Query 012380
Match_columns 465
No_of_seqs 269 out of 1166
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 08:19:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012380.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012380hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tzt_A Glycosyl transferase fa 100.0 1.3E-34 4.4E-39 286.3 13.0 199 210-464 5-206 (276)
2 1g9r_A Glycosyl transferase; a 100.0 5.4E-33 1.9E-37 278.1 13.9 198 211-464 1-201 (311)
3 1ll2_A Glycogenin-1; protein-s 99.7 1.6E-17 5.3E-22 168.5 13.5 95 328-463 80-174 (333)
4 3u2u_A Glycogenin-1, GN-1, GN1 99.6 1.9E-15 6.5E-20 148.8 13.2 93 329-461 82-174 (263)
5 3pmr_A Amyloid-like protein 1; 35.2 56 0.0019 31.0 5.8 28 135-162 67-94 (219)
6 3umh_A Amyloid beta A4 protein 29.8 61 0.0021 30.6 5.0 29 134-162 59-87 (211)
7 2lse_A Four helix bundle prote 34.1 12 0.00043 29.9 0.0 53 91-149 7-61 (101)
8 1p68_A De novo designed protei 23.1 41 0.0014 26.9 2.2 22 84-105 52-73 (102)
9 1deq_A Fibrinogen (alpha chain 16.7 1.2E+02 0.0039 31.1 4.3 20 135-154 111-130 (390)
10 3arc_L Photosystem II reaction 13.7 1.1E+02 0.0039 20.9 2.3 20 38-57 12-31 (37)
No 1
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0
Probab=100.00 E-value=1.3e-34 Score=286.34 Aligned_cols=199 Identities=15% Similarity=0.133 Sum_probs=130.8
Q ss_pred ccEEEEEeCCccc--cchhhhHhhhcCCCCCceEEEEEeCCCCCcccchhhhhcccccchheecccccccccchhhhhHH
Q 012380 210 FHHVVLLTDNVLA--ASVVVSSTVQNSARPEKLVFHIVTDKKTYTPMHSWFAINSFRSAVVEVKGLHQYDWSQEVNVGVK 287 (465)
Q Consensus 210 ~ihIv~~sDn~la--~sVvI~Siv~Ns~~p~~i~FHIvtD~i~~~~m~~Wf~~n~~~~a~v~v~ni~~F~wl~~~~~~vl 287 (465)
.+|||+++|+.|. ++|+|+|+++|+++ ++++|||++++++.+..+. +
T Consensus 5 ~i~I~~~~d~~Y~~~~~v~i~Sl~~~~~~-~~~~~~il~~~is~~~~~~------------------------------L 53 (276)
T 3tzt_A 5 ADALLLTLDENYIPQMKVLMTSIYINNPG-RIFDVYLIHSRISEDKLKD------------------------------L 53 (276)
T ss_dssp CEEEEEECCGGGHHHHHHHHHHHHHHSTT-CCEEEEEEESCCCHHHHHH------------------------------H
T ss_pred eEEEEEEeCHhHHHHHHHHHHHHHHhCCC-CceEEEEEeCCCCHHHHHH------------------------------H
Confidence 4899999998664 89999999999986 6799999999997532110 0
Q ss_pred HHHHHhhhHHHhhcccCcccccccchhhhhhhccCCCCccchhhhHHhhhccccC-CCCcEEEEecceeeecChHHHHhc
Q 012380 288 EMLEAHRLIWSHYYKNLKHEDFEYEGENRRCLEVLSPSCLSLMNHLRIYIPELFP-DLNKILFLDDDVVVQHDLSSLLEL 366 (465)
Q Consensus 288 ~~le~~~~i~~~y~~~~~~~~i~~p~~~~~~l~~~~~~~iS~~~y~Rf~LPeifP-~ldKVLYLD~DVVVq~DLseLw~i 366 (465)
+++-....+...++ .++ ++.+. . ....+++|..+|+||++|+++| +++||||||+|+||++||++||++
T Consensus 54 ~~~~~~~~~~i~~~------~~~-~~~~~-~--~~~~~~~s~~~~~rl~~~~l~p~~~~kvlylD~D~iv~~di~~L~~~ 123 (276)
T 3tzt_A 54 GEDLKKFSYTLYPI------RAT-DDLFS-F--AKVTDRYPKEMYYRLLAGEFLPENLGEILYLDPDMLVINPLDDLLRT 123 (276)
T ss_dssp HHHHHTTTCEEEEE------ECC-----------------CHHHHHHHTHHHHSCTTCCEEEEECSSEEECSCSHHHHTC
T ss_pred HHHHHHcCCEEEEE------EeC-HHHHh-c--CccccccCHHHHHHHHHHHHcccccCeEEEEeCCeeecCCHHHHhhc
Confidence 00000000000111 111 01111 1 1223578999999999999999 799999999999999999999999
Q ss_pred CCCCCeEEEEeccCCCCCCCCccccccccccCccccccCCCCCCCccccceeeEehHHHHHhcHHHHHHHHHHhhccccc
Q 012380 367 DLNGKVVGAVVGSSCGDNCCPGRKYKDYLNFSYPIISSNFDHDHCAWLYGMNVLDLEAWRRTNITATYHKWLKLEHFHQL 446 (465)
Q Consensus 367 DL~gkvigAVeDc~~~~~~~~~~r~~~yLnfs~p~i~~~f~~~~cyFNSGVlLiDL~~WRk~nite~~~~~l~~n~~~~l 446 (465)
||+|+++|||+||.... ..++.+ ..++.+..||||||||||||++||++++++++++|++++..+.
