Query 012379
Match_columns 465
No_of_seqs 154 out of 248
Neff 4.9
Searched_HMMs 13730
Date Mon Mar 25 08:18:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012379.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/012379hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2efla1 a.238.1.4 (A:1-288) Fo 71.8 29 0.0021 29.7 16.3 9 358-366 263-271 (288)
2 d1fxka_ a.2.5.1 (A:) Prefoldin 67.4 12 0.00085 29.2 8.4 33 171-203 70-102 (107)
3 d1seta1 a.2.7.1 (A:1-110) Sery 63.3 30 0.0022 26.7 10.8 15 130-144 33-47 (110)
4 d1seta1 a.2.7.1 (A:1-110) Sery 61.5 32 0.0023 26.5 11.7 34 166-199 28-61 (110)
5 d1fxkc_ a.2.5.1 (C:) Prefoldin 60.9 23 0.0016 28.1 9.2 27 126-152 16-42 (133)
6 d1fxka_ a.2.5.1 (A:) Prefoldin 60.9 33 0.0024 26.4 10.8 26 224-249 74-99 (107)
7 d2azeb1 e.63.1.2 (B:201-301) T 52.6 11 0.00081 29.8 5.6 31 177-207 5-35 (101)
8 d1qvra2 c.37.1.20 (A:149-535) 48.8 29 0.0021 32.9 9.1 23 113-136 180-202 (387)
9 d2efka1 a.238.1.4 (A:10-288) C 43.9 87 0.0064 26.3 16.4 9 358-366 254-262 (279)
10 d1wu9a1 a.245.1.1 (A:191-249) 40.9 16 0.0012 26.3 4.4 26 127-152 10-35 (59)
11 d2efka1 a.238.1.4 (A:10-288) C 37.1 1.1E+02 0.0081 25.5 15.9 26 127-152 90-115 (279)
12 d1nkpa_ a.38.1.1 (A:) Myc prot 34.3 32 0.0024 25.5 5.5 30 169-198 55-84 (88)
13 d1ykhb1 a.252.1.1 (B:2-130) RN 31.3 1.2E+02 0.0088 24.2 9.9 32 160-191 85-116 (129)
14 d2azeb1 e.63.1.2 (B:201-301) T 31.3 39 0.0029 26.4 5.7 17 192-208 6-22 (101)
15 d1lrza1 a.2.7.4 (A:245-309) Me 30.2 90 0.0066 22.4 9.0 8 192-199 42-49 (65)
16 d2efla1 a.238.1.4 (A:1-288) Fo 30.0 1.5E+02 0.011 24.8 16.9 23 130-152 102-124 (288)
17 d1fxkc_ a.2.5.1 (C:) Prefoldin 28.5 1.2E+02 0.0089 23.4 13.9 29 220-248 100-128 (133)
18 d1ivsa1 a.2.7.3 (A:797-862) Va 28.5 89 0.0065 21.8 7.5 22 131-152 3-24 (66)
19 d1nkpb_ a.38.1.1 (B:) Max prot 23.8 40 0.0029 24.7 4.2 30 169-198 50-79 (83)
20 d1bjta_ e.11.1.1 (A:) DNA topo 22.8 65 0.0047 33.2 7.1 19 117-135 567-585 (760)
21 d2ap3a1 a.24.27.1 (A:12-196) H 21.8 1.5E+02 0.011 22.0 16.1 19 180-198 116-134 (185)
22 d2fupa1 a.47.5.1 (A:1-130) Hyp 20.9 1.7E+02 0.012 22.3 12.1 59 136-196 10-68 (130)
23 d1nkpa_ a.38.1.1 (A:) Myc prot 20.6 1.3E+02 0.0093 21.9 6.7 30 174-203 53-82 (88)
24 d1gqea_ e.38.1.1 (A:) Polypept 20.0 3.2E+02 0.023 25.1 14.4 19 239-257 101-119 (362)
No 1
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=71.83 E-value=29 Score=29.71 Aligned_cols=9 Identities=11% Similarity=0.040 Sum_probs=4.2
Q ss_pred HHHHHHHhc
Q 012379 358 KDFAEFANS 366 (465)
Q Consensus 358 ~q~~~~~~~ 366 (465)
.++..|++.
