Query 012383
Match_columns 465
No_of_seqs 465 out of 2609
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 02:04:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012383.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012383hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00020 ribulose bisphosphate 100.0 1.1E-94 2.5E-99 733.3 32.9 406 3-412 5-412 (413)
2 KOG0651 26S proteasome regulat 100.0 6.7E-62 1.4E-66 479.6 9.9 363 5-409 14-387 (388)
3 COG1222 RPT1 ATP-dependent 26S 100.0 2.7E-47 5.9E-52 382.7 15.6 179 143-335 179-363 (406)
4 KOG0741 AAA+-type ATPase [Post 100.0 1.7E-45 3.6E-50 382.3 11.6 291 143-455 250-583 (744)
5 KOG0733 Nuclear AAA ATPase (VC 100.0 3.6E-44 7.8E-49 377.3 19.0 265 114-408 509-789 (802)
6 KOG0726 26S proteasome regulat 100.0 5.9E-43 1.3E-47 343.0 13.8 257 50-335 73-397 (440)
7 KOG0730 AAA+-type ATPase [Post 100.0 2.7E-42 5.9E-47 367.1 19.0 204 114-334 432-642 (693)
8 KOG0736 Peroxisome assembly fa 100.0 7.1E-42 1.5E-46 367.2 18.6 268 116-407 672-951 (953)
9 KOG0734 AAA+-type ATPase conta 100.0 1.7E-41 3.8E-46 352.7 11.1 246 144-414 332-593 (752)
10 KOG0733 Nuclear AAA ATPase (VC 100.0 1.5E-39 3.3E-44 342.5 20.7 206 132-353 205-417 (802)
11 KOG0731 AAA+-type ATPase conta 100.0 1.4E-37 3E-42 339.1 14.1 207 115-336 310-525 (774)
12 KOG0738 AAA+-type ATPase [Post 100.0 1E-36 2.2E-41 308.4 16.5 197 145-359 240-444 (491)
13 COG0465 HflB ATP-dependent Zn 100.0 5.4E-37 1.2E-41 329.2 14.4 256 145-414 179-442 (596)
14 KOG0735 AAA+-type ATPase [Post 100.0 1.4E-36 3E-41 324.1 17.2 199 144-362 696-900 (952)
15 KOG0727 26S proteasome regulat 100.0 6.6E-36 1.4E-40 288.9 14.1 179 142-334 182-366 (408)
16 KOG0728 26S proteasome regulat 100.0 2E-35 4.2E-40 285.4 15.0 178 143-334 175-358 (404)
17 KOG0652 26S proteasome regulat 100.0 1.3E-35 2.8E-40 288.0 12.2 179 142-334 198-382 (424)
18 KOG0729 26S proteasome regulat 100.0 2E-35 4.3E-40 287.4 11.4 178 143-334 205-388 (435)
19 KOG0739 AAA+-type ATPase [Post 100.0 7.8E-35 1.7E-39 286.6 10.9 204 115-336 132-342 (439)
20 COG0464 SpoVK ATPases of the A 100.0 1.1E-33 2.4E-38 302.2 20.5 176 144-336 271-454 (494)
21 CHL00195 ycf46 Ycf46; Provisio 100.0 5.7E-33 1.2E-37 296.0 22.0 174 144-335 254-435 (489)
22 TIGR03689 pup_AAA proteasome A 100.0 7.4E-33 1.6E-37 295.4 21.6 281 114-411 180-498 (512)
23 TIGR01243 CDC48 AAA family ATP 100.0 9.2E-33 2E-37 308.3 22.6 222 143-390 481-709 (733)
24 KOG0737 AAA+-type ATPase [Post 100.0 1.2E-32 2.7E-37 278.1 16.4 261 111-391 87-359 (386)
25 PTZ00454 26S protease regulato 100.0 4.5E-32 9.8E-37 283.0 17.8 208 114-335 143-357 (398)
26 CHL00206 ycf2 Ycf2; Provisiona 100.0 2.2E-32 4.7E-37 316.0 16.4 173 144-336 1625-1849(2281)
27 COG1223 Predicted ATPase (AAA+ 100.0 5.9E-32 1.3E-36 262.4 14.4 200 111-334 116-324 (368)
28 TIGR01241 FtsH_fam ATP-depende 100.0 4.4E-32 9.6E-37 290.4 14.8 207 112-336 51-267 (495)
29 PRK03992 proteasome-activating 100.0 2.2E-31 4.7E-36 277.4 18.4 180 142-335 158-343 (389)
30 CHL00176 ftsH cell division pr 100.0 1.4E-31 3.1E-36 293.1 15.4 180 143-336 210-395 (638)
31 KOG0730 AAA+-type ATPase [Post 100.0 4.5E-30 9.7E-35 274.1 17.2 275 143-450 212-508 (693)
32 PTZ00361 26 proteosome regulat 100.0 1.9E-30 4.1E-35 273.2 13.9 179 143-335 211-395 (438)
33 PRK10733 hflB ATP-dependent me 100.0 1.3E-29 2.8E-34 279.0 15.7 177 144-336 180-364 (644)
34 TIGR01242 26Sp45 26S proteasom 100.0 5.1E-29 1.1E-33 257.0 17.3 180 142-335 149-334 (364)
35 KOG0740 AAA+-type ATPase [Post 100.0 2E-29 4.3E-34 261.8 12.3 209 109-334 146-361 (428)
36 KOG0732 AAA+-type ATPase conta 100.0 2.8E-28 6E-33 272.5 16.4 209 111-336 260-481 (1080)
37 TIGR01243 CDC48 AAA family ATP 100.0 3.6E-27 7.8E-32 263.4 21.1 207 112-335 174-387 (733)
38 PF00004 AAA: ATPase family as 99.9 2.1E-23 4.5E-28 181.6 12.6 130 152-298 1-131 (132)
39 KOG0743 AAA+-type ATPase [Post 99.9 1E-21 2.2E-26 203.7 18.5 199 114-333 199-409 (457)
40 KOG0744 AAA+-type ATPase [Post 99.8 4.1E-20 9E-25 184.5 12.5 183 115-311 141-340 (423)
41 KOG0742 AAA+-type ATPase [Post 99.8 6.5E-19 1.4E-23 180.2 12.7 194 119-334 354-582 (630)
42 COG0466 Lon ATP-dependent Lon 99.8 3.8E-18 8.3E-23 184.6 12.6 148 150-313 351-510 (782)
43 KOG2004 Mitochondrial ATP-depe 99.7 1.8E-17 3.8E-22 178.9 15.6 168 128-313 419-598 (906)
44 TIGR02881 spore_V_K stage V sp 99.7 6.9E-17 1.5E-21 159.6 14.9 144 149-319 42-201 (261)
45 CHL00181 cbbX CbbX; Provisiona 99.7 5.4E-17 1.2E-21 163.1 14.3 145 149-319 59-219 (287)
46 TIGR00763 lon ATP-dependent pr 99.7 1.4E-16 2.9E-21 179.6 18.9 165 150-330 348-536 (775)
47 TIGR02880 cbbX_cfxQ probable R 99.7 1.5E-16 3.2E-21 159.7 16.4 172 117-314 23-211 (284)
48 COG0464 SpoVK ATPases of the A 99.7 3.3E-16 7.2E-21 167.8 18.5 175 143-336 12-192 (494)
49 KOG0735 AAA+-type ATPase [Post 99.7 2.3E-16 4.9E-21 170.2 15.9 176 147-336 429-616 (952)
50 KOG0736 Peroxisome assembly fa 99.7 2.7E-15 5.9E-20 163.1 18.6 175 145-336 427-605 (953)
51 TIGR02639 ClpA ATP-dependent C 99.6 1.6E-15 3.5E-20 169.9 14.5 164 149-337 203-399 (731)
52 PRK10787 DNA-binding ATP-depen 99.6 3.7E-14 8E-19 159.7 18.4 163 150-329 350-536 (784)
53 PF05496 RuvB_N: Holliday junc 99.6 5.1E-14 1.1E-18 136.2 13.7 143 148-317 49-198 (233)
54 PRK11034 clpA ATP-dependent Cl 99.5 5.3E-14 1.1E-18 157.6 14.7 139 149-312 207-363 (758)
55 PRK10865 protein disaggregatio 99.5 4.4E-14 9.5E-19 160.7 12.9 138 150-312 200-355 (857)
56 PRK00080 ruvB Holliday junctio 99.5 1.5E-13 3.2E-18 140.2 15.0 154 147-327 49-211 (328)
57 TIGR03345 VI_ClpV1 type VI sec 99.5 1.2E-13 2.6E-18 157.0 15.7 163 150-338 209-405 (852)
58 CHL00095 clpC Clp protease ATP 99.5 2.5E-13 5.3E-18 154.2 16.5 169 147-341 198-399 (821)
59 TIGR03346 chaperone_ClpB ATP-d 99.5 1.7E-13 3.8E-18 156.0 14.6 167 149-341 194-394 (852)
60 TIGR00635 ruvB Holliday juncti 99.5 3.6E-13 7.8E-18 135.1 14.5 153 147-326 28-189 (305)
61 PRK05342 clpX ATP-dependent pr 99.5 3.1E-13 6.7E-18 142.3 13.5 103 149-251 108-213 (412)
62 PRK04195 replication factor C 99.5 8.6E-13 1.9E-17 141.5 16.7 152 147-330 37-194 (482)
63 PRK00149 dnaA chromosomal repl 99.5 2.7E-13 5.9E-18 144.1 12.4 194 110-340 116-324 (450)
64 TIGR00362 DnaA chromosomal rep 99.5 3.3E-13 7.2E-18 141.4 12.7 184 111-331 105-303 (405)
65 TIGR00390 hslU ATP-dependent p 99.5 3.5E-13 7.6E-18 140.9 12.2 155 147-307 45-342 (441)
66 TIGR00382 clpX endopeptidase C 99.4 6.5E-13 1.4E-17 139.6 13.4 128 149-277 116-247 (413)
67 PRK07940 DNA polymerase III su 99.4 3.6E-12 7.8E-17 133.5 17.1 156 145-336 32-214 (394)
68 PRK14086 dnaA chromosomal repl 99.4 1.4E-12 3.1E-17 142.2 14.3 185 111-330 283-480 (617)
69 COG2256 MGS1 ATPase related to 99.4 2E-12 4.3E-17 133.2 14.6 150 114-309 22-174 (436)
70 PRK05201 hslU ATP-dependent pr 99.4 7.8E-13 1.7E-17 138.4 11.7 153 149-307 50-344 (443)
71 PHA02544 44 clamp loader, smal 99.4 5.2E-12 1.1E-16 127.3 17.0 130 147-310 41-172 (316)
72 PRK12422 chromosomal replicati 99.4 4.9E-12 1.1E-16 134.5 17.6 194 111-340 106-315 (445)
73 PRK07003 DNA polymerase III su 99.4 2.5E-12 5.3E-17 142.2 15.4 159 114-317 14-197 (830)
74 PRK14956 DNA polymerase III su 99.4 6.9E-12 1.5E-16 133.6 16.8 144 137-316 30-198 (484)
75 PRK14962 DNA polymerase III su 99.4 1.2E-11 2.6E-16 132.4 17.6 169 114-327 12-207 (472)
76 PRK14088 dnaA chromosomal repl 99.4 3.4E-12 7.3E-17 135.6 13.2 183 111-331 100-298 (440)
77 PRK06893 DNA replication initi 99.4 4.6E-12 9.9E-17 123.2 12.7 145 150-330 40-195 (229)
78 TIGR02640 gas_vesic_GvpN gas v 99.4 2E-11 4.3E-16 121.1 17.3 146 150-311 22-198 (262)
79 PRK13342 recombination factor 99.4 2.2E-11 4.8E-16 128.2 18.5 141 149-326 36-184 (413)
80 PRK12323 DNA polymerase III su 99.4 7.5E-12 1.6E-16 136.8 15.1 159 114-317 14-202 (700)
81 COG2255 RuvB Holliday junction 99.4 1.4E-11 2.9E-16 122.4 15.2 154 147-330 50-218 (332)
82 PLN03025 replication factor C 99.3 1.2E-11 2.5E-16 125.9 13.7 161 135-333 23-194 (319)
83 PRK14960 DNA polymerase III su 99.3 1.8E-11 3.9E-16 134.2 15.0 159 114-317 13-196 (702)
84 PRK05642 DNA replication initi 99.3 2.6E-11 5.5E-16 118.5 14.1 173 112-330 15-200 (234)
85 PRK07764 DNA polymerase III su 99.3 9.2E-11 2E-15 132.8 20.4 160 113-317 12-198 (824)
86 TIGR02928 orc1/cdc6 family rep 99.3 7.5E-11 1.6E-15 121.0 18.0 140 147-312 38-213 (365)
87 PRK14949 DNA polymerase III su 99.3 5.7E-11 1.2E-15 133.6 17.7 166 113-317 13-197 (944)
88 PRK12402 replication factor C 99.3 2.6E-11 5.5E-16 122.7 13.6 155 151-334 38-221 (337)
89 PRK00411 cdc6 cell division co 99.3 5.4E-11 1.2E-15 123.4 16.1 144 148-312 54-221 (394)
90 PRK14961 DNA polymerase III su 99.3 5.6E-11 1.2E-15 123.2 16.2 170 114-322 14-204 (363)
91 PF07728 AAA_5: AAA domain (dy 99.3 1.2E-12 2.6E-17 116.4 3.2 120 151-291 1-139 (139)
92 PRK11034 clpA ATP-dependent Cl 99.3 4.7E-11 1E-15 134.1 15.9 142 150-311 489-666 (758)
93 PF00308 Bac_DnaA: Bacterial d 99.3 1.5E-11 3.2E-16 119.1 9.7 182 111-330 3-200 (219)
94 PF07724 AAA_2: AAA domain (Cd 99.3 2.9E-12 6.2E-17 119.7 4.5 128 148-281 2-133 (171)
95 PRK08084 DNA replication initi 99.3 6.2E-11 1.4E-15 115.8 14.1 157 133-330 32-201 (235)
96 TIGR03420 DnaA_homol_Hda DnaA 99.3 7E-11 1.5E-15 113.0 13.9 159 133-331 25-194 (226)
97 PTZ00112 origin recognition co 99.3 3.3E-10 7.2E-15 126.5 21.0 141 148-313 780-951 (1164)
98 PRK14087 dnaA chromosomal repl 99.3 5.5E-11 1.2E-15 126.7 14.3 195 110-339 109-320 (450)
99 PRK07994 DNA polymerase III su 99.3 1.4E-10 3.1E-15 127.8 17.6 159 114-317 14-197 (647)
100 cd00009 AAA The AAA+ (ATPases 99.3 5.8E-11 1.3E-15 102.7 11.7 127 148-297 18-149 (151)
101 KOG0989 Replication factor C, 99.2 3.6E-11 7.7E-16 120.4 11.3 166 131-333 42-224 (346)
102 PRK08691 DNA polymerase III su 99.2 7.4E-11 1.6E-15 130.2 14.8 175 114-327 14-209 (709)
103 PRK06645 DNA polymerase III su 99.2 2E-10 4.3E-15 123.9 17.1 162 134-325 30-216 (507)
104 PRK08903 DnaA regulatory inact 99.2 9.2E-11 2E-15 113.1 13.0 168 111-331 13-192 (227)
105 TIGR02639 ClpA ATP-dependent C 99.2 1.4E-10 3.1E-15 130.4 16.3 141 149-312 483-663 (731)
106 COG1219 ClpX ATP-dependent pro 99.2 3.6E-11 7.8E-16 120.8 10.2 102 150-251 98-202 (408)
107 PRK14958 DNA polymerase III su 99.2 8.3E-11 1.8E-15 127.1 13.6 168 114-326 14-208 (509)
108 PRK14952 DNA polymerase III su 99.2 3.8E-10 8.2E-15 123.5 18.2 158 114-316 11-195 (584)
109 PRK14970 DNA polymerase III su 99.2 2.2E-10 4.8E-15 118.4 15.6 180 114-334 15-204 (367)
110 TIGR01650 PD_CobS cobaltochela 99.2 4.5E-11 9.7E-16 122.0 10.1 143 149-311 64-233 (327)
111 PRK08727 hypothetical protein; 99.2 5.5E-10 1.2E-14 109.0 17.2 142 150-330 42-196 (233)
112 PRK14957 DNA polymerase III su 99.2 2.5E-10 5.5E-15 124.0 16.1 159 114-317 14-197 (546)
113 PRK05563 DNA polymerase III su 99.2 2.5E-10 5.3E-15 124.8 16.0 158 114-316 14-196 (559)
114 smart00382 AAA ATPases associa 99.2 1.1E-10 2.4E-15 99.6 10.6 125 149-296 2-143 (148)
115 PRK13341 recombination factor 99.2 2.2E-10 4.8E-15 128.2 15.8 144 150-330 53-209 (725)
116 PRK06620 hypothetical protein; 99.2 1.2E-10 2.7E-15 112.4 12.0 162 111-330 11-181 (214)
117 PRK14963 DNA polymerase III su 99.2 3.5E-10 7.6E-15 122.1 16.8 159 114-317 12-194 (504)
118 TIGR00678 holB DNA polymerase 99.2 1.9E-10 4E-15 108.0 12.5 142 147-325 12-178 (188)
119 PRK14959 DNA polymerase III su 99.2 2.2E-10 4.8E-15 125.6 14.8 163 114-321 14-203 (624)
120 PRK08116 hypothetical protein; 99.2 1.4E-10 3E-15 115.8 12.1 135 107-278 76-221 (268)
121 PRK14951 DNA polymerase III su 99.2 1.8E-10 3.9E-15 126.6 13.6 168 114-326 14-213 (618)
122 PRK14964 DNA polymerase III su 99.2 2.4E-10 5.3E-15 122.6 14.3 168 114-326 11-205 (491)
123 PRK14965 DNA polymerase III su 99.2 1.3E-10 2.9E-15 127.3 12.1 159 114-317 14-197 (576)
124 KOG1969 DNA replication checkp 99.2 3.4E-10 7.4E-15 123.5 14.4 160 149-330 326-502 (877)
125 TIGR02397 dnaX_nterm DNA polym 99.2 3E-10 6.4E-15 116.1 12.9 147 147-327 34-207 (355)
126 TIGR03345 VI_ClpV1 type VI sec 99.2 1.4E-09 3.1E-14 123.9 19.7 111 147-278 593-719 (852)
127 KOG2028 ATPase related to the 99.2 3.4E-10 7.3E-15 115.6 12.8 134 136-309 152-292 (554)
128 TIGR02902 spore_lonB ATP-depen 99.1 5.7E-10 1.2E-14 121.3 15.3 159 148-322 85-289 (531)
129 PRK14969 DNA polymerase III su 99.1 2.9E-10 6.2E-15 123.5 12.9 165 114-317 14-197 (527)
130 PRK06305 DNA polymerase III su 99.1 1.3E-09 2.8E-14 116.4 17.5 168 113-325 14-209 (451)
131 PF05673 DUF815: Protein of un 99.1 1.4E-09 3.1E-14 106.7 15.5 150 135-318 38-214 (249)
132 PRK11331 5-methylcytosine-spec 99.1 3.7E-10 8E-15 119.5 12.1 137 149-299 194-358 (459)
133 PRK12377 putative replication 99.1 4.6E-10 1E-14 110.9 11.9 134 108-278 66-206 (248)
134 KOG0745 Putative ATP-dependent 99.1 2.4E-10 5.1E-15 118.7 10.2 147 151-300 228-388 (564)
135 PRK00440 rfc replication facto 99.1 1.9E-09 4E-14 108.2 16.2 163 133-333 25-197 (319)
136 PRK14948 DNA polymerase III su 99.1 2.4E-09 5.2E-14 118.3 17.6 149 147-323 36-207 (620)
137 PRK07133 DNA polymerase III su 99.1 1.2E-09 2.6E-14 121.5 14.9 165 114-317 16-196 (725)
138 PRK05896 DNA polymerase III su 99.1 1.1E-09 2.3E-14 119.7 14.3 143 147-323 36-205 (605)
139 PRK06835 DNA replication prote 99.1 3.3E-10 7.1E-15 116.2 9.7 140 108-278 134-289 (329)
140 PRK14955 DNA polymerase III su 99.1 8.1E-10 1.8E-14 115.9 12.4 170 113-321 13-211 (397)
141 PRK14953 DNA polymerase III su 99.1 1.2E-09 2.6E-14 117.5 13.9 173 114-325 14-207 (486)
142 PRK09111 DNA polymerase III su 99.1 8.3E-09 1.8E-13 113.5 19.3 164 114-316 22-209 (598)
143 PRK07952 DNA replication prote 99.0 1.4E-09 3.1E-14 107.2 11.9 114 133-278 84-205 (244)
144 PRK06921 hypothetical protein; 99.0 1.2E-09 2.6E-14 108.9 11.3 141 108-278 76-225 (266)
145 PRK06647 DNA polymerase III su 99.0 5.6E-09 1.2E-13 114.2 16.9 164 114-317 14-197 (563)
146 COG0714 MoxR-like ATPases [Gen 99.0 1.4E-09 3E-14 111.2 11.4 146 150-312 44-204 (329)
147 PRK10865 protein disaggregatio 99.0 7.9E-09 1.7E-13 118.2 18.2 140 150-312 599-780 (857)
148 CHL00095 clpC Clp protease ATP 99.0 3.2E-09 6.9E-14 120.9 15.0 111 147-278 536-662 (821)
149 PRK14954 DNA polymerase III su 99.0 4.7E-09 1E-13 115.7 15.6 171 113-322 13-212 (620)
150 TIGR02903 spore_lon_C ATP-depe 99.0 5.5E-09 1.2E-13 115.5 15.4 163 149-330 175-386 (615)
151 TIGR03346 chaperone_ClpB ATP-d 99.0 6E-09 1.3E-13 119.2 16.1 145 147-311 593-776 (852)
152 PRK14950 DNA polymerase III su 99.0 5.7E-09 1.2E-13 114.8 15.2 173 113-324 13-207 (585)
153 PRK08451 DNA polymerase III su 99.0 1.4E-08 3.1E-13 110.1 17.5 168 114-326 12-206 (535)
154 PHA02244 ATPase-like protein 99.0 3.1E-09 6.7E-14 110.1 11.3 136 149-307 119-269 (383)
155 PRK08181 transposase; Validate 99.0 1.5E-09 3.3E-14 108.4 8.3 100 149-278 106-209 (269)
156 COG0470 HolB ATPase involved i 98.9 5.2E-09 1.1E-13 104.9 11.1 128 147-304 22-174 (325)
157 PRK05707 DNA polymerase III su 98.9 2.8E-08 6E-13 102.1 16.3 159 146-334 19-202 (328)
158 PRK08939 primosomal protein Dn 98.9 8.8E-09 1.9E-13 104.8 11.7 68 148-223 155-228 (306)
159 COG1474 CDC6 Cdc6-related prot 98.9 3.6E-08 7.8E-13 102.6 16.4 167 119-311 10-203 (366)
160 PRK07471 DNA polymerase III su 98.9 4.4E-08 9.6E-13 101.9 17.0 158 147-334 39-237 (365)
161 PRK09087 hypothetical protein; 98.9 2.3E-08 5E-13 97.4 13.5 133 150-330 45-187 (226)
162 KOG0741 AAA+-type ATPase [Post 98.9 1.5E-08 3.3E-13 107.6 12.5 139 144-301 533-673 (744)
163 COG1220 HslU ATP-dependent pro 98.9 6.5E-08 1.4E-12 98.4 15.5 90 212-307 250-345 (444)
164 PRK14971 DNA polymerase III su 98.8 8E-08 1.7E-12 106.3 17.1 159 114-317 15-199 (614)
165 COG0542 clpA ATP-binding subun 98.8 2.3E-08 4.9E-13 111.7 12.6 146 143-311 514-705 (786)
166 PRK05564 DNA polymerase III su 98.8 1.7E-07 3.6E-12 95.2 17.7 149 147-325 24-177 (313)
167 PF01695 IstB_IS21: IstB-like 98.8 2.5E-09 5.4E-14 100.5 4.0 102 147-278 45-150 (178)
168 COG0593 DnaA ATPase involved i 98.8 3.6E-08 7.7E-13 103.5 12.9 185 108-330 79-278 (408)
169 PRK09112 DNA polymerase III su 98.8 2.9E-07 6.2E-12 95.4 18.3 148 146-321 42-223 (351)
170 PRK06526 transposase; Provisio 98.8 1.3E-08 2.9E-13 100.9 7.9 101 148-278 97-201 (254)
171 TIGR00602 rad24 checkpoint pro 98.8 9.4E-08 2E-12 105.7 14.3 145 145-312 106-288 (637)
172 PRK06964 DNA polymerase III su 98.8 2.7E-07 5.8E-12 95.3 16.6 156 147-334 19-224 (342)
173 COG2607 Predicted ATPase (AAA+ 98.7 2.7E-07 5.8E-12 90.3 14.7 149 136-318 72-246 (287)
174 PRK13407 bchI magnesium chelat 98.7 6.3E-08 1.4E-12 99.7 10.4 83 213-311 129-216 (334)
175 COG1484 DnaC DNA replication p 98.7 8.1E-08 1.8E-12 95.3 10.8 68 148-223 104-178 (254)
176 COG0542 clpA ATP-binding subun 98.7 1E-07 2.2E-12 106.5 12.1 135 151-311 193-346 (786)
177 PRK09183 transposase/IS protei 98.7 2.1E-08 4.6E-13 99.6 6.0 104 146-278 99-206 (259)
178 PRK07399 DNA polymerase III su 98.7 1.3E-06 2.8E-11 89.3 18.7 160 147-335 24-221 (314)
179 PRK04132 replication factor C 98.7 2.6E-07 5.6E-12 104.8 14.6 143 153-329 568-722 (846)
180 TIGR02031 BchD-ChlD magnesium 98.6 6.4E-08 1.4E-12 106.6 7.9 144 150-311 17-174 (589)
181 TIGR02442 Cob-chelat-sub cobal 98.6 1.7E-07 3.7E-12 104.1 11.0 144 150-311 26-214 (633)
182 PRK08769 DNA polymerase III su 98.6 9.4E-07 2E-11 90.5 15.6 158 146-335 23-208 (319)
183 smart00350 MCM minichromosome 98.6 8.3E-08 1.8E-12 104.0 7.9 137 151-311 238-400 (509)
184 COG2812 DnaX DNA polymerase II 98.6 1.9E-07 4E-12 100.7 10.2 178 114-330 14-212 (515)
185 PF07726 AAA_3: ATPase family 98.6 5.3E-08 1.1E-12 87.1 4.8 115 151-287 1-127 (131)
186 PRK08058 DNA polymerase III su 98.6 1.1E-06 2.4E-11 90.2 15.1 129 146-309 25-180 (329)
187 TIGR03015 pepcterm_ATPase puta 98.6 5.8E-06 1.3E-10 81.1 19.1 76 149-224 43-135 (269)
188 PRK06871 DNA polymerase III su 98.6 8E-07 1.7E-11 91.2 13.3 137 147-311 22-179 (325)
189 smart00763 AAA_PrkA PrkA AAA d 98.5 1.2E-06 2.6E-11 90.8 13.0 56 148-203 77-143 (361)
190 PF00158 Sigma54_activat: Sigm 98.5 3.5E-07 7.5E-12 85.3 7.8 120 149-292 22-155 (168)
191 PF00910 RNA_helicase: RNA hel 98.5 3.1E-07 6.7E-12 79.0 6.9 105 152-277 1-107 (107)
192 PRK07993 DNA polymerase III su 98.5 1.1E-06 2.4E-11 90.6 12.1 159 145-334 20-203 (334)
193 CHL00081 chlI Mg-protoporyphyr 98.5 7.7E-07 1.7E-11 92.2 10.7 84 212-311 144-232 (350)
194 PRK08699 DNA polymerase III su 98.5 9.4E-07 2E-11 90.7 10.6 134 147-309 19-183 (325)
195 PRK13531 regulatory ATPase Rav 98.5 6E-07 1.3E-11 96.2 9.5 140 149-310 39-193 (498)
196 TIGR02030 BchI-ChlI magnesium 98.4 3.5E-07 7.7E-12 94.3 7.3 85 211-311 130-219 (337)
197 PF03215 Rad17: Rad17 cell cyc 98.4 3E-06 6.4E-11 92.1 14.7 47 135-181 29-77 (519)
198 PRK06090 DNA polymerase III su 98.4 8E-06 1.7E-10 83.7 16.8 159 145-335 21-201 (319)
199 PF13401 AAA_22: AAA domain; P 98.4 9E-07 2E-11 77.1 7.6 77 149-225 4-100 (131)
200 PF13177 DNA_pol3_delta2: DNA 98.4 1.7E-06 3.7E-11 80.0 9.0 117 147-294 17-156 (162)
201 PF03969 AFG1_ATPase: AFG1-lik 98.3 1.2E-06 2.6E-11 91.2 7.2 32 144-175 57-88 (362)
202 cd01120 RecA-like_NTPases RecA 98.3 3.3E-06 7.1E-11 75.1 8.7 115 152-282 2-141 (165)
203 TIGR02974 phageshock_pspF psp 98.3 3.6E-06 7.8E-11 86.5 9.5 132 149-303 22-175 (329)
204 PF12775 AAA_7: P-loop contain 98.2 7E-07 1.5E-11 89.5 3.5 142 149-311 33-193 (272)
205 PF13173 AAA_14: AAA domain 98.2 6.9E-06 1.5E-10 72.5 9.4 69 150-224 3-73 (128)
206 PRK11608 pspF phage shock prot 98.2 6E-06 1.3E-10 84.7 10.1 132 149-303 29-182 (326)
207 PF06068 TIP49: TIP49 C-termin 98.2 1.4E-06 2.9E-11 90.3 5.0 55 149-204 50-106 (398)
208 PF05729 NACHT: NACHT domain 98.2 2.1E-05 4.5E-10 70.5 12.1 145 150-313 1-165 (166)
209 PRK10820 DNA-binding transcrip 98.2 2E-05 4.4E-10 85.8 14.1 185 113-330 201-421 (520)
210 PHA00729 NTP-binding motif con 98.2 4.3E-06 9.2E-11 81.7 7.9 26 150-175 18-43 (226)
211 COG1224 TIP49 DNA helicase TIP 98.2 2.1E-06 4.5E-11 88.1 5.9 57 147-204 63-121 (450)
212 TIGR01817 nifA Nif-specific re 98.1 5.8E-06 1.3E-10 90.0 8.8 110 148-278 218-341 (534)
213 KOG1514 Origin recognition com 98.1 2E-05 4.4E-10 86.7 12.5 137 151-314 424-592 (767)
214 TIGR00368 Mg chelatase-related 98.1 5.6E-06 1.2E-10 89.6 8.2 24 149-172 211-234 (499)
215 PRK11388 DNA-binding transcrip 98.1 1E-05 2.2E-10 90.0 10.4 134 149-306 348-502 (638)
216 PF05621 TniB: Bacterial TniB 98.1 8.4E-05 1.8E-09 75.4 15.6 205 134-367 46-284 (302)
217 KOG0991 Replication factor C, 98.1 1.5E-05 3.2E-10 78.0 8.7 142 151-324 50-200 (333)
218 KOG1968 Replication factor C, 98.0 8.5E-06 1.9E-10 92.9 7.6 156 151-334 359-526 (871)
219 PF01637 Arch_ATPase: Archaeal 98.0 0.00014 3.1E-09 68.5 13.9 25 149-173 20-44 (234)
220 TIGR02237 recomb_radB DNA repa 98.0 4.5E-05 9.8E-10 72.4 10.5 83 144-226 7-111 (209)
221 PRK05022 anaerobic nitric oxid 98.0 4.8E-05 1.1E-09 82.6 11.6 136 148-306 209-367 (509)
222 PF06309 Torsin: Torsin; Inte 98.0 7.9E-05 1.7E-09 66.6 10.7 44 130-173 34-77 (127)
223 PTZ00111 DNA replication licen 98.0 2.3E-05 5E-10 89.3 9.0 133 150-306 493-652 (915)
224 PRK15429 formate hydrogenlyase 97.9 3.6E-05 7.9E-10 86.4 10.4 109 148-278 398-521 (686)
225 KOG2035 Replication factor C, 97.9 0.00059 1.3E-08 68.5 17.6 155 151-332 36-221 (351)
226 KOG1051 Chaperone HSP104 and r 97.9 4.6E-05 9.9E-10 86.8 11.1 112 147-279 589-712 (898)
227 PF00931 NB-ARC: NB-ARC domain 97.9 0.00019 4.1E-09 70.9 14.3 26 147-172 17-42 (287)
228 KOG1970 Checkpoint RAD17-RFC c 97.9 9.2E-05 2E-09 79.8 12.4 46 136-182 93-143 (634)
229 PHA02774 E1; Provisional 97.9 5.2E-05 1.1E-09 82.8 10.7 117 134-284 421-539 (613)
230 COG1221 PspF Transcriptional r 97.9 1.2E-05 2.5E-10 84.6 5.6 131 150-303 102-252 (403)
231 COG1239 ChlI Mg-chelatase subu 97.9 9.7E-05 2.1E-09 77.6 12.2 88 210-313 142-234 (423)
232 PRK15424 propionate catabolism 97.9 2.5E-05 5.5E-10 85.3 8.1 109 149-278 242-373 (538)
233 PF14532 Sigma54_activ_2: Sigm 97.9 2.8E-05 6.1E-10 69.5 7.0 59 149-225 21-82 (138)
234 PRK09862 putative ATP-dependen 97.9 3.5E-05 7.5E-10 83.6 9.0 25 149-173 210-234 (506)
235 PLN03210 Resistant to P. syrin 97.9 0.00034 7.3E-09 83.0 18.0 32 145-176 203-234 (1153)
236 PF12774 AAA_6: Hydrolytic ATP 97.9 7.8E-05 1.7E-09 73.1 10.6 139 149-307 32-176 (231)
237 cd01124 KaiC KaiC is a circadi 97.9 0.00013 2.8E-09 67.5 11.5 31 152-182 2-35 (187)
238 KOG0990 Replication factor C, 97.9 4.6E-05 9.9E-10 77.5 9.0 134 151-316 64-208 (360)
239 KOG2170 ATPase of the AAA+ sup 97.9 3.7E-05 8E-10 77.6 8.3 94 129-225 90-191 (344)
240 COG1618 Predicted nucleotide k 97.9 0.00016 3.4E-09 67.3 11.3 27 147-173 3-29 (179)
241 PHA02624 large T antigen; Prov 97.8 0.00018 4E-09 78.9 13.2 142 144-306 426-569 (647)
242 TIGR02329 propionate_PrpR prop 97.8 7.9E-05 1.7E-09 81.3 10.4 109 149-278 235-358 (526)
243 COG3829 RocR Transcriptional r 97.8 3E-05 6.4E-10 83.5 6.6 148 110-292 239-402 (560)
244 PF13207 AAA_17: AAA domain; P 97.8 2.1E-05 4.5E-10 67.8 4.3 31 152-182 2-32 (121)
245 PF03266 NTPase_1: NTPase; In 97.8 9.7E-06 2.1E-10 75.7 1.5 22 152-173 2-23 (168)
246 PRK09361 radB DNA repair and r 97.8 7.7E-05 1.7E-09 71.8 7.8 40 144-183 18-60 (225)
247 PRK15115 response regulator Gl 97.8 6.9E-05 1.5E-09 79.2 8.1 132 149-304 157-311 (444)
248 PRK00131 aroK shikimate kinase 97.7 3.4E-05 7.4E-10 70.2 4.9 35 147-181 2-36 (175)
249 PRK05917 DNA polymerase III su 97.7 0.00024 5.1E-09 72.0 11.1 123 146-296 16-151 (290)
250 PF13671 AAA_33: AAA domain; P 97.7 5.3E-05 1.2E-09 67.0 5.7 33 152-186 2-34 (143)
251 PRK08118 topology modulation p 97.7 8.6E-05 1.9E-09 69.0 7.2 43 151-193 3-45 (167)
252 PRK09376 rho transcription ter 97.7 8.9E-05 1.9E-09 77.9 7.7 75 152-226 172-270 (416)
253 PRK11823 DNA repair protein Ra 97.7 0.00016 3.5E-09 77.4 9.5 80 144-227 75-171 (446)
254 TIGR02012 tigrfam_recA protein 97.7 0.00032 6.9E-09 72.1 11.2 84 144-227 50-148 (321)
255 PF00493 MCM: MCM2/3/5 family 97.7 4.3E-05 9.2E-10 78.7 4.8 136 149-313 57-223 (331)
256 COG1485 Predicted ATPase [Gene 97.7 8.3E-05 1.8E-09 76.5 6.6 107 146-283 62-177 (367)
257 cd01128 rho_factor Transcripti 97.6 0.00016 3.5E-09 71.7 8.2 77 149-225 16-116 (249)
258 PRK06067 flagellar accessory p 97.6 0.00023 5E-09 69.1 9.1 82 144-225 20-133 (234)
259 PRK10923 glnG nitrogen regulat 97.6 0.00015 3.4E-09 77.2 8.6 132 149-303 161-314 (469)
260 PRK07132 DNA polymerase III su 97.6 0.0022 4.7E-08 65.4 16.2 128 147-309 16-160 (299)
261 cd00983 recA RecA is a bacter 97.6 0.00051 1.1E-08 70.7 11.6 84 144-227 50-148 (325)
262 PRK13947 shikimate kinase; Pro 97.6 0.0002 4.4E-09 65.6 7.9 41 151-193 3-43 (171)
263 PRK11361 acetoacetate metaboli 97.6 0.00028 6.1E-09 74.7 10.1 109 149-278 166-288 (457)
264 PRK13695 putative NTPase; Prov 97.6 0.00042 9.2E-09 64.2 9.9 23 151-173 2-24 (174)
265 PRK07261 topology modulation p 97.6 0.00022 4.7E-09 66.5 7.5 43 151-193 2-44 (171)
266 cd03283 ABC_MutS-like MutS-lik 97.5 0.00055 1.2E-08 65.5 10.2 23 150-172 26-48 (199)
267 TIGR02915 PEP_resp_reg putativ 97.5 7.9E-05 1.7E-09 78.8 4.7 134 149-305 162-317 (445)
268 KOG2227 Pre-initiation complex 97.5 0.0015 3.1E-08 69.7 13.5 170 134-330 159-363 (529)
269 KOG1942 DNA helicase, TBP-inte 97.5 9.7E-05 2.1E-09 74.5 4.6 56 149-205 64-121 (456)
270 TIGR01618 phage_P_loop phage n 97.5 0.00011 2.4E-09 71.6 4.8 24 148-171 11-34 (220)
271 PRK06762 hypothetical protein; 97.5 0.0002 4.3E-09 65.5 6.3 39 149-187 2-40 (166)
272 cd01394 radB RadB. The archaea 97.5 0.0007 1.5E-08 64.8 10.2 40 144-183 14-56 (218)
273 TIGR00764 lon_rel lon-related 97.5 0.00011 2.4E-09 81.6 5.1 55 150-204 38-102 (608)
274 cd01121 Sms Sms (bacterial rad 97.5 0.00049 1.1E-08 72.1 9.2 80 144-227 77-173 (372)
275 cd00227 CPT Chloramphenicol (C 97.5 0.00029 6.3E-09 65.4 6.8 34 149-182 2-35 (175)
276 PRK09354 recA recombinase A; P 97.4 0.00052 1.1E-08 71.2 9.0 83 144-226 55-152 (349)
277 PRK08533 flagellar accessory p 97.4 0.0016 3.4E-08 63.7 11.8 38 145-182 20-60 (230)
278 PRK03839 putative kinase; Prov 97.4 0.00014 3E-09 67.6 4.1 31 151-181 2-32 (180)
279 cd02021 GntK Gluconate kinase 97.4 0.00064 1.4E-08 61.0 8.0 28 152-179 2-29 (150)
280 cd01123 Rad51_DMC1_radA Rad51_ 97.4 0.00077 1.7E-08 65.0 9.0 83 144-226 14-129 (235)
281 PLN02200 adenylate kinase fami 97.4 0.00022 4.8E-09 70.0 5.2 41 144-186 38-78 (234)
282 cd00464 SK Shikimate kinase (S 97.4 0.00018 3.9E-09 64.4 4.3 30 152-181 2-31 (154)
283 PRK05818 DNA polymerase III su 97.4 0.0025 5.4E-08 63.7 12.6 122 147-296 5-144 (261)
284 PRK07276 DNA polymerase III su 97.4 0.0034 7.4E-08 63.7 13.6 133 146-308 21-172 (290)
285 cd03281 ABC_MSH5_euk MutS5 hom 97.3 0.0023 5E-08 61.8 11.7 23 149-171 29-51 (213)
286 PRK13949 shikimate kinase; Pro 97.3 0.00046 1E-08 64.3 6.5 31 151-181 3-33 (169)
287 cd01131 PilT Pilus retraction 97.3 0.00045 9.8E-09 65.8 6.5 24 151-174 3-26 (198)
288 cd01393 recA_like RecA is a b 97.3 0.0013 2.9E-08 63.0 9.8 29 144-172 14-42 (226)
289 TIGR01359 UMP_CMP_kin_fam UMP- 97.3 0.00021 4.6E-09 66.2 4.1 33 152-186 2-34 (183)
290 PRK13948 shikimate kinase; Pro 97.3 0.00053 1.2E-08 64.9 6.7 45 147-193 8-52 (182)
291 PRK08233 hypothetical protein; 97.3 0.0011 2.4E-08 60.9 8.7 32 149-180 3-35 (182)
292 TIGR01818 ntrC nitrogen regula 97.3 0.00016 3.5E-09 76.7 3.6 109 149-278 157-279 (463)
293 PF06745 KaiC: KaiC; InterPro 97.3 0.00083 1.8E-08 64.7 8.1 81 144-224 14-127 (226)
294 TIGR02858 spore_III_AA stage I 97.3 0.0006 1.3E-08 68.5 7.3 25 150-174 112-136 (270)
295 PRK14532 adenylate kinase; Pro 97.3 0.00023 5.1E-09 66.5 4.0 34 151-186 2-35 (188)
296 COG5271 MDN1 AAA ATPase contai 97.3 0.002 4.2E-08 76.8 11.9 147 148-314 1542-1706(4600)
297 COG2204 AtoC Response regulato 97.3 0.00067 1.5E-08 72.7 7.8 37 149-185 164-203 (464)
298 PRK00625 shikimate kinase; Pro 97.3 0.00028 6E-09 66.2 4.4 31 151-181 2-32 (173)
299 PRK13946 shikimate kinase; Pro 97.3 0.00062 1.3E-08 63.9 6.8 33 149-181 10-42 (184)
300 cd00561 CobA_CobO_BtuR ATP:cor 97.3 0.0018 3.8E-08 60.2 9.5 74 151-224 4-107 (159)
301 PHA02530 pseT polynucleotide k 97.3 0.00084 1.8E-08 67.3 8.0 36 149-185 2-37 (300)
302 TIGR01313 therm_gnt_kin carboh 97.3 0.00082 1.8E-08 61.2 7.2 28 152-179 1-28 (163)
303 KOG2383 Predicted ATPase [Gene 97.3 0.00086 1.9E-08 70.2 8.1 28 146-173 111-138 (467)
304 PRK14531 adenylate kinase; Pro 97.3 0.00032 6.8E-09 65.8 4.5 30 150-179 3-32 (183)
305 TIGR03877 thermo_KaiC_1 KaiC d 97.2 0.0011 2.4E-08 64.8 8.4 82 144-225 16-139 (237)
306 KOG3347 Predicted nucleotide k 97.2 0.00026 5.6E-09 65.1 3.5 31 151-181 9-39 (176)
307 PF05707 Zot: Zonular occluden 97.2 0.00072 1.6E-08 64.1 6.8 121 151-296 2-142 (193)
308 cd02027 APSK Adenosine 5'-phos 97.2 0.001 2.2E-08 60.5 7.4 34 152-185 2-38 (149)
309 cd00984 DnaB_C DnaB helicase C 97.2 0.0037 8E-08 60.5 11.7 38 145-182 9-50 (242)
310 cd01428 ADK Adenylate kinase ( 97.2 0.00032 7E-09 65.3 4.1 28 152-179 2-29 (194)
311 cd03238 ABC_UvrA The excision 97.2 0.0036 7.7E-08 58.9 11.0 27 146-172 18-44 (176)
312 PRK10365 transcriptional regul 97.2 0.0018 4E-08 68.1 10.0 131 149-303 162-315 (441)
313 TIGR03878 thermo_KaiC_2 KaiC d 97.2 0.0022 4.8E-08 63.8 9.9 82 144-225 31-144 (259)
314 cd02020 CMPK Cytidine monophos 97.2 0.00037 8E-09 61.6 3.9 30 152-181 2-31 (147)
315 COG0563 Adk Adenylate kinase a 97.2 0.00039 8.4E-09 65.6 4.2 34 151-186 2-35 (178)
316 COG3604 FhlA Transcriptional r 97.2 0.00041 8.8E-09 74.3 4.6 121 147-292 244-379 (550)
317 PTZ00088 adenylate kinase 1; P 97.2 0.00051 1.1E-08 67.3 5.0 35 147-181 4-38 (229)
318 TIGR00767 rho transcription te 97.1 0.0014 3E-08 69.2 8.4 75 151-225 170-268 (415)
319 PRK06547 hypothetical protein; 97.1 0.0005 1.1E-08 64.4 4.6 43 147-191 13-55 (172)
320 PRK05537 bifunctional sulfate 97.1 0.0023 5.1E-08 70.6 10.5 101 118-221 362-473 (568)
321 PRK14527 adenylate kinase; Pro 97.1 0.00041 9E-09 65.3 4.0 33 147-179 4-36 (191)
322 PRK09519 recA DNA recombinatio 97.1 0.0017 3.6E-08 73.8 9.4 83 144-226 55-152 (790)
323 TIGR02688 conserved hypothetic 97.1 0.00082 1.8E-08 71.3 6.5 63 146-225 206-273 (449)
324 TIGR03574 selen_PSTK L-seryl-t 97.1 0.0012 2.5E-08 64.9 7.2 69 152-221 2-76 (249)
325 PRK04296 thymidine kinase; Pro 97.1 0.0015 3.3E-08 61.9 7.7 71 150-222 3-88 (190)
326 PRK04040 adenylate kinase; Pro 97.1 0.00055 1.2E-08 65.0 4.6 31 148-178 1-33 (188)
327 PF13521 AAA_28: AAA domain; P 97.1 0.00066 1.4E-08 62.0 4.9 27 152-179 2-28 (163)
328 PRK06217 hypothetical protein; 97.1 0.00052 1.1E-08 64.2 4.2 31 151-181 3-33 (183)
329 PRK05973 replicative DNA helic 97.1 0.0093 2E-07 58.9 13.1 40 144-183 59-101 (237)
330 cd00544 CobU Adenosylcobinamid 97.1 0.0024 5.3E-08 59.7 8.6 32 152-183 2-33 (169)
331 TIGR01360 aden_kin_iso1 adenyl 97.1 0.00057 1.2E-08 63.2 4.4 29 151-179 5-33 (188)
332 TIGR02236 recomb_radA DNA repa 97.1 0.0018 4E-08 65.6 8.5 41 144-184 90-139 (310)
333 KOG0478 DNA replication licens 97.1 0.00087 1.9E-08 73.9 6.3 135 147-301 460-616 (804)
334 PRK12608 transcription termina 97.1 0.0013 2.9E-08 68.8 7.4 76 151-226 135-234 (380)
335 cd01122 GP4d_helicase GP4d_hel 97.1 0.0027 5.8E-08 62.7 9.2 38 145-182 26-67 (271)
336 PRK05800 cobU adenosylcobinami 97.1 0.0031 6.7E-08 59.0 9.1 34 151-184 3-36 (170)
337 PRK14530 adenylate kinase; Pro 97.1 0.0006 1.3E-08 65.5 4.4 30 151-180 5-34 (215)
338 COG0703 AroK Shikimate kinase 97.0 0.00064 1.4E-08 63.9 4.3 42 150-193 3-44 (172)
339 PRK06696 uridine kinase; Valid 97.0 0.0015 3.2E-08 63.3 7.0 40 147-186 20-62 (223)
340 PRK04301 radA DNA repair and r 97.0 0.0036 7.7E-08 63.9 10.1 29 144-172 97-125 (317)
341 TIGR00416 sms DNA repair prote 97.0 0.0075 1.6E-07 64.9 12.9 83 144-226 89-184 (454)
342 TIGR03880 KaiC_arch_3 KaiC dom 97.0 0.0067 1.5E-07 58.4 11.3 39 144-182 11-52 (224)
343 PRK02496 adk adenylate kinase; 97.0 0.00065 1.4E-08 63.3 4.1 30 151-180 3-32 (184)
344 TIGR02782 TrbB_P P-type conjug 97.0 0.0015 3.3E-08 66.4 7.1 69 149-221 132-213 (299)
345 PRK08154 anaerobic benzoate ca 97.0 0.0016 3.5E-08 66.4 7.1 57 124-181 108-165 (309)
346 PF13191 AAA_16: AAA ATPase do 97.0 0.0012 2.7E-08 60.4 5.7 47 139-185 14-63 (185)
347 PRK14528 adenylate kinase; Pro 97.0 0.00084 1.8E-08 63.3 4.4 30 151-180 3-32 (186)
348 TIGR01351 adk adenylate kinase 97.0 0.00074 1.6E-08 64.6 4.0 28 152-179 2-29 (210)
349 cd03243 ABC_MutS_homologs The 97.0 0.0071 1.5E-07 57.5 10.7 23 149-171 29-51 (202)
350 PF06414 Zeta_toxin: Zeta toxi 96.9 0.0032 7E-08 59.7 8.3 44 146-189 12-56 (199)
351 PRK03731 aroL shikimate kinase 96.9 0.00092 2E-08 61.4 4.4 31 151-181 4-34 (171)
352 cd00046 DEXDc DEAD-like helica 96.9 0.00091 2E-08 56.7 4.0 25 150-174 1-25 (144)
353 PF08433 KTI12: Chromatin asso 96.9 0.0025 5.3E-08 64.1 7.6 73 151-224 3-82 (270)
354 TIGR02238 recomb_DMC1 meiotic 96.9 0.004 8.7E-08 63.8 9.3 83 144-227 91-206 (313)
355 PRK00279 adk adenylate kinase; 96.9 0.00089 1.9E-08 64.3 4.2 28 152-179 3-30 (215)
356 PLN03187 meiotic recombination 96.9 0.007 1.5E-07 62.9 11.1 82 145-227 122-236 (344)
357 TIGR01420 pilT_fam pilus retra 96.9 0.002 4.3E-08 66.7 7.0 68 150-221 123-204 (343)
358 COG3854 SpoIIIAA ncharacterize 96.9 0.002 4.2E-08 63.4 6.4 72 150-221 138-227 (308)
359 smart00534 MUTSac ATPase domai 96.9 0.01 2.2E-07 55.8 11.1 19 152-170 2-20 (185)
360 COG1102 Cmk Cytidylate kinase 96.9 0.00085 1.8E-08 62.5 3.6 28 152-179 3-30 (179)
361 PF01583 APS_kinase: Adenylyls 96.9 0.0052 1.1E-07 57.0 8.8 41 149-189 2-45 (156)
362 COG4619 ABC-type uncharacteriz 96.9 0.0048 1E-07 58.2 8.4 27 146-172 26-52 (223)
363 cd02019 NK Nucleoside/nucleoti 96.9 0.0032 7E-08 49.9 6.4 37 152-188 2-39 (69)
364 PF05272 VirE: Virulence-assoc 96.9 0.0039 8.4E-08 59.9 8.1 30 143-172 46-75 (198)
365 PF13245 AAA_19: Part of AAA d 96.9 0.0017 3.8E-08 52.8 4.8 34 150-183 11-51 (76)
366 PRK15455 PrkA family serine pr 96.8 0.0021 4.5E-08 70.6 6.7 34 149-182 103-137 (644)
367 COG1936 Predicted nucleotide k 96.8 0.0009 2E-08 62.8 3.4 30 151-181 2-31 (180)
368 PRK05057 aroK shikimate kinase 96.8 0.0013 2.8E-08 61.4 4.5 34 149-182 4-37 (172)
369 PRK01184 hypothetical protein; 96.8 0.0012 2.6E-08 61.4 4.3 30 150-180 2-31 (184)
370 cd01130 VirB11-like_ATPase Typ 96.8 0.0039 8.4E-08 58.6 7.7 26 148-173 24-49 (186)
371 cd03216 ABC_Carb_Monos_I This 96.8 0.0054 1.2E-07 56.4 8.5 29 145-173 22-50 (163)
372 COG1241 MCM2 Predicted ATPase 96.8 0.0009 2E-08 74.7 3.8 137 150-306 320-478 (682)
373 cd03280 ABC_MutS2 MutS2 homolo 96.8 0.011 2.4E-07 56.1 10.8 21 150-170 29-49 (200)
374 cd00267 ABC_ATPase ABC (ATP-bi 96.8 0.0067 1.4E-07 55.1 8.8 28 147-174 23-50 (157)
375 PF00406 ADK: Adenylate kinase 96.8 0.001 2.2E-08 60.1 3.3 31 154-186 1-31 (151)
376 PF13086 AAA_11: AAA domain; P 96.8 0.001 2.2E-08 62.7 3.4 23 151-173 19-41 (236)
377 PRK04182 cytidylate kinase; Pr 96.8 0.0014 3E-08 60.1 4.2 29 151-179 2-30 (180)
378 cd03115 SRP The signal recogni 96.8 0.0057 1.2E-07 56.3 8.2 33 151-183 2-37 (173)
379 PF01078 Mg_chelatase: Magnesi 96.8 0.001 2.2E-08 64.3 3.3 24 150-173 23-46 (206)
380 PRK14722 flhF flagellar biosyn 96.8 0.0019 4.2E-08 67.7 5.6 28 146-173 134-161 (374)
381 PLN02674 adenylate kinase 96.7 0.0015 3.3E-08 64.7 4.4 38 147-186 29-66 (244)
382 PF13238 AAA_18: AAA domain; P 96.7 0.0013 2.7E-08 56.6 3.4 22 152-173 1-22 (129)
383 PRK05541 adenylylsulfate kinas 96.7 0.006 1.3E-07 56.4 8.1 40 146-185 4-46 (176)
384 PRK09302 circadian clock prote 96.7 0.0066 1.4E-07 65.9 9.7 82 144-225 26-143 (509)
385 PRK13406 bchD magnesium chelat 96.7 0.0089 1.9E-07 66.2 10.7 129 150-296 26-165 (584)
386 PF05970 PIF1: PIF1-like helic 96.7 0.0053 1.2E-07 64.0 8.4 39 147-185 20-61 (364)
387 TIGR01526 nadR_NMN_Atrans nico 96.7 0.0033 7.2E-08 64.7 6.8 71 149-220 162-240 (325)
388 TIGR00708 cobA cob(I)alamin ad 96.7 0.01 2.2E-07 56.0 9.4 73 151-223 7-108 (173)
389 TIGR00150 HI0065_YjeE ATPase, 96.7 0.002 4.4E-08 58.1 4.3 30 147-176 20-49 (133)
390 PRK14526 adenylate kinase; Pro 96.7 0.0018 3.8E-08 62.7 4.1 33 152-186 3-35 (211)
391 PRK05986 cob(I)alamin adenolsy 96.7 0.01 2.2E-07 56.7 9.2 74 150-223 23-126 (191)
392 PRK04328 hypothetical protein; 96.7 0.003 6.6E-08 62.3 5.8 38 144-181 18-58 (249)
393 TIGR02173 cyt_kin_arch cytidyl 96.6 0.0018 3.9E-08 58.9 3.9 30 151-180 2-31 (171)
394 COG1373 Predicted ATPase (AAA+ 96.6 0.052 1.1E-06 57.5 15.4 79 139-224 28-106 (398)
395 PRK12339 2-phosphoglycerate ki 96.6 0.0021 4.5E-08 61.6 4.4 30 149-178 3-32 (197)
396 PTZ00035 Rad51 protein; Provis 96.6 0.012 2.5E-07 61.0 10.3 29 144-172 113-141 (337)
397 KOG1051 Chaperone HSP104 and r 96.6 0.0049 1.1E-07 70.6 8.0 137 150-312 209-364 (898)
398 TIGR02525 plasmid_TraJ plasmid 96.6 0.004 8.7E-08 65.3 6.8 68 150-221 150-234 (372)
399 PF00437 T2SE: Type II/IV secr 96.6 0.0033 7.1E-08 62.3 5.9 69 149-221 127-206 (270)
400 TIGR00455 apsK adenylylsulfate 96.6 0.011 2.4E-07 55.1 9.1 40 147-186 16-58 (184)
401 PF07693 KAP_NTPase: KAP famil 96.6 0.026 5.6E-07 56.9 12.5 37 140-176 11-47 (325)
402 cd03284 ABC_MutS1 MutS1 homolo 96.6 0.015 3.3E-07 56.2 10.3 22 150-171 31-52 (216)
403 PRK03846 adenylylsulfate kinas 96.6 0.0089 1.9E-07 56.7 8.5 39 147-185 22-63 (198)
404 PRK04220 2-phosphoglycerate ki 96.6 0.0033 7.2E-08 64.0 5.7 33 145-177 88-120 (301)
405 KOG0480 DNA replication licens 96.6 0.0022 4.8E-08 70.4 4.6 139 150-311 379-542 (764)
406 cd03282 ABC_MSH4_euk MutS4 hom 96.6 0.02 4.3E-07 55.1 10.8 26 147-172 27-52 (204)
407 PRK14974 cell division protein 96.6 0.017 3.7E-07 59.9 10.9 35 148-182 139-176 (336)
408 PRK13833 conjugal transfer pro 96.6 0.0066 1.4E-07 62.6 7.7 69 149-221 144-224 (323)
409 PF00448 SRP54: SRP54-type pro 96.6 0.0087 1.9E-07 57.2 8.1 33 149-181 1-36 (196)
410 PRK04841 transcriptional regul 96.5 0.041 8.9E-07 63.1 14.9 32 148-180 31-62 (903)
411 PRK13764 ATPase; Provisional 96.5 0.004 8.6E-08 69.0 6.3 26 149-174 257-282 (602)
412 cd03227 ABC_Class2 ABC-type Cl 96.5 0.015 3.2E-07 53.5 9.2 25 149-173 21-45 (162)
413 PRK00889 adenylylsulfate kinas 96.5 0.0086 1.9E-07 55.3 7.7 37 148-184 3-42 (175)
414 PLN02459 probable adenylate ki 96.5 0.0032 6.9E-08 63.0 5.1 35 149-185 29-63 (261)
415 cd03228 ABCC_MRP_Like The MRP 96.5 0.012 2.6E-07 54.3 8.7 29 145-173 24-52 (171)
416 TIGR02239 recomb_RAD51 DNA rep 96.5 0.0096 2.1E-07 61.1 8.7 29 144-172 91-119 (316)
417 PF01443 Viral_helicase1: Vira 96.5 0.00093 2E-08 64.0 1.1 22 152-173 1-22 (234)
418 COG4650 RtcR Sigma54-dependent 96.5 0.0018 4E-08 65.5 3.2 71 149-225 208-295 (531)
419 cd03222 ABC_RNaseL_inhibitor T 96.5 0.012 2.6E-07 55.4 8.6 75 146-223 22-100 (177)
420 PLN03186 DNA repair protein RA 96.5 0.011 2.5E-07 61.3 9.1 82 145-226 119-232 (342)
421 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.5 0.0028 6E-08 57.3 4.1 28 146-173 23-50 (144)
422 PRK12338 hypothetical protein; 96.5 0.003 6.5E-08 64.9 4.7 31 148-178 3-33 (319)
423 PF04665 Pox_A32: Poxvirus A32 96.5 0.063 1.4E-06 53.2 13.8 137 146-311 10-170 (241)
424 PF09848 DUF2075: Uncharacteri 96.5 0.0045 9.7E-08 64.1 6.0 23 151-173 3-25 (352)
425 PRK13894 conjugal transfer ATP 96.5 0.0066 1.4E-07 62.4 7.0 69 149-221 148-228 (319)
426 PRK00300 gmk guanylate kinase; 96.5 0.013 2.9E-07 55.2 8.7 28 147-174 3-30 (205)
427 PRK14737 gmk guanylate kinase; 96.4 0.0054 1.2E-07 58.1 5.9 26 148-173 3-28 (186)
428 TIGR01425 SRP54_euk signal rec 96.4 0.024 5.1E-07 60.6 11.3 37 147-183 98-137 (429)
429 PF14516 AAA_35: AAA-like doma 96.4 0.34 7.3E-06 50.0 19.2 39 148-186 30-71 (331)
430 TIGR01613 primase_Cterm phage/ 96.4 0.022 4.7E-07 57.8 10.3 69 144-223 71-139 (304)
431 PRK13900 type IV secretion sys 96.4 0.0054 1.2E-07 63.4 5.8 70 148-221 159-244 (332)
432 TIGR00064 ftsY signal recognit 96.4 0.016 3.4E-07 58.3 9.0 37 146-182 69-108 (272)
433 PRK05480 uridine/cytidine kina 96.4 0.0052 1.1E-07 58.5 5.3 36 147-182 4-40 (209)
434 cd03246 ABCC_Protease_Secretio 96.4 0.033 7.3E-07 51.5 10.5 27 147-173 26-52 (173)
435 cd03230 ABC_DR_subfamily_A Thi 96.4 0.017 3.7E-07 53.4 8.5 27 147-173 24-50 (173)
436 PF02456 Adeno_IVa2: Adenoviru 96.3 0.015 3.4E-07 59.3 8.6 39 133-171 64-109 (369)
437 PF01745 IPT: Isopentenyl tran 96.3 0.0054 1.2E-07 59.7 5.0 40 150-189 2-41 (233)
438 TIGR02788 VirB11 P-type DNA tr 96.3 0.0066 1.4E-07 61.9 6.0 72 146-221 141-227 (308)
439 PRK08099 bifunctional DNA-bind 96.3 0.0078 1.7E-07 63.7 6.7 31 149-179 219-249 (399)
440 KOG0477 DNA replication licens 96.3 0.0039 8.5E-08 68.4 4.5 144 150-313 483-652 (854)
441 cd03287 ABC_MSH3_euk MutS3 hom 96.3 0.032 6.9E-07 54.5 10.5 25 147-171 29-53 (222)
442 PRK00771 signal recognition pa 96.3 0.028 6E-07 60.3 10.8 37 147-183 93-132 (437)
443 PRK14529 adenylate kinase; Pro 96.3 0.0034 7.3E-08 61.4 3.6 35 152-188 3-37 (223)
444 PRK13975 thymidylate kinase; P 96.3 0.0076 1.6E-07 56.4 5.9 28 150-177 3-30 (196)
445 TIGR02655 circ_KaiC circadian 96.3 0.022 4.7E-07 61.8 9.9 40 144-183 16-59 (484)
446 PLN02199 shikimate kinase 96.2 0.0092 2E-07 60.8 6.5 33 149-181 102-134 (303)
447 COG2074 2-phosphoglycerate kin 96.2 0.0066 1.4E-07 60.3 5.3 51 129-179 66-119 (299)
448 COG4178 ABC-type uncharacteriz 96.2 0.018 3.9E-07 63.7 9.1 28 145-172 415-442 (604)
449 cd00071 GMPK Guanosine monopho 96.2 0.02 4.4E-07 51.3 7.9 25 152-176 2-26 (137)
450 PRK10867 signal recognition pa 96.2 0.018 3.9E-07 61.7 8.6 37 147-183 98-138 (433)
451 PRK10416 signal recognition pa 96.2 0.037 8.1E-07 56.9 10.6 36 147-182 112-150 (318)
452 COG0529 CysC Adenylylsulfate k 96.2 0.024 5.2E-07 53.7 8.3 58 147-204 21-88 (197)
453 cd02022 DPCK Dephospho-coenzym 96.2 0.0054 1.2E-07 57.3 4.1 28 152-180 2-29 (179)
454 KOG0058 Peptide exporter, ABC 96.1 0.017 3.6E-07 64.6 8.4 28 145-172 490-517 (716)
455 COG5271 MDN1 AAA ATPase contai 96.1 0.065 1.4E-06 64.7 13.2 162 151-333 890-1066(4600)
456 PRK05439 pantothenate kinase; 96.1 0.0088 1.9E-07 61.3 5.7 40 135-174 72-111 (311)
457 COG5245 DYN1 Dynein, heavy cha 96.1 0.028 6.1E-07 67.0 10.1 173 148-342 1493-1689(3164)
458 TIGR03499 FlhF flagellar biosy 96.1 0.019 4.2E-07 57.8 8.0 37 147-183 192-233 (282)
459 PRK10078 ribose 1,5-bisphospho 96.1 0.0051 1.1E-07 57.7 3.6 30 150-179 3-32 (186)
460 COG0606 Predicted ATPase with 96.1 0.0029 6.3E-08 67.7 2.0 45 125-172 175-221 (490)
461 TIGR00235 udk uridine kinase. 96.0 0.0062 1.3E-07 58.1 3.9 28 148-175 5-32 (207)
462 PRK13808 adenylate kinase; Pro 96.0 0.0058 1.3E-07 63.1 4.0 33 152-186 3-35 (333)
463 COG4088 Predicted nucleotide k 96.0 0.013 2.9E-07 56.8 6.1 24 151-174 3-26 (261)
464 COG1066 Sms Predicted ATP-depe 96.0 0.061 1.3E-06 56.9 11.4 151 145-313 89-258 (456)
465 KOG2543 Origin recognition com 96.0 0.13 2.8E-06 54.1 13.6 52 134-185 15-66 (438)
466 PRK13851 type IV secretion sys 96.0 0.0088 1.9E-07 62.1 5.2 70 148-221 161-245 (344)
467 PRK08356 hypothetical protein; 96.0 0.0081 1.8E-07 56.8 4.6 32 150-184 6-37 (195)
468 PF00485 PRK: Phosphoribulokin 96.0 0.0063 1.4E-07 57.5 3.7 24 151-174 1-24 (194)
469 cd01125 repA Hexameric Replica 96.0 0.15 3.2E-06 49.7 13.4 21 152-172 4-24 (239)
470 PF13481 AAA_25: AAA domain; P 96.0 0.026 5.7E-07 52.4 7.8 24 150-173 33-56 (193)
471 COG0467 RAD55 RecA-superfamily 96.0 0.01 2.2E-07 58.7 5.3 40 144-183 18-60 (260)
472 PTZ00202 tuzin; Provisional 96.0 0.051 1.1E-06 58.4 10.6 44 139-182 276-319 (550)
473 COG3284 AcoR Transcriptional a 96.0 0.015 3.2E-07 64.1 6.8 165 150-333 337-527 (606)
474 KOG2680 DNA helicase TIP49, TB 95.9 0.0051 1.1E-07 62.6 3.0 56 148-204 65-122 (454)
475 COG5192 BMS1 GTP-binding prote 95.9 0.015 3.3E-07 63.2 6.7 72 145-220 65-143 (1077)
476 TIGR02322 phosphon_PhnN phosph 95.9 0.0067 1.5E-07 56.1 3.6 25 151-175 3-27 (179)
477 TIGR02655 circ_KaiC circadian 95.9 0.025 5.3E-07 61.3 8.4 40 144-183 258-300 (484)
478 PRK14733 coaE dephospho-CoA ki 95.9 0.0086 1.9E-07 57.8 4.4 32 148-179 5-36 (204)
479 PF02367 UPF0079: Uncharacteri 95.9 0.0087 1.9E-07 53.3 4.1 36 147-182 13-48 (123)
480 PRK14730 coaE dephospho-CoA ki 95.9 0.0082 1.8E-07 57.2 4.3 29 151-179 3-31 (195)
481 TIGR01663 PNK-3'Pase polynucle 95.9 0.018 4E-07 63.0 7.4 58 147-215 367-424 (526)
482 TIGR00017 cmk cytidylate kinas 95.9 0.0091 2E-07 58.0 4.5 30 150-179 3-32 (217)
483 cd01129 PulE-GspE PulE/GspE Th 95.9 0.016 3.4E-07 58.0 6.3 68 151-221 82-158 (264)
484 TIGR00554 panK_bact pantothena 95.9 0.013 2.8E-07 59.5 5.8 39 136-174 49-87 (290)
485 cd02028 UMPK_like Uridine mono 95.9 0.0093 2E-07 56.0 4.4 35 152-186 2-39 (179)
486 cd03239 ABC_SMC_head The struc 95.9 0.044 9.5E-07 51.5 8.9 25 151-175 24-48 (178)
487 PF08423 Rad51: Rad51; InterP 95.9 0.022 4.7E-07 56.7 7.1 83 144-226 33-147 (256)
488 COG2274 SunT ABC-type bacterio 95.9 0.017 3.8E-07 65.3 7.2 27 146-172 496-522 (709)
489 TIGR03263 guanyl_kin guanylate 95.9 0.0062 1.4E-07 56.2 3.1 26 150-175 2-27 (180)
490 PRK09825 idnK D-gluconate kina 95.8 0.0099 2.1E-07 55.7 4.3 27 150-176 4-30 (176)
491 PF10443 RNA12: RNA12 protein; 95.8 0.34 7.3E-06 51.7 16.1 84 317-404 257-344 (431)
492 PRK09302 circadian clock prote 95.8 0.033 7.2E-07 60.5 9.0 83 144-226 268-377 (509)
493 cd03285 ABC_MSH2_euk MutS2 hom 95.8 0.12 2.5E-06 50.4 11.8 26 147-172 28-53 (222)
494 PRK00023 cmk cytidylate kinase 95.8 0.0089 1.9E-07 58.3 4.1 31 149-179 4-34 (225)
495 cd02024 NRK1 Nicotinamide ribo 95.8 0.0084 1.8E-07 57.1 3.8 28 152-179 2-30 (187)
496 COG3283 TyrR Transcriptional r 95.8 0.024 5.3E-07 59.0 7.2 103 152-278 230-344 (511)
497 TIGR01448 recD_rel helicase, p 95.8 0.011 2.4E-07 67.1 5.2 72 150-221 339-425 (720)
498 PRK14021 bifunctional shikimat 95.8 0.014 3.1E-07 64.1 5.8 42 150-193 7-48 (542)
499 PLN02165 adenylate isopentenyl 95.8 0.011 2.4E-07 61.1 4.6 33 149-181 43-75 (334)
500 TIGR03881 KaiC_arch_4 KaiC dom 95.7 0.015 3.3E-07 56.0 5.3 39 144-182 15-56 (229)
No 1
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=100.00 E-value=1.1e-94 Score=733.29 Aligned_cols=406 Identities=73% Similarity=1.119 Sum_probs=383.7
Q ss_pred cCCCCccCCCCCCCCCCCcccccchhhhhcccCCCCCcCCcceeeehhhhhhhhhhhhcccccccccccccccccCCCcc
Q 012383 3 AAVPLSFNGSGAATSVPSSSFFGTSLKKVSSRIPPSKVPSASFKITAEVDENKQTKKDRWKGLAYDESDDQQDITRGKGA 82 (465)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 82 (465)
+.+++++++++++++.|+++|||..+++................+.++.++.+++++++|+++++|.++|||+|++|+||
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~g~g~ 84 (413)
T PLN00020 5 NRASLSLSAVASGASSPPSSAFLGSKVKVSSRRTSSARKSKSSVPVSEEDESKQSEQSSWRGLAQDISGDDYDITRGKGM 84 (413)
T ss_pred cccccccCCCccCCCCCCchhcccccccccccccccccccccccccccccccccccccchhccccccccchhhhhhcCCc
Confidence 45778899999999999999999999998555444555555566778999999999999999999999999999999999
Q ss_pred ccccccCCCCCcchhhhhcccccccccccccccccccCCCCCchhHHHHHHHHHHHhhhhCCCCCCCeEEEEEcCCCCcH
Q 012383 83 VDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGK 162 (465)
Q Consensus 83 ~d~l~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGK 162 (465)
||+||++|+|+|+|.+|+++++|+ .+.++|+|+.++|||+|+|+|++.+||+|||+.++++++|+|+||||||||||
T Consensus 85 vd~lf~~~~~~g~~~~i~~~~~~~---~~~~~f~~~~g~~~~~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGK 161 (413)
T PLN00020 85 VDSLFQGPFGLGTDSDIASSYDYL---QRTRSFDNLVGGYYIAPAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGK 161 (413)
T ss_pred hhhhhcCCccCCcchhhhhhhHHH---hhhcchhhhcCccccCHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCH
Confidence 999999999999999999999887 67778899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCceEEecccccccCCCCChHHHHHHHHHHHHHHH-HhCCceEEEecccccccCCCCCCcccchhhHHH
Q 012383 163 SFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII-KKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMV 241 (465)
Q Consensus 163 T~LAraIA~elg~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i-~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v 241 (465)
|++|++||+++|++|+.+++++|+++|+||++++||++|+.|.+.+ ++.+||||||||||+++++|+ +++.+++++++
T Consensus 162 TllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~-~~~~tv~~qiV 240 (413)
T PLN00020 162 SFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFG-TTQYTVNNQMV 240 (413)
T ss_pred HHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCC-CCCcchHHHHH
Confidence 9999999999999999999999999999999999999999997777 478999999999999999996 66788999999
Q ss_pred HHHHHHhhcCCccccCCCcc-ccCCCCCceEEEEeCCCCCCChhhhcCCCceEEEeCCCHHHHHHHHHHhccCCCCChhH
Q 012383 242 NATLMNIADNPTCVQLPGMY-NKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDD 320 (465)
Q Consensus 242 ~~~Ll~llD~~~~v~l~g~~-~~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~~P~~e~R~~Il~~~l~~~~v~~~~ 320 (465)
..+||+++|+|++++++|.| ..+...+|+||+|||+|+.|||||+|+||||++||+|+.++|.+||+.|+++.+++..+
T Consensus 241 ~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i~lPd~e~R~eIL~~~~r~~~l~~~d 320 (413)
T PLN00020 241 NGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVVHGIFRDDGVSRED 320 (413)
T ss_pred HHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCceeCCCCHHHHHHHHHHHhccCCCCHHH
Confidence 99999999999999999998 45667899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCchhhHHHHHHHhhhhHHHHHHHHHhhcCccchhhhhcCcCCCCCCCCCccCHHHHHHHHHHHHHHhhhhhh
Q 012383 321 IVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKR 400 (465)
Q Consensus 321 la~lt~gfsgadld~~~alra~~~~~~v~~~i~~~~~e~l~~~lv~~~~~~~~f~~~~~~~~~lle~g~~lv~eqe~v~~ 400 (465)
+.++++.|+|++||||||||+++|+++|++||.++|.|+++++++++++++|.|++|.+|++.|+++|+++++||++|++
T Consensus 321 v~~Lv~~f~gq~~Df~GAlrar~yd~~v~~~i~~~g~~~~~~~l~~~~~~~p~f~~~~~t~~~l~~~g~~l~~eq~~v~~ 400 (413)
T PLN00020 321 VVKLVDTFPGQPLDFFGALRARVYDDEVRKWIAEVGVENLGKKLVNSKKGPPTFEPPKMTLEKLLEYGNMLVREQENVKR 400 (413)
T ss_pred HHHHHHcCCCCCchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHhcccc
Q 012383 401 VQLADKYLSEAA 412 (465)
Q Consensus 401 ~~l~~~~l~~~~ 412 (465)
++|+++||++++
T Consensus 401 ~~l~~~y~~~~~ 412 (413)
T PLN00020 401 VQLSDEYLKNAA 412 (413)
T ss_pred HHHHHHHHHhcc
Confidence 999999999864
No 2
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.7e-62 Score=479.61 Aligned_cols=363 Identities=25% Similarity=0.361 Sum_probs=303.8
Q ss_pred CCCccCCCCCCC-CCC--CcccccchhhhhcccCCCC-CcCCcceeeehhhhhh----hhhhhhcccccccccccccccc
Q 012383 5 VPLSFNGSGAAT-SVP--SSSFFGTSLKKVSSRIPPS-KVPSASFKITAEVDEN----KQTKKDRWKGLAYDESDDQQDI 76 (465)
Q Consensus 5 ~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~i 76 (465)
.||..|+++.++ ..+ .+.++++..-|...-.-.- .+-.+...|...++++ |+|++.||- ...+.+.||++|
T Consensus 14 ~~L~~~~~~~~~lka~~~~~r~l~k~~~ksend~kslqsvg~~~gevlk~l~~~~~iVK~s~Gpryv-vg~~~~~D~~~i 92 (388)
T KOG0651|consen 14 KPLLSHRSISSALKALRENSRFLGKKYDKSENDLKSLQSVGQIIGEVLKQLEDEKFIVKASSGPRYV-VGCRRSVDKEKI 92 (388)
T ss_pred hhhhhccchhhHHHhHHHHHHHHhhhcCcccchHHHhhhcCchhHHHHhhccccceEeecCCCCcEE-EEcccccchhhh
Confidence 367777777666 444 5666665554442221111 1222234566555543 789999999 889999999999
Q ss_pred cCCCccccccccCCCCCcchhhhhcccccccccccccccccccCCCCCchhHHHHHHHHHHHhhhhCC-CCCCCeEEEEE
Q 012383 77 TRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLP-NIKVPLILGIW 155 (465)
Q Consensus 77 ~~~~~~~d~l~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~-~~~~p~glLL~ 155 (465)
++|+++++++|+-+++.+.+.++...++|.++..++++|+++.|.+|+.++|+|++.+|+.++++.++ |+++|+|+|||
T Consensus 93 ~~G~rv~ldittltIm~~lprevd~vy~m~~e~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~ 172 (388)
T KOG0651|consen 93 ARGTRVVLDITTLTIMRGLPREVDLVYNMSHEDPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLY 172 (388)
T ss_pred ccCceeeeeeeeeehhcccchHHHHHHHhhhcCccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEe
Confidence 99999999999999999999999888999999999999999999999999999999999999999987 99999999999
Q ss_pred cCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccc
Q 012383 156 GGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYT 235 (465)
Q Consensus 156 GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~ 235 (465)
||||||||++|++||..+|++|+.+++++|+++|+||+.++||+.|++| +...|||||+||||++.++| .++.+
T Consensus 173 GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlIRemf~yA----~~~~pciifmdeiDAigGRr--~se~T 246 (388)
T KOG0651|consen 173 GPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGESARLIRDMFRYA----REVIPCIIFMDEIDAIGGRR--FSEGT 246 (388)
T ss_pred CCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcccHHHHHHHHHHHH----hhhCceEEeehhhhhhccEE--ecccc
Confidence 9999999999999999999999999999999999999999999999999 88999999999999999999 47899
Q ss_pred hhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhhcCCCceEEEe--CCCHHHHHHHHHHhccC
Q 012383 236 VNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRN 313 (465)
Q Consensus 236 v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~--~P~~e~R~~Il~~~l~~ 313 (465)
+++++++.|||+|+| ||+|+ ....+|++|+|||+|+.|||||+||||+|++|| +|+...|..|++.|.