T Consensus 124 dl~~~~~aav~d~~~~~-------~~~~~~------~~~l~~~~~yfNsGV~linl~~~R~~~~~~~~~~~~~~~~~~~- 189 (276)
T 3tzt_A 124 DISDYILAAASHTGKTD-------MANNVN------RIRLGTDTDYYNSGLLLINLKRAREEIDPDEIFSFVEDNHMNL- 189 (276)
T ss_dssp CCTTSSEEEEEC---------------------------------CEEEEEEEEEHHHHHHHCCHHHHHHHHHHC-----
T ss_pred CCCCCeEEEEEecccch-------HHHHHH------HhcCCCCCCeEEeeEEEEEHHHHHhhhHHHHHHHHHHhccccc-
Confidence 99999999999997531 111111 1234445699999999999999999999999999999987654
Q ss_pred ccccchhHHHHHhcCccC
Q 012380 447 CLLWMVTCILLILHGTWL 464 (465)
Q Consensus 447 ~~~~d~~~l~l~F~~rwl 464 (465)
.++||+++|++|+|+|.
T Consensus 190 -~~~DQd~LN~~f~~~~~ 206 (276)
T 3tzt_A 190 -LLPDQDILNAMYGDRIY 206 (276)
T ss_dssp -----CHHHHHHHGGGEE
T ss_pred -cCCChhHHHHHHhCCEE
Confidence 46899999999999985
No 2
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*
Probab=100.00 E-value=5.4e-33 Score=278.06 Aligned_cols=198 Identities=18% Similarity=0.252 Sum_probs=145.9
Q ss_pred cEEEEEeCCccc--cchhhhHh-hhcCCCCCceEEEEEeCCCCCcccchhhhhcccccchheecccccccccchhhhhHH
Q 012380 211 HHVVLLTDNVLA--ASVVVSST-VQNSARPEKLVFHIVTDKKTYTPMHSWFAINSFRSAVVEVKGLHQYDWSQEVNVGVK 287 (465)
Q Consensus 211 ihIv~~sDn~la--~sVvI~Si-v~Ns~~p~~i~FHIvtD~i~~~~m~~Wf~~n~~~~a~v~v~ni~~F~wl~~~~~~vl 287 (465)
|||++++|+.|. ++|+++|+ +.|++ .+++|||++++++.+..+. +
T Consensus 1 m~I~~~~d~~Y~~~~~vli~Sl~l~~~~--~~~~f~il~~~ls~~~~~~------------------------------L 48 (311)
T 1g9r_A 1 MDIVFAADDNYAAYLCVAAKSVEAAHPD--TEIRFHVLDAGISEANRAA------------------------------V 48 (311)
T ss_dssp CEEEEEECGGGHHHHHHHHHHHHHTCTT--SCCEEEEEESSCCHHHHHH------------------------------H
T ss_pred CeEEEECCHhHHHHHHHHHHHHHHHcCC--CCceEEEEECCCCHHHHHH------------------------------H
Confidence 699999997554 88999999 99875 4799999999987542110 0
Q ss_pred HHHHHhhhHHHhhcccCcccccccchhhhhhhccCCCCccchhhhHHhhhccccCCCCcEEEEecceeeecChHHHHhcC
Q 012380 288 EMLEAHRLIWSHYYKNLKHEDFEYEGENRRCLEVLSPSCLSLMNHLRIYIPELFPDLNKILFLDDDVVVQHDLSSLLELD 367 (465)
Q Consensus 288 ~~le~~~~i~~~y~~~~~~~~i~~p~~~~~~l~~~~~~~iS~~~y~Rf~LPeifP~ldKVLYLD~DVVVq~DLseLw~iD 367 (465)
+++.........++ .++ ++.+. .+. ....++|..+|+||++|++||+++||||||+|+||++||++||++|
T Consensus 49 ~~~~~~~~~~i~~~------~~~-~~~~~-~~~-~~~~~~s~~~y~Rl~l~~ll~~~~kvlyLD~D~iv~~di~eL~~~~ 119 (311)
T 1g9r_A 49 AANLRGGGGNIRFI------DVN-PEDFA-GFP-LNIRHISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTD 119 (311)
T ss_dssp HHHSGGGTTTEEEE------ECC-GGGGT-TSC-CCCTTCCGGGGGGGGHHHHCCSCSCEEEECSSEEECSCCHHHHTCC
T ss_pred HHHHHHcCCEEEEE------EcC-HHHHh-cCc-cccccCCHHHHHHHHHHHHhhhcCEEEEEcCCeEeccCHHHHhccC
