++.++.+.+.+..+.+.+|
T Consensus 73 d~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~~~~ 152 (155)
T 2efr_A 73 DKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVARL 152 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 34555666666666666666666666666666666665533333333444455566666667777888888888888888
Q ss_pred hh
Q 012379 249 KR 250 (465)
Q Consensus 249 ~k 250 (465)
++
T Consensus 153 ~~ 154 (155)
T 2efr_A 153 KK 154 (155)
T ss_dssp HT
T ss_pred hc
Confidence 76
No 9
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=95.75 E-value=0.45 Score=39.91 Aligned_cols=80 Identities=16% Similarity=0.236 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 012379 141 IEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNF 220 (465)
Q Consensus 141 ~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~ 220 (465)
+.+-..-|+.|+.+ +..+..++..|+.++..+..+|..++.+..+++.+-.....+...+.-.--+|-.+..++
T Consensus 6 ~~~l~~eL~~l~~e------E~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl 79 (96)
T 3q8t_A 6 SEQLQRELKELALE------EERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSV 79 (96)
T ss_dssp HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666532 456788899999999999999999999999998888888777776654444444444444
Q ss_pred HHHHHH
Q 012379 221 QFQLIA 226 (465)
Q Consensus 221 q~ql~~ 226 (465)
..++.-
T Consensus 80 ~~q~~~ 85 (96)
T 3q8t_A 80 ENQMRY 85 (96)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 10
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.55 E-value=0.15 Score=53.61 Aligned_cols=29 Identities=7% Similarity=0.051 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 169 LKIEEEERKLEAAIEETEKQNAEVNAELK 197 (465)
Q Consensus 169 ~~Le~EE~~L~~eL~~LE~e~~~l~~el~ 197 (465)
+++++..+.++.++...+++.++..++++
T Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (597)
T 3oja_B 512 THLKERQAFKLRETQARRTEADAKQKETE 540 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhHHHHHHHHHhhhhhhcchh
Confidence 33333333333333333333333333333
No 11
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.17 E-value=0.3 Score=51.34 Aligned_cols=55 Identities=13% Similarity=0.069 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012379 196 LKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 250 (465)
Q Consensus 196 l~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~LdkL~k 250 (465)
+..++.+.+.+..+-+++-++.+..+.++..+++++..++.+++..+.++..|++
T Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~ 565 (597)
T 3oja_B 511 FTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQ 565 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHH
Confidence 3333333333333333444444445555555555566666655555555544443
No 12
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.14 E-value=1.2 Score=42.76 Aligned_cols=11 Identities=27% Similarity=0.353 Sum_probs=7.7
Q ss_pred eeecCCCceee
Q 012379 315 IIPMGSYPRIM 325 (465)
Q Consensus 315 LvPmGS~SkI~ 325 (465)
++.|=+|.+|.
T Consensus 222 Iv~Cp~CgRIL 232 (256)
T 3na7_A 222 MITCPYCGRIL 232 (256)
T ss_dssp CEECTTTCCEE
T ss_pred EEECCCCCeeE
Confidence 66777777774
No 13
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.11 E-value=1.6 Score=41.91 Aligned_cols=37 Identities=14% Similarity=0.161 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 164 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 200 (465)
Q Consensus 164 l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le 200 (465)
+.+|+..++.+...++.++.++..+.+.+..++..++
T Consensus 95 L~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~ 131 (256)
T 3na7_A 95 LNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLK 131 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444433333333
No 14
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=94.84 E-value=0.19 Score=58.00 Aligned_cols=29 Identities=14% Similarity=0.213 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 178 LEAAIEETEKQNAEVNAELKELELKSKRF 206 (465)
Q Consensus 178 L~~eL~~LE~e~~~l~~el~~le~e~~~L 206 (465)
++.++..|+++.+++++++.++.+|.+.+
T Consensus 982 ~~~~v~~L~~e~~~l~~~~~~~~ke~~~l 1010 (1080)
T 2dfs_A 982 ATNRVLSLQEEIAKLRKELHQTQTEKKTI 1010 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444433333
No 15
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=94.48 E-value=3 Score=38.51 Aligned_cols=44 Identities=20% Similarity=0.201 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 012379 192 VNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAIS 235 (465)
Q Consensus 192 l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~ 235 (465)
+...+..|+.+.+++..-+.+.-.+...++-.+..++.+..++.
T Consensus 95 lq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 95 LQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33445555555566666666666666666666666666666555
No 16
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=94.40 E-value=2.7 Score=39.48 Aligned_cols=111 Identities=14% Similarity=0.233 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHhcccccC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH
Q 012379 136 DVTRDIEAYEACLQRLEGEARDV-LSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF----KELE 210 (465)
Q Consensus 136 ~~~~E~d~Y~~fL~~L~~~~~~~-~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L----~~~E 210 (465)
..+.|+..|.....+....-... ..-++|...-. +=|..|+++|+.+++....+...+..|..+.... +..-
T Consensus 7 s~~ee~~ywk~~~~~~~q~~~~le~El~EFqesSr---ELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~ 83 (189)
T 2v71_A 7 SLKEETAYWKELSMKYKQSFQEARDELVEFQEGSR---ELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQY 83 (189)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777766555443221000 00122322222 2233445566666666666665555555554433 3333
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHh
Q 012379 211 ERYWQEFNNFQFQLIAHQEERDAISSK---IEVSQAHLELLK 249 (465)
Q Consensus 211 ~~~w~e~n~~q~ql~~~~~e~~sl~~q---~~~~~~~LdkL~ 249 (465)
.+.-...|.++.++..+...++.+..+ +++++..|++=.
T Consensus 84 ~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~ 125 (189)
T 2v71_A 84 AQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAK 125 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 345566888888888888777777654 344455554433
No 17
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=94.24 E-value=0.6 Score=41.62 Aligned_cols=69 Identities=17% Similarity=0.253 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 012379 163 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEER 231 (465)
Q Consensus 163 ~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~ 231 (465)
++..++.++..+-+.|.++++++++|...+..++..++.+...+..+-+++-++++.++.+...++.++
T Consensus 65 NiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 65 NIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777888888888888888888888888888888887777776777777777777776655433
No 18
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=94.21 E-value=0.9 Score=57.86 Aligned_cols=68 Identities=18% Similarity=0.240 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 178 LEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHL 245 (465)
Q Consensus 178 L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~L 245 (465)
++++|.++|++.++..+++.+++.+++++++.=+++=.+|.....+...++++.+..+.+++.|..-+
T Consensus 2012 kr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li 2079 (3245)
T 3vkg_A 2012 LREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALL 2079 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666666666554445555555555555555555555555555554333
No 19
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=93.36 E-value=4.5 Score=36.76 Aligned_cols=32 Identities=9% Similarity=0.092 Sum_probs=18.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 215 QEFNNFQFQLIAHQEERDAISSKIEVSQAHLE 246 (465)
Q Consensus 215 ~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld 246 (465)
+.+..++..+-.+++++.+-+.+|...+..|+
T Consensus 98 Rsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd 129 (155)
T 2efr_A 98 RSVTKLEKSIDDLEDELYAQKLKYKAISEEMK 129 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666666666666666666655555
No 20
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=90.80 E-value=3.4 Score=52.82 Aligned_cols=33 Identities=9% Similarity=0.194 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 012379 121 ECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEG 153 (465)
Q Consensus 121 eC~d~Lle~L~~qle~~~~E~d~Y~~fL~~L~~ 153 (465)
|-...-..-|.++..++...++.|..=|++|..
T Consensus 1899 eli~~y~~ll~~K~~el~~~~~rl~~GL~KL~e 1931 (3245)
T 3vkg_A 1899 DFINQVVLLINEKRDQLEEEQLHLNIGLKKLRD 1931 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555556667777777788888888888753
No 21
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=90.16 E-value=6.9 Score=32.55 Aligned_cols=33 Identities=9% Similarity=0.192 Sum_probs=13.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 214 WQEFNNFQFQLIAHQEERDAISSKIEVSQAHLE 246 (465)
Q Consensus 214 w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld 246 (465)
..+...++.++..+.++...+...+......+.
T Consensus 70 ~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 70 HLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444443333
No 22
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=90.14 E-value=6.2 Score=32.34 Aligned_cols=68 Identities=15% Similarity=0.112 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 167 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLE 246 (465)
Q Consensus 167 e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~Ld 246 (465)
++..++++-..+...+...++.+.++......+..+ .|+++.++.+.++.+..|.++-.....+|.
T Consensus 15 Em~~~eeel~~lke~l~k~e~~rkele~~~~~l~~e--------------k~~L~~ql~eaEe~~~~L~~~K~eLE~~l~ 80 (89)
T 3bas_A 15 EMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQ--------------KNDLFGSMKQLEDKVEELLSKNYHLENEVA 80 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444333 344444456666666666555554444444
Q ss_pred HH
Q 012379 247 LL 248 (465)
Q Consensus 247 kL 248 (465)
-|
T Consensus 81 el 82 (89)
T 3bas_A 81 RL 82 (89)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 23
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=89.99 E-value=5.7 Score=34.27 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 012379 226 AHQEERDAISSKIEVSQAHLELL 248 (465)
Q Consensus 226 ~~~~e~~sl~~q~~~~~~~LdkL 248 (465)
....+.+.|..++.+.+.++.+|
T Consensus 87 kl~~eKe~L~~ql~~Lq~q~~~l 109 (110)
T 2v4h_A 87 KLVEKKEYLQEQLEQLQREFNKL 109 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHhHHHHHHHHHHHHHHHHHhc
Confidence 34455556666666666665544
No 24
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=89.49 E-value=6.6 Score=40.27 Aligned_cols=13 Identities=8% Similarity=0.189 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 012379 136 DVTRDIEAYEACL 148 (465)
Q Consensus 136 ~~~~E~d~Y~~fL 148 (465)
..+++.+.+...+
T Consensus 364 ~l~~~~~~le~~~ 376 (487)
T 3oja_A 364 TLEQKKKALDEQV 376 (487)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444333
No 25
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=88.91 E-value=9 Score=31.75 Aligned_cols=69 Identities=17% Similarity=0.208 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012379 180 AAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 250 (465)
Q Consensus 180 ~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~LdkL~k 250 (465)
.....||.+...|+.++..+.... -.....-|..+.+.++.++.....++..+..+++.....++.+++
T Consensus 23 dKVR~LEqqN~~Le~~i~~l~~~~--~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~ 91 (93)
T 3s4r_A 23 DKVRFLEQQNKILLAELEQLKGQG--KSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE 91 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334445555555555555443321 223445588888888899988888888888888888888888774
No 26
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=88.69 E-value=3 Score=37.91 Aligned_cols=23 Identities=13% Similarity=0.150 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 012379 181 AIEETEKQNAEVNAELKELELKS 203 (465)
Q Consensus 181 eL~~LE~e~~~l~~el~~le~e~ 203 (465)
.|..|++++..+..++.+++.+.
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel 91 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVI 91 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444333
No 27
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=88.62 E-value=7.7 Score=35.23 Aligned_cols=65 Identities=18% Similarity=0.114 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 012379 165 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISS 236 (465)
Q Consensus 165 ~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~ 236 (465)
...+..|+.|...+..+|.+++.+..+..+.+..+..|...|. -++|.++-.+..++.|.+.|-.
T Consensus 67 ~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLq-------lq~n~lE~kl~kLq~EN~~LV~ 131 (152)
T 3a7p_A 67 LNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGT-------IENNVLQQKLSDLKKEHSQLVA 131 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666666655555555555554444443 2244444445555555544433
No 28
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=88.36 E-value=8.5 Score=30.82 Aligned_cols=36 Identities=28% Similarity=0.372 Sum_probs=24.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012379 215 QEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 250 (465)
Q Consensus 215 ~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~LdkL~k 250 (465)
.++..++..+..++++++.++.++..++..|+.-.+
T Consensus 41 ~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeaek 76 (81)
T 1ic2_A 41 DELVALQKKLKGTEDELDKYSESLKDAQEKLELADK 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666677777777777777777777766544
No 29
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=87.68 E-value=11 Score=38.59 Aligned_cols=39 Identities=10% Similarity=0.070 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 012379 188 QNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIA 226 (465)
Q Consensus 188 e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~ 226 (465)
++++..++.+....+.+.+.++.++.-++..++..++.+
T Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (487)
T 3oja_A 429 VQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALAS 467 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHh
Confidence 333333333333444444443333333444444444433
No 30
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=87.67 E-value=14 Score=38.08 Aligned_cols=41 Identities=20% Similarity=0.284 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhhcccCCCceeeeecCCeeeeccccCCCCCCC-CCChH
Q 012379 238 IEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGRLPKI-PVEWD 285 (465)
Q Consensus 238 ~~~~~~~LdkL~ktNV~Nd~F~I~hdG~fGTINGlRLGrlp~~-~V~W~ 285 (465)
|+..+.||+.++.+|.+... .+ -++..|..+-+++. |=+|.
T Consensus 181 ye~qqKQL~qv~a~~llP~~-~~------q~lp~LK~~p~kd~vP~~fK 222 (390)
T 1deq_A 181 YKNQQKQLEQVIAINLLPSR-DI------QYLPILKMSTITGPVPREFK 222 (390)
T ss_pred HHHHHHHHHhhhhhcccccc-cc------ccccccccccccccCChhhc
Confidence 44455678888888877642 11 23666777766653 33555
No 31
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=86.79 E-value=8.2 Score=34.24 Aligned_cols=39 Identities=10% Similarity=0.043 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 171 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKEL 209 (465)
Q Consensus 171 Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~ 209 (465)
+-.|--++..+.+.|+.+.+++..|+.+|..+...++..
T Consensus 66 iadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k 104 (138)
T 3hnw_A 66 IADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIK 104 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555544444433
No 32
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=85.75 E-value=13 Score=30.32 Aligned_cols=36 Identities=25% Similarity=0.193 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 167 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 202 (465)
Q Consensus 167 e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e 202 (465)
++.+++..-.+......+|+.....+.++..+|..+
T Consensus 22 el~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 22 QMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444455555555555555555555544
No 33
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=83.49 E-value=3.7 Score=32.97 Aligned_cols=44 Identities=20% Similarity=0.219 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 163 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 206 (465)
Q Consensus 163 ~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L 206 (465)
+++..+.+-.+|.+..+..|+++|++..+.+++|..|+.++..+
T Consensus 23 eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 23 DLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444455556666677788888888888888777766544
No 34
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=83.44 E-value=19 Score=30.12 Aligned_cols=24 Identities=17% Similarity=0.144 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 127 SDKLDKEVDDVTRDIEAYEACLQR 150 (465)
Q Consensus 127 le~L~~qle~~~~E~d~Y~~fL~~ 150 (465)
++.+++.+..+..|.+.+..-...
T Consensus 4 MdaIKkKm~~lk~e~e~a~drae~ 27 (101)
T 3u1c_A 4 MDAIKKKMQMLKLDKENALDRAEQ 27 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555554444433
No 35
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=82.96 E-value=8.1 Score=32.10 Aligned_cols=39 Identities=28% Similarity=0.427 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 166 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSK 204 (465)
Q Consensus 166 ~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~ 204 (465)
.-...|++..+.+..+++.|+++...+..++.+++.++.
T Consensus 70 ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~ 108 (117)
T 2zqm_A 70 KAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQ 108 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456666666667777777777777666666665543
No 36
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=82.19 E-value=18 Score=29.61 Aligned_cols=19 Identities=26% Similarity=0.468 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 012379 181 AIEETEKQNAEVNAELKEL 199 (465)
Q Consensus 181 eL~~LE~e~~~l~~el~~l 199 (465)
|+++|..+...+.++...+
T Consensus 28 EieELKekN~~L~~e~~e~ 46 (81)
T 2jee_A 28 EIEELKEKNNSLSQEVQNA 46 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333433444333333333
No 37
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=82.01 E-value=21 Score=29.66 Aligned_cols=18 Identities=17% Similarity=0.191 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 012379 128 DKLDKEVDDVTRDIEAYE 145 (465)
Q Consensus 128 e~L~~qle~~~~E~d~Y~ 145 (465)
+.+++.+..+..|.+.+.
T Consensus 5 d~iKkKm~~lk~e~e~a~ 22 (101)
T 3u59_A 5 EAIKKKMQMLKLDKENAI 22 (101)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 38
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=81.98 E-value=24 Score=30.37 Aligned_cols=85 Identities=13% Similarity=0.198 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 128 DKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 207 (465)
Q Consensus 128 e~L~~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~ 207 (465)
..|+.....+.-|++.|..-++....+... .-..+++++..|..+.+.+...|.+||.....++..-+... .-|+
T Consensus 6 rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~--~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~---~SLe 80 (111)
T 2v66_B 6 RDLQADNQRLKYEVEALKEKLEHQYAQSYK--QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATI---VSLE 80 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHH---hhHH
Confidence 457888889999999999888776544321 12457888889999999999999999999988877554443 3455
Q ss_pred HHHHHHHHHH
Q 012379 208 ELEERYWQEF 217 (465)
Q Consensus 208 ~~E~~~w~e~ 217 (465)
+.|.+|=+.+
T Consensus 81 D~E~k~n~ai 90 (111)
T 2v66_B 81 DFEQRLNQAI 90 (111)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666555543
No 39
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=81.97 E-value=23 Score=30.07 Aligned_cols=62 Identities=24% Similarity=0.441 Sum_probs=38.2
Q ss_pred HHHHHH-HHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 143 AYEACL-QRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKEL 209 (465)
Q Consensus 143 ~Y~~fL-~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~ 209 (465)
+|.++- ++|. .++..++..|-..||.....++.+-..+..........+++|+.+..+|..+
T Consensus 18 ~YE~~h~ErL~-----~mSKqELIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~E 80 (104)
T 3s9g_A 18 TYERYHTESLQ-----NMSKQELIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAE 80 (104)
T ss_dssp HHHHHHHHHHH-----TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHH
Confidence 566553 4554 3566677777666766666666665555555555566666676666666543
No 40
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=81.47 E-value=21 Score=37.94 Aligned_cols=94 Identities=20% Similarity=0.346 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 138 TRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEF 217 (465)
Q Consensus 138 ~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~ 217 (465)
+.+..+|+.-|.|+++...+ -.++.++.+.++..+-++..+|.+.+++..++..++- +.++++.++.-..|=+++
T Consensus 8 q~~la~yq~elarvqkana~--aka~Ye~~~ae~~a~n~~i~aeNeaikkrNa~aka~Y---e~~l~kY~~dlakY~~~~ 82 (497)
T 3iox_A 8 QAKLTAYQTELARVQKANAD--AKAAYEAAVAANNAANAALTAENTAIKKRNADAKADY---EAKLAKYQADLAKYQKDL 82 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 44556788888887654321 1223334444455555555566666655555443321 222222222223444555
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 012379 218 NNFQFQLIAHQEERDAISS 236 (465)
Q Consensus 218 n~~q~ql~~~~~e~~sl~~ 236 (465)
-+++.++...++++..+..