T Consensus 247 s~dreiqrTLMeLln-----qmdgf---d~l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~-- 316 (388)
T KOG0651|consen 247 SSDREIQRTLMELLN-----QMDGF---DTLHRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHV-- 316 (388)
T ss_pred chhHHHHHHHHHHHH-----hhccc---hhcccccEEEecCCccccchhhcCCccccceeccCCcchhhceeeEeecc--
Confidence 999999999999999 77776 888999999999999999999999999999999 899999998765554
Q ss_pred CCCChhHHHHHhcCCCchhhHHHHHHHhhhhHHHHHHHHHhhcCccchhhhhcCcCCCCCCCCCccCHHHHHHHHHHHHH
Q 012383 314 DNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQ 393 (465)
Q Consensus 314 ~~v~~~~la~lt~gfsgadld~~~alra~~~~~~v~~~i~~~~~e~l~~~lv~~~~~~~~f~~~~~~~~~lle~g~~lv~ 393 (465)
+.|+|+|+++ +++|.+|....+...+.. ... ..|.|..+.++.+.++|++..+|+
T Consensus 317 -----------------~~i~~~Geid----~eaivK~~d~f~gad~rn---~~t-Eag~Fa~~~~~~~vl~Ed~~k~vr 371 (388)
T KOG0651|consen 317 -----------------QPIDFHGEID----DEAILKLVDGFNGADLRN---VCT-EAGMFAIPEERDEVLHEDFMKLVR 371 (388)
T ss_pred -----------------cccccccccc----HHHHHHHHhccChHHHhh---hcc-cccccccchhhHHHhHHHHHHHHH
Confidence 4444444444 444444444443222111 011 135889999999999999999999
Q ss_pred HhhhhhhhhhHHHHhc
Q 012383 394 EQENVKRVQLADKYLS 409 (465)
Q Consensus 394 eqe~v~~~~l~~~~l~ 409 (465)
||.+++++++...|++
T Consensus 372 k~~~~kkle~~~~Y~~ 387 (388)
T KOG0651|consen 372 KQADAKKLELSLDYKK 387 (388)
T ss_pred HHHHHHHhhhhhhhcc
Confidence 9999999999999984
No 3
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-47 Score=382.70 Aligned_cols=179 Identities=23% Similarity=0.334 Sum_probs=168.6
Q ss_pred CCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccc
Q 012383 143 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 222 (465)
Q Consensus 143 ~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEID 222 (465)
..|++||+|||||||||||||+||||||++.++.|+.+.+|+|..+|+||..+++|++|+.| +.++||||||||||
T Consensus 179 ~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lA----rekaPsIIFiDEID 254 (406)
T COG1222 179 ELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELA----REKAPSIIFIDEID 254 (406)
T ss_pred HcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHH----hhcCCeEEEEechh
Confidence 34999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred cccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhhcCCCceEEEe--CCCH
Q 012383 223 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 300 (465)
Q Consensus 223 ai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~--~P~~ 300 (465)
+|+++|. ...+..++.++.|+|+||+ ||||+ ....+|-||++|||++.|||||+||||||++|+ +|+.
T Consensus 255 AIg~kR~--d~~t~gDrEVQRTmleLL~-----qlDGF---D~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~ 324 (406)
T COG1222 255 AIGAKRF--DSGTSGDREVQRTMLELLN-----QLDGF---DPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDE 324 (406)
T ss_pred hhhcccc--cCCCCchHHHHHHHHHHHH-----hccCC---CCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCH
Confidence 9999986 3345678999999999999 99999 788999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHhccCC----CCChhHHHHHhcCCCchhhHH
Q 012383 301 EDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF 335 (465)
Q Consensus 301 e~R~~Il~~~l~~~----~v~~~~la~lt~gfsgadld~ 335 (465)
+.|.+|++.|.++. +++.+.+++++++||||+|..
T Consensus 325 ~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlka 363 (406)
T COG1222 325 EGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKA 363 (406)
T ss_pred HHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHH
Confidence 99999999999864 677889999999999999863
No 4
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-45 Score=382.27 Aligned_cols=291 Identities=18% Similarity=0.290 Sum_probs=240.5
Q ss_pred CCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCC-ceEEecccccccCCCCChHHHHHHHHHHHHHHHH----hCCceEEE
Q 012383 143 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI-NPIMMSAGELESGNAGEPAKLIRQRYREAADIIK----KGKMCCLM 217 (465)
Q Consensus 143 ~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~-~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~----~~~p~ILf 217 (465)
..|++..+|+|||||||||||++||.|.+.++. ++-.|++++++++|+|+++.+||.+|..|.+.-+ .+...||+
T Consensus 250 ~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIII 329 (744)
T KOG0741|consen 250 QLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIII 329 (744)
T ss_pred HcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEE
Confidence 459999999999999999999999999999976 7888999999999999999999999999977666 45578999
Q ss_pred ecccccccCCCCCCcc-cchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhhcCCCceEEEe
Q 012383 218 INDLDAGAGRMGGTTQ-YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW 296 (465)
Q Consensus 218 IDEIDai~~~r~~~~~-~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~ 296 (465)
|||||++|.+|+.... ..|.++.++++|. .|||. +...+|.||+.|||.+.||+||+|||||+..++
T Consensus 330 FDEiDAICKqRGS~~g~TGVhD~VVNQLLs---------KmDGV---eqLNNILVIGMTNR~DlIDEALLRPGRlEVqmE 397 (744)
T KOG0741|consen 330 FDEIDAICKQRGSMAGSTGVHDTVVNQLLS---------KMDGV---EQLNNILVIGMTNRKDLIDEALLRPGRLEVQME 397 (744)
T ss_pred ehhhHHHHHhcCCCCCCCCccHHHHHHHHH---------hcccH---HhhhcEEEEeccCchhhHHHHhcCCCceEEEEE
Confidence 9999999999973322 4556666666552 34455 888999999999999999999999999999999
Q ss_pred --CCCHHHHHHHHHHhccC--------CCCChhHHHHHhcCCCchhhHHHHHHHhhhhHHHHHHHHHhh-----cCccch
Q 012383 297 --APTREDRIGVCKGIFRN--------DNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGV-----GVGSIG 361 (465)
Q Consensus 297 --~P~~e~R~~Il~~~l~~--------~~v~~~~la~lt~gfsgadld~~~alra~~~~~~v~~~i~~~-----~~e~l~ 361 (465)
+|+++.|++|++.|++. .+++.++|+.+|..|||++|+ |.+|++.. -++.+.++.- ..+++.
T Consensus 398 IsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEle--glVksA~S-~A~nR~vk~~~~~~~~~~~~e 474 (744)
T KOG0741|consen 398 ISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELE--GLVKSAQS-FAMNRHVKAGGKVEVDPVAIE 474 (744)
T ss_pred EeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHH--HHHHHHHH-HHHHhhhccCcceecCchhhh
Confidence 99999999999998853 578889999999999999998 67777764 3455555443 223333
Q ss_pred hhhhcCc-------CCCCCCCCCcc---------------CHHHHHHHHHHHHHHhhhhhhhhhHHHHhccccCCCchhh
Q 012383 362 KSLVNSK-------EAAPTFEQPRM---------------TMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANED 419 (465)
Q Consensus 362 ~~lv~~~-------~~~~~f~~~~~---------------~~~~lle~g~~lv~eqe~v~~~~l~~~~l~~~~l~~~~~~ 419 (465)
..-|++. +..|.|+.... .+..+++.|.++|++.++..+..+++.++.|++. .++|
T Consensus 475 ~lkV~r~DFl~aL~dVkPAFG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~--sGKT 552 (744)
T KOG0741|consen 475 NLKVTRGDFLNALEDVKPAFGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPG--SGKT 552 (744)
T ss_pred heeecHHHHHHHHHhcCcccCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCC--CChH
Confidence 3333332 35788876544 3678889999999999999999999999999633 2444
Q ss_pred hhhhcchhhhhhhhCCCCCCCCCCCcccccCCCCCc
Q 012383 420 AIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTAR 455 (465)
Q Consensus 420 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (465)
| +|+++|..|+|||+|+|+|++|.-|.++|+
T Consensus 553 a-----LAA~iA~~S~FPFvKiiSpe~miG~sEsaK 583 (744)
T KOG0741|consen 553 A-----LAAKIALSSDFPFVKIISPEDMIGLSESAK 583 (744)
T ss_pred H-----HHHHHHhhcCCCeEEEeChHHccCccHHHH
Confidence 4 999999999999999999999999888775
No 5
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-44 Score=377.34 Aligned_cols=265 Identities=22% Similarity=0.303 Sum_probs=209.6
Q ss_pred ccccccCCCCCchhHHHHHHHHHHHhhh-hCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCC
Q 012383 114 NLDNTIDGLYIAPAFMDKLVVHITKNFM-SLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGE 192 (465)
Q Consensus 114 ~~~~~~~~~~i~~~~~d~~~~~i~k~~l-~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge 192 (465)
+|+++.+-..|..++++.++..|.+.-+ +..|+..|-|||||||||||||+||+|||+|.|++|+.|++++|+++|+||
T Consensus 509 tW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGE 588 (802)
T KOG0733|consen 509 TWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGE 588 (802)
T ss_pred ChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhh
Confidence 5577777777777777777777766554 467999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEE
Q 012383 193 PAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 272 (465)
Q Consensus 193 ~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI 272 (465)
+++.+|++|.+| +.++||||||||||+++++|+. ....+..++++++| ++|||. +.+.+|+||
T Consensus 589 SErAVR~vFqRA----R~saPCVIFFDEiDaL~p~R~~-~~s~~s~RvvNqLL---------tElDGl---~~R~gV~vi 651 (802)
T KOG0733|consen 589 SERAVRQVFQRA----RASAPCVIFFDEIDALVPRRSD-EGSSVSSRVVNQLL---------TELDGL---EERRGVYVI 651 (802)
T ss_pred HHHHHHHHHHHh----hcCCCeEEEecchhhcCcccCC-CCchhHHHHHHHHH---------HHhccc---ccccceEEE
Confidence 999999999999 9999999999999999999973 33567778888766 255566 889999999
Q ss_pred EEeCCCCCCChhhhcCCCceEEEe--CCCHHHHHHHHHHhcc--C----CCCChhHHHHHhc--CCCchhhHHHHHHHhh
Q 012383 273 VTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFR--N----DNVADDDIVKLVD--TFPGQSIDFFGALRAR 342 (465)
Q Consensus 273 ~TTN~~~~LD~ALlR~GRfd~~i~--~P~~e~R~~Il~~~l~--~----~~v~~~~la~lt~--gfsgadld~~~alra~ 342 (465)
++||||+.||||+|||||||+.++ +|+.++|.+|++.+++ + .+++.++|++.+. ||+|+||..+ +|.+
T Consensus 652 aATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaL--vreA 729 (802)
T KOG0733|consen 652 AATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAAL--VREA 729 (802)
T ss_pred eecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHH--HHHH
Confidence 999999999999999999999999 9999999999999998 2 4677889999988 9999999632 2322
Q ss_pred hhHHHHHHHHHhhcC--ccchhhhhcCcCCCCCCCCCccCHHHHHHHHHHH---HHHhhhhhhhhhHHHHh
Q 012383 343 VYDDEVRKWISGVGV--GSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMI---VQEQENVKRVQLADKYL 408 (465)
Q Consensus 343 ~~~~~v~~~i~~~~~--e~l~~~lv~~~~~~~~f~~~~~~~~~lle~g~~l---v~eqe~v~~~~l~~~~l 408 (465)
. -.++++-+.+... +.+... ..+..+|..++-++-..+ |.|++..++-++...|-
T Consensus 730 s-i~AL~~~~~~~~~~~~~~~~~----------~~~~~~t~~hF~eA~~~i~pSv~~~dr~~Yd~l~k~~~ 789 (802)
T KOG0733|consen 730 S-ILALRESLFEIDSSEDDVTVR----------SSTIIVTYKHFEEAFQRIRPSVSERDRKKYDRLNKSRS 789 (802)
T ss_pred H-HHHHHHHHhhccccCccccee----------eeeeeecHHHHHHHHHhcCCCccHHHHHHHHHHhhhhc
Confidence 2 2233433333211 111110 002235555666666554 68888877777766653
No 6
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.9e-43 Score=343.01 Aligned_cols=257 Identities=21% Similarity=0.332 Sum_probs=218.7
Q ss_pred hhhhhhhhhhhcccccccccccccccccCCCccccccccCCCCCcchhhhhccc-ccccccccccccccccCCCCCch-h
Q 012383 50 EVDENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSY-DYISQGLRTYNLDNTIDGLYIAP-A 127 (465)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~d~l~~~~~~~g~~~~~~~~~-~~~~~~~r~~~~~~~~~~~~i~~-~ 127 (465)
-|+||+.+||++.++++..++ .++..||+|.+.||..|+.++++.+. ..++ .....+||++- .
T Consensus 73 LMEEEFI~NQe~~k~~e~~~e-------e~r~~vd~lRGtPmsvg~leEiidd~haivs--------t~~g~e~Yv~IlS 137 (440)
T KOG0726|consen 73 LMEEEFIRNQERLKPQEEKQE-------EERSKVDDLRGTPMSVGTLEEIIDDNHAIVS--------TSVGSEYYVSILS 137 (440)
T ss_pred HHHHHHHhhccccCCchhhhH-------HHHhHHHhhcCCccccccHHHHhcCCceEEe--------cccCchheeeeee
Confidence 389999999999999999887 67799999999999999999998764 3333 23333444444 3
Q ss_pred HHHHH--------------------------------------------------HHHHHHhhhhC----------CCCC
Q 012383 128 FMDKL--------------------------------------------------VVHITKNFMSL----------PNIK 147 (465)
Q Consensus 128 ~~d~~--------------------------------------------------~~~i~k~~l~~----------~~~~ 147 (465)
|.|+- ..+..|..+.+ .|++
T Consensus 138 fVdKdlLepgcsvll~~k~~avvGvL~d~~dpmv~vmK~eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGik 217 (440)
T KOG0726|consen 138 FVDKDLLEPGCSVLLNHKVHAVVGVLQDDTDPMVSVMKVEKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIK 217 (440)
T ss_pred eccHhhcCCCCeeeeccccceEEEEeccCCCccceeeecccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCC
Confidence 44431 11223433333 3999
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCC
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGR 227 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~ 227 (465)
||+||+|||+||||||+||+|||+...+.|+.+-+++|+.+|.|+..+++|++|+.| ..++|+|+||||||++..+
T Consensus 218 pPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGpklvRqlF~vA----~e~apSIvFiDEIdAiGtK 293 (440)
T KOG0726|consen 218 PPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVA----EEHAPSIVFIDEIDAIGTK 293 (440)
T ss_pred CCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccchHHHHHHHHHH----HhcCCceEEeehhhhhccc
Confidence 999999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred CCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhhcCCCceEEEe--CCCHHHHHH
Q 012383 228 MGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIG 305 (465)
Q Consensus 228 r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~--~P~~e~R~~ 305 (465)
|.++ .+...+.+++++++||+ |++|+ ..+..|-||++||+.+.|||||+||||+|+.|+ +|+...+..
T Consensus 294 Ryds--~SggerEiQrtmLELLN-----QldGF---dsrgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~Tkkk 363 (440)
T KOG0726|consen 294 RYDS--NSGGEREIQRTMLELLN-----QLDGF---DSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKK 363 (440)
T ss_pred cccC--CCccHHHHHHHHHHHHH-----hccCc---cccCCeEEEEecccccccCHhhcCCCccccccccCCCchhhhce
Confidence 8733 34567899999999999 99999 778999999999999999999999999999999 999999999
Q ss_pred HHHHhccC----CCCChhHHHHHhcCCCchhhHH
Q 012383 306 VCKGIFRN----DNVADDDIVKLVDTFPGQSIDF 335 (465)
Q Consensus 306 Il~~~l~~----~~v~~~~la~lt~gfsgadld~ 335 (465)
|+..|... ..++.+++..--+.|||+||..
T Consensus 364 If~IHTs~Mtl~~dVnle~li~~kddlSGAdIkA 397 (440)
T KOG0726|consen 364 IFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKA 397 (440)
T ss_pred eEEEeecccchhccccHHHHhhcccccccccHHH
Confidence 99888765 4667778888889999999974
No 7
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-42 Score=367.12 Aligned_cols=204 Identities=21% Similarity=0.347 Sum_probs=173.4
Q ss_pred ccccccCCCCCchhHHHHHHHHHHHhhhh-CCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCC
Q 012383 114 NLDNTIDGLYIAPAFMDKLVVHITKNFMS-LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGE 192 (465)
Q Consensus 114 ~~~~~~~~~~i~~~~~d~~~~~i~k~~l~-~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge 192 (465)
+|+++.|-..+..++.+-+.+.+.....+ ..|+.||+|||||||||||||++||++|++++++|+.+++++|+++|+|+
T Consensus 432 ~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGe 511 (693)
T KOG0730|consen 432 SWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGE 511 (693)
T ss_pred ChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCc
Confidence 45666655555555544444333222221 35899999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEE
Q 012383 193 PAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 272 (465)
Q Consensus 193 ~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI 272 (465)
+|+.||++|++| +...||||||||||++++.|+++.. .+.++.++++| + +|||+ +...+|+||
T Consensus 512 SEr~ir~iF~kA----R~~aP~IiFfDEiDsi~~~R~g~~~-~v~~RVlsqLL-t--------EmDG~---e~~k~V~Vi 574 (693)
T KOG0730|consen 512 SERAIREVFRKA----RQVAPCIIFFDEIDALAGSRGGSSS-GVTDRVLSQLL-T--------EMDGL---EALKNVLVI 574 (693)
T ss_pred hHHHHHHHHHHH----hhcCCeEEehhhHHhHhhccCCCcc-chHHHHHHHHH-H--------Hcccc---cccCcEEEE
Confidence 999999999999 9999999999999999999974443 77777777655 2 45577 788999999
Q ss_pred EEeCCCCCCChhhhcCCCceEEEe--CCCHHHHHHHHHHhccCCC----CChhHHHHHhcCCCchhhH
Q 012383 273 VTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDN----VADDDIVKLVDTFPGQSID 334 (465)
Q Consensus 273 ~TTN~~~~LD~ALlR~GRfd~~i~--~P~~e~R~~Il~~~l~~~~----v~~~~la~lt~gfsgadld 334 (465)
++||||+.||+||+||||||+.+| +|+.+.|.+|++.++++.+ ++.+.|++.|++|||+||.
T Consensus 575 AATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~ 642 (693)
T KOG0730|consen 575 AATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIV 642 (693)
T ss_pred eccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHH
Confidence 999999999999999999999999 9999999999999998754 5667999999999999985
No 8
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.1e-42 Score=367.20 Aligned_cols=268 Identities=20% Similarity=0.307 Sum_probs=210.8
Q ss_pred ccccCCCCCchhHHHHHHHHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCChHH
Q 012383 116 DNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAK 195 (465)
Q Consensus 116 ~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge~~k 195 (465)
+.+.|-..++.+++|-+.+.....-|...|.++.-|||||||||||||++|||||.|+.++|+.|++++|+++|+|++|.
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGqSE~ 751 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQSEE 751 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhcchHH
Confidence 44444333333444444333333444456889889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCceEEEecccccccCCCC-CCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEE
Q 012383 196 LIRQRYREAADIIKKGKMCCLMINDLDAGAGRMG-GTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVT 274 (465)
Q Consensus 196 ~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~-~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~T 274 (465)
++|++|++| +..+||||||||||++++.|+ .+.+..|.++.|.|+|. ++||+... ....|+||++
T Consensus 752 NVR~VFerA----R~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLA---------ELDgls~~-~s~~VFViGA 817 (953)
T KOG0736|consen 752 NVREVFERA----RSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLA---------ELDGLSDS-SSQDVFVIGA 817 (953)
T ss_pred HHHHHHHHh----hccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHH---------HhhcccCC-CCCceEEEec
Confidence 999999999 999999999999999999998 34467889999998884 55577433 5688999999
Q ss_pred eCCCCCCChhhhcCCCceEEEe---CCCHHHHHHHHHHhccCC----CCChhHHHHHhc-CCCchhhHHHHHHHhhhhHH
Q 012383 275 GNDFSTLYAPLIRDGRMEKFYW---APTREDRIGVCKGIFRND----NVADDDIVKLVD-TFPGQSIDFFGALRARVYDD 346 (465)
Q Consensus 275 TN~~~~LD~ALlR~GRfd~~i~---~P~~e~R~~Il~~~l~~~----~v~~~~la~lt~-gfsgadld~~~alra~~~~~ 346 (465)
||||+.|||||+||||||+.+| .-+.+.+..|+++..++. +++..+|++.++ .|+|||+ .+|++...-.
T Consensus 818 TNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADl---YsLCSdA~l~ 894 (953)
T KOG0736|consen 818 TNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADL---YSLCSDAMLA 894 (953)
T ss_pred CCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHH---HHHHHHHHHH
Confidence 9999999999999999999999 446777899999988765 555668887765 8999997 5788877777
Q ss_pred HHHHHHHhhcCccchhhhhcCcCCCCCCCCCccCHHHHHHHHHHH---HHHhhhhhhhhhHHHH
Q 012383 347 EVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMI---VQEQENVKRVQLADKY 407 (465)
Q Consensus 347 ~v~~~i~~~~~e~l~~~lv~~~~~~~~f~~~~~~~~~lle~g~~l---v~eqe~v~~~~l~~~~ 407 (465)
++++-++.+..+.+.. ++ ..-....++.++++++...+ +.|||...+..+..+|
T Consensus 895 AikR~i~~ie~g~~~~-----~e--~~~~~v~V~~eDflks~~~l~PSvS~~EL~~ye~vr~~f 951 (953)
T KOG0736|consen 895 AIKRTIHDIESGTISE-----EE--QESSSVRVTMEDFLKSAKRLQPSVSEQELLRYEMVRAQF 951 (953)
T ss_pred HHHHHHHHhhhccccc-----cc--cCCceEEEEHHHHHHHHHhcCCcccHHHHHHHHHHHHhh
Confidence 8888777765544433 11 11123567889999999887 6788877666665554
No 9
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-41 Score=352.69 Aligned_cols=246 Identities=22% Similarity=0.293 Sum_probs=193.4
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEeccccc
Q 012383 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA 223 (465)
Q Consensus 144 ~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDa 223 (465)
.|.+.|+||||.||||||||+||||||.|.|++|+..+++++...|+|...+.+|++|..| +..+||||||||||+
T Consensus 332 LGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VGvGArRVRdLF~aA----k~~APcIIFIDEiDa 407 (752)
T KOG0734|consen 332 LGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVGVGARRVRDLFAAA----KARAPCIIFIDEIDA 407 (752)
T ss_pred ccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhcccHHHHHHHHHHH----HhcCCeEEEEechhh
Confidence 4899999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred ccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhhcCCCceEEEe--CCCHH
Q 012383 224 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 301 (465)
Q Consensus 224 i~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~--~P~~e 301 (465)
+.++|....+. ..++.++++| ++|||+ .++.+|+||++||.|+.||+||+||||||+++. .||..
T Consensus 408 vG~kR~~~~~~-y~kqTlNQLL---------vEmDGF---~qNeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~ 474 (752)
T KOG0734|consen 408 VGGKRNPSDQH-YAKQTLNQLL---------VEMDGF---KQNEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVR 474 (752)
T ss_pred hcccCCccHHH-HHHHHHHHHH---------HHhcCc---CcCCceEEEeccCChhhhhHHhcCCCccceeEecCCCCcc
Confidence 99999744443 6666666666 477899 888999999999999999999999999999999 99999
Q ss_pred HHHHHHHHhccC----CCCChhHHHHHhcCCCchhhHHH---HHHHhhhhHHH-----HHHHHHhhcCccchhhhhcCcC
Q 012383 302 DRIGVCKGIFRN----DNVADDDIVKLVDTFPGQSIDFF---GALRARVYDDE-----VRKWISGVGVGSIGKSLVNSKE 369 (465)
Q Consensus 302 ~R~~Il~~~l~~----~~v~~~~la~lt~gfsgadld~~---~alra~~~~~~-----v~~~i~~~~~e~l~~~lv~~~~ 369 (465)
.|.+|++.|+.+ .++|.+-|++=|.||+|+||+.. .||+|++-... -.+|-+. +++-..+
T Consensus 475 GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dga~~VtM~~LE~akD--------rIlMG~E 546 (752)
T KOG0734|consen 475 GRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDGAEMVTMKHLEFAKD--------RILMGPE 546 (752)
T ss_pred cHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcCcccccHHHHhhhhh--------heeeccc
Confidence 999999999865 47778899999999999999864 45555442211 1122222 1221111
Q ss_pred CCCCC-CCCccCHHHHHHHHHHHHHH-hhhhhhhhhHHHHhccccCC
Q 012383 370 AAPTF-EQPRMTMEKLLEYGNMIVQE-QENVKRVQLADKYLSEAALG 414 (465)
Q Consensus 370 ~~~~f-~~~~~~~~~lle~g~~lv~e-qe~v~~~~l~~~~l~~~~l~ 414 (465)
....| ....-++.++||.||.+|.- .+......-+....+|++||
T Consensus 547 Rks~~i~~eak~~TAyHE~GHAivA~yTk~A~PlhKaTImPRG~sLG 593 (752)
T KOG0734|consen 547 RKSMVIDEEAKKITAYHEGGHAIVALYTKGAMPLHKATIMPRGPSLG 593 (752)
T ss_pred ccccccChhhhhhhhhhccCceEEEeecCCCccccceeeccCCcccc
Confidence 11222 23355789999999988643 22223333445566666654
No 10
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-39 Score=342.52 Aligned_cols=206 Identities=23% Similarity=0.329 Sum_probs=170.0
Q ss_pred HHHHHHH-hhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCChHHHHHHHHHHHHHHHHh
Q 012383 132 LVVHITK-NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 210 (465)
Q Consensus 132 ~~~~i~k-~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~ 210 (465)
++.||.. +.+...|+.||+|||||||||||||+||++||+++|++|+.++++++++++.||+++.||++|++| +.
T Consensus 205 li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGESEkkiRelF~~A----~~ 280 (802)
T KOG0733|consen 205 LIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESEKKIRELFDQA----KS 280 (802)
T ss_pred HHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCcccHHHHHHHHHHH----hc
Confidence 4445432 344567999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred CCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhhcCCC
Q 012383 211 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 290 (465)
Q Consensus 211 ~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GR 290 (465)
..|||+||||||+|.++|.. .+ ....+.+.+.|+..||+..+.. .....|+||+|||||+.|||||+|+||
T Consensus 281 ~aPcivFiDeIDAI~pkRe~-aq-reMErRiVaQLlt~mD~l~~~~-------~~g~~VlVIgATnRPDslDpaLRRaGR 351 (802)
T KOG0733|consen 281 NAPCIVFIDEIDAITPKREE-AQ-REMERRIVAQLLTSMDELSNEK-------TKGDPVLVIGATNRPDSLDPALRRAGR 351 (802)
T ss_pred cCCeEEEeecccccccchhh-HH-HHHHHHHHHHHHHhhhcccccc-------cCCCCeEEEecCCCCcccCHHHhcccc
Confidence 99999999999999999973 33 4444445556667777332221 124679999999999999999999999
Q ss_pred ceEEEe--CCCHHHHHHHHHHhccCC----CCChhHHHHHhcCCCchhhHHHHHHHhhhhHHHHHHHHH
Q 012383 291 MEKFYW--APTREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWIS 353 (465)
Q Consensus 291 fd~~i~--~P~~e~R~~Il~~~l~~~----~v~~~~la~lt~gfsgadld~~~alra~~~~~~v~~~i~ 353 (465)
||+.|. .|++.+|.+||+.+.+.. +++.+.||++|.||.|+||. ||+.....-+|++.++
T Consensus 352 FdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~---AL~~~Aa~vAikR~ld 417 (802)
T KOG0733|consen 352 FDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLM---ALCREAAFVAIKRILD 417 (802)
T ss_pred ccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHH---HHHHHHHHHHHHHHhh
Confidence 999999 999999999999988743 66778999999999999996 3444333445666554
No 11
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-37 Score=339.13 Aligned_cols=207 Identities=20% Similarity=0.269 Sum_probs=168.5
Q ss_pred cccccCCCCCchhHHHHHHHHHHHhhh--hCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCC
Q 012383 115 LDNTIDGLYIAPAFMDKLVVHITKNFM--SLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGE 192 (465)
Q Consensus 115 ~~~~~~~~~i~~~~~d~~~~~i~k~~l--~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge 192 (465)
|.++.|-.....++++ +++..||-. ...|+++|+|+||+||||||||+||||+|.|.|+||+.+++++++..++|.
T Consensus 310 FkDVAG~deAK~El~E--~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~ 387 (774)
T KOG0731|consen 310 FKDVAGVDEAKEELME--FVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGV 387 (774)
T ss_pred cccccCcHHHHHHHHH--HHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhccc
Confidence 4444444444444443 223333322 245999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEE
Q 012383 193 PAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 272 (465)
Q Consensus 193 ~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI 272 (465)
...++|++|..| +..+||||||||||++.+.|++. .....++.-.+||.+|+- +|||+ .....|+||
T Consensus 388 ~asrvr~lf~~a----r~~aP~iifideida~~~~r~G~-~~~~~~~e~e~tlnQll~-----emDgf---~~~~~vi~~ 454 (774)
T KOG0731|consen 388 GASRVRDLFPLA----RKNAPSIIFIDEIDAVGRKRGGK-GTGGGQDEREQTLNQLLV-----EMDGF---ETSKGVIVL 454 (774)
T ss_pred chHHHHHHHHHh----hccCCeEEEeccccccccccccc-ccCCCChHHHHHHHHHHH-----HhcCC---cCCCcEEEE
Confidence 999999999999 99999999999999999999521 111223333445545544 88888 667889999
Q ss_pred EEeCCCCCCChhhhcCCCceEEEe--CCCHHHHHHHHHHhccCCCCC-----hhHHHHHhcCCCchhhHHH
Q 012383 273 VTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNVA-----DDDIVKLVDTFPGQSIDFF 336 (465)
Q Consensus 273 ~TTN~~~~LD~ALlR~GRfd~~i~--~P~~e~R~~Il~~~l~~~~v~-----~~~la~lt~gfsgadld~~ 336 (465)
++||+++.||+||+||||||+.+. +|+..+|.+|++.|++...++ ...|+.+|.||+|+||.++
T Consensus 455 a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~ 525 (774)
T KOG0731|consen 455 AATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANL 525 (774)
T ss_pred eccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhh
Confidence 999999999999999999999999 999999999999999876553 3479999999999999875
No 12
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-36 Score=308.40 Aligned_cols=197 Identities=24% Similarity=0.317 Sum_probs=165.5
Q ss_pred CCCCC-eEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEeccccc
Q 012383 145 NIKVP-LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA 223 (465)
Q Consensus 145 ~~~~p-~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDa 223 (465)
|+..| +|||++||||||||+||+|||.|+|..|+.|+.+.|.++|-|++++++|-+|+.| +..+|++|||||||+
T Consensus 240 GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKwRGeSEKlvRlLFemA----RfyAPStIFiDEIDs 315 (491)
T KOG0738|consen 240 GIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKWRGESEKLVRLLFEMA----RFYAPSTIFIDEIDS 315 (491)
T ss_pred hcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhhhccchHHHHHHHHHHH----HHhCCceeehhhHHH
Confidence 56555 9999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred ccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCC-CCceEEEEeCCCCCCChhhhcCCCceEEEe--CCCH
Q 012383 224 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEEN-PRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 300 (465)
Q Consensus 224 i~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~-~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~--~P~~ 300 (465)
|+.+|++.+......+.-+++| |||||+-+.... ..|+|+++||.||.||+||+| ||++.|+ +|+.
T Consensus 316 lcs~RG~s~EHEaSRRvKsELL---------vQmDG~~~t~e~~k~VmVLAATN~PWdiDEAlrR--RlEKRIyIPLP~~ 384 (491)
T KOG0738|consen 316 LCSQRGGSSEHEASRRVKSELL---------VQMDGVQGTLENSKVVMVLAATNFPWDIDEALRR--RLEKRIYIPLPDA 384 (491)
T ss_pred HHhcCCCccchhHHHHHHHHHH---------HHhhccccccccceeEEEEeccCCCcchHHHHHH--HHhhheeeeCCCH
Confidence 9999986555444445555444 466687655444 568999999999999999999 9999999 9999
Q ss_pred HHHHHHHHHhccC----CCCChhHHHHHhcCCCchhhHHHHHHHhhhhHHHHHHHHHhhcCcc
Q 012383 301 EDRIGVCKGIFRN----DNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGS 359 (465)
Q Consensus 301 e~R~~Il~~~l~~----~~v~~~~la~lt~gfsgadld~~~alra~~~~~~v~~~i~~~~~e~ 359 (465)
+.|..+++..++. ++++.++|++.++||||+||..+ |.-..-..+|+.+.....+.
T Consensus 385 ~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nv---CreAsm~~mRR~i~g~~~~e 444 (491)
T KOG0738|consen 385 EARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNV---CREASMMAMRRKIAGLTPRE 444 (491)
T ss_pred HHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHH---HHHHHHHHHHHHHhcCCcHH
Confidence 9999999999875 46667899999999999999743 33333445677776654443
No 13
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-37 Score=329.23 Aligned_cols=256 Identities=20% Similarity=0.243 Sum_probs=198.0
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccc
Q 012383 145 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAG 224 (465)
Q Consensus 145 ~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai 224 (465)
|.+.|+|+||+||||||||+||+++|.+.+++|+.+|++++...++|-+.+.+|++|.+| ++.+||||||||||++
T Consensus 179 GakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGvGAsRVRdLF~qA----kk~aP~IIFIDEiDAv 254 (596)
T COG0465 179 GAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQA----KKNAPCIIFIDEIDAV 254 (596)
T ss_pred ccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCCCcHHHHHHHHHh----hccCCCeEEEehhhhc
Confidence 779999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred cCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhhcCCCceEEEe--CCCHHH
Q 012383 225 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRED 302 (465)
Q Consensus 225 ~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~--~P~~e~ 302 (465)
...|+.+ ....+....+||.+++- +|||+ ..+..|.||++||||+.||+||+||||||+.+. .|+...
T Consensus 255 Gr~Rg~g--~GggnderEQTLNQlLv-----EmDGF---~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~g 324 (596)
T COG0465 255 GRQRGAG--LGGGNDEREQTLNQLLV-----EMDGF---GGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKG 324 (596)
T ss_pred ccccCCC--CCCCchHHHHHHHHHHh-----hhccC---CCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhh
Confidence 9998633 33344555566655554 88888 677899999999999999999999999999999 999999
Q ss_pred HHHHHHHhccCCC----CChhHHHHHhcCCCchhhHHHHHHHhhhhHHHHHHHHHhhcCccchhhhhcCcCCCC-CCCCC
Q 012383 303 RIGVCKGIFRNDN----VADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAP-TFEQP 377 (465)
Q Consensus 303 R~~Il~~~l~~~~----v~~~~la~lt~gfsgadld~~~alra~~~~~~v~~~i~~~~~e~l~~~lv~~~~~~~-~f~~~ 377 (465)
|.+|++.|.+... ++...+++.|.||+|+|+.....-.+-..-..-+.|+...+.+.-..+++...++.+ .+.+.
T Consensus 325 Re~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i~~~~i~ea~drv~~G~erks~vise~ 404 (596)
T COG0465 325 REQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKKEITMRDIEEAIDRVIAGPERKSRVISEA 404 (596)
T ss_pred HHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCeeEeccchHHHHHHHhcCcCcCCcccChh
Confidence 9999999987654 556689999999999999864211111101111233333344444444554444333 46677
Q ss_pred ccCHHHHHHHHHHHHHHhh-hhhhhhhHHHHhccccCC
Q 012383 378 RMTMEKLLEYGNMIVQEQE-NVKRVQLADKYLSEAALG 414 (465)
Q Consensus 378 ~~~~~~lle~g~~lv~eqe-~v~~~~l~~~~l~~~~l~ 414 (465)
.....++||+||.++..-- ....+..+....+|.+||
T Consensus 405 ek~~~AYhEaghalv~~~l~~~d~v~KvtIiPrG~alG 442 (596)
T COG0465 405 EKKITAYHEAGHALVGLLLPDADPVHKVTIIPRGRALG 442 (596)
T ss_pred hhcchHHHHHHHHHHHHhCCCCcccceeeeccCchhhc
Confidence 7888999999999976522 222334444455555544
No 14
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-36 Score=324.11 Aligned_cols=199 Identities=20% Similarity=0.314 Sum_probs=174.7
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEeccccc
Q 012383 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA 223 (465)
Q Consensus 144 ~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDa 223 (465)
-.++.+.|||||||||||||+||.++|..+++.||.+++++|+++|+|.++.++|++|.+| +..+||||||||+|+
T Consensus 696 ~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA----~~a~PCiLFFDEfdS 771 (952)
T KOG0735|consen 696 CPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERA----QSAKPCILFFDEFDS 771 (952)
T ss_pred CCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHh----hccCCeEEEeccccc
Confidence 3778889999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred ccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhhcCCCceEEEe--CCCHH
Q 012383 224 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 301 (465)
Q Consensus 224 i~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~--~P~~e 301 (465)
++++|+. ....|.++.++++|. +|||. +...+|.|+++|.||+.|||||+||||+|+.++ +|++.
T Consensus 772 iAPkRGh-DsTGVTDRVVNQlLT---------elDG~---Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~ 838 (952)
T KOG0735|consen 772 IAPKRGH-DSTGVTDRVVNQLLT---------ELDGA---EGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEP 838 (952)
T ss_pred cCcccCC-CCCCchHHHHHHHHH---------hhccc---cccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcH
Confidence 9999973 345677788887662 55566 778999999999999999999999999999999 99999
Q ss_pred HHHHHHHHhcc----CCCCChhHHHHHhcCCCchhhHHHHHHHhhhhHHHHHHHHHhhcCccchh
Q 012383 302 DRIGVCKGIFR----NDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGK 362 (465)
Q Consensus 302 ~R~~Il~~~l~----~~~v~~~~la~lt~gfsgadld~~~alra~~~~~~v~~~i~~~~~e~l~~ 362 (465)
+|++|++.+.. +.+++.+.++..|+||+|+||. +|.....-.++++|+++.+.+....
T Consensus 839 eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq---~ll~~A~l~avh~~l~~~~~~~~~p 900 (952)
T KOG0735|consen 839 ERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQ---SLLYNAQLAAVHEILKREDEEGVVP 900 (952)
T ss_pred HHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHH---HHHHHHHHHHHHHHHHhcCccccCC
Confidence 99999888764 4578888999999999999996 3444445567889998877555443
No 15
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.6e-36 Score=288.93 Aligned_cols=179 Identities=24% Similarity=0.339 Sum_probs=162.4
Q ss_pred hCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEeccc
Q 012383 142 SLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDL 221 (465)
Q Consensus 142 ~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEI 221 (465)
+.-|+.||+|+|||||||||||+||+++|+.....||.+.++++..+|.||..+++|++|+.| +.++|+|||||||
T Consensus 182 ~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdvfrla----kenapsiifidei 257 (408)
T KOG0727|consen 182 KQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLA----KENAPSIIFIDEI 257 (408)
T ss_pred HHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHHHHH----hccCCcEEEeehh
Confidence 345999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred ccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhhcCCCceEEEe--CCC
Q 012383 222 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 299 (465)
Q Consensus 222 Dai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~--~P~ 299 (465)
|+|+.+|-+ ..+..++.++..|+++++ ||+|+ ....+|-||++|||.+.|||||+||||+|++|+ +|+
T Consensus 258 daiatkrfd--aqtgadrevqril~elln-----qmdgf---dq~~nvkvimatnradtldpallrpgrldrkiefplpd 327 (408)
T KOG0727|consen 258 DAIATKRFD--AQTGADREVQRILIELLN-----QMDGF---DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPD 327 (408)
T ss_pred hhHhhhhcc--ccccccHHHHHHHHHHHH-----hccCc---CcccceEEEEecCcccccCHhhcCCccccccccCCCCc
Confidence 999988752 345678999999999999 89999 777899999999999999999999999999999 899
Q ss_pred HHHHHHHHHHhccCC----CCChhHHHHHhcCCCchhhH
Q 012383 300 REDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSID 334 (465)
Q Consensus 300 ~e~R~~Il~~~l~~~----~v~~~~la~lt~gfsgadld 334 (465)
+.++.-++..+..+. .++.+++...-+..||++|.
T Consensus 328 rrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~ 366 (408)
T KOG0727|consen 328 RRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADIN 366 (408)
T ss_pred hhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHH
Confidence 999888877776554 55666777788899999986
No 16
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-35 Score=285.38 Aligned_cols=178 Identities=20% Similarity=0.311 Sum_probs=165.4
Q ss_pred CCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccc
Q 012383 143 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 222 (465)
Q Consensus 143 ~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEID 222 (465)
..|+..|+|+|||||||||||+||+++|....+.|+.+++++|..+|+|+..+++|++|-.| +.++|+|||.||||
T Consensus 175 aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk~igegsrmvrelfvma----rehapsiifmdeid 250 (404)
T KOG0728|consen 175 ALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMA----REHAPSIIFMDEID 250 (404)
T ss_pred hcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHHhhhhHHHHHHHHHHH----HhcCCceEeeeccc
Confidence 46999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred cccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhhcCCCceEEEe--CCCH
Q 012383 223 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 300 (465)
Q Consensus 223 ai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~--~P~~ 300 (465)
+|...|..+ ....+..++.|.+++++ |+||+ +...++-||++|||.+-|||||+||||+|+.|+ .|+.
T Consensus 251 sigs~r~e~--~~ggdsevqrtmlelln-----qldgf---eatknikvimatnridild~allrpgridrkiefp~p~e 320 (404)
T KOG0728|consen 251 SIGSSRVES--GSGGDSEVQRTMLELLN-----QLDGF---EATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNE 320 (404)
T ss_pred ccccccccC--CCCccHHHHHHHHHHHH-----hcccc---ccccceEEEEeccccccccHhhcCCCcccccccCCCCCH
Confidence 999988633 23366788999999999 89999 888999999999999999999999999999999 8999
Q ss_pred HHHHHHHHHhccCC----CCChhHHHHHhcCCCchhhH
Q 012383 301 EDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSID 334 (465)
Q Consensus 301 e~R~~Il~~~l~~~----~v~~~~la~lt~gfsgadld 334 (465)
+.|.+|++.|.++. +++...+++...|.||+++.
T Consensus 321 ~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk 358 (404)
T KOG0728|consen 321 EARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVK 358 (404)
T ss_pred HHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhh
Confidence 99999999999875 56788999999999999886
No 17
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-35 Score=287.99 Aligned_cols=179 Identities=23% Similarity=0.341 Sum_probs=165.6
Q ss_pred hCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEeccc
Q 012383 142 SLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDL 221 (465)
Q Consensus 142 ~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEI 221 (465)
...|++||+|+|+|||||||||++|+++|.+.+..|+.+.++.|..+|+|+..+++|+.|..| +..+|+||||||+
T Consensus 198 ~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMfIGdGAkLVRDAFaLA----KEkaP~IIFIDEl 273 (424)
T KOG0652|consen 198 ENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFALA----KEKAPTIIFIDEL 273 (424)
T ss_pred HhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhhhcchHHHHHHHHHHh----hccCCeEEEEech
Confidence 356999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred ccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhhcCCCceEEEe--CCC
Q 012383 222 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 299 (465)
Q Consensus 222 Dai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~--~P~ 299 (465)
|+|..+|.++ ....++.++.++++|++ |++|+ ....+|-||++|||.+-|||||+|.||+|+.|+ .|+
T Consensus 274 DAIGtKRfDS--ek~GDREVQRTMLELLN-----QLDGF---ss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pn 343 (424)
T KOG0652|consen 274 DAIGTKRFDS--EKAGDREVQRTMLELLN-----QLDGF---SSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPN 343 (424)
T ss_pred hhhccccccc--cccccHHHHHHHHHHHH-----hhcCC---CCccceEEEeecccccccCHHHhhcccccccccCCCCC
Confidence 9999888633 34567899999999999 99999 788999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHhccCC----CCChhHHHHHhcCCCchhhH
Q 012383 300 REDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSID 334 (465)
Q Consensus 300 ~e~R~~Il~~~l~~~----~v~~~~la~lt~gfsgadld 334 (465)
.+.|..|++.|.++. +++++++++-|++|.|+...
T Consensus 344 e~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcK 382 (424)
T KOG0652|consen 344 EEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCK 382 (424)
T ss_pred hHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhhe
Confidence 999999999998865 56678999999999997754
No 18
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-35 Score=287.39 Aligned_cols=178 Identities=22% Similarity=0.324 Sum_probs=162.2
Q ss_pred CCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccc
Q 012383 143 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 222 (465)
Q Consensus 143 ~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEID 222 (465)
..|+.||+|||||||||||||++|+|+|+..+..||.+-+|+|..+|+||..+++|++|+.| +..+-|||||||||
T Consensus 205 ~lgidppkgvllygppgtgktl~aravanrtdacfirvigselvqkyvgegarmvrelf~ma----rtkkaciiffdeid 280 (435)
T KOG0729|consen 205 NLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMA----RTKKACIIFFDEID 280 (435)
T ss_pred hcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhhHHHHHHHHHHh----cccceEEEEeeccc
Confidence 35999999999999999999999999999999999999999999999999999999999999 98899999999999
Q ss_pred cccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhhcCCCceEEEe--CCCH
Q 012383 223 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 300 (465)
Q Consensus 223 ai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~--~P~~ 300 (465)
++.+.|-+. ....+..++.++++|++ |++|+ ..+.++-|+++||||+.|||||+||||+|+.++ +|+.
T Consensus 281 aiggarfdd--g~ggdnevqrtmleli~-----qldgf---dprgnikvlmatnrpdtldpallrpgrldrkvef~lpdl 350 (435)
T KOG0729|consen 281 AIGGARFDD--GAGGDNEVQRTMLELIN-----QLDGF---DPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDL 350 (435)
T ss_pred cccCccccC--CCCCcHHHHHHHHHHHH-----hccCC---CCCCCeEEEeecCCCCCcCHhhcCCcccccceeccCCcc
Confidence 999887522 12234678888999998 89999 888999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHhccCCCC----ChhHHHHHhcCCCchhhH
Q 012383 301 EDRIGVCKGIFRNDNV----ADDDIVKLVDTFPGQSID 334 (465)
Q Consensus 301 e~R~~Il~~~l~~~~v----~~~~la~lt~gfsgadld 334 (465)
+.|..|++.|.+...+ ..+-+++++..-+|++|.
