Query 012382
Match_columns 465
No_of_seqs 27 out of 29
Neff 2.5
Searched_HMMs 46136
Date Fri Mar 29 02:03:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012382.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012382hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07014 Hs1pro-1_C: Hs1pro-1 100.0 8E-150 2E-154 1057.7 22.4 261 197-460 1-261 (261)
2 PF07231 Hs1pro-1_N: Hs1pro-1 100.0 1.1E-84 2.5E-89 592.7 14.0 172 1-194 1-182 (182)
3 TIGR03036 trp_2_3_diox tryptop 98.6 1.5E-06 3.3E-11 85.1 16.1 223 217-453 6-264 (264)
4 PF03301 Trp_dioxygenase: Tryp 98.2 5E-05 1.1E-09 77.0 14.8 231 216-453 14-346 (346)
5 COG3483 TDO2 Tryptophan 2,3-di 86.8 16 0.00035 36.8 12.9 196 246-451 29-260 (262)
6 PF05168 HEPN: HEPN domain; I 71.6 14 0.0003 29.5 5.9 42 255-296 1-43 (118)
7 KOG3906 Tryptophan 2,3-dioxyge 70.5 5.8 0.00013 41.1 4.3 78 244-323 64-148 (399)
8 PF14276 DUF4363: Domain of un 59.4 15 0.00032 31.4 4.1 32 263-294 29-60 (121)
9 TIGR03277 methan_mark_9 putati 50.7 7.9 0.00017 34.9 1.1 16 303-318 88-103 (109)
10 TIGR03277 methan_mark_9 putati 41.8 19 0.00042 32.5 2.2 30 303-332 37-67 (109)
11 COG4008 Predicted metal-bindin 35.4 25 0.00055 33.0 2.0 30 303-332 38-68 (153)
12 COG4008 Predicted metal-bindin 34.5 20 0.00043 33.7 1.1 16 303-318 89-104 (153)
13 PF14829 GPAT_N: Glycerol-3-ph 31.8 14 0.00029 31.7 -0.3 29 393-424 31-59 (77)
14 cd07625 BAR_Vps17p The Bin/Amp 30.4 5.3E+02 0.012 25.5 10.1 169 230-404 6-198 (230)
15 cd02010 TPP_ALS Thiamine pyrop 29.3 43 0.00093 30.3 2.4 53 306-365 125-177 (177)
16 PF08269 Cache_2: Cache domain 29.3 93 0.002 25.1 4.1 85 248-366 5-95 (95)
17 PF02291 TFIID-31kDa: Transcri 27.8 16 0.00035 33.1 -0.6 26 77-102 35-60 (129)
18 PF12830 Nipped-B_C: Sister ch 27.7 3.7E+02 0.0081 24.8 8.2 54 333-396 38-91 (187)
19 cd04754 Commd6 COMM_Domain con 27.4 16 0.00034 31.8 -0.7 11 1-11 22-32 (86)
20 PF14935 TMEM138: Transmembran 26.5 63 0.0014 29.6 2.9 45 56-107 63-118 (120)
21 PF15036 IL34: Interleukin 34; 25.9 65 0.0014 31.1 3.0 62 217-303 44-105 (169)
22 smart00668 CTLH C-terminal to 25.4 63 0.0014 23.4 2.3 22 265-286 4-25 (58)
23 COG4064 MtrG Tetrahydromethano 24.3 42 0.0009 28.7 1.3 16 303-318 10-25 (75)
24 PF14965 BRI3BP: Negative regu 22.7 3E+02 0.0065 26.9 6.7 49 246-298 3-56 (177)
25 PF02151 UVR: UvrB/uvrC motif; 22.3 1E+02 0.0022 22.0 2.7 22 262-283 4-25 (36)
26 PF01231 IDO: Indoleamine 2,3- 22.2 9.6E+02 0.021 25.5 14.7 171 242-412 152-364 (422)
27 COG0400 Predicted esterase [Ge 22.1 11 0.00024 36.0 -2.8 61 207-268 140-204 (207)
28 PRK06740 histidinol-phosphatas 21.6 3.1E+02 0.0067 27.9 7.0 31 329-359 115-150 (331)
29 PF01410 COLFI: Fibrillar coll 20.9 56 0.0012 31.2 1.6 28 337-364 10-39 (214)
30 PF01736 Polyoma_agno: Polyoma 20.8 82 0.0018 26.0 2.2 33 177-214 16-49 (62)
31 COG3019 Predicted metal-bindin 20.7 58 0.0013 30.9 1.6 63 304-366 55-122 (149)
32 KOG1156 N-terminal acetyltrans 20.0 1.3E+02 0.0028 34.4 4.3 72 249-348 474-548 (700)
No 1
>PF07014 Hs1pro-1_C: Hs1pro-1 protein C-terminus; InterPro: IPR009743 This entry represents the C terminus (approximately 270 residues) of a number of plant Hs1pro-1 proteins, which are believed to confer nematode resistance [].
Probab=100.00 E-value=7.8e-150 Score=1057.68 Aligned_cols=261 Identities=68% Similarity=1.146 Sum_probs=258.4
Q ss_pred cccccccccCCCCCCCCCcccccccccCccccccccCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012382 197 MRGCRYTLGLGEPNLAGKPNLEYDAVCKPHELHSLKKNPYDHQINNHENQTLYTAHQILESWIFTTQQLLKRIVSRIESK 276 (465)
Q Consensus 197 M~rc~yTLGLGEpNLaGKp~L~YD~vckP~evh~lk~t~~d~~~~n~En~tl~t~HQI~EsWi~va~~lL~ri~~~ie~~ 276 (465)
|+||+||||||||||||||+|+||+||||+|||+||++|||++|+|+|||||||||||+||||+||++||+||+++|++|
T Consensus 1 M~rc~yTLGLGEpNlaGKP~L~YD~vC~P~eihalk~~p~dd~i~n~En~tL~t~hQIlEsWi~~a~~LL~ri~~~i~~~ 80 (261)
T PF07014_consen 1 MMRCPYTLGLGEPNLAGKPVLEYDRVCRPNEIHALKTTPYDDHIGNHENHTLHTTHQILESWIHVARKLLERIEERIEAR 80 (261)
T ss_pred CCCCcccccCCCcccCCCCccccccccCHHHHHHhccCCcchhccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 89999999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHhhhcCChhHHHhhhhhhccccCCCCCCcccccchhhHHhhhhHHhhhhccceeeec
Q 012382 277 QFEEASNDCYLLERIWKLLSEIEDLHLLMDPDDFLRLKNQLSISSSSESGPFCFRSRGLFEITKQSKELKHNVPLILGVE 356 (465)
Q Consensus 277 ~~e~AA~dc~~vERIWKlL~eieDLhl~MDPdDFLrLK~qL~i~s~~~~~~fCfRSr~L~evtk~ckdLrh~VP~iLgVE 356 (465)
+|||||+|||+||||||||++|||||+|||||||||||+||+|++.+++++||||||+||||||||||||||||+|||||
T Consensus 81 ~~ekAa~dc~~vERiWKLL~eieDlhllMDPdDFlrLK~qL~iks~~~~~afCfRS~~Lvevtk~ckdLrhkVP~il~VE 160 (261)
T PF07014_consen 81 DFEKAASDCWIVERIWKLLAEIEDLHLLMDPDDFLRLKKQLAIKSAPETAAFCFRSKELVEVTKMCKDLRHKVPEILGVE 160 (261)
T ss_pred cHHHHHhHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhccccCCCCcchhhhHHHHHHHHHHHHHHHHhCChheEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCChHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccccccceeeeecCCcchhhhhh
Q 012382 357 VDPRGGPRVQEAAMRMYNEKKERDFAKIHLVQALQAVEAALKRFFYAYKQLLAVVMGSLEAKANGVVVVSGASSDSLSQL 436 (465)
Q Consensus 357 vDP~GGPr~QEAaM~lY~~~~~~~~~KihLLQa~QAVE~a~krFfy~YkQlv~~vmGS~Ea~gn~~~~vs~~~~d~Lsq~ 436 (465)
||||||||+||||||||+++++ ++||||||||||||+|||||||+|||||++||||+|||||++++ |+|++|+|+||
T Consensus 161 vDP~GGPriqEAaMkLy~~~~~--~ekihLLQa~QavE~a~krFff~YkQlv~~vMGS~Ea~~~~~~~-~~~~~D~Lsq~ 237 (261)
T PF07014_consen 161 VDPKGGPRIQEAAMKLYRRKGE--FEKIHLLQAFQAVEVAVKRFFFAYKQLVVAVMGSSEAKGNRVLF-SIESADSLSQI 237 (261)
T ss_pred eCCCCCchHHHHHHHHHHHcCC--cceeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhcCCcccc-cccccchHHHH
Confidence 9999999999999999988887 89999999999999999999999999999999999999999999 99999999999
Q ss_pred ccCCCCCCChhhHhhhhhhhhccc
Q 012382 437 FLEPTYYPSLDAAKTFLGEFWSHE 460 (465)
Q Consensus 437 flEP~yFPSLDaAKTFLG~~W~~~ 460 (465)
||||||||||||||||||+||+|+
T Consensus 238 flEPtYfPSLDaAKTFLg~~W~~~ 261 (261)
T PF07014_consen 238 FLEPTYFPSLDAAKTFLGYYWDND 261 (261)
T ss_pred hcCCCCCCchhHHHHHHHHhhccC
Confidence 999999999999999999999985
No 2
>PF07231 Hs1pro-1_N: Hs1pro-1 N-terminus; InterPro: IPR009869 This entry represents the N terminus (approximately 180 residues) of plant Hs1pro-1, which is believed to confer resistance to nematodes [].
