BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012382
(465 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O04203|HSPR2_ARATH Nematode resistance protein-like HSPRO2 OS=Arabidopsis thaliana
GN=HSPRO2 PE=1 SV=1
Length = 435
Score = 548 bits (1413), Expect = e-155, Method: Compositional matrix adjust.
Identities = 278/465 (59%), Positives = 340/465 (73%), Gaps = 38/465 (8%)
Query: 1 MVDLDCKTKMPS----KSPKLSNKLQVSIPTPFRGA-TKSPVACSDAA-CSAYEQYLRLP 54
MVD+D K KM S SPKLS+KL V+IP+PF+ SP++CS A CSAYE YLRLP
Sbjct: 1 MVDMDWKRKMVSSDLPNSPKLSSKLHVTIPSPFKIVPVSSPISCSAPALCSAYELYLRLP 60
Query: 55 ELRKLWSSRDFPNWENEAVLKPALQALEITFRFVSIVLSDPRPYANRREFKRRLESLATS 114
ELRKLWSSRDFP W +E +LKPALQALEI+FR V V SD RPY N RE+ RRL+SL T
Sbjct: 61 ELRKLWSSRDFPQWTSEPILKPALQALEISFRLVFAVCSDTRPYINHREWNRRLDSLITK 120
Query: 115 QIQLIASLCEDDDRSGTAPIVDLTTENGFLARNRSSAEVWKVPGGESTLVNRTSEYSLLP 174
QIQL+A++CED++ G SAE V GG S+L SLLP
Sbjct: 121 QIQLVAAICEDEEEEGI------------------SAEA-PVGGGRSSL-------SLLP 154
Query: 175 RLATWQKSEDAADKIMYIIECEMRGCRYTLGLGEPNLAGKPNLEYDAVCKPHELHSLKKN 234
+LATW++SE KI+Y I+ EM C+YTLGLGE N+AGKPNL YDA+C+P+E++SLK N
Sbjct: 155 QLATWRRSEALGKKILYTIDNEMSRCKYTLGLGEQNIAGKPNLRYDAICRPNEIYSLKDN 214
Query: 235 PYDHQINNHENQTLYTAHQILESWIFTTQQLLKRIVSRIESKQFEEASNDCYLLERIWKL 294
PY I+NHENQTLY HQILESWI+ + LL RIVS IE ++F +ASND YLLE+IWK+
Sbjct: 215 PYADHIDNHENQTLYIIHQILESWIYASGNLLNRIVSSIEEEKFGKASNDVYLLEKIWKI 274
Query: 295 LSEIEDLHLLMDPDDFLRLKNQLSISSSSESGPFCFRSRGLFEITKQSKELKHNVPLILG 354
L+EIEDLH+LMDP+DFL+LK QL I S+ ++ FCFRS+GL E+ K SK+L+ VP +L
Sbjct: 275 LAEIEDLHMLMDPEDFLKLKKQLQIKSTGKNDAFCFRSKGLVEMMKMSKDLRQKVPAVLA 334
Query: 355 VEVDPRGGPRVQEAAMRMYNEKKERDFAKIHLVQALQAVEAALKRFFYAYKQLLAVVMGS 414
VEVDP GGPR+QEAAM++Y K E D KIHL+Q +QAVEAA K FF+ Y+QL+A +MGS
Sbjct: 335 VEVDPTGGPRLQEAAMKLYARKTECD--KIHLLQGMQAVEAAAKSFFFGYRQLVAAMMGS 392
Query: 415 LEAKANGVVVVSGASSDSLSQLFLEPTYYPSLDAAKTFLGEFWSH 459
E A S S DSLSQ+F+EPTY+PSLDAAKTFLGEFWSH
Sbjct: 393 AEMNATA----SQESCDSLSQIFMEPTYFPSLDAAKTFLGEFWSH 433
>sp|Q9LY61|HSPR1_ARATH Nematode resistance protein-like HSPRO1 OS=Arabidopsis thaliana
GN=HSPRO1 PE=1 SV=1
Length = 428
Score = 488 bits (1257), Expect = e-137, Method: Compositional matrix adjust.
