Query 012382
Match_columns 465
No_of_seqs 27 out of 29
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 08:21:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012382.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012382hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nw8_A Tryptophan 2,3-dioxygen 100.0 6.5E-34 2.2E-38 275.5 13.4 232 206-455 11-284 (306)
2 2nox_A Tryptophan 2,3-dioxygen 98.9 2.2E-08 7.5E-13 96.6 17.0 232 208-453 14-281 (281)
3 2d0t_A Indoleamine 2,3-dioxyge 98.1 9.8E-05 3.3E-09 73.9 16.4 161 242-413 160-358 (406)
4 2hsb_A Hypothetical UPF0332 pr 50.8 20 0.0007 28.7 4.7 40 254-293 4-44 (126)
5 1wol_A ST0689, 122AA long cons 47.4 39 0.0013 27.3 5.9 42 255-296 4-46 (122)
6 1ufb_A TT1696 protein; structu 38.8 40 0.0014 27.2 4.7 42 255-296 4-46 (127)
7 3o10_A Sacsin; all-helical dom 33.7 50 0.0017 28.1 4.7 41 255-295 9-50 (141)
8 3qt5_A Mevalonate diphosphate 32.5 1.1E+02 0.0039 28.9 7.4 42 253-304 209-251 (332)
9 4h51_A Aspartate aminotransfer 31.2 18 0.00062 35.4 1.8 55 334-390 31-96 (420)
10 3hho_A CO-chaperone protein HS 25.2 2.3E+02 0.008 24.8 7.7 52 247-301 117-168 (174)
11 3us6_A Histidine-containing ph 21.9 3.8E+02 0.013 23.0 8.8 61 250-310 41-112 (153)
12 2v7k_A PRNB; IDO, TDO, biosynt 20.5 4.5E+02 0.015 26.1 9.4 27 384-410 293-319 (361)
13 2hfs_A Mevalonate kinase, puta 20.1 4.9E+02 0.017 23.6 9.0 100 258-365 222-332 (332)
No 1
>2nw8_A Tryptophan 2,3-dioxygenase; all alpha-helical protein, structural genomics, PSI-2, prote structure initiative; HET: TRP HEM; 1.60A {Xanthomonas campestris PV} SCOP: a.266.1.1 PDB: 2nw7_A* 2nw9_A* 3bk9_A* 3e08_A* 1yw0_A
Probab=100.00 E-value=6.5e-34 Score=275.46 Aligned_cols=232 Identities=15% Similarity=0.180 Sum_probs=198.2
Q ss_pred CCCCCCCCCcccccccccCccccccccCCCCcccccCCCchHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhh
Q 012382 206 LGEPNLAGKPNLEYDAVCKPHELHSLKKNPYDHQINNHENQTLY-TAHQILESWIFTTQQLLKRIVSRIESKQFEEASND 284 (465)
Q Consensus 206 LGEpNLaGKp~L~YD~vckP~evh~lk~t~~d~~~~n~En~tl~-t~HQI~EsWi~va~~lL~ri~~~ie~~~~e~AA~d 284 (465)
=|+||+++++.+.|+..|++.+|++|.+.+++. .+.|+.|+ ++|||.|.|...+..-|+++.+++.++++..|.+.
T Consensus 11 ~~~~~l~~~~~l~Y~dYl~ld~LLslQ~p~s~~---~~hDE~lFIi~HQ~~ELWfKlil~EL~~a~~~l~~~~l~~a~~~ 87 (306)
T 2nw8_A 11 EPGIHTDLEGRLTYGGYLRLDQLLSAQQPLSEP---AHHDEMLFIIQHQTSELWLKLLAHELRAAIVHLQRDEVWQCRKV 87 (306)
T ss_dssp --------CCTTSHHHHTTHHHHTTCCCCCCSS---CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCCCcCCCCCCCHHHHhhHHHHHhcCCCCCCC---CCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 379999999999999999999999998877764 25677777 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCChhHHHhhhhhhccccCCCCCCcccccchhhHHhhhhHHhh--hh-----ccceeeecc
Q 012382 285 CYLLERIWKLLSEIEDLHLLMDPDDFLRLKNQLSISSSSESGPFCFRSRGLFEITKQSKELK--HN-----VPLILGVEV 357 (465)
Q Consensus 285 c~~vERIWKlL~eieDLhl~MDPdDFLrLK~qL~i~s~~~~~~fCfRSr~L~evtk~ckdLr--h~-----VP~iLgVEv 357 (465)
|.-|.||||+|.+..|++--|+|+||++++..|+..|+. -|-+.++|..+|.+.. ++ +|++.+...