Probab=100.00 E-value=1.1e-84 Score=592.69 Aligned_cols=172 Identities=69% Similarity=1.099 Sum_probs=166.7
Q ss_pred CcccccccCC-----CCCCCCCCcccccccCC----CccCCCCCcCCCchhhHHHHHhhhcchHHHHhhcCCCCCCCccc
Q 012382 1 MVDLDCKTKM-----PSKSPKLSNKLQVSIPT----PFRGATKSPVACSDAACSAYEQYLRLPELRKLWSSRDFPNWENE 71 (465)
Q Consensus 1 mvdl~w~~km-----~~kspkls~~~~~~ip~----p~r~~~~~~a~~~~~~c~aYe~YLrLPeLr~LW~s~~fP~W~nE 71 (465)
|||||||+|| |+||||||+++|++||+ |++++||++++++. |+|||+|||||||++||++++||||+||
T Consensus 1 MvDldwk~kM~~sd~~~kspkls~~~~~siP~~~~~~~~s~~is~as~~~--c~AYe~YLrLPeL~~LW~s~~fP~W~nE 78 (182)
T PF07231_consen 1 MVDLDWKAKMVSSDMPNKSPKLSLKLHVSIPSPLQLPSVSNDISVASSSA--CSAYELYLRLPELRRLWRSKDFPNWANE 78 (182)
T ss_pred CccchhhhcCcCCCCCCCCCccccccccccccccCCCcccCCCCCCChHH--HHHHHHHhcCHHHHHHhcCCCCCCCccc
Confidence 9999999999 89999999999999998 78889999887777 9999999999999999999999999999
Q ss_pred cchhhhhhhHHHHHHHHHHHhcCCCcccchhHHHHHHHHHhhhhHHHHHHHhccccC-CCCCCcccccccccccccCCCc
Q 012382 72 AVLKPALQALEITFRFVSIVLSDPRPYANRREFKRRLESLATSQIQLIASLCEDDDR-SGTAPIVDLTTENGFLARNRSS 150 (465)
Q Consensus 72 ~i~kPAL~aLEitFR~is~vlsD~RpYinrrEw~RrlESLat~Qielia~lcE~e~~-~G~aP~s~Ls~~~~~~~r~~s~ 150 (465)
||||||||||||||||||+||||||||||||||+||||||||+||||||+|||||++ +|+||+++||++
T Consensus 79 ~ivKPALqaLEitFR~is~vLsDpRPYinrrEw~RRlESLa~~qieiia~lcE~ee~~~g~aP~a~ls~~---------- 148 (182)
T PF07231_consen 79 PIVKPALQALEITFRFISTVLSDPRPYINRREWTRRLESLATSQIEIIAALCEDEEETRGTAPTADLSSS---------- 148 (182)
T ss_pred ccchHHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCccccccC----------
Confidence 999999999999999999999999999999999999999999999999999999999 999999999986
Q ss_pred ccccccCCCCccccccccccccchhhhhhhccHHHHHHHHHHhh
Q 012382 151 AEVWKVPGGESTLVNRTSEYSLLPRLATWQKSEDAADKIMYIIE 194 (465)
Q Consensus 151 ~evw~~p~~~~~~Vs~~Se~SLLprLatW~~s~~va~ki~~~IE 194 (465)
+++|+|+|++|||||||||+|||+|||||+|+||
T Consensus 149 ----------~~~v~~~Se~SLLPrLAtW~kse~va~ril~aIE 182 (182)
T PF07231_consen 149 ----------ASVVSRYSEASLLPRLATWQKSEDVAQRILYAIE 182 (182)
T ss_pred ----------ccceechhhhhhhhhhhhhhhHHHHHHHHHhhcC
Confidence 3679999999999999999999999999999998
No 3
>TIGR03036 trp_2_3_diox tryptophan 2,3-dioxygenase. Members of this family are tryptophan 2,3-dioxygenase, as confirmed by several experimental characterizations, and by conserved operon structure for many of the other members. This enzyme represents the first of a two-step degradation to L-kynurenine, and a three-step pathway (via kynurenine) to anthranilate plus alanine.
Probab=98.61 E-value=1.5e-06 Score=85.14 Aligned_cols=223 Identities=19% Similarity=0.286 Sum_probs=159.0
Q ss_pred cccccccCccccccccCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHHHHH
Q 012382 217 LEYDAVCKPHELHSLKKNPYDHQINNHENQTLYTAHQILESWIFTTQQLLKRIVSRIESKQFEEASNDCYLLERIWKLLS 296 (465)
Q Consensus 217 L~YD~vckP~evh~lk~t~~d~~~~n~En~tl~t~HQI~EsWi~va~~lL~ri~~~ie~~~~e~AA~dc~~vERIWKlL~ 296 (465)
+.|..-.+=.++++|.+...| +|.-..+-.+||+.|-|......=|+.+.+.+.+++...|.+.---+.||.+.|.
T Consensus 6 ~~Y~~Yl~ld~LLslQ~p~s~----~hDE~lFIv~HQ~~ELwfklil~El~~a~~~l~~~~~~~a~~~L~Rv~~i~~~L~ 81 (264)
T TIGR03036 6 MSYGDYLQLDTLLSAQHPLSD----DHDEMLFIVQHQTSELWMKLILHELRAARRAIRADDLPPAFKMLARVSRIQEQLN 81 (264)
T ss_pred CCHHHHHchHHHHhcCCCCCC----CCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 567666777788898877764 4566677789999999999999999999999999999999877788889999999
Q ss_pred HHHHhhhcCChhHHHhhhhhhccccCCCCCCccccc---------chhhHHhhhhHHhhh--------------------
Q 012382 297 EIEDLHLLMDPDDFLRLKNQLSISSSSESGPFCFRS---------RGLFEITKQSKELKH-------------------- 347 (465)
Q Consensus 297 eieDLhl~MDPdDFLrLK~qL~i~s~~~~~~fCfRS---------r~L~evtk~ckdLrh-------------------- 347 (465)
+.-+++-=|.|.||+..+..|+-.|+-.+.. ||- ...+.+-+.-.+.+.
T Consensus 82 ~~~~vL~tMtp~df~~FR~~Lg~aSGfQS~q--yR~iE~~lG~k~~~~l~~~~~~p~~~~~L~~~l~~PSLyd~~l~~L~ 159 (264)
T TIGR03036 82 QAWDVLATMTPAEYSEFRDALGQSSGFQSYQ--YREIEFLLGNKNAAMLRPHEHDPELHAELEAALHAPSLYDEALRLLA 159 (264)
T ss_pred HHHHHHcCCCHHHHHHHHHHhCCcchhhhHH--HHHHHHHhCCCcHHHhccccCChHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 9999999999999999999998777654322 221 111111111111111
Q ss_pred ----hcc-ceee--ecccCCCChHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccccccc
Q 012382 348 ----NVP-LILG--VEVDPRGGPRVQEAAMRMYNEKKERDFAKIHLVQALQAVEAALKRFFYAYKQLLAVVMGSLEAKAN 420 (465)
Q Consensus 348 ----~VP-~iLg--VEvDP~GGPr~QEAaM~lY~~~~~~~~~KihLLQa~QAVE~a~krFfy~YkQlv~~vmGS~Ea~gn 420 (465)
.|| ++|+ +...-..-|.+.+|--.+|..... ..+--.|+++|--|+..+.++=|+|-++|-=|||+-. ||
T Consensus 160 r~G~~vp~~~l~rd~~~~~~~~~~v~~~w~~vY~~~~~-~~~ly~L~E~L~dide~f~~WR~rH~~~VeR~IG~K~--GT 236 (264)
T TIGR03036 160 RRGFPIPAEVLERDWTQPYEPNPEVEAAWLEVYRDPDR-YWELYELAEKLVDLEDLFRQWRFRHLTTVERIIGFKR--GT 236 (264)
T ss_pred HcCCCCcHHHHhccccccccccHHHHHHHHHHhcCccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CC
Confidence 122 0111 001123456677777788888765 2244578999999999999999999999999999732 33
Q ss_pred eeeeecCCcchhhhhhccCCCCCCChhhHhhhh
Q 012382 421 GVVVVSGASSDSLSQLFLEPTYYPSLDAAKTFL 453 (465)
Q Consensus 421 ~~~~vs~~~~d~Lsq~flEP~yFPSLDaAKTFL 453 (465)
.- +.|.+-|.. =++=++||-|=.++|.|
T Consensus 237 GG----SsG~~yLr~-~l~~~~FPeLw~~rt~l 264 (264)
T TIGR03036 237 GG----SSGVAYLKK-MLDVVLFPELWTVRTEL 264 (264)
T ss_pred CC----CccHHHHHH-hccCccCHHHHhhhccC
Confidence 21 224466666 35788999998887754
No 4
>PF03301 Trp_dioxygenase: Tryptophan 2,3-dioxygenase; InterPro: IPR004981 This is a family of tryptophan 2,3-dioxygenase (1.13.11.11 from EC) enzymes involved in tryptophan metabolism, which catalyse the reaction: L-Tryptophan + O(2) = L-Formylkynurenine ; GO: 0004833 tryptophan 2,3-dioxygenase activity, 0005506 iron ion binding, 0016491 oxidoreductase activity, 0019441 tryptophan catabolic process to kynurenine, 0055114 oxidation-reduction process; PDB: 2NW9_A 2NW7_C 1YW0_C 3BK9_C 3E08_B 2NW8_A 2NOX_A.