Identities = 264/461 (57%), Positives = 322/461 (69%), Gaps = 36/461 (7%)
Query: 1 MVDLDCKTKMPSKSPKLSNKLQVSIPTPFR--GATKSPVACSDAACSAYEQYLRLPELRK 58
M DLD + KM +S KL V+IP P + + + S AACSAYE YLRLPELR
Sbjct: 1 MADLDLQRKM------VSPKLHVTIPEPCKLSSVSSPISSSSSAACSAYELYLRLPELRN 54
Query: 59 LWSSRDFPNWENEAVLKPALQALEITFRFVSIVLSDPRPYANRREFKRRLESLATSQIQL 118
LWSS FP+W +E VLKPALQALEITFR + V SD RPY NRRE+ RRL+SL TSQI++
Sbjct: 55 LWSSLYFPHWISEPVLKPALQALEITFRLILTVASDTRPYINRREWIRRLDSLTTSQIKI 114
Query: 119 IASLCEDDDRSGTAPIVDLTTENGFLARNRSSAEVWKVPGGESTLVNRTSEYSLLPRLAT 178
+A++C D+D N S+A V N S SLL +AT
Sbjct: 115 VAAICGDEDN---------------YEENVSAAPV----------SNGWSSLSLLSEIAT 149
Query: 179 WQKSEDAADKIMYIIECEMRGCRYTLGLGEPNLAGKPNLEYDAVCKPHELHSLKKNPYDH 238
+ SE KI+ IE EMR C+YTLGLGEPNLAGKP L+YDAVC P ELHSLK NPY
Sbjct: 150 CRTSESVGQKILSTIENEMRWCKYTLGLGEPNLAGKPYLQYDAVCLPEELHSLKNNPYAD 209
Query: 239 QINNHENQTLYTAHQILESWIFTTQQLLKRIVSRIESKQFEEASNDCYLLERIWKLLSEI 298
I N ENQ LYT+HQILESWI+ + LL RI SRIE +FE+AS+D YLLERIWKLLSEI
Sbjct: 210 HIENQENQMLYTSHQILESWIYVSVNLLYRIESRIEEGKFEKASSDVYLLERIWKLLSEI 269
Query: 299 EDLHLLMDPDDFLRLKNQLSISSSSESGPFCFRSRGLFEITKQSKELKHNVPLILGVEVD 358
EDLH+LMDP+DFL++K QL I S+ + FCFRS+GL E+ K SKEL+ VP +L VEVD
Sbjct: 270 EDLHILMDPEDFLKVKKQLQIKSTFPNDAFCFRSKGLVEMAKMSKELRQKVPAVLEVEVD 329
Query: 359 PRGGPRVQEAAMRMYNEKKERDFAKIHLVQALQAVEAALKRFFYAYKQLLAVVMGSLEAK 418
P GGPR+QEAAM++Y+ K E + KIHL+Q +QAVE+A KRFF+ Y++L+A ++G+ EA
Sbjct: 330 PTGGPRLQEAAMKLYSRKTE--YEKIHLLQGMQAVESAAKRFFFGYQKLVAAMIGNAEAN 387
Query: 419 ANGVVVVSGASSDSLSQLFLEPTYYPSLDAAKTFLGEFWSH 459
AN V + S DSL+Q+F+EP YYPSLDAAKTFLGEFWS
Sbjct: 388 ANR-TVANHESYDSLTQVFMEPPYYPSLDAAKTFLGEFWSQ 427
>sp|Q7Z333|SETX_HUMAN Probable helicase senataxin OS=Homo sapiens GN=SETX PE=1 SV=4
Length = 2677
Score = 35.4 bits (80), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 48/103 (46%), Gaps = 11/103 (10%)
Query: 261 TTQQLLKRIVSRIESKQFEEASND-CYLLERI---WKLLSEIEDLHLLMDPDDFLRLKNQ 316
+T LKR S S +F+ A D CY LE + K E+ LH ++ + LRL N
Sbjct: 13 STIDFLKRYASNTPSGEFQTADEDLCYCLECVAEYHKARDELPFLHEVLWELETLRLINH 72
Query: 317 LSISSSSESGP----FCFRSRG---LFEITKQSKELKHNVPLI 352
S +E G + + G LF+IT Q E K VPL+
Sbjct: 73 FEKSMKAEIGDDDELYIVDNNGEMPLFDITGQDFENKLRVPLL 115
>sp|P0C2I6|YL13B_YEAST Transposon Ty1-LR3 Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY1B-LR3 PE=1 SV=1
Length = 1755
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 23 VSIPTPFRGATKSPVACSDAACSAYEQYLRLPELRKLWSSRDFPNW 68
+S P+P G T + + +D+ ++ ++Y+R P + L S DFPNW
Sbjct: 141 LSTPSPESGNTFTDSSSADSDMTSTKKYVRPPPM--LTSPNDFPNW 184
>sp|Q12141|YG11B_YEAST Transposon Ty1-GR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY1B-GR1 PE=3 SV=1
Length = 1755