T Consensus 83 AeY~~kl~aYe~~~~~~~k 101 (497)
T 3iox_A 83 ADYPVKLKAYEDEQTSIKA 101 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5556666666666554433
No 41
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=81.35 E-value=21 Score=29.51 Aligned_cols=35 Identities=11% Similarity=0.253 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 169 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKS 203 (465)
Q Consensus 169 ~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~ 203 (465)
...+.+...+..++..+..+...++.++..++.+.
T Consensus 67 ~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~ 101 (112)
T 1l8d_A 67 SKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEI 101 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555544443
No 42
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=80.78 E-value=16 Score=29.18 Aligned_cols=19 Identities=16% Similarity=0.074 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 012379 130 LDKEVDDVTRDIEAYEACL 148 (465)
Q Consensus 130 L~~qle~~~~E~d~Y~~fL 148 (465)
+++.+..+..|.+.+..-+
T Consensus 4 ikkKm~~lk~e~d~a~~~~ 22 (81)
T 1ic2_A 4 IKKKMQMLKLDKENALDRA 22 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444333
No 43
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=80.25 E-value=54 Score=33.28 Aligned_cols=69 Identities=20% Similarity=0.239 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012379 178 LEAAIEETEKQNAEVNAELKELELKSKRF-KELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 250 (465)
Q Consensus 178 L~~eL~~LE~e~~~l~~el~~le~e~~~L-~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~LdkL~k 250 (465)
|.++|.++++...+++++-.....-...| +.+|+ +...-+....+++.|...++.+++.+..++++||+
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (471)
T 3mq9_A 402 LQQELTEAQKGFQDVEAQAATANHTVMALMASLDA----EKAQGQKKVEELEGEITTLNHKLQDASAEVERLRR 471 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44444444444444444333322222222 23333 33333456777888888899999999999999875
No 44
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=79.96 E-value=11 Score=40.50 Aligned_cols=46 Identities=11% Similarity=0.017 Sum_probs=22.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeeec
Q 012379 215 QEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHD 263 (465)
Q Consensus 215 ~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~LdkL~ktNV~Nd~F~I~hd 263 (465)
.....||..+.+...+.+-|+.-|+ .+++.-|---.-+-.|.|.++
T Consensus 131 snIrvLQsnLedq~~kIQRLEvDId---iqirsCKgsCsr~~~~~vd~~ 176 (562)
T 3ghg_A 131 QHIQLLQKNVRAQLVDMKRLEVDID---IKIRSCRGSCSRALAREVDLK 176 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHGGGTBSCCCCCCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhccccccchheeecchH
Confidence 4455555555555444444444333 345555555554555555443
No 45
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=79.59 E-value=18 Score=35.11 Aligned_cols=73 Identities=11% Similarity=0.270 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 170 KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQ 242 (465)
Q Consensus 170 ~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~ 242 (465)
.|..+-+.+..+|+-|+-.+.-...||.++..++++|+..-+...+.+-.++.+-..+++++.-++.+++..+
T Consensus 153 ~Lkk~~~~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rief~q 225 (242)
T 3uux_B 153 ALKSFSQTLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDFLE 225 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 4666667777888888888888888888888888888877777777777777776676777766666655543
No 46
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=79.31 E-value=16 Score=37.29 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 180 AAIEETEKQNAEVNAELKELELKSKR 205 (465)
Q Consensus 180 ~eL~~LE~e~~~l~~el~~le~e~~~ 205 (465)
+.++++|.|...++++|++++.+.++
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (471)
T 3mq9_A 443 KKVEELEGEITTLNHKLQDASAEVER 468 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555544444444433
No 47
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=78.93 E-value=48 Score=35.57 Aligned_cols=19 Identities=26% Similarity=0.291 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHhhcccCC
Q 012379 237 KIEVSQAHLELLKRTNVLN 255 (465)
Q Consensus 237 q~~~~~~~LdkL~ktNV~N 255 (465)
-|+..|.||+.+..+|+++
T Consensus 177 sY~~~QKQLeQv~a~dL~p 195 (562)
T 3ghg_A 177 DYEDQQKQLEQVIAKDLLP 195 (562)
T ss_dssp HHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHhhcccCC
Confidence 4667777888888888877
No 48
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=78.83 E-value=30 Score=29.76 Aligned_cols=34 Identities=24% Similarity=0.360 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 167 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 200 (465)
Q Consensus 167 e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le 200 (465)
|+..+...-..|..+|+.+...++.++..|.+++
T Consensus 37 Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e 70 (129)
T 3tnu_B 37 EISEMNRMIQRLRAEIDNVKKQCANLQNAIADAE 70 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3344444444455555555555554444444443
No 49
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=78.65 E-value=31 Score=29.57 Aligned_cols=30 Identities=23% Similarity=0.238 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012379 123 MRVLSDKLDKEVDDVTRDIEAYEACLQRLE 152 (465)
Q Consensus 123 ~d~Lle~L~~qle~~~~E~d~Y~~fL~~L~ 152 (465)
...-|..|.++++.+..|+.....-++.+.
T Consensus 18 ye~~I~~LR~qid~~~~e~a~l~leldn~~ 47 (119)
T 3ol1_A 18 YEEEMRELRRQVDQLTNDKARVEVERDNLA 47 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677777777777766666665554
No 50
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=77.95 E-value=27 Score=28.46 Aligned_cols=36 Identities=19% Similarity=0.290 Sum_probs=20.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012379 216 EFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRT 251 (465)
Q Consensus 216 e~n~~q~ql~~~~~e~~sl~~q~~~~~~~LdkL~kt 251 (465)
+++.++..+-...=.+-.|+++++..+..|.-|++.
T Consensus 50 d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fLkk~ 85 (86)
T 3swk_A 50 TLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKL 85 (86)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344444444444444455667777777777777653
No 51
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=77.30 E-value=8.2 Score=29.70 Aligned_cols=39 Identities=23% Similarity=0.319 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 170 KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKE 208 (465)
Q Consensus 170 ~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~ 208 (465)
+-..+...|..+.++|+++..+|..++..|+.|...|.+
T Consensus 20 KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 20 KKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677788888888888888888888877766654
No 52
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=76.86 E-value=27 Score=30.19 Aligned_cols=27 Identities=19% Similarity=0.293 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 172 EEEERKLEAAIEETEKQNAEVNAELKE 198 (465)
Q Consensus 172 e~EE~~L~~eL~~LE~e~~~l~~el~~ 198 (465)
...-..|..+|+.+...++.++..|.+
T Consensus 44 rr~iq~L~~el~~l~~~~~sLE~~l~e 70 (131)
T 3tnu_A 44 RRTMQNLEIELQSQLSMKASLENSLEE 70 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 333333444444444444444333333
No 53
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=76.11 E-value=12 Score=30.54 Aligned_cols=37 Identities=19% Similarity=0.282 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 167 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKS 203 (465)
Q Consensus 167 e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~ 203 (465)
-...|++..+.+..+++.++++...+..++.+++..+
T Consensus 66 ~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l 102 (107)
T 1fxk_A 66 LTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444666666666777777777777777666666544
No 54
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=75.42 E-value=23 Score=28.62 Aligned_cols=42 Identities=17% Similarity=0.279 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 162 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKS 203 (465)
Q Consensus 162 e~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~ 203 (465)
+|+.+..+.|--|..-|..||..+..-+..++..+.+++.|+
T Consensus 33 ~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeEl 74 (77)
T 2w83_C 33 NDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEEL 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555555444
No 55
>3opc_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, chaperone; HET: MSE; 2.09A {Bordetella pertussis}
Probab=74.89 E-value=42 Score=29.21 Aligned_cols=109 Identities=14% Similarity=0.186 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHHHhcccccCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHH
Q 012379 136 DVTRDIEAYEACLQRLEGEARDVLSE-ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAEL---------KELELKSKR 205 (465)
Q Consensus 136 ~~~~E~d~Y~~fL~~L~~~~~~~~~e-e~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el---------~~le~e~~~ 205 (465)
.++.|.+.|..++.-|+.+.. .+.. -++ ..+..+-++...+..+|..++.++.++-+++ .++-..
T Consensus 12 ~L~~~~~~l~~L~~lL~~E~~-~L~~~~d~-~~L~~i~~~K~~ll~~L~~~~~~R~~~l~~lgl~~~~~g~~~~~~~--- 86 (154)
T 3opc_A 12 CLERENALVVEFLHALEAETE-ALMDRRAH-ESLQAAVQRKETLADDLAQLGAERDALLSGAGLASGPAGTDAAAAA--- 86 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChhHHHHHHHh---
Confidence 345567778888887776542 1222 222 3566777888888888888888888775432 111111
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhh
Q 012379 206 FKELEERYWQEFNNFQFQLIAHQEERDA-ISSKIEVSQAHLELLKR 250 (465)
Q Consensus 206 L~~~E~~~w~e~n~~q~ql~~~~~e~~s-l~~q~~~~~~~LdkL~k 250 (465)
...=...|.....+-.+..+.-+.... +..++.+.+.-|+-|+.
T Consensus 87 -~~~l~~~w~~l~~l~~~c~~~N~~Ng~Li~~~l~~~~~~L~~L~~ 131 (154)
T 3opc_A 87 -HPELGPLWQALQANAAQAREHNQRNGTLIAVNLRHTQESLDALRQ 131 (154)
T ss_dssp -CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred -ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111135788877776666554443333 34567777877888873
No 56
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=74.46 E-value=29 Score=28.17 Aligned_cols=31 Identities=26% Similarity=0.443 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 176 RKLEAAIEETEKQNAEVNAELKELELKSKRF 206 (465)
Q Consensus 176 ~~L~~eL~~LE~e~~~l~~el~~le~e~~~L 206 (465)
.+|..-+..|+.|.++++..+..++.+.++|
T Consensus 42 ~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL 72 (78)
T 3iv1_A 42 QKLEEMVTRLDQEVAEVDKNIELLKKKDEEL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555544444
No 57
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=74.25 E-value=39 Score=31.19 Aligned_cols=79 Identities=15% Similarity=0.119 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHhHHHHHHHHHHHHHHH
Q 012379 164 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEER----------YWQEFNNFQFQLIAHQEERDA 233 (465)
Q Consensus 164 l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~----------~w~e~n~~q~ql~~~~~e~~s 233 (465)
+.+-...|..+..++..+++.||++...++.++..++.+...+++.+.. .--.-..+..|+.++..+-.+
T Consensus 47 l~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~k~~e~~~~~~~~~~diD~~v~~~~~l~~Qll~l~Aed~A 126 (174)
T 2p22_A 47 IARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRAKVQQFSSTSHVDDEDVNSIAVAKTDGLNQLYNLVAQDYA 126 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTSSCCCSSCGGGTEECSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCChhhhhcCCcHHHHHHHHHHHHHHH
Confidence 3444455677777788888888888888888888887755555433311 000112344667766666666
Q ss_pred HHHHHHHHH
Q 012379 234 ISSKIEVSQ 242 (465)
Q Consensus 234 l~~q~~~~~ 242 (465)
++.-+-+..
T Consensus 127 ieDaIy~L~ 135 (174)
T 2p22_A 127 LTDTIECLS 135 (174)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 655544443
No 58
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=73.74 E-value=41 Score=28.62 Aligned_cols=56 Identities=7% Similarity=-0.015 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 012379 167 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQF 222 (465)
Q Consensus 167 e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ 222 (465)
=+..|+........++..++.+.+....++.+...+.+.++.+.++...++.....
T Consensus 75 fi~~L~~~I~~q~~~l~~~~~~~e~~r~~l~~a~~~~k~~e~L~er~~~~~~~~~~ 130 (150)
T 3ajw_A 75 FIQTLEKAIEQHRLQLTQWTQKVDLALKSWREKKQRLQAWQTLQDRQTAAALLAEN 130 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777788888888888888888888888888888877776666654443
No 59
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=73.62 E-value=28 Score=28.30 Aligned_cols=24 Identities=25% Similarity=0.494 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 178 LEAAIEETEKQNAEVNAELKELEL 201 (465)
Q Consensus 178 L~~eL~~LE~e~~~l~~el~~le~ 201 (465)
+.+.|+++|.+...++..+..++.
T Consensus 11 ~~~klq~~E~rN~~Le~~v~~le~ 34 (79)
T 3cvf_A 11 TQQKVQDLETRNAELEHQLRAMER 34 (79)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHH
Confidence 333444444444444444444433
No 60
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=73.39 E-value=39 Score=28.14 Aligned_cols=49 Identities=14% Similarity=0.253 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 012379 178 LEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIA 226 (465)
Q Consensus 178 L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~ 226 (465)
+...++.++....+++.++.+|..+...++.+=+.+-..+...+..+.+
T Consensus 28 ~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee 76 (101)
T 3u1c_A 28 AEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLF 76 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555566666666666666666555544433444444444444433
No 61
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=72.93 E-value=11 Score=37.43 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 179 EAAIEETEKQNAEVNAELKELELKS 203 (465)
Q Consensus 179 ~~eL~~LE~e~~~l~~el~~le~e~ 203 (465)
.++++.|+.+.+++.+|+.+|+.+.
T Consensus 184 ~~eie~L~~~~~~L~eEi~~Le~~~ 208 (315)
T 2ve7_A 184 AFKLESLEAKNRALNEQIARLEQER 208 (315)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666666665443
No 62
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=72.90 E-value=14 Score=30.20 Aligned_cols=41 Identities=17% Similarity=0.405 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 166 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 206 (465)
Q Consensus 166 ~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L 206 (465)
+|+.++...-..+..+|.+.|+...+|..|++.++.+.++|
T Consensus 31 EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 31 REMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455666666777777766666666665554
No 63
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=72.64 E-value=56 Score=29.61 Aligned_cols=32 Identities=13% Similarity=0.109 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012379 219 NFQFQLIAHQEERDAISSKIEVSQAHLELLKR 250 (465)
Q Consensus 219 ~~q~ql~~~~~e~~sl~~q~~~~~~~LdkL~k 250 (465)
.++.....++.+..-....++..+.||..|+.
T Consensus 112 ~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~ 143 (154)
T 2ocy_A 112 AIEILNKRLTEQLREKDTLLDTLTLQLKNLKK 143 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444455566667777777764
No 64
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=71.24 E-value=48 Score=28.32 Aligned_cols=9 Identities=33% Similarity=0.648 Sum_probs=3.7
Q ss_pred HHHHHHHHh
Q 012379 144 YEACLQRLE 152 (465)
Q Consensus 144 Y~~fL~~L~ 152 (465)
|...+..|+
T Consensus 18 ye~~I~~LR 26 (119)
T 3ol1_A 18 YEEEMRELR 26 (119)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
No 65
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=71.24 E-value=1.7 Score=46.79 Aligned_cols=6 Identities=0% Similarity=0.390 Sum_probs=2.6
Q ss_pred HHHHHH
Q 012379 128 DKLDKE 133 (465)
Q Consensus 128 e~L~~q 133 (465)
++|+.|
T Consensus 303 qqm~~~ 308 (575)
T 2i1j_A 303 QQMKAQ 308 (575)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 344444
No 66
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=70.37 E-value=28 Score=28.12 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 012379 166 KEKLKIEEEERKLEAAIEETEKQ 188 (465)
Q Consensus 166 ~e~~~Le~EE~~L~~eL~~LE~e 188 (465)
+|+..|+.+...|++++..|+.+
T Consensus 22 rEle~le~~Ie~LE~~i~~le~~ 44 (89)
T 2lw1_A 22 RELEQLPQLLEDLEAKLEALQTQ 44 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433
No 67
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=70.20 E-value=61 Score=33.53 Aligned_cols=24 Identities=17% Similarity=0.227 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 128 DKLDKEVDDVTRDIEAYEACLQRL 151 (465)
Q Consensus 128 e~L~~qle~~~~E~d~Y~~fL~~L 151 (465)
+.+-++++.+..+...|...++..
T Consensus 44 E~~l~elsn~ts~v~~Lvk~iq~~ 67 (409)
T 1m1j_C 44 EGLLQQATNSTGSIEYLIQHIKTI 67 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333445555555666666666554
No 68
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=70.15 E-value=58 Score=34.78 Aligned_cols=26 Identities=23% Similarity=0.311 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 181 AIEETEKQNAEVNAELKELELKSKRF 206 (465)
Q Consensus 181 eL~~LE~e~~~l~~el~~le~e~~~L 206 (465)
.++.+|.+.+++++||...++-..++
T Consensus 315 p~~~Aer~~e~a~ael~~a~k~~a~~ 340 (551)
T 2b5u_A 315 PVEAAERNYERARAELNQANEDVARN 340 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666666554444333
No 69
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=70.06 E-value=40 Score=27.37 Aligned_cols=44 Identities=20% Similarity=0.267 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 166 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKEL 209 (465)
Q Consensus 166 ~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~ 209 (465)
..++.+|.+-..|+..+..++.+.+.-..+...++.|.+.+-+.