Confidence 00000000000011 111 01111 111 1246889999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEeccCCCCCCCCccccccccccCccccccCCCCCCCccccceeeEehHHHHHhcHHHHHHHHHHhhcccccc
Q 012380 368 LNGKVVGAVVGSSCGDNCCPGRKYKDYLNFSYPIISSNFDHDHCAWLYGMNVLDLEAWRRTNITATYHKWLKLEHFHQLC 447 (465)
Q Consensus 368 L~gkvigAVeDc~~~~~~~~~~r~~~yLnfs~p~i~~~f~~~~cyFNSGVlLiDL~~WRk~nite~~~~~l~~n~~~~l~ 447 (465)
|+|+++|||+||.... ...+.+.+ ++.+..|||||||||||+++||+.++++++++|++++..+.
T Consensus 120 l~~~~~aav~d~~~~~----~~~~~~~~---------~~~~~~~yfNsGv~linl~~~r~~~~~~~~~~~~~~~~~~~-- 184 (311)
T 1g9r_A 120 LGDNWLGASIDLFVER----QEGYKQKI---------GMADGEYYFNAGVLLINLKKWRRHDIFKMSSEWVEQYKDVM-- 184 (311)
T ss_dssp CTTCSEEEEECHHHHT----STTHHHHT---------TCCTTSCCEEEEEEEECHHHHTTSCHHHHHHHHHHHHTTTC--
T ss_pred CCCcEEEEEeccchhh----hHHHHHhc---------CCCCCCceEeeeeeeeeHHHHHhcchHHHHHHHHHhccCcC--
Confidence 9999999999986320 11222223 34556799999999999999999999999999999987653
Q ss_pred cccchhHHHHHhcCccC
Q 012380 448 LLWMVTCILLILHGTWL 464 (465)
Q Consensus 448 ~~~d~~~l~l~F~~rwl 464 (465)
.++||+++|++|+|+|.
T Consensus 185 ~~~DQd~lN~~f~~~~~ 201 (311)
T 1g9r_A 185 QYQDQDILNGLFKGGVC 201 (311)
T ss_dssp SSHHHHHHHHHHTTSEE
T ss_pred ccCCcCHHHHHHcCCEE
Confidence 57899999999999884
No 3
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*
Probab=99.73 E-value=1.6e-17 Score=168.50 Aligned_cols=95 Identities=13% Similarity=0.094 Sum_probs=77.3
Q ss_pred chhhhHHhhhccccCCCCcEEEEecceeeecChHHHHhcCCCCCeEEEEeccCCCCCCCCccccccccccCccccccCCC
Q 012380 328 SLMNHLRIYIPELFPDLNKILFLDDDVVVQHDLSSLLELDLNGKVVGAVVGSSCGDNCCPGRKYKDYLNFSYPIISSNFD 407 (465)
Q Consensus 328 S~~~y~Rf~LPeifP~ldKVLYLD~DVVVq~DLseLw~iDL~gkvigAVeDc~~~~~~~~~~r~~~yLnfs~p~i~~~f~ 407 (465)
+..+|.||++|++ ++++||||||+|+||++||++||+++ .+|||.|.+-
T Consensus 80 ~~~t~~Kl~i~~l-~~ydrvlYLDaD~lv~~di~eLf~~~----~~aAv~d~~~-------------------------- 128 (333)
T 1ll2_A 80 LGVTLTKLHCWSL-TQYSKCVFMDADTLVLANIDDLFERE----ELSAAPDPGW-------------------------- 128 (333)
T ss_dssp GHHHHHHGGGGGC-TTCSEEEEECTTEEECSCCGGGGGSC----SSEEEECSSS--------------------------
T ss_pred hHHHHHHHHHhHh-cCCCeEEEEeCCEEeccCHHHHhCCC----ceeEEecCCC--------------------------
Confidence 3589999999996 78999999999999999999999997 4788887420
Q ss_pred CCCCccccceeeEehHHHHHhcHHHHHHHHHHhhcccccccccchhHHHHHhcCcc
Q 012380 408 HDHCAWLYGMNVLDLEAWRRTNITATYHKWLKLEHFHQLCLLWMVTCILLILHGTW 463 (465)
Q Consensus 408 ~~~cyFNSGVlLiDL~~WRk~nite~~~~~l~~n~~~~l~~~~d~~~l~l~F~~rw 463 (465)
.+||||||||||+.. ++.++++++++++. -+..+||+++|.+|.+ |
T Consensus 129 --~~~fNsGvmlin~~~----~~~~~l~~~~~~~~---~~~~~DQ~~LN~~f~~-~ 174 (333)
T 1ll2_A 129 --PDCFNSGVFVYQPSV----ETYNQLLHVASEQG---SFDGGDQGLLNTFFNS-W 174 (333)
T ss_dssp --TTSEEEEEEEECCCH----HHHHHHHHHHHHTC---CTTSSHHHHHHHHTTT-T