Probab=98.15 E-value=5e-05 Score=76.98 Aligned_cols=231 Identities=23% Similarity=0.334 Sum_probs=144.5
Q ss_pred ccccccccCccccccccCCCCcc-cccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhh-----hhHHHHH
Q 012382 216 NLEYDAVCKPHELHSLKKNPYDH-QINNHENQTLYTAHQILESWIFTTQQLLKRIVSRIESKQFEEAS-----NDCYLLE 289 (465)
Q Consensus 216 ~L~YD~vckP~evh~lk~t~~d~-~~~n~En~tl~t~HQI~EsWi~va~~lL~ri~~~ie~~~~e~AA-----~dc~~vE 289 (465)
-+.|..-.+=.+|++|-+...+. .-..|.-+.+-.+||+.|-|.....-=|+.+.+.+.+++...|. +..--+-
T Consensus 14 ~~~Y~dYl~ld~LLslQ~~~s~~~~~~~hDE~lFIv~HQ~~ELwfKlil~EL~~a~~~l~~~~~~~a~~~~~~~~L~Rv~ 93 (346)
T PF03301_consen 14 GLTYGDYLQLDTLLSLQKPRSDDGGPPAHDEMLFIVVHQVYELWFKLILHELDSAREALRADDVDEAFMLKVVKRLRRVV 93 (346)
T ss_dssp STSHHHHTTHHHHTT----SSS---S--TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHH-----HHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCCCcccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 37777777888888887766641 12355666788999999999999999999999999999999888 8888888
Q ss_pred HHHHHHHHHHHhhhcCChhHHHhhhhhhccccCCCCCCc-----------------------------------ccccch
Q 012382 290 RIWKLLSEIEDLHLLMDPDDFLRLKNQLSISSSSESGPF-----------------------------------CFRSRG 334 (465)
Q Consensus 290 RIWKlL~eieDLhl~MDPdDFLrLK~qL~i~s~~~~~~f-----------------------------------CfRSr~ 334 (465)
||.++|.+.-+++--|.|.||+..+.-|+-.|+-.+..| ..+...
T Consensus 94 ~i~~~l~~~~~vL~TMTp~dF~~FR~~Lg~aSGfQS~qyR~iE~~lG~k~~~ri~~~~~y~~~~~~~~~~~l~~~~~~~s 173 (346)
T PF03301_consen 94 RILELLVQQFDVLETMTPEDFLEFRDYLGPASGFQSAQYRLIEFLLGNKDERRIKYNQQYKEAFNDEDRERLLRSHREPS 173 (346)
T ss_dssp HHHHHHHHTHHHHTT--HHHHCCCGGGCTT--GGG-HHHHHHHHHCT---GG-------------------GGGGGTT-H
T ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHHhCCCCCcccHHHHHHHHHHcCCCcccccchhccchhhhhHHHHHHHhhhcCCC
Confidence 999999999999999999999999999886665421110 011111
Q ss_pred hhH--------------------------HhhhhHHhhhhc----cce-eeecc--cCCCChHHHHHHHH----------
Q 012382 335 LFE--------------------------ITKQSKELKHNV----PLI-LGVEV--DPRGGPRVQEAAMR---------- 371 (465)
Q Consensus 335 L~e--------------------------vtk~ckdLrh~V----P~i-LgVEv--DP~GGPr~QEAaM~---------- 371 (465)
+++ |.++..++.++. |.- +.-.+ +-...+.+-+|...
T Consensus 174 ~~~~~~~wLertPgle~~~f~fw~~~~~sv~d~~~~~~~~~~~~~~~~~~~~~l~~~y~~~~~v~~a~fd~~~~~~~~~~ 253 (346)
T PF03301_consen 174 LLHLVLRWLERTPGLEEDGFNFWQKYKKSVYDMLLRLLARAGFPVPEEELERDLSAEYEKNKEVFDAWFDEEKHEALLAR 253 (346)
T ss_dssp HHHHHHHHHHHS-----------------HHHHHHHHHHHTT----HHHHSS-TTS-----HHHHHHHHH----------
T ss_pred HHHHHHHHHHhCccccccccchhhhhHHHHHHHHHHHHHHhcccCcHHHHHHHHHhhcccCHHHHHHHHHhccccccccc
Confidence 111 111222222211 110 00000 11222223333333
Q ss_pred -----------------HhhhccccCcchHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccccccceeeeecCCcchhhh
Q 012382 372 -----------------MYNEKKERDFAKIHLVQALQAVEAALKRFFYAYKQLLAVVMGSLEAKANGVVVVSGASSDSLS 434 (465)
Q Consensus 372 -----------------lY~~~~~~~~~KihLLQa~QAVE~a~krFfy~YkQlv~~vmGS~Ea~gn~~~~vs~~~~d~Ls 434 (465)
+|..... ...--.|+.++--|+-++.+|=|.|-.+|-=|||+.- ||.-. .+.+-|.
T Consensus 254 g~rr~s~~A~~~a~~i~~Yr~~~~-~~~~~~l~e~L~d~de~~~~WR~~H~~~v~R~iG~k~--GTGGs----sG~~yL~ 326 (346)
T PF03301_consen 254 GERRLSHKALQGALFIEVYRDEPR-FWDLYQLAEALVDIDELFQRWRYRHVKMVERMIGSKP--GTGGS----SGVDYLR 326 (346)
T ss_dssp ----------------HHHHTCCC-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTS---STTSS----SCHHHHH
T ss_pred ccccccccccccccccCCCCCCcc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCCC----ChHHHHH
Confidence 6666544 2244678999999999999999999999999999933 33221 2446677
Q ss_pred h-hccCCCCCCChhhHhhhh
Q 012382 435 Q-LFLEPTYYPSLDAAKTFL 453 (465)
Q Consensus 435 q-~flEP~yFPSLDaAKTFL 453 (465)
+ +-++-.+||-|=.++|||
T Consensus 327 ~t~~~~~~~FpeLw~~rt~l 346 (346)
T PF03301_consen 327 RTVSLRYRFFPELWNLRTFL 346 (346)
T ss_dssp H--HHC--SSHHHHHHHHT-
T ss_pred HhhccccCcCHHHHhhhcCC
Confidence 7 567778999999999997
No 5
>COG3483 TDO2 Tryptophan 2,3-dioxygenase (vermilion) [Amino acid transport and metabolism]
Probab=86.78 E-value=16 Score=36.82 Aligned_cols=196 Identities=19% Similarity=0.288 Sum_probs=134.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHHHHHHHHHhhhcCChhHHHhhhhhhccccCCCC
Q 012382 246 QTLYTAHQILESWIFTTQQLLKRIVSRIESKQFEEASNDCYLLERIWKLLSEIEDLHLLMDPDDFLRLKNQLSISSSSES 325 (465)
Q Consensus 246 ~tl~t~HQI~EsWi~va~~lL~ri~~~ie~~~~e~AA~dc~~vERIWKlL~eieDLhl~MDPdDFLrLK~qL~i~s~~~~ 325 (465)
.-+-.+||.-|-|......=|+-..+.|.+|+.+-|-+--.-|.||..-|...=|++--|.|-||+..+.-|+-+|+..