T Consensus 351 egrt~i~kihaksmsverdir~ellarlcpnstgaeir 388 (435)
T KOG0729|consen 351 EGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIR 388 (435)
T ss_pred cccceeEEEeccccccccchhHHHHHhhCCCCcchHHH
Confidence 9999999999887544 466899999999999885
No 19
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.8e-35 Score=286.65 Aligned_cols=204 Identities=19% Similarity=0.246 Sum_probs=176.8
Q ss_pred cccccCCCCCchhHHHHHHHHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCChH
Q 012383 115 LDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPA 194 (465)
Q Consensus 115 ~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge~~ 194 (465)
|+.+.|-..-.+++.+.+++.|.-..++..+-+|=+|+|||||||||||+||+|||.+.+..|+.++.++|.++|.||++
T Consensus 132 WsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGESE 211 (439)
T KOG0739|consen 132 WSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESE 211 (439)
T ss_pred hhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccHH
Confidence 36677766667777878888887777777777777999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEE
Q 012383 195 KLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVT 274 (465)
Q Consensus 195 k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~T 274 (465)
++++.+|+.| +.++|+||||||||++|++|+++ ......++-..+| |||.|. .....+|+|+++
T Consensus 212 kLVknLFemA----Re~kPSIIFiDEiDslcg~r~en-EseasRRIKTEfL---------VQMqGV--G~d~~gvLVLgA 275 (439)
T KOG0739|consen 212 KLVKNLFEMA----RENKPSIIFIDEIDSLCGSRSEN-ESEASRRIKTEFL---------VQMQGV--GNDNDGVLVLGA 275 (439)
T ss_pred HHHHHHHHHH----HhcCCcEEEeehhhhhccCCCCC-chHHHHHHHHHHH---------Hhhhcc--ccCCCceEEEec
Confidence 9999999999 99999999999999999999744 3445566667666 577776 234678999999
Q ss_pred eCCCCCCChhhhcCCCceEEEe--CCCHHHHHHHHHHhccCCC--C---ChhHHHHHhcCCCchhhHHH
Q 012383 275 GNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDN--V---ADDDIVKLVDTFPGQSIDFF 336 (465)
Q Consensus 275 TN~~~~LD~ALlR~GRfd~~i~--~P~~e~R~~Il~~~l~~~~--v---~~~~la~lt~gfsgadld~~ 336 (465)
||-|+.||.|++| ||++.|| +|....|..+++.|+.+.+ + +..++++.|+||||+||..+
T Consensus 276 TNiPw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisiv 342 (439)
T KOG0739|consen 276 TNIPWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIV 342 (439)
T ss_pred CCCchhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEE
Confidence 9999999999999 9999999 9999999999999998753 2 34589999999999999753
No 20
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-33 Score=302.24 Aligned_cols=176 Identities=24% Similarity=0.392 Sum_probs=154.2
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEeccccc
Q 012383 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA 223 (465)
Q Consensus 144 ~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDa 223 (465)
.++++|+|+|||||||||||++|+++|++++.+|+.+.++++.++|+|+++++|+.+|..| +..+||||||||||+
T Consensus 271 ~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A----~~~~p~iiFiDEiDs 346 (494)
T COG0464 271 LGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKNIRELFEKA----RKLAPSIIFIDEIDS 346 (494)
T ss_pred cCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHHHHHHHHHHHH----HcCCCcEEEEEchhh
Confidence 3789999999999999999999999999999999999999999999999999999999999 899999999999999
Q ss_pred ccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhhcCCCceEEEe--CCCHH
Q 012383 224 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 301 (465)
Q Consensus 224 i~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~--~P~~e 301 (465)
++..|+.+.. ....+.++++| ..+| +. +...+|+||+|||+++.||+|++||||||+.++ +|+.+
T Consensus 347 ~~~~r~~~~~-~~~~r~~~~lL-~~~d--------~~---e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~ 413 (494)
T COG0464 347 LASGRGPSED-GSGRRVVGQLL-TELD--------GI---EKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLE 413 (494)
T ss_pred hhccCCCCCc-hHHHHHHHHHH-HHhc--------CC---CccCceEEEecCCCccccCHhhcccCccceEeecCCCCHH
Confidence 9999873322 22234555444 3333 55 677889999999999999999999999999999 99999
Q ss_pred HHHHHHHHhccC------CCCChhHHHHHhcCCCchhhHHH
Q 012383 302 DRIGVCKGIFRN------DNVADDDIVKLVDTFPGQSIDFF 336 (465)
Q Consensus 302 ~R~~Il~~~l~~------~~v~~~~la~lt~gfsgadld~~ 336 (465)
+|.+|++.++.. .+++.+.+++++++|+|+||..+
T Consensus 414 ~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i 454 (494)
T COG0464 414 ERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAAL 454 (494)
T ss_pred HHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHH
Confidence 999999999983 24667799999999999999754
No 21
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=5.7e-33 Score=295.96 Aligned_cols=174 Identities=22% Similarity=0.353 Sum_probs=150.8
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEeccccc
Q 012383 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA 223 (465)
Q Consensus 144 ~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDa 223 (465)
.|+++|+|||||||||||||++|++||++++.+++.++.+.+.++|+|+++++++++|..| +..+||||||||||+
T Consensus 254 ~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGese~~l~~~f~~A----~~~~P~IL~IDEID~ 329 (489)
T CHL00195 254 YGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESESRMRQMIRIA----EALSPCILWIDEIDK 329 (489)
T ss_pred cCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChHHHHHHHHHHHH----HhcCCcEEEehhhhh
Confidence 4889999999999999999999999999999999999999999999999999999999998 888999999999999
Q ss_pred ccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhhcCCCceEEEe--CCCHH
Q 012383 224 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 301 (465)
Q Consensus 224 i~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~--~P~~e 301 (465)
++..+.........++++.. ++..++ ....+|+||+|||+++.||++++|+||||+.++ +|+.+
T Consensus 330 ~~~~~~~~~d~~~~~rvl~~-lL~~l~-------------~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~ 395 (489)
T CHL00195 330 AFSNSESKGDSGTTNRVLAT-FITWLS-------------EKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLE 395 (489)
T ss_pred hhccccCCCCchHHHHHHHH-HHHHHh-------------cCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHH
Confidence 98765433333344555554 434444 234679999999999999999999999999999 99999
Q ss_pred HHHHHHHHhccCC------CCChhHHHHHhcCCCchhhHH
Q 012383 302 DRIGVCKGIFRND------NVADDDIVKLVDTFPGQSIDF 335 (465)
Q Consensus 302 ~R~~Il~~~l~~~------~v~~~~la~lt~gfsgadld~ 335 (465)
+|.+|++.|+.+. +.+.+.+++.|+||+|+||+.
T Consensus 396 eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~ 435 (489)
T CHL00195 396 EREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQ 435 (489)
T ss_pred HHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHH
Confidence 9999999998763 455679999999999999973
No 22
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=7.4e-33 Score=295.45 Aligned_cols=281 Identities=17% Similarity=0.205 Sum_probs=201.4
Q ss_pred ccccccCCCCCchhHHHHHHHHHHH-hhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCc----------eEEecc
Q 012383 114 NLDNTIDGLYIAPAFMDKLVVHITK-NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN----------PIMMSA 182 (465)
Q Consensus 114 ~~~~~~~~~~i~~~~~d~~~~~i~k-~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~----------~i~vs~ 182 (465)
+|+++.|-......+.+.+...... ..+...|+++|+|+|||||||||||++|+++|++++.+ |+.+++
T Consensus 180 ~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~ 259 (512)
T TIGR03689 180 TYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKG 259 (512)
T ss_pred CHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccc
Confidence 4455554433333333333332222 22335689999999999999999999999999998654 667888
Q ss_pred cccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccc
Q 012383 183 GELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYN 262 (465)
Q Consensus 183 s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~ 262 (465)
+++.++|+|++++.++.+|..|.+....+.||||||||+|+++.+|+.+......++++++ |++.+| +.
T Consensus 260 ~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~-LL~~LD--------gl-- 328 (512)
T TIGR03689 260 PELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQ-LLSELD--------GV-- 328 (512)
T ss_pred hhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHH-HHHHhc--------cc--
Confidence 9999999999999999999999666666789999999999999888633333333444443 334444 55
Q ss_pred cCCCCCceEEEEeCCCCCCChhhhcCCCceEEEe--CCCHHHHHHHHHHhccCC-CCChhHHHHHhcCCCchhhHHHHHH
Q 012383 263 KEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRND-NVADDDIVKLVDTFPGQSIDFFGAL 339 (465)
Q Consensus 263 ~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~--~P~~e~R~~Il~~~l~~~-~v~~~~la~lt~gfsgadld~~~al 339 (465)
....+|+||+|||+++.|||||+||||||+.|+ .|+.++|.+|++.++... .+ .+++ ..+.|+++++++.+
T Consensus 329 -~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l-~~~l-~~~~g~~~a~~~al--- 402 (512)
T TIGR03689 329 -ESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPL-DADL-AEFDGDREATAAAL--- 402 (512)
T ss_pred -ccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCc-hHHH-HHhcCCCHHHHHHH---
Confidence 455789999999999999999999999999988 999999999999998753 34 3344 44689999888632
Q ss_pred HhhhhHHHH-----HHHH--------------HhhcCccchhhhhcCcCC--C---CCCCCCccCHHHHHHHHHHHHHHh
Q 012383 340 RARVYDDEV-----RKWI--------------SGVGVGSIGKSLVNSKEA--A---PTFEQPRMTMEKLLEYGNMIVQEQ 395 (465)
Q Consensus 340 ra~~~~~~v-----~~~i--------------~~~~~e~l~~~lv~~~~~--~---~~f~~~~~~~~~lle~g~~lv~eq 395 (465)
..++++... +.|+ +..-++++.+.++.+.+. . -.-....+++++|+.+......|+
T Consensus 403 ~~~av~~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~~~~~~~~~l~~a~~~e~~~~ 482 (512)
T TIGR03689 403 IQRAVDHLYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGGQVGLRIEHLLAAVLDEFRES 482 (512)
T ss_pred HHHHHHHHhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcCCcCcCHHHHHHHHHHhhccc
Confidence 222222221 1222 111234444445544221 0 011336889999999999999999
Q ss_pred hhhhhhhhHHHHhccc
Q 012383 396 ENVKRVQLADKYLSEA 411 (465)
Q Consensus 396 e~v~~~~l~~~~l~~~ 411 (465)
+..+.+..+++|.+.+
T Consensus 483 ~~~~~~~~~~~w~~~~ 498 (512)
T TIGR03689 483 EDLPNTTNPDDWARIS 498 (512)
T ss_pred ccCCCCCCHHHHhhhh
Confidence 9999999999999884
No 23
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=9.2e-33 Score=308.25 Aligned_cols=222 Identities=23% Similarity=0.349 Sum_probs=173.6
Q ss_pred CCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccc
Q 012383 143 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 222 (465)
Q Consensus 143 ~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEID 222 (465)
..++++|+|+|||||||||||++|+++|++++.+|+.++++++.++|+|++++.++.+|..| +...||||||||||
T Consensus 481 ~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A----~~~~p~iifiDEid 556 (733)
T TIGR01243 481 KMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKA----RQAAPAIIFFDEID 556 (733)
T ss_pred hcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHH----HhcCCEEEEEEChh
Confidence 45889999999999999999999999999999999999999999999999999999999999 89999999999999
Q ss_pred cccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhhcCCCceEEEe--CCCH
Q 012383 223 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 300 (465)
Q Consensus 223 ai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~--~P~~ 300 (465)
++++.|+......+..+.++++| ..+| |. ....+|+||+|||+++.||+|++||||||+.++ +|+.
T Consensus 557 ~l~~~r~~~~~~~~~~~~~~~lL-~~ld--------g~---~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~ 624 (733)
T TIGR01243 557 AIAPARGARFDTSVTDRIVNQLL-TEMD--------GI---QELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDE 624 (733)
T ss_pred hhhccCCCCCCccHHHHHHHHHH-HHhh--------cc---cCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCH
Confidence 99998864433344455555444 3333 55 556789999999999999999999999999999 9999
Q ss_pred HHHHHHHHHhccCC----CCChhHHHHHhcCCCchhhHHHHHHHhhhhHHHHHHHHHhhcCccchhhhhcCcCCCCCC-C
Q 012383 301 EDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTF-E 375 (465)
Q Consensus 301 e~R~~Il~~~l~~~----~v~~~~la~lt~gfsgadld~~~alra~~~~~~v~~~i~~~~~e~l~~~lv~~~~~~~~f-~ 375 (465)
++|.+|++.+++.. +++.+.+++.++||+|+||.. ++......++++.+.....+.+.. ..+.+ .
T Consensus 625 ~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~---~~~~A~~~a~~~~~~~~~~~~~~~-------~~~~~~~ 694 (733)
T TIGR01243 625 EARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEA---VCREAAMAALRESIGSPAKEKLEV-------GEEEFLK 694 (733)
T ss_pred HHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHH---HHHHHHHHHHHHHhhhccchhhhc-------ccccccc
Confidence 99999999988765 455679999999999999974 233333344455444322121211 00011 2
Q ss_pred CCccCHHHHHHHHHH
Q 012383 376 QPRMTMEKLLEYGNM 390 (465)
Q Consensus 376 ~~~~~~~~lle~g~~ 390 (465)
...++.+++.++-..
T Consensus 695 ~~~i~~~~f~~al~~ 709 (733)
T TIGR01243 695 DLKVEMRHFLEALKK 709 (733)
T ss_pred cCcccHHHHHHHHHH
Confidence 245777887776653
No 24
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-32 Score=278.11 Aligned_cols=261 Identities=19% Similarity=0.284 Sum_probs=193.4
Q ss_pred cccccccccCCCCCchhHHHHHHHHHHHhhhh--CCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccC
Q 012383 111 RTYNLDNTIDGLYIAPAFMDKLVVHITKNFMS--LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 188 (465)
Q Consensus 111 r~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~--~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~ 188 (465)
-.-+|+.+.+-..+...+.+.+++..-+.-+. -.-.++|+|||||||||||||++|+++|++.|.+|+.++.+.+.++
T Consensus 87 I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~K 166 (386)
T KOG0737|consen 87 IGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSK 166 (386)
T ss_pred ceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchh
Confidence 33456777777677777777777665544333 3456799999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCC
Q 012383 189 NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPR 268 (465)
Q Consensus 189 ~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~ 268 (465)
|.||.+++++.+|..| .+-+||||||||+|++.+.|. .++.... ++...-+|-+.| |.. .....+
T Consensus 167 WfgE~eKlv~AvFslA----sKl~P~iIFIDEvds~L~~R~-s~dHEa~-a~mK~eFM~~WD--------Gl~-s~~~~r 231 (386)
T KOG0737|consen 167 WFGEAQKLVKAVFSLA----SKLQPSIIFIDEVDSFLGQRR-STDHEAT-AMMKNEFMALWD--------GLS-SKDSER 231 (386)
T ss_pred hHHHHHHHHHHHHhhh----hhcCcceeehhhHHHHHhhcc-cchHHHH-HHHHHHHHHHhc--------ccc-CCCCce
Confidence 9999999999999999 899999999999999999983 4444444 444444555555 552 223456
Q ss_pred ceEEEEeCCCCCCChhhhcCCCceEEEe--CCCHHHHHHHHHHhccCCC----CChhHHHHHhcCCCchhhHHHHHHHhh
Q 012383 269 VPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDN----VADDDIVKLVDTFPGQSIDFFGALRAR 342 (465)
Q Consensus 269 V~VI~TTN~~~~LD~ALlR~GRfd~~i~--~P~~e~R~~Il~~~l~~~~----v~~~~la~lt~gfsgadld~~~alra~ 342 (465)
|+|+++||||.+||.|++| ||-+.++ +|+.++|.+|++.+++..+ ++...++++|+||||.||.... |.+
T Consensus 232 VlVlgATNRP~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC--~~A 307 (386)
T KOG0737|consen 232 VLVLGATNRPFDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELC--RLA 307 (386)
T ss_pred EEEEeCCCCCccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHH--HHH
Confidence 9999999999999999999 9999888 9999999999999998764 5567999999999999997432 222
Q ss_pred hhHHHHHHHHHhh-cCccchhhhhcCcCCCC---CCCCCccCHHHHHHHHHHH
Q 012383 343 VYDDEVRKWISGV-GVGSIGKSLVNSKEAAP---TFEQPRMTMEKLLEYGNMI 391 (465)
Q Consensus 343 ~~~~~v~~~i~~~-~~e~l~~~lv~~~~~~~---~f~~~~~~~~~lle~g~~l 391 (465)
. -.-++.++..- +...+.+.+...+...+ ...-..+..+++..+.+.+
T Consensus 308 a-~~~ire~~~~~~~~~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v 359 (386)
T KOG0737|consen 308 A-LRPIRELLVSETGLLDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRV 359 (386)
T ss_pred h-HhHHHHHHHhcccchhhhhhhhhccCCcccccccccCcccHHHHHHHHHhh
Confidence 2 23456666552 21111111111111111 1123456788888887744
No 25
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.98 E-value=4.5e-32 Score=282.97 Aligned_cols=208 Identities=19% Similarity=0.262 Sum_probs=165.0
Q ss_pred ccccccCCCCCchhHHHHHHHHHHH-hhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCC
Q 012383 114 NLDNTIDGLYIAPAFMDKLVVHITK-NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGE 192 (465)
Q Consensus 114 ~~~~~~~~~~i~~~~~d~~~~~i~k-~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge 192 (465)
+|+++.|-.....++.+.+...+.. +.....|+.+|+|+|||||||||||++|+++|++++.+|+.+.++++.++|+|+
T Consensus 143 ~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~ge 222 (398)
T PTZ00454 143 TYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLGE 222 (398)
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhcch
Confidence 3455544433333443333333332 233456899999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEE
Q 012383 193 PAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 272 (465)
Q Consensus 193 ~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI 272 (465)
+++.++.+|..| +..+||||||||||+++.+|.+.. ...+..++..+++++. +++++ ....++.||
T Consensus 223 ~~~~lr~lf~~A----~~~~P~ILfIDEID~i~~~r~~~~--~~~d~~~~r~l~~LL~-----~ld~~---~~~~~v~VI 288 (398)
T PTZ00454 223 GPRMVRDVFRLA----RENAPSIIFIDEVDSIATKRFDAQ--TGADREVQRILLELLN-----QMDGF---DQTTNVKVI 288 (398)
T ss_pred hHHHHHHHHHHH----HhcCCeEEEEECHhhhcccccccc--CCccHHHHHHHHHHHH-----Hhhcc---CCCCCEEEE
Confidence 999999999998 889999999999999998774221 1122344455555555 44455 445689999
Q ss_pred EEeCCCCCCChhhhcCCCceEEEe--CCCHHHHHHHHHHhccCC----CCChhHHHHHhcCCCchhhHH
Q 012383 273 VTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF 335 (465)
Q Consensus 273 ~TTN~~~~LD~ALlR~GRfd~~i~--~P~~e~R~~Il~~~l~~~----~v~~~~la~lt~gfsgadld~ 335 (465)
+|||+++.||||++|+||||+.|+ +|+.++|.+|++.++... +++.+.+++.++||+|+||..
T Consensus 289 ~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~ 357 (398)
T PTZ00454 289 MATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAA 357 (398)
T ss_pred EecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHH
Confidence 999999999999999999999999 999999999999998764 455679999999999999863
No 26
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.98 E-value=2.2e-32 Score=315.97 Aligned_cols=173 Identities=9% Similarity=0.053 Sum_probs=139.4
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCC----------CC----------------------
Q 012383 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN----------AG---------------------- 191 (465)
Q Consensus 144 ~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~----------~G---------------------- 191 (465)
.|+++|+||||+||||||||+||+|||.+++++|+.++++++.+++ +|
T Consensus 1625 LGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~ 1704 (2281)
T CHL00206 1625 LALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTM 1704 (2281)
T ss_pred cCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhh
Confidence 4889999999999999999999999999999999999999998765 22
Q ss_pred ---------ChHH--HHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCc
Q 012383 192 ---------EPAK--LIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGM 260 (465)
Q Consensus 192 ---------e~~k--~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~ 260 (465)
+.++ .|+.+|+.| ++.+||||||||||+++.+.. +......|++.+| |.
T Consensus 1705 ~n~~~~~m~~~e~~~rIr~lFelA----Rk~SPCIIFIDEIDaL~~~ds--------~~ltL~qLLneLD--------g~ 1764 (2281)
T CHL00206 1705 MNALTMDMMPKIDRFYITLQFELA----KAMSPCIIWIPNIHDLNVNES--------NYLSLGLLVNSLS--------RD 1764 (2281)
T ss_pred cchhhhhhhhhhhHHHHHHHHHHH----HHCCCeEEEEEchhhcCCCcc--------ceehHHHHHHHhc--------cc
Confidence 2223 388899999 999999999999999987632 1111223444444 54
Q ss_pred cccCCCCCceEEEEeCCCCCCChhhhcCCCceEEEe--CCCHHHHHHHHHHhc-------cCCCCChhHHHHHhcCCCch
Q 012383 261 YNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIF-------RNDNVADDDIVKLVDTFPGQ 331 (465)
Q Consensus 261 ~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~--~P~~e~R~~Il~~~l-------~~~~v~~~~la~lt~gfsga 331 (465)
.......+|+||||||+|+.|||||+||||||+.|+ .|+..+|.+|+..++ ....++.+.+++.|.||+||
T Consensus 1765 ~~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGA 1844 (2281)
T CHL00206 1765 CERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNAR 1844 (2281)
T ss_pred cccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHH
Confidence 322345789999999999999999999999999999 899999999876532 22345678999999999999
Q ss_pred hhHHH
Q 012383 332 SIDFF 336 (465)
Q Consensus 332 dld~~ 336 (465)
||...
T Consensus 1845 DLanL 1849 (2281)
T CHL00206 1845 DLVAL 1849 (2281)
T ss_pred HHHHH
Confidence 99743
No 27
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.97 E-value=5.9e-32 Score=262.41 Aligned_cols=200 Identities=22% Similarity=0.284 Sum_probs=163.5
Q ss_pred cccccccccCCCCCchhHHHHHHHHHHHhhhhCC---CCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEeccccccc
Q 012383 111 RTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLP---NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES 187 (465)
Q Consensus 111 r~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~---~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s 187 (465)
+..+|+.++|. + ..+..+.+.-.||..| |-=.|+.||+|||||||||++|+++|++..++++.+++.+|+.
T Consensus 116 ~~it~ddViGq-----E-eAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liG 189 (368)
T COG1223 116 SDITLDDVIGQ-----E-EAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIG 189 (368)
T ss_pred ccccHhhhhch-----H-HHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHH
Confidence 34455666654 1 1244556666777644 6667999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCC
Q 012383 188 GNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP 267 (465)
Q Consensus 188 ~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~ 267 (465)
+++|+..+.|+++|.+| ++.+|||+||||+|+|+-+|.-.+-..-.+..++++| . +|||. .++.
T Consensus 190 ehVGdgar~Ihely~rA----~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALL----T-----elDgi---~ene 253 (368)
T COG1223 190 EHVGDGARRIHELYERA----RKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALL----T-----ELDGI---KENE 253 (368)
T ss_pred HHhhhHHHHHHHHHHHH----HhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHH----H-----hccCc---ccCC
Confidence 99999999999999999 9999999999999999876641222222334555444 2 44466 7889
Q ss_pred CceEEEEeCCCCCCChhhhcCCCceEEEe--CCCHHHHHHHHHHhccCCCCC----hhHHHHHhcCCCchhhH
Q 012383 268 RVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNVA----DDDIVKLVDTFPGQSID 334 (465)
Q Consensus 268 ~V~VI~TTN~~~~LD~ALlR~GRfd~~i~--~P~~e~R~~Il~~~l~~~~v~----~~~la~lt~gfsgadld 334 (465)
+|..|++||+|+.||+|++. ||+..|+ +|+.++|.+|++.+.++.++. .+.+++.+.||||.||.
T Consensus 254 GVvtIaaTN~p~~LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdik 324 (368)
T COG1223 254 GVVTIAATNRPELLDPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIK 324 (368)
T ss_pred ceEEEeecCChhhcCHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHH
Confidence 99999999999999999976 9999998 999999999999999876543 56999999999999985
No 28
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.97 E-value=4.4e-32 Score=290.43 Aligned_cols=207 Identities=21% Similarity=0.286 Sum_probs=163.3
Q ss_pred ccccccccCCCCCchhHHHHHHHHHHHh--hhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCC
Q 012383 112 TYNLDNTIDGLYIAPAFMDKLVVHITKN--FMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN 189 (465)
Q Consensus 112 ~~~~~~~~~~~~i~~~~~d~~~~~i~k~--~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~ 189 (465)
..+|+++.+...+..++.+ .+.. .++ .+...|.++|+|+|||||||||||++|+++|++++++++.++++++.+.+
T Consensus 51 ~~~~~di~g~~~~k~~l~~-~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~ 128 (495)
T TIGR01241 51 KVTFKDVAGIDEAKEELME-IVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMF 128 (495)
T ss_pred CCCHHHhCCHHHHHHHHHH-HHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHH
Confidence 4456777666555554432 2222 222 12345789999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcc--cchhhHHHHHHHHHhhcCCccccCCCccccCCCC
Q 012383 190 AGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQ--YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP 267 (465)
Q Consensus 190 ~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~--~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~ 267 (465)
.|++++.++.+|..| +..+||||||||||+++.++..... .....+.++++| . +++++ ....
T Consensus 129 ~g~~~~~l~~~f~~a----~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL----~-----~~d~~---~~~~ 192 (495)
T TIGR01241 129 VGVGASRVRDLFEQA----KKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLL----V-----EMDGF---GTNT 192 (495)
T ss_pred hcccHHHHHHHHHHH----HhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHH----h-----hhccc---cCCC
Confidence 999999999999999 8889999999999999988753211 112223334333 2 33355 4557
Q ss_pred CceEEEEeCCCCCCChhhhcCCCceEEEe--CCCHHHHHHHHHHhccCCC----CChhHHHHHhcCCCchhhHHH
Q 012383 268 RVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDN----VADDDIVKLVDTFPGQSIDFF 336 (465)
Q Consensus 268 ~V~VI~TTN~~~~LD~ALlR~GRfd~~i~--~P~~e~R~~Il~~~l~~~~----v~~~~la~lt~gfsgadld~~ 336 (465)
+|+||+|||+++.||++|+||||||+.++ +|+.++|.+|++.++.... ++.+.+++.+.||+|+||..+
T Consensus 193 ~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l 267 (495)
T TIGR01241 193 GVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANL 267 (495)
T ss_pred CeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHH
Confidence 79999999999999999999999999999 9999999999999987653 456699999999999999743
No 29
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.97 E-value=2.2e-31 Score=277.40 Aligned_cols=180 Identities=23% Similarity=0.358 Sum_probs=155.5
Q ss_pred hCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEeccc
Q 012383 142 SLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDL 221 (465)
Q Consensus 142 ~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEI 221 (465)
...|+.+|+|||||||||||||++|+++|++++.+|+.++++++.++|.|++++.++.+|..| +...|||||||||
T Consensus 158 ~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a----~~~~p~IlfiDEi 233 (389)
T PRK03992 158 EEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIGEGARLVRELFELA----REKAPSIIFIDEI 233 (389)
T ss_pred HhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhccchHHHHHHHHHHH----HhcCCeEEEEech
Confidence 356899999999999999999999999999999999999999999999999999999999999 8889999999999
Q ss_pred ccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhhcCCCceEEEe--CCC
Q 012383 222 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 299 (465)
Q Consensus 222 Dai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~--~P~ 299 (465)
|++++.+.+.. ......++.++++++. ++++. ....++.||+|||+++.||+|++||||||+.++ +|+
T Consensus 234 D~l~~~r~~~~--~~~~~~~~~~l~~lL~-----~ld~~---~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~ 303 (389)
T PRK03992 234 DAIAAKRTDSG--TSGDREVQRTLMQLLA-----EMDGF---DPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPD 303 (389)
T ss_pred hhhhcccccCC--CCccHHHHHHHHHHHH-----hcccc---CCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCC
Confidence 99998875322 1123344556666665 44454 455689999999999999999999999999999 999
Q ss_pred HHHHHHHHHHhccCC----CCChhHHHHHhcCCCchhhHH
Q 012383 300 REDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF 335 (465)
Q Consensus 300 ~e~R~~Il~~~l~~~----~v~~~~la~lt~gfsgadld~ 335 (465)
.++|.+|++.+++.. +++.+.++..++||+|+||..
T Consensus 304 ~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~ 343 (389)
T PRK03992 304 EEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKA 343 (389)
T ss_pred HHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHH
Confidence 999999999998754 456779999999999999974
No 30
>CHL00176 ftsH cell division protein; Validated
Probab=99.97 E-value=1.4e-31 Score=293.06 Aligned_cols=180 Identities=23% Similarity=0.344 Sum_probs=151.5
Q ss_pred CCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccc
Q 012383 143 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 222 (465)
Q Consensus 143 ~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEID 222 (465)
..+.++|+|+|||||||||||++|+++|++++++++.++++++.+.+.|...+.++.+|..| +...||||||||||
T Consensus 210 ~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~~~~vr~lF~~A----~~~~P~ILfIDEID 285 (638)
T CHL00176 210 AVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAARVRDLFKKA----KENSPCIVFIDEID 285 (638)
T ss_pred hccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhhHHHHHHHHHHH----hcCCCcEEEEecch
Confidence 34788999999999999999999999999999999999999999999999989999999999 88999999999999
Q ss_pred cccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhhcCCCceEEEe--CCCH
Q 012383 223 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 300 (465)
Q Consensus 223 ai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~--~P~~ 300 (465)
+++..|+.... ..+....++|..++. +++++ ....+|.||+|||+++.||+||+||||||+.+. +|+.
T Consensus 286 ~l~~~r~~~~~--~~~~e~~~~L~~LL~-----~~dg~---~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~ 355 (638)
T CHL00176 286 AVGRQRGAGIG--GGNDEREQTLNQLLT-----EMDGF---KGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDR 355 (638)
T ss_pred hhhhcccCCCC--CCcHHHHHHHHHHHh-----hhccc---cCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCH
Confidence 99887752211 112233344545544 44455 456789999999999999999999999999999 9999
Q ss_pred HHHHHHHHHhccCCCC----ChhHHHHHhcCCCchhhHHH
Q 012383 301 EDRIGVCKGIFRNDNV----ADDDIVKLVDTFPGQSIDFF 336 (465)
Q Consensus 301 e~R~~Il~~~l~~~~v----~~~~la~lt~gfsgadld~~ 336 (465)
++|.+|++.+++...+ +...+++.+.||+|+||...
T Consensus 356 ~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~l 395 (638)
T CHL00176 356 EGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANL 395 (638)
T ss_pred HHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHH
Confidence 9999999999976543 34588999999999999743
No 31
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.5e-30 Score=274.07 Aligned_cols=275 Identities=20% Similarity=0.277 Sum_probs=203.6
Q ss_pred CCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCChHHHHHHHHHHHHHHHHhCC-ceEEEeccc
Q 012383 143 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGK-MCCLMINDL 221 (465)
Q Consensus 143 ~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~-p~ILfIDEI 221 (465)
..|+++|+|+|+|||||||||+++++||++.++.++.++++++++++.||+++++|..|++| .+.+ |+|||||||
T Consensus 212 s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~gEte~~LR~~f~~a----~k~~~psii~IdEl 287 (693)
T KOG0730|consen 212 SIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFPGETESNLRKAFAEA----LKFQVPSIIFIDEL 287 (693)
T ss_pred hcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhcccchHHHHHHHHHHH----hccCCCeeEeHHhH
Confidence 45999999999999999999999999999999999999999999999999999999999999 8888 999999999
Q ss_pred ccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhhcCCCceEEEe--CCC
Q 012383 222 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 299 (465)
Q Consensus 222 Dai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~--~P~ 299 (465)
|+++++|... .. ..+.+...|+.|+| ++ ....+++||++||+|+.||++++| ||||+.+. .|+
T Consensus 288 d~l~p~r~~~-~~--~e~Rv~sqlltL~d--------g~---~~~~~vivl~atnrp~sld~alRR-gRfd~ev~IgiP~ 352 (693)
T KOG0730|consen 288 DALCPKREGA-DD--VESRVVSQLLTLLD--------GL---KPDAKVIVLAATNRPDSLDPALRR-GRFDREVEIGIPG 352 (693)
T ss_pred hhhCCccccc-ch--HHHHHHHHHHHHHh--------hC---cCcCcEEEEEecCCccccChhhhc-CCCcceeeecCCC
Confidence 9999998632 22 34555556778888 66 466899999999999999999999 99999999 999
Q ss_pred HHHHHHHHHHhccCCCCC----hhHHHHHhcCCCchhhHHHHHHHhhhhHHHHHHHHHhhcCccchhhhhcCc---CCCC
Q 012383 300 REDRIGVCKGIFRNDNVA----DDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSK---EAAP 372 (465)
Q Consensus 300 ~e~R~~Il~~~l~~~~v~----~~~la~lt~gfsgadld~~~alra~~~~~~v~~~i~~~~~e~l~~~lv~~~---~~~~ 372 (465)
..+|.+|++.+++..+.. ..+++..++||.|+||. +++......++++-.. .+-..+.+.. -..+
T Consensus 353 ~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~---~l~~ea~~~~~r~~~~-----~~~~A~~~i~psa~Re~ 424 (693)
T KOG0730|consen 353 SDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLA---ALCREASLQATRRTLE-----IFQEALMGIRPSALREI 424 (693)
T ss_pred chhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHH---HHHHHHHHHHhhhhHH-----HHHHHHhcCCchhhhhe
Confidence 999999999999876544 55899999999999996 3333333334444111 1111111110 0122
Q ss_pred CCCCCccCHHHHHHHHHHHHHH-hhhh-hhhhhHHHHhcccc--------CCCchhhhhhhcc--hhhhhhhhCCCCCCC
Q 012383 373 TFEQPRMTMEKLLEYGNMIVQE-QENV-KRVQLADKYLSEAA--------LGEANEDAIQSGN--FYGKAAQQMNVPVPE 440 (465)
Q Consensus 373 ~f~~~~~~~~~lle~g~~lv~e-qe~v-~~~~l~~~~l~~~~--------l~~~~~~~~~~g~--~~~~~~~~~~~~~~~ 440 (465)
..+.+.++|+++--. +.+..| |+.| ...+.+++|.+..- -|.++ -|| .+-.+|.++..+|..
T Consensus 425 ~ve~p~v~W~dIGGl-E~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPG-----C~KT~lAkalAne~~~nFls 498 (693)
T KOG0730|consen 425 LVEMPNVSWDDIGGL-EELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPG-----CGKTLLAKALANEAGMNFLS 498 (693)
T ss_pred eccCCCCChhhccCH-HHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCC-----cchHHHHHHHhhhhcCCeee
Confidence 346678888876321 122333 3333 45678888887520 12222 232 444588899988888
Q ss_pred CCCCcccccC
Q 012383 441 GCTDPTAENF 450 (465)
Q Consensus 441 ~~~~~~~~~~ 450 (465)
+=.|+-++.|
T Consensus 499 vkgpEL~sk~ 508 (693)
T KOG0730|consen 499 VKGPELFSKY 508 (693)
T ss_pred ccCHHHHHHh
Confidence 7666665554
No 32
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.97 E-value=1.9e-30 Score=273.16 Aligned_cols=179 Identities=21% Similarity=0.325 Sum_probs=153.0
Q ss_pred CCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccc
Q 012383 143 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 222 (465)
Q Consensus 143 ~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEID 222 (465)
..|+.+|+|+|||||||||||++|++||++++.+|+.+.++++.++|.|+.++.++.+|..| +...||||||||||
T Consensus 211 ~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~~Ge~~~~vr~lF~~A----~~~~P~ILfIDEID 286 (438)
T PTZ00361 211 DIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVRELFRVA----EENAPSIVFIDEID 286 (438)
T ss_pred hcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhhcchHHHHHHHHHHHH----HhCCCcEEeHHHHH
Confidence 45899999999999999999999999999999999999999999999999999999999998 88899999999999
Q ss_pred cccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhhcCCCceEEEe--CCCH
Q 012383 223 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 300 (465)
Q Consensus 223 ai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~--~P~~ 300 (465)
+++.+|.... ....+.++.++++++. +++++ ....++.||+|||+++.||++++|+||||+.|+ .|+.
T Consensus 287 ~l~~kR~~~~--sgg~~e~qr~ll~LL~-----~Ldg~---~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~ 356 (438)
T PTZ00361 287 AIGTKRYDAT--SGGEKEIQRTMLELLN-----QLDGF---DSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDE 356 (438)
T ss_pred HHhccCCCCC--CcccHHHHHHHHHHHH-----HHhhh---cccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCH
Confidence 9998775221 1122334445555555 44455 445689999999999999999999999999999 9999
Q ss_pred HHHHHHHHHhccCC----CCChhHHHHHhcCCCchhhHH
Q 012383 301 EDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF 335 (465)
Q Consensus 301 e~R~~Il~~~l~~~----~v~~~~la~lt~gfsgadld~ 335 (465)
++|.+|++.++.+. +++.+.++..+++|+|+||..
T Consensus 357 ~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~ 395 (438)
T PTZ00361 357 KTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKA 395 (438)
T ss_pred HHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHH
Confidence 99999999988654 456779999999999999874
No 33
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.96 E-value=1.3e-29 Score=279.05 Aligned_cols=177 Identities=21% Similarity=0.304 Sum_probs=150.9
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEeccccc
Q 012383 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA 223 (465)
Q Consensus 144 ~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDa 223 (465)
.+.+.|+|+||+||||||||++++++|++++.+|+.++++++.+.+.|.....++.+|..| +...||||||||||+
T Consensus 180 ~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~~~~~~~~~f~~a----~~~~P~IifIDEiD~ 255 (644)
T PRK10733 180 LGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQA----KKAAPCIIFIDEIDA 255 (644)
T ss_pred cCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcccHHHHHHHHHHH----HhcCCcEEEehhHhh
Confidence 4678899999999999999999999999999999999999999999999999999999998 888999999999999
Q ss_pred ccCCCCCCc--ccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhhcCCCceEEEe--CCC
Q 012383 224 GAGRMGGTT--QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 299 (465)
Q Consensus 224 i~~~r~~~~--~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~--~P~ 299 (465)
++.+|+... ......+.++++| . +++++ ....+|+||+|||+++.||+|++||||||+.++ +|+
T Consensus 256 l~~~r~~~~~g~~~~~~~~ln~lL----~-----~mdg~---~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd 323 (644)
T PRK10733 256 VGRQRGAGLGGGHDEREQTLNQML----V-----EMDGF---EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPD 323 (644)
T ss_pred hhhccCCCCCCCchHHHHHHHHHH----H-----hhhcc---cCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCC
Confidence 998875321 1122233444333 2 44466 556789999999999999999999999999999 999
Q ss_pred HHHHHHHHHHhccCC----CCChhHHHHHhcCCCchhhHHH
Q 012383 300 REDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDFF 336 (465)
Q Consensus 300 ~e~R~~Il~~~l~~~----~v~~~~la~lt~gfsgadld~~ 336 (465)
.++|.+|++.|++.. +++...+++.+.||+|+||..+
T Consensus 324 ~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l 364 (644)
T PRK10733 324 VRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANL 364 (644)
T ss_pred HHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHH
Confidence 999999999999765 4556689999999999999754
No 34
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.96 E-value=5.1e-29 Score=257.02 Aligned_cols=180 Identities=25% Similarity=0.346 Sum_probs=152.5
Q ss_pred hCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEeccc
Q 012383 142 SLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDL 221 (465)
Q Consensus 142 ~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEI 221 (465)
...|+.+|+|+|||||||||||++|+++|++++.+|+.+.++++..+|.|+..+.++.+|..+ +...|+||||||+
T Consensus 149 ~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a----~~~~p~il~iDEi 224 (364)
T TIGR01242 149 EEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKYIGEGARLVREIFELA----KEKAPSIIFIDEI 224 (364)
T ss_pred HhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHhhhHHHHHHHHHHHHH----HhcCCcEEEhhhh
Confidence 356889999999999999999999999999999999999999999999999999999999988 8889999999999
Q ss_pred ccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhhcCCCceEEEe--CCC
Q 012383 222 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 299 (465)
Q Consensus 222 Dai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~--~P~ 299 (465)
|.+...+.+.. ......++.++++++. +++++ ....++.||+|||+++.+|++++|+||||+.++ .|+
T Consensus 225 D~l~~~~~~~~--~~~~~~~~~~l~~ll~-----~ld~~---~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~ 294 (364)
T TIGR01242 225 DAIAAKRTDSG--TSGDREVQRTLMQLLA-----ELDGF---DPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPD 294 (364)
T ss_pred hhhccccccCC--CCccHHHHHHHHHHHH-----HhhCC---CCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcC
Confidence 99987765221 1123344455555555 33344 445689999999999999999999999999998 999
Q ss_pred HHHHHHHHHHhccCC----CCChhHHHHHhcCCCchhhHH
Q 012383 300 REDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF 335 (465)
Q Consensus 300 ~e~R~~Il~~~l~~~----~v~~~~la~lt~gfsgadld~ 335 (465)
.++|.+|++.++... +++.+.+++.++||+|+||..
T Consensus 295 ~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~ 334 (364)
T TIGR01242 295 FEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKA 334 (364)
T ss_pred HHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHH
Confidence 999999999988654 356779999999999999963
No 35
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2e-29 Score=261.76 Aligned_cols=209 Identities=19% Similarity=0.259 Sum_probs=174.6
Q ss_pred cccccccccccCCCCCchhHHHHHHHHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccC
Q 012383 109 GLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 188 (465)
Q Consensus 109 ~~r~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~ 188 (465)
..+...|+.+.|.......+.+.+++...++-++..--.+++|+||+||||+|||+|++|||.|.+..|+.++++.|.++
T Consensus 146 ~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK 225 (428)
T KOG0740|consen 146 TLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSK 225 (428)
T ss_pred cCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhh
Confidence 33444457777766666777777777777776666666778999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCC
Q 012383 189 NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPR 268 (465)
Q Consensus 189 ~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~ 268 (465)
|+|+++++||.+|.-| +..+|+||||||||+++..|.+ .......++..++|+++. +. ......+
T Consensus 226 ~~Ge~eK~vralf~vA----r~~qPsvifidEidslls~Rs~-~e~e~srr~ktefLiq~~---------~~-~s~~~dr 290 (428)
T KOG0740|consen 226 YVGESEKLVRALFKVA----RSLQPSVIFIDEIDSLLSKRSD-NEHESSRRLKTEFLLQFD---------GK-NSAPDDR 290 (428)
T ss_pred ccChHHHHHHHHHHHH----HhcCCeEEEechhHHHHhhcCC-cccccchhhhhHHHhhhc---------cc-cCCCCCe
Confidence 9999999999999999 9999999999999999999853 344555677777775442 22 1133469
Q ss_pred ceEEEEeCCCCCCChhhhcCCCceEEEe--CCCHHHHHHHHHHhccCCC-----CChhHHHHHhcCCCchhhH
Q 012383 269 VPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDN-----VADDDIVKLVDTFPGQSID 334 (465)
Q Consensus 269 V~VI~TTN~~~~LD~ALlR~GRfd~~i~--~P~~e~R~~Il~~~l~~~~-----v~~~~la~lt~gfsgadld 334 (465)
|+||+|||+|+.+|.|++| ||-++++ +|+.+.|..|++.++...+ .+.+.++++|+||+|.||.
T Consensus 291 vlvigaTN~P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~ 361 (428)
T KOG0740|consen 291 VLVIGATNRPWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDIT 361 (428)
T ss_pred EEEEecCCCchHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHH
Confidence 9999999999999999999 9999999 9999999999999987652 2345899999999999996
No 36
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.8e-28 Score=272.53 Aligned_cols=209 Identities=18% Similarity=0.247 Sum_probs=171.1
Q ss_pred cccccccccCCCCCchhHHHHHHHHHHHh-hhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHh-----CCceEEecccc
Q 012383 111 RTYNLDNTIDGLYIAPAFMDKLVVHITKN-FMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGE 184 (465)
Q Consensus 111 r~~~~~~~~~~~~i~~~~~d~~~~~i~k~-~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~el-----g~~~i~vs~s~ 184 (465)
+..+|+.+.|-..+.+.+.+-+....... +....++.||+|+|+|||||||||++|+++|..+ .+.|++-++.+
T Consensus 260 ~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD 339 (1080)
T KOG0732|consen 260 SSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGAD 339 (1080)
T ss_pred cccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCch
Confidence 33456777776555555544333332222 2235699999999999999999999999999997 45788899999
Q ss_pred cccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccC
Q 012383 185 LESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE 264 (465)
Q Consensus 185 L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~ 264 (465)
..++|+|+.++.++.+|++| ++.+|+|||+||||-+++.|+ ..|......++. ||+.++| |+ .
T Consensus 340 ~lskwvgEaERqlrllFeeA----~k~qPSIIffdeIdGlapvrS-skqEqih~SIvS-TLLaLmd--------Gl---d 402 (1080)
T KOG0732|consen 340 CLSKWVGEAERQLRLLFEEA----QKTQPSIIFFDEIDGLAPVRS-SKQEQIHASIVS-TLLALMD--------GL---D 402 (1080)
T ss_pred hhccccCcHHHHHHHHHHHH----hccCceEEecccccccccccc-chHHHhhhhHHH-HHHHhcc--------CC---C
Confidence 99999999999999999999 999999999999999999985 334444444444 6767777 77 7
Q ss_pred CCCCceEEEEeCCCCCCChhhhcCCCceEEEe--CCCHHHHHHHHHHhccCCC--CC---hhHHHHHhcCCCchhhHHH
Q 012383 265 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDN--VA---DDDIVKLVDTFPGQSIDFF 336 (465)
Q Consensus 265 ~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~--~P~~e~R~~Il~~~l~~~~--v~---~~~la~lt~gfsgadld~~ 336 (465)
.++.|+||+||||++.+||||+||||||+.+| +|+.++|.+|+..+.++.. +. .+.+++.+.||.|+||.+.
T Consensus 403 sRgqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaL 481 (1080)
T KOG0732|consen 403 SRGQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKAL 481 (1080)
T ss_pred CCCceEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHH
Confidence 78999999999999999999999999999999 9999999999999987753 33 3488999999999998754
No 37
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.95 E-value=3.6e-27 Score=263.43 Aligned_cols=207 Identities=21% Similarity=0.279 Sum_probs=162.9
Q ss_pred ccccccccCCCCCchhHHHHHHHHHHH-hhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCC
Q 012383 112 TYNLDNTIDGLYIAPAFMDKLVVHITK-NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNA 190 (465)
Q Consensus 112 ~~~~~~~~~~~~i~~~~~d~~~~~i~k-~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~ 190 (465)
.++|+++.|-......+.+.+...+.. ......++.+|+|+|||||||||||++|+++|++++.+++.++++++.+++.
T Consensus 174 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~~ 253 (733)
T TIGR01243 174 KVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKYY 253 (733)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcccc
Confidence 345566555433333333222222221 1223568899999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCce
Q 012383 191 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 270 (465)
Q Consensus 191 Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~ 270 (465)
|+++..++.+|+.| ....|+||||||||++++++... ..... ..+...|+++++ +. ....+++
T Consensus 254 g~~~~~l~~lf~~a----~~~~p~il~iDEid~l~~~r~~~-~~~~~-~~~~~~Ll~~ld--------~l---~~~~~vi 316 (733)
T TIGR01243 254 GESEERLREIFKEA----EENAPSIIFIDEIDAIAPKREEV-TGEVE-KRVVAQLLTLMD--------GL---KGRGRVI 316 (733)
T ss_pred cHHHHHHHHHHHHH----HhcCCcEEEeehhhhhcccccCC-cchHH-HHHHHHHHHHhh--------cc---ccCCCEE
Confidence 99999999999998 78899999999999999887522 22222 334445666666 44 3456789
Q ss_pred EEEEeCCCCCCChhhhcCCCceEEEe--CCCHHHHHHHHHHhccCCC----CChhHHHHHhcCCCchhhHH
Q 012383 271 IIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDN----VADDDIVKLVDTFPGQSIDF 335 (465)
Q Consensus 271 VI~TTN~~~~LD~ALlR~GRfd~~i~--~P~~e~R~~Il~~~l~~~~----v~~~~la~lt~gfsgadld~ 335 (465)
||+|||+++.||++++|+||||+.++ +|+.++|.+|++.+.+... ++.+.+++.++||+|+++..
T Consensus 317 vI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~ 387 (733)
T TIGR01243 317 VIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAA 387 (733)
T ss_pred EEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHH
Confidence 99999999999999999999999988 9999999999998887653 45678999999999999874
No 38
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.90 E-value=2.1e-23 Score=181.58 Aligned_cols=130 Identities=27% Similarity=0.407 Sum_probs=111.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCChHHHHHHHHHHHHHHHHhCC-ceEEEecccccccCCCCC
Q 012383 152 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGK-MCCLMINDLDAGAGRMGG 230 (465)
Q Consensus 152 lLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~-p~ILfIDEIDai~~~r~~ 230 (465)
||||||||||||++|+.+|+.++.+++.++++++.+.+.++..+.++..|.++ +... |+||||||+|.+....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~vl~iDe~d~l~~~~-- 74 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKA----KKSAKPCVLFIDEIDKLFPKS-- 74 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHH----HHTSTSEEEEEETGGGTSHHC--
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccc----cccccceeeeeccchhccccc--
Confidence 79999999999999999999999999999999999999999999999999998 7666 9999999999998876
Q ss_pred CcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhhcCCCceEEEeCC
Q 012383 231 TTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 298 (465)
Q Consensus 231 ~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~~P 298 (465)
........+.+.+.|++.+++.. ....+++||+|||+++.++++++| +||++.++.|
T Consensus 75 ~~~~~~~~~~~~~~L~~~l~~~~----------~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~ 131 (132)
T PF00004_consen 75 QPSSSSFEQRLLNQLLSLLDNPS----------SKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFP 131 (132)
T ss_dssp STSSSHHHHHHHHHHHHHHHTTT----------TTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-
T ss_pred ccccccccccccceeeecccccc----------cccccceeEEeeCChhhCCHhHHh-CCCcEEEEcC
Confidence 22344555666667888887221 124679999999999999999999 9999999854
No 39
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1e-21 Score=203.72 Aligned_cols=199 Identities=18% Similarity=0.195 Sum_probs=141.6
Q ss_pred ccccccCCCCCchhHHHHHHHHH-HHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCC
Q 012383 114 NLDNTIDGLYIAPAFMDKLVVHI-TKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGE 192 (465)
Q Consensus 114 ~~~~~~~~~~i~~~~~d~~~~~i-~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge 192 (465)
+|+.+.-+..+..++++.+..-+ -+.|.+.-|..--+|-|||||||||||+++.|+|++++..++.+..++...
T Consensus 199 tF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~----- 273 (457)
T KOG0743|consen 199 TFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKL----- 273 (457)
T ss_pred CccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccC-----
Confidence 34555555445555544433332 245666779888999999999999999999999999999999988876542
Q ss_pred hHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCccc----c-hhhHHHHHHHHHhhcCCccccCCCccccCCCC
Q 012383 193 PAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQY----T-VNNQMVNATLMNIADNPTCVQLPGMYNKEENP 267 (465)
Q Consensus 193 ~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~----~-v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~ 267 (465)
... +|.+... ....+||+|+|||+-+.-++..... . ..+...-.=|+|.+| |.|..+...
T Consensus 274 n~d-Lr~LL~~------t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiD--------GlwSscg~E 338 (457)
T KOG0743|consen 274 DSD-LRHLLLA------TPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLD--------GLWSSCGDE 338 (457)
T ss_pred cHH-HHHHHHh------CCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhc--------cccccCCCc
Confidence 222 5555443 4567899999999986543311111 0 012233333556666 998877655
Q ss_pred CceEEEEeCCCCCCChhhhcCCCceEEEe--CCCHHHHHHHHHHhccCCC--CChhHHHHHhcCC--Cchhh
Q 012383 268 RVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDN--VADDDIVKLVDTF--PGQSI 333 (465)
Q Consensus 268 ~V~VI~TTN~~~~LD~ALlR~GRfd~~i~--~P~~e~R~~Il~~~l~~~~--v~~~~la~lt~gf--sgadl 333 (465)
+ +||.|||+++.|||||+||||||.+|+ .-+.++-..+++.|+.-.. .=.++++++.++- +.|++
T Consensus 339 R-IivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~h~L~~eie~l~~~~~~tPA~V 409 (457)
T KOG0743|consen 339 R-IIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEEDHRLFDEIERLIEETEVTPAQV 409 (457)
T ss_pred e-EEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCCcchhHHHHHHhhcCccCHHHH
Confidence 5 688899999999999999999999999 7899999999999997743 3355787777776 44444
No 40
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=4.1e-20 Score=184.55 Aligned_cols=183 Identities=19% Similarity=0.304 Sum_probs=139.5
Q ss_pred cccccCCCCCchhHHHHHHHH--HHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCC---------ceEEeccc
Q 012383 115 LDNTIDGLYIAPAFMDKLVVH--ITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI---------NPIMMSAG 183 (465)
Q Consensus 115 ~~~~~~~~~i~~~~~d~~~~~--i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~---------~~i~vs~s 183 (465)
|+++.-+..++.+++.-.... +...-....-+...+-||||||||||||+|||++|+++.+ ..+.++..
T Consensus 141 WEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh 220 (423)
T KOG0744|consen 141 WESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH 220 (423)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh
Confidence 366666666666655432211 1111122334566789999999999999999999999754 47779999
Q ss_pred ccccCCCCChHHHHHHHHHHHHHHHH-hCCceEEEecccccccCCCC---CCcccchhhHHHHHHHHHhhcCCccccCCC
Q 012383 184 ELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMG---GTTQYTVNNQMVNATLMNIADNPTCVQLPG 259 (465)
Q Consensus 184 ~L~s~~~Ge~~k~Ir~~F~~A~~~i~-~~~p~ILfIDEIDai~~~r~---~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g 259 (465)
.|.++|.+|+++++..+|++..+++. .+...+++|||+++++..|. ..+..+-.-+.+++.|. |+|.
T Consensus 221 sLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLT---------QlDr 291 (423)
T KOG0744|consen 221 SLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLT---------QLDR 291 (423)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHH---------HHHH
Confidence 99999999999999999999988888 67778899999999976663 22233444456665553 3333
Q ss_pred ccccCCCCCceEEEEeCCCCCCChhhhcCCCceEEEe--CCCHHHHHHHHHHhc
Q 012383 260 MYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIF 311 (465)
Q Consensus 260 ~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~--~P~~e~R~~Il~~~l 311 (465)
. ...++|.+.+|+|-.+.||.||.- |-|-+.+ .|+.+.|.+|++..+
T Consensus 292 l---K~~~NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~Ilksci 340 (423)
T KOG0744|consen 292 L---KRYPNVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCI 340 (423)
T ss_pred h---ccCCCEEEEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHH
Confidence 4 778999999999999999999985 8888888 999999999988776
No 41
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=6.5e-19 Score=180.20 Aligned_cols=194 Identities=16% Similarity=0.250 Sum_probs=142.8
Q ss_pred cCCCCCchhHHHHHHHHHHHhhhhCC-CCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCChHHHH
Q 012383 119 IDGLYIAPAFMDKLVVHITKNFMSLP-NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLI 197 (465)
Q Consensus 119 ~~~~~i~~~~~d~~~~~i~k~~l~~~-~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge~~k~I 197 (465)
.++.-++|.+ ++.+.+++.--.... +-.|-+.||+|||||||||+.|+-+|...|+.+-++.++++. ..--+....|
T Consensus 354 l~~ViL~psL-e~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVA-PlG~qaVTki 431 (630)
T KOG0742|consen 354 LEGVILHPSL-EKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVA-PLGAQAVTKI 431 (630)
T ss_pred cCCeecCHHH-HHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcc-ccchHHHHHH
Confidence 3454555654 355566655444322 334558999999999999999999999999999999998874 2222446789
Q ss_pred HHHHHHHHHHHHh-CCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeC
Q 012383 198 RQRYREAADIIKK-GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGN 276 (465)
Q Consensus 198 r~~F~~A~~~i~~-~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN 276 (465)
+++|+.| ++ .+--+|||||.|++...|..+--.......++.+|+ ........++++.+||
T Consensus 432 H~lFDWa----kkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLf--------------RTGdqSrdivLvlAtN 493 (630)
T KOG0742|consen 432 HKLFDWA----KKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLF--------------RTGDQSRDIVLVLATN 493 (630)
T ss_pred HHHHHHH----hhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHH--------------HhcccccceEEEeccC
Confidence 9999999 74 445689999999998887533223333445666662 2234557789999999
Q ss_pred CCCCCChhhhcCCCceEEEe--CCCHHHHHHHHHHhccCC-------C-----------------C---C----hhHHHH
Q 012383 277 DFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRND-------N-----------------V---A----DDDIVK 323 (465)
Q Consensus 277 ~~~~LD~ALlR~GRfd~~i~--~P~~e~R~~Il~~~l~~~-------~-----------------v---~----~~~la~ 323 (465)
+|..||.|+- .|+|..++ +|..++|..++..|+.+. + + + ..++++
T Consensus 494 rpgdlDsAV~--DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAk 571 (630)
T KOG0742|consen 494 RPGDLDSAVN--DRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAK 571 (630)
T ss_pred CccchhHHHH--hhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHH
Confidence 9999999997 49999999 999999999988876321 0 0 1 127899
Q ss_pred HhcCCCchhhH
Q 012383 324 LVDTFPGQSID 334 (465)
Q Consensus 324 lt~gfsgadld 334 (465)
.|+||||.+|.
T Consensus 572 kTeGfSGREia 582 (630)
T KOG0742|consen 572 KTEGFSGREIA 582 (630)
T ss_pred hccCCcHHHHH
Confidence 99999999986
No 42
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=3.8e-18 Score=184.63 Aligned_cols=148 Identities=21% Similarity=0.308 Sum_probs=124.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccC---------CCCChHHHHHHHHHHHHHHHHhCCceEEEecc
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG---------NAGEPAKLIRQRYREAADIIKKGKMCCLMIND 220 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~---------~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDE 220 (465)
.++||+||||+|||+|+++||+.+|..|+.++.+.+.+. |+|.-...|-+-..+| ....| +++|||
T Consensus 351 pILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka----~~~NP-v~LLDE 425 (782)
T COG0466 351 PILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKA----GVKNP-VFLLDE 425 (782)
T ss_pred cEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccccccccCChHHHHHHHHh----CCcCC-eEEeec
Confidence 489999999999999999999999999999998877554 8887655555666777 55555 899999
Q ss_pred cccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccC--CCCCceEEEEeCCCCCCChhhhcCCCceEEEe-C
Q 012383 221 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE--ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-A 297 (465)
Q Consensus 221 IDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~--~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~-~ 297 (465)
||++..+..|... +.|+++||+.+|..+...|... +.++|++|+|+|..+.||.||+- ||+.+-. -
T Consensus 426 IDKm~ss~rGDPa---------SALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlD--RMEiI~lsg 494 (782)
T COG0466 426 IDKMGSSFRGDPA---------SALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLD--RMEVIRLSG 494 (782)
T ss_pred hhhccCCCCCChH---------HHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCChHHhc--ceeeeeecC
Confidence 9999887654433 5788999999999888877764 45899999999999999999985 9998666 8
Q ss_pred CCHHHHHHHHHHhccC
Q 012383 298 PTREDRIGVCKGIFRN 313 (465)
Q Consensus 298 P~~e~R~~Il~~~l~~ 313 (465)
.+.++..+|.+.|+-+
T Consensus 495 Yt~~EKl~IAk~~LiP 510 (782)
T COG0466 495 YTEDEKLEIAKRHLIP 510 (782)
T ss_pred CChHHHHHHHHHhcch
Confidence 8999999999999854
No 43
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1.8e-17 Score=178.85 Aligned_cols=168 Identities=18% Similarity=0.236 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccC---------CCCChHHHHH
Q 012383 128 FMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG---------NAGEPAKLIR 198 (465)
Q Consensus 128 ~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~---------~~Ge~~k~Ir 198 (465)
..+++..+|+-.- +.|.-.-++++|+||||+|||+++++||..+|..|+..+.+.+.+. |+|.-...+-
T Consensus 419 VKeRILEfiAV~k--Lrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiI 496 (906)
T KOG2004|consen 419 VKERILEFIAVGK--LRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKII 496 (906)
T ss_pred HHHHHHHHHHHHh--hcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceeeeccCChHHH
Confidence 3344444444333 3344456799999999999999999999999999999998877543 8887555554
Q ss_pred HHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCcccc--CCCCCceEEEEeC
Q 012383 199 QRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNK--EENPRVPIIVTGN 276 (465)
Q Consensus 199 ~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~--~~~~~V~VI~TTN 276 (465)
+-.++. ....| +++|||||++.....|.- .+.|+++||+.+|..+-..|.. .+.++|++|||+|
T Consensus 497 q~LK~v----~t~NP-liLiDEvDKlG~g~qGDP---------asALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN 562 (906)
T KOG2004|consen 497 QCLKKV----KTENP-LILIDEVDKLGSGHQGDP---------ASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTAN 562 (906)
T ss_pred HHHHhh----CCCCc-eEEeehhhhhCCCCCCCh---------HHHHHHhcChhhccchhhhccccccchhheEEEEecc
Confidence 555655 55555 899999999984322222 2578899999998887776665 3569999999999
Q ss_pred CCCCCChhhhcCCCceEEEe-CCCHHHHHHHHHHhccC
Q 012383 277 DFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRN 313 (465)
Q Consensus 277 ~~~~LD~ALlR~GRfd~~i~-~P~~e~R~~Il~~~l~~ 313 (465)
..+.|++||+- ||+.+-. -...++..+|.+.|+-+
T Consensus 563 ~idtIP~pLlD--RMEvIelsGYv~eEKv~IA~~yLip 598 (906)
T KOG2004|consen 563 VIDTIPPPLLD--RMEVIELSGYVAEEKVKIAERYLIP 598 (906)
T ss_pred ccccCChhhhh--hhheeeccCccHHHHHHHHHHhhhh
Confidence 99999999985 9988555 77889999999999854
No 44
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.72 E-value=6.9e-17 Score=159.59 Aligned_cols=144 Identities=16% Similarity=0.141 Sum_probs=105.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHh---C----CceEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEeccc
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKM---G----INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDL 221 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~el---g----~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEI 221 (465)
+..+|||||||||||++|+++|+++ + .+++.++++++.++|+|+.+..++++|.+| .++||||||+
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~VL~IDE~ 114 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLVGEYIGHTAQKTREVIKKA-------LGGVLFIDEA 114 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHhhhhhccchHHHHHHHHHhc-------cCCEEEEech
Confidence 3578999999999999999999874 2 368889999999999999999999999877 3579999999
Q ss_pred ccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC-----CCCChhhhcCCCceEEEe
Q 012383 222 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF-----STLYAPLIRDGRMEKFYW 296 (465)
Q Consensus 222 Dai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~-----~~LD~ALlR~GRfd~~i~ 296 (465)
|.+.... . .. .++....+|++.++ .....+.+|++++.. ..++|+|.+ ||...+.