T Consensus 13 ~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~ 56 (79)
T 3cvf_A 13 QKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQL 56 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666677777777777666666666666666555433
No 70
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=69.30 E-value=70 Score=29.39 Aligned_cols=67 Identities=15% Similarity=0.249 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 129 KLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELEL 201 (465)
Q Consensus 129 ~L~~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~ 201 (465)
.|++|++++..-+.+=..--.++++.. .++.+....++..-++|...+..|+..+..|++++..|+.
T Consensus 10 ~LekQL~E~n~kLk~EsE~~~rlkK~~------tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa 76 (168)
T 3o0z_A 10 QLQKQLEEANDLLRTESDTAVRLRKSH------TEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQA 76 (168)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777666666555555555432 2333444444555555555555555555555555555543
No 71
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=69.07 E-value=48 Score=27.41 Aligned_cols=49 Identities=22% Similarity=0.232 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 012379 178 LEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIA 226 (465)
Q Consensus 178 L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~ 226 (465)
+..+++.++....+++.++..|..+...++..=+.+-..+...+..+..
T Consensus 28 ~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~ 76 (101)
T 3u59_A 28 AEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQ 76 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555566666666666665555544433344444444444433
No 72
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=68.92 E-value=58 Score=28.34 Aligned_cols=13 Identities=15% Similarity=0.095 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHH
Q 012379 137 VTRDIEAYEACLQ 149 (465)
Q Consensus 137 ~~~E~d~Y~~fL~ 149 (465)
++.||..-...|+
T Consensus 19 Aq~ECrN~T~lLq 31 (121)
T 3mq7_A 19 AVMEARNVTHLLQ 31 (121)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHH
Confidence 3455555555553
No 73
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=68.47 E-value=57 Score=28.05 Aligned_cols=70 Identities=20% Similarity=0.210 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 012379 179 EAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTN 252 (465)
Q Consensus 179 ~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~LdkL~ktN 252 (465)
++.|..-..++.++.+++...++..+...-++.+.---..+|+.+ ...|.-+....+..+.+|..|++-|
T Consensus 37 EeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aE----RadREkl~~eKe~L~~ql~~Lq~q~ 106 (110)
T 2v4h_A 37 EEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAE----RHAREKLVEKKEYLQEQLEQLQREF 106 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc----hhhHHHHHhHHHHHHHHHHHHHHHH
Confidence 333444444444444444444443333332322222222233332 2234456666777777888887654
No 74
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=68.15 E-value=64 Score=28.49 Aligned_cols=59 Identities=19% Similarity=0.234 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 128 DKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEV 192 (465)
Q Consensus 128 e~L~~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l 192 (465)
+.+..+-+.+..+.+.|..-+..+... .+++..+...|+..-..|..+++.+..+.+.+
T Consensus 25 ~~l~~eN~~Lk~e~e~l~~~~~~~~~~------~~eL~~~~~~Le~~n~~L~~~lke~~~~~~~l 83 (155)
T 2oto_A 25 IRLRHENKDLKARLENAMEVAGRDFKR------AEELEKAKQALEDQRKDLETKLKELQQDYDLA 83 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666667777777776555544322 13344455556666666666666666555444
No 75
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=68.11 E-value=29 Score=30.24 Aligned_cols=18 Identities=28% Similarity=0.327 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 012379 229 EERDAISSKIEVSQAHLE 246 (465)
Q Consensus 229 ~e~~sl~~q~~~~~~~Ld 246 (465)
++-..|..+|.-....||
T Consensus 71 ~eY~~L~KkYk~~~~~Ld 88 (119)
T 2avr_X 71 SQYQELASKYEDALKKLE 88 (119)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444455555555544
No 76
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=67.92 E-value=16 Score=30.18 Aligned_cols=44 Identities=18% Similarity=0.261 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhHHH
Q 012379 178 LEAAIEETEKQNAEVNAELKELELKSKRF-----KELEERYWQEFNNFQ 221 (465)
Q Consensus 178 L~~eL~~LE~e~~~l~~el~~le~e~~~L-----~~~E~~~w~e~n~~q 221 (465)
|..++..|+.+..++++++..++.+..+. -+.=-+..++||+.+
T Consensus 6 L~~~i~~L~~q~~~L~~ei~~~~a~L~~~~~~~~~~~hI~~Lh~YNeiK 54 (85)
T 3viq_B 6 LESRVHLLEQQKEQLESSLQDALAKLKNRDAKQTVQKHIDLLHTYNEIR 54 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhHHH
Confidence 34444444444444444444444332221 011114567777765
No 77
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=67.64 E-value=26 Score=28.86 Aligned_cols=38 Identities=8% Similarity=0.182 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 171 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKE 208 (465)
Q Consensus 171 Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~ 208 (465)
-...+..+..+.+.|+++.+.|..++..|+.|...|..
T Consensus 34 rk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ 71 (87)
T 1hjb_A 34 AKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRN 71 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566778888888888888888888877766643
No 78
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=66.16 E-value=4.8 Score=43.27 Aligned_cols=19 Identities=11% Similarity=0.407 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 012379 135 DDVTRDIEAYEACLQRLEG 153 (465)
Q Consensus 135 e~~~~E~d~Y~~fL~~L~~ 153 (465)
+++++++..|..-|..++.
T Consensus 331 ~~~~~~~~~~~~~~~~~~~ 349 (575)
T 2i1j_A 331 ERAEKKQQEYQDRLRQMQE 349 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHH
Confidence 3455666666665555543
No 79
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=66.13 E-value=64 Score=27.73 Aligned_cols=32 Identities=13% Similarity=0.091 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 012379 122 CMRVLSDKLDKEVDDVTRDIEAYEACLQRLEG 153 (465)
Q Consensus 122 C~d~Lle~L~~qle~~~~E~d~Y~~fL~~L~~ 153 (465)
.....+..|++++..+..+++.|..++..|+.
T Consensus 32 e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq 63 (111)
T 2v66_B 32 QSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQ 63 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666777777777777777777777764
No 80
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=65.66 E-value=32 Score=33.50 Aligned_cols=30 Identities=13% Similarity=0.214 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012379 221 QFQLIAHQEERDAISSKIEVSQAHLELLKR 250 (465)
Q Consensus 221 q~ql~~~~~e~~sl~~q~~~~~~~LdkL~k 250 (465)
+.++...+.++.++++++..++.+|+.++.
T Consensus 121 ~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~ 150 (369)
T 4dk0_A 121 KATLNNAKAEMDVVQENIKQAEIEVNTAET 150 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555666666666666666554
No 81
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=65.43 E-value=26 Score=33.86 Aligned_cols=28 Identities=25% Similarity=0.340 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012379 222 FQLIAHQEERDAISSKIEVSQAHLELLK 249 (465)
Q Consensus 222 ~ql~~~~~e~~sl~~q~~~~~~~LdkL~ 249 (465)
.++...+.++.++++++..++.+|+.++
T Consensus 121 ~~~~~~~a~l~~~~a~l~~a~a~l~~a~ 148 (341)
T 3fpp_A 121 TEMAVKQAQIGTIDAQIKRNQASLDTAK 148 (341)
T ss_dssp HHHHHTHHHHHHHHHHHHHTHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455566666666666665543
No 82
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=64.92 E-value=52 Score=26.27 Aligned_cols=39 Identities=18% Similarity=0.275 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 168 KLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 206 (465)
Q Consensus 168 ~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L 206 (465)
++.+|.+-..|+..+..++...+.-..+...++.|.+.+
T Consensus 9 Lq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~ 47 (72)
T 3cve_A 9 LQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTL 47 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444555555444444444344444443333
No 83
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=64.49 E-value=19 Score=36.96 Aligned_cols=12 Identities=17% Similarity=-0.011 Sum_probs=6.0
Q ss_pred CChHHHHHHHHH
Q 012379 282 VEWDEINAAWGQ 293 (465)
Q Consensus 282 V~W~EINAAwGQ 293 (465)
..=.||=...++
T Consensus 120 ~~Q~~Vf~~v~~ 131 (403)
T 4etp_A 120 DTNVDVFKEVGQ 131 (403)
T ss_dssp CCHHHHHHHHHH
T ss_pred CchHHHHHHHHH
Confidence 344555555554
No 84
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=63.85 E-value=21 Score=26.99 Aligned_cols=35 Identities=20% Similarity=0.225 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 173 EEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 207 (465)
Q Consensus 173 ~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~ 207 (465)
.....|+.+.+.|+.+..+|..++..|+.|...|.
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666666666666666666655554
No 85
>2fup_A Hypothetical protein PA3352; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.48A {Pseudomonas aeruginosa} SCOP: a.47.5.1
Probab=63.77 E-value=30 Score=29.80 Aligned_cols=114 Identities=14% Similarity=0.109 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHH
Q 012379 136 DVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAEL---------KELELKSKRF 206 (465)
Q Consensus 136 ~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el---------~~le~e~~~L 206 (465)
.+.++++.|..++.-++.+.. .+..-+ ...+..+-+++..+..+|..++.++.++.+.+ .++-.. ...
T Consensus 11 ~L~~~~~~l~~L~~lL~~E~~-~L~~~d-~~~L~~i~~~k~~ll~~L~~~~~~R~~~l~~lg~~~~~~~~~~l~~~-~~~ 87 (157)
T 2fup_A 11 LFAEDIGHANQLLQLVDEEFQ-ALERRE-LPVLQQLLGAKQPLMQQLERNGRARAEILREAGVSLDREGLARYARE-RAD 87 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHTTC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHTT-CTT
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHhc-ccc
Confidence 345677778888887776531 111111 12666778888889999999999988775543 111000 001
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcc
Q 012379 207 KELEERYWQEFNNFQFQLIAHQEERDAI-SSKIEVSQAHLELLKRTN 252 (465)
Q Consensus 207 ~~~E~~~w~e~n~~q~ql~~~~~e~~sl-~~q~~~~~~~LdkL~ktN 252 (465)
...=...|+.....-.++.+.-+....+ ..++++.+.-|+-|+..+
T Consensus 88 ~~~l~~~~~~l~~l~~~~~~~N~~Ng~Li~~~l~~~~~~L~~L~~~~ 134 (157)
T 2fup_A 88 GAELLARGDELGELLERCQQANLRNGRIIRANQASTGSLLNILRGQD 134 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC--CTTHHHHHHHHHHC---
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 1111357887777766665544433333 456778888888887643
No 86
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=63.32 E-value=41 Score=35.64 Aligned_cols=37 Identities=19% Similarity=0.282 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 166 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELK 202 (465)
Q Consensus 166 ~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e 202 (465)
.++..|.++.+++..++++|+.++.++.++|.++...
T Consensus 70 ~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~ 106 (501)
T 1wle_A 70 PGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVN 106 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4566788888889999999999999999988876543
No 87
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=62.44 E-value=68 Score=32.64 Aligned_cols=60 Identities=22% Similarity=0.321 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 012379 167 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDA 233 (465)
Q Consensus 167 e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~s 233 (465)
|+..|...-+.|...|++++..+.+++++|+...+....++ ++.|.++-++..+...+|.
T Consensus 199 e~~~~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-------~~~~~lkp~l~ql~k~rd~ 258 (373)
T 3hhm_B 199 EIQRIMHNYDKLKSRISEIIDSRRRLEEDLKKQAAEYREID-------KRMNSIKPDLIQLRKTRDQ 258 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhhccChHHHHHHHHHHH
Confidence 33445555555666666666666666665554443333332 5566666666555554443
No 88
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=61.19 E-value=74 Score=31.74 Aligned_cols=74 Identities=18% Similarity=0.254 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHhcccccCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 126 LSDKLDKEVDDVTR---DIEAYEACLQRLEGEARDVL-SEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKEL 199 (465)
Q Consensus 126 Lle~L~~qle~~~~---E~d~Y~~fL~~L~~~~~~~~-~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~l 199 (465)
-.++|+.++..+++ ...+|...|.+|..+....+ +..++...++...+.|+++..+-.++...+.+|+.+|+.|
T Consensus 25 ~~eql~~~i~~L~~~ap~W~~aq~al~rL~eq~g~~~~ds~~v~~~mq~~Le~Ere~~~~Rd~~a~~k~~Le~~ierL 102 (302)
T 3ibp_A 25 EQEQLQSRIQSLMQRAPVWLAAQNSLNQLSEQCGEEFTSSQDVTEYLQQLLEREREAIVERDEVGARKNAVDEEIERL 102 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666655 34456778888876542222 3456666664433333555555555555555555555554
No 89
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=60.74 E-value=1.8e+02 Score=31.23 Aligned_cols=17 Identities=6% Similarity=0.184 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHhhc
Q 012379 235 SSKIEVSQAHLELLKRT 251 (465)
Q Consensus 235 ~~q~~~~~~~LdkL~kt 251 (465)
.++....+++++.|++.
T Consensus 566 ~~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 566 QKESRIMKNEIQDLQTK 582 (592)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 35556666777777776
No 90
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=59.70 E-value=88 Score=27.21 Aligned_cols=29 Identities=21% Similarity=0.399 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 179 EAAIEETEKQNAEVNAELKELELKSKRFK 207 (465)
Q Consensus 179 ~~eL~~LE~e~~~l~~el~~le~e~~~L~ 207 (465)
.+.+++|+.|...++++|.++.++.++|.
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr 98 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLR 98 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466666666666666666665555553
No 91
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=59.61 E-value=37 Score=35.39 Aligned_cols=90 Identities=14% Similarity=0.231 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 164 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQA 243 (465)
Q Consensus 164 l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~ 243 (465)
+..++..|.++.+++..++++|..++.++.++|..+....++. ++...+...+..++.+++++...++.++....
T Consensus 29 ~~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 103 (455)
T 2dq0_A 29 WVDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPV----DELLAKSREIVKRIGELENEVEELKKKIDYYL- 103 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCT----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3466777888888899999999999999988888764322111 12333344444444444444444444333222
Q ss_pred HHHHHhhcccCCCceeeee
Q 012379 244 HLELLKRTNVLNDAFPIWH 262 (465)
Q Consensus 244 ~LdkL~ktNV~Nd~F~I~h 262 (465)
|+==|+..+.=+++.
T Consensus 104 ----~~ipN~~~~~vP~g~ 118 (455)
T 2dq0_A 104 ----WRLPNITHPSVPVGK 118 (455)
T ss_dssp ----TTSCCCCCTTSCCCS
T ss_pred ----HhCCCCCCccCCCCC
Confidence 233466666555554
No 92
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=59.08 E-value=24 Score=36.38 Aligned_cols=30 Identities=27% Similarity=0.270 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 171 IEEEERKLEAAIEETEKQNAEVNAELKELE 200 (465)
Q Consensus 171 Le~EE~~L~~eL~~LE~e~~~l~~el~~le 200 (465)
|+.|..++.+++++++++.+++.+++++++
T Consensus 8 l~~el~~~~~~~~~l~~~~~~~~~~~~~~~ 37 (412)
T 3u06_A 8 LSTEVVHLRQRTEELLRCNEQQAAELETCK 37 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444443
No 93
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=58.66 E-value=13 Score=24.51 Aligned_cols=26 Identities=31% Similarity=0.390 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 182 IEETEKQNAEVNAELKELELKSKRFK 207 (465)
Q Consensus 182 L~~LE~e~~~l~~el~~le~e~~~L~ 207 (465)
-+.||+.++.++..+..|+.+++.|+
T Consensus 3 wealekkcaalesklqalekkleale 28 (31)
T 3ljm_A 3 WEALEKKCAALESKLQALEKKLEALE 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777777777776655553
No 94
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=58.58 E-value=19 Score=26.05 Aligned_cols=29 Identities=14% Similarity=0.354 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 178 LEAAIEETEKQNAEVNAELKELELKSKRF 206 (465)
Q Consensus 178 L~~eL~~LE~e~~~l~~el~~le~e~~~L 206 (465)
|.+.+..+.+|.+..+++|.+++.+...|
T Consensus 7 l~qkI~kVdrEI~Kte~kI~~lqkKlkeL 35 (42)
T 2l5g_B 7 LIQNMDRVDREITMVEQQISKLKKKQQQL 35 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555444433
No 95
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=58.09 E-value=66 Score=33.98 Aligned_cols=37 Identities=8% Similarity=0.076 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 165 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELEL 201 (465)
Q Consensus 165 ~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~ 201 (465)
..++..|.++.+++..++++|..++.++.++|..+..
T Consensus 36 ~d~~~~ld~~~r~~~~~~~~l~~~rN~~sk~i~~~~~ 72 (484)
T 3lss_A 36 VDAIIEADKKWRRTQFLTEASKKLINICSKAVGAKKK 72 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556677888888889999999999988888877654
No 96
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=57.76 E-value=30 Score=26.36 Aligned_cols=33 Identities=15% Similarity=0.360 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 175 ERKLEAAIEETEKQNAEVNAELKELELKSKRFK 207 (465)
Q Consensus 175 E~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~ 207 (465)
...|..+.+.|+.+...|..++..|+.+...|.