T Consensus 88 L~Rv~ri~~~L~~~~~vL~tMtP~dF~~FR~~Lg~aSGF-------QS~qyR~iE~~lG~k~~~~l~~~~~~p~~~~~l~ 160 (306)
T 2nw8_A 88 LARSKQVLRQLTEQWSVLETLTPSEYMGFRDVLGPSSGF-------QSLQYRYIEFLLGNKNPQMLQVFAYDPAGQARLR 160 (306)
T ss_dssp HHHHHHHHHHHHHTHHHHTTCCHHHHTTTGGGSCSCCGG-------GCHHHHHHHHHHTCCCGGGGSTTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCccc-------ccHHHHHHHHHhCCCcHhhhcccccCHHHHHHHH
Confidence 999999999999999999999999999999999987754 4555577777777666 44 888888877
Q ss_pred cCCCC----------------------------------hHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHHh
Q 012382 358 DPRGG----------------------------------PRVQEAAMRMYNEKKERDFAKIHLVQALQAVEAALKRFFYA 403 (465)
Q Consensus 358 DP~GG----------------------------------Pr~QEAaM~lY~~~~~~~~~KihLLQa~QAVE~a~krFfy~ 403 (465)
++.+| |++|+|.|++|..+.+ ..+..+|+++|++||.++++|.|+
T Consensus 161 ~~~~~pSL~d~~~~~L~r~G~~~~~~~l~rd~~~~y~~~~~v~~~~~~vY~~~~~-~~~~~~L~eaL~did~~~~~WR~~ 239 (306)
T 2nw8_A 161 EVLEAPSLYEEFLRYLARFGHAIPQQYQARDWTAAHVADDTLRPVFERIYENTDR-YWREYSLCEDLVDVETQFQLWRFR 239 (306)
T ss_dssp HHHTSCCHHHHHHHHHHHTTCCCCGGGGSCCTTSCCCCCGGGHHHHHHHHHCTTT-THHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHcCCCcchhhhhhhhhhccCCCHHHHHHHHHHhcCCcc-cccHHHHHHHHHHHHHHHHHHHHH
Confidence 77777 6778888999988765 467899999999999999999999
Q ss_pred HHHHHHHhhcccccccceeeeecCCcchhhhhhccCCCCCCChhhHhhhhhh
Q 012382 404 YKQLLAVVMGSLEAKANGVVVVSGASSDSLSQLFLEPTYYPSLDAAKTFLGE 455 (465)
Q Consensus 404 YkQlv~~vmGS~Ea~gn~~~~vs~~~~d~Lsq~flEP~yFPSLDaAKTFLG~ 455 (465)
|.++|.-|||+....|. +++.+-|.+++ +++|||+|..+|||||+
T Consensus 240 H~~~v~R~IG~k~GTGG------SsG~~yL~~~~-~~~~FPeLw~~rt~L~~ 284 (306)
T 2nw8_A 240 HMRTVMRVIGFKRGTGG------SSGVGFLQQAL-ALTFFPELFDVRTSVGV 284 (306)
T ss_dssp HHHHHHHHHTTCCCSSS------SCTHHHHHHHT-TCCSCHHHHHGGGTTTC
T ss_pred HHHHHHHHhCCCCCCCC------cchHHHHHHhc-CCCcCHHHHHHHhhccc
Confidence 99999999999765443 44679999986 89999999999999998
No 2
>2nox_A Tryptophan 2,3-dioxygenase; helical bundle, heme protein, oxidoreductase; HET: HEM; 2.40A {Cupriavidus metallidurans}
Probab=98.95 E-value=2.2e-08 Score=96.61 Aligned_cols=232 Identities=16% Similarity=0.249 Sum_probs=164.5
Q ss_pred CCCCCCCcccccccccCccccccccCCCCcccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhHHH
Q 012382 208 EPNLAGKPNLEYDAVCKPHELHSLKKNPYDHQINNHENQTLYTAHQILESWIFTTQQLLKRIVSRIESKQFEEASNDCYL 287 (465)
Q Consensus 208 EpNLaGKp~L~YD~vckP~evh~lk~t~~d~~~~n~En~tl~t~HQI~EsWi~va~~lL~ri~~~ie~~~~e~AA~dc~~ 287 (465)
+|.+...+.+.|..-.+-.+|++|-+...+ .|.-+.+-.+||+.|-|.....-=|+.+.+.+.+++...|.+.=--
T Consensus 14 ~~~~~~~~~~~Y~dYl~ld~LLslQ~p~s~----~hDE~lFIv~HQ~~ELwfKlil~El~~a~~~l~~~~~~~a~~~L~R 89 (281)
T 2nox_A 14 GAQMDFARDMSYGDYLGLDQILSAQHPLSP----DHNEMLFIVQHQTTELWMKLMLHELRAARDGVKSDQLQPAFKMLAR 89 (281)