T Consensus 115 ~~L~~~~--~--~~-~~~~~i~~Ll~~~e-------------~~~~~~~vila~~~~~~~~~~~~~p~L~s--Rf~~~i~ 174 (261)
T TIGR02881 115 YSLARGG--E--KD-FGKEAIDTLVKGME-------------DNRNEFVLILAGYSDEMDYFLSLNPGLRS--RFPISID 174 (261)
T ss_pred hhhccCC--c--cc-hHHHHHHHHHHHHh-------------ccCCCEEEEecCCcchhHHHHhcChHHHh--ccceEEE
Confidence 9986421 1 11 12233345655555 223445666665432 247889987 8877666
Q ss_pred --CCCHHHHHHHHHHhccCCC--CChh
Q 012383 297 --APTREDRIGVCKGIFRNDN--VADD 319 (465)
Q Consensus 297 --~P~~e~R~~Il~~~l~~~~--v~~~ 319 (465)
.++.+++.+|++.++...+ ++.+
T Consensus 175 f~~~~~~el~~Il~~~~~~~~~~l~~~ 201 (261)
T TIGR02881 175 FPDYTVEELMEIAERMVKEREYKLTEE 201 (261)
T ss_pred ECCCCHHHHHHHHHHHHHHcCCccCHH
Confidence 6788999999999887554 4444
No 45
>CHL00181 cbbX CbbX; Provisional
Probab=99.72 E-value=5.4e-17 Score=163.09 Aligned_cols=145 Identities=14% Similarity=0.149 Sum_probs=109.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHh---CC----ceEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEeccc
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKM---GI----NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDL 221 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~el---g~----~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEI 221 (465)
+..+||+||||||||++|+++|+.+ |. +++.++.+++.++|+|+++..++.+|++| .++||||||+
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~l~~a-------~ggVLfIDE~ 131 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQYIGHTAPKTKEVLKKA-------MGGVLFIDEA 131 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHHhccchHHHHHHHHHc-------cCCEEEEEcc
Confidence 3458999999999999999999985 22 58899999999999999888887777776 3579999999
Q ss_pred ccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC-----CCChhhhcCCCceEEEe
Q 012383 222 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----TLYAPLIRDGRMEKFYW 296 (465)
Q Consensus 222 Dai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~-----~LD~ALlR~GRfd~~i~ 296 (465)
|.+...++. ......+..+|+.+++ ....++.||++++... .++|+|.| ||+..++
T Consensus 132 ~~l~~~~~~----~~~~~e~~~~L~~~me-------------~~~~~~~vI~ag~~~~~~~~~~~np~L~s--R~~~~i~ 192 (287)
T CHL00181 132 YYLYKPDNE----RDYGSEAIEILLQVME-------------NQRDDLVVIFAGYKDRMDKFYESNPGLSS--RIANHVD 192 (287)
T ss_pred chhccCCCc----cchHHHHHHHHHHHHh-------------cCCCCEEEEEeCCcHHHHHHHhcCHHHHH--hCCceEE
Confidence 998754321 1123455567777776 2235577778776422 34689988 8988777
Q ss_pred --CCCHHHHHHHHHHhccCCC--CChh
Q 012383 297 --APTREDRIGVCKGIFRNDN--VADD 319 (465)
Q Consensus 297 --~P~~e~R~~Il~~~l~~~~--v~~~ 319 (465)
.++.+++.+|++.++.... ++.+
T Consensus 193 F~~~t~~el~~I~~~~l~~~~~~l~~~ 219 (287)
T CHL00181 193 FPDYTPEELLQIAKIMLEEQQYQLTPE 219 (287)
T ss_pred cCCcCHHHHHHHHHHHHHHhcCCCChh
Confidence 8899999999999987643 4444
No 46
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.72 E-value=1.4e-16 Score=179.61 Aligned_cols=165 Identities=20% Similarity=0.299 Sum_probs=119.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccc---------cCCCCChHHHHHHHHHHHHHHHHhCCceEEEecc
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE---------SGNAGEPAKLIRQRYREAADIIKKGKMCCLMIND 220 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~---------s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDE 220 (465)
.++|||||||||||++|++||+.++.+++.++.+.+. ..|+|.....+.+.|..+ ....| ||||||
T Consensus 348 ~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~~~l~~~----~~~~~-villDE 422 (775)
T TIGR00763 348 PILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKA----KTKNP-LFLLDE 422 (775)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCCchHHHHHHHh----CcCCC-EEEEec
Confidence 4799999999999999999999999999998765442 357888777777788777 44444 899999
Q ss_pred cccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccc--cCCCCCceEEEEeCCCCCCChhhhcCCCceEEEe-C
Q 012383 221 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYN--KEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-A 297 (465)
Q Consensus 221 IDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~--~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~-~ 297 (465)
||++.....+. ....|++++|+.++..+...+. ....+++++|+|||..+.|+++|++ ||+.+.. .
T Consensus 423 idk~~~~~~~~---------~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~~L~~--R~~vi~~~~ 491 (775)
T TIGR00763 423 IDKIGSSFRGD---------PASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSIDTIPRPLLD--RMEVIELSG 491 (775)
T ss_pred hhhcCCccCCC---------HHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCchhCCHHHhC--CeeEEecCC
Confidence 99998643211 1346777888543322221111 1234789999999999999999997 8875433 8
Q ss_pred CCHHHHHHHHHHhcc-----C-------CCCChhHHHHHhcCCCc
Q 012383 298 PTREDRIGVCKGIFR-----N-------DNVADDDIVKLVDTFPG 330 (465)
Q Consensus 298 P~~e~R~~Il~~~l~-----~-------~~v~~~~la~lt~gfsg 330 (465)
|+.+++.+|++.++. . ..++.+.+..++.+|+.
T Consensus 492 ~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~ 536 (775)
T TIGR00763 492 YTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTR 536 (775)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcCh
Confidence 899999999988761 1 13455667777666653
No 47
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.71 E-value=1.5e-16 Score=159.66 Aligned_cols=172 Identities=10% Similarity=0.075 Sum_probs=120.9
Q ss_pred cccCCCCCchhHHHHHHHHHHHhhhhCCCCC---CCeEEEEEcCCCCcHHHHHHHHHHHhC-------CceEEecccccc
Q 012383 117 NTIDGLYIAPAFMDKLVVHITKNFMSLPNIK---VPLILGIWGGKGQGKSFQCELVFAKMG-------INPIMMSAGELE 186 (465)
Q Consensus 117 ~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~---~p~glLL~GPPGtGKT~LAraIA~elg-------~~~i~vs~s~L~ 186 (465)
+++|-..+...+.+-.............|++ +..++||+||||||||++|+++|+.+. -+++.++++++.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~ 102 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLV 102 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHh
Confidence 4555544555544333322222222334444 345899999999999999999998852 268899999999
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCC
Q 012383 187 SGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEEN 266 (465)
Q Consensus 187 s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~ 266 (465)
++|.|+++..++++|++| .+++|||||+|.+.+.+.. ......+...|+++++ ...
T Consensus 103 ~~~~g~~~~~~~~~~~~a-------~~gvL~iDEi~~L~~~~~~----~~~~~~~~~~Ll~~le-------------~~~ 158 (284)
T TIGR02880 103 GQYIGHTAPKTKEILKRA-------MGGVLFIDEAYYLYRPDNE----RDYGQEAIEILLQVME-------------NQR 158 (284)
T ss_pred HhhcccchHHHHHHHHHc-------cCcEEEEechhhhccCCCc----cchHHHHHHHHHHHHh-------------cCC
Confidence 999999988888888876 4589999999998654321 1123455567777776 223
Q ss_pred CCceEEEEeCCC--C---CCChhhhcCCCceEEEe--CCCHHHHHHHHHHhccCC
Q 012383 267 PRVPIIVTGNDF--S---TLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRND 314 (465)
Q Consensus 267 ~~V~VI~TTN~~--~---~LD~ALlR~GRfd~~i~--~P~~e~R~~Il~~~l~~~ 314 (465)
.++.||++++.. + .++|+|.| ||+..+. .++.+++..|++.++...
T Consensus 159 ~~~~vI~a~~~~~~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~ 211 (284)
T TIGR02880 159 DDLVVILAGYKDRMDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQ 211 (284)
T ss_pred CCEEEEEeCCcHHHHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHh
Confidence 567788887542 3 24799998 8887777 778999999999998765
No 48
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=3.3e-16 Score=167.84 Aligned_cols=175 Identities=21% Similarity=0.241 Sum_probs=148.7
Q ss_pred CCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccc
Q 012383 143 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 222 (465)
Q Consensus 143 ~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEID 222 (465)
..++.+|+++++|||||||||++++++|.+ +..+..+++++..++|.|+++..++..|..+ +...|+++++||+|
T Consensus 12 ~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a----~~~~~~ii~~d~~~ 86 (494)
T COG0464 12 KLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEA----EKLAPSIIFIDEID 86 (494)
T ss_pred HhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHH----HHhCCCeEeechhh
Confidence 357889999999999999999999999999 7777889999999999999999999999999 88899999999999
Q ss_pred cccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhhcCCCceEEEe--CCCH
Q 012383 223 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 300 (465)
Q Consensus 223 ai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~--~P~~ 300 (465)
++.+.+.. ....+..+.+.+ |..+++ +.. ... +.+++.||++..+|++++|+|||++.+. .|+.
T Consensus 87 ~~~~~~~~-~~~~~~~~v~~~-l~~~~d--------~~~---~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 152 (494)
T COG0464 87 ALAPKRSS-DQGEVERRVVAQ-LLALMD--------GLK---RGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDE 152 (494)
T ss_pred hcccCccc-cccchhhHHHHH-HHHhcc--------ccc---CCc-eEEEeecCCccccChhHhCccccceeeecCCCCH
Confidence 99999874 334444455544 444444 442 345 8999999999999999999999999999 9999
Q ss_pred HHHHHHHHHhccCC----CCChhHHHHHhcCCCchhhHHH
Q 012383 301 EDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDFF 336 (465)
Q Consensus 301 e~R~~Il~~~l~~~----~v~~~~la~lt~gfsgadld~~ 336 (465)
..|.+|+..+.... +.+.+.++..+.+|.++++..+
T Consensus 153 ~~~~ei~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l 192 (494)
T COG0464 153 AGRLEILQIHTRLMFLGPPGTGKTLAARTVGKSGADLGAL 192 (494)
T ss_pred HHHHHHHHHHHhcCCCcccccHHHHHHhcCCccHHHHHHH
Confidence 99999987776543 4567799999999999999754
No 49
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=2.3e-16 Score=170.15 Aligned_cols=176 Identities=19% Similarity=0.197 Sum_probs=143.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHhC----CceEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccc
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKMG----INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 222 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~elg----~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEID 222 (465)
-.+-.|||+||+|||||.|+++++++.. +++..++++.+...-.....+.++..|..| .+.+|+||++|++|
T Consensus 429 ~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~----~~~~PSiIvLDdld 504 (952)
T KOG0735|consen 429 FRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEA----LWYAPSIIVLDDLD 504 (952)
T ss_pred cccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHH----HhhCCcEEEEcchh
Confidence 3456899999999999999999999954 567789999887555555566677777777 89999999999999
Q ss_pred cccCC-CCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhhcCCCceEEEe--CCC
Q 012383 223 AGAGR-MGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 299 (465)
Q Consensus 223 ai~~~-r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~--~P~ 299 (465)
++++. ...+++..+..+++..+|.+++. .+ . ..+..|.+|+|.+....|.|-|..+++|+..+. .|+
T Consensus 505 ~l~~~s~~e~~q~~~~~~rla~flnqvi~--------~y-~-~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~ 574 (952)
T KOG0735|consen 505 CLASASSNENGQDGVVSERLAAFLNQVIK--------IY-L-KRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPA 574 (952)
T ss_pred hhhccCcccCCcchHHHHHHHHHHHHHHH--------HH-H-ccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcc
Confidence 99983 23456778888888888877776 12 1 334668999999999999999999999999888 889
Q ss_pred HHHHHHHHHHhccCCCCC-----hhHHHHHhcCCCchhhHHH
Q 012383 300 REDRIGVCKGIFRNDNVA-----DDDIVKLVDTFPGQSIDFF 336 (465)
Q Consensus 300 ~e~R~~Il~~~l~~~~v~-----~~~la~lt~gfsgadld~~ 336 (465)
..+|.+|++.++.+...+ .+-++..|+||..-|+..|
T Consensus 575 ~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~if 616 (952)
T KOG0735|consen 575 VTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIF 616 (952)
T ss_pred hhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHH
Confidence 999999999888765422 2357899999999999865
No 50
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=2.7e-15 Score=163.11 Aligned_cols=175 Identities=14% Similarity=0.151 Sum_probs=143.8
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccc
Q 012383 145 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAG 224 (465)
Q Consensus 145 ~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai 224 (465)
+++....+||+|+||||||++++++|.++|+|++.+++.++.+...+..+..+...|.+| +...|+||||-++|.+
T Consensus 427 ~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a----~~~~pavifl~~~dvl 502 (953)
T KOG0736|consen 427 LLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRA----RRCSPAVLFLRNLDVL 502 (953)
T ss_pred ccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHH----hhcCceEEEEecccee
Confidence 445567899999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred cCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhhcCCCceEEEeCCCHHHHH
Q 012383 225 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRI 304 (465)
Q Consensus 225 ~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~~P~~e~R~ 304 (465)
..+..++.. ..+...+-.++. ..+.....++++||+||+..+.|++.+++..+++..+..|+.++|.
T Consensus 503 ~id~dgged-----~rl~~~i~~~ls--------~e~~~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl 569 (953)
T KOG0736|consen 503 GIDQDGGED-----ARLLKVIRHLLS--------NEDFKFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRL 569 (953)
T ss_pred eecCCCchh-----HHHHHHHHHHHh--------cccccCCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHH
Confidence 866654322 222222211111 1112245688999999999999999999988888877799999999
Q ss_pred HHHHHhccCCCCCh----hHHHHHhcCCCchhhHHH
Q 012383 305 GVCKGIFRNDNVAD----DDIVKLVDTFPGQSIDFF 336 (465)
Q Consensus 305 ~Il~~~l~~~~v~~----~~la~lt~gfsgadld~~ 336 (465)
+|++.|+....++. ..++..+.+|+-++++-+
T Consensus 570 ~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l 605 (953)
T KOG0736|consen 570 EILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEAL 605 (953)
T ss_pred HHHHHHHhccccchHHHHHHHHHhcCCCCHHHHHHH
Confidence 99999998776664 489999999999999743
No 51
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.64 E-value=1.6e-15 Score=169.91 Aligned_cols=164 Identities=18% Similarity=0.204 Sum_probs=120.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHh----------CCceEEecccccc--cCCCCChHHHHHHHHHHHHHHHHhCCceEE
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKKGKMCCL 216 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~el----------g~~~i~vs~s~L~--s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~IL 216 (465)
..+++||||||||||++|+++|+.+ +..++.++.+.+. .+|.|+.+..++.+|+++ +...++||
T Consensus 203 ~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~----~~~~~~IL 278 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEI----EKEPNAIL 278 (731)
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHH----hccCCeEE
Confidence 4578999999999999999999997 7788889988887 578999999999999998 66679999
Q ss_pred EecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC-----CCCChhhhcCCCc
Q 012383 217 MINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF-----STLYAPLIRDGRM 291 (465)
Q Consensus 217 fIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~-----~~LD~ALlR~GRf 291 (465)
||||||.+.+.+..... ...+..+|...+. ...+.+|++||.. -.+|+||.| ||
T Consensus 279 fiDEih~l~~~g~~~~~----~~~~~~~L~~~l~---------------~g~i~~IgaTt~~e~~~~~~~d~al~r--Rf 337 (731)
T TIGR02639 279 FIDEIHTIVGAGATSGG----SMDASNLLKPALS---------------SGKLRCIGSTTYEEYKNHFEKDRALSR--RF 337 (731)
T ss_pred EEecHHHHhccCCCCCc----cHHHHHHHHHHHh---------------CCCeEEEEecCHHHHHHHhhhhHHHHH--hC
Confidence 99999999876431111 0112223322222 3568899999973 358999999 88
Q ss_pred eEEEe-CCCHHHHHHHHHHhccC------CCCChh---HHHHHhcCC------CchhhHHHH
Q 012383 292 EKFYW-APTREDRIGVCKGIFRN------DNVADD---DIVKLVDTF------PGQSIDFFG 337 (465)
Q Consensus 292 d~~i~-~P~~e~R~~Il~~~l~~------~~v~~~---~la~lt~gf------sgadld~~~ 337 (465)
..+.. .|+.+++.+|++.+... ..++.+ .++.++..| ++..|+++.
T Consensus 338 ~~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~lld 399 (731)
T TIGR02639 338 QKIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAIDVID 399 (731)
T ss_pred ceEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHHHHHHH
Confidence 86444 99999999999865532 234544 456666665 344466543
No 52
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.58 E-value=3.7e-14 Score=159.67 Aligned_cols=163 Identities=20% Similarity=0.300 Sum_probs=119.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhCCceEEeccccccc---------CCCCChHHHHHHHHHHHHHHHHhCCceEEEecc
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES---------GNAGEPAKLIRQRYREAADIIKKGKMCCLMIND 220 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s---------~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDE 220 (465)
..++|+||||||||++++++|+.++.+++.++.+...+ .|.|.....+.+.+..+ ... ..||||||
T Consensus 350 ~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~----~~~-~~villDE 424 (784)
T PRK10787 350 PILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKV----GVK-NPLFLLDE 424 (784)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhc----CCC-CCEEEEEC
Confidence 47999999999999999999999999999888665432 36666555555556655 333 34899999
Q ss_pred cccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCcccc--CCCCCceEEEEeCCCCCCChhhhcCCCceEEEe-C
Q 012383 221 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNK--EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-A 297 (465)
Q Consensus 221 IDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~--~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~-~ 297 (465)
||++.....+. ....|++++|+.++..+...+.. .+.++|.+|+|||.. .|++||+. ||+.+.+ .
T Consensus 425 idk~~~~~~g~---------~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~-~i~~aLl~--R~~ii~~~~ 492 (784)
T PRK10787 425 IDKMSSDMRGD---------PASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM-NIPAPLLD--RMEVIRLSG 492 (784)
T ss_pred hhhcccccCCC---------HHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCC-CCCHHHhc--ceeeeecCC
Confidence 99987653211 23578888997776665544433 356899999999998 59999996 9987555 8
Q ss_pred CCHHHHHHHHHHhccC------------CCCChhHHHHHhcCCC
Q 012383 298 PTREDRIGVCKGIFRN------------DNVADDDIVKLVDTFP 329 (465)
Q Consensus 298 P~~e~R~~Il~~~l~~------------~~v~~~~la~lt~gfs 329 (465)
++.++..+|++.|+.. -.++.+.+..++.+|+
T Consensus 493 ~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt 536 (784)
T PRK10787 493 YTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYT 536 (784)
T ss_pred CCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCC
Confidence 8999999999888842 1234445555655554
No 53
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.55 E-value=5.1e-14 Score=136.25 Aligned_cols=143 Identities=17% Similarity=0.169 Sum_probs=89.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCC
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGR 227 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~ 227 (465)
..-.+|||||||||||+||+.||++++.++..++++.+. .. .-+..++.. -....|||||||..+
T Consensus 49 ~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~-----k~-~dl~~il~~------l~~~~ILFIDEIHRl--- 113 (233)
T PF05496_consen 49 ALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIE-----KA-GDLAAILTN------LKEGDILFIDEIHRL--- 113 (233)
T ss_dssp ---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC-------SC-HHHHHHHHT--------TT-EEEECTCCC----
T ss_pred CcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhh-----hH-HHHHHHHHh------cCCCcEEEEechhhc---
Confidence 345899999999999999999999999999999887543 11 122223222 235679999999653
Q ss_pred CCCCcccchhhHHHHHHHHHhhcCCccccCCCc-cc----cCCCCCceEEEEeCCCCCCChhhhcCCCceEEEe--CCCH
Q 012383 228 MGGTTQYTVNNQMVNATLMNIADNPTCVQLPGM-YN----KEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 300 (465)
Q Consensus 228 r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~-~~----~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~--~P~~ 300 (465)
+..++..|+-.+++-...-+-|. .. .-..++.-+|++|++...|.++|+- ||-.... ..+.
T Consensus 114 ----------nk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~ 181 (233)
T PF05496_consen 114 ----------NKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSE 181 (233)
T ss_dssp -----------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCT--TSSEEEE----TH
T ss_pred ----------cHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHh--hcceecchhcCCH
Confidence 35556777777764221011011 00 0123566899999999999999975 6766544 8999
Q ss_pred HHHHHHHHHhccCCCCC
Q 012383 301 EDRIGVCKGIFRNDNVA 317 (465)
Q Consensus 301 e~R~~Il~~~l~~~~v~ 317 (465)
++...|++......+++
T Consensus 182 ~el~~Iv~r~a~~l~i~ 198 (233)
T PF05496_consen 182 EELAKIVKRSARILNIE 198 (233)
T ss_dssp HHHHHHHHHCCHCTT-E
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 99999998877666554
No 54
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.54 E-value=5.3e-14 Score=157.64 Aligned_cols=139 Identities=14% Similarity=0.170 Sum_probs=105.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHh----------CCceEEecccccc--cCCCCChHHHHHHHHHHHHHHHHhCCceEE
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKKGKMCCL 216 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~el----------g~~~i~vs~s~L~--s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~IL 216 (465)
+..+||+||||||||++|+++|... +..++.++.+.+. .+|.|+.+..++.+|..+ +...++||
T Consensus 207 ~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l----~~~~~~IL 282 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQL----EQDTNSIL 282 (758)
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHH----HhcCCCEE
Confidence 4567999999999999999999874 4556666666666 467899999999999887 66788999
Q ss_pred EecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC-----CCChhhhcCCCc
Q 012383 217 MINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----TLYAPLIRDGRM 291 (465)
Q Consensus 217 fIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~-----~LD~ALlR~GRf 291 (465)
|||||+.+++.+..... ...+.++|..++. ..++.+|++||.++ .+|+||.| ||
T Consensus 283 fIDEIh~L~g~g~~~~g----~~d~~nlLkp~L~---------------~g~i~vIgATt~~E~~~~~~~D~AL~r--RF 341 (758)
T PRK11034 283 FIDEIHTIIGAGAASGG----QVDAANLIKPLLS---------------SGKIRVIGSTTYQEFSNIFEKDRALAR--RF 341 (758)
T ss_pred EeccHHHHhccCCCCCc----HHHHHHHHHHHHh---------------CCCeEEEecCChHHHHHHhhccHHHHh--hC
Confidence 99999999877541111 1122223322222 46789999999865 58999999 99
Q ss_pred eEEEe-CCCHHHHHHHHHHhcc
Q 012383 292 EKFYW-APTREDRIGVCKGIFR 312 (465)
Q Consensus 292 d~~i~-~P~~e~R~~Il~~~l~ 312 (465)
+.+.. .|+.+++..|++.+..
T Consensus 342 q~I~v~ePs~~~~~~IL~~~~~ 363 (758)
T PRK11034 342 QKIDITEPSIEETVQIINGLKP 363 (758)
T ss_pred cEEEeCCCCHHHHHHHHHHHHH
Confidence 86444 9999999999987653
No 55
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.53 E-value=4.4e-14 Score=160.70 Aligned_cols=138 Identities=20% Similarity=0.219 Sum_probs=107.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh----------CCceEEecccccc--cCCCCChHHHHHHHHHHHHHHHHhCCceEEE
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKKGKMCCLM 217 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~el----------g~~~i~vs~s~L~--s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILf 217 (465)
..++|+||||||||++|+.+|..+ +.+++.++.+.+. .+|.|+.++.++.+|.+.. +...++|||
T Consensus 200 ~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~---~~~~~~ILf 276 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLA---KQEGNVILF 276 (857)
T ss_pred CceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhhhhHHHHHHHHHHHH---HcCCCeEEE
Confidence 478899999999999999999997 7788888888876 5688999999999998751 246789999
Q ss_pred ecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC-----CCChhhhcCCCce
Q 012383 218 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----TLYAPLIRDGRME 292 (465)
Q Consensus 218 IDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~-----~LD~ALlR~GRfd 292 (465)
||||+.+.+..+...... ...+| . .. -.++.+.+|+||+..+ .+|+||.| ||+
T Consensus 277 IDEih~l~~~~~~~~~~d-----~~~~l----k--------p~---l~~g~l~~IgaTt~~e~r~~~~~d~al~r--Rf~ 334 (857)
T PRK10865 277 IDELHTMVGAGKADGAMD-----AGNML----K--------PA---LARGELHCVGATTLDEYRQYIEKDAALER--RFQ 334 (857)
T ss_pred EecHHHhccCCCCccchh-----HHHHh----c--------ch---hhcCCCeEEEcCCCHHHHHHhhhcHHHHh--hCC
Confidence 999999987653221111 12222 1 01 2356789999999887 48999999 998
Q ss_pred EEEe-CCCHHHHHHHHHHhcc
Q 012383 293 KFYW-APTREDRIGVCKGIFR 312 (465)
Q Consensus 293 ~~i~-~P~~e~R~~Il~~~l~ 312 (465)
.++. .|+.+++..|++.+..
T Consensus 335 ~i~v~eP~~~~~~~iL~~l~~ 355 (857)
T PRK10865 335 KVFVAEPSVEDTIAILRGLKE 355 (857)
T ss_pred EEEeCCCCHHHHHHHHHHHhh
Confidence 7655 9999999999987764
No 56
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.52 E-value=1.5e-13 Score=140.17 Aligned_cols=154 Identities=15% Similarity=0.133 Sum_probs=100.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccC
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAG 226 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~ 226 (465)
.++..+|||||||||||++|+++|++++..+..++++.+.. ...+..++.. ...++||||||||.+..
T Consensus 49 ~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~------~~~l~~~l~~------l~~~~vl~IDEi~~l~~ 116 (328)
T PRK00080 49 EALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK------PGDLAAILTN------LEEGDVLFIDEIHRLSP 116 (328)
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC------hHHHHHHHHh------cccCCEEEEecHhhcch
Confidence 45678999999999999999999999999888777664321 1223333332 34578999999998743
Q ss_pred CCCCCcccchhhHHHHHHHHHhhcCCc-cccCCCcccc----CCCCCceEEEEeCCCCCCChhhhcCCCceEEEe--CCC
Q 012383 227 RMGGTTQYTVNNQMVNATLMNIADNPT-CVQLPGMYNK----EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 299 (465)
Q Consensus 227 ~r~~~~~~~v~~~~v~~~Ll~llD~~~-~v~l~g~~~~----~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~--~P~ 299 (465)
.. .+.|+.++++.. .+.++..... ...+++.+|++||++..++++|++ ||...+. .|+
T Consensus 117 ~~-------------~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~ 181 (328)
T PRK00080 117 VV-------------EEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYT 181 (328)
T ss_pred HH-------------HHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHH--hcCeeeecCCCC
Confidence 21 122333333110 0111111000 122457899999999999999976 7766555 999
Q ss_pred HHHHHHHHHHhccCCC--CChhHHHHHhcC
Q 012383 300 REDRIGVCKGIFRNDN--VADDDIVKLVDT 327 (465)
Q Consensus 300 ~e~R~~Il~~~l~~~~--v~~~~la~lt~g 327 (465)
.+++.+|++......+ ++.+.+..++..
T Consensus 182 ~~e~~~il~~~~~~~~~~~~~~~~~~ia~~ 211 (328)
T PRK00080 182 VEELEKIVKRSARILGVEIDEEGALEIARR 211 (328)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Confidence 9999999998876654 444444444433
No 57
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.52 E-value=1.2e-13 Score=156.97 Aligned_cols=163 Identities=18% Similarity=0.211 Sum_probs=117.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh----------CCceEEeccccccc--CCCCChHHHHHHHHHHHHHHHH-hCCceEE
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELES--GNAGEPAKLIRQRYREAADIIK-KGKMCCL 216 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~el----------g~~~i~vs~s~L~s--~~~Ge~~k~Ir~~F~~A~~~i~-~~~p~IL 216 (465)
.+++|+||||||||++|+.+|..+ +.+++.++.+.+.. +|.|+.+..++.+|.++ + ...++||
T Consensus 209 ~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~----~~~~~~~IL 284 (852)
T TIGR03345 209 NNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEV----KASPQPIIL 284 (852)
T ss_pred CceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHHHHHHHHHHHHH----HhcCCCeEE
Confidence 478999999999999999999986 24567777777763 68899999999999987 4 3578999
Q ss_pred EecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC-----CCCChhhhcCCCc
Q 012383 217 MINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF-----STLYAPLIRDGRM 291 (465)
Q Consensus 217 fIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~-----~~LD~ALlR~GRf 291 (465)
|||||+.+.+.++...+... ..+|... -.++.+.+|+||+.. -.+|+||.| ||
T Consensus 285 fIDEih~l~~~g~~~~~~d~-----~n~Lkp~---------------l~~G~l~~IgaTT~~e~~~~~~~d~AL~r--Rf 342 (852)
T TIGR03345 285 FIDEAHTLIGAGGQAGQGDA-----ANLLKPA---------------LARGELRTIAATTWAEYKKYFEKDPALTR--RF 342 (852)
T ss_pred EEeChHHhccCCCccccccH-----HHHhhHH---------------hhCCCeEEEEecCHHHHhhhhhccHHHHH--hC
Confidence 99999999887642222111 1122111 234678999999864 358999999 88
Q ss_pred eEEEe-CCCHHHHHHHHHHhccC----CC--CChh---HHHHHhcCC------CchhhHHHHH
Q 012383 292 EKFYW-APTREDRIGVCKGIFRN----DN--VADD---DIVKLVDTF------PGQSIDFFGA 338 (465)
Q Consensus 292 d~~i~-~P~~e~R~~Il~~~l~~----~~--v~~~---~la~lt~gf------sgadld~~~a 338 (465)
..+.. .|+.+++..|++.+... .+ ++.+ .++.++++| ++..||.+-.
T Consensus 343 ~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDKAIdllde 405 (852)
T TIGR03345 343 QVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDKAVSLLDT 405 (852)
T ss_pred eEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccHHHHHHHH
Confidence 76544 99999999997665532 22 3444 566777665 5556765543
No 58
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.50 E-value=2.5e-13 Score=154.23 Aligned_cols=169 Identities=18% Similarity=0.208 Sum_probs=122.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHh----------CCceEEecccccc--cCCCCChHHHHHHHHHHHHHHHHhCCce
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKKGKMC 214 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~el----------g~~~i~vs~s~L~--s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ 214 (465)
+.+.+++|+||||||||++|+.+|..+ +.+++.++.+.+. .+|.|+.+..++.+|+++ +...++
T Consensus 198 ~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~----~~~~~~ 273 (821)
T CHL00095 198 RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEI----QENNNI 273 (821)
T ss_pred cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHH----HhcCCe
Confidence 456689999999999999999999986 4678889988886 578899999999999988 667899
Q ss_pred EEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC-----CCChhhhcCC
Q 012383 215 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----TLYAPLIRDG 289 (465)
Q Consensus 215 ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~-----~LD~ALlR~G 289 (465)
|||||||+.+.+..+..... -+...|...+ .++.+.+|++|+..+ ..|++|.|
T Consensus 274 ILfiDEih~l~~~g~~~g~~-----~~a~lLkp~l---------------~rg~l~~IgaTt~~ey~~~ie~D~aL~r-- 331 (821)
T CHL00095 274 ILVIDEVHTLIGAGAAEGAI-----DAANILKPAL---------------ARGELQCIGATTLDEYRKHIEKDPALER-- 331 (821)
T ss_pred EEEEecHHHHhcCCCCCCcc-----cHHHHhHHHH---------------hCCCcEEEEeCCHHHHHHHHhcCHHHHh--
Confidence 99999999998765311111 1222221111 246689999998764 58999998
Q ss_pred CceEEEe-CCCHHHHHHHHHHhcc------CCCCChh---HHHHHhcCCC------chhhHHHHHHHh
Q 012383 290 RMEKFYW-APTREDRIGVCKGIFR------NDNVADD---DIVKLVDTFP------GQSIDFFGALRA 341 (465)
Q Consensus 290 Rfd~~i~-~P~~e~R~~Il~~~l~------~~~v~~~---~la~lt~gfs------gadld~~~alra 341 (465)
||..+.. .|+.++...|++.+.. ...++.+ .++.++.+|- +..|+++....+
T Consensus 332 Rf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPdkaidlld~a~a 399 (821)
T CHL00095 332 RFQPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKAIDLLDEAGS 399 (821)
T ss_pred cceEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCchHHHHHHHHHHH
Confidence 8887544 8999999899765432 1235554 5567777754 446666544443
No 59
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.50 E-value=1.7e-13 Score=155.99 Aligned_cols=167 Identities=20% Similarity=0.220 Sum_probs=119.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHh----------CCceEEecccccc--cCCCCChHHHHHHHHHHHHHHHHh-CCceE
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKK-GKMCC 215 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~el----------g~~~i~vs~s~L~--s~~~Ge~~k~Ir~~F~~A~~~i~~-~~p~I 215 (465)
...++|+||||||||++++.+|..+ +.+++.++.+.+. .+|.|+.++.++.+|.++ .. ..++|
T Consensus 194 ~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~----~~~~~~~I 269 (852)
T TIGR03346 194 KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEV----TKSEGQII 269 (852)
T ss_pred CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHH----HhcCCCeE
Confidence 4577899999999999999999985 6778888877775 568899999999999887 43 46899
Q ss_pred EEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC-----CCChhhhcCCC
Q 012383 216 LMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----TLYAPLIRDGR 290 (465)
Q Consensus 216 LfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~-----~LD~ALlR~GR 290 (465)
||||||+.+.+.++.... .-...+|.. . .....+.+|++||..+ .+|+||.| |
T Consensus 270 LfIDEih~l~~~g~~~~~-----~d~~~~Lk~------------~---l~~g~i~~IgaTt~~e~r~~~~~d~al~r--R 327 (852)
T TIGR03346 270 LFIDELHTLVGAGKAEGA-----MDAGNMLKP------------A---LARGELHCIGATTLDEYRKYIEKDAALER--R 327 (852)
T ss_pred EEeccHHHhhcCCCCcch-----hHHHHHhch------------h---hhcCceEEEEeCcHHHHHHHhhcCHHHHh--c
Confidence 999999999875431111 111222211 1 2346789999999774 58999999 8
Q ss_pred ceEEEe-CCCHHHHHHHHHHhccCC----C--CChh---HHHHHhcCC------CchhhHHHHHHHh
Q 012383 291 MEKFYW-APTREDRIGVCKGIFRND----N--VADD---DIVKLVDTF------PGQSIDFFGALRA 341 (465)
Q Consensus 291 fd~~i~-~P~~e~R~~Il~~~l~~~----~--v~~~---~la~lt~gf------sgadld~~~alra 341 (465)
|..++. .|+.+++..|++.+.... + +..+ ..+.++.+| +...|+.+...++
T Consensus 328 f~~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdkAidlld~a~a 394 (852)
T TIGR03346 328 FQPVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKAIDLIDEAAA 394 (852)
T ss_pred CCEEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCchHHHHHHHHHHH
Confidence 987555 999999999988764331 2 3333 456677766 4445665543333
No 60
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.49 E-value=3.6e-13 Score=135.13 Aligned_cols=153 Identities=14% Similarity=0.142 Sum_probs=96.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccC
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAG 226 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~ 226 (465)
..+..++||||||||||++|+++|++++..+..+.++.+.. . ..+...+. ....+.||||||++.+..
T Consensus 28 ~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~-----~-~~l~~~l~------~~~~~~vl~iDEi~~l~~ 95 (305)
T TIGR00635 28 EALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK-----P-GDLAAILT------NLEEGDVLFIDEIHRLSP 95 (305)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC-----c-hhHHHHHH------hcccCCEEEEehHhhhCH
Confidence 34668999999999999999999999998877666543321 1 11222222 134578999999998753
Q ss_pred CCCCCcccchhhHHHHHHHHHhhcCCc-cccCCCcccc----CCCCCceEEEEeCCCCCCChhhhcCCCceEEEe--CCC
Q 012383 227 RMGGTTQYTVNNQMVNATLMNIADNPT-CVQLPGMYNK----EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 299 (465)
Q Consensus 227 ~r~~~~~~~v~~~~v~~~Ll~llD~~~-~v~l~g~~~~----~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~--~P~ 299 (465)
.. ...|.+++++-. .+.++..... ...+.+.+|++||++..++++++. ||...+. .|+
T Consensus 96 ~~-------------~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~s--R~~~~~~l~~l~ 160 (305)
T TIGR00635 96 AV-------------EELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRD--RFGIILRLEFYT 160 (305)
T ss_pred HH-------------HHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHh--hcceEEEeCCCC
Confidence 21 122333433111 0111110000 123457899999999999999886 7766554 899
Q ss_pred HHHHHHHHHHhccCC--CCChhHHHHHhc
Q 012383 300 REDRIGVCKGIFRND--NVADDDIVKLVD 326 (465)
Q Consensus 300 ~e~R~~Il~~~l~~~--~v~~~~la~lt~ 326 (465)
.+++.+|++...... .++.+.+..++.
T Consensus 161 ~~e~~~il~~~~~~~~~~~~~~al~~ia~ 189 (305)
T TIGR00635 161 VEELAEIVSRSAGLLNVEIEPEAALEIAR 189 (305)
T ss_pred HHHHHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 999999998877644 444554433333
No 61
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.48 E-value=3.1e-13 Score=142.25 Aligned_cols=103 Identities=17% Similarity=0.255 Sum_probs=77.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccc-cCCCCChH-HHHHHHHHHHHHHHHhCCceEEEecccccccC
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE-SGNAGEPA-KLIRQRYREAADIIKKGKMCCLMINDLDAGAG 226 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~-s~~~Ge~~-k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~ 226 (465)
...+||+||||||||++|+++|+.++.+|+.++++.+. ..|+|+.. ..+..++..+...+....++||||||||++..
T Consensus 108 ~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~ 187 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIAR 187 (412)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhcc
Confidence 47899999999999999999999999999999998875 57999854 34455555442233456789999999999987
Q ss_pred CCCCC-cccchhhHHHHHHHHHhhcC
Q 012383 227 RMGGT-TQYTVNNQMVNATLMNIADN 251 (465)
Q Consensus 227 ~r~~~-~~~~v~~~~v~~~Ll~llD~ 251 (465)
++.+. ....+...-+++.|+++|+.
T Consensus 188 ~~~~~~~~~d~s~~~vQ~~LL~~Leg 213 (412)
T PRK05342 188 KSENPSITRDVSGEGVQQALLKILEG 213 (412)
T ss_pred ccCCCCcCCCcccHHHHHHHHHHHhc
Confidence 64311 12234445678889999983
No 62
>PRK04195 replication factor C large subunit; Provisional
Probab=99.47 E-value=8.6e-13 Score=141.49 Aligned_cols=152 Identities=19% Similarity=0.238 Sum_probs=103.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCChHHHHHHHHHHHHHHHH-h-CCceEEEecccccc
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-K-GKMCCLMINDLDAG 224 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~-~-~~p~ILfIDEIDai 224 (465)
.+++.+|||||||||||++|+++|++++.+++.+++++.. ....++.+...+..... . ..+.||||||+|.+
T Consensus 37 ~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r------~~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L 110 (482)
T PRK04195 37 KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQR------TADVIERVAGEAATSGSLFGARRKLILLDEVDGI 110 (482)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccc------cHHHHHHHHHHhhccCcccCCCCeEEEEecCccc
Confidence 4478999999999999999999999999999999987643 22345555444422111 1 26789999999988
Q ss_pred cCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCCh-hhhcCCCceEEEe-CCCHHH
Q 012383 225 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYA-PLIRDGRMEKFYW-APTRED 302 (465)
Q Consensus 225 ~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~-ALlR~GRfd~~i~-~P~~e~ 302 (465)
.+... +-....|+++++ ..+.++|++||++..+++ .|.+ |+..+.. .|+..+
T Consensus 111 ~~~~d---------~~~~~aL~~~l~---------------~~~~~iIli~n~~~~~~~k~Lrs--r~~~I~f~~~~~~~ 164 (482)
T PRK04195 111 HGNED---------RGGARAILELIK---------------KAKQPIILTANDPYDPSLRELRN--ACLMIEFKRLSTRS 164 (482)
T ss_pred ccccc---------hhHHHHHHHHHH---------------cCCCCEEEeccCccccchhhHhc--cceEEEecCCCHHH
Confidence 65321 001122333433 234689999999999888 5554 4444333 899999
Q ss_pred HHHHHHHhccCCC--CChhHHHHHhcCCCc
Q 012383 303 RIGVCKGIFRNDN--VADDDIVKLVDTFPG 330 (465)
Q Consensus 303 R~~Il~~~l~~~~--v~~~~la~lt~gfsg 330 (465)
...+++.++...+ ++.+.+..++....|
T Consensus 165 i~~~L~~i~~~egi~i~~eaL~~Ia~~s~G 194 (482)
T PRK04195 165 IVPVLKRICRKEGIECDDEALKEIAERSGG 194 (482)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 9999998886654 455566666655433
No 63
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.47 E-value=2.7e-13 Score=144.08 Aligned_cols=194 Identities=18% Similarity=0.239 Sum_probs=118.9
Q ss_pred ccccccccccCCCCCchhHHHHHHHHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHh-----CCceEEecccc
Q 012383 110 LRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGE 184 (465)
Q Consensus 110 ~r~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~el-----g~~~i~vs~s~ 184 (465)
...|+|++.+.+. ..+.....++.+...++. ....++||||||||||+|++++++++ +..++++++.+
T Consensus 116 ~~~~tfd~fv~g~------~n~~a~~~~~~~~~~~~~-~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~ 188 (450)
T PRK00149 116 NPKYTFDNFVVGK------SNRLAHAAALAVAENPGK-AYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEK 188 (450)
T ss_pred CCCCcccccccCC------CcHHHHHHHHHHHhCcCc-cCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHH
Confidence 3567888865441 123355666666665542 33579999999999999999999997 56688888887
Q ss_pred cccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccC
Q 012383 185 LESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE 264 (465)
Q Consensus 185 L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~ 264 (465)
+.+.+...-.......|... ...+.+|+|||||.+.++.. .++.|+.+++ .. .
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~-----~~~~dlLiiDDi~~l~~~~~-----------~~~~l~~~~n--------~l---~ 241 (450)
T PRK00149 189 FTNDFVNALRNNTMEEFKEK-----YRSVDVLLIDDIQFLAGKER-----------TQEEFFHTFN--------AL---H 241 (450)
T ss_pred HHHHHHHHHHcCcHHHHHHH-----HhcCCEEEEehhhhhcCCHH-----------HHHHHHHHHH--------HH---H
Confidence 76443221111011122211 22578999999998865531 1122333333 11 1
Q ss_pred CCCCceEEEEeCCC-CC---CChhhhcCCCce--EEEe--CCCHHHHHHHHHHhccCC--CCChhHHHHHhcCCCchhhH
Q 012383 265 ENPRVPIIVTGNDF-ST---LYAPLIRDGRME--KFYW--APTREDRIGVCKGIFRND--NVADDDIVKLVDTFPGQSID 334 (465)
Q Consensus 265 ~~~~V~VI~TTN~~-~~---LD~ALlR~GRfd--~~i~--~P~~e~R~~Il~~~l~~~--~v~~~~la~lt~gfsgadld 334 (465)
.. +..+|+|+|.+ .. +++.|.. ||. ..+. .|+.++|.+|++..+... .++.+.+.-++..+.+.--+
T Consensus 242 ~~-~~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~R~ 318 (450)
T PRK00149 242 EA-GKQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVRE 318 (450)
T ss_pred HC-CCcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCCCHHH
Confidence 11 22466666654 33 6677775 774 3344 999999999999988754 46677777777777764333
Q ss_pred HHHHHH
Q 012383 335 FFGALR 340 (465)
Q Consensus 335 ~~~alr 340 (465)
..++|.
T Consensus 319 l~~~l~ 324 (450)
T PRK00149 319 LEGALN 324 (450)
T ss_pred HHHHHH
Confidence 334433
No 64
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.46 E-value=3.3e-13 Score=141.38 Aligned_cols=184 Identities=17% Similarity=0.239 Sum_probs=112.1
Q ss_pred cccccccccCCCCCchhHHHHHHHHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHh-----CCceEEeccccc
Q 012383 111 RTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGEL 185 (465)
Q Consensus 111 r~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~el-----g~~~i~vs~s~L 185 (465)
..|+|++...+. ........++.+...++ .....++||||||||||+|++++++++ +..++++++.++
T Consensus 105 ~~~tfd~fi~g~------~n~~a~~~~~~~~~~~~-~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~ 177 (405)
T TIGR00362 105 PKYTFDNFVVGK------SNRLAHAAALAVAENPG-KAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKF 177 (405)
T ss_pred CCCcccccccCC------cHHHHHHHHHHHHhCcC-ccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHH
Confidence 457788854331 12335566666666554 234579999999999999999999986 677888888776
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCC
Q 012383 186 ESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 265 (465)
Q Consensus 186 ~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~ 265 (465)
...+...-.......|... -..+.+|+|||||.+.++.. .+..|+.+++ .. ..
T Consensus 178 ~~~~~~~~~~~~~~~~~~~-----~~~~dlLiiDDi~~l~~~~~-----------~~~~l~~~~n--------~~---~~ 230 (405)
T TIGR00362 178 TNDFVNALRNNKMEEFKEK-----YRSVDLLLIDDIQFLAGKER-----------TQEEFFHTFN--------AL---HE 230 (405)
T ss_pred HHHHHHHHHcCCHHHHHHH-----HHhCCEEEEehhhhhcCCHH-----------HHHHHHHHHH--------HH---HH
Confidence 5433211000000112211 12367999999998865431 1123344444 11 01
Q ss_pred CCCceEEEEeCC-CC---CCChhhhcCCCceE--EEe--CCCHHHHHHHHHHhccCC--CCChhHHHHHhcCCCch
Q 012383 266 NPRVPIIVTGND-FS---TLYAPLIRDGRMEK--FYW--APTREDRIGVCKGIFRND--NVADDDIVKLVDTFPGQ 331 (465)
Q Consensus 266 ~~~V~VI~TTN~-~~---~LD~ALlR~GRfd~--~i~--~P~~e~R~~Il~~~l~~~--~v~~~~la~lt~gfsga 331 (465)
.+..+|+|+|. |. .+++.|.. ||.. .+. .|+.++|.+|++..+... .++.+.+.-++..+.+.
T Consensus 231 -~~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~ 303 (405)
T TIGR00362 231 -NGKQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRSN 303 (405)
T ss_pred -CCCCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC
Confidence 12345666664 43 35677765 6653 344 999999999999988655 45566666666666653
No 65
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.46 E-value=3.5e-13 Score=140.91 Aligned_cols=155 Identities=19% Similarity=0.217 Sum_probs=120.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccc-cCCCC-ChHHHHHHHHHHHHHHH----------------
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE-SGNAG-EPAKLIRQRYREAADII---------------- 208 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~-s~~~G-e~~k~Ir~~F~~A~~~i---------------- 208 (465)
-+|++|||+||||||||++|+++|+.++.+|+.+++..+. .+|+| +.+..++.+|..|...+
T Consensus 45 ~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~dvE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~a 124 (441)
T TIGR00390 45 VTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESMVRDLTDAAVKLVKEEAIEKVRDRAEELA 124 (441)
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3579999999999999999999999999999999999886 48999 67888999988871100
Q ss_pred --------------------------------------------------------------------------------
Q 012383 209 -------------------------------------------------------------------------------- 208 (465)
Q Consensus 209 -------------------------------------------------------------------------------- 208 (465)
T Consensus 125 e~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (441)
T TIGR00390 125 EERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEIDVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNL 204 (441)
T ss_pred HHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEEeecCCCCCccccCCCcchhHHHhhHHHHHHhh
Confidence
Q ss_pred ---------------------------------------HhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhh
Q 012383 209 ---------------------------------------KKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIA 249 (465)
Q Consensus 209 ---------------------------------------~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~ll 249 (465)
+..+..||||||||+|+.+.. +....+...-|++-|+.++
T Consensus 205 ~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVfiDEiDKIa~~~~-~~~~DvS~eGVQ~~LLkil 283 (441)
T TIGR00390 205 GGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIFIDEIDKIAKKGE-SSGADVSREGVQRDLLPIV 283 (441)
T ss_pred cCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEEEchhhhcccCC-CCCCCCCccchhccccccc
Confidence 012456999999999997653 2345566777899999998
Q ss_pred cCCccccCCCccccCCCCCceEEEEeC----CCCCCChhhhcCCCceEEEe--CCCHHHHHHHH
Q 012383 250 DNPTCVQLPGMYNKEENPRVPIIVTGN----DFSTLYAPLIRDGRMEKFYW--APTREDRIGVC 307 (465)
Q Consensus 250 D~~~~v~l~g~~~~~~~~~V~VI~TTN----~~~~LD~ALlR~GRfd~~i~--~P~~e~R~~Il 307 (465)
...+... -++.....+|.+|++.- .|+.|-|.|. |||-.... .++.++-..||
T Consensus 284 EGt~v~~---k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v~L~~L~~edL~rIL 342 (441)
T TIGR00390 284 EGSTVNT---KYGMVKTDHILFIAAGAFQLAKPSDLIPELQ--GRFPIRVELQALTTDDFERIL 342 (441)
T ss_pred cCceeee---cceeEECCceeEEecCCcCCCChhhccHHHh--CccceEEECCCCCHHHHHHHh
Confidence 8533221 12335567888888763 5777888887 89999888 88999998886
No 66
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.45 E-value=6.5e-13 Score=139.57 Aligned_cols=128 Identities=18% Similarity=0.221 Sum_probs=86.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccc-cCCCCCh-HHHHHHHHHHHHHHHHhCCceEEEecccccccC
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE-SGNAGEP-AKLIRQRYREAADIIKKGKMCCLMINDLDAGAG 226 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~-s~~~Ge~-~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~ 226 (465)
+..+||+||||||||++|+++|+.++.+|..++++.+. .+|+|+. +..+...++.+...+....++||||||||++..
T Consensus 116 ~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~ 195 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISR 195 (413)
T ss_pred CceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhch
Confidence 36899999999999999999999999999999988875 4688985 444555554432223456788999999999987
Q ss_pred CCCCC-cccchhhHHHHHHHHHhhcCCccccCCC-ccccCCCCCceEEEEeCC
Q 012383 227 RMGGT-TQYTVNNQMVNATLMNIADNPTCVQLPG-MYNKEENPRVPIIVTGND 277 (465)
Q Consensus 227 ~r~~~-~~~~v~~~~v~~~Ll~llD~~~~v~l~g-~~~~~~~~~V~VI~TTN~ 277 (465)
++... ....+....+++.|+++++. +.+.++. .-......+.++|.|+|-
T Consensus 196 ~~~~~s~~~dvsg~~vq~~LL~iLeG-~~~~v~~~~gr~~~~~~~i~i~TsNi 247 (413)
T TIGR00382 196 KSENPSITRDVSGEGVQQALLKIIEG-TVANVPPQGGRKHPYQEFIQIDTSNI 247 (413)
T ss_pred hhccccccccccchhHHHHHHHHhhc-cceecccCCCccccCCCeEEEEcCCc
Confidence 64311 12233344677888889873 2211111 101122345677888776
No 67
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.43 E-value=3.6e-12 Score=133.53 Aligned_cols=156 Identities=15% Similarity=0.132 Sum_probs=103.3
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCce-----------------------EEecccccccCCCCChHHHHHHHH
Q 012383 145 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINP-----------------------IMMSAGELESGNAGEPAKLIRQRY 201 (465)
Q Consensus 145 ~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~-----------------------i~vs~s~L~s~~~Ge~~k~Ir~~F 201 (465)
+.+.|.++|||||||+|||++|+++|+.+.+.. ..+... ... -....||+++
T Consensus 32 ~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hpD~~~i~~~---~~~--i~i~~iR~l~ 106 (394)
T PRK07940 32 GSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHPDVRVVAPE---GLS--IGVDEVRELV 106 (394)
T ss_pred CCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeccc---ccc--CCHHHHHHHH
Confidence 455789999999999999999999999875531 111111 011 1234578888
Q ss_pred HHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCC
Q 012383 202 REAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTL 281 (465)
Q Consensus 202 ~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~L 281 (465)
+.+...-..+...|+||||+|.+... ....|+..++ +...++++|.+|++++.|
T Consensus 107 ~~~~~~p~~~~~kViiIDead~m~~~-------------aanaLLk~LE-------------ep~~~~~fIL~a~~~~~l 160 (394)
T PRK07940 107 TIAARRPSTGRWRIVVIEDADRLTER-------------AANALLKAVE-------------EPPPRTVWLLCAPSPEDV 160 (394)
T ss_pred HHHHhCcccCCcEEEEEechhhcCHH-------------HHHHHHHHhh-------------cCCCCCeEEEEECChHHC
Confidence 77622111455679999999987321 1234555555 344566777777779999
Q ss_pred ChhhhcCCCceEEEe-CCCHHHHHHHHHHhccCCCCChh---HHHHHhcCCCchhhHHH
Q 012383 282 YAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVADD---DIVKLVDTFPGQSIDFF 336 (465)
Q Consensus 282 D~ALlR~GRfd~~i~-~P~~e~R~~Il~~~l~~~~v~~~---~la~lt~gfsgadld~~ 336 (465)
.|++++ |+-.+.. .|+.++..+++.... +++.+ .++.++.|.++..+.+.
T Consensus 161 lpTIrS--Rc~~i~f~~~~~~~i~~~L~~~~---~~~~~~a~~la~~s~G~~~~A~~l~ 214 (394)
T PRK07940 161 LPTIRS--RCRHVALRTPSVEAVAEVLVRRD---GVDPETARRAARASQGHIGRARRLA 214 (394)
T ss_pred hHHHHh--hCeEEECCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHcCCCHHHHHHHh
Confidence 999987 6654444 888888877775322 35544 56778888888776653
No 68
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.42 E-value=1.4e-12 Score=142.15 Aligned_cols=185 Identities=15% Similarity=0.148 Sum_probs=114.9
Q ss_pred cccccccccCCCCCchhHHHHHHHHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHh-----CCceEEeccccc
Q 012383 111 RTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGEL 185 (465)
Q Consensus 111 r~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~el-----g~~~i~vs~s~L 185 (465)
..|+|+|.+.+.. . +.....++.+...++. ....|+|||++|||||+|+++|++++ +..+++++..++
T Consensus 283 ~~~TFDnFvvG~s--N----~~A~aaa~avae~~~~-~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef 355 (617)
T PRK14086 283 PKYTFDTFVIGAS--N----RFAHAAAVAVAEAPAK-AYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEF 355 (617)
T ss_pred CCCCHhhhcCCCc--c----HHHHHHHHHHHhCccc-cCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH
Confidence 4578888765422 1 2223344444433322 12349999999999999999999986 567889998887
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCC
Q 012383 186 ESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 265 (465)
Q Consensus 186 ~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~ 265 (465)
.+.+...-.......|.+. -..+.+|+||||+.+.++.. . +..|+++++ .. .
T Consensus 356 ~~el~~al~~~~~~~f~~~-----y~~~DLLlIDDIq~l~gke~--t---------qeeLF~l~N--------~l----~ 407 (617)
T PRK14086 356 TNEFINSIRDGKGDSFRRR-----YREMDILLVDDIQFLEDKES--T---------QEEFFHTFN--------TL----H 407 (617)
T ss_pred HHHHHHHHHhccHHHHHHH-----hhcCCEEEEehhccccCCHH--H---------HHHHHHHHH--------HH----H
Confidence 7554322111111223321 33568999999998876532 1 123334444 11 1
Q ss_pred CCCceEEEEeCCC----CCCChhhhcCCCceEEEe--CCCHHHHHHHHHHhccCCCC--ChhHHHHHhcCCCc
Q 012383 266 NPRVPIIVTGNDF----STLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNV--ADDDIVKLVDTFPG 330 (465)
Q Consensus 266 ~~~V~VI~TTN~~----~~LD~ALlR~GRfd~~i~--~P~~e~R~~Il~~~l~~~~v--~~~~la~lt~gfsg 330 (465)
..+..||+|+|.+ ..+++.|..+...-..+. .|+.+.|.+||+..+...++ +.+.+.-++..++.
T Consensus 408 e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~r 480 (617)
T PRK14086 408 NANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISR 480 (617)
T ss_pred hcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccC
Confidence 1234677888875 357888887333344445 89999999999998876654 45556666666665
No 69
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.42 E-value=2e-12 Score=133.25 Aligned_cols=150 Identities=19% Similarity=0.179 Sum_probs=103.2
Q ss_pred ccccccCCCCCchhHHHHHHHHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCCh
Q 012383 114 NLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEP 193 (465)
Q Consensus 114 ~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge~ 193 (465)
+|+.++|..|+--. -.+.++.+.... .-.++||||||||||++|+.||+.++.+|..+|+.. .+
T Consensus 22 ~lde~vGQ~HLlg~------~~~lrr~v~~~~---l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~-------~g 85 (436)
T COG2256 22 SLDEVVGQEHLLGE------GKPLRRAVEAGH---LHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT-------SG 85 (436)
T ss_pred CHHHhcChHhhhCC------CchHHHHHhcCC---CceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc-------cc
Confidence 44666665443211 113344444333 347899999999999999999999999999998752 23
Q ss_pred HHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEE
Q 012383 194 AKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 273 (465)
Q Consensus 194 ~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~ 273 (465)
.+-+|.++++|......++..|||||||..+-.. | +.+|+-. .+...|.+|+
T Consensus 86 vkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~-----Q--------QD~lLp~---------------vE~G~iilIG 137 (436)
T COG2256 86 VKDLREIIEEARKNRLLGRRTILFLDEIHRFNKA-----Q--------QDALLPH---------------VENGTIILIG 137 (436)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEehhhhcChh-----h--------hhhhhhh---------------hcCCeEEEEe
Confidence 5779999999966655677899999999654322 1 2333222 2345677777
Q ss_pred Ee--CCCCCCChhhhcCCCceEEEe-CCCHHHHHHHHHH
Q 012383 274 TG--NDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKG 309 (465)
Q Consensus 274 TT--N~~~~LD~ALlR~GRfd~~i~-~P~~e~R~~Il~~ 309 (465)
+| |-.-.|.+||+. |.-.+.. ..+.++...+++.
T Consensus 138 ATTENPsF~ln~ALlS--R~~vf~lk~L~~~di~~~l~r 174 (436)
T COG2256 138 ATTENPSFELNPALLS--RARVFELKPLSSEDIKKLLKR 174 (436)
T ss_pred ccCCCCCeeecHHHhh--hhheeeeecCCHHHHHHHHHH
Confidence 55 445589999997 5444444 7788888888777
No 70
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.42 E-value=7.8e-13 Score=138.43 Aligned_cols=153 Identities=22% Similarity=0.267 Sum_probs=119.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHhCCceEEeccccccc-CCCC-ChHHHHHHHHHHHHH--------------------
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES-GNAG-EPAKLIRQRYREAAD-------------------- 206 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s-~~~G-e~~k~Ir~~F~~A~~-------------------- 206 (465)
|.++||+||||||||++|+++|+.++.+|+.++++++.. +|+| +.+..++.+|..|..
T Consensus 50 ~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ 129 (443)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLVEIAVKMVREEKREKVREKAEEAAEE 129 (443)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999998875 7999 567888999888810
Q ss_pred -----H--------------------------------------------------------------------------
Q 012383 207 -----I-------------------------------------------------------------------------- 207 (465)
Q Consensus 207 -----~-------------------------------------------------------------------------- 207 (465)
+
T Consensus 130 ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (443)
T PRK05201 130 RILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEIEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPK 209 (443)
T ss_pred HHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEEEecCCCCcccCCCCcchhHHHHHHHHHHHhhCCC
Confidence 0
Q ss_pred ----------------------------------HH-hCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCC
Q 012383 208 ----------------------------------IK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNP 252 (465)
Q Consensus 208 ----------------------------------i~-~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~ 252 (465)
+. .....||||||||+|+.+.++ ....+...-|++-|+.+++..
T Consensus 210 ~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfiDEiDKIa~~~~~-~~~DvS~eGVQ~~LLki~EG~ 288 (443)
T PRK05201 210 KKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFIDEIDKIAARGGS-SGPDVSREGVQRDLLPLVEGS 288 (443)
T ss_pred CCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEEEcchhhcccCCC-CCCCCCccchhcccccccccc
Confidence 01 124569999999999987542 344666777899999998853
Q ss_pred ccccCCCccccCCCCCceEEEEe----CCCCCCChhhhcCCCceEEEe--CCCHHHHHHHH
Q 012383 253 TCVQLPGMYNKEENPRVPIIVTG----NDFSTLYAPLIRDGRMEKFYW--APTREDRIGVC 307 (465)
Q Consensus 253 ~~v~l~g~~~~~~~~~V~VI~TT----N~~~~LD~ALlR~GRfd~~i~--~P~~e~R~~Il 307 (465)
+... -++.....+|.+|++. ..|+.|-|.|+ |||-..+. .++.++...||
T Consensus 289 ~v~~---k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v~L~~L~~~dL~~IL 344 (443)
T PRK05201 289 TVST---KYGMVKTDHILFIASGAFHVSKPSDLIPELQ--GRFPIRVELDALTEEDFVRIL 344 (443)
T ss_pred eeee---cceeEECCceeEEecCCcCCCChhhccHHHh--CccceEEECCCCCHHHHHHHh
Confidence 3211 1233556788888876 35777888887 79999888 88999998886
No 71
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.42 E-value=5.2e-12 Score=127.33 Aligned_cols=130 Identities=18% Similarity=0.322 Sum_probs=90.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCChHHHHHHHHHHHHHHHH-hCCceEEEeccccccc
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGA 225 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~-~~~p~ILfIDEIDai~ 225 (465)
+.|..+|||||||+|||++|++++++++.+++.+++++ . . ...++........... ...+.||||||+|.+.