T Consensus 29 ~LFIv~Hqt~ElW~klilhEl~aA~~llr~~~~~pa~kmL~Rv~ri~eql~~aw~Vl~TMTp~dyl~fR~~lgqsSGFQ- 107 (262)
T COG3483 29 MLFIVQHQTSELWMKLILHELRAARDLLRADDLPPALKMLARVSRIFEQLNQAWDVLATMTPADYLDFRDALGQSSGFQ- 107 (262)
T ss_pred ceeeehhHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcccccch-
Confidence 3355789999999999999999999999999999999999999999999999999999999999999999998877543
Q ss_pred CCcccccc---------hhhHHhhhhHH------------------hhhhccceeeecc-----cC----CCChHHHHHH
Q 012382 326 GPFCFRSR---------GLFEITKQSKE------------------LKHNVPLILGVEV-----DP----RGGPRVQEAA 369 (465)
Q Consensus 326 ~~fCfRSr---------~L~evtk~ckd------------------Lrh~VP~iLgVEv-----DP----~GGPr~QEAa 369 (465)
++-||-- .|..+-|---| +|...---+.|.. |+ +--+-+-.|=
T Consensus 108 -S~qyR~iEfllGnkn~all~pH~hR~e~~~~L~aal~~pslydeairllar~g~~v~ae~~~rD~~~~~~~~e~V~aAw 186 (262)
T COG3483 108 -SYQYREIEFLLGNKNAALLKPHKHRAELLARLKAALETPSLYDEAIRLLARQGLDVGAEALERDWSATYTTNEAVEAAW 186 (262)
T ss_pred -HHHHHHHHHHHcCcchhhhCccccCHHHHHHHHHHhcCCccHHHHHHHHHhcCCCCcHHHHhcccccccccCHHHHHHH
Confidence 2222211 11111010011 1111111111111 22 2223444555
Q ss_pred HHHhhhccccCcchHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccccccceeeeecCCcchhhhhhccCCCCCCChhhH
Q 012382 370 MRMYNEKKERDFAKIHLVQALQAVEAALKRFFYAYKQLLAVVMGSLEAKANGVVVVSGASSDSLSQLFLEPTYYPSLDAA 449 (465)
Q Consensus 370 M~lY~~~~~~~~~KihLLQa~QAVE~a~krFfy~YkQlv~~vmGS~Ea~gn~~~~vs~~~~d~Lsq~flEP~yFPSLDaA 449 (465)
.++|..+.. .-+--.|..-+=-+|-++++.=|.|---|--+||----.|. .++.+-|.+ -|+--.||.|=.-
T Consensus 187 ~evYrdp~~-yW~lyeLaEklvdled~fr~WRfrHvttVERiIG~k~GTGG------TsGv~YL~~-~L~~~lFpeLW~v 258 (262)
T COG3483 187 LEVYRDPQR-YWELYELAEKLVDLEDSFRRWRFRHVTTVERIIGFKRGTGG------TSGVGYLRS-MLDVVLFPELWTV 258 (262)
T ss_pred HHHHhCHHH-HhHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHhcCCCCCCC------cchHHHHHH-HhHHhhhHHHHHH
Confidence 677887664 22335677778889999999999998888889987433332 235577888 6788888877555
Q ss_pred hh
Q 012382 450 KT 451 (465)
Q Consensus 450 KT 451 (465)
+|
T Consensus 259 Rt 260 (262)
T COG3483 259 RT 260 (262)
T ss_pred hc
Confidence 54
No 6
>PF05168 HEPN: HEPN domain; InterPro: IPR007842 The HEPN (higher eukaryotes and prokaryotes nucleotide-binding) domain is a region of 110 residues found in the C terminus of sacsin, a chaperonin implicated in an early-onset neurodegenerative disease in human, and in many bacterial and archeabacterial proteins. There are three classes of proteins with HEPN domain: Single-domain HEPN proteins found in many bacteria. Two-domain proteins with N-terminal nucleotidyltransferase (NT) and C- terminal HEPN domains. This N-terminal NT domain belongs to a large family of NTs, which includes several classes of enzymes that are responsible for some types of bacterial resistance to aminoglycosides. These enzymes deactivate various antibiotics by transferring a nucleotidyl group to the drug. A multidomain sacsin protein in genomes of fish and mammals. The HEPN domain is located at the C terminus of the protein, directly after the DnaJ domain (see PDOC00553 from PROSITEDOC). The crystal structure of the HEPN domain from the TM0613 protein of Thermotoga maritima indicates that it is structurally similar to the C-terminal all- alpha-helical domain of kanamycin nucleotidyltransferases (KNTases). It is composed of five alpha helices, three of which form an up- and-down helical bundle, with a pair of short helices on the side. The distant structural similarity suggests that the HEPN domain might be involved in nucleotide binding [].; PDB: 1O3U_A 1WOL_A 3O10_D 2HSB_A 1UFB_A.
Probab=71.61 E-value=14 Score=29.46 Aligned_cols=42 Identities=19% Similarity=0.242 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcchhhhhhhH-HHHHHHHHHHH
Q 012382 255 LESWIFTTQQLLKRIVSRIESKQFEEASNDC-YLLERIWKLLS 296 (465)
Q Consensus 255 ~EsWi~va~~lL~ri~~~ie~~~~e~AA~dc-~~vERIWKlL~ 296 (465)
++.|+.-|...|+..+..++.|.+..|+..| +.+|...|-|.
T Consensus 1 ~~~~~~~A~~~l~~A~~~~~~~~~~~a~~~a~~a~e~~lkAll 43 (118)
T PF05168_consen 1 YQDWLEKAEEDLKAAEILLEEGDYNWAVFHAYQAVEKALKALL 43 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999 56899888664
No 7
>KOG3906 consensus Tryptophan 2,3-dioxygenase [Amino acid transport and metabolism]
Probab=70.48 E-value=5.8 Score=41.10 Aligned_cols=78 Identities=22% Similarity=0.316 Sum_probs=60.5
Q ss_pred CchHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhcchhhhhhhHHHHHHHHHHHHHHHHhhhcCChhHHHhhhhh
Q 012382 244 ENQTLYTAHQILESWIFT-------TQQLLKRIVSRIESKQFEEASNDCYLLERIWKLLSEIEDLHLLMDPDDFLRLKNQ 316 (465)
Q Consensus 244 En~tl~t~HQI~EsWi~v-------a~~lL~ri~~~ie~~~~e~AA~dc~~vERIWKlL~eieDLhl~MDPdDFLrLK~q 316 (465)
..|-+-.|||--|-|..- .+++|+ +.-|.+.+-=|-.+.-.-|-.|.|||.+---++--|.|=||+..++-
T Consensus 64 DEHLFIitHQAyELWFKQIifelDsvR~~l~--~~v~DEtktLkiVsrl~Rv~~ILkLLv~Q~~iLeTMtpLDF~DFRkY 141 (399)
T KOG3906|consen 64 DEHLFIITHQAYELWFKQIIFELDSVRKLLN--NTVVDETKTLKIVSRLDRVTKILKLLVEQITILETMTPLDFVDFRKY 141 (399)
T ss_pred cceeEEEehHHHHHHHHHHHHhhHHHHHHhc--chhhcchhHHHHHHhHHHHHHHHHHHHHHhhHHhhcCccchHHHHHh
Confidence 345667789999999754 445555 44556666677778888888999999999999999999999998888
Q ss_pred hccccCC
Q 012382 317 LSISSSS 323 (465)
Q Consensus 317 L~i~s~~ 323 (465)
|.--|+.
T Consensus 142 L~PASGF 148 (399)
T KOG3906|consen 142 LTPASGF 148 (399)
T ss_pred cCccccc
Confidence 7755543
No 8
>PF14276 DUF4363: Domain of unknown function (DUF4363)
Probab=59.44 E-value=15 Score=31.42 Aligned_cols=32 Identities=28% Similarity=0.495 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhhcchhhhhhhHHHHHHHHHH
Q 012382 263 QQLLKRIVSRIESKQFEEASNDCYLLERIWKL 294 (465)
Q Consensus 263 ~~lL~ri~~~ie~~~~e~AA~dc~~vERIWKl 294 (465)
...|+.|++.|++++|++|.+..-.++.-|+-
T Consensus 29 ~~~l~~i~~~i~~~dW~~A~~~~~~l~~~W~k 60 (121)
T PF14276_consen 29 EEQLEQIEEAIENEDWEKAYKETEELEKEWDK 60 (121)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 45689999999999999999999999988874
No 9
>TIGR03277 methan_mark_9 putative methanogenesis marker domain 9. A gene for a protein that contains a copy of this domain, to date, is found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. A 69-amino acid core region of this 110-amino acid domain contains eight invariant Cys residues, including two copies of a motif [WFY]CCxxKPC. These motifs could be consistent with predicted metal-binding transcription factor as was suggested for the COG4008 family. Some members of this family have an additional N-terminal domain of about 250 amino acids from the nifR3 family of predicted TIM-barrel proteins.