T ss_dssp -------CCCCHHHHHTHHHHTTCCCCCSS----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHhHHHHHhcCCCCCC----CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 788888999999999999999999776663 3555667789999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHhhhcCChhHHHhhhhhhccccCCCCCCccccc---------chhhHHhh----hhHHhhh--hccce
Q 012382 288 LERIWKLLSEIEDLHLLMDPDDFLRLKNQLSISSSSESGPFCFRS---------RGLFEITK----QSKELKH--NVPLI 352 (465)
Q Consensus 288 vERIWKlL~eieDLhl~MDPdDFLrLK~qL~i~s~~~~~~fCfRS---------r~L~evtk----~ckdLrh--~VP~i 352 (465)
|-||.+.|.+.-|++-=|+|.||+..+.-|+-.|+..+.. ||- ..++.+-+ .-+.|+. .-|.+
T Consensus 90 v~~i~~~L~~~~~vL~tMtp~dF~~FR~~Lg~aSGFQS~q--yR~iE~~lG~k~~~~l~~~~~~p~~~~~l~~~~~~pSL 167 (281)
T 2nox_A 90 VSRIMDQLVQAWNVLATMTPPEYSAMRPYLGASSGFQSYQ--YREIEFILGNKNAAMLRPHAHRPEHLELVETALHTPSM 167 (281)
T ss_dssp HHHHHHHHHHTHHHHTTCCHHHHHHHGGGTTTCCGGGCHH--HHHHHHHTTCCCGGGGGGGTTCHHHHHHHHHHHHSCCH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCcchhhHHH--HHHHHHHhCCCcHHHhcccccCHHHHHHHHHHhcCCCH
Confidence 8999999999999999999999999999999666553222 221 00111000 0000000 00111
Q ss_pred e----------eecc-----------cCCCChHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Q 012382 353 L----------GVEV-----------DPRGGPRVQEAAMRMYNEKKERDFAKIHLVQALQAVEAALKRFFYAYKQLLAVV 411 (465)
Q Consensus 353 L----------gVEv-----------DP~GGPr~QEAaM~lY~~~~~~~~~KihLLQa~QAVE~a~krFfy~YkQlv~~v 411 (465)
. |..+ -=...|.++++-.++|..+.. ..+--.|+.+|-.++.++.++=|+|-..|.-|
T Consensus 168 ~d~~~~~L~r~G~~~~~~~l~rd~~~~y~~~~~v~~~~~~vy~~~~~-~~~~~~L~e~L~d~d~~~~~WR~~H~~~v~R~ 246 (281)
T 2nox_A 168 YDEAIRLMARRGFQIDPEVVERDWTQPTQYNASVEAAWLEVYRNPSA-HWELYELGEKFVDLEDAFRQWRFRHVTTVERV 246 (281)
T ss_dssp HHHHHHHHHHTTCCCCHHHHSCCTTSCCCCCHHHHHHHHHHHHSGGG-GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCchhhhhhhhhhccCccHHHHHHHHHHhcCccc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 1111 113445677777778877654 33456789999999999999999999999999
Q ss_pred hcccccccceeeeecCCcchhhhhhccCCCCCCChhhHhhhh
Q 012382 412 MGSLEAKANGVVVVSGASSDSLSQLFLEPTYYPSLDAAKTFL 453 (465)
Q Consensus 412 mGS~Ea~gn~~~~vs~~~~d~Lsq~flEP~yFPSLDaAKTFL 453 (465)
||+. .||.- +++.+=|... ++-++||.|=.++|+|
T Consensus 247 IG~k--~GTGG----SsG~~yL~~~-~~~~~FPeLw~~rt~l 281 (281)
T 2nox_A 247 IGFK--RGTGG----TEGVSYLRRM-LDVVLFPELWKLRTDL 281 (281)
T ss_dssp HTTC--CCTTS----SCTHHHHHHH-TTCCSSHHHHHHHHHC
T ss_pred hCCC--CCCCC----CchHHHHHHh-ccCCcCHHHHHHhccC
Confidence 9984 35422 2255778886 4678999999999986
No 3
>2d0t_A Indoleamine 2,3-dioxygenase; helix bundle, riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: HEM PIM NHE; 2.30A {Homo sapiens} SCOP: a.266.1.2 PDB: 2d0u_A*
Probab=98.07 E-value=9.8e-05 Score=73.94 Aligned_cols=161 Identities=15% Similarity=0.156 Sum_probs=113.1
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHHHHHHHHH-hhhcCChhHH-Hhhhhhhcc
