BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012380
(465 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SS9|A Chain A, Crystal Structural Analysis Of Active Site Mutant Q189e Of
Lgtc
Length = 311
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 31/51 (60%)
Query: 327 LSLMNHLRIYIPELFPDLNKILFLDDDVVVQHDLSSLLELDLNGKVVGAVV 377
+S+ + R+ + E D +K+L+LD DV+V+ L+ L + DL +GA +
Sbjct: 79 ISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGACI 129
>pdb|1G9R|A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex
With Mn And Udp-2f-Galactose
pdb|1GA8|A Chain A, Crystal Structure Of Galacosyltransferase Lgtc In Complex
With Donor And Acceptor Sugar Analogs
Length = 311
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 31/51 (60%)
Query: 327 LSLMNHLRIYIPELFPDLNKILFLDDDVVVQHDLSSLLELDLNGKVVGAVV 377
+S+ + R+ + E D +K+L+LD DV+V+ L+ L + DL +GA +
Sbjct: 79 ISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASI 129
>pdb|3DM5|A Chain A, Structures Of Srp54 And Srp19, The Two Proteins Assembling
The Ribonucleic Core Of The Signal Recognition Particle
From The Archaeon Pyrococcus Furiosus.
pdb|3DM5|B Chain B, Structures Of Srp54 And Srp19, The Two Proteins Assembling
The Ribonucleic Core Of The Signal Recognition Particle
From The Archaeon Pyrococcus Furiosus
Length = 443
Score = 35.4 bits (80), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 8/102 (7%)
Query: 110 GGGRIQGTLDSFNELVKEVTSKRQDIKAFAFKTKAMLLKMEHEVQSSRQRESIYWHLAS- 168
G G IQG L+ F EL KEV K +DI+ F + K L M ++++ R+ + L
Sbjct: 295 GLGDIQGLLEKFKELEKEVEIKEEDIERF-LRGKFTLKDMYAQLEAMRKMGPLKQILRMI 353
Query: 169 HGVPKSLHCLCLKLAEE------YAVNAMARSRLPSPEYVSH 204
G+ SL + + EE +++M L +PE +++
Sbjct: 354 PGLGYSLPDDVISIGEERLKKFKVIMDSMTEEELLNPEIINY 395
>pdb|1YR2|A Chain A, Structural And Mechanistic Analysis Of Two Prolyl
Endopeptidases: Role Of Inter-Domain Dynamics In
Catalysis And Specificity
Length = 741
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 6/46 (13%)
Query: 358 HDL-SSLLELDLNGKVVGAV----VGSSCGDNCCPGRKYKDYLNFS 398
HD S +L DL+GK GAV +GS+ G + PG ++ YL+FS
Sbjct: 382 HDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHA-YLSFS 426
>pdb|1E4F|T Chain T, Ftsa (Apo Form) From Thermotoga Maritima
pdb|4A2A|A Chain A, Thermotoga Maritima Ftsa:ftsz(336-351)
pdb|4A2A|B Chain B, Thermotoga Maritima Ftsa:ftsz(336-351)
pdb|4A2B|A Chain A, Thermotoga Maritima Ftsa With Atp Gamma S
Length = 419
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 291 EAHRLIWSH---YYKNLKHEDFEYEGENRRCLEVLSPSCLSLMNHLRI 335
E+ RLI +H Y +LK E+ +Y G + ++ + LS++ H R+
Sbjct: 255 ESERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHARL 302
>pdb|1E4G|T Chain T, Ftsa (Atp-Bound Form) From Thermotoga Maritima
Length = 419
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 291 EAHRLIWSH---YYKNLKHEDFEYEGENRRCLEVLSPSCLSLMNHLRI 335
E+ RLI +H Y +LK E+ +Y G + ++ + LS++ H R+
Sbjct: 255 ESERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHARL 302
>pdb|3RIU|C Chain C, Crystal Structure Of Drosophila Hexameric C3po Formed By
Truncated Translin And Trax
Length = 269
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 254 MHSWFAINSFRSAVVEVKGLHQYDWSQEVNVGVKEMLEAHRLIWSHYYKNLKHEDFEYEG 313
++ A+N FR+ +E++ Y + + G++E +EA+ Y + L HED E E
Sbjct: 61 LNKLIAVN-FRAVALELRDQDVYQFRSSYSPGLQEFIEAY-----TYXEYLCHEDAEGEN 114
Query: 314 ENR 316
E +
Sbjct: 115 ETK 117
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,359,733
Number of Sequences: 62578
Number of extensions: 522869
Number of successful extensions: 1166
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1160
Number of HSP's gapped (non-prelim): 13
length of query: 465
length of database: 14,973,337
effective HSP length: 102
effective length of query: 363
effective length of database: 8,590,381
effective search space: 3118308303
effective search space used: 3118308303
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)