T Consensus 263 ~D~~~fi~~ 271 (288)
T d2efla1 263 NDSQLVIEA 271 (288)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344445543
No 2
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=67.39 E-value=12 Score=29.24 Aligned_cols=33 Identities=21% Similarity=0.359 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 171 IEEEERKLEAAIEETEKQNAEVNAELKELELKS 203 (465)
Q Consensus 171 Le~EE~~L~~eL~~LE~e~~~l~~el~~le~e~ 203 (465)
|.+.-+.+..+++.++++...+..++.+++.++
T Consensus 70 l~~~~e~l~~~i~~l~~q~~~l~~~l~~~~~~l 102 (107)
T d1fxka_ 70 LQEKLETLQLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555555555555555554443
No 3
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=63.35 E-value=30 Score=26.72 Aligned_cols=15 Identities=27% Similarity=0.660 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 012379 130 LDKEVDDVTRDIEAY 144 (465)
Q Consensus 130 L~~qle~~~~E~d~Y 144 (465)
|+.+...+..+.+..
T Consensus 33 ld~~rr~l~~~~e~l 47 (110)
T d1seta1 33 LDREVQELKKRLQEV 47 (110)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 4
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=61.47 E-value=32 Score=26.50 Aligned_cols=34 Identities=15% Similarity=0.343 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 166 KEKLKIEEEERKLEAAIEETEKQNAEVNAELKEL 199 (465)
Q Consensus 166 ~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el~~l 199 (465)
.++.+|.++.+.+..+++.|..++.++..++...
T Consensus 28 d~i~~ld~~rr~l~~~~e~l~~~rN~~sk~i~k~ 61 (110)
T d1seta1 28 EALLALDREVQELKKRLQEVQTERNQVAKRVPKA 61 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4666778888888899999988888888877654
No 5
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=60.94 E-value=23 Score=28.08 Aligned_cols=27 Identities=15% Similarity=0.245 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012379 126 LSDKLDKEVDDVTRDIEAYEACLQRLE 152 (465)
Q Consensus 126 Lle~L~~qle~~~~E~d~Y~~fL~~L~ 152 (465)
-++.|+.+++.++.....|....+.|+
T Consensus 16 ~l~~l~~~i~~l~~~~~e~~~~~~~L~ 42 (133)
T d1fxkc_ 16 QVELIQQQMEAVRATISELEILEKTLS 42 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666666666665554443
No 6
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=60.93 E-value=33 Score=26.44 Aligned_cols=26 Identities=19% Similarity=0.151 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012379 224 LIAHQEERDAISSKIEVSQAHLELLK 249 (465)
Q Consensus 224 l~~~~~e~~sl~~q~~~~~~~LdkL~ 249 (465)
+..+..+...+..++.....+++.++
T Consensus 74 ~e~l~~~i~~l~~q~~~l~~~l~~~~ 99 (107)
T d1fxka_ 74 LETLQLREKTIERQEERVMKKLQEMQ 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444443
No 7
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=52.55 E-value=11 Score=29.77 Aligned_cols=31 Identities=3% Similarity=0.129 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 177 KLEAAIEETEKQNAEVNAELKELELKSKRFK 207 (465)
Q Consensus 177 ~L~~eL~~LE~e~~~l~~el~~le~e~~~L~ 207 (465)
.|.+||+.|+.+..+|++.|..++.+++.+.
T Consensus 5 ~L~~El~~L~~~E~~LD~li~~~~~~L~~lt 35 (101)
T d2azeb1 5 GLTQDLRQLQESEQQLDHLMNICTTQLRLLS 35 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3555666666666666666666655555554
No 8
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=48.84 E-value=29 Score=32.93 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=14.5
Q ss_pred ccCCcchHHHHHHHHHHHHHHHHH
Q 012379 113 QVEQPLCLECMRVLSDKLDKEVDD 136 (465)
Q Consensus 113 ~iDhPLC~eC~d~Lle~L~~qle~ 136 (465)
.|+-|-=.+|...| ..+...|+.
T Consensus 180 ~v~ep~~~~~~~il-~~~~~~~e~ 202 (387)
T d1qvra2 180 YVDEPTVEETISIL-RGLKEKYEV 202 (387)
T ss_dssp EECCCCHHHHHHHH-HHHHHHHHH
T ss_pred cCCCCcHHHHHHHH-HHHHHHHHh
Confidence 56667666766664 456666654
No 9
>d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=43.89 E-value=87 Score=26.28 Aligned_cols=9 Identities=11% Similarity=0.003 Sum_probs=4.3
Q ss_pred HHHHHHHhc
Q 012379 358 KDFAEFANS 366 (465)
Q Consensus 358 ~q~~~~~~~ 366 (465)
.++..|++.