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666665555443
No 97
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=57.60 E-value=59 Score=28.29 Aligned_cols=14 Identities=36% Similarity=0.396 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 012379 233 AISSKIEVSQAHLE 246 (465)
Q Consensus 233 sl~~q~~~~~~~Ld 246 (465)
.+-.+|.-...+|+
T Consensus 75 ~l~k~Y~~~~keLd 88 (119)
T 3etw_A 75 ELASKYEDALKKLE 88 (119)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
No 98
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=56.95 E-value=37 Score=27.32 Aligned_cols=38 Identities=11% Similarity=0.202 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 170 KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 207 (465)
Q Consensus 170 ~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~ 207 (465)
+-...+..+..+..+|+++...|..++..|+.|...|.
T Consensus 33 krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 33 KAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566778888899999999988888888776664
No 99
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=56.67 E-value=44 Score=26.74 Aligned_cols=8 Identities=25% Similarity=0.422 Sum_probs=3.5
Q ss_pred HHHHHHHh
Q 012379 242 QAHLELLK 249 (465)
Q Consensus 242 ~~~LdkL~ 249 (465)
+.+||+++
T Consensus 60 qseLDKfr 67 (72)
T 3nmd_A 60 QNELDKYR 67 (72)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhh
Confidence 33444443
No 100
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=56.35 E-value=95 Score=26.51 Aligned_cols=44 Identities=11% Similarity=0.312 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 012379 179 EAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQF 222 (465)
Q Consensus 179 ~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ 222 (465)
.++|.+...+.+++.+++..++.....++.+-.-|+..+.+.+.
T Consensus 10 ~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIEi 53 (106)
T 4e61_A 10 QAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIEI 53 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555666666666666665555555555544443
No 101
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=55.80 E-value=76 Score=29.90 Aligned_cols=6 Identities=17% Similarity=0.479 Sum_probs=2.8
Q ss_pred hHHHHH
Q 012379 119 CLECMR 124 (465)
Q Consensus 119 C~eC~d 124 (465)
|.+|++
T Consensus 130 ~~~~~~ 135 (213)
T 1ik9_A 130 ALDTIA 135 (213)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 455543
No 102
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=55.74 E-value=54 Score=27.73 Aligned_cols=35 Identities=20% Similarity=0.197 Sum_probs=22.0
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 012379 115 EQPLCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEG 153 (465)
Q Consensus 115 DhPLC~eC~d~Lle~L~~qle~~~~E~d~Y~~fL~~L~~ 153 (465)
+.|++.+ =+..+.++++.+++|++...+..+.|+.
T Consensus 6 ~~~~~~e----~~~~lr~ei~~Le~E~~rLr~~~~~LE~ 40 (100)
T 1go4_E 6 SFLFSRE----EADTLRLKVEELEGERSRLEEEKRMLEA 40 (100)
T ss_dssp ---CHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcchH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455444 4555777778888888887777776653
No 103
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=54.95 E-value=65 Score=28.63 Aligned_cols=12 Identities=25% Similarity=0.357 Sum_probs=0.4
Q ss_pred HHHHHHHHHHHh
Q 012379 238 IEVSQAHLELLK 249 (465)
Q Consensus 238 ~~~~~~~LdkL~ 249 (465)
++..+.||..|+
T Consensus 119 l~~lq~QL~~LK 130 (135)
T 2e7s_A 119 LDTLTLQLKNLK 130 (135)
T ss_dssp C-----------
T ss_pred HHHHHHHHHHHH
Confidence 344445555544
No 104
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=54.58 E-value=99 Score=26.19 Aligned_cols=82 Identities=11% Similarity=0.226 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----cc--------------CCC--------------HHHHHHHHHHHH
Q 012379 125 VLSDKLDKEVDDVTRDIEAYEACLQRLEGEA----RD--------------VLS--------------EADFLKEKLKIE 172 (465)
Q Consensus 125 ~Lle~L~~qle~~~~E~d~Y~~fL~~L~~~~----~~--------------~~~--------------ee~l~~e~~~Le 172 (465)
..++.+..++..+......|..+++.|+.-. .+ ..+ +-++.+...-++
T Consensus 15 ~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~~~~~~~~lvplg~~~yv~a~i~~~~~V~v~lG~g~~vE~~~~eA~~~l~ 94 (133)
T 1fxk_C 15 SQVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVAIKKNFEDAMESIK 94 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEEEETTEEEEEECCSTTEEEEEEETTEEEEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCeEEEEcCCCcEEEEEECCCCEEEEEcCCCEEEEeeHHHHHHHHH
Confidence 3455666666666777777777776554311 00 000 011334444566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 173 EEERKLEAAIEETEKQNAEVNAELKELELKSKRF 206 (465)
Q Consensus 173 ~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L 206 (465)
.-.+.+...++.++++.+.+.+++..++.++.++
T Consensus 95 ~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~ 128 (133)
T 1fxk_C 95 SQKNELESTLQKMGENLRAITDIMMKLSPQAEEL 128 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666677777777777777777777766655444
No 105
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=54.49 E-value=82 Score=27.62 Aligned_cols=112 Identities=17% Similarity=0.269 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 129 KLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLK-EKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 207 (465)
Q Consensus 129 ~L~~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~-e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~ 207 (465)
.|...+..++++...+..-++.+.....+....+-+.. -...|+..+.+| ..|++|.....+++.++..|+.++..++
T Consensus 10 ~l~~KvAElekkv~~lek~lk~~~e~d~e~y~ke~~~~~~qsele~k~aeL-e~leeL~~ki~eL~~kvA~le~e~~~~e 88 (125)
T 2pms_C 10 APQAKIAELENQVHRLEQELKEIDESESEDYAKEGFRAPLQSKLDAKKAKL-SKLEELSDKIDELDAEIAKLEDQLKAAE 88 (125)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTTTCC------------CHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888888776655433211000010100 011222222222 1235677777777777777777776554
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 208 ELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELL 248 (465)
Q Consensus 208 ~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~LdkL 248 (465)
... .... .-+..++..+..-++.++-.+..|+.+
T Consensus 89 ~~~-----~~~~--~~~e~le~~la~KkAEleKtqa~Ld~a 122 (125)
T 2pms_C 89 ENN-----NVED--YFKEGLEKTIAAKKAELEKTEADLKKA 122 (125)
T ss_dssp C---------CH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcc-----cchH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 311 0111 113333444444445555555556543
No 106
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=54.24 E-value=28 Score=28.90 Aligned_cols=12 Identities=42% Similarity=0.376 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 012379 227 HQEERDAISSKI 238 (465)
Q Consensus 227 ~~~e~~sl~~q~ 238 (465)
+..|++.+..+|
T Consensus 74 ~~~e~d~~k~k~ 85 (90)
T 2wt7_B 74 LARERDAYKVKS 85 (90)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333334443333
No 107
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=53.63 E-value=43 Score=34.27 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 012379 180 AAIEETEKQNAEVNAELKELELK 202 (465)
Q Consensus 180 ~eL~~LE~e~~~l~~el~~le~e 202 (465)
.+|+.|+++.+++++++++++.+
T Consensus 10 ~~~~~l~~~~~~l~~~~~~~~~~ 32 (403)
T 4etp_A 10 EKIAALKEKIAALKEKIKDTELG 32 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444333
No 108
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=53.39 E-value=99 Score=25.87 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 012379 227 HQEERDAISSKIEVSQAHLELLK 249 (465)
Q Consensus 227 ~~~e~~sl~~q~~~~~~~LdkL~ 249 (465)
...+...|..++.+.+.++.+|.
T Consensus 66 l~~eKe~L~~ql~~lq~q~~~L~ 88 (94)
T 3jsv_C 66 LVEKKEYLQEQLEQLQREFNKLK 88 (94)
T ss_dssp HHHTTSHHHHHHHHHHHTTC---
T ss_pred HHhHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666666666555554
No 109
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=53.07 E-value=1.3e+02 Score=27.16 Aligned_cols=20 Identities=15% Similarity=0.199 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 012379 220 FQFQLIAHQEERDAISSKIE 239 (465)
Q Consensus 220 ~q~ql~~~~~e~~sl~~q~~ 239 (465)
++.++.+-..-++++..|+.
T Consensus 120 L~~ql~e~~~~l~~lq~ql~ 139 (154)
T 2ocy_A 120 LTEQLREKDTLLDTLTLQLK 139 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433
No 110
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=52.91 E-value=13 Score=27.78 Aligned_cols=28 Identities=18% Similarity=0.223 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 169 LKIEEEERKLEAAIEETEKQNAEVNAEL 196 (465)
Q Consensus 169 ~~Le~EE~~L~~eL~~LE~e~~~l~~el 196 (465)
+.|..|-.+|.+++++|.++.+++.+++
T Consensus 22 eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666666666555544
No 111
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=52.68 E-value=59 Score=34.37 Aligned_cols=88 Identities=17% Similarity=0.153 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 165 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAH 244 (465)
Q Consensus 165 ~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~ 244 (465)
..++..|.++.+++..++++|..++.++.++|..+....++. +....+...+. ++...++.++.....+
T Consensus 32 ~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~----~~l~~~~~~l~-------~~i~~le~~~~~~~~~ 100 (485)
T 3qne_A 32 VDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDA----KDLIAEKEKLS-------NEKKEIIEKEAEADKN 100 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC----HHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccH----HHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 456667778888888888888888888888887764422111 11223333333 4444444444444444
Q ss_pred HHHH--hhcccCCCceeeeec
Q 012379 245 LELL--KRTNVLNDAFPIWHD 263 (465)
Q Consensus 245 LdkL--~ktNV~Nd~F~I~hd 263 (465)
|+.+ +==|+..+.=+|+-|
T Consensus 101 ~~~~l~~iPN~~~~~vP~g~~ 121 (485)
T 3qne_A 101 LRSKINQVGNIVHESVVDSQD 121 (485)
T ss_dssp HHHHHTTSCCCCCTTSCCCSC
T ss_pred HHHHHHhCCCCCCccCCCCCC
Confidence 4322 224777777677644
No 112
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=52.20 E-value=30 Score=23.11 Aligned_cols=22 Identities=14% Similarity=0.282 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 012379 185 TEKQNAEVNAELKELELKSKRF 206 (465)
Q Consensus 185 LE~e~~~l~~el~~le~e~~~L 206 (465)
|.+|.+.+..||..|+-|+..|
T Consensus 7 lkqeiaalkkeiaalkfeiaal 28 (33)
T 4dzn_A 7 LKQEIAALKKEIAALKFEIAAL 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444333
No 113
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=51.44 E-value=2.2e+02 Score=30.24 Aligned_cols=29 Identities=21% Similarity=0.236 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHhc
Q 012379 125 VLSDKLDKEVDDVTRDIE----AYEACLQRLEG 153 (465)
Q Consensus 125 ~Lle~L~~qle~~~~E~d----~Y~~fL~~L~~ 153 (465)
.-|..+++++..+++... +|+.-|...+.
T Consensus 9 ~~la~yq~elarvqkana~aka~Ye~~~ae~~a 41 (497)
T 3iox_A 9 AKLTAYQTELARVQKANADAKAAYEAAVAANNA 41 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345667777777766443 46666665543
No 114
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=51.11 E-value=29 Score=29.41 Aligned_cols=34 Identities=6% Similarity=0.130 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 175 ERKLEAAIEETEKQNAEVNAELKELELKSKRFKE 208 (465)
Q Consensus 175 E~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~ 208 (465)
...|.+||+.|+.+...|++.|..++..++.+.+
T Consensus 8 ~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lte 41 (106)
T 2aze_B 8 LEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSE 41 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456666777777777777777777666666543
No 115
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=50.90 E-value=27 Score=29.54 Aligned_cols=32 Identities=28% Similarity=0.395 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 174 EERKLEAAIEETEKQNAEVNAELKELELKSKR 205 (465)
Q Consensus 174 EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~ 205 (465)
+-..|.++|+.|+.|+.+|.+++..||.++..
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777777777777777766543
No 116
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=50.45 E-value=1.3e+02 Score=26.41 Aligned_cols=21 Identities=5% Similarity=-0.035 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 012379 130 LDKEVDDVTRDIEAYEACLQR 150 (465)
Q Consensus 130 L~~qle~~~~E~d~Y~~fL~~ 150 (465)
|+.+.+.+..+...+..-...
T Consensus 34 Lk~e~e~l~~~~~~~~~~~~e 54 (155)
T 2oto_A 34 LKARLENAMEVAGRDFKRAEE 54 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHH
Confidence 555555554444444333333
No 117
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=50.20 E-value=13 Score=24.02 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 012379 184 ETEKQNAEVNAELKELELKSKRF 206 (465)
Q Consensus 184 ~LE~e~~~l~~el~~le~e~~~L 206 (465)
.|.+..+++.+||..|+-|+..|
T Consensus 4 rlkqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 4 RLKQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHHh
Confidence 34445555555555555555444
No 118
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=49.44 E-value=1.1e+02 Score=25.05 Aligned_cols=38 Identities=21% Similarity=0.334 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 170 KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 207 (465)
Q Consensus 170 ~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~ 207 (465)
.|-+|-+.|.-.+.++|.|+.+.+..|++-.+|+..|.
T Consensus 23 ~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq 60 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQ 60 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 46677777888888888888888887777775555543
No 119
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=48.67 E-value=22 Score=26.99 Aligned_cols=34 Identities=21% Similarity=0.304 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 173 EEERKLEAAIEETEKQNAEVNAELKELELKSKRF 206 (465)
Q Consensus 173 ~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L 206 (465)
.....|+.+++.|+.+..+|..++..|+.+...|
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666666667776766666666665544
No 120
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=48.24 E-value=1.2e+02 Score=27.01 Aligned_cols=32 Identities=16% Similarity=0.153 Sum_probs=15.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 160 SEADFLKEKLKIEEEERKLEAAIEETEKQNAE 191 (465)
Q Consensus 160 ~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~ 191 (465)
++++-.+.+.+|++|-+...+++++.-++.+.
T Consensus 86 seeeQ~~ri~~Le~E~~~~~~el~~~v~eae~ 117 (151)
T 1yke_B 86 SAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEK 117 (151)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45554555555555555555544444443333
No 121
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=48.16 E-value=1.3e+02 Score=25.87 Aligned_cols=20 Identities=20% Similarity=0.415 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 012379 124 RVLSDKLDKEVDDVTRDIEA 143 (465)
Q Consensus 124 d~Lle~L~~qle~~~~E~d~ 143 (465)
|.+|+.|+.+++.+..|.+.
T Consensus 14 D~~Ie~Lkreie~lk~ele~ 33 (120)
T 3i00_A 14 DHLIERLYREISGLKAQLEN 33 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56777777777776555544
No 122
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=47.94 E-value=81 Score=30.27 Aligned_cols=24 Identities=8% Similarity=0.137 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 222 FQLIAHQEERDAISSKIEVSQAHL 245 (465)
Q Consensus 222 ~ql~~~~~e~~sl~~q~~~~~~~L 245 (465)
.++...+.++..++++++.++.+|
T Consensus 128 a~l~~~~a~l~~a~a~l~~a~~~l 151 (341)
T 3fpp_A 128 AQIGTIDAQIKRNQASLDTAKTNL 151 (341)
T ss_dssp HHHHHHHHHHHHTHHHHTTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333344444444444444444333
No 123
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=47.86 E-value=1.4e+02 Score=25.96 Aligned_cols=33 Identities=15% Similarity=0.167 Sum_probs=16.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 160 SEADFLKEKLKIEEEERKLEAAIEETEKQNAEV 192 (465)
Q Consensus 160 ~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l 192 (465)
++++-.+.+.+|++|-+...+++++.-++.+.+
T Consensus 86 see~Q~~ri~~L~~E~~~~~~el~~~v~e~e~l 118 (132)
T 1ykh_B 86 SAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKL 118 (132)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455545555555555555555554444444333
No 124
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=47.45 E-value=55 Score=25.01 Aligned_cols=29 Identities=14% Similarity=0.168 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 165 LKEKLKIEEEERKLEAAIEETEKQNAEVN 193 (465)
Q Consensus 165 ~~e~~~Le~EE~~L~~eL~~LE~e~~~l~ 193 (465)
..+...|+.+-..|..++..|+.|...+.
T Consensus 29 e~~~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 29 TGECKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444455555544444443
No 125
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=47.35 E-value=92 Score=32.90 Aligned_cols=27 Identities=30% Similarity=0.471 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCceee
Q 012379 347 DKAMTLFLSCLKDFAEFANSKDQENNIPPDKCFKLPYKI 385 (465)
Q Consensus 347 D~AM~afL~cl~q~~~~~~~~d~~~~~~~~~~~~LPY~I 385 (465)
+.+...|-.++.-..++++. +.|||++
T Consensus 310 e~s~~e~e~ml~~~e~il~~------------LgLpyrv 336 (485)
T 3qne_A 310 EKSWEEFDRMIGCSEEFYQS------------LGLPYRV 336 (485)
T ss_dssp GGHHHHHHHHHHHHHHHHHH------------TTCCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHH------------CCCcEEE
Confidence 56777777776666666543 6778876
No 126
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=46.98 E-value=1e+02 Score=31.59 Aligned_cols=27 Identities=22% Similarity=0.469 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCceee
Q 012379 347 DKAMTLFLSCLKDFAEFANSKDQENNIPPDKCFKLPYKI 385 (465)
Q Consensus 347 D~AM~afL~cl~q~~~~~~~~d~~~~~~~~~~~~LPY~I 385 (465)
+.+...|-.++.-..+++.. +.|||++
T Consensus 289 e~s~~~~~e~~~~~~~il~~------------LGL~~rv 315 (421)
T 1ses_A 289 EASDRAFQELLENAEEILRL------------LELPYRL 315 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHH------------TTCCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHH------------CCCceEE
Confidence 56777666666666666543 6788875
No 127
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=46.82 E-value=1.3e+02 Score=25.62 Aligned_cols=13 Identities=15% Similarity=0.319 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 012379 233 AISSKIEVSQAHL 245 (465)
Q Consensus 233 sl~~q~~~~~~~L 245 (465)
++++++...+.+|
T Consensus 86 alq~KiaeLKrqL 98 (107)
T 2k48_A 86 TLETKLGELKRQL 98 (107)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444333
No 128
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=46.64 E-value=50 Score=34.01 Aligned_cols=33 Identities=9% Similarity=0.071 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 175 ERKLEAAIEETEKQNAEVNAELKELELKSKRFK 207 (465)
Q Consensus 175 E~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~ 207 (465)
...|..||.+++++.++++++++.++.+.+.+.