Probab=50.70 E-value=7.9 Score=34.88 Aligned_cols=16 Identities=31% Similarity=0.814 Sum_probs=14.4
Q ss_pred hcCChhHHHhhhhhhc
Q 012382 303 LLMDPDDFLRLKNQLS 318 (465)
Q Consensus 303 l~MDPdDFLrLK~qL~ 318 (465)
.=|+|+||++||++|+
T Consensus 88 igls~~EYm~lKkela 103 (109)
T TIGR03277 88 IGMSPEEYMELKKKLA 103 (109)
T ss_pred cCCCHHHHHHHHHHHH
Confidence 4599999999999997
No 10
>TIGR03277 methan_mark_9 putative methanogenesis marker domain 9. A gene for a protein that contains a copy of this domain, to date, is found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. A 69-amino acid core region of this 110-amino acid domain contains eight invariant Cys residues, including two copies of a motif [WFY]CCxxKPC. These motifs could be consistent with predicted metal-binding transcription factor as was suggested for the COG4008 family. Some members of this family have an additional N-terminal domain of about 250 amino acids from the nifR3 family of predicted TIM-barrel proteins.
Probab=41.83 E-value=19 Score=32.49 Aligned_cols=30 Identities=27% Similarity=0.615 Sum_probs=20.1
Q ss_pred hcCChhHHHhhhhhhccccCC-CCCCccccc
Q 012382 303 LLMDPDDFLRLKNQLSISSSS-ESGPFCFRS 332 (465)
Q Consensus 303 l~MDPdDFLrLK~qL~i~s~~-~~~~fCfRS 332 (465)
+=|.|+||.++|.|.+-++-= ....-||=|
T Consensus 37 ~~~sp~ef~~~K~ef~~~T~L~~G~~TCFGS 67 (109)
T TIGR03277 37 LGLSPQEFVRIKEEFAKGTPLGQGENTCFGS 67 (109)
T ss_pred cCCCHHHHHHHHHHHhccCcccCCCCccccc
Confidence 348999999999999844432 222445544
No 11
>COG4008 Predicted metal-binding transcription factor [Transcription]
Probab=35.37 E-value=25 Score=32.99 Aligned_cols=30 Identities=27% Similarity=0.561 Sum_probs=23.0
Q ss_pred hcCChhHHHhhhhhhccccCCCC-CCccccc
Q 012382 303 LLMDPDDFLRLKNQLSISSSSES-GPFCFRS 332 (465)
Q Consensus 303 l~MDPdDFLrLK~qL~i~s~~~~-~~fCfRS 332 (465)
+=|+|+||.|.|++.+-++--+. ..-||-|
T Consensus 38 ~g~tpeefir~K~eFak~T~Lg~Ge~TCFGS 68 (153)
T COG4008 38 LGLTPEEFIRIKEEFAKRTMLGYGENTCFGS 68 (153)
T ss_pred hCCCHHHHHHHHHHHhhccccccCCCcccce
Confidence 35899999999999996665433 3678876
No 12
>COG4008 Predicted metal-binding transcription factor [Transcription]
Probab=34.46 E-value=20 Score=33.67 Aligned_cols=16 Identities=38% Similarity=0.868 Sum_probs=14.5
Q ss_pred hcCChhHHHhhhhhhc
Q 012382 303 LLMDPDDFLRLKNQLS 318 (465)
Q Consensus 303 l~MDPdDFLrLK~qL~ 318 (465)
+=|.|+.||.||+||+
T Consensus 89 i~mS~~EYM~lKkqLa 104 (153)
T COG4008 89 INMSPEEYMELKKQLA 104 (153)
T ss_pred cCCCHHHHHHHHHHHH
Confidence 3489999999999998
No 13
>PF14829 GPAT_N: Glycerol-3-phosphate acyltransferase N-terminal; PDB: 1IUQ_A 1K30_A.
Probab=31.83 E-value=14 Score=31.69 Aligned_cols=29 Identities=28% Similarity=0.535 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhHHHHHHHhhcccccccceeee
Q 012382 393 VEAALKRFFYAYKQLLAVVMGSLEAKANGVVV 424 (465)
Q Consensus 393 VE~a~krFfy~YkQlv~~vmGS~Ea~gn~~~~ 424 (465)
|..+|..||+.||. +|++|+-.+++...+
T Consensus 31 va~gmeelY~NYk~---AVl~Sg~p~A~eivl 59 (77)
T PF14829_consen 31 VAAGMEELYQNYKN---AVLQSGDPNADEIVL 59 (77)
T ss_dssp HHHHHHHHHHHHHH---HHHHTT-TTHHHHHH
T ss_pred HHHHHHHHHHHHHH---HHHhCCCCCccHHHH
Confidence 67788999999996 788998888875544
No 14
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=30.44 E-value=5.3e+02 Score=25.54 Aligned_cols=169 Identities=17% Similarity=0.190 Sum_probs=95.0
Q ss_pred cccCC--CCcccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------cchhhhhhhHHHHH------HHHH
Q 012382 230 SLKKN--PYDHQINNHENQTLYTAHQILESWIFTTQQLLKRIVSRIES--------KQFEEASNDCYLLE------RIWK 293 (465)
Q Consensus 230 ~lk~t--~~d~~~~n~En~tl~t~HQI~EsWi~va~~lL~ri~~~ie~--------~~~e~AA~dc~~vE------RIWK 293 (465)
.|||- |||+ .+| |--.--|+.+--.++++|-..+..-++. .+|.++...+-..| +.|.
T Consensus 6 ~lkq~~~p~d~---~~e---l~~~rp~vk~~y~~~~~l~~~~~~lvk~rr~La~~~~dfg~~l~~Ls~~E~~~~L~~a~~ 79 (230)
T cd07625 6 TLKQFAPPYDE---YTE---LAEFRPLVKSIYLTAQDLQEKLLRVSKARKQLSLEEADFGQKLIQLSVEETHHGLGNLYE 79 (230)
T ss_pred hhhccCcCCCC---CHH---HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHH
Confidence 35665 4554 334 4444457888888888877777666654 46889988888888 6777
Q ss_pred HHH----HHHHhhhcCChhHHHhhhhhhccccCC---CCCCcccccchhhHHhhhhHHhhhhccceeeecccCCCCh-HH
Q 012382 294 LLS----EIEDLHLLMDPDDFLRLKNQLSISSSS---ESGPFCFRSRGLFEITKQSKELKHNVPLILGVEVDPRGGP-RV 365 (465)
Q Consensus 294 lL~----eieDLhl~MDPdDFLrLK~qL~i~s~~---~~~~fCfRSr~L~evtk~ckdLrh~VP~iLgVEvDP~GGP-r~ 365 (465)
-|+ .+.|+|...--.|+..|=.=|.--+.. --.+|-=|-.-+.|....+..++.|=-.+--...=|+=-| ++
T Consensus 80 kLg~v~~~v~dl~~~QA~~d~~tl~d~L~~~~~~~~~vKealtnR~~~~re~~qAq~~~~~K~~~~~rlk~s~~i~~~Kv 159 (230)
T cd07625 80 KFGKVLTAVGDIDSIQATVDMATLYDGLEWISRDAYVVKEALTNRHLLMRELIQAQQNTKSKQEAARRLKAKRDINPLKV 159 (230)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHhH
Confidence 776 677888776666666554444311100 0114445777777777777777665333222221111114 77
Q ss_pred HHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHHhH
Q 012382 366 QEAAMRMYNEKKERDFAKIHLVQALQAVEAALKRFFYAY 404 (465)
Q Consensus 366 QEAaM~lY~~~~~~~~~KihLLQa~QAVE~a~krFfy~Y 404 (465)
.||.+.|=.+....+.-.-++=+-=+-+...+++|+-.+
T Consensus 160 deA~~~l~eA~~~e~~l~~k~~rIs~nm~~E~~rf~~~~ 198 (230)
T cd07625 160 DEAIRQLEEATKHEHDLSLKLKRITGNMLIERKEWTDWT 198 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777754443211222222223344445556666544
No 15
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=29.35 E-value=43 Score=30.34 Aligned_cols=53 Identities=11% Similarity=0.154 Sum_probs=38.0
Q ss_pred ChhHHHhhhhhhccccCCCCCCcccccchhhHHhhhhHHhhhhccceeeecccCCCChHH
Q 012382 306 DPDDFLRLKNQLSISSSSESGPFCFRSRGLFEITKQSKELKHNVPLILGVEVDPRGGPRV 365 (465)
Q Consensus 306 DPdDFLrLK~qL~i~s~~~~~~fCfRSr~L~evtk~ckdLrh~VP~iLgVEvDP~GGPr~ 365 (465)
++-||-++=..++++. ..+-...+|.+..+.+.+ ..-|.+++|.+||...+|+
T Consensus 125 ~~~d~~~~a~a~G~~~-----~~v~~~~el~~al~~a~~--~~~p~liev~~~~~~~~~~ 177 (177)
T cd02010 125 GNPDFVKYAESFGAKG-----YRIESADDLLPVLERALA--ADGVHVIDCPVDYSENIRL 177 (177)
T ss_pred CCCCHHHHHHHCCCEE-----EEECCHHHHHHHHHHHHh--CCCCEEEEEEecccccCCC
Confidence 4668988888887653 222234667777766654 5789999999999888874
No 16
>PF08269 Cache_2: Cache domain; InterPro: IPR013163 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions []. This entry is composed of the type 2 Cache domain.; PDB: 2QHK_A 4EXO_A.