T Consensus 254 ~D~~~f~~~ 262 (279)
T d2efka1 254 NDSHVLIEL 262 (279)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344555543
No 10
>d1wu9a1 a.245.1.1 (A:191-249) Microtubule-associated protein EB1, C-terminal dimerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=40.93 E-value=16 Score=26.30 Aligned_cols=26 Identities=23% Similarity=0.405 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012379 127 SDKLDKEVDDVTRDIEAYEACLQRLE 152 (465)
Q Consensus 127 le~L~~qle~~~~E~d~Y~~fL~~L~ 152 (465)
+..|+..++.+++|||-|-.-|+.++
T Consensus 10 i~elk~~v~~lEkERdFYF~KLRdIE 35 (59)
T d1wu9a1 10 VNVLKLTVEDLEKERDFYFGKLRNIE 35 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688999999999999999998876
No 11
>d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=37.14 E-value=1.1e+02 Score=25.55 Aligned_cols=26 Identities=12% Similarity=0.020 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012379 127 SDKLDKEVDDVTRDIEAYEACLQRLE 152 (465)
Q Consensus 127 le~L~~qle~~~~E~d~Y~~fL~~L~ 152 (465)
++.|..-+.+.++.++.+....+++.
T Consensus 90 ~~~l~~~~~~~~~~~k~~~~~~~~~~ 115 (279)
T d2efka1 90 CLELTKYSQEMKQERKMHFQEGRRAQ 115 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444555555554444
No 12
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.32 E-value=32 Score=25.53 Aligned_cols=30 Identities=23% Similarity=0.402 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 169 LKIEEEERKLEAAIEETEKQNAEVNAELKE 198 (465)
Q Consensus 169 ~~Le~EE~~L~~eL~~LE~e~~~l~~el~~ 198 (465)
..|+++...|..+++.+.++.+.+.+++..
T Consensus 55 ~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~ 84 (88)
T d1nkpa_ 55 LSVQAEEQKLISEEDLLRKRREQLKHKLEQ 84 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555655555555555555554443
No 13
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=31.34 E-value=1.2e+02 Score=24.23 Aligned_cols=32 Identities=16% Similarity=0.153 Sum_probs=14.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 160 SEADFLKEKLKIEEEERKLEAAIEETEKQNAE 191 (465)
Q Consensus 160 ~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~ 191 (465)
++++-.+.+.+|++|-....+++++.-++.++
T Consensus 85 see~Q~~~i~~Le~E~~~~~~el~~~v~e~e~ 116 (129)
T d1ykhb1 85 SAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEK 116 (129)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455555555544444444443333
No 14
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.29 E-value=39 Score=26.37 Aligned_cols=17 Identities=12% Similarity=0.438 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 012379 192 VNAELKELELKSKRFKE 208 (465)
Q Consensus 192 l~~el~~le~e~~~L~~ 208 (465)
|.+|+.+|+.+.++|++
T Consensus 6 L~~El~~L~~~E~~LD~ 22 (101)
T d2azeb1 6 LTQDLRQLQESEQQLDH 22 (101)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444443
No 15
>d1lrza1 a.2.7.4 (A:245-309) Methicillin resistance protein FemA probable tRNA-binding arm {Staphylococcus aureus [TaxId: 1280]}
Probab=30.24 E-value=90 Score=22.40 Aligned_cols=8 Identities=13% Similarity=0.231 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 012379 192 VNAELKEL 199 (465)
Q Consensus 192 l~~el~~l 199 (465)
+.+++...
T Consensus 42 l~~Q~~s~ 49 (65)
T d1lrza1 42 LQQQLDAN 49 (65)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 16
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.95 E-value=1.5e+02 Score=24.78 Aligned_cols=23 Identities=9% Similarity=0.114 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 012379 130 LDKEVDDVTRDIEAYEACLQRLE 152 (465)
Q Consensus 130 L~~qle~~~~E~d~Y~~fL~~L~ 152 (465)
|..-..+.++.++.+.....++.
T Consensus 102 l~~~~~~~~~~~K~~~~~~~k~~ 124 (288)
T d2efla1 102 LARYVQELKQERKSNFHDGRKAQ 124 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444443
No 17
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=28.54 E-value=1.2e+02 Score=23.38 Aligned_cols=29 Identities=21% Similarity=0.124 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 220 FQFQLIAHQEERDAISSKIEVSQAHLELL 248 (465)
Q Consensus 220 ~q~ql~~~~~e~~sl~~q~~~~~~~LdkL 248 (465)
++..+..+.++...+..++......+++|
T Consensus 100 l~~~~~~l~~~~~~~~~~i~~l~~~~~~l 128 (133)
T d1fxkc_ 100 LESTLQKMGENLRAITDIMMKLSPQAEEL 128 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555555555555555444
No 18
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=28.49 E-value=89 Score=21.78 Aligned_cols=22 Identities=9% Similarity=0.074 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 012379 131 DKEVDDVTRDIEAYEACLQRLE 152 (465)
Q Consensus 131 ~~qle~~~~E~d~Y~~fL~~L~ 152 (465)
+.+...++++.+.+...+.+++
T Consensus 3 ~~E~~RL~K~l~kl~~~i~~~~ 24 (66)
T d1ivsa1 3 EEWRRRQEKRLKELLALAERSQ 24 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555554443
No 19
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.85 E-value=40 Score=24.72 Aligned_cols=30 Identities=13% Similarity=0.318 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 169 LKIEEEERKLEAAIEETEKQNAEVNAELKE 198 (465)
Q Consensus 169 ~~Le~EE~~L~~eL~~LE~e~~~l~~el~~ 198 (465)
..|..+...+..+++.+.++...+..++..