T Consensus 5 ~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~ 37 (412)
T 3u06_A 5 HAALSTEVVHLRQRTEELLRCNEQQAAELETCK 37 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666666666666655544443
No 129
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=46.27 E-value=2.2e+02 Score=29.56 Aligned_cols=25 Identities=16% Similarity=0.247 Sum_probs=13.6
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHH
Q 012379 127 SDKLDKEVDDV---TRDIEAYEACLQRL 151 (465)
Q Consensus 127 le~L~~qle~~---~~E~d~Y~~fL~~L 151 (465)
|+.|+..++++ ..+...|...|+..
T Consensus 40 l~~L~~~l~~isn~Ts~~~~~v~~ik~~ 67 (411)
T 3ghg_C 40 LQSLEDILHQVENKTSEVKQLIKAIQLT 67 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHh
Confidence 44555555444 44556666666544
No 130
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=46.10 E-value=58 Score=32.67 Aligned_cols=14 Identities=14% Similarity=0.470 Sum_probs=9.8
Q ss_pred CCChHHHHHHHHHH
Q 012379 281 PVEWDEINAAWGQA 294 (465)
Q Consensus 281 ~V~W~EINAAwGQ~ 294 (465)
.-.|.|-=.++|.+
T Consensus 127 ~R~W~~Yk~GFG~~ 140 (323)
T 1lwu_C 127 TRDWVSYREGFGYL 140 (323)
T ss_dssp CCCHHHHHHCEEEE
T ss_pred cCCHHHHhhhhCCc
Confidence 34688877777765
No 131
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=46.06 E-value=1.4e+02 Score=25.59 Aligned_cols=34 Identities=21% Similarity=0.238 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 012379 204 KRFKELEERYWQEFNNFQFQLIAHQEERDAISSK 237 (465)
Q Consensus 204 ~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q 237 (465)
..|.++-..|-+-.++.+.++..+...|..+..+
T Consensus 59 ~~L~~Lqq~fsq~q~~vq~qL~~Lt~~Re~V~~e 92 (112)
T 1x79_B 59 ILLEELQQGLSQAKRDVQEQMAVLMQSREQVSEE 92 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566666677777777766666555443
No 132
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=45.84 E-value=1e+02 Score=32.04 Aligned_cols=28 Identities=11% Similarity=0.408 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCceeee
Q 012379 347 DKAMTLFLSCLKDFAEFANSKDQENNIPPDKCFKLPYKIE 386 (465)
Q Consensus 347 D~AM~afL~cl~q~~~~~~~~d~~~~~~~~~~~~LPY~I~ 386 (465)
+.+...|-.++.-..+++.. +.|||++.
T Consensus 314 e~s~~~~~e~l~~~~~il~~------------LGL~yrv~ 341 (455)
T 2dq0_A 314 EESWEWHEKIIRNAEELFQE------------LEIPYRVV 341 (455)
T ss_dssp TTHHHHHHHHHHHHHHHHHH------------TTCCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHH------------cCCceEEE
Confidence 56777777777666666643 67788764
No 133
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=45.26 E-value=3e+02 Score=29.08 Aligned_cols=19 Identities=21% Similarity=0.219 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHhhcccCCC
Q 012379 238 IEVSQAHLELLKRTNVLND 256 (465)
Q Consensus 238 ~~~~~~~LdkL~ktNV~Nd 256 (465)
|+..+.||+.+..+|+++.
T Consensus 179 Ye~~QKqLeQv~a~dL~p~ 197 (491)
T 1m1j_A 179 YDNIQKHLTQASSIDMHPD 197 (491)
T ss_dssp THHHHHHHHHHTTCCCCCS
T ss_pred HHHHHHHHHHhhccccCCc
Confidence 4556789999999999874
No 134
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=44.99 E-value=1.5e+02 Score=25.37 Aligned_cols=29 Identities=14% Similarity=0.236 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 172 EEEERKLEAAIEETEKQNAEVNAELKELE 200 (465)
Q Consensus 172 e~EE~~L~~eL~~LE~e~~~l~~el~~le 200 (465)
+.|..++...|..|+.+.+.+......|+
T Consensus 35 k~Ei~elrr~iq~L~~el~~l~~~~~~LE 63 (129)
T 3tnu_B 35 KHEISEMNRMIQRLRAEIDNVKKQCANLQ 63 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 33334444444444444444444333333
No 135
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=44.75 E-value=79 Score=24.12 Aligned_cols=35 Identities=23% Similarity=0.329 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 167 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELEL 201 (465)
Q Consensus 167 e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~ 201 (465)
.+.+|++--..|...+..||..+.+.++||..|.+
T Consensus 12 q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~ 46 (58)
T 3a2a_A 12 QLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNK 46 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777788899999999999999888887764
No 136
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=44.75 E-value=1.9e+02 Score=26.54 Aligned_cols=54 Identities=17% Similarity=0.344 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 012379 173 EEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDA 233 (465)
Q Consensus 173 ~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~s 233 (465)
.--+.|...|.+++.....|+.+|+........++ ++.|+++=++..+...+|.
T Consensus 96 ~N~e~LksRL~~l~~sk~~L~e~L~~q~~~~relE-------RemnsLKPeL~qL~K~rD~ 149 (170)
T 3l4q_C 96 LNSERLKSRIAEIHESRTKLEQELRAQASDNREID-------KRMNSLKPDLMQLRKIRDQ 149 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhcCHHHHHHHHHHHH
Confidence 33345666666776666666665555544443333 5677777777666655543
No 137
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=44.50 E-value=1.2e+02 Score=24.17 Aligned_cols=46 Identities=24% Similarity=0.261 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 012379 179 EAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQL 224 (465)
Q Consensus 179 ~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql 224 (465)
...+..+.+|++++.+.++.++.+...+.++|.+.-.....|..++
T Consensus 3 ~k~v~~l~~E~eel~~klk~~~ee~~~~~eee~~~~~~k~~lek~L 48 (71)
T 1uix_A 3 TSDVANLANEKEELNNKLKEAQEQLSRLKDEEISAAAIKAQFEKQL 48 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777777777777666655544333333444443
No 138
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=44.08 E-value=56 Score=33.60 Aligned_cols=86 Identities=15% Similarity=0.161 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 165 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAH 244 (465)
Q Consensus 165 ~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~ 244 (465)
..++..|.++.+++..++++|+.++.++.++|.. . .. +.-++...+...+..++.+++++...++.++..
T Consensus 27 ~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~-~-~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 96 (421)
T 1ses_A 27 LEALLALDREVQELKKRLQEVQTERNQVAKRVPK-A-PP----EEKEALIARGKALGEEAKRLEEALREKEARLEA---- 96 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS-S-CH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h-cc----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 3456667788888888888888888888887765 1 10 011122333333444444433333333333322
Q ss_pred HHHHhhcccCCCceeee
Q 012379 245 LELLKRTNVLNDAFPIW 261 (465)
Q Consensus 245 LdkL~ktNV~Nd~F~I~ 261 (465)
..|+==|+..+.=+++
T Consensus 97 -~~~~ipN~~~~~vp~g 112 (421)
T 1ses_A 97 -LLLQVPLPPWPGAPVG 112 (421)
T ss_dssp -HHTTCCCCCCTTSCSS
T ss_pred -HHHhCCCCCCCCCCCC
Confidence 1234457776666666
No 139
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=43.55 E-value=1.3e+02 Score=24.26 Aligned_cols=20 Identities=15% Similarity=0.125 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 012379 229 EERDAISSKIEVSQAHLELL 248 (465)
Q Consensus 229 ~e~~sl~~q~~~~~~~LdkL 248 (465)
.+...+..++.+....+..|
T Consensus 79 ~~i~~le~~~~~~~~~l~~l 98 (107)
T 1fxk_A 79 LREKTIERQEERVMKKLQEM 98 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444
No 140
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=43.55 E-value=44 Score=27.45 Aligned_cols=36 Identities=14% Similarity=0.326 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 163 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKE 198 (465)
Q Consensus 163 ~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~ 198 (465)
++..+...|+.|-..|..+|++|++|...+..-+..
T Consensus 40 e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 40 ETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666777777776666666554443
No 141
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=43.33 E-value=97 Score=30.01 Aligned_cols=51 Identities=18% Similarity=0.226 Sum_probs=27.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeeecCCeeeeccccCCC
Q 012379 217 FNNFQFQLIAHQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDGEFGTINNFRLGR 276 (465)
Q Consensus 217 ~n~~q~ql~~~~~e~~sl~~q~~~~~~~LdkL~ktNV~Nd~F~I~hdG~fGTINGlRLGr 276 (465)
+...+.++...+.++..++++++.++.+|+ ++.|... .||.+..+| ...|.
T Consensus 124 ~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~---~~~i~AP-----~~G~V~~~~-~~~G~ 174 (369)
T 4dk0_A 124 LNNAKAEMDVVQENIKQAEIEVNTAETNLG---YTKITSP-----IDGTVISTP-VSEGQ 174 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---CSSCCCS-----CCSCCCBCC-CCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cCEEECC-----CCeEEEEee-CCCCC
Confidence 344445555556666677777777776654 4444332 356554443 24443
No 142
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=42.98 E-value=1.3e+02 Score=24.28 Aligned_cols=65 Identities=15% Similarity=0.277 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 124 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNA 194 (465)
Q Consensus 124 d~Lle~L~~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~ 194 (465)
|.|--.|+..+.+...|.++..+--+.|+... ..+..-+.+|+.|+.++...++-+....+++..
T Consensus 10 DKLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~------~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~ 74 (78)
T 3iv1_A 10 DKLRWRMKEEMDRAQAELNALKRTEEDLKKGH------QKLEEMVTRLDQEVAEVDKNIELLKKKDEELSS 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666666555554444443211 223344556677777777777776666665543
No 143
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=42.79 E-value=1.9e+02 Score=26.98 Aligned_cols=36 Identities=11% Similarity=0.236 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 169 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSK 204 (465)
Q Consensus 169 ~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~ 204 (465)
.+|-.|-..|.++|+..+.|.+.+..++..++.+..
T Consensus 23 ~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~ 58 (190)
T 4emc_A 23 ANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVK 58 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 445556666666666666666666666666655554
No 144
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=42.74 E-value=3e+02 Score=28.32 Aligned_cols=21 Identities=19% Similarity=0.037 Sum_probs=7.7
Q ss_pred eccccCCCCCCCCCChHHHHHH
Q 012379 269 INNFRLGRLPKIPVEWDEINAA 290 (465)
Q Consensus 269 INGlRLGrlp~~~V~W~EINAA 290 (465)
|+..+-|--| .+++..|-+..
T Consensus 287 i~~~gtG~~~-~~p~Fe~y~~~ 307 (486)
T 3haj_A 287 RANHGPGMAM-NWPQFEEWSAD 307 (486)
T ss_dssp HHHHSTTSCC-CCCCC------
T ss_pred HHHhCCCCCC-CCCCceeCCch
Confidence 4555556444 35555555443
No 145
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=42.12 E-value=38 Score=23.44 Aligned_cols=25 Identities=20% Similarity=0.407 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 176 RKLEAAIEETEKQNAEVNAELKELE 200 (465)
Q Consensus 176 ~~L~~eL~~LE~e~~~l~~el~~le 200 (465)
....++|++|+++...|+.|++.||
T Consensus 10 ~a~qqDIddlkrQN~~Le~Qir~le 34 (34)
T 1a93_B 10 DTHQQDIDDLKRQNALLEQQVRALX 34 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HhhHhhHHHHHHHHHHHHHHHHhcC
Confidence 3445677777777777777776553
No 146
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=41.03 E-value=1.3e+02 Score=23.84 Aligned_cols=30 Identities=20% Similarity=0.390 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 178 LEAAIEETEKQNAEVNAELKELELKSKRFK 207 (465)
Q Consensus 178 L~~eL~~LE~e~~~l~~el~~le~e~~~L~ 207 (465)
+.+.|+++|.+...++..+..++..+..=.
T Consensus 5 ~~~kLq~~E~~N~~Le~~v~~le~~Le~s~ 34 (72)
T 3cve_A 5 SHMKLQEVEIRNKDLEGQLSEMEQRLEKSQ 34 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777776554433
No 147
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=40.84 E-value=2.2e+02 Score=26.23 Aligned_cols=24 Identities=13% Similarity=0.183 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 128 DKLDKEVDDVTRDIEAYEACLQRL 151 (465)
Q Consensus 128 e~L~~qle~~~~E~d~Y~~fL~~L 151 (465)
..++..+..+++-++.|....+.+
T Consensus 129 ~~~~~~~~~l~Kak~~Y~~~c~e~ 152 (276)
T 2v0o_A 129 QTIQSITQALQKSKENYNAKCVEQ 152 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555565544444
No 148
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=40.64 E-value=34 Score=27.41 Aligned_cols=31 Identities=19% Similarity=0.416 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 168 KLKIEEEERKLEAAIEETEKQNAEVNAELKE 198 (465)
Q Consensus 168 ~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~ 198 (465)
+..|+.++.++..+++.|..+...+.++|..
T Consensus 49 I~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~ 79 (80)
T 1nlw_A 49 IKKLEDSDRKAVHQIDQLQREQRHLKRQLEK 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456777777777777777777776665543
No 149
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=40.30 E-value=1.1e+02 Score=24.44 Aligned_cols=7 Identities=0% Similarity=0.230 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 012379 134 VDDVTRD 140 (465)
Q Consensus 134 le~~~~E 140 (465)
++.+..+
T Consensus 24 le~le~~ 30 (89)
T 2lw1_A 24 LEQLPQL 30 (89)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 150
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=39.99 E-value=3.3e+02 Score=28.01 Aligned_cols=11 Identities=0% Similarity=0.090 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 012379 121 ECMRVLSDKLD 131 (465)
Q Consensus 121 eC~d~Lle~L~ 131 (465)
.|.+.++..++
T Consensus 81 ~aw~~~~~e~e 91 (486)
T 3haj_A 81 KAWMAFMSEAE 91 (486)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444433
No 151
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=39.67 E-value=1.2e+02 Score=24.30 Aligned_cols=38 Identities=13% Similarity=0.019 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 164 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELEL 201 (465)
Q Consensus 164 l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~ 201 (465)
+...+.+||..-.-++.-|++|-....+..++|..|+.
T Consensus 12 le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ 49 (78)
T 3efg_A 12 LEARLVELETRLSFQEQALTELSEALADARLTGARNAE 49 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333
No 152
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=39.62 E-value=3.9e+02 Score=28.72 Aligned_cols=18 Identities=22% Similarity=0.287 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 012379 227 HQEERDAISSKIEVSQAH 244 (465)
Q Consensus 227 ~~~e~~sl~~q~~~~~~~ 244 (465)
|+++...+.++++..+.+
T Consensus 565 ~~~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 565 FQKESRIMKNEIQDLQTK 582 (592)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 455555666666555544
No 153
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=39.20 E-value=93 Score=32.93 Aligned_cols=27 Identities=15% Similarity=0.273 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCceee
Q 012379 347 DKAMTLFLSCLKDFAEFANSKDQENNIPPDKCFKLPYKI 385 (465)
Q Consensus 347 D~AM~afL~cl~q~~~~~~~~d~~~~~~~~~~~~LPY~I 385 (465)
+.+...|-.++.-..+++.. +.|||++
T Consensus 345 e~s~~~~e~~l~~~~~il~~------------LgLpyrv 371 (501)
T 1wle_A 345 EQSSELLEEFLSLQMEILTE------------LGLHFRV 371 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHH------------TTCCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHH------------CCCcEEE
Confidence 37777777777666666642 6778886
No 154
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=38.73 E-value=42 Score=27.26 Aligned_cols=33 Identities=24% Similarity=0.377 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 168 KLKIEEEERKLEAAIEETEKQNAEVNAELKELE 200 (465)
Q Consensus 168 ~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le 200 (465)
+..|+.++..+..+++.|..+...|.++|..|+
T Consensus 54 I~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 54 ILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455777777788888888887777777776653
No 155
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=38.60 E-value=75 Score=23.80 Aligned_cols=23 Identities=9% Similarity=0.214 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 012379 170 KIEEEERKLEAAIEETEKQNAEV 192 (465)
Q Consensus 170 ~Le~EE~~L~~eL~~LE~e~~~l 192 (465)
.|+.+-..|..++..|+.|...+
T Consensus 33 ~L~~~n~~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 33 DLSSLNGQLQSEVTLLRNEVAQL 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444443333
No 156
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=38.56 E-value=85 Score=23.78 Aligned_cols=22 Identities=23% Similarity=0.438 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 012379 170 KIEEEERKLEAAIEETEKQNAE 191 (465)
Q Consensus 170 ~Le~EE~~L~~eL~~LE~e~~~ 191 (465)
.|+.+-..|..++..|..+...
T Consensus 34 ~L~~~n~~L~~ei~~L~~e~~~ 55 (63)
T 2wt7_A 34 QLEDEKSALQTEIANLLKEKEK 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444433333
No 157
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=38.45 E-value=3.7e+02 Score=28.21 Aligned_cols=27 Identities=11% Similarity=0.147 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 012379 127 SDKLDKEVDDVTRDIEAYEACLQRLEG 153 (465)
Q Consensus 127 le~L~~qle~~~~E~d~Y~~fL~~L~~ 153 (465)
.+-|-++-+.++++.+.-+..|.+|+.