T Consensus 41 ~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~-~-----~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~ 113 (316)
T PHA02544 41 RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD-C-----R-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLG 113 (316)
T ss_pred CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc-c-----c-HHHHHHHHHHHHHhhcccCCCeEEEEECccccc
Confidence 45778888999999999999999999999998888875 1 1 2233332222211111 2467899999998762
Q ss_pred CCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhhcCCCceEEEe-CCCHHHHH
Q 012383 226 GRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRI 304 (465)
Q Consensus 226 ~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~-~P~~e~R~ 304 (465)
.. ..+..|..+++ ....++.+|+|||.++.+++++++ ||..+.. .|+.+++.
T Consensus 114 ~~------------~~~~~L~~~le-------------~~~~~~~~Ilt~n~~~~l~~~l~s--R~~~i~~~~p~~~~~~ 166 (316)
T PHA02544 114 LA------------DAQRHLRSFME-------------AYSKNCSFIITANNKNGIIEPLRS--RCRVIDFGVPTKEEQI 166 (316)
T ss_pred CH------------HHHHHHHHHHH-------------hcCCCceEEEEcCChhhchHHHHh--hceEEEeCCCCHHHHH
Confidence 11 11233444444 223567899999999999999987 7766555 99999998
Q ss_pred HHHHHh
Q 012383 305 GVCKGI 310 (465)
Q Consensus 305 ~Il~~~ 310 (465)
+|++.+
T Consensus 167 ~il~~~ 172 (316)
T PHA02544 167 EMMKQM 172 (316)
T ss_pred HHHHHH
Confidence 776543
No 72
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.42 E-value=4.9e-12 Score=134.48 Aligned_cols=194 Identities=14% Similarity=0.154 Sum_probs=116.2
Q ss_pred cccccccccCCCCCchhHHHHHHHHHHHhhhhCCC---CCCCeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEecccc
Q 012383 111 RTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPN---IKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGE 184 (465)
Q Consensus 111 r~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~---~~~p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~s~ 184 (465)
..|+|+|.+.+. . .+.....++.+...++ ......++||||||+|||+|++++++++ +..+++++...
T Consensus 106 ~~~tFdnFv~g~--~----N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~ 179 (445)
T PRK12422 106 PLMTFANFLVTP--E----NDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSEL 179 (445)
T ss_pred ccccccceeeCC--c----HHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHH
Confidence 457888876541 1 2233445555544221 1234679999999999999999999985 67888888876
Q ss_pred cccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccC
Q 012383 185 LESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE 264 (465)
Q Consensus 185 L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~ 264 (465)
+...+...-...-...|+.. .....+|+||||+.+.++.. ++ + .|+.+++ ...
T Consensus 180 f~~~~~~~l~~~~~~~f~~~-----~~~~dvLiIDDiq~l~~k~~--~q-----e----elf~l~N--------~l~--- 232 (445)
T PRK12422 180 FTEHLVSAIRSGEMQRFRQF-----YRNVDALFIEDIEVFSGKGA--TQ-----E----EFFHTFN--------SLH--- 232 (445)
T ss_pred HHHHHHHHHhcchHHHHHHH-----cccCCEEEEcchhhhcCChh--hH-----H----HHHHHHH--------HHH---
Confidence 64322110000000123321 34578999999998765421 11 2 2223322 110
Q ss_pred CCCCceEEEEeCCC----CCCChhhhcCCCce--EEEe--CCCHHHHHHHHHHhccCCC--CChhHHHHHhcCCCchhhH
Q 012383 265 ENPRVPIIVTGNDF----STLYAPLIRDGRME--KFYW--APTREDRIGVCKGIFRNDN--VADDDIVKLVDTFPGQSID 334 (465)
Q Consensus 265 ~~~~V~VI~TTN~~----~~LD~ALlR~GRfd--~~i~--~P~~e~R~~Il~~~l~~~~--v~~~~la~lt~gfsgadld 334 (465)
..+..+|+|||.+ ..+++.|.+ ||. ..+. .|+.++|.+|++......+ ++.+.+.-++..+++.-=+
T Consensus 233 -~~~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~dir~ 309 (445)
T PRK12422 233 -TEGKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSSNVKS 309 (445)
T ss_pred -HCCCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHH
Confidence 1224677788764 356788886 664 4555 8999999999998887654 5566666677777753323
Q ss_pred HHHHHH
Q 012383 335 FFGALR 340 (465)
Q Consensus 335 ~~~alr 340 (465)
..++|.
T Consensus 310 L~g~l~ 315 (445)
T PRK12422 310 LLHALT 315 (445)
T ss_pred HHHHHH
Confidence 334443
No 73
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.41 E-value=2.5e-12 Score=142.25 Aligned_cols=159 Identities=13% Similarity=0.178 Sum_probs=107.4
Q ss_pred ccccccCCCCCchhHHHHHHHHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCc-----------------
Q 012383 114 NLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN----------------- 176 (465)
Q Consensus 114 ~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~----------------- 176 (465)
+|+.++|. ..++...++++... +.+..+|||||+|||||++++++|+.+++.
T Consensus 14 tFdEVIGQ---------e~Vv~~L~~aL~~g--RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I 82 (830)
T PRK07003 14 DFASLVGQ---------EHVVRALTHALDGG--RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREI 82 (830)
T ss_pred cHHHHcCc---------HHHHHHHHHHHhcC--CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHH
Confidence 55777776 33444455555533 567899999999999999999999998753
Q ss_pred -------eEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhh
Q 012383 177 -------PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIA 249 (465)
Q Consensus 177 -------~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~ll 249 (465)
++.++.+ ...+...||++.+.+...-..+...|+||||+|.+... ..+.|+..|
T Consensus 83 ~~G~h~DviEIDAa------s~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~-------------A~NALLKtL 143 (830)
T PRK07003 83 DEGRFVDYVEMDAA------SNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNH-------------AFNAMLKTL 143 (830)
T ss_pred hcCCCceEEEeccc------ccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHH-------------HHHHHHHHH
Confidence 2222211 11223456666665521111455689999999976321 123344555
Q ss_pred cCCccccCCCccccCCCCCceEEEEeCCCCCCChhhhcCCCceEEEe-CCCHHHHHHHHHHhccCCCCC
Q 012383 250 DNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVA 317 (465)
Q Consensus 250 D~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~-~P~~e~R~~Il~~~l~~~~v~ 317 (465)
+ +...++.+|++||+++.|.+.++. ||.++-. .++.++..++|+.++..+++.
T Consensus 144 E-------------EPP~~v~FILaTtd~~KIp~TIrS--RCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~ 197 (830)
T PRK07003 144 E-------------EPPPHVKFILATTDPQKIPVTVLS--RCLQFNLKQMPAGHIVSHLERILGEERIA 197 (830)
T ss_pred H-------------hcCCCeEEEEEECChhhccchhhh--heEEEecCCcCHHHHHHHHHHHHHHcCCC
Confidence 5 445678999999999999999886 7766666 778888888888888776654
No 74
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=6.9e-12 Score=133.57 Aligned_cols=144 Identities=14% Similarity=0.220 Sum_probs=95.1
Q ss_pred HHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCc------------------------eEEecccccccCCCCC
Q 012383 137 TKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGE 192 (465)
Q Consensus 137 ~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~------------------------~i~vs~s~L~s~~~Ge 192 (465)
.++.+... +.|..+|||||||||||++|+++|+.+++. ++.+++. ...
T Consensus 30 L~~~i~~~--ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEIdaa------s~~ 101 (484)
T PRK14956 30 LQNALKSG--KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEIDAA------SNR 101 (484)
T ss_pred HHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccceeechh------hcc
Confidence 44444433 356789999999999999999999998763 2222211 011
Q ss_pred hHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEE
Q 012383 193 PAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 272 (465)
Q Consensus 193 ~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI 272 (465)
....+|++.+.+...-..+...|+||||+|.+... ....|+..++ +....+.+|
T Consensus 102 gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~-------------A~NALLKtLE-------------EPp~~viFI 155 (484)
T PRK14956 102 GIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQ-------------SFNALLKTLE-------------EPPAHIVFI 155 (484)
T ss_pred cHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHH-------------HHHHHHHHhh-------------cCCCceEEE
Confidence 23456666555422112456789999999876321 1233444444 445678899
Q ss_pred EEeCCCCCCChhhhcCCCceEEEe-CCCHHHHHHHHHHhccCCCC
Q 012383 273 VTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNV 316 (465)
Q Consensus 273 ~TTN~~~~LD~ALlR~GRfd~~i~-~P~~e~R~~Il~~~l~~~~v 316 (465)
++||.++.|.++++. |+.++.. .++.++-.+.++.++...++
T Consensus 156 LaTte~~kI~~TI~S--RCq~~~f~~ls~~~i~~~L~~i~~~Egi 198 (484)
T PRK14956 156 LATTEFHKIPETILS--RCQDFIFKKVPLSVLQDYSEKLCKIENV 198 (484)
T ss_pred eecCChhhccHHHHh--hhheeeecCCCHHHHHHHHHHHHHHcCC
Confidence 999999999999987 7766555 77777777777777665554
No 75
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=1.2e-11 Score=132.42 Aligned_cols=169 Identities=11% Similarity=0.158 Sum_probs=106.6
Q ss_pred ccccccCCCCCchhHHHHHHHHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCC------------------
Q 012383 114 NLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI------------------ 175 (465)
Q Consensus 114 ~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~------------------ 175 (465)
+|+.++|..++ ....++.+... +.|.++|||||||||||++|+++|+.++.
T Consensus 12 ~~~divGq~~i---------~~~L~~~i~~~--~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i 80 (472)
T PRK14962 12 TFSEVVGQDHV---------KKLIINALKKN--SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSI 80 (472)
T ss_pred CHHHccCcHHH---------HHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHH
Confidence 55677776332 23334444333 46788999999999999999999999865
Q ss_pred ------ceEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhh
Q 012383 176 ------NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIA 249 (465)
Q Consensus 176 ------~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~ll 249 (465)
.++.++++. ..+...+|.+...+...-..+...||||||+|.+.. .....|+..+
T Consensus 81 ~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~-------------~a~~~LLk~L 141 (472)
T PRK14962 81 DEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTK-------------EAFNALLKTL 141 (472)
T ss_pred hcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHH-------------HHHHHHHHHH
Confidence 233333321 122345666655541111134567999999987631 1123444555
Q ss_pred cCCccccCCCccccCCCCCceEEEEeCCCCCCChhhhcCCCceEEEe-CCCHHHHHHHHHHhccCC--CCChhHHHHHhc
Q 012383 250 DNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRND--NVADDDIVKLVD 326 (465)
Q Consensus 250 D~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~-~P~~e~R~~Il~~~l~~~--~v~~~~la~lt~ 326 (465)
+ ...+.+.+|++||.+..+++++++ |+..+-. .|+.++...+++...... .++.+.+..++.
T Consensus 142 E-------------~p~~~vv~Ilattn~~kl~~~L~S--R~~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~ 206 (472)
T PRK14962 142 E-------------EPPSHVVFVLATTNLEKVPPTIIS--RCQVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAK 206 (472)
T ss_pred H-------------hCCCcEEEEEEeCChHhhhHHHhc--CcEEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 5 223456777788888899999987 5554444 889999999988887654 455555555555
Q ss_pred C
Q 012383 327 T 327 (465)
Q Consensus 327 g 327 (465)
.
T Consensus 207 ~ 207 (472)
T PRK14962 207 R 207 (472)
T ss_pred H
Confidence 3
No 76
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.38 E-value=3.4e-12 Score=135.60 Aligned_cols=183 Identities=16% Similarity=0.294 Sum_probs=109.2
Q ss_pred cccccccccCCCCCchhHHHHHHHHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHh-----CCceEEeccccc
Q 012383 111 RTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGEL 185 (465)
Q Consensus 111 r~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~el-----g~~~i~vs~s~L 185 (465)
..|+|+|.+.+ +. .+.....++.+...++. +..++||||||||||+|++++++++ +..++++++.++
T Consensus 100 ~~~tFdnFv~g----~~--n~~a~~~~~~~~~~~~~--~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f 171 (440)
T PRK14088 100 PDYTFENFVVG----PG--NSFAYHAALEVAKNPGR--YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF 171 (440)
T ss_pred CCCcccccccC----Cc--hHHHHHHHHHHHhCcCC--CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHH
Confidence 45788887654 11 12344556666555543 3469999999999999999999985 457788888776
Q ss_pred ccCCCCCh-HHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccC
Q 012383 186 ESGNAGEP-AKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE 264 (465)
Q Consensus 186 ~s~~~Ge~-~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~ 264 (465)
...+...- ...+ ..|... ....+.+|+|||++.+.+... .+ ..+..++..+.+
T Consensus 172 ~~~~~~~~~~~~~-~~f~~~----~~~~~dvLlIDDi~~l~~~~~--~q-----~elf~~~n~l~~-------------- 225 (440)
T PRK14088 172 LNDLVDSMKEGKL-NEFREK----YRKKVDVLLIDDVQFLIGKTG--VQ-----TELFHTFNELHD-------------- 225 (440)
T ss_pred HHHHHHHHhcccH-HHHHHH----HHhcCCEEEEechhhhcCcHH--HH-----HHHHHHHHHHHH--------------
Confidence 54332100 0001 112221 123688999999998865431 11 122222211211
Q ss_pred CCCCceEEEEeC-CCCC---CChhhhcCCCce--EEEe--CCCHHHHHHHHHHhccCC--CCChhHHHHHhcCCCch
Q 012383 265 ENPRVPIIVTGN-DFST---LYAPLIRDGRME--KFYW--APTREDRIGVCKGIFRND--NVADDDIVKLVDTFPGQ 331 (465)
Q Consensus 265 ~~~~V~VI~TTN-~~~~---LD~ALlR~GRfd--~~i~--~P~~e~R~~Il~~~l~~~--~v~~~~la~lt~gfsga 331 (465)
.+..+|+||| .|.. +.+.+.. ||. ..+. .|+.+.|.+|++...... .++.+.+.-++..+++.
T Consensus 226 --~~k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~~ 298 (440)
T PRK14088 226 --SGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDDN 298 (440)
T ss_pred --cCCeEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccccC
Confidence 1235666664 4544 4555654 443 3333 999999999999888654 45666667777776663
No 77
>PRK06893 DNA replication initiation factor; Validated
Probab=99.37 E-value=4.6e-12 Score=123.20 Aligned_cols=145 Identities=17% Similarity=0.212 Sum_probs=90.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh---CCceEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccC
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAG 226 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~ 226 (465)
..++||||||||||+|++++|+++ +....+++..... ......++. ..+..+|+||||+.+.+
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~------~~~~dlLilDDi~~~~~ 105 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ--------YFSPAVLEN------LEQQDLVCLDDLQAVIG 105 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh--------hhhHHHHhh------cccCCEEEEeChhhhcC
Confidence 368999999999999999999985 3344444443211 011122222 23457999999998865
Q ss_pred CCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeC-CCCCCC---hhhhcCCCceEEEe--CCCH
Q 012383 227 RMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGN-DFSTLY---APLIRDGRMEKFYW--APTR 300 (465)
Q Consensus 227 ~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN-~~~~LD---~ALlR~GRfd~~i~--~P~~ 300 (465)
+.. ....|+++++ .. ....+.++|.|+| .|..++ +.|.++.+....+. .|+.
T Consensus 106 ~~~-----------~~~~l~~l~n--------~~---~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~ 163 (229)
T PRK06893 106 NEE-----------WELAIFDLFN--------RI---KEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTD 163 (229)
T ss_pred ChH-----------HHHHHHHHHH--------HH---HHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCH
Confidence 431 1123444544 11 1122334455555 465554 78887666566666 9999
Q ss_pred HHHHHHHHHhccCC--CCChhHHHHHhcCCCc
Q 012383 301 EDRIGVCKGIFRND--NVADDDIVKLVDTFPG 330 (465)
Q Consensus 301 e~R~~Il~~~l~~~--~v~~~~la~lt~gfsg 330 (465)
++|.+|++...... .++.+.+.-++..+++
T Consensus 164 e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~ 195 (229)
T PRK06893 164 EQKIIVLQRNAYQRGIELSDEVANFLLKRLDR 195 (229)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC
Confidence 99999998777544 4556666666666654
No 78
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.37 E-value=2e-11 Score=121.15 Aligned_cols=146 Identities=16% Similarity=0.273 Sum_probs=92.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhCCceEEeccc------ccccCCCCChHHHHHHHHHHHH--------------HHHH
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG------ELESGNAGEPAKLIRQRYREAA--------------DIIK 209 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s------~L~s~~~Ge~~k~Ir~~F~~A~--------------~~i~ 209 (465)
..|||+||||||||++|+++|+.+|.+++.+++. ++...+.|...+.+...|.... .+..
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 101 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTL 101 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHH
Confidence 5789999999999999999999999999987654 3444443332222212121000 0000
Q ss_pred -hCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCcccc----CCCCCceEEEEeCCC-----C
Q 012383 210 -KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNK----EENPRVPIIVTGNDF-----S 279 (465)
Q Consensus 210 -~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~----~~~~~V~VI~TTN~~-----~ 279 (465)
.....+|+|||||.+- ..++..|+.+++. ..+.+++.... ...+...||+|+|.. .
T Consensus 102 A~~~g~~lllDEi~r~~-------------~~~q~~Ll~~Le~-~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~ 167 (262)
T TIGR02640 102 AVREGFTLVYDEFTRSK-------------PETNNVLLSVFEE-GVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVH 167 (262)
T ss_pred HHHcCCEEEEcchhhCC-------------HHHHHHHHHHhcC-CeEEccCCCCCCceEecCCCCEEEEeeCCcccccee
Confidence 1234699999998632 2244566677763 22233332111 122466799999976 3
Q ss_pred CCChhhhcCCCceEEEe-CCCHHHHHHHHHHhc
Q 012383 280 TLYAPLIRDGRMEKFYW-APTREDRIGVCKGIF 311 (465)
Q Consensus 280 ~LD~ALlR~GRfd~~i~-~P~~e~R~~Il~~~l 311 (465)
.++++|++ ||-.... .|+.++-.+|++.++
T Consensus 168 ~l~~aL~~--R~~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 168 ETQDALLD--RLITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred cccHHHHh--hcEEEECCCCCHHHHHHHHHHhh
Confidence 67899998 7754333 999999999998876
No 79
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.37 E-value=2.2e-11 Score=128.19 Aligned_cols=141 Identities=18% Similarity=0.222 Sum_probs=95.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCC
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRM 228 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r 228 (465)
+..++||||||||||++|+++|+.++..|+.+++... ....++.++..+......+...||||||+|.+...
T Consensus 36 ~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~-------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~- 107 (413)
T PRK13342 36 LSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS-------GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKA- 107 (413)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc-------cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHH-
Confidence 3479999999999999999999999999999887531 24556777777644333557899999999875321
Q ss_pred CCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEe--CCCCCCChhhhcCCCceEEEe-CCCHHHHHH
Q 012383 229 GGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYW-APTREDRIG 305 (465)
Q Consensus 229 ~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TT--N~~~~LD~ALlR~GRfd~~i~-~P~~e~R~~ 305 (465)
.+..|+..++ ...+.+|++| |....++++|++ |+..+.. .|+.++...
T Consensus 108 ------------~q~~LL~~le---------------~~~iilI~att~n~~~~l~~aL~S--R~~~~~~~~ls~e~i~~ 158 (413)
T PRK13342 108 ------------QQDALLPHVE---------------DGTITLIGATTENPSFEVNPALLS--RAQVFELKPLSEEDIEQ 158 (413)
T ss_pred ------------HHHHHHHHhh---------------cCcEEEEEeCCCChhhhccHHHhc--cceeeEeCCCCHHHHHH
Confidence 1233433333 1345666655 344579999987 5644333 888999999
Q ss_pred HHHHhccCC-----CCChhHHHHHhc
Q 012383 306 VCKGIFRND-----NVADDDIVKLVD 326 (465)
Q Consensus 306 Il~~~l~~~-----~v~~~~la~lt~ 326 (465)
+++..+... .++.+.+..+..
T Consensus 159 lL~~~l~~~~~~~i~i~~~al~~l~~ 184 (413)
T PRK13342 159 LLKRALEDKERGLVELDDEALDALAR 184 (413)
T ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHH
Confidence 888776431 455554444443
No 80
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.36 E-value=7.5e-12 Score=136.85 Aligned_cols=159 Identities=14% Similarity=0.196 Sum_probs=107.1
Q ss_pred ccccccCCCCCchhHHHHHHHHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCc-----------------
Q 012383 114 NLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN----------------- 176 (465)
Q Consensus 114 ~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~----------------- 176 (465)
+|+.++|. ..+....++++... +.+..+||+||+|||||++|+++|+.+++.
T Consensus 14 tFddVIGQ---------e~vv~~L~~al~~g--RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~ 82 (700)
T PRK12323 14 DFTTLVGQ---------EHVVRALTHALEQQ--RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCR 82 (700)
T ss_pred cHHHHcCc---------HHHHHHHHHHHHhC--CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccH
Confidence 55777776 33444455555433 557899999999999999999999998762
Q ss_pred ------------eEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHH
Q 012383 177 ------------PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNAT 244 (465)
Q Consensus 177 ------------~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~ 244 (465)
++.++++ .......||++.+.+...-..++..|+||||+|.+... ..+.
T Consensus 83 sC~~I~aG~hpDviEIdAa------s~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~-------------AaNA 143 (700)
T PRK12323 83 ACTEIDAGRFVDYIEMDAA------SNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNH-------------AFNA 143 (700)
T ss_pred HHHHHHcCCCCcceEeccc------ccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHH-------------HHHH
Confidence 1222211 01124456666665422212556789999999976321 1234
Q ss_pred HHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhhcCCCceEEEe-CCCHHHHHHHHHHhccCCCCC
Q 012383 245 LMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVA 317 (465)
Q Consensus 245 Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~-~P~~e~R~~Il~~~l~~~~v~ 317 (465)
|+..|+ +...++.+|++||+++.|.+.++. |+.++.. .++.++..+.++.++...++.
T Consensus 144 LLKTLE-------------EPP~~v~FILaTtep~kLlpTIrS--RCq~f~f~~ls~eei~~~L~~Il~~Egi~ 202 (700)
T PRK12323 144 MLKTLE-------------EPPEHVKFILATTDPQKIPVTVLS--RCLQFNLKQMPPGHIVSHLDAILGEEGIA 202 (700)
T ss_pred HHHhhc-------------cCCCCceEEEEeCChHhhhhHHHH--HHHhcccCCCChHHHHHHHHHHHHHcCCC
Confidence 555555 456778999999999999999986 6766555 888888888888777665544
No 81
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.36 E-value=1.4e-11 Score=122.35 Aligned_cols=154 Identities=18% Similarity=0.221 Sum_probs=105.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccC
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAG 226 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~ 226 (465)
...-.+|||||||.|||+||..||+++|+++-..+++.|. .+..+ -.++. .-....|||||||..+.+
T Consensus 50 e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~le-----K~gDl-aaiLt------~Le~~DVLFIDEIHrl~~ 117 (332)
T COG2255 50 EALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALE-----KPGDL-AAILT------NLEEGDVLFIDEIHRLSP 117 (332)
T ss_pred CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEeccccccc-----ChhhH-HHHHh------cCCcCCeEEEehhhhcCh
Confidence 3456899999999999999999999999999999998775 12111 11111 234457999999977643
Q ss_pred CCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccC--------CCCCceEEEEeCCCCCCChhhhcCCCceEEEe--
Q 012383 227 RMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE--------ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-- 296 (465)
Q Consensus 227 ~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~--------~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~-- 296 (465)
. +.+.|+-.+++ .++|-+.+.. +.+..-+|++|-+...|..+|+- ||.....
T Consensus 118 ~-------------vEE~LYpaMED---f~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrd--RFGi~~rle 179 (332)
T COG2255 118 A-------------VEEVLYPAMED---FRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRD--RFGIIQRLE 179 (332)
T ss_pred h-------------HHHHhhhhhhh---eeEEEEEccCCccceEeccCCCeeEeeeccccccccchhHH--hcCCeeeee
Confidence 2 33445444441 1222222211 23555799999999999999975 6665555
Q ss_pred CCCHHHHHHHHHHhccCCC--CChh---HHHHHhcCCCc
Q 012383 297 APTREDRIGVCKGIFRNDN--VADD---DIVKLVDTFPG 330 (465)
Q Consensus 297 ~P~~e~R~~Il~~~l~~~~--v~~~---~la~lt~gfsg 330 (465)
..+.++..+|+.......+ ++.+ ++++.+.|.+-
T Consensus 180 fY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPR 218 (332)
T COG2255 180 FYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTPR 218 (332)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCcH
Confidence 8999999999887765544 3443 66666666554
No 82
>PLN03025 replication factor C subunit; Provisional
Probab=99.34 E-value=1.2e-11 Score=125.91 Aligned_cols=161 Identities=13% Similarity=0.191 Sum_probs=100.0
Q ss_pred HHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhC-----CceEEecccccccCCCCChHHHHHHHHHHHHHH--
Q 012383 135 HITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMG-----INPIMMSAGELESGNAGEPAKLIRQRYREAADI-- 207 (465)
Q Consensus 135 ~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg-----~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~-- 207 (465)
...+.++..... | .+|||||||||||++|+++|+++. ..++.+++++.. | ...++...+.....
T Consensus 23 ~~L~~~~~~~~~--~-~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~----~--~~~vr~~i~~~~~~~~ 93 (319)
T PLN03025 23 SRLQVIARDGNM--P-NLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDR----G--IDVVRNKIKMFAQKKV 93 (319)
T ss_pred HHHHHHHhcCCC--c-eEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccc----c--HHHHHHHHHHHHhccc
Confidence 334445443332 3 589999999999999999999972 234555554322 1 12344443322110
Q ss_pred -HHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhh
Q 012383 208 -IKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLI 286 (465)
Q Consensus 208 -i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALl 286 (465)
...+...||||||+|.+... .++.|...++ .......+|.+||..+.+.++|+
T Consensus 94 ~~~~~~~kviiiDE~d~lt~~-------------aq~aL~~~lE-------------~~~~~t~~il~~n~~~~i~~~L~ 147 (319)
T PLN03025 94 TLPPGRHKIVILDEADSMTSG-------------AQQALRRTME-------------IYSNTTRFALACNTSSKIIEPIQ 147 (319)
T ss_pred cCCCCCeEEEEEechhhcCHH-------------HHHHHHHHHh-------------cccCCceEEEEeCCccccchhHH
Confidence 01245789999999986432 1233444444 12234568889999999999998
Q ss_pred cCCCceEEEe-CCCHHHHHHHHHHhccCCC--CChhHHHHHhcCCCchhh
Q 012383 287 RDGRMEKFYW-APTREDRIGVCKGIFRNDN--VADDDIVKLVDTFPGQSI 333 (465)
Q Consensus 287 R~GRfd~~i~-~P~~e~R~~Il~~~l~~~~--v~~~~la~lt~gfsgadl 333 (465)
. |+..+-. .|+.++...+++..++..+ ++.+.+..++....| |+
T Consensus 148 S--Rc~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g-Dl 194 (319)
T PLN03025 148 S--RCAIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG-DM 194 (319)
T ss_pred H--hhhcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 6 5543333 8899999999988887665 456666666655443 44
No 83
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.32 E-value=1.8e-11 Score=134.16 Aligned_cols=159 Identities=13% Similarity=0.158 Sum_probs=105.2
Q ss_pred ccccccCCCCCchhHHHHHHHHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCc-----------------
Q 012383 114 NLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN----------------- 176 (465)
Q Consensus 114 ~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~----------------- 176 (465)
+|+.++|.. .+....++.+.. -+.+..+||+||||||||++|+++|+.+++.
T Consensus 13 tFddVIGQe---------~vv~~L~~aI~~--grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I 81 (702)
T PRK14960 13 NFNELVGQN---------HVSRALSSALER--GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAV 81 (702)
T ss_pred CHHHhcCcH---------HHHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHH
Confidence 557777762 233444455443 3557899999999999999999999998762
Q ss_pred -------eEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhh
Q 012383 177 -------PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIA 249 (465)
Q Consensus 177 -------~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~ll 249 (465)
++.++++. ......+|.+...+...-..++..|+||||+|.+... ....|+..+
T Consensus 82 ~~g~hpDviEIDAAs------~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~-------------A~NALLKtL 142 (702)
T PRK14960 82 NEGRFIDLIEIDAAS------RTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTH-------------SFNALLKTL 142 (702)
T ss_pred hcCCCCceEEecccc------cCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHH-------------HHHHHHHHH
Confidence 22233221 0123456666554411112456789999999866321 123455555
Q ss_pred cCCccccCCCccccCCCCCceEEEEeCCCCCCChhhhcCCCceEEEe-CCCHHHHHHHHHHhccCCCCC
Q 012383 250 DNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVA 317 (465)
Q Consensus 250 D~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~-~P~~e~R~~Il~~~l~~~~v~ 317 (465)
+ +....+.+|++||++..+++.+++ |+.++-. .++.++..+.++.++...++.
T Consensus 143 E-------------EPP~~v~FILaTtd~~kIp~TIlS--RCq~feFkpLs~eEI~k~L~~Il~kEgI~ 196 (702)
T PRK14960 143 E-------------EPPEHVKFLFATTDPQKLPITVIS--RCLQFTLRPLAVDEITKHLGAILEKEQIA 196 (702)
T ss_pred h-------------cCCCCcEEEEEECChHhhhHHHHH--hhheeeccCCCHHHHHHHHHHHHHHcCCC
Confidence 5 334667889999999999988875 7766555 888899888888888766544
No 84
>PRK05642 DNA replication initiation factor; Validated
Probab=99.31 E-value=2.6e-11 Score=118.48 Aligned_cols=173 Identities=12% Similarity=0.185 Sum_probs=102.9
Q ss_pred ccccccccCCCCCchhHHHHHHHHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEecccccccC
Q 012383 112 TYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG 188 (465)
Q Consensus 112 ~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~s~L~s~ 188 (465)
.|+|+|.+.+. ...+...++++....+-.....++||||+|||||+|++++++++ +..+++++..++...
T Consensus 15 ~~tfdnF~~~~-------~~~a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~ 87 (234)
T PRK05642 15 DATFANYYPGA-------NAAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR 87 (234)
T ss_pred cccccccCcCC-------hHHHHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh
Confidence 46778876442 13345555555432222234679999999999999999999864 677888888776632
Q ss_pred CCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCC
Q 012383 189 NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPR 268 (465)
Q Consensus 189 ~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~ 268 (465)
. ..+.+.. + ...+|+|||++.+.++.. .+..|+.+++ .. .. .+
T Consensus 88 ~--------~~~~~~~----~--~~d~LiiDDi~~~~~~~~-----------~~~~Lf~l~n--------~~---~~-~g 130 (234)
T PRK05642 88 G--------PELLDNL----E--QYELVCLDDLDVIAGKAD-----------WEEALFHLFN--------RL---RD-SG 130 (234)
T ss_pred h--------HHHHHhh----h--hCCEEEEechhhhcCChH-----------HHHHHHHHHH--------HH---Hh-cC
Confidence 1 1111111 2 225899999998765421 1223445554 11 11 22
Q ss_pred ceEEEEeCC-CCC---CChhhhcCCCc--eEEEe--CCCHHHHHHHHHHhccCC--CCChhHHHHHhcCCCc
Q 012383 269 VPIIVTGND-FST---LYAPLIRDGRM--EKFYW--APTREDRIGVCKGIFRND--NVADDDIVKLVDTFPG 330 (465)
Q Consensus 269 V~VI~TTN~-~~~---LD~ALlR~GRf--d~~i~--~P~~e~R~~Il~~~l~~~--~v~~~~la~lt~gfsg 330 (465)
..+|+|+|. |.. +.+.|.. || -..+. .|+.++|.+|++...... .++.+.+.-++..+.+
T Consensus 131 ~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~~~ 200 (234)
T PRK05642 131 RRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGTR 200 (234)
T ss_pred CEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC
Confidence 345666654 433 3577775 55 23343 889999999988555443 4555555555555544
No 85
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.31 E-value=9.2e-11 Score=132.76 Aligned_cols=160 Identities=12% Similarity=0.109 Sum_probs=103.9
Q ss_pred cccccccCCCCCchhHHHHHHHHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCc----------------
Q 012383 113 YNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN---------------- 176 (465)
Q Consensus 113 ~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~---------------- 176 (465)
-+|+.++|. ..+....++++... +.+..+|||||+|||||++|+++|+.+.+.
T Consensus 12 ~~f~eiiGq---------e~v~~~L~~~i~~~--ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~ 80 (824)
T PRK07764 12 ATFAEVIGQ---------EHVTEPLSTALDSG--RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVA 80 (824)
T ss_pred CCHHHhcCc---------HHHHHHHHHHHHhC--CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHH
Confidence 355777766 33344445555432 567889999999999999999999998752
Q ss_pred ----------eEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHH
Q 012383 177 ----------PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLM 246 (465)
Q Consensus 177 ----------~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll 246 (465)
++.+++.. -.....||.+-+++.-.-..+...|+||||+|.+.. .-.+.|+
T Consensus 81 ~~~g~~~~~dv~eidaas------~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~-------------~a~NaLL 141 (824)
T PRK07764 81 LAPGGPGSLDVTEIDAAS------HGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTP-------------QGFNALL 141 (824)
T ss_pred HHcCCCCCCcEEEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCH-------------HHHHHHH
Confidence 11121110 012344555443331111246678999999997632 1234566
Q ss_pred HhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhhcCCCceEEEe-CCCHHHHHHHHHHhccCCCCC
Q 012383 247 NIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVA 317 (465)
Q Consensus 247 ~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~-~P~~e~R~~Il~~~l~~~~v~ 317 (465)
++|+ +....+.+|++|+.++.|.+.|+. |+..+-+ .++.++..++|+.++...++.
T Consensus 142 K~LE-------------EpP~~~~fIl~tt~~~kLl~TIrS--Rc~~v~F~~l~~~~l~~~L~~il~~EGv~ 198 (824)
T PRK07764 142 KIVE-------------EPPEHLKFIFATTEPDKVIGTIRS--RTHHYPFRLVPPEVMRGYLERICAQEGVP 198 (824)
T ss_pred HHHh-------------CCCCCeEEEEEeCChhhhhHHHHh--heeEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence 6776 334567788888899999998876 5554444 788889888888888776664
No 86
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.31 E-value=7.5e-11 Score=121.00 Aligned_cols=140 Identities=17% Similarity=0.288 Sum_probs=87.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHhC---------CceEEecccccccC----------CC--CC-------h-HHHH
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKMG---------INPIMMSAGELESG----------NA--GE-------P-AKLI 197 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~elg---------~~~i~vs~s~L~s~----------~~--Ge-------~-~k~I 197 (465)
..|..++||||||||||++++++++++. +.++.+++....+. .. |. + ...+
T Consensus 38 ~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 117 (365)
T TIGR02928 38 SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVF 117 (365)
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHH
Confidence 3456899999999999999999998753 45677776543211 10 11 1 1222
Q ss_pred HHHHHHHHHHHH-hCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeC
Q 012383 198 RQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGN 276 (465)
Q Consensus 198 r~~F~~A~~~i~-~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN 276 (465)
..+++. +. ...+.||+|||+|.+.+.. + .. |.++++ +. ........++.+|++||
T Consensus 118 ~~l~~~----l~~~~~~~vlvIDE~d~L~~~~----~-----~~----L~~l~~------~~-~~~~~~~~~v~lI~i~n 173 (365)
T TIGR02928 118 RRLYKE----LNERGDSLIIVLDEIDYLVGDD----D-----DL----LYQLSR------AR-SNGDLDNAKVGVIGISN 173 (365)
T ss_pred HHHHHH----HHhcCCeEEEEECchhhhccCC----c-----HH----HHhHhc------cc-cccCCCCCeEEEEEEEC
Confidence 333332 23 4668899999999997321 1 12 222222 00 00112336789999999
Q ss_pred CCC---CCChhhhcCCCce-EEEe--CCCHHHHHHHHHHhcc
Q 012383 277 DFS---TLYAPLIRDGRME-KFYW--APTREDRIGVCKGIFR 312 (465)
Q Consensus 277 ~~~---~LD~ALlR~GRfd-~~i~--~P~~e~R~~Il~~~l~ 312 (465)
+++ .+++.+.+ ||. ..+. +++.++..+|++..+.
T Consensus 174 ~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~ 213 (365)
T TIGR02928 174 DLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAE 213 (365)
T ss_pred CcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHH
Confidence 986 57777765 443 2333 8899999999988764
No 87
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.30 E-value=5.7e-11 Score=133.62 Aligned_cols=166 Identities=13% Similarity=0.174 Sum_probs=104.9
Q ss_pred cccccccCCCCCchhHHHHHHHHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceE------Eec--ccc
Q 012383 113 YNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPI------MMS--AGE 184 (465)
Q Consensus 113 ~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i------~vs--~s~ 184 (465)
-+|+.++|. ..+....++++... +.|..+|||||||||||++|+++|+.+++.-. ... +-.
T Consensus 13 ~tFddIIGQ---------e~Iv~~LknaI~~~--rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~ 81 (944)
T PRK14949 13 ATFEQMVGQ---------SHVLHALTNALTQQ--RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVE 81 (944)
T ss_pred CCHHHhcCc---------HHHHHHHHHHHHhC--CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHH
Confidence 356777777 33444455655533 56788999999999999999999999876411 000 000
Q ss_pred cccC-------CCC---ChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCcc
Q 012383 185 LESG-------NAG---EPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTC 254 (465)
Q Consensus 185 L~s~-------~~G---e~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~ 254 (465)
+.+. +-+ .....||.+...+...-..+...|+||||+|.+.. .....|+..+.
T Consensus 82 i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~-------------eAqNALLKtLE---- 144 (944)
T PRK14949 82 IAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSR-------------SSFNALLKTLE---- 144 (944)
T ss_pred HhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCH-------------HHHHHHHHHHh----
Confidence 0000 001 12344666655542111245668999999987631 12344555555
Q ss_pred ccCCCccccCCCCCceEEEEeCCCCCCChhhhcCCCceEEEe-CCCHHHHHHHHHHhccCCCCC
Q 012383 255 VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVA 317 (465)
Q Consensus 255 v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~-~P~~e~R~~Il~~~l~~~~v~ 317 (465)
+....+.+|++|+.+..|.+.++. |+-++.. .++.++..+.++.++...++.
T Consensus 145 ---------EPP~~vrFILaTTe~~kLl~TIlS--RCq~f~fkpLs~eEI~~~L~~il~~EgI~ 197 (944)
T PRK14949 145 ---------EPPEHVKFLLATTDPQKLPVTVLS--RCLQFNLKSLTQDEIGTQLNHILTQEQLP 197 (944)
T ss_pred ---------ccCCCeEEEEECCCchhchHHHHH--hheEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 445677888889999999999886 6655544 778888888887777655444
No 88
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.30 E-value=2.6e-11 Score=122.71 Aligned_cols=155 Identities=16% Similarity=0.230 Sum_probs=94.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhC-----CceEEecccccccCC-------------CCC-------hHHHHHHHHHHHH
Q 012383 151 ILGIWGGKGQGKSFQCELVFAKMG-----INPIMMSAGELESGN-------------AGE-------PAKLIRQRYREAA 205 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~elg-----~~~i~vs~s~L~s~~-------------~Ge-------~~k~Ir~~F~~A~ 205 (465)
.+|||||||||||++|+++++++. .+++.++++++.... .+. ....++.+.+...
T Consensus 38 ~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYA 117 (337)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHH
Confidence 689999999999999999999974 346777776653221 111 0122233222221
Q ss_pred HHHH-hCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChh
Q 012383 206 DIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAP 284 (465)
Q Consensus 206 ~~i~-~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~A 284 (465)
.... ...+.+|||||+|.+... ....|..+++ .......+|++|+.+..+.++
T Consensus 118 ~~~~~~~~~~vlilDe~~~l~~~-------------~~~~L~~~le-------------~~~~~~~~Il~~~~~~~~~~~ 171 (337)
T PRK12402 118 SYRPLSADYKTILLDNAEALRED-------------AQQALRRIME-------------QYSRTCRFIIATRQPSKLIPP 171 (337)
T ss_pred hcCCCCCCCcEEEEeCcccCCHH-------------HHHHHHHHHH-------------hccCCCeEEEEeCChhhCchh
Confidence 1111 234579999999876321 1223444444 112234567777777888888
Q ss_pred hhcCCCceEEEe-CCCHHHHHHHHHHhccCCC--CChhHHHHHhcCCCchhhH
Q 012383 285 LIRDGRMEKFYW-APTREDRIGVCKGIFRNDN--VADDDIVKLVDTFPGQSID 334 (465)
Q Consensus 285 LlR~GRfd~~i~-~P~~e~R~~Il~~~l~~~~--v~~~~la~lt~gfsgadld 334 (465)
|.. |+..... .|+.++...+++.++...+ ++.+.+..++... +.++.
T Consensus 172 L~s--r~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~-~gdlr 221 (337)
T PRK12402 172 IRS--RCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYA-GGDLR 221 (337)
T ss_pred hcC--CceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCCHH
Confidence 876 4443333 8999999999988877655 4555666666554 44443
No 89
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.29 E-value=5.4e-11 Score=123.41 Aligned_cols=144 Identities=16% Similarity=0.275 Sum_probs=88.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHh-----CCceEEeccccccc----------CCCCC----hHHHHHHHHHHHHHHH
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELES----------GNAGE----PAKLIRQRYREAADII 208 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~el-----g~~~i~vs~s~L~s----------~~~Ge----~~k~Ir~~F~~A~~~i 208 (465)
.|..++||||||||||++++.+++++ ++.++.+++....+ ...+. .......++....+.+
T Consensus 54 ~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l 133 (394)
T PRK00411 54 RPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYL 133 (394)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHH
Confidence 35678999999999999999999986 56788887653321 11110 1111223333333333
Q ss_pred H-hCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC---CCChh
Q 012383 209 K-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS---TLYAP 284 (465)
Q Consensus 209 ~-~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~---~LD~A 284 (465)
. ...+.||+|||+|.+....+ . ..+. .|+.+++ . ....++.+|+++|..+ .+++.
T Consensus 134 ~~~~~~~viviDE~d~l~~~~~---~-----~~l~-~l~~~~~--------~----~~~~~v~vI~i~~~~~~~~~l~~~ 192 (394)
T PRK00411 134 DERDRVLIVALDDINYLFEKEG---N-----DVLY-SLLRAHE--------E----YPGARIGVIGISSDLTFLYILDPR 192 (394)
T ss_pred HhcCCEEEEEECCHhHhhccCC---c-----hHHH-HHHHhhh--------c----cCCCeEEEEEEECCcchhhhcCHH
Confidence 4 45689999999999873221 1 2222 2223322 1 1223788999999874 46776
Q ss_pred hhcCCCceEEEe-CCCHHHHHHHHHHhcc
Q 012383 285 LIRDGRMEKFYW-APTREDRIGVCKGIFR 312 (465)
Q Consensus 285 LlR~GRfd~~i~-~P~~e~R~~Il~~~l~ 312 (465)
+.+..+...+.. .++.++..+|++..+.
T Consensus 193 ~~s~~~~~~i~f~py~~~e~~~il~~r~~ 221 (394)
T PRK00411 193 VKSVFRPEEIYFPPYTADEIFDILKDRVE 221 (394)
T ss_pred HHhcCCcceeecCCCCHHHHHHHHHHHHH
Confidence 654322233333 8899999999887764
No 90
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.29 E-value=5.6e-11 Score=123.19 Aligned_cols=170 Identities=15% Similarity=0.179 Sum_probs=101.5
Q ss_pred ccccccCCCCCchhHHHHHHHHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEec--------c---
Q 012383 114 NLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS--------A--- 182 (465)
Q Consensus 114 ~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs--------~--- 182 (465)
+|+.++|. +.+....++.+... +.|..+||+||||||||++|+++|+++.+...... +
T Consensus 14 ~~~~iiGq---------~~~~~~l~~~~~~~--~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~ 82 (363)
T PRK14961 14 YFRDIIGQ---------KHIVTAISNGLSLG--RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEI 82 (363)
T ss_pred chhhccCh---------HHHHHHHHHHHHcC--CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHH
Confidence 45777766 22333344444432 56788999999999999999999999864211100 0
Q ss_pred -----cccccCCC--CChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccc
Q 012383 183 -----GELESGNA--GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCV 255 (465)
Q Consensus 183 -----s~L~s~~~--Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v 255 (465)
.++..-.. ......++.+...+...-..+...|+||||+|.+.. . ....|+..++
T Consensus 83 ~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~------------~-a~naLLk~lE----- 144 (363)
T PRK14961 83 EKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSR------------H-SFNALLKTLE----- 144 (363)
T ss_pred hcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCH------------H-HHHHHHHHHh-----
Confidence 01110000 012344555555431000133457999999987531 1 1123444444
Q ss_pred cCCCccccCCCCCceEEEEeCCCCCCChhhhcCCCceEEEe-CCCHHHHHHHHHHhccCCC--CChhHHH
Q 012383 256 QLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDN--VADDDIV 322 (465)
Q Consensus 256 ~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~-~P~~e~R~~Il~~~l~~~~--v~~~~la 322 (465)
+....+.+|++|++++.+.++++. |+-.+-. .|+.++..++++..++..+ ++.+.+.
T Consensus 145 --------e~~~~~~fIl~t~~~~~l~~tI~S--Rc~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~ 204 (363)
T PRK14961 145 --------EPPQHIKFILATTDVEKIPKTILS--RCLQFKLKIISEEKIFNFLKYILIKESIDTDEYALK 204 (363)
T ss_pred --------cCCCCeEEEEEcCChHhhhHHHHh--hceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 234566788888889999999875 5544333 8899999999988887665 4444433
No 91
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.29 E-value=1.2e-12 Score=116.38 Aligned_cols=120 Identities=18% Similarity=0.178 Sum_probs=73.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccc------cCCC---CChHHHHHHHHHHHHHHHHhCCceEEEeccc
Q 012383 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE------SGNA---GEPAKLIRQRYREAADIIKKGKMCCLMINDL 221 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~------s~~~---Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEI 221 (465)
.|||+||||||||++|+.+|+.++.+++.++.+... ..|. |.. ......+-+| ...++|||||||
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~-~~~~~~l~~a-----~~~~~il~lDEi 74 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQF-EFKDGPLVRA-----MRKGGILVLDEI 74 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTT-CEEE-CCCTT-----HHEEEEEEESSC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccc-cccccccccc-----ccceeEEEECCc
Confidence 589999999999999999999999999887765432 1111 000 0000001111 126899999999
Q ss_pred ccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCC------CceEEEEeCCCC----CCChhhhcCCCc
Q 012383 222 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP------RVPIIVTGNDFS----TLYAPLIRDGRM 291 (465)
Q Consensus 222 Dai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~------~V~VI~TTN~~~----~LD~ALlR~GRf 291 (465)
+..- ..+.+.|+.++++-......+........ +..+|+|+|..+ .+++||+| ||
T Consensus 75 n~a~-------------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 75 NRAP-------------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp GG---------------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred ccCC-------------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 7531 34555677777754433222221111112 489999999999 99999998 65
No 92
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.28 E-value=4.7e-11 Score=134.14 Aligned_cols=142 Identities=17% Similarity=0.215 Sum_probs=95.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhCCceEEeccccccc-----CCCCChHHHH----HHHHHHHHHHHHhCCceEEEecc
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES-----GNAGEPAKLI----RQRYREAADIIKKGKMCCLMIND 220 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s-----~~~Ge~~k~I----r~~F~~A~~~i~~~~p~ILfIDE 220 (465)
..+||+||||||||++|+++|+.++.+++.++++++.. ..+|.+...+ ...+..+ ++....+||||||
T Consensus 489 ~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~---v~~~p~sVlllDE 565 (758)
T PRK11034 489 GSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDA---VIKHPHAVLLLDE 565 (758)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCcccccccchHHHH---HHhCCCcEEEecc
Confidence 46899999999999999999999999999988877643 2223211100 0122222 2455679999999
Q ss_pred cccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC----------------------
Q 012383 221 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF---------------------- 278 (465)
Q Consensus 221 IDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~---------------------- 278 (465)
||++. ..+.+.|++++|+-.... +........+++||+|||.-
T Consensus 566 ieka~-------------~~v~~~LLq~ld~G~ltd--~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~ 630 (758)
T PRK11034 566 IEKAH-------------PDVFNLLLQVMDNGTLTD--NNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAME 630 (758)
T ss_pred Hhhhh-------------HHHHHHHHHHHhcCeeec--CCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHH
Confidence 99763 235677888888432211 11112334788999999932
Q ss_pred ---CCCChhhhcCCCceEEEe--CCCHHHHHHHHHHhc
Q 012383 279 ---STLYAPLIRDGRMEKFYW--APTREDRIGVCKGIF 311 (465)
Q Consensus 279 ---~~LD~ALlR~GRfd~~i~--~P~~e~R~~Il~~~l 311 (465)
..+.|.|+. |+|.++. ..+.++..+|+..++
T Consensus 631 ~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l 666 (758)
T PRK11034 631 EIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFI 666 (758)
T ss_pred HHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHH
Confidence 235677774 9997776 778888888887665
No 93
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.27 E-value=1.5e-11 Score=119.12 Aligned_cols=182 Identities=21% Similarity=0.273 Sum_probs=104.0
Q ss_pred cccccccccCCCCCchhHHHHHHHHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHh-----CCceEEeccccc
Q 012383 111 RTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGEL 185 (465)
Q Consensus 111 r~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~el-----g~~~i~vs~s~L 185 (465)
.+|||+|.+.+.. .+.+.+.++.....++.. -..++||||+|+|||+|..++++++ +..++++++.++
T Consensus 3 ~~~tFdnfv~g~~------N~~a~~~~~~ia~~~~~~-~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f 75 (219)
T PF00308_consen 3 PKYTFDNFVVGES------NELAYAAAKAIAENPGER-YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEF 75 (219)
T ss_dssp TT-SCCCS--TTT------THHHHHHHHHHHHSTTTS-SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHH
T ss_pred CCCccccCCcCCc------HHHHHHHHHHHHhcCCCC-CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHH
Confidence 3688899754311 244566666666655542 2348999999999999999999884 567888888776
Q ss_pred ccCCCCChH-HHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccC
Q 012383 186 ESGNAGEPA-KLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE 264 (465)
Q Consensus 186 ~s~~~Ge~~-k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~ 264 (465)
...+...-. ..+ ..|.. .-....+|+|||++.+.++ +..+..|+.+++ .. .
T Consensus 76 ~~~~~~~~~~~~~-~~~~~-----~~~~~DlL~iDDi~~l~~~-----------~~~q~~lf~l~n--------~~---~ 127 (219)
T PF00308_consen 76 IREFADALRDGEI-EEFKD-----RLRSADLLIIDDIQFLAGK-----------QRTQEELFHLFN--------RL---I 127 (219)
T ss_dssp HHHHHHHHHTTSH-HHHHH-----HHCTSSEEEEETGGGGTTH-----------HHHHHHHHHHHH--------HH---H
T ss_pred HHHHHHHHHcccc-hhhhh-----hhhcCCEEEEecchhhcCc-----------hHHHHHHHHHHH--------HH---H
Confidence 533211000 000 01111 1335679999999987643 223345555555 11 1
Q ss_pred CCCCceEEEEeCC-CCC---CChhhhcCCCceE--EEe--CCCHHHHHHHHHHhccCCC--CChhHHHHHhcCCCc
Q 012383 265 ENPRVPIIVTGND-FST---LYAPLIRDGRMEK--FYW--APTREDRIGVCKGIFRNDN--VADDDIVKLVDTFPG 330 (465)
Q Consensus 265 ~~~~V~VI~TTN~-~~~---LD~ALlR~GRfd~--~i~--~P~~e~R~~Il~~~l~~~~--v~~~~la~lt~gfsg 330 (465)
..+..+|+|++. |.. +++.|.. ||.- .+. .|+.+.|.+|++......+ ++.+.+.-+...++.
T Consensus 128 -~~~k~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~ 200 (219)
T PF00308_consen 128 -ESGKQLILTSDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRR 200 (219)
T ss_dssp -HTTSEEEEEESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTS
T ss_pred -hhCCeEEEEeCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcC
Confidence 123467777754 343 4566654 4432 333 9999999999998886654 445555555555543
No 94
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.27 E-value=2.9e-12 Score=119.74 Aligned_cols=128 Identities=12% Similarity=0.125 Sum_probs=86.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHhCC----ceEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEeccccc
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAKMGI----NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA 223 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~elg~----~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDa 223 (465)
|-..+||.||+|||||.+|+++|..+.. +++.++.+++... ++....+..++..+..........||||||||+
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 3457889999999999999999999996 9999999988761 111223334444332222222334999999999
Q ss_pred ccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCC
Q 012383 224 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTL 281 (465)
Q Consensus 224 i~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~L 281 (465)
+..+. .....+....+++.|++++++-+... .........++++|+|||--...
T Consensus 80 a~~~~--~~~~~v~~~~V~~~LL~~le~g~~~d--~~g~~vd~~n~ifI~Tsn~~~~~ 133 (171)
T PF07724_consen 80 AHPSN--SGGADVSGEGVQNSLLQLLEGGTLTD--SYGRTVDTSNIIFIMTSNFGAEE 133 (171)
T ss_dssp CSHTT--TTCSHHHHHHHHHHHHHHHHHSEEEE--TTCCEEEGTTEEEEEEESSSTHH
T ss_pred ccccc--cccchhhHHHHHHHHHHHhcccceec--ccceEEEeCCceEEEecccccch
Confidence 98763 34466777888999999998433221 11123445889999999976543
No 95
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.27 E-value=6.2e-11 Score=115.77 Aligned_cols=157 Identities=13% Similarity=0.203 Sum_probs=91.7
Q ss_pred HHHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhC---CceEEecccccccCCCCChHHHHHHHHHHHHHHHH
Q 012383 133 VVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGELESGNAGEPAKLIRQRYREAADIIK 209 (465)
Q Consensus 133 ~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg---~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~ 209 (465)
.+..++.+....+ +..++||||||||||+|++++++++. ..+.+++...... ...+..+.. .
T Consensus 32 a~~~l~~~~~~~~---~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~--------~~~~~~~~~----~ 96 (235)
T PRK08084 32 LLAALQNALRQEH---SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAW--------FVPEVLEGM----E 96 (235)
T ss_pred HHHHHHHHHhCCC---CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhh--------hhHHHHHHh----h
Confidence 4444555443322 34799999999999999999998854 4455555543221 011111111 1
Q ss_pred hCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC-CC---CChhh
Q 012383 210 KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF-ST---LYAPL 285 (465)
Q Consensus 210 ~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~-~~---LD~AL 285 (465)
+..+|+||||+.+.++.. .+..|+.+++ .. .+.+++.+|+||+.+ .. +.|.|
T Consensus 97 --~~dlliiDdi~~~~~~~~-----------~~~~lf~l~n--------~~---~e~g~~~li~ts~~~p~~l~~~~~~L 152 (235)
T PRK08084 97 --QLSLVCIDNIECIAGDEL-----------WEMAIFDLYN--------RI---LESGRTRLLITGDRPPRQLNLGLPDL 152 (235)
T ss_pred --hCCEEEEeChhhhcCCHH-----------HHHHHHHHHH--------HH---HHcCCCeEEEeCCCChHHcCcccHHH
Confidence 136899999998765421 1122333333 11 112344566666654 33 57888
Q ss_pred hcCCCce--EEEe--CCCHHHHHHHHHHhccCC--CCChhHHHHHhcCCCc
Q 012383 286 IRDGRME--KFYW--APTREDRIGVCKGIFRND--NVADDDIVKLVDTFPG 330 (465)
Q Consensus 286 lR~GRfd--~~i~--~P~~e~R~~Il~~~l~~~--~v~~~~la~lt~gfsg 330 (465)
+. |+. ..+. .|+.++|.+|++...... .++++.+.-++..+.+
T Consensus 153 ~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~ 201 (235)
T PRK08084 153 AS--RLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDR 201 (235)
T ss_pred HH--HHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC
Confidence 86 663 3344 889999999998866544 4556666666665555
No 96
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.26 E-value=7e-11 Score=113.03 Aligned_cols=159 Identities=16% Similarity=0.210 Sum_probs=96.8
Q ss_pred HHHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEecccccccCCCCChHHHHHHHHHHHHHHHH
Q 012383 133 VVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK 209 (465)
Q Consensus 133 ~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~ 209 (465)
.+...++++. ...+..++|+||||||||++|+++++++ +.+++++++..+.... ...+..
T Consensus 25 ~~~~l~~~~~---~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~~~~~------ 87 (226)
T TIGR03420 25 LLAALRQLAA---GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD--------PEVLEG------ 87 (226)
T ss_pred HHHHHHHHHh---cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH--------HHHHhh------
Confidence 3444444433 2456799999999999999999999886 4678888887765321 122221
Q ss_pred hCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCC-CCCCC---hhh
Q 012383 210 KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND-FSTLY---APL 285 (465)
Q Consensus 210 ~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~-~~~LD---~AL 285 (465)
.....+|+|||+|.+..... ....|..+++ .. ... +..+|+|||. +..++ +.|
T Consensus 88 ~~~~~lLvIDdi~~l~~~~~-----------~~~~L~~~l~--------~~---~~~-~~~iIits~~~~~~~~~~~~~L 144 (226)
T TIGR03420 88 LEQADLVCLDDVEAIAGQPE-----------WQEALFHLYN--------RV---REA-GGRLLIAGRAAPAQLPLRLPDL 144 (226)
T ss_pred cccCCEEEEeChhhhcCChH-----------HHHHHHHHHH--------HH---HHc-CCeEEEECCCChHHCCcccHHH
Confidence 12346999999997654311 0122333333 11 111 2256667764 33332 666
Q ss_pred hcCCCceEEEe--CCCHHHHHHHHHHhccCC--CCChhHHHHHhcCCCch
Q 012383 286 IRDGRMEKFYW--APTREDRIGVCKGIFRND--NVADDDIVKLVDTFPGQ 331 (465)
Q Consensus 286 lR~GRfd~~i~--~P~~e~R~~Il~~~l~~~--~v~~~~la~lt~gfsga 331 (465)
.++..+...+. .|+.+++..+++.+.... .++.+.+..+...++|.
T Consensus 145 ~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~gn 194 (226)
T TIGR03420 145 RTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRD 194 (226)
T ss_pred HHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCC
Confidence 65333345555 778899999988776543 46677777777765553
No 97
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.26 E-value=3.3e-10 Score=126.49 Aligned_cols=141 Identities=16% Similarity=0.183 Sum_probs=91.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHh----------CCceEEecccccccCC----------CC-------ChHHHHHHH
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELESGN----------AG-------EPAKLIRQR 200 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~el----------g~~~i~vs~s~L~s~~----------~G-------e~~k~Ir~~ 200 (465)
+...|+|+|+||||||.+++.|..++ .+.++++++..+...+ .| .....+..+
T Consensus 780 pnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerL 859 (1164)
T PTZ00112 780 SNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRL 859 (1164)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHH
Confidence 34456799999999999999998875 2556788875432211 01 122344444
Q ss_pred HHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCC---
Q 012383 201 YREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND--- 277 (465)
Q Consensus 201 F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~--- 277 (465)
|.... -......||+|||||.+.... +..|++|++- ......++.||+++|.
T Consensus 860 F~~L~--k~~r~v~IIILDEID~L~kK~-------------QDVLYnLFR~----------~~~s~SKLiLIGISNdlDL 914 (1164)
T PTZ00112 860 FNQNK--KDNRNVSILIIDEIDYLITKT-------------QKVLFTLFDW----------PTKINSKLVLIAISNTMDL 914 (1164)
T ss_pred Hhhhh--cccccceEEEeehHhhhCccH-------------HHHHHHHHHH----------hhccCCeEEEEEecCchhc
Confidence 44320 013446799999999987541 1345555551 1123467899999997
Q ss_pred CCCCChhhhcCCCceEEEe-CCCHHHHHHHHHHhccC
Q 012383 278 FSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRN 313 (465)
Q Consensus 278 ~~~LD~ALlR~GRfd~~i~-~P~~e~R~~Il~~~l~~ 313 (465)
++.|++.+..+.+..++.+ +++.+++.+||+.-+..
T Consensus 915 perLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~ 951 (1164)
T PTZ00112 915 PERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLEN 951 (1164)
T ss_pred chhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHh
Confidence 4567787776444444555 99999999999877653
No 98
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.26 E-value=5.5e-11 Score=126.72 Aligned_cols=195 Identities=14% Similarity=0.168 Sum_probs=117.3
Q ss_pred ccccccccccCCCCCchhHHHHHHHHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHh-----CCceEEecccc
Q 012383 110 LRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGE 184 (465)
Q Consensus 110 ~r~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~el-----g~~~i~vs~s~ 184 (465)
+..|+|+|.+.+. . .+.+...++.+...++. ....++|||++|||||+|++++++++ +..++++++.+
T Consensus 109 l~~~tFdnFv~g~----~--n~~A~~aa~~~a~~~~~-~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~ 181 (450)
T PRK14087 109 INENTFENFVIGS----S--NEQAFIAVQTVSKNPGI-SYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDE 181 (450)
T ss_pred ccccchhcccCCC----c--HHHHHHHHHHHHhCcCc-ccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHH
Confidence 3357888876542 1 12344556666655553 23569999999999999999999964 46788888887
Q ss_pred cccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccC
Q 012383 185 LESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE 264 (465)
Q Consensus 185 L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~ 264 (465)
+...+...-.... ..+....+ +.....+|+|||++.+.++.. .+..|+.+++ ..