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 23 VSIPTPFRGATKSPVACSDAACSAYEQYLRLPELRKLWSSRDFPNW 68
+S P+P G T + + +D+ ++ ++Y+R P + L S DFPNW
Sbjct: 141 LSTPSPESGNTFTDSSSADSDMTSTKKYVRPPPM--LTSPNDFPNW 184
>sp|Q99231|YD12B_YEAST Transposon Ty1-DR3 Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY1B-DR3 PE=1 SV=2
Length = 1755
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 23 VSIPTPFRGATKSPVACSDAACSAYEQYLRLPELRKLWSSRDFPNW 68
+S P+P G T + + +D+ ++ ++Y+R P + L S DFPNW
Sbjct: 141 LSTPSPESGNTFTDSSSADSDMTSTKKYVRPPPM--LTSPNDFPNW 184
>sp|Q12269|YG12B_YEAST Transposon Ty1-GR2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY1B-GR2 PE=3 SV=3
Length = 1755
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 23 VSIPTPFRGATKSPVACSDAACSAYEQYLRLPELRKLWSSRDFPNW 68
+S P+P G T + + +D+ ++ ++Y+R P + L S DFPNW
Sbjct: 141 LSTPSPESGNTFTDSSSADSDMTSTKKYVRPPPM--LTSPNDFPNW 184
>sp|P0C2I2|YD14B_YEAST Transposon Ty1-DR5 Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY1B-DR5 PE=1 SV=1
Length = 1755
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 23 VSIPTPFRGATKSPVACSDAACSAYEQYLRLPELRKLWSSRDFPNW 68
+S P+P G T + + +D+ ++ ++Y+R P + L S DFPNW
Sbjct: 141 LSTPSPESGNTFTDSSSADSDMTSTKKYVRPPPM--LTSPNDFPNW 184
>sp|P0C2I9|YP12B_YEAST Transposon Ty1-PR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY1B-PR1 PE=2 SV=1
Length = 1755
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 23 VSIPTPFRGATKSPVACSDAACSAYEQYLRLPELRKLWSSRDFPNW 68
+S P+P G T + + +D+ ++ ++Y+R P + L S DFPNW
Sbjct: 141 LSTPSPESGNTFTDSSSADSDMTSTKKYVRPPPM--LTSPNDFPNW 184
>sp|Q04670|YM14B_YEAST Transposon Ty1-MR2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY1B-MR2 PE=1 SV=2
Length = 1755
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 23 VSIPTPFRGATKSPVACSDAACSAYEQYLRLPELRKLWSSRDFPNW 68
+S P+P G T + + +D+ ++ ++Y+R P + L S DFPNW
Sbjct: 141 LSTPSPESGNTFTDSSSADSDMTSTKKYVRPPPM--LTSPNDFPNW 184
>sp|Q03434|YM12B_YEAST Transposon Ty1-ML2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY1B-ML2 PE=3 SV=2
Length = 1755
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 23 VSIPTPFRGATKSPVACSDAACSAYEQYLRLPELRKLWSSRDFPNW 68
+S P+P G T + + +D+ ++ ++Y+R P + L S DFPNW
Sbjct: 141 LSTPSPESGNTFTDSSSADSDMTSTKKYVRPPPM--LTSPNDFPNW 184
>sp|P0C2I7|YL14B_YEAST Transposon Ty1-LR4 Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY1B-LR4 PE=5 SV=1
Length = 1755
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 23 VSIPTPFRGATKSPVACSDAACSAYEQYLRLPELRKLWSSRDFPNW 68
+S P+P G T + + +D+ ++ ++Y+R P + L S DFPNW
Sbjct: 141 LSTPSPESGNTFTDSSSADSDMTSTKKYVRPPPM--LTSPNDFPNW 184
>sp|Q12414|YP11B_YEAST Transposon Ty1-PL Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY1B-PL PE=3 SV=1
Length = 1755