T Consensus 88 ~D~L~k~q~~V~~~LqeLe~~l~~lsn 114 (464)
T 1m1j_B 88 QTTLLKQEKTVKPVLRDLKDRVAKFSD 114 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhHhHHHHHHHHHHHHhh
Confidence 444445555566666666666766653
No 158
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=38.01 E-value=34 Score=27.09 Aligned_cols=30 Identities=13% Similarity=0.318 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 169 LKIEEEERKLEAAIEETEKQNAEVNAELKE 198 (465)
Q Consensus 169 ~~Le~EE~~L~~eL~~LE~e~~~l~~el~~ 198 (465)
..|+.+...|..++++|..+...+.+++..
T Consensus 50 ~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 50 QYMRRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666665555543
No 159
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=37.33 E-value=2.2e+02 Score=25.22 Aligned_cols=23 Identities=9% Similarity=0.245 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 012379 130 LDKEVDDVTRDIEAYEACLQRLE 152 (465)
Q Consensus 130 L~~qle~~~~E~d~Y~~fL~~L~ 152 (465)
...+++.+++..+.-.+-.+.|+
T Consensus 22 a~~kLeeaek~adE~eR~~k~lE 44 (147)
T 2b9c_A 22 ALQKLEEAEKAADESERGMKVIE 44 (147)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566555555555555554
No 160
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=37.32 E-value=2e+02 Score=24.80 Aligned_cols=6 Identities=17% Similarity=0.429 Sum_probs=2.3
Q ss_pred HHHHHH
Q 012379 139 RDIEAY 144 (465)
Q Consensus 139 ~E~d~Y 144 (465)
+|+..|
T Consensus 63 ~eIk~~ 68 (142)
T 3gp4_A 63 EALIDY 68 (142)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 161
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=37.30 E-value=99 Score=28.73 Aligned_cols=20 Identities=15% Similarity=0.235 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 012379 227 HQEERDAISSKIEVSQAHLE 246 (465)
Q Consensus 227 ~~~e~~sl~~q~~~~~~~Ld 246 (465)
.+.++.+.+++++.++.+|+
T Consensus 110 a~a~l~~a~a~l~~a~~~l~ 129 (277)
T 2f1m_A 110 ANAAVTAAKAAVETARINLA 129 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 33344445555555554443
No 162
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=37.29 E-value=1.6e+02 Score=23.47 Aligned_cols=35 Identities=31% Similarity=0.280 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 177 KLEAAIEETEKQNAEVNAELKELELKSKRFKELEE 211 (465)
Q Consensus 177 ~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~ 211 (465)
.|...+..+.+|++++.+.++.++.+...+.++|.
T Consensus 3 ~L~k~i~~l~~E~eel~~klk~~~ee~~~~~eee~ 37 (71)
T 1s1c_X 3 MLTKDIEILRRENEELTEKMKKAEEEYKLEKEEEI 37 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777888888888888777777664444
No 163
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=37.03 E-value=2e+02 Score=24.74 Aligned_cols=16 Identities=25% Similarity=0.353 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 012379 170 KIEEEERKLEAAIEET 185 (465)
Q Consensus 170 ~Le~EE~~L~~eL~~L 185 (465)
.|..|-..|..+|+.+
T Consensus 19 ~Lkreie~lk~ele~l 34 (120)
T 3i00_A 19 RLYREISGLKAQLENM 34 (120)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555555544
No 164
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=36.83 E-value=67 Score=23.92 Aligned_cols=22 Identities=9% Similarity=0.081 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 012379 166 KEKLKIEEEERKLEAAIEETEK 187 (465)
Q Consensus 166 ~e~~~Le~EE~~L~~eL~~LE~ 187 (465)
.|...|+.+-..|.++++++..
T Consensus 26 ~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 26 LELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444333
No 165
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=36.54 E-value=3.7e+02 Score=27.65 Aligned_cols=17 Identities=18% Similarity=0.090 Sum_probs=10.6
Q ss_pred HHHHHHHHHHhhcCCCC
Q 012379 293 QACLLLHTMCQYFRPKF 309 (465)
Q Consensus 293 Q~~LLL~tla~~l~~~f 309 (465)
|-=.|+.+++..|-...
T Consensus 184 qqKQL~qv~a~~llP~~ 200 (390)
T 1deq_A 184 QQKQLEQVIAINLLPSR 200 (390)
T ss_pred HHHHHHhhhhhcccccc
Confidence 33448888887664443
No 166
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=35.93 E-value=2.3e+02 Score=24.98 Aligned_cols=20 Identities=10% Similarity=0.215 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 012379 127 SDKLDKEVDDVTRDIEAYEA 146 (465)
Q Consensus 127 le~L~~qle~~~~E~d~Y~~ 146 (465)
.+.|+++-++...|+..|..
T Consensus 28 ~e~l~kE~e~k~eeKkkiLa 47 (133)
T 1j1d_C 28 KQELEREAEERRGEKGRALS 47 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777766654
No 167
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=35.75 E-value=1.1e+02 Score=25.08 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 012379 178 LEAAIEETEKQNAEVNAELKEL 199 (465)
Q Consensus 178 L~~eL~~LE~e~~~l~~el~~l 199 (465)
-.++|+.+|++.......|..|
T Consensus 56 h~~ei~~le~~i~rhk~~i~~l 77 (84)
T 1gmj_A 56 HAKEIERLQKEIERHKQSIKKL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444443433333
No 168
>3bua_E HSNM1B, DNA cross-LINK repair 1B protein; TRF2 TRFH domain dimerization domain apollo peptide, alternative splicing, cell cycle; HET: DNA; 2.50A {Homo sapiens}
Probab=35.70 E-value=17 Score=25.16 Aligned_cols=18 Identities=28% Similarity=0.309 Sum_probs=14.6
Q ss_pred hHHHHHHHhhHHHHHHHH
Q 012379 406 TKALKYTLCNLKWALFWF 423 (465)
Q Consensus 406 TkAlK~lLtNlKwlLaw~ 423 (465)
..|+|||||-+.++-+-.
T Consensus 5 ~LALKYLLTPv~~l~a~~ 22 (36)
T 3bua_E 5 GLALKYLLTPVNFFQAGY 22 (36)
T ss_pred HHHHHHHhhhHHHHhccc
Confidence 469999999999886543
No 169
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=35.42 E-value=80 Score=21.09 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 012379 178 LEAAIEETEKQNAEVNAELKELE 200 (465)
Q Consensus 178 L~~eL~~LE~e~~~l~~el~~le 200 (465)
|.+|+..|.+|.+.+.=||..|+
T Consensus 7 lkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 7 LKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 170
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=35.38 E-value=43 Score=32.63 Aligned_cols=8 Identities=38% Similarity=0.555 Sum_probs=3.5
Q ss_pred ccCCCCCC
Q 012379 272 FRLGRLPK 279 (465)
Q Consensus 272 lRLGrlp~ 279 (465)
+|..-.|.
T Consensus 122 ~~V~Vsp~ 129 (251)
T 3m9b_A 122 MRLTCSPN 129 (251)
T ss_dssp CEECBCTT
T ss_pred EEEEeCCC
Confidence 44444443
No 171
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=35.37 E-value=2.8e+02 Score=25.93 Aligned_cols=54 Identities=11% Similarity=0.182 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHH
Q 012379 175 ERKLEAAIEETEKQNAEVNAELKELELKSKRFK-ELEERYWQEFNNFQFQLIAHQ 228 (465)
Q Consensus 175 E~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~-~~E~~~w~e~n~~q~ql~~~~ 228 (465)
-..|.++.+.++.+..++.++++++-....+++ ++=.+|-.-+|+-+..+.+++
T Consensus 141 ~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~L~~KF~~lLNeKK~KIR~lq 195 (213)
T 1ik9_A 141 NEHLQKENERLLRDWNDVQGRFEKAVSAKEALETDLYKRFILVLNEKKTKIRSLH 195 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 333444444444444455555555433333332 333356666676666665554
No 172
>3ter_A Mammalian stromal interaction molecule-1; dimer, metal binding protein; 2.55A {Caenorhabditis elegans}
Probab=34.85 E-value=2.1e+02 Score=25.33 Aligned_cols=43 Identities=5% Similarity=0.128 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cCCCceeeeec
Q 012379 221 QFQLIAHQEERDAISSKIEVSQAHLELLKRTN-VLNDAFPIWHD 263 (465)
Q Consensus 221 q~ql~~~~~e~~sl~~q~~~~~~~LdkL~ktN-V~Nd~F~I~hd 263 (465)
+.+...+...+.....++..|....+||+|-+ -+=-+|++-|.
T Consensus 44 E~E~q~~~~kk~~Aekql~~Ake~~eKlkKKrsSv~gs~~~aHs 87 (136)
T 3ter_A 44 ENEMAFLEKQRQDCFKEMKEAIEMVDRLQKKQGSVLSSLKLATG 87 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCCCCCS
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHhhhchheeeeeecC
Confidence 34444455566677788999999999999873 23234444444
No 173
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=34.78 E-value=4.2e+02 Score=27.78 Aligned_cols=20 Identities=20% Similarity=0.298 Sum_probs=0.0
Q ss_pred cCCCCCCCCCCCCCCCCCCC
Q 012379 26 PKQRPQSHGVPPRPRGSSAQ 45 (465)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~ 45 (465)
|..+.++.+.|.||.+++.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~ 41 (464)
T 1m1j_B 22 PLDKRQEAAPTLRPVAPPIS 41 (464)
T ss_dssp --------------------
T ss_pred ccccccccCCCCCCCCCCcC
Confidence 33444555555555554443
No 174
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=34.70 E-value=1.4e+02 Score=22.12 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 167 EKLKIEEEERKLEAAIEETEKQNAEVNAELKELEL 201 (465)
Q Consensus 167 e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~ 201 (465)
.+.+|++--..|...+.+||..+.++++|+..|.+
T Consensus 5 ~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~ 39 (48)
T 3vmx_A 5 QILRLKQINIQLATKIQHLEFSCSEKEQEIERLNK 39 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 34566666777888888888888888887777654
No 175
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=34.20 E-value=72 Score=22.29 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 183 EETEKQNAEVNAELKELELKSKRF 206 (465)
Q Consensus 183 ~~LE~e~~~l~~el~~le~e~~~L 206 (465)
+.|.++.++-+.||..|+.+-.+|
T Consensus 10 ekLhk~ie~KdeeIa~Lk~eN~eL 33 (37)
T 1t6f_A 10 EKLHKEIEQKDNEIARLKKENKEL 33 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHH
Confidence 344444444555555555444333
No 176
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=33.91 E-value=1.3e+02 Score=21.56 Aligned_cols=17 Identities=29% Similarity=0.458 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 012379 178 LEAAIEETEKQNAEVNA 194 (465)
Q Consensus 178 L~~eL~~LE~e~~~l~~ 194 (465)
|+.||..||+..+.+..
T Consensus 25 leselqalekklaalks 41 (48)
T 1g6u_A 25 LESELQALEKKLAALKS 41 (48)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 177
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=33.70 E-value=2.6e+02 Score=25.05 Aligned_cols=17 Identities=18% Similarity=0.177 Sum_probs=8.0
Q ss_pred HHHHHHHHhhcccCCCc
Q 012379 241 SQAHLELLKRTNVLNDA 257 (465)
Q Consensus 241 ~~~~LdkL~ktNV~Nd~ 257 (465)
....+.+|..-|-+.++
T Consensus 99 LeAE~aKLeEekQIseA 115 (146)
T 2xnx_M 99 LTIEKAKLEEEKQISDA 115 (146)
T ss_dssp HHHHHHHHGGGTTTC--
T ss_pred HHHHHHHHHHHHHHhHH
Confidence 44455566555554443
No 178
>3etv_A Protein transport protein TIP20,linker,protein transport protein DSL1; TIP20P-DSL1P complex, endoplasmic reticulum, ER-golgi transport; 1.94A {Saccharomyces cerevisiae} PDB: 3etu_A
Probab=33.57 E-value=1.3e+02 Score=30.72 Aligned_cols=56 Identities=11% Similarity=0.103 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccCCCHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 012379 130 LDKEVDDVTRDIEAYEACLQRLEGEARDVLSEA--DFLKEKLKIEEEERKLEAAIEET 185 (465)
Q Consensus 130 L~~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee--~l~~e~~~Le~EE~~L~~eL~~L 185 (465)
++.+++++++||+....-|+..+.......++. +....++.|.+++..|.+||..+
T Consensus 14 id~~I~~i~~eRd~La~~lq~~~~~~~~~~~~~~~~~~~d~e~llkre~~Lt~EL~~l 71 (355)
T 3etv_A 14 INDRIKQVQNERNELASKLQNLKQSLASNDTGGGSGGGSDSSDLLQREAILANELNIL 71 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC---------------------CTTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999988764221100111 22223344556666666666443
No 179
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=32.81 E-value=76 Score=24.96 Aligned_cols=28 Identities=36% Similarity=0.451 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 179 EAAIEETEKQNAEVNAELKELELKSKRF 206 (465)
Q Consensus 179 ~~eL~~LE~e~~~l~~el~~le~e~~~L 206 (465)
...+.+||.+..+-+++|..|+.++.++
T Consensus 24 de~I~eLE~~L~~kd~eI~eLr~~LdK~ 51 (67)
T 1zxa_A 24 EERIKELEKRLSEKEEEIQELKRKLHKC 51 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666667777777777777665544
No 180
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=32.47 E-value=41 Score=34.61 Aligned_cols=92 Identities=14% Similarity=0.274 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 163 DFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKIEVSQ 242 (465)
Q Consensus 163 ~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~ 242 (465)
++..++..|.++.+++..++++|+.++.++.++|..+....++. ++...+...+..++.+++++...++.++...
T Consensus 27 ~~~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 101 (425)
T 2dq3_A 27 SLVDKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDT----TEIQNRVKELKEEIDRLEEELRKVEEELKNT- 101 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCT----TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 34567777888888899999999999998888887653221100 1122333334444444444444444443322
Q ss_pred HHHHHHhhcccCCCceeeeec
Q 012379 243 AHLELLKRTNVLNDAFPIWHD 263 (465)
Q Consensus 243 ~~LdkL~ktNV~Nd~F~I~hd 263 (465)
.|+=-|+.++.=+++.|
T Consensus 102 ----~~~ipN~~~~~vp~g~~ 118 (425)
T 2dq3_A 102 ----LLWIPNLPHPSVPVGED 118 (425)
T ss_dssp ----HHTSCCCCCTTSCCCSS
T ss_pred ----HHhCCCCCCCCCCCCCC
Confidence 23445777766666543
No 181
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=32.38 E-value=2.3e+02 Score=24.08 Aligned_cols=12 Identities=25% Similarity=0.357 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 012379 181 AIEETEKQNAEV 192 (465)
Q Consensus 181 eL~~LE~e~~~l 192 (465)
|++.|..+..++
T Consensus 19 e~~~l~~~~~el 30 (125)
T 1joc_A 19 EIEKLQTKVLEL 30 (125)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 333333333333
No 182
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=31.73 E-value=2.2e+02 Score=23.52 Aligned_cols=22 Identities=9% Similarity=0.238 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 012379 182 IEETEKQNAEVNAELKELELKS 203 (465)
Q Consensus 182 L~~LE~e~~~l~~el~~le~e~ 203 (465)
...||.+...+..++..|..|.