T Consensus 182 f~~~~~~~l~~~~-~~~~~~~~--~~~~~dvLiIDDiq~l~~k~~-----------~~e~lf~l~N--------~~---- 235 (450)
T PRK14087 182 FARKAVDILQKTH-KEIEQFKN--EICQNDVLIIDDVQFLSYKEK-----------TNEIFFTIFN--------NF---- 235 (450)
T ss_pred HHHHHHHHHHHhh-hHHHHHHH--HhccCCEEEEeccccccCCHH-----------HHHHHHHHHH--------HH----
Confidence 7644332111100 11111100 134567999999998765421 1223333333 11
Q ss_pred CCCCceEEEEeCCCC----CCChhhhcCCCce--EEEe--CCCHHHHHHHHHHhccCCC----CChhHHHHHhcCCCchh
Q 012383 265 ENPRVPIIVTGNDFS----TLYAPLIRDGRME--KFYW--APTREDRIGVCKGIFRNDN----VADDDIVKLVDTFPGQS 332 (465)
Q Consensus 265 ~~~~V~VI~TTN~~~----~LD~ALlR~GRfd--~~i~--~P~~e~R~~Il~~~l~~~~----v~~~~la~lt~gfsgad 332 (465)
...+..+|+|+|.+- .+++.|.. ||. ..+. .|+.++|.+|++..+...+ ++.+.+.-++..++|.-
T Consensus 236 ~~~~k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~ 313 (450)
T PRK14087 236 IENDKQLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDV 313 (450)
T ss_pred HHcCCcEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCH
Confidence 112236888888653 35677765 554 3333 9999999999998887643 56666666666666543
Q ss_pred hHHHHHH
Q 012383 333 IDFFGAL 339 (465)
Q Consensus 333 ld~~~al 339 (465)
=...++|
T Consensus 314 R~L~gaL 320 (450)
T PRK14087 314 RKIKGSV 320 (450)
T ss_pred HHHHHHH
Confidence 3333443
No 99
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.26 E-value=1.4e-10 Score=127.82 Aligned_cols=159 Identities=14% Similarity=0.197 Sum_probs=104.8
Q ss_pred ccccccCCCCCchhHHHHHHHHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCce----------------
Q 012383 114 NLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINP---------------- 177 (465)
Q Consensus 114 ~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~---------------- 177 (465)
+|+.++|. ..++...++.+... +.+..+|||||||||||++|+++|+.+++..
T Consensus 14 ~f~divGQ---------e~vv~~L~~~l~~~--rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i 82 (647)
T PRK07994 14 TFAEVVGQ---------EHVLTALANALDLG--RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREI 82 (647)
T ss_pred CHHHhcCc---------HHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHH
Confidence 55777776 33334445555433 4678899999999999999999999987631
Q ss_pred --------EEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhh
Q 012383 178 --------IMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIA 249 (465)
Q Consensus 178 --------i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~ll 249 (465)
+.+++.. . .....+|++.+.+...-..+...|+||||+|.+.. .....|+..+
T Consensus 83 ~~g~~~D~ieidaas----~--~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~-------------~a~NALLKtL 143 (647)
T PRK07994 83 EQGRFVDLIEIDAAS----R--TKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSR-------------HSFNALLKTL 143 (647)
T ss_pred HcCCCCCceeecccc----c--CCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCH-------------HHHHHHHHHH
Confidence 2222210 0 12344666655541111245678999999987632 1223455555
Q ss_pred cCCccccCCCccccCCCCCceEEEEeCCCCCCChhhhcCCCceEEEe-CCCHHHHHHHHHHhccCCCCC
Q 012383 250 DNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVA 317 (465)
Q Consensus 250 D~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~-~P~~e~R~~Il~~~l~~~~v~ 317 (465)
+ +....+.+|++|+++..|.+.++. |+-.+.. .++.++-...++.++...++.
T Consensus 144 E-------------EPp~~v~FIL~Tt~~~kLl~TI~S--RC~~~~f~~Ls~~ei~~~L~~il~~e~i~ 197 (647)
T PRK07994 144 E-------------EPPEHVKFLLATTDPQKLPVTILS--RCLQFHLKALDVEQIRQQLEHILQAEQIP 197 (647)
T ss_pred H-------------cCCCCeEEEEecCCccccchHHHh--hheEeeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 5 455678888889999999999886 6655545 888888888888877655544
No 100
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.26 E-value=5.8e-11 Score=102.67 Aligned_cols=127 Identities=19% Similarity=0.214 Sum_probs=78.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccc
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAG 224 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai 224 (465)
....++|+||||||||++++.+++.+ +.+++.++..+.............. .+...........+.+|+|||++.+
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~lilDe~~~~ 96 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHF-LVRLLFELAEKAKPGVLFIDEIDSL 96 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhh-hHhHHHHhhccCCCeEEEEeChhhh
Confidence 45689999999999999999999998 8889988887665433221111100 0011111113567899999999875
Q ss_pred cCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC--CCChhhhcCCCceEEEeC
Q 012383 225 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS--TLYAPLIRDGRMEKFYWA 297 (465)
Q Consensus 225 ~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~--~LD~ALlR~GRfd~~i~~ 297 (465)
... ....++.++. .+... .....++.+|++||... .+++.+.. ||+..+.+
T Consensus 97 ~~~-------------~~~~~~~~i~-----~~~~~--~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~ 149 (151)
T cd00009 97 SRG-------------AQNALLRVLE-----TLNDL--RIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVI 149 (151)
T ss_pred hHH-------------HHHHHHHHHH-----hcCce--eccCCCeEEEEecCccccCCcChhHHh--hhccEeec
Confidence 111 1112222222 00000 01246789999999888 67777764 88766653
No 101
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.25 E-value=3.6e-11 Score=120.38 Aligned_cols=166 Identities=19% Similarity=0.290 Sum_probs=103.7
Q ss_pred HHHHHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCc------eEEecccccccCCCCChHHHHHHH---H
Q 012383 131 KLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN------PIMMSAGELESGNAGEPAKLIRQR---Y 201 (465)
Q Consensus 131 ~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~------~i~vs~s~L~s~~~Ge~~k~Ir~~---F 201 (465)
..++.+.++-+...+. ..+|||||||||||+.|++.|.++..+ +...+++.-. |-+ .+|.- |
T Consensus 42 e~vV~~L~~a~~~~~l---p~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSder----Gis--vvr~Kik~f 112 (346)
T KOG0989|consen 42 EHVVQVLKNALLRRIL---PHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDER----GIS--VVREKIKNF 112 (346)
T ss_pred HHHHHHHHHHHhhcCC---ceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccc----ccc--chhhhhcCH
Confidence 4556666666654222 378999999999999999999998762 1222222221 211 22222 3
Q ss_pred HHHHHHHH-----hCCc-eEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEe
Q 012383 202 REAADIIK-----KGKM-CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTG 275 (465)
Q Consensus 202 ~~A~~~i~-----~~~p-~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TT 275 (465)
.+...... -..| -|++|||.|++... .+.+|.+.++ .....+.+|..|
T Consensus 113 akl~~~~~~~~~~~~~~fKiiIlDEcdsmtsd-------------aq~aLrr~mE-------------~~s~~trFiLIc 166 (346)
T KOG0989|consen 113 AKLTVLLKRSDGYPCPPFKIIILDECDSMTSD-------------AQAALRRTME-------------DFSRTTRFILIC 166 (346)
T ss_pred HHHhhccccccCCCCCcceEEEEechhhhhHH-------------HHHHHHHHHh-------------ccccceEEEEEc
Confidence 33211111 1122 69999999986532 3355666666 334567899999
Q ss_pred CCCCCCChhhhcCCCceEEEe-CCCHHHHHHHHHHhccCCCCChh-HHHHHhcCCCchhh
Q 012383 276 NDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVADD-DIVKLVDTFPGQSI 333 (465)
Q Consensus 276 N~~~~LD~ALlR~GRfd~~i~-~P~~e~R~~Il~~~l~~~~v~~~-~la~lt~gfsgadl 333 (465)
|..+.|+.++.. |+.++.+ .-..+.....|+.+..+++++.+ +..++....|+.||
T Consensus 167 nylsrii~pi~S--RC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 167 NYLSRIIRPLVS--RCQKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDL 224 (346)
T ss_pred CChhhCChHHHh--hHHHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcH
Confidence 999999999986 8999888 44455566667777777766644 33334444555554
No 102
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.25 E-value=7.4e-11 Score=130.16 Aligned_cols=175 Identities=14% Similarity=0.193 Sum_probs=110.1
Q ss_pred ccccccCCCCCchhHHHHHHHHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEE-------------e
Q 012383 114 NLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM-------------M 180 (465)
Q Consensus 114 ~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~-------------v 180 (465)
+|+.++|. ..++...++++... +.|.++||+||||||||++|+++|+++++.-.. +
T Consensus 14 tFddIIGQ---------e~vv~~L~~ai~~~--rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i 82 (709)
T PRK08691 14 TFADLVGQ---------EHVVKALQNALDEG--RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQI 82 (709)
T ss_pred CHHHHcCc---------HHHHHHHHHHHHcC--CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHH
Confidence 45666666 33444555555533 568899999999999999999999997653110 0
Q ss_pred ccc---ccc--cCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccc
Q 012383 181 SAG---ELE--SGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCV 255 (465)
Q Consensus 181 s~s---~L~--s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v 255 (465)
..+ +++ +...+.+...||+++..+...-..+...||||||+|.+.. .. ...|+..++
T Consensus 83 ~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~------------~A-~NALLKtLE----- 144 (709)
T PRK08691 83 DAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSK------------SA-FNAMLKTLE----- 144 (709)
T ss_pred hccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCH------------HH-HHHHHHHHH-----
Confidence 000 110 1111223456777776541111135668999999986531 11 223445555
Q ss_pred cCCCccccCCCCCceEEEEeCCCCCCChhhhcCCCceEEEe-CCCHHHHHHHHHHhccCCCCC--hhHHHHHhcC
Q 012383 256 QLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVA--DDDIVKLVDT 327 (465)
Q Consensus 256 ~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~-~P~~e~R~~Il~~~l~~~~v~--~~~la~lt~g 327 (465)
+....+.+|++||++..+.+.++ +|+-++-. .++.++....++.++...++. .+.+..+...
T Consensus 145 --------EPp~~v~fILaTtd~~kL~~TIr--SRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~ 209 (709)
T PRK08691 145 --------EPPEHVKFILATTDPHKVPVTVL--SRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRA 209 (709)
T ss_pred --------hCCCCcEEEEEeCCccccchHHH--HHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Confidence 33466788999999999999987 47755444 888999899998888877654 4444444433
No 103
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.24 E-value=2e-10 Score=123.91 Aligned_cols=162 Identities=13% Similarity=0.176 Sum_probs=100.7
Q ss_pred HHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEec------------c--------ccccc--CCCC
Q 012383 134 VHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS------------A--------GELES--GNAG 191 (465)
Q Consensus 134 ~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs------------~--------s~L~s--~~~G 191 (465)
+...++.+.. -+.|.++||+||||||||++|+++|+++++.-.... + .++.. .-..
T Consensus 30 v~~L~~ai~~--~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~eidaas~ 107 (507)
T PRK06645 30 VKVLSYTILN--DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPDIIEIDAASK 107 (507)
T ss_pred HHHHHHHHHc--CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCcEEEeeccCC
Confidence 3344444333 356789999999999999999999999876321000 0 01110 0011
Q ss_pred ChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceE
Q 012383 192 EPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI 271 (465)
Q Consensus 192 e~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~V 271 (465)
.+...++.+...+...--.+...|+||||+|.+.. .. ...|+..++ +....+.+
T Consensus 108 ~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~------------~a-~naLLk~LE-------------epp~~~vf 161 (507)
T PRK06645 108 TSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK------------GA-FNALLKTLE-------------EPPPHIIF 161 (507)
T ss_pred CCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH------------HH-HHHHHHHHh-------------hcCCCEEE
Confidence 23456777776662111145567999999987631 11 223444444 33456778
Q ss_pred EEEeCCCCCCChhhhcCCCceEEEe-CCCHHHHHHHHHHhccCCCC--ChhHHHHHh
Q 012383 272 IVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNV--ADDDIVKLV 325 (465)
Q Consensus 272 I~TTN~~~~LD~ALlR~GRfd~~i~-~P~~e~R~~Il~~~l~~~~v--~~~~la~lt 325 (465)
|++|+.++.++++++. |+.++-. .++.++...+++.+++..++ +.+.+..++
T Consensus 162 I~aTte~~kI~~tI~S--Rc~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia 216 (507)
T PRK06645 162 IFATTEVQKIPATIIS--RCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIA 216 (507)
T ss_pred EEEeCChHHhhHHHHh--cceEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 8888899999999886 5544333 88999999999988877654 444333333
No 104
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.23 E-value=9.2e-11 Score=113.08 Aligned_cols=168 Identities=17% Similarity=0.231 Sum_probs=99.4
Q ss_pred cccccccccCCCCCchhHHHHHHHHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEeccccccc
Q 012383 111 RTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELES 187 (465)
Q Consensus 111 r~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~s~L~s 187 (465)
+.++|++..++.. ......++++.. +...+..++|+||||||||+||+++++++ +..++.+++..+..
T Consensus 13 ~~~~~d~f~~~~~-------~~~~~~l~~~~~--~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~ 83 (227)
T PRK08903 13 PPPTFDNFVAGEN-------AELVARLRELAA--GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLL 83 (227)
T ss_pred ChhhhcccccCCc-------HHHHHHHHHHHh--ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHH
Confidence 3466777653311 223444555544 33456789999999999999999999985 66777887765431
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCC
Q 012383 188 GNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP 267 (465)
Q Consensus 188 ~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~ 267 (465)
.+. ......+|+|||+|.+.... +..|+.+++ .. ....
T Consensus 84 ------------~~~------~~~~~~~liiDdi~~l~~~~-------------~~~L~~~~~--------~~---~~~~ 121 (227)
T PRK08903 84 ------------AFD------FDPEAELYAVDDVERLDDAQ-------------QIALFNLFN--------RV---RAHG 121 (227)
T ss_pred ------------HHh------hcccCCEEEEeChhhcCchH-------------HHHHHHHHH--------HH---HHcC
Confidence 111 12346799999999763211 123334443 11 1123
Q ss_pred CceEEEEeCCCC---CCChhhhcCCCc--eEEEe--CCCHHHHHHHHHHhccCC--CCChhHHHHHhcCCCch
Q 012383 268 RVPIIVTGNDFS---TLYAPLIRDGRM--EKFYW--APTREDRIGVCKGIFRND--NVADDDIVKLVDTFPGQ 331 (465)
Q Consensus 268 ~V~VI~TTN~~~---~LD~ALlR~GRf--d~~i~--~P~~e~R~~Il~~~l~~~--~v~~~~la~lt~gfsga 331 (465)
...+|.|++.+. .+.+.|.. || ...+. .|+.+++..++..+.... .++.+.+..+...++|.
T Consensus 122 ~~~vl~~~~~~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~gn 192 (227)
T PRK08903 122 QGALLVAGPAAPLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRRD 192 (227)
T ss_pred CcEEEEeCCCCHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCC
Confidence 334555555432 24455653 43 23444 788888888888776544 55666677777755553
No 105
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.23 E-value=1.4e-10 Score=130.39 Aligned_cols=141 Identities=16% Similarity=0.220 Sum_probs=96.3
Q ss_pred Ce-EEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccC------------CCCChHHHHHHHHHHHHHHHHhCCceE
Q 012383 149 PL-ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG------------NAGEPAKLIRQRYREAADIIKKGKMCC 215 (465)
Q Consensus 149 p~-glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~------------~~Ge~~k~Ir~~F~~A~~~i~~~~p~I 215 (465)
|. .+||+||||||||++|+++|+.++.+++.++.+++.++ |+|.... ..+..+ ++....+|
T Consensus 483 p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~~---~~l~~~---~~~~p~~V 556 (731)
T TIGR02639 483 PVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQG---GLLTEA---VRKHPHCV 556 (731)
T ss_pred CceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCcccchh---hHHHHH---HHhCCCeE
Confidence 55 47899999999999999999999999999988876432 3332111 111222 24567799
Q ss_pred EEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC----------------
Q 012383 216 LMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS---------------- 279 (465)
Q Consensus 216 LfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~---------------- 279 (465)
|||||||++. ..+...|++++|+-... ++........+++||+|||...
T Consensus 557 vllDEieka~-------------~~~~~~Ll~~ld~g~~~--d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~ 621 (731)
T TIGR02639 557 LLLDEIEKAH-------------PDIYNILLQVMDYATLT--DNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVE 621 (731)
T ss_pred EEEechhhcC-------------HHHHHHHHHhhccCeee--cCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhH
Confidence 9999998653 23456788888843211 1111123446789999998742
Q ss_pred ---------CCChhhhcCCCceEEEe--CCCHHHHHHHHHHhcc
Q 012383 280 ---------TLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFR 312 (465)
Q Consensus 280 ---------~LD~ALlR~GRfd~~i~--~P~~e~R~~Il~~~l~ 312 (465)
.+.|+|+ +|+|.++. ..+.++..+|++..+.
T Consensus 622 ~~~~~~~~~~f~pef~--~Rid~Vi~F~pLs~e~l~~Iv~~~L~ 663 (731)
T TIGR02639 622 SKSDKAIKKLFSPEFR--NRLDAIIHFNPLSEEVLEKIVQKFVD 663 (731)
T ss_pred HHHHHHHHhhcChHHH--hcCCeEEEcCCCCHHHHHHHHHHHHH
Confidence 2466666 59987776 7788999999877663
No 106
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=3.6e-11 Score=120.84 Aligned_cols=102 Identities=21% Similarity=0.304 Sum_probs=80.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhCCceEEeccccc-ccCCCCChHHHHHHHHHHHHHH-HHhCCceEEEecccccccCC
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL-ESGNAGEPAKLIRQRYREAADI-IKKGKMCCLMINDLDAGAGR 227 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L-~s~~~Ge~~k~Ir~~F~~A~~~-i~~~~p~ILfIDEIDai~~~ 227 (465)
..|||.||.|||||+||+.+|+.+++||-+.++..| ..+|+||...+|-..+-+|++. ..+....||+|||||+++++
T Consensus 98 SNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIark 177 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARK 177 (408)
T ss_pred ccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhcc
Confidence 479999999999999999999999999999999988 6789999876654444433221 22556789999999999887
Q ss_pred CCCC-cccchhhHHHHHHHHHhhcC
Q 012383 228 MGGT-TQYTVNNQMVNATLMNIADN 251 (465)
Q Consensus 228 r~~~-~~~~v~~~~v~~~Ll~llD~ 251 (465)
.... -...|...-+++.|+.++..
T Consensus 178 SeN~SITRDVSGEGVQQALLKiiEG 202 (408)
T COG1219 178 SENPSITRDVSGEGVQQALLKIIEG 202 (408)
T ss_pred CCCCCcccccCchHHHHHHHHHHcC
Confidence 5421 23567778899999999985
No 107
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.23 E-value=8.3e-11 Score=127.08 Aligned_cols=168 Identities=15% Similarity=0.208 Sum_probs=105.8
Q ss_pred ccccccCCCCCchhHHHHHHHHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCc-----------------
Q 012383 114 NLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN----------------- 176 (465)
Q Consensus 114 ~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~----------------- 176 (465)
+|+.++|. ..++...++++... +.|..+|||||||||||++|+++|+.+++.
T Consensus 14 ~f~divGq---------~~v~~~L~~~~~~~--~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i 82 (509)
T PRK14958 14 CFQEVIGQ---------APVVRALSNALDQQ--YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREI 82 (509)
T ss_pred CHHHhcCC---------HHHHHHHHHHHHhC--CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHH
Confidence 55777777 33444455555433 557889999999999999999999998653
Q ss_pred -------eEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhh
Q 012383 177 -------PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIA 249 (465)
Q Consensus 177 -------~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~ll 249 (465)
++.++++. ......+|++...+.-.-..++..|+||||+|.+... ..+.|+..+
T Consensus 83 ~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~-------------a~naLLk~L 143 (509)
T PRK14958 83 DEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGH-------------SFNALLKTL 143 (509)
T ss_pred hcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHH-------------HHHHHHHHH
Confidence 23333221 1223345665554411111455679999999976421 123455555
Q ss_pred cCCccccCCCccccCCCCCceEEEEeCCCCCCChhhhcCCCceEEEe-CCCHHHHHHHHHHhccCCCCC--hhHHHHHhc
Q 012383 250 DNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVA--DDDIVKLVD 326 (465)
Q Consensus 250 D~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~-~P~~e~R~~Il~~~l~~~~v~--~~~la~lt~ 326 (465)
+ +....+.+|++|++++.+.+.++. |+..+-. .++.++-...++.++...++. .+.+..++.
T Consensus 144 E-------------epp~~~~fIlattd~~kl~~tI~S--Rc~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~ 208 (509)
T PRK14958 144 E-------------EPPSHVKFILATTDHHKLPVTVLS--RCLQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLAR 208 (509)
T ss_pred h-------------ccCCCeEEEEEECChHhchHHHHH--HhhhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 5 334567888888999999999876 5544434 667777777777777666554 334434333
No 108
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.22 E-value=3.8e-10 Score=123.53 Aligned_cols=158 Identities=9% Similarity=0.120 Sum_probs=103.1
Q ss_pred ccccccCCCCCchhHHHHHHHHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCc-----------------
Q 012383 114 NLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN----------------- 176 (465)
Q Consensus 114 ~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~----------------- 176 (465)
+|+.++|. +.+....++++... +.|..+|||||+|||||++|+++|+.+.+.
T Consensus 11 ~f~eivGq---------~~i~~~L~~~i~~~--r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i 79 (584)
T PRK14952 11 TFAEVVGQ---------EHVTEPLSSALDAG--RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVAL 79 (584)
T ss_pred cHHHhcCc---------HHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHh
Confidence 55777776 44455556666543 567889999999999999999999997642
Q ss_pred ---------eEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHH
Q 012383 177 ---------PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMN 247 (465)
Q Consensus 177 ---------~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~ 247 (465)
++.++++. ......+|++-..+...-..+...|+||||+|.+... ..+.|+.
T Consensus 80 ~~~~~~~~dvieidaas------~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~-------------A~NALLK 140 (584)
T PRK14952 80 APNGPGSIDVVELDAAS------HGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTA-------------GFNALLK 140 (584)
T ss_pred hcccCCCceEEEecccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHH-------------HHHHHHH
Confidence 11121110 0123455555444411111456679999999876321 2234555
Q ss_pred hhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhhcCCCceEEEe-CCCHHHHHHHHHHhccCCCC
Q 012383 248 IADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNV 316 (465)
Q Consensus 248 llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~-~P~~e~R~~Il~~~l~~~~v 316 (465)
.+. +....+.+|++|+.++.|.++++. |+.++-. .++.++..+.+..++...++
T Consensus 141 ~LE-------------Epp~~~~fIL~tte~~kll~TI~S--Rc~~~~F~~l~~~~i~~~L~~i~~~egi 195 (584)
T PRK14952 141 IVE-------------EPPEHLIFIFATTEPEKVLPTIRS--RTHHYPFRLLPPRTMRALIARICEQEGV 195 (584)
T ss_pred HHh-------------cCCCCeEEEEEeCChHhhHHHHHH--hceEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence 555 345677888888999999999876 5544444 77888888888887776654
No 109
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.21 E-value=2.2e-10 Score=118.40 Aligned_cols=180 Identities=13% Similarity=0.167 Sum_probs=106.6
Q ss_pred ccccccCCCCCchhHHHHHHHHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEec-------ccccc
Q 012383 114 NLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS-------AGELE 186 (465)
Q Consensus 114 ~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs-------~s~L~ 186 (465)
+|+.+.|. +.+....++.+... +.|..+|||||||+|||++|+++|+.+........ .-++
T Consensus 15 ~~~~iig~---------~~~~~~l~~~i~~~--~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l- 82 (367)
T PRK14970 15 TFDDVVGQ---------SHITNTLLNAIENN--HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFEL- 82 (367)
T ss_pred cHHhcCCc---------HHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEe-
Confidence 45666666 22333344444432 45789999999999999999999999765211100 0011
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCC
Q 012383 187 SGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEEN 266 (465)
Q Consensus 187 s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~ 266 (465)
+.........++.++..+...-....+.||||||+|.+... .. ..|+..++ ...
T Consensus 83 ~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~------------~~-~~ll~~le-------------~~~ 136 (367)
T PRK14970 83 DAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSA------------AF-NAFLKTLE-------------EPP 136 (367)
T ss_pred ccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHH------------HH-HHHHHHHh-------------CCC
Confidence 11111223566777776511111345679999999865321 12 23444444 223
Q ss_pred CCceEEEEeCCCCCCChhhhcCCCceEEEe-CCCHHHHHHHHHHhccCCC--CChhHHHHHhcCCCchhhH
Q 012383 267 PRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDN--VADDDIVKLVDTFPGQSID 334 (465)
Q Consensus 267 ~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~-~P~~e~R~~Il~~~l~~~~--v~~~~la~lt~gfsgadld 334 (465)
....+|++||....+.+++.++++ .+-. .|+.++...++...+...+ ++.+.+..++.. ++.|+.
T Consensus 137 ~~~~~Il~~~~~~kl~~~l~sr~~--~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~-~~gdlr 204 (367)
T PRK14970 137 AHAIFILATTEKHKIIPTILSRCQ--IFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQK-ADGALR 204 (367)
T ss_pred CceEEEEEeCCcccCCHHHHhcce--eEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh-CCCCHH
Confidence 345677788888999999887443 3222 7888998888888777665 455555554443 333443
No 110
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.21 E-value=4.5e-11 Score=121.98 Aligned_cols=143 Identities=15% Similarity=0.109 Sum_probs=97.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccC--CCCChHHH----------HHHHHHHHHHHHHhCCceEE
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG--NAGEPAKL----------IRQRYREAADIIKKGKMCCL 216 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~--~~Ge~~k~----------Ir~~F~~A~~~i~~~~p~IL 216 (465)
.+.|||.||||||||++++.+|++++++++.+++....+. ++|...-. ....+-.| ...+++|
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A-----~~~g~il 138 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWA-----LQHNVAL 138 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhH-----HhCCeEE
Confidence 4689999999999999999999999999999887766555 45543211 11223333 2457899
Q ss_pred EecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCcccc-CCCCCceEEEEeCCCC------------CCCh
Q 012383 217 MINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNK-EENPRVPIIVTGNDFS------------TLYA 283 (465)
Q Consensus 217 fIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~-~~~~~V~VI~TTN~~~------------~LD~ 283 (465)
++||||..-+ .+...|..+|+....+.+++.... ...+...||+|+|..+ .|++
T Consensus 139 llDEin~a~p-------------~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~ 205 (327)
T TIGR01650 139 CFDEYDAGRP-------------DVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQ 205 (327)
T ss_pred EechhhccCH-------------HHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCH
Confidence 9999996522 123445556664333334332222 2345778999999865 4678
Q ss_pred hhhcCCCceEEEe--CCCHHHHHHHHHHhc
Q 012383 284 PLIRDGRMEKFYW--APTREDRIGVCKGIF 311 (465)
Q Consensus 284 ALlR~GRfd~~i~--~P~~e~R~~Il~~~l 311 (465)
|++- ||-..+. .|+.++-.+|+....
T Consensus 206 A~lD--RF~i~~~~~Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 206 AQMD--RWSIVTTLNYLEHDNEAAIVLAKA 233 (327)
T ss_pred HHHh--heeeEeeCCCCCHHHHHHHHHhhc
Confidence 8875 8876654 889999899987664
No 111
>PRK08727 hypothetical protein; Validated
Probab=99.21 E-value=5.5e-10 Score=109.00 Aligned_cols=142 Identities=14% Similarity=0.109 Sum_probs=90.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh---CCceEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccC
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAG 226 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~ 226 (465)
..++||||+|||||+|+.++++++ |...++++..++. ..+.+.++. .....+|+|||++.+.+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~------l~~~dlLiIDDi~~l~~ 107 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA--------GRLRDALEA------LEGRSLVALDGLESIAG 107 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh--------hhHHHHHHH------HhcCCEEEEeCcccccC
Confidence 459999999999999999998773 5566666654433 112222222 23456999999998765
Q ss_pred CCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCC-CCCC---ChhhhcCCCc--eEEEe--CC
Q 012383 227 RMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND-FSTL---YAPLIRDGRM--EKFYW--AP 298 (465)
Q Consensus 227 ~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~-~~~L---D~ALlR~GRf--d~~i~--~P 298 (465)
... . +..++++++ .. ...+..||+|+|. |..+ +++|.+ || -..+. .|
T Consensus 108 ~~~--~---------~~~lf~l~n--------~~----~~~~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~ 162 (233)
T PRK08727 108 QRE--D---------EVALFDFHN--------RA----RAAGITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVL 162 (233)
T ss_pred ChH--H---------HHHHHHHHH--------HH----HHcCCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCC
Confidence 432 1 123334444 11 1134568888875 4444 688886 53 22333 89
Q ss_pred CHHHHHHHHHHhccC--CCCChhHHHHHhcCCCc
Q 012383 299 TREDRIGVCKGIFRN--DNVADDDIVKLVDTFPG 330 (465)
Q Consensus 299 ~~e~R~~Il~~~l~~--~~v~~~~la~lt~gfsg 330 (465)
+.++|.+|++.+... ..++.+.+.-++..+.|
T Consensus 163 ~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~r 196 (233)
T PRK08727 163 DDVARAAVLRERAQRRGLALDEAAIDWLLTHGER 196 (233)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC
Confidence 999999999986644 35666666666666554
No 112
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.21 E-value=2.5e-10 Score=123.95 Aligned_cols=159 Identities=13% Similarity=0.162 Sum_probs=100.0
Q ss_pred ccccccCCCCCchhHHHHHHHHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCc-----------------
Q 012383 114 NLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN----------------- 176 (465)
Q Consensus 114 ~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~----------------- 176 (465)
+|+.++|. ..++...++.+.. -+.|..+|||||||||||++|+++|+.+.+.
T Consensus 14 ~f~diiGq---------~~~v~~L~~~i~~--~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i 82 (546)
T PRK14957 14 SFAEVAGQ---------QHALNSLVHALET--QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAI 82 (546)
T ss_pred cHHHhcCc---------HHHHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHH
Confidence 45666666 2222333344432 2567889999999999999999999987652
Q ss_pred -------eEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhh
Q 012383 177 -------PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIA 249 (465)
Q Consensus 177 -------~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~ll 249 (465)
++.+++. ... ....++.+...+...-..+...|+||||+|.+.. .....|+..+
T Consensus 83 ~~~~~~dlieidaa----s~~--gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~-------------~a~naLLK~L 143 (546)
T PRK14957 83 NNNSFIDLIEIDAA----SRT--GVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSK-------------QSFNALLKTL 143 (546)
T ss_pred hcCCCCceEEeecc----ccc--CHHHHHHHHHHHHhhhhcCCcEEEEEechhhccH-------------HHHHHHHHHH
Confidence 1222111 111 1234556665542222245678999999986532 1223455555
Q ss_pred cCCccccCCCccccCCCCCceEEEEeCCCCCCChhhhcCCCceEEEe-CCCHHHHHHHHHHhccCCCCC
Q 012383 250 DNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVA 317 (465)
Q Consensus 250 D~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~-~P~~e~R~~Il~~~l~~~~v~ 317 (465)
+ +....+.+|++|+++..+.++++. |+..+-. .++.++....++..+...++.
T Consensus 144 E-------------epp~~v~fIL~Ttd~~kil~tI~S--Rc~~~~f~~Ls~~eI~~~L~~il~~egi~ 197 (546)
T PRK14957 144 E-------------EPPEYVKFILATTDYHKIPVTILS--RCIQLHLKHISQADIKDQLKIILAKENIN 197 (546)
T ss_pred h-------------cCCCCceEEEEECChhhhhhhHHH--heeeEEeCCCCHHHHHHHHHHHHHHcCCC
Confidence 5 334567778888889999988775 6655444 788888888888777665543
No 113
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.20 E-value=2.5e-10 Score=124.79 Aligned_cols=158 Identities=15% Similarity=0.197 Sum_probs=104.3
Q ss_pred ccccccCCCCCchhHHHHHHHHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCc-----------------
Q 012383 114 NLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN----------------- 176 (465)
Q Consensus 114 ~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~----------------- 176 (465)
+|+.++|..+ +....++.+.. -+.+..+|||||+|||||++|+.+|+++.+.
T Consensus 14 ~f~~viGq~~---------v~~~L~~~i~~--~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i 82 (559)
T PRK05563 14 TFEDVVGQEH---------ITKTLKNAIKQ--GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAI 82 (559)
T ss_pred cHHhccCcHH---------HHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHH
Confidence 5677777733 33334444443 2457899999999999999999999997542
Q ss_pred -------eEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhh
Q 012383 177 -------PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIA 249 (465)
Q Consensus 177 -------~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~ll 249 (465)
++.++++ .+.....||++...+...-..+...|+||||+|.+... ....|+..+
T Consensus 83 ~~g~~~dv~eidaa------s~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~-------------a~naLLKtL 143 (559)
T PRK05563 83 TNGSLMDVIEIDAA------SNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTG-------------AFNALLKTL 143 (559)
T ss_pred hcCCCCCeEEeecc------ccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHH-------------HHHHHHHHh
Confidence 2223221 12345567777776521111455679999999876321 122444455
Q ss_pred cCCccccCCCccccCCCCCceEEEEeCCCCCCChhhhcCCCceEEEe-CCCHHHHHHHHHHhccCCCC
Q 012383 250 DNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNV 316 (465)
Q Consensus 250 D~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~-~P~~e~R~~Il~~~l~~~~v 316 (465)
+ +....+.+|++|+.++.|++.+++ |+.++-. .|+.++...+++.++...++
T Consensus 144 E-------------epp~~~ifIlatt~~~ki~~tI~S--Rc~~~~f~~~~~~ei~~~L~~i~~~egi 196 (559)
T PRK05563 144 E-------------EPPAHVIFILATTEPHKIPATILS--RCQRFDFKRISVEDIVERLKYILDKEGI 196 (559)
T ss_pred c-------------CCCCCeEEEEEeCChhhCcHHHHh--HheEEecCCCCHHHHHHHHHHHHHHcCC
Confidence 5 334567777788889999999876 6655545 88899988888888876654
No 114
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.20 E-value=1.1e-10 Score=99.61 Aligned_cols=125 Identities=18% Similarity=0.206 Sum_probs=79.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHhCCc---eEEecccccccC--------------CCCChHHHHHHHHHHHHHHHHhC
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKMGIN---PIMMSAGELESG--------------NAGEPAKLIRQRYREAADIIKKG 211 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~elg~~---~i~vs~s~L~s~--------------~~Ge~~k~Ir~~F~~A~~~i~~~ 211 (465)
+..++|+||||||||++++.+|..+... ++.++.+..... ........++..+..+ +..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 77 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALA----RKL 77 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHH----Hhc
Confidence 4689999999999999999999998875 777777754332 2234455566666666 666
Q ss_pred CceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhhcCCCc
Q 012383 212 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 291 (465)
Q Consensus 212 ~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRf 291 (465)
.+.||||||++.+..... . ....... . ...........+..+|+++|......+..+++ |+
T Consensus 78 ~~~viiiDei~~~~~~~~---~-----~~~~~~~----~------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~ 138 (148)
T smart00382 78 KPDVLILDEITSLLDAEQ---E-----ALLLLLE----E------LRLLLLLKSEKNLTVILTTNDEKDLGPALLRR-RF 138 (148)
T ss_pred CCCEEEEECCcccCCHHH---H-----HHHHhhh----h------hHHHHHHHhcCCCEEEEEeCCCccCchhhhhh-cc
Confidence 689999999988765432 0 0000000 0 00000112346678999999744444444444 77
Q ss_pred eEEEe
Q 012383 292 EKFYW 296 (465)
Q Consensus 292 d~~i~ 296 (465)
+..+.
T Consensus 139 ~~~~~ 143 (148)
T smart00382 139 DRRIV 143 (148)
T ss_pred ceEEE
Confidence 77665
No 115
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.20 E-value=2.2e-10 Score=128.21 Aligned_cols=144 Identities=19% Similarity=0.236 Sum_probs=94.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCChHHHHHHHHHHHHHHHH-hCCceEEEecccccccCCC
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRM 228 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~-~~~p~ILfIDEIDai~~~r 228 (465)
..++||||||||||++|+++|+.++.+|+.+++... ..+.++..+..+.+.+. .....||||||||.+...
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~-------~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~- 124 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA-------GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKA- 124 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh-------hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHH-
Confidence 378999999999999999999999999988876521 12345566665533333 345789999999875321
Q ss_pred CCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEe--CCCCCCChhhhcCCCceEEEe-CCCHHHHHH
Q 012383 229 GGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYW-APTREDRIG 305 (465)
Q Consensus 229 ~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TT--N~~~~LD~ALlR~GRfd~~i~-~P~~e~R~~ 305 (465)
.+..|+..++ ...+.+|++| |....++++++++++ .+.. .++.+++..
T Consensus 125 ------------qQdaLL~~lE---------------~g~IiLI~aTTenp~~~l~~aL~SR~~--v~~l~pLs~edi~~ 175 (725)
T PRK13341 125 ------------QQDALLPWVE---------------NGTITLIGATTENPYFEVNKALVSRSR--LFRLKSLSDEDLHQ 175 (725)
T ss_pred ------------HHHHHHHHhc---------------CceEEEEEecCCChHhhhhhHhhcccc--ceecCCCCHHHHHH
Confidence 1223433333 2346666655 334568899987443 3323 888999999
Q ss_pred HHHHhcc-------CC--CCChhHHHHHhcCCCc
Q 012383 306 VCKGIFR-------ND--NVADDDIVKLVDTFPG 330 (465)
Q Consensus 306 Il~~~l~-------~~--~v~~~~la~lt~gfsg 330 (465)
|++.++. .. .++.+.+..++...+|
T Consensus 176 IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G 209 (725)
T PRK13341 176 LLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG 209 (725)
T ss_pred HHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC
Confidence 9888775 22 4556666666655443
No 116
>PRK06620 hypothetical protein; Validated
Probab=99.20 E-value=1.2e-10 Score=112.39 Aligned_cols=162 Identities=17% Similarity=0.169 Sum_probs=93.8
Q ss_pred cccccccccCCCCCchhHHHHHHHHHHHhhhhCCCCCC-CeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCC
Q 012383 111 RTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKV-PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN 189 (465)
Q Consensus 111 r~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~-p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~ 189 (465)
..|+|++.+.+. . ...+...++++...++..+ -..++||||||||||+|++++++..+..++. ....
T Consensus 11 ~~~tfd~Fvvg~-----~-N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~---- 78 (214)
T PRK06620 11 SKYHPDEFIVSS-----S-NDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF---- 78 (214)
T ss_pred CCCCchhhEecc-----c-HHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh----
Confidence 345677765541 1 1234555555554334333 1689999999999999999999988753222 1100
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCc
Q 012383 190 AGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRV 269 (465)
Q Consensus 190 ~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V 269 (465)
....+ ....+|+||||+.+ + .. .|+.+++ .. .+.++.
T Consensus 79 -------~~~~~---------~~~d~lliDdi~~~--------~----~~----~lf~l~N--------~~---~e~g~~ 115 (214)
T PRK06620 79 -------NEEIL---------EKYNAFIIEDIENW--------Q----EP----ALLHIFN--------II---NEKQKY 115 (214)
T ss_pred -------chhHH---------hcCCEEEEeccccc--------h----HH----HHHHHHH--------HH---HhcCCE
Confidence 00111 12368999999832 1 11 2333333 11 122344
Q ss_pred eEEEEeCCCCC--CChhhhcCCCce----EEEeCCCHHHHHHHHHHhccCC--CCChhHHHHHhcCCCc
Q 012383 270 PIIVTGNDFST--LYAPLIRDGRME----KFYWAPTREDRIGVCKGIFRND--NVADDDIVKLVDTFPG 330 (465)
Q Consensus 270 ~VI~TTN~~~~--LD~ALlR~GRfd----~~i~~P~~e~R~~Il~~~l~~~--~v~~~~la~lt~gfsg 330 (465)
+||.++..|.. + ++|+. |+. ..+..|+.+.+..+++..+... .++.+.+.-++..+++
T Consensus 116 ilits~~~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~ 181 (214)
T PRK06620 116 LLLTSSDKSRNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPR 181 (214)
T ss_pred EEEEcCCCccccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC
Confidence 55555555554 5 66765 776 3333999999999998887654 4556655555555554
No 117
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.20 E-value=3.5e-10 Score=122.08 Aligned_cols=159 Identities=12% Similarity=0.179 Sum_probs=100.6
Q ss_pred ccccccCCCCCchhHHHHHHHHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCc-----------------
Q 012383 114 NLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN----------------- 176 (465)
Q Consensus 114 ~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~----------------- 176 (465)
+|+.++|..+ +....++++... +.|..+|||||||||||++|+++|+.+.+.
T Consensus 12 ~~~dvvGq~~---------v~~~L~~~i~~~--~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~ 80 (504)
T PRK14963 12 TFDEVVGQEH---------VKEVLLAALRQG--RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVR 80 (504)
T ss_pred CHHHhcChHH---------HHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHh
Confidence 4466666622 233334444432 467788999999999999999999998541
Q ss_pred ------eEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhc
Q 012383 177 ------PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 250 (465)
Q Consensus 177 ------~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD 250 (465)
++.++++ .......+|++...+...--...+.||||||+|.+.. .. ...|+..++
T Consensus 81 ~~~h~dv~el~~~------~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~------------~a-~naLLk~LE 141 (504)
T PRK14963 81 RGAHPDVLEIDAA------SNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSK------------SA-FNALLKTLE 141 (504)
T ss_pred cCCCCceEEeccc------ccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCH------------HH-HHHHHHHHH
Confidence 2223322 0112345666544442111145678999999985421 11 223444444
Q ss_pred CCccccCCCccccCCCCCceEEEEeCCCCCCChhhhcCCCceEEEe-CCCHHHHHHHHHHhccCCCCC
Q 012383 251 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVA 317 (465)
Q Consensus 251 ~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~-~P~~e~R~~Il~~~l~~~~v~ 317 (465)
.....+.+|++||.+..+++++.. |+.++-. .|+.++....++.++...++.
T Consensus 142 -------------ep~~~t~~Il~t~~~~kl~~~I~S--Rc~~~~f~~ls~~el~~~L~~i~~~egi~ 194 (504)
T PRK14963 142 -------------EPPEHVIFILATTEPEKMPPTILS--RTQHFRFRRLTEEEIAGKLRRLLEAEGRE 194 (504)
T ss_pred -------------hCCCCEEEEEEcCChhhCChHHhc--ceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 234566788888999999999886 5555444 889999999988888766553
No 118
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.19 E-value=1.9e-10 Score=107.95 Aligned_cols=142 Identities=11% Similarity=0.101 Sum_probs=90.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHhCCc------------------------eEEecccccccCCCCChHHHHHHHHH
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQRYR 202 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~elg~~------------------------~i~vs~s~L~s~~~Ge~~k~Ir~~F~ 202 (465)
+.|..+|||||||+|||++|+++++++... +..+... ... -+...++.+.+
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~---~~~--~~~~~i~~i~~ 86 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPE---GQS--IKVDQVRELVE 86 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccc---cCc--CCHHHHHHHHH
Confidence 567899999999999999999999997432 1111111 001 12345666565
Q ss_pred HHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCC
Q 012383 203 EAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLY 282 (465)
Q Consensus 203 ~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD 282 (465)
.+...-..+...||||||+|.+... ....|+..++ .......+|++||.+..|+
T Consensus 87 ~~~~~~~~~~~kviiide~~~l~~~-------------~~~~Ll~~le-------------~~~~~~~~il~~~~~~~l~ 140 (188)
T TIGR00678 87 FLSRTPQESGRRVVIIEDAERMNEA-------------AANALLKTLE-------------EPPPNTLFILITPSPEKLL 140 (188)
T ss_pred HHccCcccCCeEEEEEechhhhCHH-------------HHHHHHHHhc-------------CCCCCeEEEEEECChHhCh
Confidence 5521111456789999999876321 1223445555 2334567888888889999
Q ss_pred hhhhcCCCceEEEe-CCCHHHHHHHHHHhccCCCCChhHHHHHh
Q 012383 283 APLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVADDDIVKLV 325 (465)
Q Consensus 283 ~ALlR~GRfd~~i~-~P~~e~R~~Il~~~l~~~~v~~~~la~lt 325 (465)
+++.+ |+..+.. .|+.++..+++... +++.+.+..+.
T Consensus 141 ~~i~s--r~~~~~~~~~~~~~~~~~l~~~----gi~~~~~~~i~ 178 (188)
T TIGR00678 141 PTIRS--RCQVLPFPPLSEEALLQWLIRQ----GISEEAAELLL 178 (188)
T ss_pred HHHHh--hcEEeeCCCCCHHHHHHHHHHc----CCCHHHHHHHH
Confidence 99987 5543333 88999999888776 36655444333
No 119
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.19 E-value=2.2e-10 Score=125.55 Aligned_cols=163 Identities=9% Similarity=0.132 Sum_probs=102.2
Q ss_pred ccccccCCCCCchhHHHHHHHHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCc-----------------
Q 012383 114 NLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN----------------- 176 (465)
Q Consensus 114 ~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~----------------- 176 (465)
+|+.++|. ..+....++++... +.+..+|||||||||||++|+++|+.+.+.
T Consensus 14 sf~dIiGQ---------e~v~~~L~~ai~~~--ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i 82 (624)
T PRK14959 14 TFAEVAGQ---------ETVKAILSRAAQEN--RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKV 82 (624)
T ss_pred CHHHhcCC---------HHHHHHHHHHHHcC--CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHH
Confidence 55677666 33344555555533 446799999999999999999999998753
Q ss_pred -------eEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhh
Q 012383 177 -------PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIA 249 (465)
Q Consensus 177 -------~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~ll 249 (465)
++.+++.. ......+|.+-+.+...-..+...||||||+|.+... ....|+..+
T Consensus 83 ~~g~hpDv~eId~a~------~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~-------------a~naLLk~L 143 (624)
T PRK14959 83 TQGMHVDVVEIDGAS------NRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTRE-------------AFNALLKTL 143 (624)
T ss_pred hcCCCCceEEEeccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHH-------------HHHHHHHHh
Confidence 22222210 0112334443332211112456689999999876321 123444555
Q ss_pred cCCccccCCCccccCCCCCceEEEEeCCCCCCChhhhcCCCceEEEe-CCCHHHHHHHHHHhccCCC--CChhHH
Q 012383 250 DNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDN--VADDDI 321 (465)
Q Consensus 250 D~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~-~P~~e~R~~Il~~~l~~~~--v~~~~l 321 (465)
+ +....+.+|++||.+..|.+.|++ |+..+-. .++.++...+++.++...+ ++.+.+
T Consensus 144 E-------------EP~~~~ifILaTt~~~kll~TI~S--Rcq~i~F~pLs~~eL~~~L~~il~~egi~id~eal 203 (624)
T PRK14959 144 E-------------EPPARVTFVLATTEPHKFPVTIVS--RCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAV 203 (624)
T ss_pred h-------------ccCCCEEEEEecCChhhhhHHHHh--hhhccccCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 5 334567888999999999988876 5544433 7888888888888776655 444433
No 120
>PRK08116 hypothetical protein; Validated
Probab=99.19 E-value=1.4e-10 Score=115.78 Aligned_cols=135 Identities=21% Similarity=0.336 Sum_probs=82.7
Q ss_pred cccccccccccccCCCCCchhHHHHHHHHHHHhhhhCC--CCCCCeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEec
Q 012383 107 SQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLP--NIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMS 181 (465)
Q Consensus 107 ~~~~r~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~--~~~~p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs 181 (465)
+..++.++|+|...+ +. ...+...+++|+... ....+.|++|||+||||||+||.+||+++ +.+++.++
T Consensus 76 ~~~~~~~tFdnf~~~----~~--~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~ 149 (268)
T PRK08116 76 DEKFRNSTFENFLFD----KG--SEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN 149 (268)
T ss_pred CHHHHhcchhcccCC----hH--HHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 456677788876532 21 133445556555421 12335789999999999999999999995 78888898
Q ss_pred ccccccCCCCChHHHHHHHHHH-----HHHHHH-hCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccc
Q 012383 182 AGELESGNAGEPAKLIRQRYRE-----AADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCV 255 (465)
Q Consensus 182 ~s~L~s~~~Ge~~k~Ir~~F~~-----A~~~i~-~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v 255 (465)
.+++.+.+ ...|.. ..+.+. .....+|+|||+..... +......|++++|
T Consensus 150 ~~~ll~~i--------~~~~~~~~~~~~~~~~~~l~~~dlLviDDlg~e~~-----------t~~~~~~l~~iin----- 205 (268)
T PRK08116 150 FPQLLNRI--------KSTYKSSGKEDENEIIRSLVNADLLILDDLGAERD-----------TEWAREKVYNIID----- 205 (268)
T ss_pred HHHHHHHH--------HHHHhccccccHHHHHHHhcCCCEEEEecccCCCC-----------CHHHHHHHHHHHH-----
Confidence 88776432 111110 001112 23456999999953211 1223455667777
Q ss_pred cCCCccccCCCCCceEEEEeCCC
Q 012383 256 QLPGMYNKEENPRVPIIVTGNDF 278 (465)
Q Consensus 256 ~l~g~~~~~~~~~V~VI~TTN~~ 278 (465)
. ....+.++|+|||..
T Consensus 206 ---~----r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 206 ---S----RYRKGLPTIVTTNLS 221 (268)
T ss_pred ---H----HHHCCCCEEEECCCC
Confidence 1 123456899999975
No 121
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.18 E-value=1.8e-10 Score=126.64 Aligned_cols=168 Identities=13% Similarity=0.187 Sum_probs=106.9
Q ss_pred ccccccCCCCCchhHHHHHHHHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCc-----------------
Q 012383 114 NLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN----------------- 176 (465)
Q Consensus 114 ~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~----------------- 176 (465)
+|++++|. ..++...++++... +.|..+|||||+|||||++|+++|+.+++.
T Consensus 14 ~f~dviGQ---------e~vv~~L~~~l~~~--rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~ 82 (618)
T PRK14951 14 SFSEMVGQ---------EHVVQALTNALTQQ--RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQ 82 (618)
T ss_pred CHHHhcCc---------HHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccH
Confidence 56777776 44555666666543 557899999999999999999999998752
Q ss_pred ------------eEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHH
Q 012383 177 ------------PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNAT 244 (465)
Q Consensus 177 ------------~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~ 244 (465)
++.+++. .......+|++.+.+...-..++..|+||||+|.+... . .+.
T Consensus 83 ~C~~i~~g~h~D~~eldaa------s~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~------------a-~Na 143 (618)
T PRK14951 83 ACRDIDSGRFVDYTELDAA------SNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNT------------A-FNA 143 (618)
T ss_pred HHHHHHcCCCCceeecCcc------cccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHH------------H-HHH
Confidence 1111111 01123356666655411001344579999999876322 1 223
Q ss_pred HHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhhcCCCceEEEe-CCCHHHHHHHHHHhccCCCCC--hhHH
Q 012383 245 LMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVA--DDDI 321 (465)
Q Consensus 245 Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~-~P~~e~R~~Il~~~l~~~~v~--~~~l 321 (465)
|+..++ +....+.+|++|++++.+.+.++. |+..+-. .++.++..+.++.++...++. .+.+
T Consensus 144 LLKtLE-------------EPP~~~~fIL~Ttd~~kil~TIlS--Rc~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL 208 (618)
T PRK14951 144 MLKTLE-------------EPPEYLKFVLATTDPQKVPVTVLS--RCLQFNLRPMAPETVLEHLTQVLAAENVPAEPQAL 208 (618)
T ss_pred HHHhcc-------------cCCCCeEEEEEECCchhhhHHHHH--hceeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 444444 334567788888899999988776 6655444 778888888888887766554 3334
Q ss_pred HHHhc
Q 012383 322 VKLVD 326 (465)
Q Consensus 322 a~lt~ 326 (465)
..++.
T Consensus 209 ~~La~ 213 (618)
T PRK14951 209 RLLAR 213 (618)
T ss_pred HHHHH
Confidence 44433
No 122
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.18 E-value=2.4e-10 Score=122.57 Aligned_cols=168 Identities=15% Similarity=0.289 Sum_probs=108.6
Q ss_pred ccccccCCCCCchhHHHHHHHHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCC------------------
Q 012383 114 NLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI------------------ 175 (465)
Q Consensus 114 ~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~------------------ 175 (465)
+|+.++|. ..+....++.+... +.|..+||+||||+|||++|+.+|+.+++
T Consensus 11 ~f~dliGQ---------e~vv~~L~~a~~~~--ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i 79 (491)
T PRK14964 11 SFKDLVGQ---------DVLVRILRNAFTLN--KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISI 79 (491)
T ss_pred CHHHhcCc---------HHHHHHHHHHHHcC--CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHH
Confidence 45677766 33444445555433 56889999999999999999999998643
Q ss_pred ------ceEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhh
Q 012383 176 ------NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIA 249 (465)
Q Consensus 176 ------~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~ll 249 (465)
.++.++++. ..+...+|.+.+.+...--.+...|+||||+|.+.. . ....|+..+
T Consensus 80 ~~~~~~Dv~eidaas------~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~------------~-A~NaLLK~L 140 (491)
T PRK14964 80 KNSNHPDVIEIDAAS------NTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN------------S-AFNALLKTL 140 (491)
T ss_pred hccCCCCEEEEeccc------CCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCH------------H-HHHHHHHHH
Confidence 233343321 113445777766551111145678999999976532 1 123455555
Q ss_pred cCCccccCCCccccCCCCCceEEEEeCCCCCCChhhhcCCCceEEEe-CCCHHHHHHHHHHhccCCCC--ChhHHHHHhc
Q 012383 250 DNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNV--ADDDIVKLVD 326 (465)
Q Consensus 250 D~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~-~P~~e~R~~Il~~~l~~~~v--~~~~la~lt~ 326 (465)
+ +..+.+.+|++|+.++.|.+.++. |+..+-. .++.++..+.+..++...++ +.+.+..++.
T Consensus 141 E-------------ePp~~v~fIlatte~~Kl~~tI~S--Rc~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~ 205 (491)
T PRK14964 141 E-------------EPAPHVKFILATTEVKKIPVTIIS--RCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAE 205 (491)
T ss_pred h-------------CCCCCeEEEEEeCChHHHHHHHHH--hheeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 5 344667888888999999999886 5555444 78888888888888876654 4444444333
No 123
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.17 E-value=1.3e-10 Score=127.30 Aligned_cols=159 Identities=11% Similarity=0.197 Sum_probs=103.2
Q ss_pred ccccccCCCCCchhHHHHHHHHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCc-----------------
Q 012383 114 NLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN----------------- 176 (465)
Q Consensus 114 ~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~----------------- 176 (465)
+|+.++|. ..+....++++... +.|..+|||||||||||++|+++|+++.+.
T Consensus 14 ~f~~iiGq---------~~v~~~L~~~i~~~--~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i 82 (576)
T PRK14965 14 TFSDLTGQ---------EHVSRTLQNAIDTG--RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEI 82 (576)
T ss_pred CHHHccCc---------HHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHH
Confidence 56787777 33344445555433 568899999999999999999999997652
Q ss_pred -------eEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhh
Q 012383 177 -------PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIA 249 (465)
Q Consensus 177 -------~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~ll 249 (465)
++.+++. .......||++...+...-......|+||||+|.+... ....|+..|
T Consensus 83 ~~g~~~d~~eid~~------s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~-------------a~naLLk~L 143 (576)
T PRK14965 83 TEGRSVDVFEIDGA------SNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTN-------------AFNALLKTL 143 (576)
T ss_pred hcCCCCCeeeeecc------CccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHH-------------HHHHHHHHH
Confidence 1222211 11223456666655511101345579999999865321 123455566
Q ss_pred cCCccccCCCccccCCCCCceEEEEeCCCCCCChhhhcCCCceEEEe-CCCHHHHHHHHHHhccCCCCC
Q 012383 250 DNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVA 317 (465)
Q Consensus 250 D~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~-~P~~e~R~~Il~~~l~~~~v~ 317 (465)
+ +....+.+|++||.++.|.+.++. |+..+-. .++.++....+..+++..++.
T Consensus 144 E-------------epp~~~~fIl~t~~~~kl~~tI~S--Rc~~~~f~~l~~~~i~~~L~~i~~~egi~ 197 (576)
T PRK14965 144 E-------------EPPPHVKFIFATTEPHKVPITILS--RCQRFDFRRIPLQKIVDRLRYIADQEGIS 197 (576)
T ss_pred H-------------cCCCCeEEEEEeCChhhhhHHHHH--hhhhhhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 6 445678888999999999999885 5544434 677888777777777665543
No 124
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.16 E-value=3.4e-10 Score=123.49 Aligned_cols=160 Identities=19% Similarity=0.339 Sum_probs=97.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCChHHHHHHHHHHHHHHHH----hCCceEEEecccccc
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK----KGKMCCLMINDLDAG 224 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~----~~~p~ILfIDEIDai 224 (465)
-+.+||+||||-|||+||+.||+++|+.++.|++++=. +...++.....|...-. ..+|.||+|||||-.
T Consensus 326 kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeR------t~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 326 KKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDER------TAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGA 399 (877)
T ss_pred cceEEeecCCCCChhHHHHHHHHhcCceEEEecccccc------cHHHHHHHHHHHHhhccccccCCCcceEEEecccCC
Confidence 38999999999999999999999999999999998533 34455555555532222 378999999999832
Q ss_pred cCCCCCCcccchhhHHHHHHHHHhhc--CCccccCCCccc---c---CCCCCceEEEEeCCCCCCChhhhcCCC-ceEEE
Q 012383 225 AGRMGGTTQYTVNNQMVNATLMNIAD--NPTCVQLPGMYN---K---EENPRVPIIVTGNDFSTLYAPLIRDGR-MEKFY 295 (465)
Q Consensus 225 ~~~r~~~~~~~v~~~~v~~~Ll~llD--~~~~v~l~g~~~---~---~~~~~V~VI~TTN~~~~LD~ALlR~GR-fd~~i 295 (465)
. .....+++.++. +++...-++.-. . ...-.-||||.||+ |+.+-||+-| +-..+
T Consensus 400 ~-------------~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNd---LYaPaLR~Lr~~A~ii 463 (877)
T KOG1969|consen 400 P-------------RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICND---LYAPALRPLRPFAEII 463 (877)
T ss_pred c-------------HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecC---ccchhhhhcccceEEE
Confidence 1 112223333333 222111111100 0 01123499999998 4555556555 44444
Q ss_pred e--CCCHHHHHHHHHHhccCCC--CChhHHHHHhcCCCc
Q 012383 296 W--APTREDRIGVCKGIFRNDN--VADDDIVKLVDTFPG 330 (465)
Q Consensus 296 ~--~P~~e~R~~Il~~~l~~~~--v~~~~la~lt~gfsg 330 (465)
+ .|......+-|+.+...++ ++...|..+++-+.+
T Consensus 464 ~f~~p~~s~Lv~RL~~IC~rE~mr~d~~aL~~L~el~~~ 502 (877)
T KOG1969|consen 464 AFVPPSQSRLVERLNEICHRENMRADSKALNALCELTQN 502 (877)
T ss_pred EecCCChhHHHHHHHHHHhhhcCCCCHHHHHHHHHHhcc
Confidence 4 5555555566666666554 445566666665443
No 125
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.15 E-value=3e-10 Score=116.06 Aligned_cols=147 Identities=16% Similarity=0.243 Sum_probs=95.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHhCCc------------------------eEEecccccccCCCCChHHHHHHHHH
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQRYR 202 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~elg~~------------------------~i~vs~s~L~s~~~Ge~~k~Ir~~F~ 202 (465)
+.|..+|||||||+|||++|+++++.+... ++.+++. .......++.++.
T Consensus 34 ~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~ 107 (355)
T TIGR02397 34 RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIEIDAA------SNNGVDDIREILD 107 (355)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeecc------ccCCHHHHHHHHH
Confidence 457889999999999999999999997532 2222221 1123445677777
Q ss_pred HHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCC
Q 012383 203 EAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLY 282 (465)
Q Consensus 203 ~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD 282 (465)
.+...-..+...||+|||+|.+... .. ..|+..++ .....+.+|++||+++.+.
T Consensus 108 ~~~~~p~~~~~~vviidea~~l~~~------------~~-~~Ll~~le-------------~~~~~~~lIl~~~~~~~l~ 161 (355)
T TIGR02397 108 NVKYAPSSGKYKVYIIDEVHMLSKS------------AF-NALLKTLE-------------EPPEHVVFILATTEPHKIP 161 (355)
T ss_pred HHhcCcccCCceEEEEeChhhcCHH------------HH-HHHHHHHh-------------CCccceeEEEEeCCHHHHH
Confidence 6521111345569999999876321 11 23334444 2335677888899999899
Q ss_pred hhhhcCCCceEEEe-CCCHHHHHHHHHHhccCCC--CChhHHHHHhcC
Q 012383 283 APLIRDGRMEKFYW-APTREDRIGVCKGIFRNDN--VADDDIVKLVDT 327 (465)
Q Consensus 283 ~ALlR~GRfd~~i~-~P~~e~R~~Il~~~l~~~~--v~~~~la~lt~g 327 (465)
+++.+ |+..+-. .|+.++..++++.+++..+ ++.+.+..+++.
T Consensus 162 ~~l~s--r~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~ 207 (355)
T TIGR02397 162 ATILS--RCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARA 207 (355)
T ss_pred HHHHh--heeEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 98886 6655444 8899999999998887665 455544444443
No 126
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.15 E-value=1.4e-09 Score=123.95 Aligned_cols=111 Identities=16% Similarity=0.198 Sum_probs=71.7
Q ss_pred CCCeE-EEEEcCCCCcHHHHHHHHHHHh---CCceEEecccccccC------------CCCChHHHHHHHHHHHHHHHHh
Q 012383 147 KVPLI-LGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG------------NAGEPAKLIRQRYREAADIIKK 210 (465)
Q Consensus 147 ~~p~g-lLL~GPPGtGKT~LAraIA~el---g~~~i~vs~s~L~s~------------~~Ge~~k~Ir~~F~~A~~~i~~ 210 (465)
..|.| +||+||||||||.+|+++|..+ ...++.++.+++... |+|..+. ..+..+ +++
T Consensus 593 ~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~---g~L~~~---v~~ 666 (852)
T TIGR03345 593 RKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEG---GVLTEA---VRR 666 (852)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCCCCCccccccc---chHHHH---HHh
Confidence 34666 7999999999999999999998 446778887765322 4443211 112222 356
Q ss_pred CCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC
Q 012383 211 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF 278 (465)
Q Consensus 211 ~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~ 278 (465)
...+||+|||||+.- ..+...|++++|+-... ++.-......+.+||+|||..
T Consensus 667 ~p~svvllDEieka~-------------~~v~~~Llq~ld~g~l~--d~~Gr~vd~~n~iiI~TSNlg 719 (852)
T TIGR03345 667 KPYSVVLLDEVEKAH-------------PDVLELFYQVFDKGVME--DGEGREIDFKNTVILLTSNAG 719 (852)
T ss_pred CCCcEEEEechhhcC-------------HHHHHHHHHHhhcceee--cCCCcEEeccccEEEEeCCCc
Confidence 778999999998532 33456777888843211 111112334678999999963
No 127
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.15 E-value=3.4e-10 Score=115.60 Aligned_cols=134 Identities=19% Similarity=0.268 Sum_probs=89.2
Q ss_pred HHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCc---eEEecccccccCCCCChHHHHHHHHHHHHHHHH-hC
Q 012383 136 ITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN---PIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KG 211 (465)
Q Consensus 136 i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~---~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~-~~ 211 (465)
+.+++++...++ .++||||||||||+||+.|++...-+ |+.+++..- ..+-+|++|+.+..... ..