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 23 VSIPTPFRGATKSPVACSDAACSAYEQYLRLPELRKLWSSRDFPNW 68
+S P+P G T + + +D+ ++ ++Y+R P + L S DFPNW
Sbjct: 141 LSTPSPESGNTFTDSSSADSDMTSTKKYVRPPPM--LTSPNDFPNW 184
>sp|Q12273|YO11B_YEAST Transposon Ty1-OL Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY1B-OL PE=2 SV=1
Length = 1755
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 23 VSIPTPFRGATKSPVACSDAACSAYEQYLRLPELRKLWSSRDFPNW 68
+S P+P G T + + +D+ ++ ++Y+R P + L S DFPNW
Sbjct: 141 LSTPSPESGNTFTDSSSADSDMTSTKKYVRPPPM--LTSPNDFPNW 184
>sp|Q04711|YM11B_YEAST Transposon Ty1-ML1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY1B-ML1 PE=2 SV=2
Length = 1755
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 23 VSIPTPFRGATKSPVACSDAACSAYEQYLRLPELRKLWSSRDFPNW 68
+S P+P G T + + +D+ ++ ++Y+R P + L S DFPNW
Sbjct: 141 LSTPSPESGNTFTDSSSADSDMTSTKKYVRPPPM--LTSPNDFPNW 184
>sp|Q12088|YL11B_YEAST Transposon Ty1-LR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY1B-LR1 PE=1 SV=1
Length = 1755
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 23 VSIPTPFRGATKSPVACSDAACSAYEQYLRLPELRKLWSSRDFPNW 68
+S P+P G T + + +D+ ++ ++Y+R P + L S DFPNW
Sbjct: 141 LSTPSPESGNTFTDSSSADSDMTSTKKYVRPPPM--LTSPNDFPNW 184
>sp|P0C2I3|YD15B_YEAST Transposon Ty1-DR6 Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY1B-DR6 PE=2 SV=1
Length = 1755
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 23 VSIPTPFRGATKSPVACSDAACSAYEQYLRLPELRKLWSSRDFPNW 68
+S P+P G T + + +D+ ++ ++Y+R P + L S DFPNW
Sbjct: 141 LSTPSPESGNTFTDSSSADSDMTSTKKYVRPPPM--LTSPNDFPNW 184
>sp|Q07793|YD13B_YEAST Transposon Ty1-DR4 Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY1B-DR4 PE=3 SV=2
Length = 1604
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 23 VSIPTPFRGATKSPVACSDAACSAYEQYLRLPELRKLWSSRDFPNW 68
+S P+P G T + + +D+ ++ ++Y+R P + L S DFPNW
Sbjct: 141 LSTPSPESGNTFTDSSSADSDMTSTKKYVRPPPM--LTSPNDFPNW 184
>sp|Q03855|YD11B_YEAST Transposon Ty1-DR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY1B-DR1 PE=1 SV=2
Length = 1755
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 23 VSIPTPFRGATKSPVACSDAACSAYEQYLRLPELRKLWSSRDFPNW 68
+S P+P G T + + +D+ ++ ++Y+R P + L S DFPNW
Sbjct: 141 LSTPSPESGNTFTDSSSADSDMTSTKKYVRPPPM--LTSPNDFPNW 184
>sp|Q07163|TY1AB_YEASX Transposon TyH3 Gag-Pol polyprotein OS=Saccharomyces cerevisiae
GN=TY1B PE=1 SV=2
Length = 1755
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 23 VSIPTPFRGATKSPVACSDAACSAYEQYLRLPELRKLWSSRDFPNW 68
+S P+P G T + + +D+ ++ ++Y+R P + L S DFPNW
Sbjct: 141 LSTPSPESGNTFTDSSSADSDMTSTKKYVRPPPM--LTSPNDFPNW 184
>sp|P0C2J0|YP13B_YEAST Transposon Ty1-PR2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY1B-PR2 PE=1 SV=1
Length = 1756
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 23 VSIPTPFRGATKSPVACSDAACSAYEQYLRLPELRKLWSSRDFPNW 68