Probab=29.30 E-value=93 Score=25.10 Aligned_cols=85 Identities=15% Similarity=0.212 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHHHHHHHHHhhhcCChhHHHhhhhhhccccCCCCCC
Q 012382 248 LYTAHQILESWIFTTQQLLKRIVSRIESKQFEEASNDCYLLERIWKLLSEIEDLHLLMDPDDFLRLKNQLSISSSSESGP 327 (465)
Q Consensus 248 l~t~HQI~EsWi~va~~lL~ri~~~ie~~~~e~AA~dc~~vERIWKlL~eieDLhl~MDPdDFLrLK~qL~i~s~~~~~~ 327 (465)
+..-.+-+..=+..|.++++.+.+...+|+.......--+.+.| +.+.. ++.+-.
T Consensus 5 ~~~~k~~l~~~v~~a~~~i~~~~~~~~~g~ls~eea~~~a~~~l-----------------------~~~r~--~~~gY~ 59 (95)
T PF08269_consen 5 LEERKEQLKNVVESAISLIESYYAQAQAGKLSEEEAQQQAREAL-----------------------RALRY--GGDGYF 59 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHC-STT-----TTHHHHHHHH-----------------------HH--S--BTTB--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH-----------------------hcccc--CCCCeE
Confidence 44445556667788999999999999999988877765555554 22222 333447
Q ss_pred cccccc--hhhHHhhhhHHhhhhccceeeecc----cCCCChHHH
Q 012382 328 FCFRSR--GLFEITKQSKELKHNVPLILGVEV----DPRGGPRVQ 366 (465)
Q Consensus 328 fCfRSr--~L~evtk~ckdLrh~VP~iLgVEv----DP~GGPr~Q 366 (465)
|++-.. -|+++. -|...|.-+ ||+|-|-+|
T Consensus 60 fi~d~~g~~l~hp~---------~p~~~G~n~~~~~D~~G~~~ik 95 (95)
T PF08269_consen 60 FIYDMDGVVLAHPS---------NPELEGKNLSDLKDPNGKYLIK 95 (95)
T ss_dssp EEE-TTSBEEEESS----------GGGTT-B-TT-B-TT--BHH-
T ss_pred EEEeCCCeEEEcCC---------CcccCCcccccCCCCCCCEEeC
Confidence 787764 344444 477888776 999988765
No 17
>PF02291 TFIID-31kDa: Transcription initiation factor IID, 31kD subunit; InterPro: IPR003162 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription []. TAFII-31 protein is a transcriptional coactivator of the p53 protein [].; GO: 0006352 transcription initiation, DNA-dependent; PDB: 1TAF_A.
Probab=27.79 E-value=16 Score=33.15 Aligned_cols=26 Identities=38% Similarity=0.588 Sum_probs=22.9
Q ss_pred hhhhHHHHHHHHHHHhcCCCcccchh
Q 012382 77 ALQALEITFRFVSIVLSDPRPYANRR 102 (465)
Q Consensus 77 AL~aLEitFR~is~vlsD~RpYinrr 102 (465)
..|-||.+||.++.||.|.+=|.+..
T Consensus 35 v~qLLEfayRYt~~vL~DA~~ya~hA 60 (129)
T PF02291_consen 35 VNQLLEFAYRYTSDVLEDAQVYADHA 60 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46889999999999999999988654
No 18
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=27.71 E-value=3.7e+02 Score=24.83 Aligned_cols=54 Identities=20% Similarity=0.427 Sum_probs=37.4
Q ss_pred chhhHHhhhhHHhhhhccceeeecccCCCChHHHHHHHHHhhhccccCcchHHHHHHHHHHHHH
Q 012382 333 RGLFEITKQSKELKHNVPLILGVEVDPRGGPRVQEAAMRMYNEKKERDFAKIHLVQALQAVEAA 396 (465)
Q Consensus 333 r~L~evtk~ckdLrh~VP~iLgVEvDP~GGPr~QEAaM~lY~~~~~~~~~KihLLQa~QAVE~a 396 (465)
.+|+++. +-||.++..|.||+ |.+...|+++...-.+.+.+=++ -+..++|..|
T Consensus 38 qGLvnP~-------~cvp~lIAL~ts~~--~~ir~~A~~~l~~l~eK~~s~v~-~~~~~gi~~a 91 (187)
T PF12830_consen 38 QGLVNPK-------QCVPTLIALETSPN--PSIRSRAYQLLKELHEKHESLVE-SRYSEGIRLA 91 (187)
T ss_pred cCCCChH-------HHHhHhhhhhCCCC--hHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHH
Confidence 5677776 44999999999987 68889998887766442323232 3556666655
No 19
>cd04754 Commd6 COMM_Domain containing protein 6. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.
Probab=27.43 E-value=16 Score=31.77 Aligned_cols=11 Identities=36% Similarity=0.540 Sum_probs=9.5
Q ss_pred CcccccccCCC
Q 012382 1 MVDLDCKTKMP 11 (465)
Q Consensus 1 mvdl~w~~km~ 11 (465)
.||++||-+|+
T Consensus 22 LvDm~WKlgva 32 (86)
T cd04754 22 LVDFKWKLGMA 32 (86)
T ss_pred eEeeeeeEeEE
Confidence 48999999994
No 20
>PF14935 TMEM138: Transmembrane protein 138
Probab=26.52 E-value=63 Score=29.56 Aligned_cols=45 Identities=31% Similarity=0.538 Sum_probs=34.7
Q ss_pred HHHhhcCCCCCCCccccchhhhhhhHHHHHHHHHHH-----------hcCCCcccchhHHHHH
Q 012382 56 LRKLWSSRDFPNWENEAVLKPALQALEITFRFVSIV-----------LSDPRPYANRREFKRR 107 (465)
Q Consensus 56 Lr~LW~s~~fP~W~nE~i~kPAL~aLEitFR~is~v-----------lsD~RpYinrrEw~Rr 107 (465)
++.-|+.+.--.|. ++|+|+=+-=|+.|.. ++|||=|-+.. |.|+
T Consensus 63 l~~rw~~~~~~iW~------~gl~alfv~qR~~av~YYy~yKRtal~l~DPrfy~ds~-Wlr~ 118 (120)
T PF14935_consen 63 LNLRWGDPNRFIWT------DGLQALFVFQRLAAVLYYYFYKRTALRLGDPRFYEDSL-WLRE 118 (120)
T ss_pred eeeecCCCCCceeC------cHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCchH-HHHh
Confidence 34456655555565 7899999999997754 79999998877 9986
No 21
>PF15036 IL34: Interleukin 34; PDB: 4DKF_A 4DKE_A 4DKC_A 4DKD_A 4EXN_A 4EXP_A.
Probab=25.93 E-value=65 Score=31.08 Aligned_cols=62 Identities=18% Similarity=0.383 Sum_probs=42.7
Q ss_pred cccccccCccccccccCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHHHHH
Q 012382 217 LEYDAVCKPHELHSLKKNPYDHQINNHENQTLYTAHQILESWIFTTQQLLKRIVSRIESKQFEEASNDCYLLERIWKLLS 296 (465)
Q Consensus 217 L~YD~vckP~evh~lk~t~~d~~~~n~En~tl~t~HQI~EsWi~va~~lL~ri~~~ie~~~~e~AA~dc~~vERIWKlL~ 296 (465)
..|..|-|+.-|-.|....-.+ ..|. .=|..|+.+-+++|++-.-+|.. =||+|.
T Consensus 44 VpYE~VlR~aNitrLq~a~Vs~-------~~Lr------yLW~~Vsl~a~e~Vq~VLle~HP------------SwkYl~ 98 (169)
T PF15036_consen 44 VPYEGVLRLANITRLQRARVSE-------RELR------YLWVLVSLSATESVQEVLLEGHP------------SWKYLQ 98 (169)
T ss_dssp EEGGG---HHHHHHHHCTT--H-------HHHH------HHHHHHHHHHHHHHHTTS-TTST------------THHHHH
T ss_pred ccHHHhhhHhhhhHHHhcccCH-------HHHH------HHHHHhhHHHHHHHHHHHhccCC------------cHHHHH
Confidence 4688888888888874433311 1222 34999999999999999988887 399999
Q ss_pred HHHHhhh
Q 012382 297 EIEDLHL 303 (465)
Q Consensus 297 eieDLhl 303 (465)
|+++|+.