T ss_pred --CcceeeeEEEEeCCH----HHHHHHHHHHHhcC---CCCCCCHHHHHHHHHh-h
Confidence 258999999998752 44567777777653 3467999999999985 5
No 4
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A
Probab=99.62 E-value=1.9e-15 Score=148.84 Aligned_cols=93 Identities=11% Similarity=0.041 Sum_probs=77.6
Q ss_pred hhhhHHhhhccccCCCCcEEEEecceeeecChHHHHhcCCCCCeEEEEeccCCCCCCCCccccccccccCccccccCCCC
Q 012380 329 LMNHLRIYIPELFPDLNKILFLDDDVVVQHDLSSLLELDLNGKVVGAVVGSSCGDNCCPGRKYKDYLNFSYPIISSNFDH 408 (465)
Q Consensus 329 ~~~y~Rf~LPeifP~ldKVLYLD~DVVVq~DLseLw~iDL~gkvigAVeDc~~~~~~~~~~r~~~yLnfs~p~i~~~f~~ 408 (465)
..+|.|++++++. +++||||||+|++|++||.+||++| .+|||.|.+.
T Consensus 82 ~~~~~kl~~~~l~-~~~~vlylD~D~~v~~~~~~Lf~~~----~~aA~~d~~~--------------------------- 129 (263)
T 3u2u_A 82 GVTLTKLHCWSLT-QYSKCVFMDADTLVLANIDDLFDRE----ELSAAPDPGW--------------------------- 129 (263)
T ss_dssp GGGGGGGGGGGCT-TCSEEEEECTTEEECSCCGGGGGSC----SSEEEECTTS---------------------------
T ss_pred hHHhHHHHhcccc-CcceEEEEcCCEeeccCHHHHhCCC----cceEeccCCC---------------------------
Confidence 4689999999987 4999999999999999999999998 4788887421
Q ss_pred CCCccccceeeEehHHHHHhcHHHHHHHHHHhhcccccccccchhHHHHHhcC
Q 012380 409 DHCAWLYGMNVLDLEAWRRTNITATYHKWLKLEHFHQLCLLWMVTCILLILHG 461 (465)
Q Consensus 409 ~~cyFNSGVlLiDL~~WRk~nite~~~~~l~~n~~~~l~~~~d~~~l~l~F~~ 461 (465)
.+||||||||||++ .++.++++++++++.. +..+||.++|.+|.+
T Consensus 130 -~~~fNsGv~li~p~----~~~~~~l~~~~~~~~~---~~~~DQd~LN~~f~~ 174 (263)
T 3u2u_A 130 -PDCFNSGVFVYQPS----VETYNQLLHLASEQGS---FDGGDQGILNTFFSS 174 (263)
T ss_dssp -TTSEEEEEEEECCC----HHHHHHHHHHHHHHCC---TTSSHHHHHHHHTTT
T ss_pred -CccccCeEEEEccc----HHHHHHHHHHHHhcCC---CCcccHHHHHHHhcc
Confidence 14899999999986 4677888888876542 357999999999987
No 5
>3pmr_A Amyloid-like protein 1; heparin binding, cell adhesion; 2.11A {Homo sapiens} SCOP: a.47.4.0 PDB: 3q7l_A 3q7g_A 3qmk_A*
Probab=35.20 E-value=56 Score=30.98 Aligned_cols=28 Identities=25% Similarity=0.283 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 012380 135 IKAFAFKTKAMLLKMEHEVQSSRQRESI 162 (465)
Q Consensus 135 ~~~~~~kl~~~~~~~ee~~~~~~~~~~~ 162 (465)
-.++.....+++.++|++..+.|+|-.-
T Consensus 67 kk~m~~rFQ~~v~aLE~E~~~ErqqL~e 94 (219)
T 3pmr_A 67 RQALNEHFQSILQTLEEQVSGERQRLVE 94 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3678899999999999999988776543
No 6
>3umh_A Amyloid beta A4 protein; metal binding site, metal binding, cell surface, secretory P metal binding protein; 2.00A {Homo sapiens} SCOP: a.47.4.1 PDB: 3umi_A 3umk_A 1rw6_A 3nyl_A 3nyj_A 1tkn_A
Probab=29.84 E-value=61 Score=30.57 Aligned_cols=29 Identities=24% Similarity=0.198 Sum_probs=24.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 012380 134 DIKAFAFKTKAMLLKMEHEVQSSRQRESI 162 (465)