+S P+P G T + + +D+ ++ ++Y+R P + L S DFPNW
Sbjct: 141 LSTPSPESGNTFTDSSSADSDMTSTKKYVRPPPM--LTSPNDFPNW 184
>sp|Q12316|YG13B_YEAST Transposon Ty1-GR3 Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY1B-GR3 PE=1 SV=3
Length = 1755
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 23 VSIPTPFRGATKSPVACSDAACSAYEQYLRLPELRKLWSSRDFPNW 68
+S P+P G T + + +D+ ++ ++Y+R P + L S DFPNW
Sbjct: 141 LSTPSPESGNTFTDSSSADSDMTSTKKYVRPPPM--LTSPNDFPNW 184
>sp|Q03612|YE11B_YEAST Transposon Ty1-ER1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY1B-ER1 PE=1 SV=1
Length = 1755
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 23 VSIPTPFRGATKSPVACSDAACSAYEQYLRLPELRKLWSSRDFPNW 68
+S P+P G T + + +D+ ++ ++Y+R P + L S DFPNW
Sbjct: 141 LSTPSPESGNTFTDSSSADSDMTSTKKYVRPPPM--LTSPNDFPNW 184
>sp|Q92393|YO12B_YEAST Transposon Ty1-OR Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY1B-OR PE=1 SV=1
Length = 1755
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 23 VSIPTPFRGATKSPVACSDAACSAYEQYLRLPELRKLWSSRDFPNW 68
+S P+P G T + + +D+ ++ ++Y+R P + L S DFPNW
Sbjct: 141 LSTPSPESGNTFTDSSSADSDMTSTKKYVRPPPM--LTSPNDFPNW 184
>sp|P47100|YJ12B_YEAST Transposon Ty1-JR2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY1B-JR2 PE=1 SV=3
Length = 1755
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 23 VSIPTPFRGATKSPVACSDAACSAYEQYLRLPELRKLWSSRDFPNW 68
+S P+P G T + + +D+ ++ ++Y+R P + L S DFPNW
Sbjct: 141 LSTPSPESGNTFTDSSSADSDMTSTKKYVRPPPM--LTSPNDFPNW 184
>sp|P47098|YJ11B_YEAST Transposon Ty1-JR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY1B-JR1 PE=1 SV=3
Length = 1755
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 23 VSIPTPFRGATKSPVACSDAACSAYEQYLRLPELRKLWSSRDFPNW 68
+S P+P G T + + +D+ ++ ++Y+R P + L S DFPNW
Sbjct: 141 LSTPSPESGNTFTDSSSADSDMTSTKKYVRPPPM--LTSPNDFPNW 184
>sp|Q03619|YE12B_YEAST Transposon Ty1-ER2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY1B-ER2 PE=1 SV=1
Length = 1755
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 23 VSIPTPFRGATKSPVACSDAACSAYEQYLRLPELRKLWSSRDFPNW 68
+S P+P G T + + +D+ ++ ++Y+R P + L S DFPNW
Sbjct: 141 LSTPSPESGNTFTDSSSADSDMTSTKKYVRPPPM--LTSPNDFPNW 184
>sp|P0C2J1|YP14B_YEAST Transposon Ty1-PR3 Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY1B-PR3 PE=3 SV=1
Length = 1755
Score = 35.0 bits (79), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 23 VSIPTPFRGATKSPVACSDAACSAYEQYLRLPELRKLWSSRDFPNW 68
+S P+P G T + + +D+ ++ ++Y+R P + L S DFPNW
Sbjct: 141 LSTPSPESGNTFTDSSSADSDMTSTKKYVRPPPM--LTSPNDFPNW 184
>sp|O13535|YH11B_YEAST Transposon Ty1-H Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY1B-H PE=1 SV=1
Length = 1793