T Consensus 99 Ev~~Ll~ 105 (169)
T PF15036_consen 99 EVQTLLL 105 (169)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999863
No 22
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=25.42 E-value=63 Score=23.44 Aligned_cols=22 Identities=27% Similarity=0.101 Sum_probs=18.8
Q ss_pred HHHHHHHHHhhcchhhhhhhHH
Q 012382 265 LLKRIVSRIESKQFEEASNDCY 286 (465)
Q Consensus 265 lL~ri~~~ie~~~~e~AA~dc~ 286 (465)
...+|.+.|..|+|++|-+-|-
T Consensus 4 ~~~~i~~~i~~g~~~~a~~~~~ 25 (58)
T smart00668 4 ERKRIRELILKGDWDEALEWLS 25 (58)
T ss_pred HHHHHHHHHHcCCHHHHHHHHH
Confidence 4578999999999999988773
No 23
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=24.35 E-value=42 Score=28.68 Aligned_cols=16 Identities=38% Similarity=0.864 Sum_probs=13.9
Q ss_pred hcCChhHHHhhhhhhc
Q 012382 303 LLMDPDDFLRLKNQLS 318 (465)
Q Consensus 303 l~MDPdDFLrLK~qL~ 318 (465)
.+||||||-.+++.|.
T Consensus 10 v~v~~~dfne~~kRLd 25 (75)
T COG4064 10 VVVDPDDFNEIHKRLD 25 (75)
T ss_pred cccCHHHHHHHHHHHH
Confidence 5799999999998775
No 24
>PF14965 BRI3BP: Negative regulator of p53/TP53
Probab=22.73 E-value=3e+02 Score=26.90 Aligned_cols=49 Identities=33% Similarity=0.451 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHHHHHHH
Q 012382 246 QTLYTAHQILESWI-----FTTQQLLKRIVSRIESKQFEEASNDCYLLERIWKLLSEI 298 (465)
Q Consensus 246 ~tl~t~HQI~EsWi-----~va~~lL~ri~~~ie~~~~e~AA~dc~~vERIWKlL~ei 298 (465)
++-+++||-+|+|+ +++.+-|.++.+++-.| .+.-|-.+-|||--|-++
T Consensus 3 ~~~~~~~~tl~s~~G~e~v~~~~efls~~~~~~~~g----is~~l~~l~~i~~dlL~~ 56 (177)
T PF14965_consen 3 QAGRSVYQTLESWLGEENVRAVAEFLSRVTWRFSSG----ISSALNTLWRIWTDLLDV 56 (177)
T ss_pred hHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 46689999999996 77888888888887644 667788888888755444
No 25
>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.
Probab=22.25 E-value=1e+02 Score=22.02 Aligned_cols=22 Identities=23% Similarity=0.504 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHhhcchhhhhh
Q 012382 262 TQQLLKRIVSRIESKQFEEASN 283 (465)
Q Consensus 262 a~~lL~ri~~~ie~~~~e~AA~ 283 (465)
-..|-+...+++++.+||+||.
T Consensus 4 i~~l~~~m~~a~~~~dfE~Aa~ 25 (36)
T PF02151_consen 4 IKELEEKMEEAVENEDFEKAAR 25 (36)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHH
T ss_pred HHHHHHHHHHHHHHcCHHHHHH
Confidence 3566778899999999999984
No 26
>PF01231 IDO: Indoleamine 2,3-dioxygenase; InterPro: IPR000898 Indoleamine 2,3-dioxgyenase (IDO, 1.13.11.42 from EC) [] is a cytosolic haem protein which, together with the hepatic enzyme tryptophan 2,3-dioxygenase, catalyzes the conversion of tryptophan and other indole derivatives to kynurenines. The physiological role of IDO is not fully understood but is of great interest, because IDO is widely distributed in human tissues, can be up-regulated via cytokines such as interferon-gamma, and can thereby modulate the levels of tryptophan, which is vital for cell growth. The degradative action of IDO on tryptophan leads to cell death by starvation of this essential and relatively scarce amino acid. IDO is a haem-containing enzyme of about 400 amino acids. Site-directed mutagenesis showed His346 (P14902 from SWISSPROT) to be essential for haem binding, indicating that this histidine residue may be the proximal ligand. Mutation of Asp274 also compromised the ability of IDO to bind haem, suggesting that Asp274 may coordinate to haem directly as the distal ligand or is essential in maintaining the conformation of the haem pocket []. Other proteins that are evolutionarily related to IDO include yeast hypothetical protein YJR078w; and myoglobin from the red muscle of the archaeogastropodic molluscs, Nordotis madaka (Giant abalone) and Sulculus diversicolor [, ]. These unusual globins lack enzymatic activity but have kept the haem group.; GO: 0020037 heme binding; PDB: 2D0U_A 2D0T_A.
Probab=22.21 E-value=9.6e+02 Score=25.48 Aligned_cols=171 Identities=18% Similarity=0.163 Sum_probs=86.2
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhHHHH-HHHHHHHHHHHHhhhcCChhHH-Hhhhhhhcc
Q 012382 242 NHENQTLYTAHQILESWIFTTQQLLKRIVSRIESKQFEEASNDCYLL-ERIWKLLSEIEDLHLLMDPDDF-LRLKNQLSI 319 (465)
Q Consensus 242 n~En~tl~t~HQI~EsWi~va~~lL~ri~~~ie~~~~e~AA~dc~~v-ERIWKlL~eieDLhl~MDPdDF-LrLK~qL~i 319 (465)
.....-++.+|--+|.=.--+-..+.++.+.+..+|-....+.-..+ +.|-++-.-.+.++-.+||+.| -+++-=|+.
T Consensus 152 ~~dE~wF~lvsv~iE~~g~~~l~~~~~a~~a~~~~d~~~i~~~L~~i~~~i~~i~~~l~rm~e~~dp~~FY~~iRpfl~G 231 (422)
T PF01231_consen 152 TSDEEWFYLVSVEIEARGAPALPAMLSALDAVKAGDSDRITEALRRIAEAIERITALLERMYERCDPHVFYHRIRPFLAG 231 (422)
T ss_dssp TS-HHHHHHHHHHHHHHHHHHHTTHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHTTHHHH--HHHHHHTHHHHT--
T ss_pred CchhhhHHHhHHHHHHhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhheehhhhhhhc
Confidence 34445588888888876666666666777777777764444433333 3333333334556778899995 667666664
Q ss_pred ccC------CCCCCccccc---chhhHHhhhhHHhhhhccceeeecccCCCChHHH----------H---HHHHHhhhcc
Q 012382 320 SSS------SESGPFCFRS---RGLFEITKQSKELKHNVPLILGVEVDPRGGPRVQ----------E---AAMRMYNEKK 377 (465)
Q Consensus 320 ~s~------~~~~~fCfRS---r~L~evtk~ckdLrh~VP~iLgVEvDP~GGPr~Q----------E---AaM~lY~~~~ 377 (465)
... +....|==.+ +++.=.+..=--|-|-.=.+|||+=-|.|+.+.. . .-|+-|--+.
