BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 012382
         (465 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2WIV|A Chain A, Cytochrome-P450 Xpla Heme Domain P21
 pdb|2WIV|B Chain B, Cytochrome-P450 Xpla Heme Domain P21
 pdb|2WIY|A Chain A, Cytochrome P450 Xpla Heme Domain P21212
          Length = 394

 Score = 31.6 bits (70), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 13/59 (22%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 230 SLKKNPYDHQINNHENQTLYTAHQILESWIFTTQQLLKRIVSRIESKQFEEASNDCYLL 288
           +L  +P  H +   +    +T  ++++ W+ TT++L+  ++  +E+ Q  EA  D  ++
Sbjct: 79  ALGSDPPHHTVLRRQTNKWFTP-KLVDGWVRTTRELVGDLLDGVEAGQVIEARRDLAVV 136


>pdb|4EP6|A Chain A, Crystal Structure Of The Xpla Heme Domain In Complex With
           Imidazole And Peg
          Length = 392

 Score = 31.2 bits (69), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 13/59 (22%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 230 SLKKNPYDHQINNHENQTLYTAHQILESWIFTTQQLLKRIVSRIESKQFEEASNDCYLL 288
           +L  +P  H +   +    +T  ++++ W+ TT++L+  ++  +E+ Q  EA  D  ++
Sbjct: 77  ALGSDPPHHTVLRRQTNKWFTP-KLVDGWVRTTRELVGDLLDGVEAGQVIEARRDLAVV 134


>pdb|1TAF|A Chain A, Drosophila Tbp Associated Factors Dtafii42DTAFII62
           HETEROTETRAMER
          Length = 68

 Score = 29.3 bits (64), Expect = 4.6,   Method: Composition-based stats.
 Identities = 12/22 (54%), Positives = 16/22 (72%)

Query: 79  QALEITFRFVSIVLSDPRPYAN 100
           Q LE TFR+V+ +L D + YAN
Sbjct: 26  QLLEFTFRYVTSILDDAKVYAN 47


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.133    0.396 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,942,125
Number of Sequences: 62578
Number of extensions: 494068
Number of successful extensions: 1078
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1076
Number of HSP's gapped (non-prelim): 4
length of query: 465
length of database: 14,973,337
effective HSP length: 102
effective length of query: 363
effective length of database: 8,590,381
effective search space: 3118308303
effective search space used: 3118308303
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)