Score = 35.0 bits (79), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 23 VSIPTPFRGATKSPVACSDAACSAYEQYLRLPELRKLWSSRDFPNW 68
+S P+P G T + + +D+ ++ ++Y+R P + L S DFPNW
Sbjct: 141 LSTPSPESGNTFTDSSSADSDMTSTKKYVRPPPM--LTSPNDFPNW 184
>sp|P0C2I5|YL12B_YEAST Transposon Ty1-LR2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY1B-LR2 PE=3 SV=1
Length = 1755
Score = 35.0 bits (79), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 23 VSIPTPFRGATKSPVACSDAACSAYEQYLRLPELRKLWSSRDFPNW 68
+S P+P G T + + +D+ ++ ++Y+R P + L S DFPNW
Sbjct: 141 LSTPSPESGNTFTDSSSADSDMTSTKKYVRPPPM--LTSPNDFPNW 184
>sp|Q12193|YB12B_YEAST Transposon Ty1-BR Gag-Pol polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY1B-BR PE=1 SV=1
Length = 1756
Score = 35.0 bits (79), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 23 VSIPTPFRGATKSPVACSDAACSAYEQYLRLPELRKLWSSRDFPNW 68
+S P+P G T + + +D+ ++ ++Y+R P + L S DFPNW
Sbjct: 141 LSTPSPESGNTFTDSSSADSDMTSTKKYVRPPPM--LTSPNDFPNW 184
>sp|Q12085|YG11A_YEAST Transposon Ty1-GR1 Gag polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY1A-GR1 PE=2 SV=1
Length = 440
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 23 VSIPTPFRGATKSPVACSDAACSAYEQYLRLPELRKLWSSRDFPNW 68
+S P+P G T + + +D+ ++ ++Y+R P + L S DFPNW
Sbjct: 141 LSTPSPESGNTFTDSSSADSDMTSTKKYVRPPPM--LTSPNDFPNW 184
>sp|Q12485|YG12A_YEAST Transposon Ty1-GR2 Gag polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY1A-GR2 PE=2 SV=1
Length = 440
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 23 VSIPTPFRGATKSPVACSDAACSAYEQYLRLPELRKLWSSRDFPNW 68
+S P+P G T + + +D+ ++ ++Y+R P + L S DFPNW
Sbjct: 141 LSTPSPESGNTFTDSSSADSDMTSTKKYVRPPPM--LTSPNDFPNW 184
>sp|P47099|YJ12A_YEAST Transposon Ty1-JR2 Gag polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY1A-JR2 PE=2 SV=1
Length = 440
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 23 VSIPTPFRGATKSPVACSDAACSAYEQYLRLPELRKLWSSRDFPNW 68
+S P+P G T + + +D+ ++ ++Y+R P + L S DFPNW
Sbjct: 141 LSTPSPESGNTFTDSSSADSDMTSTKKYVRPPPM--LTSPNDFPNW 184
>sp|P0CX58|YP12A_YEAST Transposon Ty1-PR1 Gag polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY1A-PR1 PE=1 SV=1
Length = 440
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 23 VSIPTPFRGATKSPVACSDAACSAYEQYLRLPELRKLWSSRDFPNW 68
+S P+P G T + + +D+ ++ ++Y+R P + L S DFPNW
Sbjct: 141 LSTPSPESGNTFTDSSSADSDMTSTKKYVRPPPM--LTSPNDFPNW 184
>sp|P0CX57|YA11A_YEAST Transposon Ty1-A Gag polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY1A-A PE=1 SV=1
Length = 440
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 23 VSIPTPFRGATKSPVACSDAACSAYEQYLRLPELRKLWSSRDFPNW 68
+S P+P G T + + +D+ ++ ++Y+R P + L S DFPNW
Sbjct: 141 LSTPSPESGNTFTDSSSADSDMTSTKKYVRPPPM--LTSPNDFPNW 184
>sp|Q04706|YM11A_YEAST Transposon Ty1-ML1 Gag polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY1A-ML1 PE=2 SV=1