Q Consensus 134 d~~~~~~kl~~~~~~~ee~~~~~~~~~~~ 162 (465)
|-+++.+...+++.++|++..+.|+|-.-
T Consensus 59 dkk~~~~rFQ~~v~aLE~E~~~ErqqL~e 87 (211)
T 3umh_A 59 DKKAVIQHFQEKVESLEQEAANERQQLVE 87 (211)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 35689999999999999999988777543
No 7
>2lse_A Four helix bundle protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=34.11 E-value=12 Score=29.88 Aligned_cols=53 Identities=30% Similarity=0.383 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCccccccccHHHHHHHHhc--ccCCHHHHHHHHHHHHHHH
Q 012380 91 KLREELTRALIEAKDGSGNGGGRIQGTLDSFNELVKEVTS--KRQDIKAFAFKTKAMLLKM 149 (465)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~~~~~kl~~~~~~~ 149 (465)
++.+.+.++|.|.+++ .|+.+++ -++.+-...++ ..-|+++|+.|.|+-+..|
T Consensus 7 klleklekildevtdg-apdeare-----rieklakdvkdeleegdaknmiekfrdemeqm 61 (101)
T 2lse_A 7 KLLEKLEKILDEVTDG-APDEARE-----RIEKLAKDVKDELEEGDAKNMIEKFRDEMEQM 61 (101)
Confidence 5778888888888876 2333332 22233333333 2368888988888765544
No 8
>1p68_A De novo designed protein S-824; four helix bundle, de novo protein; NMR {Escherichia coli} SCOP: k.8.1.1 PDB: 2jua_A
Probab=23.15 E-value=41 Score=26.92 Aligned_cols=22 Identities=14% Similarity=0.214 Sum_probs=16.8
Q ss_pred cCCCchhHHHHHHHHHHHHhhc
Q 012380 84 SGSDTSLKLREELTRALIEAKD 105 (465)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~ 105 (465)
|++...+++|+|+++.|.|++.
T Consensus 52 gsggklqemmkefqqvldelnn 73 (102)
T 1p68_A 52 GSGGKLQEMMKEFQQVLDELNN 73 (102)
T ss_dssp STTTHHHHTHHHHHHHHHHHHT
T ss_pred CcchHHHHHHHHHHHHHHHHHH
Confidence 3344556899999999999875
No 9
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=16.71 E-value=1.2e+02 Score=31.15 Aligned_cols=20 Identities=10% Similarity=0.110 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 012380 135 IKAFAFKTKAMLLKMEHEVQ 154 (465)
Q Consensus 135 ~~~~~~kl~~~~~~~ee~~~ 154 (465)
+..+..-|+..+.-+.+.++
T Consensus 111 ~~e~s~eLe~~i~~lk~~V~ 130 (390)
T 1deq_A 111 FKQINEDLRSRIEILRRKVI 130 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444433
No 10
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=13.72 E-value=1.1e+02 Score=20.89 Aligned_cols=20 Identities=45% Similarity=0.536 Sum_probs=14.6
Q ss_pred cccchHHHHHHHHHhhhHHH
Q 012380 38 SSRTLLPVVLVLGIVLPFLF 57 (465)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~ 57 (465)
-.||-++-+|++-|++.++|
T Consensus 12 LNRTSLy~GLLlifvlavlF 31 (37)
T 3arc_L 12 LNRTSLYLGLLLILVLALLF 31 (37)
T ss_dssp CCHHHHHHHHHHHHHHHHHH
T ss_pred echhhHHHHHHHHHHHHHHh
Confidence 57877777777777776665
Done!