T Consensus 50 ~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~ 79 (83)
T d1nkpb_ 50 QYMRRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666665555555443
No 20
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment (residues 410-1202) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=22.77 E-value=65 Score=33.20 Aligned_cols=19 Identities=11% Similarity=0.025 Sum_probs=8.0
Q ss_pred cchHHHHHHHHHHHHHHHH
Q 012379 117 PLCLECMRVLSDKLDKEVD 135 (465)
Q Consensus 117 PLC~eC~d~Lle~L~~qle 135 (465)
|-...-.+.|-+.++-+++
T Consensus 567 ~k~~sl~eIL~~f~~~Rle 585 (760)
T d1bjta_ 567 KKYNSVNEILSEFYYVRLE 585 (760)
T ss_dssp EEESSHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHH
Confidence 4443344444444444433
No 21
>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}
Probab=21.80 E-value=1.5e+02 Score=21.98 Aligned_cols=19 Identities=11% Similarity=-0.038 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 012379 180 AAIEETEKQNAEVNAELKE 198 (465)
Q Consensus 180 ~eL~~LE~e~~~l~~el~~ 198 (465)
..+..+......+..++..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~ 134 (185)
T d2ap3a1 116 KLHSDYAKAYKKAVNSEKT 134 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHH
Confidence 3333333333333333333
No 22
>d2fupa1 a.47.5.1 (A:1-130) Hypothetical protein PA3352 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=20.88 E-value=1.7e+02 Score=22.32 Aligned_cols=59 Identities=20% Similarity=0.219 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 136 DVTRDIEAYEACLQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIEETEKQNAEVNAEL 196 (465)
Q Consensus 136 ~~~~E~d~Y~~fL~~L~~~~~~~~~ee~l~~e~~~Le~EE~~L~~eL~~LE~e~~~l~~el 196 (465)
.+..|+..|..++.-++.+.. .+..-| .+++..+-.++..+..++..++..+.++-.++
T Consensus 10 ~L~~e~~~~~~L~~LL~~e~~-aL~~~d-~~~Le~l~~~k~~ll~~l~~~~~~R~~~l~~~ 68 (130)
T d2fupa1 10 LFAEDIGHANQLLQLVDEEFQ-ALERRE-LPVLQQLLGAKQPLMQQLERNGRARAEILREA 68 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHTTC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344577788888887765531 000001 12556677778888888888888887765543
No 23
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.62 E-value=1.3e+02 Score=21.92 Aligned_cols=30 Identities=10% Similarity=0.018 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012379 174 EERKLEAAIEETEKQNAEVNAELKELELKS 203 (465)
Q Consensus 174 EE~~L~~eL~~LE~e~~~l~~el~~le~e~ 203 (465)
-...|.+++..++.+.+.+..+...|..+.
T Consensus 53 yI~~L~~~~~~l~~~~~~l~~~~~~L~~~l 82 (88)
T d1nkpa_ 53 YILSVQAEEQKLISEEDLLRKRREQLKHKL 82 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555544444444443
No 24
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=20.03 E-value=3.2e+02 Score=25.14 Aligned_cols=19 Identities=11% Similarity=0.214 Sum_probs=11.1
Q ss_pred HHHHHHHHHHhhcccCCCc
Q 012379 239 EVSQAHLELLKRTNVLNDA 257 (465)
Q Consensus 239 ~~~~~~LdkL~ktNV~Nd~ 257 (465)
......++.|.-.-++++-
T Consensus 101 ~~l~~~l~~le~~ll~~~~ 119 (362)
T d1gqea_ 101 DALEEKLAQLEFRRMFSGE 119 (362)
T ss_dssp HHHHHHHHHHGGGGGCCST
T ss_pred HHHhhhhhHHHHhhcccCc
Confidence 3444556677766666654
Done!