T Consensus 152 llrs~ieq~~ip---SmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a-------~t~dvR~ife~aq~~~~l~k 221 (554)
T KOG2028|consen 152 LLRSLIEQNRIP---SMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNA-------KTNDVRDIFEQAQNEKSLTK 221 (554)
T ss_pred HHHHHHHcCCCC---ceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecccc-------chHHHHHHHHHHHHHHhhhc
Confidence 456666655443 78899999999999999999987655 777776532 24678999999843333 66
Q ss_pred CceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEe--CCCCCCChhhhcCC
Q 012383 212 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTG--NDFSTLYAPLIRDG 289 (465)
Q Consensus 212 ~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TT--N~~~~LD~ALlR~G 289 (465)
+..|||||||..+-... +.++ ++ ..+.+.|.+|++| |---.|..||+.
T Consensus 222 rkTilFiDEiHRFNksQ-------------QD~f-----------LP----~VE~G~I~lIGATTENPSFqln~aLlS-- 271 (554)
T KOG2028|consen 222 RKTILFIDEIHRFNKSQ-------------QDTF-----------LP----HVENGDITLIGATTENPSFQLNAALLS-- 271 (554)
T ss_pred ceeEEEeHHhhhhhhhh-------------hhcc-----------cc----eeccCceEEEecccCCCccchhHHHHh--
Confidence 78999999996542221 1111 11 1445677888765 333478999997
Q ss_pred CceEEEe-CCCHHHHHHHHHH
Q 012383 290 RMEKFYW-APTREDRIGVCKG 309 (465)
Q Consensus 290 Rfd~~i~-~P~~e~R~~Il~~ 309 (465)
|+-.++. ..+.+.-..|+..
T Consensus 272 RC~VfvLekL~~n~v~~iL~r 292 (554)
T KOG2028|consen 272 RCRVFVLEKLPVNAVVTILMR 292 (554)
T ss_pred ccceeEeccCCHHHHHHHHHH
Confidence 4445555 5556666666554
No 128
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.14 E-value=5.7e-10 Score=121.28 Aligned_cols=159 Identities=16% Similarity=0.179 Sum_probs=91.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHh----------CCceEEeccccc-------ccCCCCChHHHH---HHHHHHH---
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGEL-------ESGNAGEPAKLI---RQRYREA--- 204 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~el----------g~~~i~vs~s~L-------~s~~~Ge~~k~I---r~~F~~A--- 204 (465)
.|..+|||||||||||++|+++.+++ +.+|+.+++... .+...|....-+ ...|..+
T Consensus 85 ~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~ 164 (531)
T TIGR02902 85 NPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIP 164 (531)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCcc
Confidence 35789999999999999999998753 357888887532 111111100000 0001100
Q ss_pred ---HHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCC-Ccccc---------------CC
Q 012383 205 ---ADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLP-GMYNK---------------EE 265 (465)
Q Consensus 205 ---~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~-g~~~~---------------~~ 265 (465)
...+......+|||||||.+... .+..|+.++++.. +.+. +.+.. ..
T Consensus 165 ~~~~G~l~~a~gG~L~IdEI~~L~~~-------------~q~~LL~~Le~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (531)
T TIGR02902 165 QPKPGAVTRAHGGVLFIDEIGELHPV-------------QMNKLLKVLEDRK-VFLDSAYYNSENPNIPSHIHDIFQNGL 230 (531)
T ss_pred cccCchhhccCCcEEEEechhhCCHH-------------HHHHHHHHHHhCe-eeeccccccccCcccccchhhhcccCc
Confidence 00112334579999999876432 2344555554221 1111 00000 01
Q ss_pred CCC-ceEEEEeCCCCCCChhhhcCCCceEEEe-CCCHHHHHHHHHHhccCCCC--ChhHHH
Q 012383 266 NPR-VPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNV--ADDDIV 322 (465)
Q Consensus 266 ~~~-V~VI~TTN~~~~LD~ALlR~GRfd~~i~-~P~~e~R~~Il~~~l~~~~v--~~~~la 322 (465)
... .+|++|||.++.|+|++++ |+..+.. .++.+++.+|++..++..++ +.+.+.
T Consensus 231 ~~d~rlI~ATt~~p~~L~paLrs--R~~~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~ 289 (531)
T TIGR02902 231 PADFRLIGATTRNPEEIPPALRS--RCVEIFFRPLLDEEIKEIAKNAAEKIGINLEKHALE 289 (531)
T ss_pred ccceEEEEEecCCcccCChHHhh--hhheeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHH
Confidence 122 3456677889999999987 7776655 77889999999998876544 444443
No 129
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.14 E-value=2.9e-10 Score=123.46 Aligned_cols=165 Identities=13% Similarity=0.203 Sum_probs=101.2
Q ss_pred ccccccCCCCCchhHHHHHHHHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEe--ccc--------
Q 012383 114 NLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM--SAG-------- 183 (465)
Q Consensus 114 ~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~v--s~s-------- 183 (465)
+|+.++|. ..+....++.+.. -+.+..+|||||||||||++|+++|+.+++..-.. .++
T Consensus 14 ~f~divGq---------~~v~~~L~~~i~~--~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i 82 (527)
T PRK14969 14 SFSELVGQ---------EHVVRALTNALEQ--QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEI 82 (527)
T ss_pred cHHHhcCc---------HHHHHHHHHHHHc--CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHH
Confidence 55777766 2333344444443 35678899999999999999999999987631100 000
Q ss_pred ------ccc--cCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccc
Q 012383 184 ------ELE--SGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCV 255 (465)
Q Consensus 184 ------~L~--s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v 255 (465)
++. +.........+|.+...+...-..+...|+||||+|.+... ....|+..++
T Consensus 83 ~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~-------------a~naLLK~LE----- 144 (527)
T PRK14969 83 DSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKS-------------AFNAMLKTLE----- 144 (527)
T ss_pred hcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHH-------------HHHHHHHHHh-----
Confidence 000 00001123456666665511111455679999999876321 1123445555
Q ss_pred cCCCccccCCCCCceEEEEeCCCCCCChhhhcCCCceEEEe-CCCHHHHHHHHHHhccCCCCC
Q 012383 256 QLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVA 317 (465)
Q Consensus 256 ~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~-~P~~e~R~~Il~~~l~~~~v~ 317 (465)
+....+.+|++|++++.+.+.++. |+..+-. .|+.++-.+.+..++...++.
T Consensus 145 --------epp~~~~fIL~t~d~~kil~tI~S--Rc~~~~f~~l~~~~i~~~L~~il~~egi~ 197 (527)
T PRK14969 145 --------EPPEHVKFILATTDPQKIPVTVLS--RCLQFNLKQMPPPLIVSHLQHILEQENIP 197 (527)
T ss_pred --------CCCCCEEEEEEeCChhhCchhHHH--HHHHHhcCCCCHHHHHHHHHHHHHHcCCC
Confidence 334667888888999999988765 5544444 788888888887777665553
No 130
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.14 E-value=1.3e-09 Score=116.35 Aligned_cols=168 Identities=13% Similarity=0.166 Sum_probs=103.3
Q ss_pred cccccccCCCCCchhHHHHHHHHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCc----------------
Q 012383 113 YNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN---------------- 176 (465)
Q Consensus 113 ~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~---------------- 176 (465)
-+|+.++|.. .+....++.+.. -+.|..+|||||||+|||++|+++|+.+...
T Consensus 14 ~~~~diiGq~---------~~v~~L~~~i~~--~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~ 82 (451)
T PRK06305 14 QTFSEILGQD---------AVVAVLKNALRF--NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCK 82 (451)
T ss_pred CCHHHhcCcH---------HHHHHHHHHHHc--CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHH
Confidence 3557777762 223333444432 2567899999999999999999999997542
Q ss_pred ---------eEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHH
Q 012383 177 ---------PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMN 247 (465)
Q Consensus 177 ---------~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~ 247 (465)
++.+.+.. .. +...++.+-+...-.-......||||||+|.+... ....|+.
T Consensus 83 ~i~~~~~~d~~~i~g~~----~~--gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~-------------~~n~LLk 143 (451)
T PRK06305 83 EISSGTSLDVLEIDGAS----HR--GIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKE-------------AFNSLLK 143 (451)
T ss_pred HHhcCCCCceEEeeccc----cC--CHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHH-------------HHHHHHH
Confidence 11121110 11 12334443332211111467789999999876321 1234555
Q ss_pred hhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhhcCCCceEEEe-CCCHHHHHHHHHHhccCCC--CChhHHHHH
Q 012383 248 IADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDN--VADDDIVKL 324 (465)
Q Consensus 248 llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~-~P~~e~R~~Il~~~l~~~~--v~~~~la~l 324 (465)
.++ .....+.+|++||++..|.++++. |+..+.. .++.++...++...++..+ ++.+.+..+
T Consensus 144 ~lE-------------ep~~~~~~Il~t~~~~kl~~tI~s--Rc~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L 208 (451)
T PRK06305 144 TLE-------------EPPQHVKFFLATTEIHKIPGTILS--RCQKMHLKRIPEETIIDKLALIAKQEGIETSREALLPI 208 (451)
T ss_pred Hhh-------------cCCCCceEEEEeCChHhcchHHHH--hceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 555 334567888888999999999987 5555444 7888888888888776655 444434333
Q ss_pred h
Q 012383 325 V 325 (465)
Q Consensus 325 t 325 (465)
+
T Consensus 209 ~ 209 (451)
T PRK06305 209 A 209 (451)
T ss_pred H
Confidence 3
No 131
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.13 E-value=1.4e-09 Score=106.71 Aligned_cols=150 Identities=16% Similarity=0.202 Sum_probs=100.5
Q ss_pred HHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEecccccccCCCCChHHHHHHHHHHHHHHHH-h
Q 012383 135 HITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-K 210 (465)
Q Consensus 135 ~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~-~ 210 (465)
.+.+|........+...+||||++|||||++++++.++. |+.+|.+....|. .+-.++... + .
T Consensus 38 ~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~---------~l~~l~~~l----~~~ 104 (249)
T PF05673_consen 38 ALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLG---------DLPELLDLL----RDR 104 (249)
T ss_pred HHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhc---------cHHHHHHHH----hcC
Confidence 344444443333567899999999999999999999974 7788888887665 233444433 4 5
Q ss_pred CCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhhc-C-
Q 012383 211 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIR-D- 288 (465)
Q Consensus 211 ~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR-~- 288 (465)
..+-|||+||+. +... .. .-. .|..+|+ |. ......+|.|.+|+||...+++-+.- .
T Consensus 105 ~~kFIlf~DDLs--Fe~~--d~----~yk----~LKs~Le--------Gg-le~~P~NvliyATSNRRHLv~E~~~d~~~ 163 (249)
T PF05673_consen 105 PYKFILFCDDLS--FEEG--DT----EYK----ALKSVLE--------GG-LEARPDNVLIYATSNRRHLVPESFSDRED 163 (249)
T ss_pred CCCEEEEecCCC--CCCC--cH----HHH----HHHHHhc--------Cc-cccCCCcEEEEEecchhhccchhhhhccC
Confidence 567899999973 1111 11 112 3334445 33 12446899999999998877765432 1
Q ss_pred -------------------CCceEEEe--CCCHHHHHHHHHHhccCCCCCh
Q 012383 289 -------------------GRMEKFYW--APTREDRIGVCKGIFRNDNVAD 318 (465)
Q Consensus 289 -------------------GRfd~~i~--~P~~e~R~~Il~~~l~~~~v~~ 318 (465)
.||-..+. .|+.++=++|++.++...++..
T Consensus 164 ~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~ 214 (249)
T PF05673_consen 164 IQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLEL 214 (249)
T ss_pred CCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 36666666 8999999999999997665443
No 132
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.12 E-value=3.7e-10 Score=119.49 Aligned_cols=137 Identities=15% Similarity=0.103 Sum_probs=75.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHhCCc-------eEEec----ccccccCCC--CChHHHHHHHHHHHHHHHHh--CCc
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKMGIN-------PIMMS----AGELESGNA--GEPAKLIRQRYREAADIIKK--GKM 213 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~elg~~-------~i~vs----~s~L~s~~~--Ge~~k~Ir~~F~~A~~~i~~--~~p 213 (465)
.+.++|+||||||||++|+.+|..+... .+.++ ..+++.++. +..-.....+|.++...++. ..|
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~ 273 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKK 273 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccCC
Confidence 4689999999999999999999987531 12222 223333331 11111112344333222242 468
Q ss_pred eEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCc---cccCC----Ccc--ccCCCCCceEEEEeCCCC----C
Q 012383 214 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT---CVQLP----GMY--NKEENPRVPIIVTGNDFS----T 280 (465)
Q Consensus 214 ~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~---~v~l~----g~~--~~~~~~~V~VI~TTN~~~----~ 280 (465)
++||||||+..-..+ +...++.++++-. ...++ ... .-.-..++.||+|+|..+ .
T Consensus 274 ~vliIDEINRani~k------------iFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~ 341 (459)
T PRK11331 274 YVFIIDEINRANLSK------------VFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLAV 341 (459)
T ss_pred cEEEEehhhccCHHH------------hhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCccccchhh
Confidence 999999998642211 1122334444211 00010 000 012347899999999988 8
Q ss_pred CChhhhcCCCceEEEeCCC
Q 012383 281 LYAPLIRDGRMEKFYWAPT 299 (465)
Q Consensus 281 LD~ALlR~GRfd~~i~~P~ 299 (465)
+|.||+| ||..+-..|+
T Consensus 342 lD~AlrR--RF~fi~i~p~ 358 (459)
T PRK11331 342 VDYALRR--RFSFIDIEPG 358 (459)
T ss_pred ccHHHHh--hhheEEecCC
Confidence 9999999 6543222453
No 133
>PRK12377 putative replication protein; Provisional
Probab=99.12 E-value=4.6e-10 Score=110.89 Aligned_cols=134 Identities=13% Similarity=0.112 Sum_probs=80.5
Q ss_pred ccccccccccccCCCCCchhHHHHHHHHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEecccc
Q 012383 108 QGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGE 184 (465)
Q Consensus 108 ~~~r~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~s~ 184 (465)
..++..+|+|..... +. .+.+...++.|.....- ...+++||||||||||+||.+||+++ |..++.++..+
T Consensus 66 ~~~~~~tFdnf~~~~---~~--~~~a~~~a~~~a~~~~~-~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~ 139 (248)
T PRK12377 66 PLHRKCSFANYQVQN---DG--QRYALSQAKSIADELMT-GCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPD 139 (248)
T ss_pred cccccCCcCCcccCC---hh--HHHHHHHHHHHHHHHHh-cCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHH
Confidence 344455666654321 11 12244445555442211 24689999999999999999999996 67788888877
Q ss_pred cccCCCCChHHHHHHHHHHH---HHHHH-hCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCc
Q 012383 185 LESGNAGEPAKLIRQRYREA---ADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGM 260 (465)
Q Consensus 185 L~s~~~Ge~~k~Ir~~F~~A---~~~i~-~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~ 260 (465)
+... ++..|... .+.++ -....+|+||||...... ......|+++++ .
T Consensus 140 l~~~--------l~~~~~~~~~~~~~l~~l~~~dLLiIDDlg~~~~s-----------~~~~~~l~~ii~---------~ 191 (248)
T PRK12377 140 VMSR--------LHESYDNGQSGEKFLQELCKVDLLVLDEIGIQRET-----------KNEQVVLNQIID---------R 191 (248)
T ss_pred HHHH--------HHHHHhccchHHHHHHHhcCCCEEEEcCCCCCCCC-----------HHHHHHHHHHHH---------H
Confidence 7632 22222110 01122 356789999999654321 123456777777 1
Q ss_pred cccCCCCCceEEEEeCCC
Q 012383 261 YNKEENPRVPIIVTGNDF 278 (465)
Q Consensus 261 ~~~~~~~~V~VI~TTN~~ 278 (465)
....+.|+|+|||..
T Consensus 192 ---R~~~~~ptiitSNl~ 206 (248)
T PRK12377 192 ---RTASMRSVGMLTNLN 206 (248)
T ss_pred ---HHhcCCCEEEEcCCC
Confidence 234567999999975
No 134
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=2.4e-10 Score=118.75 Aligned_cols=147 Identities=20% Similarity=0.296 Sum_probs=104.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEEeccccc-ccCCCCCh-HHHHHHHHHHHHHHHHhCCceEEEecccccccCCC
Q 012383 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL-ESGNAGEP-AKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRM 228 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L-~s~~~Ge~-~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r 228 (465)
.|||.||.|+|||+||+.+|+-++++|...++..| ..+|+||. +..|..++..|.--+.+.+..|+||||+|+|...-
T Consensus 228 NvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~~ 307 (564)
T KOG0745|consen 228 NVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKKA 307 (564)
T ss_pred cEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcccC
Confidence 78999999999999999999999999999999999 56799986 55677787777444446778899999999998544
Q ss_pred CC-CcccchhhHHHHHHHHHhhcCCccccCCCccc-cCCCCCceEEEEeC-------CCCCCChhhhcCCCceEEEe---
Q 012383 229 GG-TTQYTVNNQMVNATLMNIADNPTCVQLPGMYN-KEENPRVPIIVTGN-------DFSTLYAPLIRDGRMEKFYW--- 296 (465)
Q Consensus 229 ~~-~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~-~~~~~~V~VI~TTN-------~~~~LD~ALlR~GRfd~~i~--- 296 (465)
.+ .....|...-+++.|+.|+.. +.|.+++-.. .......+.|=||| -+..||.-+-| |++....
T Consensus 308 ~~i~~~RDVsGEGVQQaLLKllEG-tvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~r--R~~d~slGFg 384 (564)
T KOG0745|consen 308 ESIHTSRDVSGEGVQQALLKLLEG-TVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISR--RLDDKSLGFG 384 (564)
T ss_pred ccccccccccchhHHHHHHHHhcc-cEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHH--hhcchhcccC
Confidence 32 223567778899999999984 3344432211 01122333333443 45667777777 6666555
Q ss_pred CCCH
Q 012383 297 APTR 300 (465)
Q Consensus 297 ~P~~ 300 (465)
.|+.
T Consensus 385 ~~s~ 388 (564)
T KOG0745|consen 385 APSS 388 (564)
T ss_pred CCCC
Confidence 5644
No 135
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.11 E-value=1.9e-09 Score=108.20 Aligned_cols=163 Identities=17% Similarity=0.223 Sum_probs=97.4
Q ss_pred HHHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCC-----ceEEecccccccCCCCChHHHHHHHHHHHHHH
Q 012383 133 VVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI-----NPIMMSAGELESGNAGEPAKLIRQRYREAADI 207 (465)
Q Consensus 133 ~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~-----~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~ 207 (465)
+....+.++..... | .++||||||||||++++++++++.. +++.++.+.-. ....++..+......
T Consensus 25 ~~~~l~~~i~~~~~--~-~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~------~~~~~~~~i~~~~~~ 95 (319)
T PRK00440 25 IVERLKSYVKEKNM--P-HLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDER------GIDVIRNKIKEFART 95 (319)
T ss_pred HHHHHHHHHhCCCC--C-eEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecccccc------chHHHHHHHHHHHhc
Confidence 34445555554322 2 4799999999999999999999732 34444433211 112233333332111
Q ss_pred HH--hCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhh
Q 012383 208 IK--KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPL 285 (465)
Q Consensus 208 i~--~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~AL 285 (465)
.. ...+.+|+|||+|.+... ....|..+++ .......+|+++|.+..+.+++
T Consensus 96 ~~~~~~~~~vviiDe~~~l~~~-------------~~~~L~~~le-------------~~~~~~~lIl~~~~~~~l~~~l 149 (319)
T PRK00440 96 APVGGAPFKIIFLDEADNLTSD-------------AQQALRRTME-------------MYSQNTRFILSCNYSSKIIDPI 149 (319)
T ss_pred CCCCCCCceEEEEeCcccCCHH-------------HHHHHHHHHh-------------cCCCCCeEEEEeCCccccchhH
Confidence 11 134679999999876321 1123444444 1223456888889888888888
Q ss_pred hcCCCceEEEe-CCCHHHHHHHHHHhccCCC--CChhHHHHHhcCCCchhh
Q 012383 286 IRDGRMEKFYW-APTREDRIGVCKGIFRNDN--VADDDIVKLVDTFPGQSI 333 (465)
Q Consensus 286 lR~GRfd~~i~-~P~~e~R~~Il~~~l~~~~--v~~~~la~lt~gfsgadl 333 (465)
.+ |+..+.. .|+.++...+++.++...+ ++.+.+..++.. ++.++
T Consensus 150 ~s--r~~~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~-~~gd~ 197 (319)
T PRK00440 150 QS--RCAVFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYV-SEGDM 197 (319)
T ss_pred HH--HhheeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-cCCCH
Confidence 76 4444333 8889999999988887655 455555555543 34344
No 136
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.10 E-value=2.4e-09 Score=118.27 Aligned_cols=149 Identities=13% Similarity=0.194 Sum_probs=93.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEE----eccc--------------cc--ccCCCCChHHHHHHHHHHHHH
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIM----MSAG--------------EL--ESGNAGEPAKLIRQRYREAAD 206 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~----vs~s--------------~L--~s~~~Ge~~k~Ir~~F~~A~~ 206 (465)
+.+..+|||||||+|||++|+++|+.+++.... ..++ ++ .+...+.....||++...+..
T Consensus 36 rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~ 115 (620)
T PRK14948 36 RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQF 115 (620)
T ss_pred CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhh
Confidence 345689999999999999999999998763110 0000 01 111122345677888776621
Q ss_pred HHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhh
Q 012383 207 IIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLI 286 (465)
Q Consensus 207 ~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALl 286 (465)
.-..+...|+||||+|.+.. .....|+..++ +....+.+|++|++++.|.+.|+
T Consensus 116 ~p~~~~~KViIIDEad~Lt~-------------~a~naLLK~LE-------------ePp~~tvfIL~t~~~~~llpTIr 169 (620)
T PRK14948 116 APVQARWKVYVIDECHMLST-------------AAFNALLKTLE-------------EPPPRVVFVLATTDPQRVLPTII 169 (620)
T ss_pred ChhcCCceEEEEECccccCH-------------HHHHHHHHHHh-------------cCCcCeEEEEEeCChhhhhHHHH
Confidence 11135567999999987631 11234555555 34456778888889999999987
Q ss_pred cCCCceEEEe-CCCHHHHHHHHHHhccCCC--CChhHHHH
Q 012383 287 RDGRMEKFYW-APTREDRIGVCKGIFRNDN--VADDDIVK 323 (465)
Q Consensus 287 R~GRfd~~i~-~P~~e~R~~Il~~~l~~~~--v~~~~la~ 323 (465)
. |+..+-. .|+.++-...+..+....+ ++.+.+..
T Consensus 170 S--Rc~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~ 207 (620)
T PRK14948 170 S--RCQRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTL 207 (620)
T ss_pred h--heeEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 5 6655555 6777777766666665543 44444333
No 137
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.09 E-value=1.2e-09 Score=121.51 Aligned_cols=165 Identities=13% Similarity=0.236 Sum_probs=103.1
Q ss_pred ccccccCCCCCchhHHHHHHHHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEe---cc--------
Q 012383 114 NLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM---SA-------- 182 (465)
Q Consensus 114 ~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~v---s~-------- 182 (465)
+|+.++|. ..+....++.+... +.+..+|||||||||||++|+++|+.+.+.--.. .+
T Consensus 16 ~f~dIiGQ---------e~~v~~L~~aI~~~--rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~ 84 (725)
T PRK07133 16 TFDDIVGQ---------DHIVQTLKNIIKSN--KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVN 84 (725)
T ss_pred CHHHhcCc---------HHHHHHHHHHHHcC--CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhc
Confidence 44666665 22233334444322 5678999999999999999999999976531100 00
Q ss_pred --cccc--cCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCC
Q 012383 183 --GELE--SGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLP 258 (465)
Q Consensus 183 --s~L~--s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~ 258 (465)
..+. +.....+...||.+...+...-..+...|+||||+|.+... ....|+..++
T Consensus 85 ~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~-------------A~NALLKtLE-------- 143 (725)
T PRK07133 85 NSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKS-------------AFNALLKTLE-------- 143 (725)
T ss_pred CCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHH-------------HHHHHHHHhh--------
Confidence 0000 00001224457777766522112466789999999876321 1234555555
Q ss_pred CccccCCCCCceEEEEeCCCCCCChhhhcCCCceEEEe-CCCHHHHHHHHHHhccCCCCC
Q 012383 259 GMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVA 317 (465)
Q Consensus 259 g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~-~P~~e~R~~Il~~~l~~~~v~ 317 (465)
+....+.+|++|+.++.|++.++. |+.++-. .|+.++...+++..+...++.
T Consensus 144 -----EPP~~tifILaTte~~KLl~TI~S--Rcq~ieF~~L~~eeI~~~L~~il~kegI~ 196 (725)
T PRK07133 144 -----EPPKHVIFILATTEVHKIPLTILS--RVQRFNFRRISEDEIVSRLEFILEKENIS 196 (725)
T ss_pred -----cCCCceEEEEEcCChhhhhHHHHh--hceeEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 344567888888899999999886 6654444 888999888888877666554
No 138
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.09 E-value=1.1e-09 Score=119.74 Aligned_cols=143 Identities=15% Similarity=0.208 Sum_probs=93.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHhCCc------------------------eEEecccccccCCCCChHHHHHHHHH
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQRYR 202 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~elg~~------------------------~i~vs~s~L~s~~~Ge~~k~Ir~~F~ 202 (465)
+.|.++|||||||||||++|+++|+.+.+. ++.++++. .-....+|.+..
T Consensus 36 rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~DiieIdaas------~igVd~IReIi~ 109 (605)
T PRK05896 36 KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVELDAAS------NNGVDEIRNIID 109 (605)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceEEecccc------ccCHHHHHHHHH
Confidence 567899999999999999999999997541 11122110 112334666665
Q ss_pred HHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCC
Q 012383 203 EAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLY 282 (465)
Q Consensus 203 ~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD 282 (465)
.+...--.+...|++|||+|.+... ....|+..++ +....+.+|++|+.+..|.
T Consensus 110 ~~~~~P~~~~~KVIIIDEad~Lt~~-------------A~NaLLKtLE-------------EPp~~tvfIL~Tt~~~KLl 163 (605)
T PRK05896 110 NINYLPTTFKYKVYIIDEAHMLSTS-------------AWNALLKTLE-------------EPPKHVVFIFATTEFQKIP 163 (605)
T ss_pred HHHhchhhCCcEEEEEechHhCCHH-------------HHHHHHHHHH-------------hCCCcEEEEEECCChHhhh
Confidence 5421111344569999999876311 1234555666 3345678888888999999
Q ss_pred hhhhcCCCceEEEe-CCCHHHHHHHHHHhccCCC--CChhHHHH
Q 012383 283 APLIRDGRMEKFYW-APTREDRIGVCKGIFRNDN--VADDDIVK 323 (465)
Q Consensus 283 ~ALlR~GRfd~~i~-~P~~e~R~~Il~~~l~~~~--v~~~~la~ 323 (465)
+++++ |+..+-. .|+.++...+++..+...+ ++.+.+..
T Consensus 164 ~TI~S--Rcq~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~ 205 (605)
T PRK05896 164 LTIIS--RCQRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDK 205 (605)
T ss_pred HHHHh--hhhhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 99887 5554444 8889998888888776654 55554433
No 139
>PRK06835 DNA replication protein DnaC; Validated
Probab=99.09 E-value=3.3e-10 Score=116.25 Aligned_cols=140 Identities=20% Similarity=0.231 Sum_probs=87.0
Q ss_pred ccccccccccccCCCC---------CchhHHHHHHHHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHh---CC
Q 012383 108 QGLRTYNLDNTIDGLY---------IAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM---GI 175 (465)
Q Consensus 108 ~~~r~~~~~~~~~~~~---------i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~el---g~ 175 (465)
..++..+|++...++| .+|.-..+.+...+++|.....-. ..+++||||||||||+|+.|||+++ |.
T Consensus 134 ~~~~~~~F~nf~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~f~~~f~~~-~~~Lll~G~~GtGKThLa~aIa~~l~~~g~ 212 (329)
T PRK06835 134 EILKEENFSNFNLNYYSDEKDDDEPLSPRKNMEKILEKCKNFIENFDKN-NENLLFYGNTGTGKTFLSNCIAKELLDRGK 212 (329)
T ss_pred hHHHhCChhhCCccccCccccccCCCCHHHHHHHHHHHHHHHHHHHhcc-CCcEEEECCCCCcHHHHHHHHHHHHHHCCC
Confidence 3445556666655543 355555556667777788744322 3789999999999999999999995 77
Q ss_pred ceEEecccccccCCCCChHHHHHHHHHH---HHHHH-HhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcC
Q 012383 176 NPIMMSAGELESGNAGEPAKLIRQRYRE---AADII-KKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADN 251 (465)
Q Consensus 176 ~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~---A~~~i-~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~ 251 (465)
.++.++..++...... ..|.. ....+ .-....+|+|||+..... +......|+++++
T Consensus 213 ~V~y~t~~~l~~~l~~-------~~~~~~~~~~~~~~~l~~~DLLIIDDlG~e~~-----------t~~~~~~Lf~iin- 273 (329)
T PRK06835 213 SVIYRTADELIEILRE-------IRFNNDKELEEVYDLLINCDLLIIDDLGTEKI-----------TEFSKSELFNLIN- 273 (329)
T ss_pred eEEEEEHHHHHHHHHH-------HHhccchhHHHHHHHhccCCEEEEeccCCCCC-----------CHHHHHHHHHHHH-
Confidence 8888988887643210 00100 00001 123557999999955321 1233455666666
Q ss_pred CccccCCCccccCCCCCceEEEEeCCC
Q 012383 252 PTCVQLPGMYNKEENPRVPIIVTGNDF 278 (465)
Q Consensus 252 ~~~v~l~g~~~~~~~~~V~VI~TTN~~ 278 (465)
. ....+.++|+|||..
T Consensus 274 --------~---R~~~~k~tIiTSNl~ 289 (329)
T PRK06835 274 --------K---RLLRQKKMIISTNLS 289 (329)
T ss_pred --------H---HHHCCCCEEEECCCC
Confidence 1 122346899999974
No 140
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.08 E-value=8.1e-10 Score=115.95 Aligned_cols=170 Identities=15% Similarity=0.192 Sum_probs=97.4
Q ss_pred cccccccCCCCCchhHHHHHHHHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEE----------ecc
Q 012383 113 YNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM----------MSA 182 (465)
Q Consensus 113 ~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~----------vs~ 182 (465)
-+|+.++|. ..+....++++... +.|..+|||||||||||++|+++|+++.+.-.. -.+
T Consensus 13 ~~~~eiiGq---------~~~~~~L~~~~~~~--~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c 81 (397)
T PRK14955 13 KKFADITAQ---------EHITRTIQNSLRMG--RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPC 81 (397)
T ss_pred CcHhhccCh---------HHHHHHHHHHHHhC--CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCC
Confidence 355777766 22333444554432 568899999999999999999999998763100 000
Q ss_pred cc------c-------ccCCCCC---hHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHH
Q 012383 183 GE------L-------ESGNAGE---PAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLM 246 (465)
Q Consensus 183 s~------L-------~s~~~Ge---~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll 246 (465)
+. + ...+-|. ....|+++...+...--.+...|+||||+|.+... . ...|+
T Consensus 82 ~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~------------~-~~~LL 148 (397)
T PRK14955 82 GECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIA------------A-FNAFL 148 (397)
T ss_pred CCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHH------------H-HHHHH
Confidence 00 0 0001121 13345554433310001345579999999876321 1 12344
Q ss_pred HhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhhcCCCceEEEe-CCCHHHHHHHHHHhccCCC--CChhHH
Q 012383 247 NIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDN--VADDDI 321 (465)
Q Consensus 247 ~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~-~P~~e~R~~Il~~~l~~~~--v~~~~l 321 (465)
..++ +..+...+|++|+++..|.+++.+ |+..+-. .++.++-...++..++..+ ++.+.+
T Consensus 149 k~LE-------------ep~~~t~~Il~t~~~~kl~~tl~s--R~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al 211 (397)
T PRK14955 149 KTLE-------------EPPPHAIFIFATTELHKIPATIAS--RCQRFNFKRIPLEEIQQQLQGICEAEGISVDADAL 211 (397)
T ss_pred HHHh-------------cCCCCeEEEEEeCChHHhHHHHHH--HHHHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 4444 233456677777888889888876 4443222 6778888877777776554 444433
No 141
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.08 E-value=1.2e-09 Score=117.48 Aligned_cols=173 Identities=19% Similarity=0.269 Sum_probs=101.5
Q ss_pred ccccccCCCCCchhHHHHHHHHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCc-eEE------------e
Q 012383 114 NLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN-PIM------------M 180 (465)
Q Consensus 114 ~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~-~i~------------v 180 (465)
+|+.++|. ..+....++.+.. -+.+..+|||||||+|||++|+++|+.+++. ... +
T Consensus 14 ~f~diiGq---------~~i~~~L~~~i~~--~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i 82 (486)
T PRK14953 14 FFKEVIGQ---------EIVVRILKNAVKL--QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEI 82 (486)
T ss_pred cHHHccCh---------HHHHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHH
Confidence 44666655 2233344444443 2457789999999999999999999997641 000 0
Q ss_pred cc---cccc--cCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccc
Q 012383 181 SA---GELE--SGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCV 255 (465)
Q Consensus 181 s~---s~L~--s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v 255 (465)
.. .++. +.-.......+|.+...+...-..+...|+||||+|.+... . ...|+..++
T Consensus 83 ~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~------------a-~naLLk~LE----- 144 (486)
T PRK14953 83 DKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKE------------A-FNALLKTLE----- 144 (486)
T ss_pred hcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHH------------H-HHHHHHHHh-----
Confidence 00 0010 00011123345555444411111456789999999865321 1 123444444
Q ss_pred cCCCccccCCCCCceEEEEeCCCCCCChhhhcCCCceEEEe-CCCHHHHHHHHHHhccCCCCCh--hHHHHHh
Q 012383 256 QLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVAD--DDIVKLV 325 (465)
Q Consensus 256 ~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~-~P~~e~R~~Il~~~l~~~~v~~--~~la~lt 325 (465)
+....+.+|++|++++.+++++++ |+.++.. .|+.++...+++.+++..++.. +.+..++
T Consensus 145 --------epp~~~v~Il~tt~~~kl~~tI~S--Rc~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La 207 (486)
T PRK14953 145 --------EPPPRTIFILCTTEYDKIPPTILS--RCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLA 207 (486)
T ss_pred --------cCCCCeEEEEEECCHHHHHHHHHH--hceEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 233456777778888899999886 5554444 8889999999988887665543 4444433
No 142
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.05 E-value=8.3e-09 Score=113.51 Aligned_cols=164 Identities=13% Similarity=0.150 Sum_probs=103.0
Q ss_pred ccccccCCCCCchhHHHHHHHHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEec-c----------
Q 012383 114 NLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS-A---------- 182 (465)
Q Consensus 114 ~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs-~---------- 182 (465)
+|+.++|. ..++...++++... +.|..+|||||+|+|||++|+++|+.+.+.....+ +
T Consensus 22 ~f~dliGq---------~~~v~~L~~~~~~g--ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~ 90 (598)
T PRK09111 22 TFDDLIGQ---------EAMVRTLTNAFETG--RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGE 90 (598)
T ss_pred CHHHhcCc---------HHHHHHHHHHHHcC--CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccH
Confidence 55677766 33444445555433 56889999999999999999999999876432111 0
Q ss_pred ----------cccccCCC--CChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhc
Q 012383 183 ----------GELESGNA--GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 250 (465)
Q Consensus 183 ----------s~L~s~~~--Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD 250 (465)
.++..-.. --+...||++...+...--.....|+||||+|.+.. . ....|+..+.
T Consensus 91 ~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~------------~-a~naLLKtLE 157 (598)
T PRK09111 91 HCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLST------------A-AFNALLKTLE 157 (598)
T ss_pred HHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCH------------H-HHHHHHHHHH
Confidence 01110000 012345677766552111145568999999987632 1 1234444455
Q ss_pred CCccccCCCccccCCCCCceEEEEeCCCCCCChhhhcCCCceEEEe-CCCHHHHHHHHHHhccCCCC
Q 012383 251 NPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNV 316 (465)
Q Consensus 251 ~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~-~P~~e~R~~Il~~~l~~~~v 316 (465)
+....+.+|++|+.++.+.+.++. |+.++-. .|+.++...+++..+...++
T Consensus 158 -------------ePp~~~~fIl~tte~~kll~tI~S--Rcq~~~f~~l~~~el~~~L~~i~~kegi 209 (598)
T PRK09111 158 -------------EPPPHVKFIFATTEIRKVPVTVLS--RCQRFDLRRIEADVLAAHLSRIAAKEGV 209 (598)
T ss_pred -------------hCCCCeEEEEEeCChhhhhHHHHh--heeEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 334567788888888889888875 6655444 88899988888888776644
No 143
>PRK07952 DNA replication protein DnaC; Validated
Probab=99.05 E-value=1.4e-09 Score=107.18 Aligned_cols=114 Identities=11% Similarity=0.223 Sum_probs=72.5
Q ss_pred HHHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEecccccccCCCCChHHHHHHHHHHH----H
Q 012383 133 VVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREA----A 205 (465)
Q Consensus 133 ~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A----~ 205 (465)
++..++.|.....- ...+++|+|+||||||+|+.+||+++ |..++.++.+++.+.. +..|..+ .
T Consensus 84 al~~a~~~~~~~~~-~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l--------~~~~~~~~~~~~ 154 (244)
T PRK07952 84 ALSKARQYVEEFDG-NIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAM--------KDTFSNSETSEE 154 (244)
T ss_pred HHHHHHHHHHhhcc-CCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHH--------HHHHhhccccHH
Confidence 45556666643211 13589999999999999999999997 7788888888776332 2222100 0
Q ss_pred HHHH-hCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC
Q 012383 206 DIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF 278 (465)
Q Consensus 206 ~~i~-~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~ 278 (465)
+++. -....+|+|||+++.... .....+|.++++ . ....+.++|+|||..
T Consensus 155 ~~l~~l~~~dlLvIDDig~~~~s-----------~~~~~~l~~Ii~---------~---Ry~~~~~tiitSNl~ 205 (244)
T PRK07952 155 QLLNDLSNVDLLVIDEIGVQTES-----------RYEKVIINQIVD---------R---RSSSKRPTGMLTNSN 205 (244)
T ss_pred HHHHHhccCCEEEEeCCCCCCCC-----------HHHHHHHHHHHH---------H---HHhCCCCEEEeCCCC
Confidence 1111 235789999999764311 222345666666 1 233467999999975
No 144
>PRK06921 hypothetical protein; Provisional
Probab=99.04 E-value=1.2e-09 Score=108.94 Aligned_cols=141 Identities=13% Similarity=0.150 Sum_probs=80.7
Q ss_pred ccccccccccccCCCCCchhHHHHHHHHHHHhhhhCCC---CCCCeEEEEEcCCCCcHHHHHHHHHHHh----CCceEEe
Q 012383 108 QGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPN---IKVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMM 180 (465)
Q Consensus 108 ~~~r~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~---~~~p~glLL~GPPGtGKT~LAraIA~el----g~~~i~v 180 (465)
..++..+|++...+.. +..+ +.+...+++|+.... .....+++||||||||||+|+.+||+++ |..++.+
T Consensus 76 ~~~~~~~F~nf~~~~~--~~~~-~~~~~~~~~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~ 152 (266)
T PRK06921 76 EAFRKLTFKNFKTEGK--PQAI-KDAYECAVEYVKDFEKIQESRKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYF 152 (266)
T ss_pred HHHHhhhhhcCccCCc--cHHH-HHHHHHHHHHHHHHHHhcccCCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEE
Confidence 4445567777654321 2222 234455666665221 1235789999999999999999999985 6777788
Q ss_pred cccccccCCCCChHHHHHHHHHHHHHHHH-hCCceEEEeccccc-ccCCCCCCcccchhhHHHHHHHHHhhcCCccccCC
Q 012383 181 SAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLP 258 (465)
Q Consensus 181 s~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~-~~~p~ILfIDEIDa-i~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~ 258 (465)
+..++... ++..|....+.+. -....+|+|||+.. +.+... .+......|+++++
T Consensus 153 ~~~~l~~~--------l~~~~~~~~~~~~~~~~~dlLiIDDl~~~~~g~e~-------~t~~~~~~lf~iin-------- 209 (266)
T PRK06921 153 PFVEGFGD--------LKDDFDLLEAKLNRMKKVEVLFIDDLFKPVNGKPR-------ATEWQIEQMYSVLN-------- 209 (266)
T ss_pred EHHHHHHH--------HHHHHHHHHHHHHHhcCCCEEEEeccccccCCCcc-------CCHHHHHHHHHHHH--------
Confidence 87665422 2223332222222 34568999999954 112210 11222345556666
Q ss_pred CccccCCCCCceEEEEeCCC
Q 012383 259 GMYNKEENPRVPIIVTGNDF 278 (465)
Q Consensus 259 g~~~~~~~~~V~VI~TTN~~ 278 (465)
. ....+.++|+|||.+
T Consensus 210 -~---R~~~~k~tIitsn~~ 225 (266)
T PRK06921 210 -Y---RYLNHKPILISSELT 225 (266)
T ss_pred -H---HHHCCCCEEEECCCC
Confidence 1 112345789999964
No 145
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.03 E-value=5.6e-09 Score=114.18 Aligned_cols=164 Identities=14% Similarity=0.150 Sum_probs=99.5
Q ss_pred ccccccCCCCCchhHHHHHHHHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCce------E-Ee------
Q 012383 114 NLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINP------I-MM------ 180 (465)
Q Consensus 114 ~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~------i-~v------ 180 (465)
+|+.++|..++ ....++.+.. -+.|..+|||||||+|||++|+++|+.+.+.- . .+
T Consensus 14 ~f~diiGqe~i---------v~~L~~~i~~--~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i 82 (563)
T PRK06647 14 DFNSLEGQDFV---------VETLKHSIES--NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSI 82 (563)
T ss_pred CHHHccCcHHH---------HHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHH
Confidence 45777776332 2233344432 24678999999999999999999999986531 0 00
Q ss_pred -cc--cccccCCCCC---hHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCcc
Q 012383 181 -SA--GELESGNAGE---PAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTC 254 (465)
Q Consensus 181 -s~--s~L~s~~~Ge---~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~ 254 (465)
.+ .++. ..-|. ....|+++.+.+...-..+...|+||||+|.+.. .. ...|+..++
T Consensus 83 ~~~~~~dv~-~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~------------~a-~naLLK~LE---- 144 (563)
T PRK06647 83 DNDNSLDVI-EIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSN------------SA-FNALLKTIE---- 144 (563)
T ss_pred HcCCCCCeE-EecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCH------------HH-HHHHHHhhc----
Confidence 00 0000 01111 2345555554431111145677999999986521 11 223444444
Q ss_pred ccCCCccccCCCCCceEEEEeCCCCCCChhhhcCCCceEEEe-CCCHHHHHHHHHHhccCCCCC
Q 012383 255 VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVA 317 (465)
Q Consensus 255 v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~-~P~~e~R~~Il~~~l~~~~v~ 317 (465)
+....+.+|++|+.+..|.++|+. |+..+-. .|+.++..++++..+...++.
T Consensus 145 ---------epp~~~vfI~~tte~~kL~~tI~S--Rc~~~~f~~l~~~el~~~L~~i~~~egi~ 197 (563)
T PRK06647 145 ---------EPPPYIVFIFATTEVHKLPATIKS--RCQHFNFRLLSLEKIYNMLKKVCLEDQIK 197 (563)
T ss_pred ---------cCCCCEEEEEecCChHHhHHHHHH--hceEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 344567888888889999999886 6665444 788888888888777655443
No 146
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.03 E-value=1.4e-09 Score=111.16 Aligned_cols=146 Identities=16% Similarity=0.187 Sum_probs=88.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhCCceEEeccccccc--CCCCChHHHHH----HHHHHHH-HHHHhCCceEEEecccc
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES--GNAGEPAKLIR----QRYREAA-DIIKKGKMCCLMINDLD 222 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s--~~~Ge~~k~Ir----~~F~~A~-~~i~~~~p~ILfIDEID 222 (465)
..+||.||||||||++|+++|..++.+|+.+.+..-.. ...|...-..+ ..|..-. -+..... +|+|+|||+
T Consensus 44 ~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~-~ill~DEIn 122 (329)
T COG0714 44 GHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVR-VILLLDEIN 122 (329)
T ss_pred CCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccc-eEEEEeccc
Confidence 57999999999999999999999999999987764321 12233211111 0010000 0000111 599999997
Q ss_pred cccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeC-----CCCCCChhhhcCCCceEEEe-
Q 012383 223 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGN-----DFSTLYAPLIRDGRMEKFYW- 296 (465)
Q Consensus 223 ai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN-----~~~~LD~ALlR~GRfd~~i~- 296 (465)
... ..++..|+..++ ...+.+++.....-....+||+|+| ....|++|+++ ||-..++
T Consensus 123 ra~-------------p~~q~aLl~~l~-e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~~v 186 (329)
T COG0714 123 RAP-------------PEVQNALLEALE-ERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLRIYV 186 (329)
T ss_pred cCC-------------HHHHHHHHHHHh-CcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEEEec
Confidence 532 334556666666 2233333332112235677888889 77789999998 8865566
Q ss_pred -CC-CHHHHHHHHHHhcc
Q 012383 297 -AP-TREDRIGVCKGIFR 312 (465)
Q Consensus 297 -~P-~~e~R~~Il~~~l~ 312 (465)
.| ..++...|+.....
T Consensus 187 ~yp~~~~e~~~i~~~~~~ 204 (329)
T COG0714 187 DYPDSEEEERIILARVGG 204 (329)
T ss_pred CCCCchHHHHHHHHhCcc
Confidence 66 55555555544443
No 147
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.02 E-value=7.9e-09 Score=118.15 Aligned_cols=140 Identities=14% Similarity=0.175 Sum_probs=89.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh---CCceEEecccccccC------------CCCChHHHHHHHHHHHHHHHHhCCce
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG------------NAGEPAKLIRQRYREAADIIKKGKMC 214 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~s~L~s~------------~~Ge~~k~Ir~~F~~A~~~i~~~~p~ 214 (465)
..+||+||||||||++|++||+.+ +.+++.++.+++... |+|... ...+..+ ++....+
T Consensus 599 ~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~---~g~l~~~---v~~~p~~ 672 (857)
T PRK10865 599 GSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEE---GGYLTEA---VRRRPYS 672 (857)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccch---hHHHHHH---HHhCCCC
Confidence 358999999999999999999986 446887777766422 222111 0112222 2344458
Q ss_pred EEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC----------------
Q 012383 215 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF---------------- 278 (465)
Q Consensus 215 ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~---------------- 278 (465)
||||||+|++- ..+...|++++++.... ++.-......+.+||+|||..
T Consensus 673 vLllDEieka~-------------~~v~~~Ll~ile~g~l~--d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~ 737 (857)
T PRK10865 673 VILLDEVEKAH-------------PDVFNILLQVLDDGRLT--DGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHM 737 (857)
T ss_pred eEEEeehhhCC-------------HHHHHHHHHHHhhCcee--cCCceEEeecccEEEEeCCcchHHHHHhccccchHHH
Confidence 99999997532 33556777788732211 111111234567899999973
Q ss_pred ---------CCCChhhhcCCCceEEEe--CCCHHHHHHHHHHhcc
Q 012383 279 ---------STLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFR 312 (465)
Q Consensus 279 ---------~~LD~ALlR~GRfd~~i~--~P~~e~R~~Il~~~l~ 312 (465)
..+.|+|+. |+|.++. +++.++...|++.++.
T Consensus 738 ~~~~~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L~ 780 (857)
T PRK10865 738 KELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQLQ 780 (857)
T ss_pred HHHHHHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHHH
Confidence 134567774 8977666 8888888888776653
No 148
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.02 E-value=3.2e-09 Score=120.93 Aligned_cols=111 Identities=15% Similarity=0.129 Sum_probs=70.3
Q ss_pred CCCeE-EEEEcCCCCcHHHHHHHHHHHh---CCceEEeccccccc-----C-------CCCChHHHHHHHHHHHHHHHHh
Q 012383 147 KVPLI-LGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELES-----G-------NAGEPAKLIRQRYREAADIIKK 210 (465)
Q Consensus 147 ~~p~g-lLL~GPPGtGKT~LAraIA~el---g~~~i~vs~s~L~s-----~-------~~Ge~~k~Ir~~F~~A~~~i~~ 210 (465)
..|.+ +||+||||||||++|+++|+.+ +.+++.++.+++.+ + |+|-.+. ..+.... +.
T Consensus 536 ~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~--~~l~~~~----~~ 609 (821)
T CHL00095 536 NRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEG--GQLTEAV----RK 609 (821)
T ss_pred CCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCcc--chHHHHH----Hh
Confidence 44544 7899999999999999999997 35788877776532 1 3332111 1122222 45
Q ss_pred CCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC
Q 012383 211 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF 278 (465)
Q Consensus 211 ~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~ 278 (465)
...+||+|||+|+.- ..+...|+++++.-...- +.-......+.++|+|||..
T Consensus 610 ~p~~VvllDeieka~-------------~~v~~~Llq~le~g~~~d--~~g~~v~~~~~i~I~Tsn~g 662 (821)
T CHL00095 610 KPYTVVLFDEIEKAH-------------PDIFNLLLQILDDGRLTD--SKGRTIDFKNTLIIMTSNLG 662 (821)
T ss_pred CCCeEEEECChhhCC-------------HHHHHHHHHHhccCceec--CCCcEEecCceEEEEeCCcc
Confidence 556999999998642 334567778888432111 11112334688999999964
No 149
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.01 E-value=4.7e-09 Score=115.72 Aligned_cols=171 Identities=15% Similarity=0.198 Sum_probs=101.9
Q ss_pred cccccccCCCCCchhHHHHHHHHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEE----------ecc
Q 012383 113 YNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM----------MSA 182 (465)
Q Consensus 113 ~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~----------vs~ 182 (465)
-+|+.++|. +.+....++.+.. -+.|.++|||||||||||++|+++|+.+.+.--. -.+
T Consensus 13 ~~f~eivGQ---------e~i~~~L~~~i~~--~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~C 81 (620)
T PRK14954 13 SKFADITAQ---------EHITHTIQNSLRM--DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPC 81 (620)
T ss_pred CCHHHhcCc---------HHHHHHHHHHHHc--CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCC
Confidence 356777776 3344445555543 3668899999999999999999999998773110 000
Q ss_pred c------------cc-ccCCCCC---hHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHH
Q 012383 183 G------------EL-ESGNAGE---PAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLM 246 (465)
Q Consensus 183 s------------~L-~s~~~Ge---~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll 246 (465)
+ .+ ...+.|. +...|+.+-+.....--.+...|+||||+|.+... -...|+
T Consensus 82 g~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~-------------a~naLL 148 (620)
T PRK14954 82 GECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTA-------------AFNAFL 148 (620)
T ss_pred ccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHH-------------HHHHHH
Confidence 0 00 0001121 13445555443310001445679999999876321 123455
Q ss_pred HhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhhcCCCceEEEe-CCCHHHHHHHHHHhccCCC--CChhHHH
Q 012383 247 NIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDN--VADDDIV 322 (465)
Q Consensus 247 ~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~-~P~~e~R~~Il~~~l~~~~--v~~~~la 322 (465)
..++ +....+.+|++|+++..|.++++. |+..+-. .++.++....+..++...+ ++.+.+.
T Consensus 149 K~LE-------------ePp~~tv~IL~t~~~~kLl~TI~S--Rc~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~ 212 (620)
T PRK14954 149 KTLE-------------EPPPHAIFIFATTELHKIPATIAS--RCQRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQ 212 (620)
T ss_pred HHHh-------------CCCCCeEEEEEeCChhhhhHHHHh--hceEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 5555 333456677777888999999887 4444333 7788888878877776554 5554333
No 150
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.00 E-value=5.5e-09 Score=115.49 Aligned_cols=163 Identities=15% Similarity=0.235 Sum_probs=94.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHh----------CCceEEecccccc-------cCCCCChHHHHHHHHHHHHH-----
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE-------SGNAGEPAKLIRQRYREAAD----- 206 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~el----------g~~~i~vs~s~L~-------s~~~Ge~~k~Ir~~F~~A~~----- 206 (465)
|..++|+||||||||++|+++++.. +.+|+.+++..+. ..+.|.... ..+..+..
T Consensus 175 ~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~llg~~~~---~~~~~a~~~l~~~ 251 (615)
T TIGR02903 175 PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSVHD---PIYQGARRDLAET 251 (615)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHhcCCccH---HHHHHHHHHHHHc
Confidence 5679999999999999999998765 3468888876552 112221110 11111111
Q ss_pred --------HHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccc---------------c
Q 012383 207 --------IIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYN---------------K 263 (465)
Q Consensus 207 --------~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~---------------~ 263 (465)
.+......+|||||++.+.. ..+..|+.++++.+.....+.+. .
T Consensus 252 gl~~~~~g~v~~asgGvL~LDEi~~Ld~-------------~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~ 318 (615)
T TIGR02903 252 GVPEPKTGLVTDAHGGVLFIDEIGELDP-------------LLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEE 318 (615)
T ss_pred CCCchhcCchhhcCCCeEEEeccccCCH-------------HHHHHHHHHHhhCeEEeecceeccCCcccchhhhhhccc
Confidence 11123456999999976532 22334555554322100011110 0
Q ss_pred CCCCCceEEE-EeCCCCCCChhhhcCCCceEEEe-CCCHHHHHHHHHHhccCCC--CChhHHHHHhcCCCc
Q 012383 264 EENPRVPIIV-TGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDN--VADDDIVKLVDTFPG 330 (465)
Q Consensus 264 ~~~~~V~VI~-TTN~~~~LD~ALlR~GRfd~~i~-~P~~e~R~~Il~~~l~~~~--v~~~~la~lt~gfsg 330 (465)
.....+.+|+ |||.++.++++|++ ||..+.. .++.+++.+|++.++...+ ++. ++.++...|+.
T Consensus 319 ~~~~~~VLI~aTt~~~~~l~~aLrS--R~~~i~~~pls~edi~~Il~~~a~~~~v~ls~-eal~~L~~ys~ 386 (615)
T TIGR02903 319 GAPADFVLIGATTRDPEEINPALRS--RCAEVFFEPLTPEDIALIVLNAAEKINVHLAA-GVEELIARYTI 386 (615)
T ss_pred CccceEEEEEeccccccccCHHHHh--ceeEEEeCCCCHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHCCC
Confidence 1122344444 56778899999876 8887666 7789999999998887654 333 34444444543
No 151
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.00 E-value=6e-09 Score=119.17 Aligned_cols=145 Identities=14% Similarity=0.170 Sum_probs=91.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEecccccccC-----CCCChHHHH----HHHHHHHHHHHHhCCce
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG-----NAGEPAKLI----RQRYREAADIIKKGKMC 214 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~s~L~s~-----~~Ge~~k~I----r~~F~~A~~~i~~~~p~ 214 (465)
+|...+||+||||||||++|+++|..+ +.+++.++.+++.+. .+|.+...+ ...+..+ ++....+
T Consensus 593 ~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~~g~l~~~---v~~~p~~ 669 (852)
T TIGR03346 593 RPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEA---VRRKPYS 669 (852)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCCCCccCcccccHHHHH---HHcCCCc
Confidence 344568999999999999999999986 457888887765322 222111100 0112111 2455567
Q ss_pred EEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCC--------------
Q 012383 215 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFST-------------- 280 (465)
Q Consensus 215 ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~-------------- 280 (465)
||||||||+.- ..+...|++++++.... ++.-......+.+||+|||....
T Consensus 670 vlllDeieka~-------------~~v~~~Ll~~l~~g~l~--d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~ 734 (852)
T TIGR03346 670 VVLFDEVEKAH-------------PDVFNVLLQVLDDGRLT--DGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEM 734 (852)
T ss_pred EEEEeccccCC-------------HHHHHHHHHHHhcCcee--cCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHH
Confidence 99999998542 33456777888743211 11111123467889999998322
Q ss_pred -----------CChhhhcCCCceEEEe--CCCHHHHHHHHHHhc
Q 012383 281 -----------LYAPLIRDGRMEKFYW--APTREDRIGVCKGIF 311 (465)
Q Consensus 281 -----------LD~ALlR~GRfd~~i~--~P~~e~R~~Il~~~l 311 (465)
+.|.|+ +|+|.++. +++.++..+|+...+
T Consensus 735 ~~~~~~~~~~~F~pel~--~Rid~IivF~PL~~e~l~~I~~l~L 776 (852)
T TIGR03346 735 REAVMEVLRAHFRPEFL--NRIDEIVVFHPLGREQIARIVEIQL 776 (852)
T ss_pred HHHHHHHHHhhcCHHHh--cCcCeEEecCCcCHHHHHHHHHHHH
Confidence 345565 48987776 888899899876665
No 152
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.99 E-value=5.7e-09 Score=114.75 Aligned_cols=173 Identities=11% Similarity=0.149 Sum_probs=100.1
Q ss_pred cccccccCCCCCchhHHHHHHHHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEe---cc-------
Q 012383 113 YNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM---SA------- 182 (465)
Q Consensus 113 ~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~v---s~------- 182 (465)
-+|+.++|. ..+....++.+... +.+..+|||||||+|||++|+++|+.+++..-.- .+
T Consensus 13 ~~~~eiiGq---------~~~~~~L~~~i~~~--~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~ 81 (585)
T PRK14950 13 QTFAELVGQ---------EHVVQTLRNAIAEG--RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCR 81 (585)
T ss_pred CCHHHhcCC---------HHHHHHHHHHHHhC--CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHH
Confidence 355777776 22333334444332 4577899999999999999999999986422100 00
Q ss_pred -------cccc--cCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCc
Q 012383 183 -------GELE--SGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT 253 (465)
Q Consensus 183 -------s~L~--s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~ 253 (465)
.++. +....-....+|++.+.+...-......||||||+|.+.. ... ..|+..++
T Consensus 82 ~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~------------~a~-naLLk~LE--- 145 (585)
T PRK14950 82 AIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLST------------AAF-NALLKTLE--- 145 (585)
T ss_pred HHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH------------HHH-HHHHHHHh---
Confidence 0010 0000112334555544331100134567999999986532 112 23445555
Q ss_pred cccCCCccccCCCCCceEEEEeCCCCCCChhhhcCCCceEEEe-CCCHHHHHHHHHHhccCCC--CChhHHHHH
Q 012383 254 CVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDN--VADDDIVKL 324 (465)
Q Consensus 254 ~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~-~P~~e~R~~Il~~~l~~~~--v~~~~la~l 324 (465)
+....+.+|++|+..+.+.+.++. |+.++.. .++..+...++..++...+ ++.+.+..+
T Consensus 146 ----------epp~~tv~Il~t~~~~kll~tI~S--R~~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~L 207 (585)
T PRK14950 146 ----------EPPPHAIFILATTEVHKVPATILS--RCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAI 207 (585)
T ss_pred ----------cCCCCeEEEEEeCChhhhhHHHHh--ccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 223456778888888888888875 5555444 7888888888877766554 444433333
No 153
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.98 E-value=1.4e-08 Score=110.09 Aligned_cols=168 Identities=15% Similarity=0.174 Sum_probs=101.8
Q ss_pred ccccccCCCCCchhHHHHHHHHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCc-----------------
Q 012383 114 NLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN----------------- 176 (465)
Q Consensus 114 ~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~----------------- 176 (465)
+|+.++|..++ ....++.+... +.|..+|||||||+|||++|+++|+.+...
T Consensus 12 ~fdeiiGqe~v---------~~~L~~~I~~g--rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~ 80 (535)
T PRK08451 12 HFDELIGQESV---------SKTLSLALDNN--RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSA 80 (535)
T ss_pred CHHHccCcHHH---------HHHHHHHHHcC--CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHH
Confidence 45777776222 33333444322 567889999999999999999999997421
Q ss_pred -------eEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhh
Q 012383 177 -------PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIA 249 (465)
Q Consensus 177 -------~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~ll 249 (465)
++.++++. ......||++.......-..+...|+||||+|.+.. .....|+..+
T Consensus 81 ~~~~h~dv~eldaas------~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~-------------~A~NALLK~L 141 (535)
T PRK08451 81 LENRHIDIIEMDAAS------NRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTK-------------EAFNALLKTL 141 (535)
T ss_pred hhcCCCeEEEecccc------ccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH-------------HHHHHHHHHH
Confidence 11121110 011345555554431000023456999999976532 1223455555
Q ss_pred cCCccccCCCccccCCCCCceEEEEeCCCCCCChhhhcCCCceEEEe-CCCHHHHHHHHHHhccCCCC--ChhHHHHHhc
Q 012383 250 DNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNV--ADDDIVKLVD 326 (465)
Q Consensus 250 D~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~-~P~~e~R~~Il~~~l~~~~v--~~~~la~lt~ 326 (465)
. +....+.+|.+|+++..|.++++. |+.++.. .++.++-.+.++..+...++ +.+.+..++.
T Consensus 142 E-------------Epp~~t~FIL~ttd~~kL~~tI~S--Rc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~ 206 (535)
T PRK08451 142 E-------------EPPSYVKFILATTDPLKLPATILS--RTQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILAR 206 (535)
T ss_pred h-------------hcCCceEEEEEECChhhCchHHHh--hceeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 5 334556788888999999999887 6555444 77888888888877776655 3444444433
No 154
>PHA02244 ATPase-like protein
Probab=98.97 E-value=3.1e-09 Score=110.06 Aligned_cols=136 Identities=16% Similarity=0.176 Sum_probs=80.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHhCCceEEeccccccc---CCCCChHHHHHHHHHHHHHHHHhCCceEEEeccccccc
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES---GNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGA 225 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s---~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~ 225 (465)
...|||+||||||||++|+++|+.++.+++.++.-.-.. ++...........|-+| .....+|||||||.+.