Q 012382 242 NHENQTLYTAHQILESWIFTTQQLLKRIVSRIESKQFEEASNDCYLLERIWKLLSEIED-LHLLMDPDDF-LRLKNQLSI 319 (465)
Q Consensus 242 n~En~tl~t~HQI~EsWi~va~~lL~ri~~~ie~~~~e~AA~dc~~vERIWKlL~eieD-Lhl~MDPdDF-LrLK~qL~i 319 (465)
.+...-++.+||-+|.|.-.+-..+..+.++++.++.+.+.+-..-+-++.+-|.++.+ ++--|||.+| .+++--|+.
T Consensus 160 ~~dE~~Filv~~~~El~~~~~l~~~~~A~~a~~~~d~~~~~~~L~ri~~~l~~l~~~l~~m~e~~~P~~fy~~iRp~L~g 239 (406)
T 2d0t_A 160 GDCSKGFFLVSLLVEIAAASAIKVIPTVFKAMQMQERDTLLKALLEIASCLEKALQVFHQIHDHVNPKAFFSVLRIYLSG 239 (406)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTTHHHHCCHHHHHHTHHHHTCC
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHhccccccc
Confidence 34445577999999999999999999999999999999888888888888887777776 4888999999 999999985
Q ss_pred ccCC------------CCCCccc------ccchhhHHhhhhHHhhhhccceeeecccCCCChH-HHHHHHHHh-------
Q 012382 320 SSSS------------ESGPFCF------RSRGLFEITKQSKELKHNVPLILGVEVDPRGGPR-VQEAAMRMY------- 373 (465)
Q Consensus 320 ~s~~------------~~~~fCf------RSr~L~evtk~ckdLrh~VP~iLgVEvDP~GGPr-~QEAaM~lY------- 373 (465)
.... +..+.-| =|.. + |..=.+|||+--++||.. ---+-|+-|
T Consensus 240 ~~~~~~~p~G~~yeGv~~~p~~~~G~Sg~QSsl-~----------~~lD~~LGi~~~~~~~~~~~fl~~mr~ymP~~hr~ 308 (406)
T 2d0t_A 240 WKGNPQLSDGLVYEGFWEDPKEFAGGSAGQSSV-F----------QCFDVLLGIQQTAGGGHAAQFLQDMRRYMPPAHRN 308 (406)
T ss_dssp BSSCGGGTTCBEETTTCSSCBCBCCCCGGGCHH-H----------HHHHHHTTCCSSCSSSHHHHHHHHHGGGSCHHHHH
T ss_pred cccccCCCCCeeeeccCCcccccCCCchhhhhH-H----------HHHHHHhCCCCccccCChHHHHHHHHhhCCchHHH
Confidence 3311 0011111 2211 1 112346888877777732 001123333
Q ss_pred -----hhccc-----cCcchHHHHHHHHHHHHHHHHHHHhHHHHHHHhhc
Q 012382 374 -----NEKKE-----RDFAKIHLVQALQAVEAALKRFFYAYKQLLAVVMG 413 (465)
Q Consensus 374 -----~~~~~-----~~~~KihLLQa~QAVE~a~krFfy~YkQlv~~vmG 413 (465)
..... ...+...|..|+.+++.++++|=+.|-|+|.-.||
T Consensus 309 fL~~l~~~~~vr~~v~~~~~~~L~ea~~~~~~~l~~fR~~Hi~~V~ryI~ 358 (406)
T 2d0t_A 309 FLCSLESNPSVREFVLSKGDAGLREAYDACVKALVSLRSYHLQIVTKYIL 358 (406)
T ss_dssp HHHHHHTSCCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHhcCCccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11100 00123478999999999999999999999999999
No 4
>2hsb_A Hypothetical UPF0332 protein AF0298; DUF103 family, structural genomics, joint center for structu genomics, JCSG; HET: MSE PG4; 1.95A {Archaeoglobus fulgidus}
Probab=50.77 E-value=20 Score=28.71 Aligned_cols=40 Identities=20% Similarity=0.240 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhhhhhhHHH-HHHHHH
Q 012382 254 ILESWIFTTQQLLKRIVSRIESKQFEEASNDCYL-LERIWK 293 (465)
Q Consensus 254 I~EsWi~va~~lL~ri~~~ie~~~~e~AA~dc~~-vERIWK 293 (465)
.++.|+.-|..-|+......+.|.+.-|+..||. ++-..|
T Consensus 4 ~~~~~l~~A~~~L~~A~~~~~~g~y~~a~~~ay~a~~~alK 44 (126)