T Consensus 50 ~~~LE~e~~~L~~e~~~L~~e~ 71 (90)
T 2wt7_B 50 KHHLENEKTQLIQQVEQLKQEV 71 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443333
No 183
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=31.59 E-value=3.1e+02 Score=25.61 Aligned_cols=24 Identities=21% Similarity=0.157 Sum_probs=12.6
Q ss_pred HHHHHhhcccCCC----ceeeeecCCee
Q 012379 244 HLELLKRTNVLND----AFPIWHDGEFG 267 (465)
Q Consensus 244 ~LdkL~ktNV~Nd----~F~I~hdG~fG 267 (465)
+|-=|+=.|++++ .|.+..-|.=|
T Consensus 80 ~LTGl~V~~~~ed~~~~~FDc~Qtg~nG 107 (190)
T 4emc_A 80 YLCNVRVHKSYEDDSGLWFDISQGTHSG 107 (190)
T ss_dssp HHHSEECCCCCCCSSCEEEEEEESCCC-
T ss_pred HccCcEEEEEEEcCCCeEEEEEecCCCC
Confidence 4555666677765 44444445444
No 184
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=31.56 E-value=1.9e+02 Score=30.45 Aligned_cols=26 Identities=23% Similarity=0.442 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCceeee
Q 012379 349 AMTLFLSCLKDFAEFANSKDQENNIPPDKCFKLPYKIE 386 (465)
Q Consensus 349 AM~afL~cl~q~~~~~~~~d~~~~~~~~~~~~LPY~I~ 386 (465)
+...|-.++.-..++... +.|||++-
T Consensus 335 s~~e~e~~~~~~e~il~~------------LGLpyrvv 360 (484)
T 3lss_A 335 SWRHLEDMITTSEEFNKS------------LGLPYRVV 360 (484)
T ss_dssp HHHHHHHHHHHHHHHHHH------------HTCCEEEE
T ss_pred HHHHHHHHHHHHHHHHHH------------cCCcEEEE
Confidence 666666655555555432 67788773
No 185
>3tkl_B LIDA protein, substrate of the DOT/ICM system; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Legionella pneumophila}
Probab=31.39 E-value=95 Score=29.82 Aligned_cols=45 Identities=22% Similarity=0.312 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc--ccCCCHHHHHHHHHHH
Q 012379 127 SDKLDKEVDDVTRDIEAYEACLQRLEGEA--RDVLSEADFLKEKLKI 171 (465)
Q Consensus 127 le~L~~qle~~~~E~d~Y~~fL~~L~~~~--~~~~~ee~l~~e~~~L 171 (465)
++.|++|-..++...+.|..-|....+.. .+.++.+++.+++.++
T Consensus 44 l~kLE~qq~~lt~KY~~Ye~sL~eF~~~sd~yeal~~e~ine~i~~~ 90 (267)
T 3tkl_B 44 LDKLERQGKDLEDKYKTYEENLEGFEKLLTDSEELSLSEINEKMKAF 90 (267)
T ss_dssp -------------------------------CCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhcCHHHHHHHHHHH
Confidence 45566666666666677777776655432 3345556655544433
No 186
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=30.90 E-value=68 Score=33.13 Aligned_cols=7 Identities=14% Similarity=0.582 Sum_probs=5.2
Q ss_pred CCChHHH
Q 012379 281 PVEWDEI 287 (465)
Q Consensus 281 ~V~W~EI 287 (465)
.|.|+.|
T Consensus 168 ~v~~~di 174 (428)
T 4b4t_K 168 DVTYADV 174 (428)
T ss_dssp SCCGGGS
T ss_pred CCCHHHh
Confidence 4889876
No 187
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=30.85 E-value=1.7e+02 Score=28.53 Aligned_cols=48 Identities=21% Similarity=0.236 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh
Q 012379 169 LKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQ-EFN 218 (465)
Q Consensus 169 ~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~-e~n 218 (465)
.++++.-.++..++.++++++.++++++.+++....-++.+ ..|. .++
T Consensus 95 ~~~e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~~~~l~~L--~p~~~~ld 143 (357)
T 3rrk_A 95 EEAEAVLRPVASRAEVLGKERAALEEEIQTIELFGKAAEKL--AALAHGLD 143 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--hhhhccCC
Confidence 34455566666777777777777777777777663333333 2465 443
No 188
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=30.74 E-value=2.5e+02 Score=23.84 Aligned_cols=29 Identities=24% Similarity=0.186 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 171 IEEEERKLEAAIEETEKQNAEVNAELKEL 199 (465)
Q Consensus 171 Le~EE~~L~~eL~~LE~e~~~l~~el~~l 199 (465)
+-=+-+-|.-.|+++|...+++.++.++.
T Consensus 28 l~YqVdlLKD~LEe~eE~~aql~Re~~eK 56 (103)
T 4h22_A 28 FMYQVDTLKDMLLELEEQLAESRRQYEEK 56 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444433
No 189
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=30.57 E-value=2.2e+02 Score=24.70 Aligned_cols=42 Identities=19% Similarity=0.241 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 165 LKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 206 (465)
Q Consensus 165 ~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L 206 (465)
.+...-++.-.+.+...++.+++..+.+.+++..++..+.++
T Consensus 97 ~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l 138 (151)
T 2zdi_C 97 DEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEV 138 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444566666666677777777777766666666555444
No 190
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=30.05 E-value=3e+02 Score=24.62 Aligned_cols=22 Identities=5% Similarity=0.077 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 012379 230 ERDAISSKIEVSQAHLELLKRT 251 (465)
Q Consensus 230 e~~sl~~q~~~~~~~LdkL~kt 251 (465)
++.....+......+++.+.+.
T Consensus 85 ek~~r~e~k~~l~~ql~qv~~L 106 (150)
T 4dci_A 85 KRSELEEQKRNLLQQQAQVREL 106 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 3344444444555555555543
No 191
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=29.86 E-value=2.7e+02 Score=23.91 Aligned_cols=21 Identities=10% Similarity=0.336 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 012379 128 DKLDKEVDDVTRDIEAYEACL 148 (465)
Q Consensus 128 e~L~~qle~~~~E~d~Y~~fL 148 (465)
.+|+.+++.+.++++.-..|+
T Consensus 16 ~ql~~qL~k~~~~r~~Le~~w 36 (112)
T 1x79_B 16 RQANDQLEKTMKDKQELEDFI 36 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443
No 192
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=29.73 E-value=3.3e+02 Score=25.69 Aligned_cols=63 Identities=14% Similarity=0.205 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 142 EAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 207 (465)
Q Consensus 142 d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~ 207 (465)
+..+..|.+|..-. +...+--+.+++|+.+-.....+-.+|++..+.+.+|+.+|+...+.|+
T Consensus 9 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLe 71 (206)
T 3oa7_A 9 EEHEDILNKLLDPE---LAQSERTEALQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLE 71 (206)
T ss_dssp HHHHHHHHHHHCTT---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhcCHh---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcc
Confidence 34455666664311 2222223455677888888888888888888888888888887777663
No 193
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=29.59 E-value=3.1e+02 Score=24.53 Aligned_cols=39 Identities=21% Similarity=0.311 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 162 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 200 (465)
Q Consensus 162 e~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le 200 (465)
+.+.+....|....+.|..++..|+++...+..+|+..-
T Consensus 10 e~lr~~~~~L~~~~r~Ldr~~~kle~~ekk~~~~Ikka~ 48 (179)
T 2gd5_A 10 ELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAA 48 (179)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666777777777777777777777777776653
No 194
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=29.51 E-value=4.8e+02 Score=26.82 Aligned_cols=29 Identities=14% Similarity=0.053 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012379 222 FQLIAHQEERDAISSKIEVSQAHLELLKR 250 (465)
Q Consensus 222 ~ql~~~~~e~~sl~~q~~~~~~~LdkL~k 250 (465)
.++..++....++..+++..+.++..|..
T Consensus 105 ~~i~~l~~~~~~~~~~i~~l~~~i~~l~~ 133 (409)
T 1m1j_C 105 NTIQQLTDMHIMNSNKITQLKQKIAQLES 133 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34444455555566666666666666654
No 195
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=28.83 E-value=1.7e+02 Score=21.28 Aligned_cols=6 Identities=33% Similarity=0.700 Sum_probs=2.2
Q ss_pred HHHHHH
Q 012379 172 EEEERK 177 (465)
Q Consensus 172 e~EE~~ 177 (465)
|..|..
T Consensus 23 erdeqn 28 (52)
T 3he5_B 23 ERDEQN 28 (52)
T ss_dssp HHHHHH
T ss_pred hhhHhh
Confidence 333333
No 196
>3tq7_B Microtubule-associated protein RP/EB family membe; CAP-Gly domain, protein-protein interaction, microtubule BIN cytoskeleton, protein binding; 2.30A {Homo sapiens} SCOP: a.245.1.1
Probab=28.43 E-value=66 Score=26.23 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012379 126 LSDKLDKEVDDVTRDIEAYEACLQRLE 152 (465)
Q Consensus 126 Lle~L~~qle~~~~E~d~Y~~fL~~L~ 152 (465)
-+..|+..++.+++|||-|-.-|+.++
T Consensus 9 ei~eLk~~ve~lEkERDFYF~KLRdIE 35 (82)
T 3tq7_B 9 QLVDLKLTVDGLEKERDFYFSKLRDIE 35 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356789999999999999999998876
No 197
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=28.07 E-value=1.7e+02 Score=21.00 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 012379 181 AIEETEKQNAEVNAELKELELK 202 (465)
Q Consensus 181 eL~~LE~e~~~l~~el~~le~e 202 (465)
||..||.|...++..+..++.+
T Consensus 21 elaaleselqalekklaalksk 42 (48)
T 1g6u_A 21 ELAALESELQALEKKLAALKSK 42 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444333
No 198
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=27.98 E-value=79 Score=24.20 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 176 RKLEAAIEETEKQNAEVNAELKELEL 201 (465)
Q Consensus 176 ~~L~~eL~~LE~e~~~l~~el~~le~ 201 (465)
..|..+++.|+.+...|..++..|..
T Consensus 33 ~~Le~~v~~L~~eN~~L~~ev~~Lr~ 58 (63)
T 2dgc_A 33 KQLEDKVEELLSKNYHLENEVARLKK 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555554443
No 199
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=27.69 E-value=1.4e+02 Score=21.59 Aligned_cols=25 Identities=12% Similarity=0.308 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 162 ADFLKEKLKIEEEERKLEAAIEETE 186 (465)
Q Consensus 162 e~l~~e~~~Le~EE~~L~~eL~~LE 186 (465)
+++...+.++-.|..+-+++|.++.
T Consensus 5 ~~l~qkI~kVdrEI~Kte~kI~~lq 29 (42)
T 2l5g_B 5 EELIQNMDRVDREITMVEQQISKLK 29 (42)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444333333333333333
No 200
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=27.15 E-value=4.9e+02 Score=26.09 Aligned_cols=132 Identities=11% Similarity=0.059 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 118 LCLECMRVLSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVL--SEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAE 195 (465)
Q Consensus 118 LC~eC~d~Lle~L~~qle~~~~E~d~Y~~fL~~L~~~~~~~~--~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~e 195 (465)
++......+++.|..-+.+.++.++.|.....++.++..... .-+...+...+...+.+......+...+. .++++-
T Consensus 91 lae~L~~~v~~~l~~~~ke~~~~rK~~~~~~~klqk~~~k~~~~~lekaKk~Y~~~cke~e~A~~k~~~~~k~-ke~eK~ 169 (406)
T 4dyl_A 91 HAEDLNSGPLSKLSLLIRERQQLRKTYSEQWQQLQQELTKTHSQDIEKLKSQYRALARDSAQAKRKYQEASKD-KDRDKA 169 (406)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCC----------CHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC-chHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHH-HHHHHHhh
Q 012379 196 LKELELKSKRFKELEERYWQEFNNFQFQLIA-HQEERDAISSKIEVSQ-AHLELLKR 250 (465)
Q Consensus 196 l~~le~e~~~L~~~E~~~w~e~n~~q~ql~~-~~~e~~sl~~q~~~~~-~~LdkL~k 250 (465)
...++.....+..-..+|-..++.+...... +......+...++... ..+..|+.
T Consensus 170 ~~k~~k~~~~~~~a~neY~~~l~~~N~~~~~yy~~~lp~~~d~lQ~lEe~Ri~~lk~ 226 (406)
T 4dyl_A 170 KDKYVRSLWKLFAHHNRYVLGVRAAQLHHQHHHQLLLPGLLRSLQDLHEEMACILKE 226 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
No 201
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=27.04 E-value=1.1e+02 Score=30.53 Aligned_cols=9 Identities=22% Similarity=0.272 Sum_probs=6.1
Q ss_pred ceeeeecCC
Q 012379 312 RIKIIPMGS 320 (465)
Q Consensus 312 ~ykLvPmGS 320 (465)
-|.|.|-|+
T Consensus 89 vY~I~p~~~ 97 (323)
T 1lwu_C 89 LYYIKPLKA 97 (323)
T ss_dssp EEEECCTTC
T ss_pred EEEEecCCC
Confidence 377888763
No 202
>3tnf_B LIDA, RAS-related protein RAB-8A; protein transport, vesicular trafficking, GTPase, vesicle recuitment, LCV, DRRA, SIDM; HET: GNP; 2.50A {Legionella pneumophila subsp}
Probab=26.69 E-value=1.6e+02 Score=29.50 Aligned_cols=48 Identities=21% Similarity=0.264 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--ccCCCHHHHHHHHHHH
Q 012379 124 RVLSDKLDKEVDDVTRDIEAYEACLQRLEGEA--RDVLSEADFLKEKLKI 171 (465)
Q Consensus 124 d~Lle~L~~qle~~~~E~d~Y~~fL~~L~~~~--~~~~~ee~l~~e~~~L 171 (465)
+.=++.|++|-..++...+.|..-|....+.. .+.++.+++.+++.++
T Consensus 24 ~~rl~kLE~qq~~lt~KY~~Ye~sL~eF~~~sd~yeal~~e~ine~ie~l 73 (384)
T 3tnf_B 24 EKKLDKLERQGKDLEDKYKTYEENLEGFEKLLTDSEELSLSEINEKMEAF 73 (384)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHTSHHHHTTCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhHHHHHHhcchhhhcCHHHHHHHHHHH
Confidence 34456677777777777777887776655432 3445666665554444
No 203
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=26.40 E-value=70 Score=27.31 Aligned_cols=26 Identities=19% Similarity=0.244 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012379 127 SDKLDKEVDDVTRDIEAYEACLQRLE 152 (465)
Q Consensus 127 le~L~~qle~~~~E~d~Y~~fL~~L~ 152 (465)
+..|+..++.+++|||-|-.-|+.++
T Consensus 27 i~eLk~~ve~lEkERDFYF~KLRdIE 52 (106)
T 4e61_A 27 IEQYKGTVSTLEIEREFYFNKLRDIE 52 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45577777888888888887777664
No 204
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=26.39 E-value=3.2e+02 Score=24.47 Aligned_cols=19 Identities=26% Similarity=0.267 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 012379 169 LKIEEEERKLEAAIEETEK 187 (465)
Q Consensus 169 ~~Le~EE~~L~~eL~~LE~ 187 (465)
..++.+..+|..+...++.
T Consensus 36 ~~le~e~~kl~~e~~i~ea 54 (146)
T 2xnx_M 36 LEKELEEKKKALELAIDQA 54 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444433333
No 205
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=26.35 E-value=4.1e+02 Score=24.96 Aligned_cols=40 Identities=20% Similarity=0.313 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 161 EADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELE 200 (465)
Q Consensus 161 ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le 200 (465)
.+.+.+....|..+.+.|..++..|+++...+..+|+..-
T Consensus 9 ~e~~r~~~r~Lr~~~R~LdR~~~kle~eEkk~~~~IKkaa 48 (218)
T 3frt_A 9 KELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAA 48 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666677888888888888888888888888877764
No 206
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=26.31 E-value=2.8e+02 Score=23.00 Aligned_cols=32 Identities=13% Similarity=0.107 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 012379 122 CMRVLSDKLDKEVDDVTRDIEAYEACLQRLEG 153 (465)
Q Consensus 122 C~d~Lle~L~~qle~~~~E~d~Y~~fL~~L~~ 153 (465)
|...-|+.|+++++...+.++.-..-.+-...
T Consensus 19 kL~~Ki~el~~ei~ke~~~regl~Km~~vY~~ 50 (98)
T 2ke4_A 19 RLQQQLEERSRELQKEVDQREALKKMKDVYEK 50 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34455677888888888888877766665544
No 207
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=26.03 E-value=63 Score=24.35 Aligned_cols=19 Identities=11% Similarity=0.216 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 012379 171 IEEEERKLEAAIEETEKQN 189 (465)
Q Consensus 171 Le~EE~~L~~eL~~LE~e~ 189 (465)
|+.+-..|..++..|+.+.
T Consensus 34 L~~~n~~L~~~v~~L~~e~ 52 (62)
T 1jnm_A 34 LKAQNSELASTANMLREQV 52 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333443333333
No 208
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=25.80 E-value=4e+02 Score=24.59 Aligned_cols=23 Identities=13% Similarity=0.209 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 012379 194 AELKELELKSKRFKELEERYWQE 216 (465)
Q Consensus 194 ~el~~le~e~~~L~~~E~~~w~e 216 (465)
.....++.....+..++.+|-..
T Consensus 90 ~~r~~l~~~l~~~~~L~~~~~~k 112 (192)
T 2p22_C 90 EQKDKVQALLENARILESKYVAS 112 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555566666655333
No 209
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=25.80 E-value=44 Score=26.59 Aligned_cols=46 Identities=20% Similarity=0.281 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 164 FLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKEL 209 (465)
Q Consensus 164 l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~ 209 (465)
+...+..+...-.-+..=|.+-|...+.+..+++-|+.|+.+++..
T Consensus 20 l~~~L~~~~k~~~Hl~~LL~EsEatnarL~eq~~lLK~EIRRlERn 65 (71)
T 3bbp_D 20 LVQKLSSTTKSADHLNGLLRETEATNAILMEQIKLLKSEIRRLERN 65 (71)
T ss_dssp ---------CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhh
Confidence 3333333333333444556666667777777777777777776543
No 210
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=25.66 E-value=1.2e+02 Score=25.57 Aligned_cols=22 Identities=9% Similarity=-0.080 Sum_probs=10.0
Q ss_pred HHhhcccCCCceeeeecCCeee
Q 012379 247 LLKRTNVLNDAFPIWHDGEFGT 268 (465)
Q Consensus 247 kL~ktNV~Nd~F~I~hdG~fGT 268 (465)
-|++...|.+-.-|--..|-||
T Consensus 55 Di~~i~~f~~qtviaIkAP~gT 76 (106)
T 2aze_B 55 DLRSIADPAEQMVMVIKAPPET 76 (106)
T ss_dssp HHHTTSCTTTEEEEEEECCTTC
T ss_pred HHhcCcCCCcCeEEEEECCCCC
Confidence 3444444544444444444444
No 211
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=25.57 E-value=2.1e+02 Score=21.25 Aligned_cols=38 Identities=16% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 162 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKEL 199 (465)
Q Consensus 162 e~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~l 199 (465)
.++..++..|.+.-.+|...|.+.-.+...+.+++.+|
T Consensus 12 ~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 12 HQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 212
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=25.39 E-value=41 Score=33.74 Aligned_cols=12 Identities=17% Similarity=0.662 Sum_probs=7.1
Q ss_pred ChHHHHHHHHHH
Q 012379 283 EWDEINAAWGQA 294 (465)
Q Consensus 283 ~W~EINAAwGQ~ 294 (465)
.|.|-=.++|.+
T Consensus 120 ~W~~Yk~GFG~~ 131 (319)
T 1fzc_C 120 NWIQYKEGFGHL 131 (319)
T ss_dssp CHHHHHHCEEEE
T ss_pred CHHHHhHhhCCc
Confidence 566666666554
No 213
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=25.12 E-value=86 Score=32.22 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCcee
Q 012379 347 DKAMTLFLSCLKDFAEFANSKDQENNIPPDKCFKLPYK 384 (465)
Q Consensus 347 D~AM~afL~cl~q~~~~~~~~d~~~~~~~~~~~~LPY~ 384 (465)
+.+...+..++.-..+++.. +.|||+
T Consensus 293 e~s~~~~~e~i~~~~~il~~------------LGL~~r 318 (425)
T 2dq3_A 293 DTSYDELEKLVKDAEEVLQL------------LGLPYR 318 (425)
T ss_dssp GGHHHHHHHHHHHHHHHHHH------------HTCCEE
T ss_pred HHHHHHHHHHHHHHHHHHHH------------CCCceE
Confidence 45666666666666666543 578888
No 214
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens}
Probab=25.00 E-value=5.3e+02 Score=25.81 Aligned_cols=17 Identities=18% Similarity=0.147 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHhh
Q 012379 234 ISSKIEVSQAHLELLKR 250 (465)
Q Consensus 234 l~~q~~~~~~~LdkL~k 250 (465)
++.|+.+.+..++.|+.