Length = 440
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 23 VSIPTPFRGATKSPVACSDAACSAYEQYLRLPELRKLWSSRDFPNW 68
+S P+P G T + + +D+ ++ ++Y+R P + L S DFPNW
Sbjct: 141 LSTPSPESGNTFTDSSSADSDMTSTKKYVRPPPM--LTSPNDFPNW 184
>sp|P08405|TY1A_YEASX Transposon TyH3 Gag polyprotein OS=Saccharomyces cerevisiae GN=TY1A
PE=1 SV=2
Length = 440
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 23 VSIPTPFRGATKSPVACSDAACSAYEQYLRLPELRKLWSSRDFPNW 68
+S P+P G T + + +D+ ++ ++Y+R P + L S DFPNW
Sbjct: 141 LSTPSPESGNTFTDSSSADSDMTSTKKYVRPPPM--LTSPNDFPNW 184
>sp|Q12441|YD12A_YEAST Transposon Ty1-DR3 Gag polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY1A-DR3 PE=1 SV=1
Length = 440
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 23 VSIPTPFRGATKSPVACSDAACSAYEQYLRLPELRKLWSSRDFPNW 68
+S P+P G T + + +D+ ++ ++Y+R P + L S DFPNW
Sbjct: 141 LSTPSPESGNTFTDSSSADSDMTSTKKYVRPPPM--LTSPNDFPNW 184
>sp|P0CX69|YM14A_YEAST Transposon Ty1-MR2 Gag polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY1A-MR2 PE=1 SV=1
Length = 440
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 23 VSIPTPFRGATKSPVACSDAACSAYEQYLRLPELRKLWSSRDFPNW 68
+S P+P G T + + +D+ ++ ++Y+R P + L S DFPNW
Sbjct: 141 LSTPSPESGNTFTDSSSADSDMTSTKKYVRPPPM--LTSPNDFPNW 184
>sp|P0CX68|YL11A_YEAST Transposon Ty1-LR1 Gag polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY1A-LR1 PE=1 SV=1
Length = 440
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 23 VSIPTPFRGATKSPVACSDAACSAYEQYLRLPELRKLWSSRDFPNW 68
+S P+P G T + + +D+ ++ ++Y+R P + L S DFPNW
Sbjct: 141 LSTPSPESGNTFTDSSSADSDMTSTKKYVRPPPM--LTSPNDFPNW 184
>sp|P0CX67|YG13A_YEAST Transposon Ty1-GR3 Gag polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY1A-GR3 PE=1 SV=1
Length = 440
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 23 VSIPTPFRGATKSPVACSDAACSAYEQYLRLPELRKLWSSRDFPNW 68
+S P+P G T + + +D+ ++ ++Y+R P + L S DFPNW
Sbjct: 141 LSTPSPESGNTFTDSSSADSDMTSTKKYVRPPPM--LTSPNDFPNW 184
>sp|P0CX66|YE12A_YEAST Transposon Ty1-ER2 Gag polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY1A-ER2 PE=1 SV=1
Length = 440
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 23 VSIPTPFRGATKSPVACSDAACSAYEQYLRLPELRKLWSSRDFPNW 68
+S P+P G T + + +D+ ++ ++Y+R P + L S DFPNW
Sbjct: 141 LSTPSPESGNTFTDSSSADSDMTSTKKYVRPPPM--LTSPNDFPNW 184
>sp|P0CX65|YD14A_YEAST Transposon Ty1-DR5 Gag polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY1A-DR5 PE=1 SV=1
Length = 440
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 23 VSIPTPFRGATKSPVACSDAACSAYEQYLRLPELRKLWSSRDFPNW 68
+S P+P G T + + +D+ ++ ++Y+R P + L S DFPNW
Sbjct: 141 LSTPSPESGNTFTDSSSADSDMTSTKKYVRPPPM--LTSPNDFPNW 184