T 2hsb_A 4 ELELRIRKAEKLVQDAKKEFEMGLYERCCSTAYYAMFHAAK 44 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 3577999999999999999999999999998875 455444
No 5
>1wol_A ST0689, 122AA long conserved hypothetical protein; alpha helix, loop, unknown function; 1.62A {Sulfolobus tokodaii}
Probab=47.39 E-value=39 Score=27.31 Aligned_cols=42 Identities=21% Similarity=0.139 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcchhhhhhhHH-HHHHHHHHHH
Q 012382 255 LESWIFTTQQLLKRIVSRIESKQFEEASNDCY-LLERIWKLLS 296 (465)
Q Consensus 255 ~EsWi~va~~lL~ri~~~ie~~~~e~AA~dc~-~vERIWKlL~ 296 (465)
.+.|+.-|..-|+.....++.|.++.|+-.|+ .+|...|-|-
T Consensus 4 ~~~wl~~A~~dL~~A~~~~~~g~y~~a~f~aqQa~Ek~lKalL 46 (122)
T 1wol_A 4 VEDWIKQAERDLEEARYAKSGGYYELACFLSQQCAEKAVKGLL 46 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999999999996 5788888553
No 6
>1ufb_A TT1696 protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.90A {Thermus thermophilus} SCOP: a.24.16.3
Probab=38.80 E-value=40 Score=27.21 Aligned_cols=42 Identities=14% Similarity=0.145 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcchhhhhhhHHH-HHHHHHHHH
Q 012382 255 LESWIFTTQQLLKRIVSRIESKQFEEASNDCYL-LERIWKLLS 296 (465)
Q Consensus 255 ~EsWi~va~~lL~ri~~~ie~~~~e~AA~dc~~-vERIWKlL~ 296 (465)
.+.|+.-|..-|+.....++.|.++.|+-.|++ +|...|-+-
T Consensus 4 ~~~w~~~A~~~L~~A~~~~~~g~y~~a~f~a~qa~Ek~lKalL 46 (127)
T 1ufb_A 4 ARDWLEQARHNLRHAQGSLGLGDYAWACFAAQQAAEAALKGLH 46 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHH
Confidence 467999999999999999999999999999975 688877553
No 7
>3o10_A Sacsin; all-helical domain, homodimerization, chaperone; 1.90A {Homo sapiens}
Probab=33.67 E-value=50 Score=28.11 Aligned_cols=41 Identities=12% Similarity=0.195 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcchhhhhhhHHH-HHHHHHHH
Q 012382 255 LESWIFTTQQLLKRIVSRIESKQFEEASNDCYL-LERIWKLL 295 (465)
Q Consensus 255 ~EsWi~va~~lL~ri~~~ie~~~~e~AA~dc~~-vERIWKlL 295 (465)
.+.|+.-|..-|+.....++.|.++-|+-.|.+ +|+..|-+
T Consensus 9 ~~~wl~~A~~dl~~A~~~~~~g~y~~a~F~aqQA~Ek~lKa~ 50 (141)
T 3o10_A 9 ARRWLRQARANFSAARNDLHKNANEWVCFKCYLSTKLALIAA 50 (141)
T ss_dssp HHHHHHHHHHHHHHHGGGTTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHhhHHhhCccceEeeehhHHHHHHHHHH
Confidence 578999999999999999999999999999985 78888865
No 8
>3qt5_A Mevalonate diphosphate decarboxylase; GHMP kinase family, lyase; 1.85A {Staphylococcus epidermidis} PDB: 3qt6_A* 3qt7_A* 4dpt_A* 4du7_A* 4dpu_A* 3qt8_A* 4dpx_A 4dpy_A* 4du8_A* 4dpw_A* 2hk2_A 2hk3_A
Probab=32.48 E-value=1.1e+02 Score=28.92 Aligned_cols=42 Identities=12% Similarity=0.325 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHHHHH-HHHHhhhc
Q 012382 253 QILESWIFTTQQLLKRIVSRIESKQFEEASNDCYLLERIWKLLS-EIEDLHLL 304 (465)
Q Consensus 253 QI~EsWi~va~~lL~ri~~~ie~~~~e~AA~dc~~vERIWKlL~-eieDLhl~ 304 (465)
.-++.|++.+...+..+.+.+..|||+ .+-+++. +...||..