T Consensus 362 le~qi~~~~~~~~~le~ 378 (386)
T 4akv_A 362 LRQQILFYQRVGQQLEK 378 (386)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34677777777777664
No 215
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=24.97 E-value=4.1e+02 Score=24.51 Aligned_cols=20 Identities=10% Similarity=0.215 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 012379 127 SDKLDKEVDDVTRDIEAYEA 146 (465)
Q Consensus 127 le~L~~qle~~~~E~d~Y~~ 146 (465)
.+.|+++-++...|+..|..
T Consensus 28 ~e~L~~E~e~k~eEKkkiLa 47 (180)
T 1j1e_C 28 KQELEREAEERRGEKGRALS 47 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666553
No 216
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=24.78 E-value=1.7e+02 Score=23.06 Aligned_cols=37 Identities=30% Similarity=0.436 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 170 KIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFK 207 (465)
Q Consensus 170 ~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~ 207 (465)
+|..+-..|..+|..+|..-.-.. ++..|+.+...|+
T Consensus 21 ~L~~eH~~LD~~I~~le~~~~~~~-~l~~LKk~KL~LK 57 (76)
T 1zhc_A 21 KIFEKHNQLDDDIKTAEQQNASDA-EVSHMKKQKLKLK 57 (76)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSCHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHhH
Confidence 344555555555555554333222 4444444444443
No 217
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=24.36 E-value=3.5e+02 Score=23.45 Aligned_cols=8 Identities=25% Similarity=0.505 Sum_probs=3.5
Q ss_pred HHHHhhcc
Q 012379 245 LELLKRTN 252 (465)
Q Consensus 245 LdkL~ktN 252 (465)
+..+|--|
T Consensus 104 Iq~~~~~~ 111 (119)
T 2avr_X 104 IQALRAGN 111 (119)
T ss_dssp HHHHHHTT
T ss_pred HHHHHccc
Confidence 44444444
No 218
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=24.07 E-value=3.3e+02 Score=24.95 Aligned_cols=41 Identities=15% Similarity=0.136 Sum_probs=23.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012379 210 EERYWQEFNNFQFQLIAHQEERDAISSKIEVSQAHLELLKR 250 (465)
Q Consensus 210 E~~~w~e~n~~q~ql~~~~~e~~sl~~q~~~~~~~LdkL~k 250 (465)
++.+-+..+.++.....++.++..+...++....+.++++.
T Consensus 51 ~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~k~~e 91 (174)
T 2p22_A 51 HEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRAKVQQ 91 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555555566666666666666665555544
No 219
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=23.80 E-value=3e+02 Score=22.42 Aligned_cols=21 Identities=5% Similarity=0.162 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 012379 130 LDKEVDDVTRDIEAYEACLQR 150 (465)
Q Consensus 130 L~~qle~~~~E~d~Y~~fL~~ 150 (465)
|+.-++.-.+-++.-..-|.+
T Consensus 15 LQSALeaEIqAKQ~i~EELs~ 35 (81)
T 1wt6_A 15 LQEALEEEVLTRQSLSREMEA 35 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444333333333333333
No 220
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=23.75 E-value=3.3e+02 Score=23.03 Aligned_cols=27 Identities=15% Similarity=0.217 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 174 EERKLEAAIEETEKQNAEVNAELKELE 200 (465)
Q Consensus 174 EE~~L~~eL~~LE~e~~~l~~el~~le 200 (465)
|...|.=+++-|....++++..+..+.
T Consensus 24 EKsal~YqVdlLKD~LEe~eE~~aql~ 50 (103)
T 4h22_A 24 EKTNFMYQVDTLKDMLLELEEQLAESR 50 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 221
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=23.69 E-value=3.2e+02 Score=22.84 Aligned_cols=24 Identities=17% Similarity=0.484 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 128 DKLDKEVDDVTRDIEAYEACLQRL 151 (465)
Q Consensus 128 e~L~~qle~~~~E~d~Y~~fL~~L 151 (465)
+.+..++..++.+...+..-+++|
T Consensus 8 e~lre~l~~le~~~~~~~~e~~~L 31 (97)
T 2eqb_B 8 NQLKEDYNTLKRELSDRDDEVKRL 31 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHH
Confidence 345556666655555555444444
No 222
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=23.69 E-value=40 Score=21.81 Aligned_cols=18 Identities=22% Similarity=0.309 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 012379 186 EKQNAEVNAELKELELKS 203 (465)
Q Consensus 186 E~e~~~l~~el~~le~e~ 203 (465)
|=|...+++.|..|+.++
T Consensus 6 efendaleqkiaalkqki 23 (28)
T 3ra3_A 6 EFENDALEQKIAALKQKI 23 (28)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHH
Confidence 333344444444444333
No 223
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=23.49 E-value=3.5e+02 Score=23.23 Aligned_cols=30 Identities=17% Similarity=0.185 Sum_probs=15.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 159 LSEADFLKEKLKIEEEERKLEAAIEETEKQ 188 (465)
Q Consensus 159 ~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e 188 (465)
++-++|++|+...|.+.-...+.|++.++.
T Consensus 22 ~~ieeLq~Ei~~~E~QL~~ArQKLkdA~~~ 51 (113)
T 4fi5_A 22 MTMEELQREINAHEGQLVIARQKVRDAEKQ 51 (113)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666655555555555555544443
No 224
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=23.41 E-value=1.5e+02 Score=23.68 Aligned_cols=30 Identities=13% Similarity=0.318 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 164 FLKEKLKIEEEERKLEAAIEETEKQNAEVN 193 (465)
Q Consensus 164 l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~ 193 (465)
+......|+.|-..|..++..|++|...+.
T Consensus 41 ~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 41 TQHKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555566666666666655555443
No 225
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=23.29 E-value=1.5e+02 Score=23.32 Aligned_cols=50 Identities=10% Similarity=0.188 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 012379 181 AIEETEKQNAEVNAELKELELKSKRFKELEERYWQEFNNFQFQLIAHQEERDAISSKI 238 (465)
Q Consensus 181 eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~n~~q~ql~~~~~e~~sl~~q~ 238 (465)
.+..|..+..+|+.+|..++.....-. +...++.+...+.|+...+..++
T Consensus 18 ~f~~L~~eH~~LD~~I~~le~~~~~~~--------~l~~LKk~KL~LKDeI~~lL~~~ 67 (76)
T 1zhc_A 18 HFDKIFEKHNQLDDDIKTAEQQNASDA--------EVSHMKKQKLKLKDEIHSMIIEY 67 (76)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCSCHH--------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCChH--------HHHHHHHHHHHhHHHHHHHHHHH
Confidence 444555555555555555543221111 23344555555555555554443
No 226
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=22.08 E-value=3.8e+02 Score=23.12 Aligned_cols=10 Identities=20% Similarity=0.484 Sum_probs=6.5
Q ss_pred HHHHHhhccc
Q 012379 244 HLELLKRTNV 253 (465)
Q Consensus 244 ~LdkL~ktNV 253 (465)
.+.+|+--|+
T Consensus 103 ~ik~lr~gn~ 112 (119)
T 3etw_A 103 KIQALRAGNL 112 (119)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHcCCc
Confidence 5667776665
No 227
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=21.81 E-value=92 Score=24.56 Aligned_cols=26 Identities=8% Similarity=0.079 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 177 KLEAAIEETEKQNAEVNAELKELELK 202 (465)
Q Consensus 177 ~L~~eL~~LE~e~~~l~~el~~le~e 202 (465)
.|..++..++.+.+++.++...|+.+
T Consensus 51 ~L~~~~~~l~~e~~~L~~~~~~L~~~ 76 (83)
T 1nkp_B 51 YMRRKNHTHQQDIDDLKRQNALLEQQ 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443
No 228
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=21.60 E-value=2.8e+02 Score=21.39 Aligned_cols=37 Identities=19% Similarity=0.292 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 173 EEERKLEAAIEETEKQNAEVNAELKELELKSKRFKEL 209 (465)
Q Consensus 173 ~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~ 209 (465)
.-...-++.+.+|-+-...+.+||+.++.++..|..+
T Consensus 20 ~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQse 56 (63)
T 2w6a_A 20 KALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAE 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhh
Confidence 3333344566677777777777777777777666544
No 229
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=21.53 E-value=4.3e+02 Score=23.45 Aligned_cols=24 Identities=21% Similarity=0.513 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 176 RKLEAAIEETEKQNAEVNAELKEL 199 (465)
Q Consensus 176 ~~L~~eL~~LE~e~~~l~~el~~l 199 (465)
++|-+++..+-+...+|+++|..+
T Consensus 62 k~Lhaev~~v~~~F~~Ld~~L~~l 85 (140)
T 1xaw_A 62 KSLQSVLDEINKELSRLDKELDDY 85 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 334444444444444444444444
No 230
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=21.38 E-value=3.2e+02 Score=21.98 Aligned_cols=56 Identities=5% Similarity=0.125 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 162 ADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAELKELELKSKRFKELEERYWQEF 217 (465)
Q Consensus 162 e~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L~~~E~~~w~e~ 217 (465)
..+.......-.-.-+|...|+.+..|..+|.-+++.+.-++..+.+.-+.+..+.
T Consensus 9 ~~LEr~~~~~~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dL 64 (83)
T 2xdj_A 9 TQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQI 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
No 231
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=21.35 E-value=3.3e+02 Score=22.10 Aligned_cols=26 Identities=15% Similarity=0.314 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 181 AIEETEKQNAEVNAELKELELKSKRF 206 (465)
Q Consensus 181 eL~~LE~e~~~l~~el~~le~e~~~L 206 (465)
.|.+++...++...-|..++.|...+
T Consensus 35 ~i~~ie~~ldEA~ell~qMelE~~~~ 60 (97)
T 3onj_A 35 TLKHVEQQQDELFDLLDQMDVEVNNS 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34444444444444444555444444
No 232
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=21.29 E-value=1.6e+02 Score=22.51 Aligned_cols=28 Identities=18% Similarity=0.181 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 179 EAAIEETEKQNAEVNAELKELELKSKRF 206 (465)
Q Consensus 179 ~~eL~~LE~e~~~l~~el~~le~e~~~L 206 (465)
.+.+.+||.+.+.|..+-..|..+...|
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~L~~ev~~L 56 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYHLENEVARL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556665555555555555554444
No 233
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=21.28 E-value=2.5e+02 Score=28.18 Aligned_cols=38 Identities=21% Similarity=0.074 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCCCceeeeecC
Q 012379 227 HQEERDAISSKIEVSQAHLELLKRTNVLNDAFPIWHDG 264 (465)
Q Consensus 227 ~~~e~~sl~~q~~~~~~~LdkL~ktNV~Nd~F~I~hdG 264 (465)
++++.++.+.++..+..-++.=-..-++..++.|.+.+
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~g~~~~lAgal~~~~~~ 323 (426)
T 1lrz_A 286 LQQQLDANEQKIEEGKRLQEEHGNELPISAGFFFINPF 323 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSEEEEEEEEEEECSS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcceeEEEEEEEECC
Confidence 34444444444444432222211123677778877654
No 234
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=21.26 E-value=2.4e+02 Score=20.46 Aligned_cols=30 Identities=27% Similarity=0.386 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 171 IEEEERKLEAAIEETEKQNAEVNAELKELE 200 (465)
Q Consensus 171 Le~EE~~L~~eL~~LE~e~~~l~~el~~le 200 (465)
|++.--.|+..-..||+-.+.+..||..|+
T Consensus 15 lkkdnlqlerdeqnlekiianlrdeiarle 44 (52)
T 3he5_B 15 LKKDNLQLERDEQNLEKIIANLRDEIARLE 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhhhhhHhhHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 235
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=21.07 E-value=7e+02 Score=25.75 Aligned_cols=28 Identities=25% Similarity=0.445 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 012379 126 LSDKLDKEVDDVTRDIEAYEACLQRLEG 153 (465)
Q Consensus 126 Lle~L~~qle~~~~E~d~Y~~fL~~L~~ 153 (465)
|-+-|-++-..+.++.+.-+.-|+.++.
T Consensus 25 l~d~L~kye~~V~~~l~~L~~~l~~isn 52 (411)
T 3ghg_C 25 IADFLSTYQTKVDKDLQSLEDILHQVEN 52 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchhhHHHHHHHHHHHHHh
Confidence 4455555556666666666666666654
No 236
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=20.97 E-value=2.2e+02 Score=23.45 Aligned_cols=24 Identities=13% Similarity=0.230 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 178 LEAAIEETEKQNAEVNAELKELEL 201 (465)
Q Consensus 178 L~~eL~~LE~e~~~l~~el~~le~ 201 (465)
...++..+......+++++..++.
T Consensus 35 ~~~e~~~~q~~i~~lE~eL~~~r~ 58 (95)
T 3mov_A 35 LAKEKDNSRRMLTDKEREMAEIRD 58 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444443
No 237
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=20.94 E-value=2.8e+02 Score=30.53 Aligned_cols=13 Identities=23% Similarity=0.353 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 012379 192 VNAELKELELKSK 204 (465)
Q Consensus 192 l~~el~~le~e~~ 204 (465)
+++|+..++.+..
T Consensus 435 ~~~~~~~~~~~~~ 447 (854)
T 1qvr_A 435 IEAEIAKLTEEIA 447 (854)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 238
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=20.79 E-value=5.6e+02 Score=24.53 Aligned_cols=79 Identities=20% Similarity=0.177 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH
Q 012379 126 LSDKLDKEVDDVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLE------AAIEETEKQNAEVNAELKEL 199 (465)
Q Consensus 126 Lle~L~~qle~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~------~eL~~LE~e~~~l~~el~~l 199 (465)
|+.++-...+.--.-.+.|+..||.+..... +-.......++|..+..+|. ..|..||+|....+++..-.
T Consensus 74 Ll~e~ge~e~~~a~~~d~yR~~LK~IR~~E~---svqp~R~~R~~l~~~I~kLk~k~P~s~kl~~LeqELvraEae~lva 150 (234)
T 3plt_A 74 LIYELGELQDQFIDKYDQYRVTLKSIRNIEA---SVQPSRDRKEKITDEIAHLKYKDPQSTKIPVLEQELVRAEAESLVA 150 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHhhHH
Confidence 3444444444444456678888888764211 00112222233333333333 34556666655555555444
Q ss_pred HHHHHHHH
Q 012379 200 ELKSKRFK 207 (465)
Q Consensus 200 e~e~~~L~ 207 (465)
|.++..+.
T Consensus 151 EAqL~n~k 158 (234)
T 3plt_A 151 EAQLSNIT 158 (234)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhH
Confidence 44444443
No 239
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=20.63 E-value=3.4e+02 Score=21.89 Aligned_cols=36 Identities=14% Similarity=0.237 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 171 IEEEERKLEAAIEETEKQNAEVNAELKELELKSKRF 206 (465)
Q Consensus 171 Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~~~L 206 (465)
|.--.++|.+++++|-.|.+.+..|+.+++.-..++
T Consensus 28 Lnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~ 63 (77)
T 2w83_C 28 LNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKL 63 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 445556677778888777777777777776554444
No 240
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=20.47 E-value=2.6e+02 Score=20.55 Aligned_cols=15 Identities=33% Similarity=0.629 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q 012379 186 EKQNAEVNAELKELE 200 (465)
Q Consensus 186 E~e~~~l~~el~~le 200 (465)
|...+.++..|..|+
T Consensus 30 endnanlekdianle 44 (56)
T 3he4_A 30 ENDNANLEKDIANLE 44 (56)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hcccchHHHHHHHHH
Confidence 333333333333333
No 241
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=20.36 E-value=3.6e+02 Score=22.13 Aligned_cols=17 Identities=18% Similarity=0.208 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 012379 125 VLSDKLDKEVDDVTRDI 141 (465)
Q Consensus 125 ~Lle~L~~qle~~~~E~ 141 (465)
.|.+.++.+|..+..++
T Consensus 15 elFe~YE~df~~l~~~i 31 (102)
T 2qyw_A 15 EHFEKLHEIFRGLLEDL 31 (102)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45666666666655554
No 242
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=20.30 E-value=4.6e+02 Score=23.33 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 163 DFLKEKLKIEEEERKLEAAIEETEK 187 (465)
Q Consensus 163 ~l~~e~~~Le~EE~~L~~eL~~LE~ 187 (465)
+|.++..+|+.+|+++..+|+.+-+
T Consensus 25 ~Ldr~~~kle~~ekk~~~~Ikka~k 49 (179)
T 2gd5_A 25 VVDRQIRDIQREEEKVKRSVKDAAK 49 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666665543
Done!