T Consensus 232 ~~~~~~~glp~Gv~yeg~~~~~~~~~G~S~aQSsli~~lD~~LGV~H~~~~~~~~~~~~~~~~~~~~~fl~~mr~YMP~~ 311 (422)
T PF01231_consen 232 WKNMPAAGLPNGVIYEGVSGEPRKYSGGSAAQSSLIQALDAFLGVDHSPTGQRKSPAPSSSSKDPETAFLEEMRRYMPPP 311 (422)
T ss_dssp BSS-GG--GTT-BEETTT-SS-B-B----GGG-HHHHHHHHHTT--TT-SS------------SHHHHHHHHHGGGS-HH
T ss_pred cCCCccccCCCCeeeeCCCCCcCcccCcCcccccHHHHHHHHhCCCCCCCCccccccccccccchHHHHHHHHHhcCCHH
Confidence 443 1111110001 1222222222334455567899998887753211 1 1233332110
Q ss_pred ------------------ccCcchHHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 012382 378 ------------------ERDFAKIHLVQALQAVEAALKRFFYAYKQLLAVVM 412 (465)
Q Consensus 378 ------------------~~~~~KihLLQa~QAVE~a~krFfy~YkQlv~~vm 412 (465)
..+...-.|..|++++=.|||.|==.|.|+|+--|
T Consensus 312 HR~FL~~l~~~~~iR~~v~~~~~~~~l~~aYn~~v~aL~~fR~~H~~iv~~YI 364 (422)
T PF01231_consen 312 HRRFLEHLESPPSIRSFVLSSGDDSELREAYNACVDALKEFRDAHIQIVTRYI 364 (422)
T ss_dssp HHHHHHHHHTS--HHHHHHTTT-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccCChHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00111127999999999999999999999998654
No 27
>COG0400 Predicted esterase [General function prediction only]
Probab=22.13 E-value=11 Score=35.96 Aligned_cols=61 Identities=21% Similarity=0.122 Sum_probs=50.2
Q ss_pred CCCCCCCCccc----ccccccCccccccccCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 012382 207 GEPNLAGKPNL----EYDAVCKPHELHSLKKNPYDHQINNHENQTLYTAHQILESWIFTTQQLLKR 268 (465)
Q Consensus 207 GEpNLaGKp~L----~YD~vckP~evh~lk~t~~d~~~~n~En~tl~t~HQI~EsWi~va~~lL~r 268 (465)
..||++++|+| ..|-||-+.+--++++...+. --+.|.+++..-|+|-+-|+..+++-|.+
T Consensus 140 ~~~~~~~~pill~hG~~Dpvvp~~~~~~l~~~l~~~-g~~v~~~~~~~GH~i~~e~~~~~~~wl~~ 204 (207)
T COG0400 140 LLPDLAGTPILLSHGTEDPVVPLALAEALAEYLTAS-GADVEVRWHEGGHEIPPEELEAARSWLAN 204 (207)
T ss_pred cccccCCCeEEEeccCcCCccCHHHHHHHHHHHHHc-CCCEEEEEecCCCcCCHHHHHHHHHHHHh
Confidence 46789999998 689999999888888776653 45777888888999999999999987654
No 28
>PRK06740 histidinol-phosphatase; Validated
Probab=21.60 E-value=3.1e+02 Score=27.90 Aligned_cols=31 Identities=35% Similarity=0.370 Sum_probs=22.9
Q ss_pred ccccchhhHHhhhhHHhhhhcc-----ceeeecccC
Q 012382 329 CFRSRGLFEITKQSKELKHNVP-----LILGVEVDP 359 (465)
Q Consensus 329 CfRSr~L~evtk~ckdLrh~VP-----~iLgVEvDP 359 (465)
|+.-.++-+-.+..+.||.+-+ -.+|+|+|=
T Consensus 115 ~m~~~~l~~Y~~ei~~LkekY~~~~I~Il~GlE~dy 150 (331)
T PRK06740 115 QVRVASLDDFTKAIEEAKERWSKRGVTLKLGIEADY 150 (331)
T ss_pred hhhhhhHHHHHHHHHHHHHHhccCCCeEEEEEEecc
Confidence 4444567777788888888765 378999983
No 29
>PF01410 COLFI: Fibrillar collagen C-terminal domain; InterPro: IPR000885 Collagens contain a large number of globular domains in between the regions of triple helical repeats IPR008160 from INTERPRO. These domains are involved in binding diverse substrates. One of these domains is found at the C terminus of fibrillar collagens. The exact function of this domain is unknown.; GO: 0005201 extracellular matrix structural constituent, 0005581 collagen
Probab=20.93 E-value=56 Score=31.23 Aligned_cols=28 Identities=29% Similarity=0.509 Sum_probs=21.3
Q ss_pred HHhhhhHHhhhhccceeeec--ccCCCChH
Q 012382 337 EITKQSKELKHNVPLILGVE--VDPRGGPR 364 (465)
Q Consensus 337 evtk~ckdLrh~VP~iLgVE--vDP~GGPr 364 (465)
.+++.|+||+..-|..-.=+ +||+||-.
T Consensus 10 ~PArtC~dL~~~~p~~~dG~YwIDPN~G~~ 39 (214)
T PF01410_consen 10 NPARTCRDLKLCHPELPDGEYWIDPNGGSP 39 (214)
T ss_pred chhhhHHHHHhhCcccCCCcEeECCCCCCC
Confidence 47899999999988754222 49999954
No 30
>PF01736 Polyoma_agno: Polyomavirus agnoprotein; InterPro: IPR002643 This family consists of the DNA-binding protein or agnoprotein from various polyomaviruses. This protein is highly basic and can bind single stranded and double stranded DNA []. Mutations in the agnoprotein produce smaller viral plaques, hence its function is not essential for growth in tissue culture cells but something has slowed in the normal replication cycle []. There is also evidence suggesting that the agnogene and agnoprotein act as regulators of structural protein synthesis [].; GO: 0003677 DNA binding
Probab=20.80 E-value=82 Score=26.02 Aligned_cols=33 Identities=36% Similarity=0.773 Sum_probs=28.6
Q ss_pred hhhhccHHHHHHHH-HHhhhhcccccccccCCCCCCCCC
Q 012382 177 ATWQKSEDAADKIM-YIIECEMRGCRYTLGLGEPNLAGK 214 (465)
Q Consensus 177 atW~~s~~va~ki~-~~IE~~M~rc~yTLGLGEpNLaGK 214 (465)
.||-.++.-||||+ |.+|--+.+|+ ||-.+.||
T Consensus 16 ktWtgtKkrAQRifiFiLElLL~FC~-----GedsvdGK 49 (62)
T PF01736_consen 16 KTWTGTKKRAQRIFIFILELLLEFCR-----GEDSVDGK 49 (62)
T ss_pred cccccchHHHHHHHHHHHHHHHHHhc-----CCcccccc
Confidence 58999999999996 66788888997 89999987
No 31
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=20.69 E-value=58 Score=30.87 Aligned_cols=63 Identities=27% Similarity=0.354 Sum_probs=40.4
Q ss_pred cCChhHHHhhhhhhccccCCCCCCcccccchhhH---HhhhhHHhhhhccceeeecc--cCCCChHHH
Q 012382 304 LMDPDDFLRLKNQLSISSSSESGPFCFRSRGLFE---ITKQSKELKHNVPLILGVEV--DPRGGPRVQ 366 (465)
Q Consensus 304 ~MDPdDFLrLK~qL~i~s~~~~~~fCfRSr~L~e---vtk~ckdLrh~VP~iLgVEv--DP~GGPr~Q 366 (465)
..++|||+-||.+|+|.-.-.+.--=-=.--.|| ++..-++|...-|.+.|+-| =|.|+|++-
T Consensus 55 ~~~~~d~~alK~~~gIp~e~~SCHT~VI~Gy~vEGHVPa~aI~~ll~~~pd~~GlavPgmp~gs~Gme 122 (149)
T COG3019 55 VVETDDFLALKRRLGIPYEMQSCHTAVINGYYVEGHVPAEAIARLLAEKPDAKGLAVPGMPVGSPGME 122 (149)
T ss_pred EeecCcHHHHHHhcCCChhhccccEEEEcCEEEeccCCHHHHHHHHhCCCCcceecCCCCcCCCCCcC
Confidence 4579999999999998643311100000001111 46677788888888888877 688888864
No 32
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=20.04 E-value=1.3e+02 Score=34.41 Aligned_cols=72 Identities=19% Similarity=0.322 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHHHHHHHHHhhhcCChhHHHhhhhhhccccCCCCCCc
Q 012382 249 YTAHQILESWIFTTQQLLKRIVSRIESKQFEEASNDCYLLERIWKLLSEIEDLHLLMDPDDFLRLKNQLSISSSSESGPF 328 (465)
Q Consensus 249 ~t~HQI~EsWi~va~~lL~ri~~~ie~~~~e~AA~dc~~vERIWKlL~eieDLhl~MDPdDFLrLK~qL~i~s~~~~~~f 328 (465)
.-.|-.==.|..+..+.- -..-|+|..|-++|..|||+.+-.++ |--||- .|
T Consensus 474 ~~L~~mqcmWf~~E~g~a-----y~r~~k~g~ALKkfh~i~k~~~~~~~--------dqfDfh---------------ty 525 (700)
T KOG1156|consen 474 NNLAEMQCMWFQLEDGEA-----YLRQNKLGLALKKFHEIEKHYKTWSE--------DQFDFH---------------TY 525 (700)
T ss_pred hhHHHhhhHHHhHhhhHH-----HHHHHHHHHHHHHHhhHHHHHHHHhh--------hhhhHH---------------HH
Confidence 334444445776655431 11228899999999999999986554 334443 79
Q ss_pred cccc---chhhHHhhhhHHhhhh
Q 012382 329 CFRS---RGLFEITKQSKELKHN 348 (465)
Q Consensus 329 CfRS---r~L~evtk~ckdLrh~ 348 (465)
|||- |.-|++.++|..||..
T Consensus 526 c~rk~tlrsYv~ll~~~d~L~~~ 548 (700)
T KOG1156|consen 526 CMRKGTLRSYVELLEWEDNLRSS 548 (700)
T ss_pred HHhcCcHHHHHHHHHHHHhhccC
Confidence 9998 7788999999999874
Done!