T Consensus 209 ~~~~~~v~~~~~~~~~l~~Al~~~D~~----------~l~~~~~~d~~~lh~~ 251 (332)
T 3qt5_A 209 RFYQYWLDHVDEDLNEAKEAVKNQDFQ----------RLGEVIEANGLRMHAT 251 (332)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHTCHH----------HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHHHHHHH
Confidence 345678887777899999999999985 3444444 44457764
No 9
>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}
Probab=31.24 E-value=18 Score=35.42 Aligned_cols=55 Identities=20% Similarity=0.280 Sum_probs=31.5
Q ss_pred hhhHHhhhhHHhhhhccce-eeecc--cCCCChH----HHHHHHHHhhhcc--cc--CcchHHHHHHH
Q 012382 334 GLFEITKQSKELKHNVPLI-LGVEV--DPRGGPR----VQEAAMRMYNEKK--ER--DFAKIHLVQAL 390 (465)
Q Consensus 334 ~L~evtk~ckdLrh~VP~i-LgVEv--DP~GGPr----~QEAaM~lY~~~~--~~--~~~KihLLQa~ 390 (465)
.++.+++..|+=++ |+| |||++ |+.|-|- +++|.-++..... +| -.|-..|.||.
T Consensus 31 ~i~~l~~~~~~d~~--~kinLgvG~y~d~~g~~~vl~~Vk~A~~~~~~~~~~~~Y~p~~G~p~lr~ai 96 (420)
T 4h51_A 31 VIFDLAKRAAAAKG--PKANLVIGAYRDEQGRPYPLRVVRKAEQLLLDMNLDYEYLPISGYQPFIDEA 96 (420)
T ss_dssp HHHHHHHHHHHCCS--SCEECCSCCCBCTTSCBCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHH
T ss_pred hHHHHHHHHhcCCC--CCEEeecCcccCCCCCCCCCHHHHHHHHHHhcCCCCCCCCCcCChHHHHHHH
Confidence 45566666554433 555 77776 9988864 6787766654332 22 12445555554
No 10
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=25.22 E-value=2.3e+02 Score=24.83 Aligned_cols=52 Identities=17% Similarity=0.248 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHHHHHHHHHh
Q 012382 247 TLYTAHQILESWIFTTQQLLKRIVSRIESKQFEEASNDCYLLERIWKLLSEIEDL 301 (465)
Q Consensus 247 tl~t~HQI~EsWi~va~~lL~ri~~~ie~~~~e~AA~dc~~vERIWKlL~eieDL 301 (465)
.|..+.+-++.-+ ..+++.+.+.++.++|+.|+..+.-+--+-|+..+|+.+
T Consensus 117 ~l~~l~~~~~~~~---~~~~~~l~~~~~~~d~~~A~~~~~kL~f~~kl~~~i~~~ 168 (174)
T 3hho_A 117 ALVAFDTKVTAMQ---RHYLAQLQGQLAQSEWLAAADQIRKLKFIAKLKNEVERV 168 (174)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555444 566778888899999999999998887777777777764
No 11
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=21.89 E-value=3.8e+02 Score=22.98 Aligned_cols=61 Identities=8% Similarity=0.194 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc--chhhhhhhHHHH---------HHHHHHHHHHHHhhhcCChhHH
Q 012382 250 TAHQILESWIFTTQQLLKRIVSRIESK--QFEEASNDCYLL---------ERIWKLLSEIEDLHLLMDPDDF 310 (465)
Q Consensus 250 t~HQI~EsWi~va~~lL~ri~~~ie~~--~~e~AA~dc~~v---------ERIWKlL~eieDLhl~MDPdDF 310 (465)
-+..+++..+.-+.+.|+.+.+.++.+ |++.+..-++.+ .|+-.+-.++|..---=|.++.