>sp|P0CX76|YM12A_YEAST Transposon Ty1-ML2 Gag polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY1A-ML2 PE=1 SV=1
Length = 440
Score = 34.7 bits (78), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 23 VSIPTPFRGATKSPVACSDAACSAYEQYLRLPELRKLWSSRDFPNW 68
+S P+P G T + + +D+ ++ ++Y+R P + L S DFPNW
Sbjct: 141 LSTPSPESGNTFTDSSSADSDMTSTKKYVRPPPM--LTSPNDFPNW 184
>sp|P0CX75|YL13A_YEAST Transposon Ty1-LR3 Gag polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY1A-LR3 PE=1 SV=1
Length = 440
Score = 34.7 bits (78), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 23 VSIPTPFRGATKSPVACSDAACSAYEQYLRLPELRKLWSSRDFPNW 68
+S P+P G T + + +D+ ++ ++Y+R P + L S DFPNW
Sbjct: 141 LSTPSPESGNTFTDSSSADSDMTSTKKYVRPPPM--LTSPNDFPNW 184
>sp|P0CX74|YJ11A_YEAST Transposon Ty1-JR1 Gag polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY1A-JR1 PE=1 SV=1
Length = 440
Score = 34.7 bits (78), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 23 VSIPTPFRGATKSPVACSDAACSAYEQYLRLPELRKLWSSRDFPNW 68
+S P+P G T + + +D+ ++ ++Y+R P + L S DFPNW
Sbjct: 141 LSTPSPESGNTFTDSSSADSDMTSTKKYVRPPPM--LTSPNDFPNW 184
>sp|P0CX73|YP11A_YEAST Transposon Ty1-PL Gag polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY1A-PL PE=2 SV=1
Length = 440
Score = 34.7 bits (78), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 23 VSIPTPFRGATKSPVACSDAACSAYEQYLRLPELRKLWSSRDFPNW 68
+S P+P G T + + +D+ ++ ++Y+R P + L S DFPNW
Sbjct: 141 LSTPSPESGNTFTDSSSADSDMTSTKKYVRPPPM--LTSPNDFPNW 184
>sp|P0CX72|YL12A_YEAST Transposon Ty1-LR2 Gag polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY1A-LR2 PE=2 SV=1
Length = 440
Score = 34.7 bits (78), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 23 VSIPTPFRGATKSPVACSDAACSAYEQYLRLPELRKLWSSRDFPNW 68
+S P+P G T + + +D+ ++ ++Y+R P + L S DFPNW
Sbjct: 141 LSTPSPESGNTFTDSSSADSDMTSTKKYVRPPPM--LTSPNDFPNW 184
>sp|P0CX71|YE11A_YEAST Transposon Ty1-ER1 Gag polyprotein OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TY1A-ER1 PE=2 SV=1
Length = 440
Score = 34.7 bits (78), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 23 VSIPTPFRGATKSPVACSDAACSAYEQYLRLPELRKLWSSRDFPNW 68
+S P+P G T + + +D+ ++ ++Y+R P + L S DFPNW
Sbjct: 141 LSTPSPESGNTFTDSSSADSDMTSTKKYVRPPPM--LTSPNDFPNW 184
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 168,288,228
Number of Sequences: 539616
Number of extensions: 6782220
Number of successful extensions: 17756
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 17682
Number of HSP's gapped (non-prelim): 74
length of query: 465
length of database: 191,569,459
effective HSP length: 121
effective length of query: 344
effective length of database: 126,275,923
effective search space: 43438917512
effective search space used: 43438917512
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)