T Consensus 41 ~~~ell~~Fl~d~~~~l~~L~~al~~~~~D~~~l~~~aH~LKGss~~lGa~~l~~~c~~lE~~~~~~~~~~~ 112 (153)
T 3us6_A 41 FVFEVVSLFFDDSERILKDLSFAVDQQSIDFKKVDAHVHQFKGSSASIGAQRVKNSCVAFRNFCEEQNIDAC 112 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 356789999999999999999999999 898876665554 5666666666665544444433
No 12
>2v7k_A PRNB; IDO, TDO, biosynthetic protein; HET: HEM DTR; 1.70A {Pseudomonas fluorescens} PDB: 2v7j_A* 2v7i_A* 2v7l_A* 2v7m_A* 2x66_A* 2x67_A* 2x68_A*
Probab=20.47 E-value=4.5e+02 Score=26.11 Aligned_cols=27 Identities=26% Similarity=0.093 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 012382 384 IHLVQALQAVEAALKRFFYAYKQLLAV 410 (465)
Q Consensus 384 ihLLQa~QAVE~a~krFfy~YkQlv~~ 410 (465)
-.|+.|+.++=.++++|==.|.|+|.-
T Consensus 293 ~~l~~ay~~~v~~l~~fR~~H~~iV~~ 319 (361)
T 2v7k_A 293 RAGLTALERVFKVLLRFRAPHLKLAER 319 (361)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 679999999999999999999999966
No 13
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A*
Probab=20.13 E-value=4.9e+02 Score=23.58 Aligned_cols=100 Identities=10% Similarity=0.087 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHHHHHHHHHhhhcCChhHHHhhhhhh---c-----cccCCCC-CCc
Q 012382 258 WIFTTQQLLKRIVSRIESKQFEEASNDCYLLERIWKLLSEIEDLHLLMDPDDFLRLKNQL---S-----ISSSSES-GPF 328 (465)
Q Consensus 258 Wi~va~~lL~ri~~~ie~~~~e~AA~dc~~vERIWKlL~eieDLhl~MDPdDFLrLK~qL---~-----i~s~~~~-~~f 328 (465)
+...+..+...+.+.++.++++...+- +.+-|.+|... -...| .+-.+++.+ + |+.++.+ ..|
T Consensus 222 ~~~~~~~~~~~~~~al~~~d~~~l~~~---~~~~~~~l~~~----~~~~p-~l~~l~~~~~~~Ga~ga~~sGaG~gg~v~ 293 (332)
T 2hfs_A 222 LYDNYTHIVSQAREALQKGDLQRLGQL---MNANHDLCRQI----DVSCR-ELESIVQTCRTYGALGAKLSGTGRGGIAV 293 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHH---HHHHHHHHHHT----TCCCH-HHHHHHHHHHHTTCSEEEEESSCSSSEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHH---HHHHHHHHHHc----CCCCH-HHHHHHHHHHHcCCceEEeccCCCCcEEE
Confidence 455555666777788888888654332 33335555432 12334 233444332 1 2222221 344
Q ss_pred cc-ccch-hhHHhhhhHHhhhhccceeeecccCCCChHH
Q 012382 329 CF-RSRG-LFEITKQSKELKHNVPLILGVEVDPRGGPRV 365 (465)
Q Consensus 329 Cf-RSr~-L~evtk~ckdLrh~VP~iLgVEvDP~GGPr~ 365 (465)
++ ++.+ .-++.+..++.-.....+.-+.++|.+|-++
T Consensus 294 ~l~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~ 332 (332)
T 2hfs_A 294 ALAASSDQRDAIVKGLKAKCPEAKFIWRYTVQPSAASNL 332 (332)
T ss_dssp EEESSHHHHHHHHHHHHHHCTTCCEEEEEEECCSCC---
T ss_pred EEecCcccHHHHHHHHHHHHhcCCceEEEEeccCCCCCC
Confidence 43 3332 2344433333211122255578899999764
Done!