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A-----~~~GgvLiLDEId~a~ 193 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEA-----FKKGGLFFIDEIDASI 193 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHH-----hhcCCEEEEeCcCcCC
Confidence 346999999999999999999999999999887421010 11111111111233333 2356799999998643
Q ss_pred CCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC-----------CCCChhhhcCCCceEE
Q 012383 226 GRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF-----------STLYAPLIRDGRMEKF 294 (465)
Q Consensus 226 ~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~-----------~~LD~ALlR~GRfd~~ 294 (465)
.. +...|..++++-. +.+.+.. .....+..+|+|+|.+ ..|++|++. ||-.+
T Consensus 194 p~-------------vq~~L~~lLd~r~-l~l~g~~-i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RFv~I 256 (383)
T PHA02244 194 PE-------------ALIIINSAIANKF-FDFADER-VTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RFAPI 256 (383)
T ss_pred HH-------------HHHHHHHHhccCe-EEecCcE-EecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hcEEe
Confidence 22 1223334444211 1111110 0123678999999973 678999986 88654
Q ss_pred Ee-CCCHHHHHHHH
Q 012383 295 YW-APTREDRIGVC 307 (465)
Q Consensus 295 i~-~P~~e~R~~Il 307 (465)
.. .|+ +.-..|.
T Consensus 257 ~~dyp~-~~E~~i~ 269 (383)
T PHA02244 257 EFDYDE-KIEHLIS 269 (383)
T ss_pred eCCCCc-HHHHHHh
Confidence 44 666 3333444
No 155
>PRK08181 transposase; Validated
Probab=98.96 E-value=1.5e-09 Score=108.42 Aligned_cols=100 Identities=19% Similarity=0.183 Sum_probs=64.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHH---hCCceEEecccccccCCCCC-hHHHHHHHHHHHHHHHHhCCceEEEecccccc
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELESGNAGE-PAKLIRQRYREAADIIKKGKMCCLMINDLDAG 224 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~e---lg~~~i~vs~s~L~s~~~Ge-~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai 224 (465)
..+++||||||||||+||.+++++ .|..++.++..+|....... ........++ .-.++.+|+|||++.+
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~------~l~~~dLLIIDDlg~~ 179 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIA------KLDKFDLLILDDLAYV 179 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHH------HHhcCCEEEEeccccc
Confidence 468999999999999999999976 37788888888776432100 0000111122 1345789999999765
Q ss_pred cCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC
Q 012383 225 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF 278 (465)
Q Consensus 225 ~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~ 278 (465)
..+ ......|+++++ .. ..+-++|+|||.+
T Consensus 180 ~~~-----------~~~~~~Lf~lin--------~R-----~~~~s~IiTSN~~ 209 (269)
T PRK08181 180 TKD-----------QAETSVLFELIS--------AR-----YERRSILITANQP 209 (269)
T ss_pred cCC-----------HHHHHHHHHHHH--------HH-----HhCCCEEEEcCCC
Confidence 432 122345666666 11 1224799999986
No 156
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.93 E-value=5.2e-09 Score=104.91 Aligned_cols=128 Identities=16% Similarity=0.243 Sum_probs=82.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHhC------------------------CceEEecccccccCCCCChHHHHHHHHH
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKMG------------------------INPIMMSAGELESGNAGEPAKLIRQRYR 202 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~elg------------------------~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~ 202 (465)
+.|..+||+||||||||++|.++|+++. -.++.++++...... -....++++-+
T Consensus 22 ~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~--i~~~~vr~~~~ 99 (325)
T COG0470 22 RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKID--IIVEQVRELAE 99 (325)
T ss_pred CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCc--chHHHHHHHHH
Confidence 4566899999999999999999999987 356666666544221 11222333322
Q ss_pred HHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCC
Q 012383 203 EAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLY 282 (465)
Q Consensus 203 ~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD 282 (465)
.....-..+..-|+||||+|.+.... .+.|+..+. ++..+.++|.+||+++.|-
T Consensus 100 ~~~~~~~~~~~kviiidead~mt~~A-------------~nallk~lE-------------ep~~~~~~il~~n~~~~il 153 (325)
T COG0470 100 FLSESPLEGGYKVVIIDEADKLTEDA-------------ANALLKTLE-------------EPPKNTRFILITNDPSKIL 153 (325)
T ss_pred HhccCCCCCCceEEEeCcHHHHhHHH-------------HHHHHHHhc-------------cCCCCeEEEEEcCChhhcc
Confidence 22000012567899999999875421 123333333 5567889999999999999
Q ss_pred hhhhcCCCceEEEeC-CCHHHHH
Q 012383 283 APLIRDGRMEKFYWA-PTREDRI 304 (465)
Q Consensus 283 ~ALlR~GRfd~~i~~-P~~e~R~ 304 (465)
+.+.. |+..+... |+...+.
T Consensus 154 ~tI~S--Rc~~i~f~~~~~~~~i 174 (325)
T COG0470 154 PTIRS--RCQRIRFKPPSRLEAI 174 (325)
T ss_pred chhhh--cceeeecCCchHHHHH
Confidence 98886 66665553 4443333
No 157
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.93 E-value=2.8e-08 Score=102.07 Aligned_cols=159 Identities=14% Similarity=0.152 Sum_probs=100.5
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEE----------------eccccc---ccCCCC--ChHHHHHHHHHHH
Q 012383 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM----------------MSAGEL---ESGNAG--EPAKLIRQRYREA 204 (465)
Q Consensus 146 ~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~----------------vs~s~L---~s~~~G--e~~k~Ir~~F~~A 204 (465)
-+.|.++||+||+|+|||++|+++|+.+.+.--. -+.+++ .....+ -+...||++-+.+
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~ 98 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFV 98 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHH
Confidence 4678899999999999999999999997552100 000111 000111 1245677766555
Q ss_pred HHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChh
Q 012383 205 ADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAP 284 (465)
Q Consensus 205 ~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~A 284 (465)
...-..+...|++|||+|.+-. .-...|++.++ ++..++.+|.+|++++.|.|.
T Consensus 99 ~~~~~~~~~kv~iI~~a~~m~~-------------~aaNaLLK~LE-------------EPp~~~~fiL~t~~~~~ll~T 152 (328)
T PRK05707 99 VQTAQLGGRKVVLIEPAEAMNR-------------NAANALLKSLE-------------EPSGDTVLLLISHQPSRLLPT 152 (328)
T ss_pred hhccccCCCeEEEECChhhCCH-------------HHHHHHHHHHh-------------CCCCCeEEEEEECChhhCcHH
Confidence 2222245677999999987532 12234555555 555778999999999999999
Q ss_pred hhcCCCceEEEe-CCCHHHHHHHHHHhccCCCCChh---HHHHHhcCCCchhhH
Q 012383 285 LIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVADD---DIVKLVDTFPGQSID 334 (465)
Q Consensus 285 LlR~GRfd~~i~-~P~~e~R~~Il~~~l~~~~v~~~---~la~lt~gfsgadld 334 (465)
++. |+..+.. .|+.++-.+.+..... ....+ .+..++.|-++..++
T Consensus 153 I~S--Rc~~~~~~~~~~~~~~~~L~~~~~--~~~~~~~~~~l~la~Gsp~~A~~ 202 (328)
T PRK05707 153 IKS--RCQQQACPLPSNEESLQWLQQALP--ESDERERIELLTLAGGSPLRALQ 202 (328)
T ss_pred HHh--hceeeeCCCcCHHHHHHHHHHhcc--cCChHHHHHHHHHcCCCHHHHHH
Confidence 986 7777555 8888888888766542 22332 444555554444443
No 158
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.91 E-value=8.8e-09 Score=104.77 Aligned_cols=68 Identities=19% Similarity=0.301 Sum_probs=47.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEecccccccCCCCChHHHHHHHHHH--HHHHHH-hCCceEEEeccc
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYRE--AADIIK-KGKMCCLMINDL 221 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~--A~~~i~-~~~p~ILfIDEI 221 (465)
..+|++||||||||||+|+.|+|+++ |..+..+..++++... +..|.. ..+.+. -....||+||||
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~l--------k~~~~~~~~~~~l~~l~~~dlLiIDDi 226 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIREL--------KNSISDGSVKEKIDAVKEAPVLMLDDI 226 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHH--------HHHHhcCcHHHHHHHhcCCCEEEEecC
Confidence 45899999999999999999999997 7788888877765322 111111 011112 345689999999
Q ss_pred cc
Q 012383 222 DA 223 (465)
Q Consensus 222 Da 223 (465)
.+
T Consensus 227 G~ 228 (306)
T PRK08939 227 GA 228 (306)
T ss_pred CC
Confidence 54
No 159
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=3.6e-08 Score=102.65 Aligned_cols=167 Identities=18% Similarity=0.260 Sum_probs=103.7
Q ss_pred cCCCCCchhH--HHHHHHHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCc-----eEEecccccccC---
Q 012383 119 IDGLYIAPAF--MDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----PIMMSAGELESG--- 188 (465)
Q Consensus 119 ~~~~~i~~~~--~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~-----~i~vs~s~L~s~--- 188 (465)
....|+|+++ .|..+.+++.-+........|..+++|||||||||.+++.++.++.-. ++++++-.+-+.
T Consensus 10 l~~~~iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i 89 (366)
T COG1474 10 LLEDYIPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQV 89 (366)
T ss_pred cCCCCCcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHH
Confidence 3345666653 222333333333332222345569999999999999999999997443 788887655322
Q ss_pred ------------CCCChHHHHHHHHHHHHHHHH-hCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccc
Q 012383 189 ------------NAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCV 255 (465)
Q Consensus 189 ------------~~Ge~~k~Ir~~F~~A~~~i~-~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v 255 (465)
..|-+. .+.|+...+.+. .....||++||+|.+..+.+ ..|++|+..++
T Consensus 90 ~~~i~~~~~~~p~~g~~~---~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~-------------~~LY~L~r~~~-- 151 (366)
T COG1474 90 LSKILNKLGKVPLTGDSS---LEILKRLYDNLSKKGKTVIVILDEVDALVDKDG-------------EVLYSLLRAPG-- 151 (366)
T ss_pred HHHHHHHcCCCCCCCCch---HHHHHHHHHHHHhcCCeEEEEEcchhhhccccc-------------hHHHHHHhhcc--
Confidence 112222 233333333334 56788999999999987643 34555555111
Q ss_pred cCCCccccCCCCCceEEEEeCCCC---CCChhhhcCCCceEEEe-CCCHHHHHHHHHHhc
Q 012383 256 QLPGMYNKEENPRVPIIVTGNDFS---TLYAPLIRDGRMEKFYW-APTREDRIGVCKGIF 311 (465)
Q Consensus 256 ~l~g~~~~~~~~~V~VI~TTN~~~---~LD~ALlR~GRfd~~i~-~P~~e~R~~Il~~~l 311 (465)
....+|.+|+.+|..+ .||+-+...-......+ +.+.++...|++.-.
T Consensus 152 --------~~~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~ 203 (366)
T COG1474 152 --------ENKVKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERV 203 (366)
T ss_pred --------ccceeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHH
Confidence 1257789999999874 67888765433334333 779999999976654
No 160
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.90 E-value=4.4e-08 Score=101.95 Aligned_cols=158 Identities=15% Similarity=0.149 Sum_probs=96.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEE-------------ec-------------cccc--ccC-CCCC-----
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIM-------------MS-------------AGEL--ESG-NAGE----- 192 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~-------------vs-------------~s~L--~s~-~~Ge----- 192 (465)
+.|..+||+||+|+||+++|.++|+.+-+.--. +. .+++ +.. +.++
T Consensus 39 rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~ 118 (365)
T PRK07471 39 RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLR 118 (365)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHHccCCCCeEEEeccccccccccc
Confidence 678899999999999999999999997432100 00 0011 000 0011
Q ss_pred ---hHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCc
Q 012383 193 ---PAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRV 269 (465)
Q Consensus 193 ---~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V 269 (465)
....||++-+.+......+.+.|++|||+|.+-. .....|+..+. +...++
T Consensus 119 ~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~-------------~aanaLLK~LE-------------epp~~~ 172 (365)
T PRK07471 119 TVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNA-------------NAANALLKVLE-------------EPPARS 172 (365)
T ss_pred ccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCH-------------HHHHHHHHHHh-------------cCCCCe
Confidence 1234555544432111256788999999986521 12234555555 444667
Q ss_pred eEEEEeCCCCCCChhhhcCCCceEEEe-CCCHHHHHHHHHHhccCCCCCh---hHHHHHhcCCCchhhH
Q 012383 270 PIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVAD---DDIVKLVDTFPGQSID 334 (465)
Q Consensus 270 ~VI~TTN~~~~LD~ALlR~GRfd~~i~-~P~~e~R~~Il~~~l~~~~v~~---~~la~lt~gfsgadld 334 (465)
.+|++|++++.+.+.++. |+.++-. .|+.++-.+++...... ... ..+..++.|-++..+.
T Consensus 173 ~~IL~t~~~~~llpti~S--Rc~~i~l~~l~~~~i~~~L~~~~~~--~~~~~~~~l~~~s~Gsp~~Al~ 237 (365)
T PRK07471 173 LFLLVSHAPARLLPTIRS--RCRKLRLRPLAPEDVIDALAAAGPD--LPDDPRAALAALAEGSVGRALR 237 (365)
T ss_pred EEEEEECCchhchHHhhc--cceEEECCCCCHHHHHHHHHHhccc--CCHHHHHHHHHHcCCCHHHHHH
Confidence 888999999999888765 7776666 88999999888776532 222 2455555554444333
No 161
>PRK09087 hypothetical protein; Validated
Probab=98.89 E-value=2.3e-08 Score=97.42 Aligned_cols=133 Identities=17% Similarity=0.209 Sum_probs=79.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCC
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMG 229 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~ 229 (465)
.-++||||+|||||+|++++++..++. +++...+. ...+... . ..+|+|||+|.+..
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~--~i~~~~~~-----------~~~~~~~----~---~~~l~iDDi~~~~~--- 101 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDAL--LIHPNEIG-----------SDAANAA----A---EGPVLIEDIDAGGF--- 101 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCE--EecHHHcc-----------hHHHHhh----h---cCeEEEECCCCCCC---
Confidence 458999999999999999999887655 33332221 1111111 1 24899999986521
Q ss_pred CCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCC-CC---CCChhhhcCCCce--EEEe--CCCHH
Q 012383 230 GTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND-FS---TLYAPLIRDGRME--KFYW--APTRE 301 (465)
Q Consensus 230 ~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~-~~---~LD~ALlR~GRfd--~~i~--~P~~e 301 (465)
++ ..|+.+++ .. ...+..+|+|++. |. ...+.|+. |+. ..+. .|+.+
T Consensus 102 --~~---------~~lf~l~n--------~~----~~~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e 156 (226)
T PRK09087 102 --DE---------TGLFHLIN--------SV----RQAGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDA 156 (226)
T ss_pred --CH---------HHHHHHHH--------HH----HhCCCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHH
Confidence 11 12333433 11 1123456666664 33 23566764 553 3444 99999
Q ss_pred HHHHHHHHhccCCC--CChhHHHHHhcCCCc
Q 012383 302 DRIGVCKGIFRNDN--VADDDIVKLVDTFPG 330 (465)
Q Consensus 302 ~R~~Il~~~l~~~~--v~~~~la~lt~gfsg 330 (465)
+|.+|++.++...+ ++++.+.-++..+++
T Consensus 157 ~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r 187 (226)
T PRK09087 157 LLSQVIFKLFADRQLYVDPHVVYYLVSRMER 187 (226)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhhh
Confidence 99999999987654 455555555555443
No 162
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=1.5e-08 Score=107.62 Aligned_cols=139 Identities=11% Similarity=0.135 Sum_probs=90.6
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEe-cccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccc
Q 012383 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM-SAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 222 (465)
Q Consensus 144 ~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~v-s~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEID 222 (465)
....+-..+||+||||+|||.||..+|...+.+|+.+ |+.++....--..-..|+..|+.| .++..+||++|||+
T Consensus 533 s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DA----YkS~lsiivvDdiE 608 (744)
T KOG0741|consen 533 SERSPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDA----YKSPLSIIVVDDIE 608 (744)
T ss_pred cccCcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHh----hcCcceEEEEcchh
Confidence 3444557999999999999999999999999999984 444443211112234689999999 89999999999999
Q ss_pred cccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChh-hhcCCCceEEEeCCCHH
Q 012383 223 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAP-LIRDGRMEKFYWAPTRE 301 (465)
Q Consensus 223 ai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~A-LlR~GRfd~~i~~P~~e 301 (465)
.+...-. -..+..|-.+ ++|+-++.. . .....+.+|++||.+.+.|-.- ++- -|+..+..|+..
T Consensus 609 rLiD~vp--IGPRfSN~vl-QaL~VllK~--------~--ppkg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl~ 673 (744)
T KOG0741|consen 609 RLLDYVP--IGPRFSNLVL-QALLVLLKK--------Q--PPKGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVPNLT 673 (744)
T ss_pred hhhcccc--cCchhhHHHH-HHHHHHhcc--------C--CCCCceEEEEecccHHHHHHHcCHHH--hhhheeecCccC
Confidence 8854321 1123334444 466666551 1 0223577888888776543322 221 455566655443
No 163
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=6.5e-08 Score=98.37 Aligned_cols=90 Identities=23% Similarity=0.262 Sum_probs=65.9
Q ss_pred CceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEe----CCCCCCChhhhc
Q 012383 212 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTG----NDFSTLYAPLIR 287 (465)
Q Consensus 212 ~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TT----N~~~~LD~ALlR 287 (465)
+..||||||||+++.+.+ .....+..+-++.=|+-|+...+-.. -|+......+++|++. ..|+.|-|.|.
T Consensus 250 ~~GIvFIDEIDKIa~~~~-~g~~dvSREGVQRDlLPlvEGstV~T---KyG~VkTdHILFIasGAFh~sKPSDLiPELQ- 324 (444)
T COG1220 250 QNGIVFIDEIDKIAKRGG-SGGPDVSREGVQRDLLPLVEGSTVST---KYGPVKTDHILFIASGAFHVAKPSDLIPELQ- 324 (444)
T ss_pred hcCeEEEehhhHHHhcCC-CCCCCcchhhhcccccccccCceeec---cccccccceEEEEecCceecCChhhcChhhc-
Confidence 356999999999998764 22236777778877777777444333 2333667788999876 46888999886
Q ss_pred CCCceEEEe--CCCHHHHHHHH
Q 012383 288 DGRMEKFYW--APTREDRIGVC 307 (465)
Q Consensus 288 ~GRfd~~i~--~P~~e~R~~Il 307 (465)
|||-..++ ..+.++-..||
T Consensus 325 -GRfPIRVEL~~Lt~~Df~rIL 345 (444)
T COG1220 325 -GRFPIRVELDALTKEDFERIL 345 (444)
T ss_pred -CCCceEEEcccCCHHHHHHHH
Confidence 89998888 77888887774
No 164
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.84 E-value=8e-08 Score=106.25 Aligned_cols=159 Identities=11% Similarity=0.160 Sum_probs=98.6
Q ss_pred ccccccCCCCCchhHHHHHHHHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCc-----------------
Q 012383 114 NLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN----------------- 176 (465)
Q Consensus 114 ~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~----------------- 176 (465)
+|+.++|. ..+....++.+.. -+.|..+|||||+|+|||++|+++|+.+.+.
T Consensus 15 ~f~~viGq---------~~~~~~L~~~i~~--~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~ 83 (614)
T PRK14971 15 TFESVVGQ---------EALTTTLKNAIAT--NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVA 83 (614)
T ss_pred CHHHhcCc---------HHHHHHHHHHHHc--CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHH
Confidence 45677776 2223333344332 2568899999999999999999999997642
Q ss_pred --------eEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHh
Q 012383 177 --------PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 248 (465)
Q Consensus 177 --------~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~l 248 (465)
++.+++. -..+...|+.+...+...--.+...|+||||+|.+.. .....|+..
T Consensus 84 ~~~~~~~n~~~ld~~------~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~-------------~a~naLLK~ 144 (614)
T PRK14971 84 FNEQRSYNIHELDAA------SNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ-------------AAFNAFLKT 144 (614)
T ss_pred HhcCCCCceEEeccc------ccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCH-------------HHHHHHHHH
Confidence 1112111 0112345666655541111134456999999987622 112345555
Q ss_pred hcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhhcCCCceEEEe-CCCHHHHHHHHHHhccCCCCC
Q 012383 249 ADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVA 317 (465)
Q Consensus 249 lD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~-~P~~e~R~~Il~~~l~~~~v~ 317 (465)
++ +......+|++|+....|-++|+. |+..+-. .++.++....++.++...++.
T Consensus 145 LE-------------epp~~tifIL~tt~~~kIl~tI~S--Rc~iv~f~~ls~~ei~~~L~~ia~~egi~ 199 (614)
T PRK14971 145 LE-------------EPPSYAIFILATTEKHKILPTILS--RCQIFDFNRIQVADIVNHLQYVASKEGIT 199 (614)
T ss_pred Hh-------------CCCCCeEEEEEeCCchhchHHHHh--hhheeecCCCCHHHHHHHHHHHHHHcCCC
Confidence 55 333455677777778899999887 5544434 788888888888877766554
No 165
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=2.3e-08 Score=111.69 Aligned_cols=146 Identities=15% Similarity=0.186 Sum_probs=93.6
Q ss_pred CCCCCCCe-EEEEEcCCCCcHHHHHHHHHHHhC---CceEEecccccccC------------CCCChHHHHHHHHHHHHH
Q 012383 143 LPNIKVPL-ILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGELESG------------NAGEPAKLIRQRYREAAD 206 (465)
Q Consensus 143 ~~~~~~p~-glLL~GPPGtGKT~LAraIA~elg---~~~i~vs~s~L~s~------------~~Ge~~k~Ir~~F~~A~~ 206 (465)
+..-+.|. ..||.||.|+|||.||+++|..+. ..++.++.|++..+ |+|-.+. ..+.+|
T Consensus 514 L~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeG---G~LTEa-- 588 (786)
T COG0542 514 LGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEG---GQLTEA-- 588 (786)
T ss_pred CCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceeccc---cchhHh--
Confidence 33444555 456689999999999999999987 78999999988644 5542211 122222
Q ss_pred HHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC-------
Q 012383 207 IIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS------- 279 (465)
Q Consensus 207 ~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~------- 279 (465)
+++...|||+||||++ .+ .-+..+|++++|+-... |+.-+...-.+.+||+|||--.
T Consensus 589 -VRr~PySViLlDEIEK--------AH-----pdV~nilLQVlDdGrLT--D~~Gr~VdFrNtiIImTSN~Gs~~i~~~~ 652 (786)
T COG0542 589 -VRRKPYSVILLDEIEK--------AH-----PDVFNLLLQVLDDGRLT--DGQGRTVDFRNTIIIMTSNAGSEEILRDA 652 (786)
T ss_pred -hhcCCCeEEEechhhh--------cC-----HHHHHHHHHHhcCCeee--cCCCCEEecceeEEEEecccchHHHHhhc
Confidence 3566789999999975 23 44566788888843211 1221223447789999999431
Q ss_pred ---------------------CCChhhhcCCCceEEEe--CCCHHHHHHHHHHhc
Q 012383 280 ---------------------TLYAPLIRDGRMEKFYW--APTREDRIGVCKGIF 311 (465)
Q Consensus 280 ---------------------~LD~ALlR~GRfd~~i~--~P~~e~R~~Il~~~l 311 (465)
.+.|+|+. |+|.+|. ..+.+...+|+..++
T Consensus 653 ~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~L 705 (786)
T COG0542 653 DGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQL 705 (786)
T ss_pred cccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHHHH
Confidence 12344443 6775444 556666666665555
No 166
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.83 E-value=1.7e-07 Score=95.23 Aligned_cols=149 Identities=12% Similarity=0.119 Sum_probs=91.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccc--cCCCCC--hHHHHHHHHHHHHHHHHhCCceEEEecccc
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE--SGNAGE--PAKLIRQRYREAADIIKKGKMCCLMINDLD 222 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~--s~~~Ge--~~k~Ir~~F~~A~~~i~~~~p~ILfIDEID 222 (465)
+.|..+|||||+|+|||++|+++|+.+-+....-+.+++. ..+.|. +...||++-+.+...-..+...|++|||+|
T Consensus 24 ~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad 103 (313)
T PRK05564 24 RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSE 103 (313)
T ss_pred CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHHHHHHHHhcCcccCCceEEEEechh
Confidence 5678999999999999999999999864321111111110 000121 223466655543111124566799999997
Q ss_pred cccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhhcCCCceEEEe-CCCHH
Q 012383 223 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTRE 301 (465)
Q Consensus 223 ai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~-~P~~e 301 (465)
.+.. .....|+..+. +..+++.+|.+|+.++.|.|.++. |+..+.. .|+.+
T Consensus 104 ~m~~-------------~a~naLLK~LE-------------epp~~t~~il~~~~~~~ll~TI~S--Rc~~~~~~~~~~~ 155 (313)
T PRK05564 104 KMTE-------------QAQNAFLKTIE-------------EPPKGVFIILLCENLEQILDTIKS--RCQIYKLNRLSKE 155 (313)
T ss_pred hcCH-------------HHHHHHHHHhc-------------CCCCCeEEEEEeCChHhCcHHHHh--hceeeeCCCcCHH
Confidence 6521 12234555555 445667888888899999999876 5544444 77888
Q ss_pred HHHHHHHHhccCCCCChhHHHHHh
Q 012383 302 DRIGVCKGIFRNDNVADDDIVKLV 325 (465)
Q Consensus 302 ~R~~Il~~~l~~~~v~~~~la~lt 325 (465)
+....+...+. +++.+.+..++
T Consensus 156 ~~~~~l~~~~~--~~~~~~~~~l~ 177 (313)
T PRK05564 156 EIEKFISYKYN--DIKEEEKKSAI 177 (313)
T ss_pred HHHHHHHHHhc--CCCHHHHHHHH
Confidence 88777766543 45555444443
No 167
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.82 E-value=2.5e-09 Score=100.51 Aligned_cols=102 Identities=19% Similarity=0.220 Sum_probs=59.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEecccccccCCCCCh-HHHHHHHHHHHHHHHHhCCceEEEecccc
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEP-AKLIRQRYREAADIIKKGKMCCLMINDLD 222 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~s~L~s~~~Ge~-~k~Ir~~F~~A~~~i~~~~p~ILfIDEID 222 (465)
+...+++|+||||||||+||.++++++ |..+..++.++|++...... .......++. -....+|+|||+.
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~------l~~~dlLilDDlG 118 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKR------LKRVDLLILDDLG 118 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHH------HHTSSCEEEETCT
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCc------cccccEecccccc
Confidence 346799999999999999999999884 88888888888754321110 0001112222 2345799999994
Q ss_pred cccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC
Q 012383 223 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF 278 (465)
Q Consensus 223 ai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~ 278 (465)
... .+......|+++++ .- ..+-++|+|||..
T Consensus 119 ~~~-----------~~~~~~~~l~~ii~--------~R-----~~~~~tIiTSN~~ 150 (178)
T PF01695_consen 119 YEP-----------LSEWEAELLFEIID--------ER-----YERKPTIITSNLS 150 (178)
T ss_dssp SS--------------HHHHHCTHHHHH--------HH-----HHT-EEEEEESS-
T ss_pred eee-----------ecccccccchhhhh--------Hh-----hcccCeEeeCCCc
Confidence 211 11223345666666 11 1234899999964
No 168
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.82 E-value=3.6e-08 Score=103.46 Aligned_cols=185 Identities=20% Similarity=0.247 Sum_probs=110.3
Q ss_pred ccccccccccccCCCCCchhHHHHHHHHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhC-----CceEEecc
Q 012383 108 QGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMG-----INPIMMSA 182 (465)
Q Consensus 108 ~~~r~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg-----~~~i~vs~ 182 (465)
.....|+|+|.+.+ + ..+....+++..-..+|- .-.-++||||.|.|||+|++|++++.. ..+++++.
T Consensus 79 ~l~~~ytFdnFv~g----~--~N~~A~aa~~~va~~~g~-~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~s 151 (408)
T COG0593 79 GLNPKYTFDNFVVG----P--SNRLAYAAAKAVAENPGG-AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTS 151 (408)
T ss_pred cCCCCCchhheeeC----C--chHHHHHHHHHHHhccCC-cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccH
Confidence 34567888886655 1 124456666777666654 334589999999999999999999952 34667777
Q ss_pred cccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccc
Q 012383 183 GELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYN 262 (465)
Q Consensus 183 s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~ 262 (465)
..+...++-.--..=-+-|++ ...-.+|+||||+.+.++.. ++ ..+..++..+.+
T Consensus 152 e~f~~~~v~a~~~~~~~~Fk~------~y~~dlllIDDiq~l~gk~~--~q-----eefFh~FN~l~~------------ 206 (408)
T COG0593 152 EDFTNDFVKALRDNEMEKFKE------KYSLDLLLIDDIQFLAGKER--TQ-----EEFFHTFNALLE------------ 206 (408)
T ss_pred HHHHHHHHHHHHhhhHHHHHH------hhccCeeeechHhHhcCChh--HH-----HHHHHHHHHHHh------------
Confidence 655433221100000012222 22557999999999887743 12 333333333322
Q ss_pred cCCCCCceEEEEeCC-CC---CCChhhhcCCCceE--EEe--CCCHHHHHHHHHHhccCCCCC--hhHHHHHhcCCCc
Q 012383 263 KEENPRVPIIVTGND-FS---TLYAPLIRDGRMEK--FYW--APTREDRIGVCKGIFRNDNVA--DDDIVKLVDTFPG 330 (465)
Q Consensus 263 ~~~~~~V~VI~TTN~-~~---~LD~ALlR~GRfd~--~i~--~P~~e~R~~Il~~~l~~~~v~--~~~la~lt~gfsg 330 (465)
.++ -||.|+.+ |. .+.+.|.. ||.. .+. .|+.+.|.+|++......++. .+.+.-++..++.
T Consensus 207 ---~~k-qIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~ 278 (408)
T COG0593 207 ---NGK-QIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDR 278 (408)
T ss_pred ---cCC-EEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhc
Confidence 222 56666654 33 34577775 6553 333 999999999999977665544 4444444444443
No 169
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.79 E-value=2.9e-07 Score=95.45 Aligned_cols=148 Identities=13% Similarity=0.083 Sum_probs=89.3
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHhCCce------EEe--cc--------------ccc--c-cCC-C--C-----C
Q 012383 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGINP------IMM--SA--------------GEL--E-SGN-A--G-----E 192 (465)
Q Consensus 146 ~~~p~glLL~GPPGtGKT~LAraIA~elg~~~------i~v--s~--------------s~L--~-s~~-~--G-----e 192 (465)
-+.|..+||+||+|+|||++|+.+|+.+.... ... .+ +++ + ..+ . | -
T Consensus 42 grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I 121 (351)
T PRK09112 42 GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAI 121 (351)
T ss_pred CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHHcCCCCCEEEeecccccccccccccC
Confidence 36688999999999999999999999976521 100 00 011 0 000 0 0 0
Q ss_pred hHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEE
Q 012383 193 PAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 272 (465)
Q Consensus 193 ~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI 272 (465)
+...||.+-+........+...|+||||+|.+-.. -...|+..++ +...++.+|
T Consensus 122 ~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~-------------aanaLLk~LE-------------Epp~~~~fi 175 (351)
T PRK09112 122 TVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRN-------------AANAILKTLE-------------EPPARALFI 175 (351)
T ss_pred CHHHHHHHHHHhhhccccCCceEEEEEchhhcCHH-------------HHHHHHHHHh-------------cCCCCceEE
Confidence 12344444333211112556789999999876211 1223555555 344566777
Q ss_pred EEeCCCCCCChhhhcCCCceEEEe-CCCHHHHHHHHHHhccCCCCChhHH
Q 012383 273 VTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVADDDI 321 (465)
Q Consensus 273 ~TTN~~~~LD~ALlR~GRfd~~i~-~P~~e~R~~Il~~~l~~~~v~~~~l 321 (465)
..|+.++.+.|.++. |+..+-. .|+.++-.+++.......+++.+.+
T Consensus 176 Lit~~~~~llptIrS--Rc~~i~l~pl~~~~~~~~L~~~~~~~~~~~~~~ 223 (351)
T PRK09112 176 LISHSSGRLLPTIRS--RCQPISLKPLDDDELKKALSHLGSSQGSDGEIT 223 (351)
T ss_pred EEECChhhccHHHHh--hccEEEecCCCHHHHHHHHHHhhcccCCCHHHH
Confidence 788889999888865 6644333 8899999999887543333444433
No 170
>PRK06526 transposase; Provisional
Probab=98.78 E-value=1.3e-08 Score=100.90 Aligned_cols=101 Identities=16% Similarity=0.133 Sum_probs=61.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEecccccccCCCCC-hHHHHHHHHHHHHHHHHhCCceEEEeccccc
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGE-PAKLIRQRYREAADIIKKGKMCCLMINDLDA 223 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~s~L~s~~~Ge-~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDa 223 (465)
.+.+++|+||||||||+||.+|+.++ |..++.++..++....... ....+...+. .-..+.+|+|||++.
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~------~l~~~dlLIIDD~g~ 170 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELV------KLGRYPLLIVDEVGY 170 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHH------HhccCCEEEEccccc
Confidence 45789999999999999999999884 6677667666655332100 0000111111 234578999999976
Q ss_pred ccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC
Q 012383 224 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF 278 (465)
Q Consensus 224 i~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~ 278 (465)
+.... .....|+++++ .. ..+..+|+|||.+
T Consensus 171 ~~~~~-----------~~~~~L~~li~--------~r-----~~~~s~IitSn~~ 201 (254)
T PRK06526 171 IPFEP-----------EAANLFFQLVS--------SR-----YERASLIVTSNKP 201 (254)
T ss_pred CCCCH-----------HHHHHHHHHHH--------HH-----HhcCCEEEEcCCC
Confidence 54321 22234555555 11 1223699999986
No 171
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.76 E-value=9.4e-08 Score=105.68 Aligned_cols=145 Identities=15% Similarity=0.105 Sum_probs=80.8
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEe-cccc-------------cccCC--CCChHHHHHHHHHHHHHHH
Q 012383 145 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM-SAGE-------------LESGN--AGEPAKLIRQRYREAADII 208 (465)
Q Consensus 145 ~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~v-s~s~-------------L~s~~--~Ge~~k~Ir~~F~~A~~~i 208 (465)
+..+.+.++|+||||||||++++++|++++..++.. +... +.+.+ .-.....++..+..|....
T Consensus 106 ~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~ 185 (637)
T TIGR00602 106 ENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKL 185 (637)
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhcccccccccchhhhhccccccchHHHHHHHHHHHHhhh
Confidence 334456799999999999999999999998765441 1110 00000 0112233444444442111
Q ss_pred ------HhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCC--
Q 012383 209 ------KKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFST-- 280 (465)
Q Consensus 209 ------~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~-- 280 (465)
......||||||||.+..+. ++.+..+|.-+. ....++|+|+++|.-..
T Consensus 186 ~~~g~~~~~~~~IILIDEiPn~~~r~---------~~~lq~lLr~~~--------------~e~~~~pLI~I~TE~~~~~ 242 (637)
T TIGR00602 186 QMLGDDLMTDKKIILVEDLPNQFYRD---------TRALHEILRWKY--------------VSIGRCPLVFIITESLEGD 242 (637)
T ss_pred cccccccCCceeEEEeecchhhchhh---------HHHHHHHHHHHh--------------hcCCCceEEEEecCCcccc
Confidence 02457799999999876431 122333331011 12356778877773211
Q ss_pred -------------CChhhhcCCCceEEEe-CCCHHHHHHHHHHhcc
Q 012383 281 -------------LYAPLIRDGRMEKFYW-APTREDRIGVCKGIFR 312 (465)
Q Consensus 281 -------------LD~ALlR~GRfd~~i~-~P~~e~R~~Il~~~l~ 312 (465)
|.++++..-|+..+-. +.+.....+.|+.++.
T Consensus 243 ~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~ 288 (637)
T TIGR00602 243 NNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVT 288 (637)
T ss_pred ccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHH
Confidence 3367875456655444 6677775555555554
No 172
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.75 E-value=2.7e-07 Score=95.33 Aligned_cols=156 Identities=15% Similarity=0.186 Sum_probs=98.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHhCCce-------------------------EEecccccccC-------------
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINP-------------------------IMMSAGELESG------------- 188 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~elg~~~-------------------------i~vs~s~L~s~------------- 188 (465)
+.|.++||+||+|+||+.+|+++|+.+.+.. ..+........
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 8899999999999999999999999976532 11111000000
Q ss_pred -CCC---------ChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCC
Q 012383 189 -NAG---------EPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLP 258 (465)
Q Consensus 189 -~~G---------e~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~ 258 (465)
-.| -....||++.+.+...-..+...|+|||+.|.+-. .-...|+..++
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~-------------~AaNaLLKtLE-------- 157 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNV-------------AAANALLKTLE-------- 157 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCH-------------HHHHHHHHHhc--------
Confidence 001 11234555554431111145567999999987522 12234555666
Q ss_pred CccccCCCCCceEEEEeCCCCCCChhhhcCCCceEEEe-CCCHHHHHHHHHHhccCCCCC-hhHHHHHhcCCCchhhH
Q 012383 259 GMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVA-DDDIVKLVDTFPGQSID 334 (465)
Q Consensus 259 g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~-~P~~e~R~~Il~~~l~~~~v~-~~~la~lt~gfsgadld 334 (465)
++.+++.+|.+|++++.|.|.+++ |+-.+.. .|+.++..+.+... +++ .+.+..++.|=++..++
T Consensus 158 -----EPp~~t~fiL~t~~~~~LLpTI~S--Rcq~i~~~~~~~~~~~~~L~~~----~~~~~~~~l~~~~Gsp~~Al~ 224 (342)
T PRK06964 158 -----EPPPGTVFLLVSARIDRLLPTILS--RCRQFPMTVPAPEAAAAWLAAQ----GVADADALLAEAGGAPLAALA 224 (342)
T ss_pred -----CCCcCcEEEEEECChhhCcHHHHh--cCEEEEecCCCHHHHHHHHHHc----CCChHHHHHHHcCCCHHHHHH
Confidence 667889999999999999999987 7755555 88899888888654 222 23445555554444443
No 173
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.73 E-value=2.7e-07 Score=90.27 Aligned_cols=149 Identities=13% Similarity=0.195 Sum_probs=97.7
Q ss_pred HHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEecccccccCCCCChHHHHHHHHHHHHHHHH-hC
Q 012383 136 ITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KG 211 (465)
Q Consensus 136 i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~-~~ 211 (465)
+++|........|-..|||||..|||||+|+||+-++. |...+.|+..+|. -+-.+++. ++ ..
T Consensus 72 L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~---------~Lp~l~~~----Lr~~~ 138 (287)
T COG2607 72 LVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLA---------TLPDLVEL----LRARP 138 (287)
T ss_pred HHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHh---------hHHHHHHH----HhcCC
Confidence 34444433334456799999999999999999999885 5678888877665 12233333 25 56
Q ss_pred CceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhh-c---
Q 012383 212 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLI-R--- 287 (465)
Q Consensus 212 ~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALl-R--- 287 (465)
..-|||+||+- +. .....-..+...| + |. ......+|+|-+|+||...|+.-+. +
T Consensus 139 ~kFIlFcDDLS-----Fe---~gd~~yK~LKs~L----e--------G~-ve~rP~NVl~YATSNRRHLl~e~~~dn~~~ 197 (287)
T COG2607 139 EKFILFCDDLS-----FE---EGDDAYKALKSAL----E--------GG-VEGRPANVLFYATSNRRHLLPEDMKDNEGS 197 (287)
T ss_pred ceEEEEecCCC-----CC---CCchHHHHHHHHh----c--------CC-cccCCCeEEEEEecCCcccccHhhhhCCCc
Confidence 67899999982 11 1111123333222 3 32 1234578999999999988875542 1
Q ss_pred ----------------CCCceEEEe--CCCHHHHHHHHHHhccCCCCCh
Q 012383 288 ----------------DGRMEKFYW--APTREDRIGVCKGIFRNDNVAD 318 (465)
Q Consensus 288 ----------------~GRfd~~i~--~P~~e~R~~Il~~~l~~~~v~~ 318 (465)
..||...+- .++.++=..|+..+.+..+++.
T Consensus 198 ~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~ 246 (287)
T COG2607 198 TGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDI 246 (287)
T ss_pred ccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCC
Confidence 236666555 7888888999988887776664
No 174
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=98.71 E-value=6.3e-08 Score=99.66 Aligned_cols=83 Identities=19% Similarity=0.242 Sum_probs=53.5
Q ss_pred ceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCc-cccCCCccccCCCCCceEEEEeCCCC-CCChhhhcCCC
Q 012383 213 MCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT-CVQLPGMYNKEENPRVPIIVTGNDFS-TLYAPLIRDGR 290 (465)
Q Consensus 213 p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~-~v~l~g~~~~~~~~~V~VI~TTN~~~-~LD~ALlR~GR 290 (465)
..+||||||+.+. ..+++.|++.++... .+..+|.. .....++.+|+|+|..+ .++++|+. |
T Consensus 129 ~GiL~lDEInrl~-------------~~~q~~Lle~mee~~v~v~r~G~~-~~~p~rfiviAt~NP~e~~l~~aLld--R 192 (334)
T PRK13407 129 RGYLYIDEVNLLE-------------DHIVDLLLDVAQSGENVVEREGLS-IRHPARFVLVGSGNPEEGELRPQLLD--R 192 (334)
T ss_pred CCeEEecChHhCC-------------HHHHHHHHHHHHcCCeEEEECCeE-EecCCCEEEEecCCcccCCCCHHHHh--h
Confidence 3599999998643 233445666665222 12333331 12335788899998644 68999986 8
Q ss_pred ceEEEe--CC-CHHHHHHHHHHhc
Q 012383 291 MEKFYW--AP-TREDRIGVCKGIF 311 (465)
Q Consensus 291 fd~~i~--~P-~~e~R~~Il~~~l 311 (465)
|...+. .| +.++|.+|++...
T Consensus 193 F~~~v~v~~~~~~~e~~~il~~~~ 216 (334)
T PRK13407 193 FGLSVEVRSPRDVETRVEVIRRRD 216 (334)
T ss_pred cceEEEcCCCCcHHHHHHHHHHhh
Confidence 887777 44 4489999988754
No 175
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.71 E-value=8.1e-08 Score=95.28 Aligned_cols=68 Identities=22% Similarity=0.353 Sum_probs=50.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEecccccccCCCCChHHHHHHHHHH---HHHHHH-hCCceEEEecc
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYRE---AADIIK-KGKMCCLMIND 220 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~---A~~~i~-~~~p~ILfIDE 220 (465)
.+.+++|+||||+|||+||-||++++ |..++.++.+++++. +...|.. ..++.+ -....+|||||
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~--------Lk~~~~~~~~~~~l~~~l~~~dlLIiDD 175 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSK--------LKAAFDEGRLEEKLLRELKKVDLLIIDD 175 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH--------HHHHHhcCchHHHHHHHhhcCCEEEEec
Confidence 57899999999999999999999995 788899999888733 3333332 112223 44567999999
Q ss_pred ccc
Q 012383 221 LDA 223 (465)
Q Consensus 221 IDa 223 (465)
|-.
T Consensus 176 lG~ 178 (254)
T COG1484 176 IGY 178 (254)
T ss_pred ccC
Confidence 943
No 176
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=1e-07 Score=106.50 Aligned_cols=135 Identities=21% Similarity=0.237 Sum_probs=99.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh----------CCceEEecccccc--cCCCCChHHHHHHHHHHHHHHHHhCCceEEEe
Q 012383 151 ILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKKGKMCCLMI 218 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~el----------g~~~i~vs~s~L~--s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfI 218 (465)
.-+|.|+||+|||.++.-+|... +..++.++.+.|. .+|-|+-+..++.+.++. ++..+.||||
T Consensus 193 NPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev----~~~~~vILFI 268 (786)
T COG0542 193 NPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEV----EKSKNVILFI 268 (786)
T ss_pred CCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCcHHHHHHHHHHHH----hcCCCeEEEE
Confidence 44788999999999999999983 5567778877775 458899999999998887 7666999999
Q ss_pred cccccccCCCCCCc-ccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC-----CCCChhhhcCCCce
Q 012383 219 NDLDAGAGRMGGTT-QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF-----STLYAPLIRDGRME 292 (465)
Q Consensus 219 DEIDai~~~r~~~~-~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~-----~~LD~ALlR~GRfd 292 (465)
|||..+.+.-.... .....| ++.-.| .+..+-+|++|..- =.-|+||-| ||.
T Consensus 269 DEiHtiVGAG~~~G~a~DAaN-iLKPaL-------------------ARGeL~~IGATT~~EYRk~iEKD~AL~R--RFQ 326 (786)
T COG0542 269 DEIHTIVGAGATEGGAMDAAN-LLKPAL-------------------ARGELRCIGATTLDEYRKYIEKDAALER--RFQ 326 (786)
T ss_pred echhhhcCCCcccccccchhh-hhHHHH-------------------hcCCeEEEEeccHHHHHHHhhhchHHHh--cCc
Confidence 99999987643111 111111 222122 23456677777532 246999999 999
Q ss_pred EEEe-CCCHHHHHHHHHHhc
Q 012383 293 KFYW-APTREDRIGVCKGIF 311 (465)
Q Consensus 293 ~~i~-~P~~e~R~~Il~~~l 311 (465)
.++- .|+.++-..|++.+-
T Consensus 327 ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 327 KVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred eeeCCCCCHHHHHHHHHHHH
Confidence 9888 999999999987764
No 177
>PRK09183 transposase/IS protein; Provisional
Probab=98.69 E-value=2.1e-08 Score=99.56 Aligned_cols=104 Identities=14% Similarity=0.085 Sum_probs=63.2
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHH---hCCceEEecccccccCCCCC-hHHHHHHHHHHHHHHHHhCCceEEEeccc
Q 012383 146 IKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELESGNAGE-PAKLIRQRYREAADIIKKGKMCCLMINDL 221 (465)
Q Consensus 146 ~~~p~glLL~GPPGtGKT~LAraIA~e---lg~~~i~vs~s~L~s~~~Ge-~~k~Ir~~F~~A~~~i~~~~p~ILfIDEI 221 (465)
+.....++|+||||||||+|+.+++.+ .|..+..++..++...+... ....+...|... ...+.+|+|||+
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-----~~~~dlLiiDdl 173 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-----VMAPRLLIIDEI 173 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-----hcCCCEEEEccc
Confidence 344568999999999999999999876 46677777766665322100 000122223221 346789999999
Q ss_pred ccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC
Q 012383 222 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF 278 (465)
Q Consensus 222 Dai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~ 278 (465)
+...... .....|+++++ ..+ .+-.+|+|||.+
T Consensus 174 g~~~~~~-----------~~~~~lf~li~--------~r~-----~~~s~iiTsn~~ 206 (259)
T PRK09183 174 GYLPFSQ-----------EEANLFFQVIA--------KRY-----EKGSMILTSNLP 206 (259)
T ss_pred ccCCCCh-----------HHHHHHHHHHH--------HHH-----hcCcEEEecCCC
Confidence 7643322 12235666665 221 122589999975
No 178
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.67 E-value=1.3e-06 Score=89.29 Aligned_cols=160 Identities=14% Similarity=0.142 Sum_probs=99.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHhCCce----------EEecccccc--cC---CCCC-------------------
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINP----------IMMSAGELE--SG---NAGE------------------- 192 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~elg~~~----------i~vs~s~L~--s~---~~Ge------------------- 192 (465)
+.|..+||+||+|+||+.+|.++|+.+-..- ...+.+++. .. ..|+
T Consensus 24 rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~ 103 (314)
T PRK07399 24 RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQ 103 (314)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccccccchhhhhhcccccccccc
Confidence 5678999999999999999999999963321 011111111 00 0011
Q ss_pred -hHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceE
Q 012383 193 -PAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI 271 (465)
Q Consensus 193 -~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~V 271 (465)
....+|++-+.+...--.+...|++||++|.+- ..-...|+..++ ++. +..+
T Consensus 104 I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~-------------~~aaNaLLK~LE-------------EPp-~~~f 156 (314)
T PRK07399 104 IRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMN-------------EAAANALLKTLE-------------EPG-NGTL 156 (314)
T ss_pred CcHHHHHHHHHHHccCcccCCceEEEEEchhhcC-------------HHHHHHHHHHHh-------------CCC-CCeE
Confidence 112455554444111114567899999998652 122335556666 333 4567
Q ss_pred EEEeCCCCCCChhhhcCCCceEEEe-CCCHHHHHHHHHHhccCCCCCh--hHHHHHhcCCCchhhHH
Q 012383 272 IVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVAD--DDIVKLVDTFPGQSIDF 335 (465)
Q Consensus 272 I~TTN~~~~LD~ALlR~GRfd~~i~-~P~~e~R~~Il~~~l~~~~v~~--~~la~lt~gfsgadld~ 335 (465)
|.+|++++.|.|.++. |+..+-. .|+.++..+++.........+. +.+..++.|=++..+..
T Consensus 157 ILi~~~~~~Ll~TI~S--Rcq~i~f~~l~~~~~~~~L~~~~~~~~~~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 157 ILIAPSPESLLPTIVS--RCQIIPFYRLSDEQLEQVLKRLGDEEILNINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred EEEECChHhCcHHHHh--hceEEecCCCCHHHHHHHHHHhhccccchhHHHHHHHHcCCCHHHHHHH
Confidence 8888999999999986 7766555 8899999999887755444443 56666666655555543
No 179
>PRK04132 replication factor C small subunit; Provisional
Probab=98.67 E-value=2.6e-07 Score=104.85 Aligned_cols=143 Identities=15% Similarity=0.148 Sum_probs=100.5
Q ss_pred EEEc--CCCCcHHHHHHHHHHHh-----CCceEEecccccccCCCCChHHHHHHHHHHHHHHHHh--CCceEEEeccccc
Q 012383 153 GIWG--GKGQGKSFQCELVFAKM-----GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK--GKMCCLMINDLDA 223 (465)
Q Consensus 153 LL~G--PPGtGKT~LAraIA~el-----g~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~--~~p~ILfIDEIDa 223 (465)
+..| |++.|||++|+++|+++ +.+++.+++++-. +...||++.+.++..... .+..|+||||+|.
T Consensus 568 ~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~r------gid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~ 641 (846)
T PRK04132 568 FIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDER------GINVIREKVKEFARTKPIGGASFKIIFLDEADA 641 (846)
T ss_pred hhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcc------cHHHHHHHHHHHHhcCCcCCCCCEEEEEECccc
Confidence 4558 99999999999999998 5689999998642 234677776655222111 1347999999998
Q ss_pred ccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhhcCCCceEEEe-CCCHHH
Q 012383 224 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTRED 302 (465)
Q Consensus 224 i~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~-~P~~e~ 302 (465)
+.. ..++.|+.+++ +....+.+|++||+++.|.++++. |+..+-. .|+.++
T Consensus 642 Lt~-------------~AQnALLk~lE-------------ep~~~~~FILi~N~~~kIi~tIrS--RC~~i~F~~ls~~~ 693 (846)
T PRK04132 642 LTQ-------------DAQQALRRTME-------------MFSSNVRFILSCNYSSKIIEPIQS--RCAIFRFRPLRDED 693 (846)
T ss_pred CCH-------------HHHHHHHHHhh-------------CCCCCeEEEEEeCChhhCchHHhh--hceEEeCCCCCHHH
Confidence 632 12445666666 445678999999999999999986 7766555 788888
Q ss_pred HHHHHHHhccCCCC--ChhHHHHHhcCCC
Q 012383 303 RIGVCKGIFRNDNV--ADDDIVKLVDTFP 329 (465)
Q Consensus 303 R~~Il~~~l~~~~v--~~~~la~lt~gfs 329 (465)
-..+++.+....++ +.+.+..++....
T Consensus 694 i~~~L~~I~~~Egi~i~~e~L~~Ia~~s~ 722 (846)
T PRK04132 694 IAKRLRYIAENEGLELTEEGLQAILYIAE 722 (846)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHcC
Confidence 88888877766554 4555554444333
No 180
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.62 E-value=6.4e-08 Score=106.59 Aligned_cols=144 Identities=13% Similarity=0.117 Sum_probs=90.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhCC--ceEEecccccccCCCCChHHHHHHHHHHHH-----HHHHhCCceEEEecccc
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAGELESGNAGEPAKLIRQRYREAA-----DIIKKGKMCCLMINDLD 222 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~elg~--~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~-----~~i~~~~p~ILfIDEID 222 (465)
.+|||.|+||||||++|+++++.+.. +|+.+..+...+...|.- .+...+.... ..+......+||||||+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~i--dl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~ 94 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGI--DVEESLAGGQRVTQPGLLDEAPRGVLYVDMAN 94 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccch--hhhhhhhcCcccCCCCCeeeCCCCcEeccchh
Confidence 48999999999999999999998764 577776543444444431 0111111000 01112234599999997
Q ss_pred cccCCCCCCcccchhhHHHHHHHHHhhcCCcc-ccCCCccccCCCCCceEEEEeCCCC---CCChhhhcCCCceEEEe--
Q 012383 223 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTC-VQLPGMYNKEENPRVPIIVTGNDFS---TLYAPLIRDGRMEKFYW-- 296 (465)
Q Consensus 223 ai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~-v~l~g~~~~~~~~~V~VI~TTN~~~---~LD~ALlR~GRfd~~i~-- 296 (465)
.+.. .++..|++.++..+. +.-.|.. .....++.||+|+|..+ .|+++|+. ||+..+.
T Consensus 95 rl~~-------------~~q~~Ll~al~~g~v~i~r~G~~-~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~ 158 (589)
T TIGR02031 95 LLDD-------------GLSNRLLQALDEGVVIVEREGIS-VVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLE 158 (589)
T ss_pred hCCH-------------HHHHHHHHHHHcCCeEEEECCCc-eeecCceEEEEecCCccccCCCCHHHHH--hccCeeecC
Confidence 6532 334556666652211 1111221 11234678999999775 79999987 8888766
Q ss_pred -CCCHHHHHHHHHHhc
Q 012383 297 -APTREDRIGVCKGIF 311 (465)
Q Consensus 297 -~P~~e~R~~Il~~~l 311 (465)
+|..++|.+|++.++
T Consensus 159 ~~~~~~er~eil~~~~ 174 (589)
T TIGR02031 159 DVASQDLRVEIVRRER 174 (589)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 788999999987765
No 181
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.61 E-value=1.7e-07 Score=104.11 Aligned_cols=144 Identities=19% Similarity=0.195 Sum_probs=86.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh-----------------------------------CCceEEecccccccCCCCChH
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKM-----------------------------------GINPIMMSAGELESGNAGEPA 194 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~el-----------------------------------g~~~i~vs~s~L~s~~~Ge~~ 194 (465)
.+|||+||||||||++|+++++.+ ..+|+.+..+...+..+|.-.
T Consensus 26 g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d 105 (633)
T TIGR02442 26 GGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLD 105 (633)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhcccccccCCCCeeeCCCCCcHHHcCCccc
Confidence 479999999999999999999887 235555554444444444210
Q ss_pred HHHHHHHHHH-----HHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCc-cccCCCccccCCCCC
Q 012383 195 KLIRQRYREA-----ADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT-CVQLPGMYNKEENPR 268 (465)
Q Consensus 195 k~Ir~~F~~A-----~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~-~v~l~g~~~~~~~~~ 268 (465)
+...+... ...+......|||||||+.+.. .++..|++.++... .+.-.|.. .....+
T Consensus 106 --~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~-------------~~q~~Ll~~le~g~~~v~r~g~~-~~~~~~ 169 (633)
T TIGR02442 106 --IERALREGEKAFQPGLLAEAHRGILYIDEVNLLDD-------------HLVDVLLDAAAMGVNRVEREGLS-VSHPAR 169 (633)
T ss_pred --HHHHhhcCCeeecCcceeecCCCeEEeChhhhCCH-------------HHHHHHHHHHhcCCEEEEECCce-eeecCC
Confidence 11111100 0111122346999999986532 23445666665322 22222321 122367
Q ss_pred ceEEEEeCCC-CCCChhhhcCCCceEEEe---CCCHHHHHHHHHHhc
Q 012383 269 VPIIVTGNDF-STLYAPLIRDGRMEKFYW---APTREDRIGVCKGIF 311 (465)
Q Consensus 269 V~VI~TTN~~-~~LD~ALlR~GRfd~~i~---~P~~e~R~~Il~~~l 311 (465)
+.+|+|+|.. ..|.++|+. ||+..+. ..+.+++.+|++..+
T Consensus 170 ~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~~~ 214 (633)
T TIGR02442 170 FVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRRRL 214 (633)
T ss_pred eEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHHHH
Confidence 8999999954 468889986 8887777 445678888876543
No 182
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.61 E-value=9.4e-07 Score=90.52 Aligned_cols=158 Identities=15% Similarity=0.175 Sum_probs=99.4
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEE-------------ecccccc-----cCCCCC------hHHHHHHHH
Q 012383 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM-------------MSAGELE-----SGNAGE------PAKLIRQRY 201 (465)
Q Consensus 146 ~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~-------------vs~s~L~-----s~~~Ge------~~k~Ir~~F 201 (465)
-+.|.++||+||+|+||+.+|.++|+.+-+.-.. -+.+++. -...|. ....||++-
T Consensus 23 ~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~ 102 (319)
T PRK08769 23 GRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREIS 102 (319)
T ss_pred CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHH
Confidence 3678899999999999999999999986442100 0001110 001111 133455555
Q ss_pred HHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCC
Q 012383 202 REAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTL 281 (465)
Q Consensus 202 ~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~L 281 (465)
+.+...-..+.-.|++||+.|.+-. .-.+.|++.++ ++..++.+|.+|+.++.|
T Consensus 103 ~~~~~~p~~g~~kV~iI~~ae~m~~-------------~AaNaLLKtLE-------------EPp~~~~fiL~~~~~~~l 156 (319)
T PRK08769 103 QKLALTPQYGIAQVVIVDPADAINR-------------AACNALLKTLE-------------EPSPGRYLWLISAQPARL 156 (319)
T ss_pred HHHhhCcccCCcEEEEeccHhhhCH-------------HHHHHHHHHhh-------------CCCCCCeEEEEECChhhC
Confidence 4441111134557999999987621 12234555666 566788999999999999
Q ss_pred ChhhhcCCCceEEEe-CCCHHHHHHHHHHhccCCCCChh---HHHHHhcCCCchhhHH
Q 012383 282 YAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVADD---DIVKLVDTFPGQSIDF 335 (465)
Q Consensus 282 D~ALlR~GRfd~~i~-~P~~e~R~~Il~~~l~~~~v~~~---~la~lt~gfsgadld~ 335 (465)
.|.++. |+..+-. .|+.++-.+.+.. .+++.. .+..++.|-++..+++
T Consensus 157 LpTIrS--RCq~i~~~~~~~~~~~~~L~~----~~~~~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 157 PATIRS--RCQRLEFKLPPAHEALAWLLA----QGVSERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred chHHHh--hheEeeCCCcCHHHHHHHHHH----cCCChHHHHHHHHHcCCCHHHHHHH
Confidence 999886 7777666 7888877777654 245544 4556666666555544
No 183
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.60 E-value=8.3e-08 Score=103.97 Aligned_cols=137 Identities=16% Similarity=0.183 Sum_probs=83.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEEe----cccccc-----cCCCCChHHHHHHHHHHHHHHHHhCCceEEEeccc
Q 012383 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMM----SAGELE-----SGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDL 221 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~elg~~~i~v----s~s~L~-----s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEI 221 (465)
.|||+|+||||||.+|+++++......+.. ++..+. +...|+. .++. ..+......+|+|||+
T Consensus 238 ~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~------~~~~--G~l~~A~~Gil~iDEi 309 (509)
T smart00350 238 NILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREF------TLEG--GALVLADNGVCCIDEF 309 (509)
T ss_pred eEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEccCcceE------EecC--ccEEecCCCEEEEech
Confidence 699999999999999999999865432221 111121 1111110 0000 0011234569999999
Q ss_pred ccccCCCCCCcccchhhHHHHHHHHHhhcCCc-cccCCCccccCCCCCceEEEEeCCCC-------------CCChhhhc
Q 012383 222 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPT-CVQLPGMYNKEENPRVPIIVTGNDFS-------------TLYAPLIR 287 (465)
Q Consensus 222 Dai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~-~v~l~g~~~~~~~~~V~VI~TTN~~~-------------~LD~ALlR 287 (465)
|.+... .+..|++.++..+ .+.-.|.. ..-..+..||+|+|... .|+++++.
T Consensus 310 ~~l~~~-------------~q~~L~e~me~~~i~i~k~G~~-~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs 375 (509)
T smart00350 310 DKMDDS-------------DRTAIHEAMEQQTISIAKAGIT-TTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILS 375 (509)
T ss_pred hhCCHH-------------HHHHHHHHHhcCEEEEEeCCEE-EEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhC
Confidence 976432 2334555554211 01112220 11236788999999653 69999997
Q ss_pred CCCceEEEe---CCCHHHHHHHHHHhc
Q 012383 288 DGRMEKFYW---APTREDRIGVCKGIF 311 (465)
Q Consensus 288 ~GRfd~~i~---~P~~e~R~~Il~~~l 311 (465)
|||..+. .|+.+...+|++.++
T Consensus 376 --RFdLi~~~~d~~~~~~d~~i~~~i~ 400 (509)
T smart00350 376 --RFDLLFVVLDEVDEERDRELAKHVV 400 (509)
T ss_pred --ceeeEEEecCCCChHHHHHHHHHHH
Confidence 9999877 899999999987755
No 184
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=98.59 E-value=1.9e-07 Score=100.73 Aligned_cols=178 Identities=15% Similarity=0.237 Sum_probs=111.4
Q ss_pred ccccccCCCCCchhHHHHHHHHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCce--EEecc------ccc
Q 012383 114 NLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINP--IMMSA------GEL 185 (465)
Q Consensus 114 ~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~--i~vs~------s~L 185 (465)
+|++++|. +.+....+|-+... +.+.+.||.||-|||||++||.+|+.+++.- ..--+ -++
T Consensus 14 ~F~evvGQ---------e~v~~~L~nal~~~--ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I 82 (515)
T COG2812 14 TFDDVVGQ---------EHVVKTLSNALENG--RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEI 82 (515)
T ss_pred cHHHhccc---------HHHHHHHHHHHHhC--cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhh
Confidence 56788887 33444444544433 4467899999999999999999999987742 11000 011
Q ss_pred ccC----------CCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccc
Q 012383 186 ESG----------NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCV 255 (465)
Q Consensus 186 ~s~----------~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v 255 (465)
..+ -.-.+...||++-+++.-.--.++..|.+|||++-+.. +..++ |+.-+.
T Consensus 83 ~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~------------~afNA-LLKTLE----- 144 (515)
T COG2812 83 NEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSK------------QAFNA-LLKTLE----- 144 (515)
T ss_pred hcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhH------------HHHHH-Hhcccc-----
Confidence 111 01123455666666651111156677999999965432 22232 323333
Q ss_pred cCCCccccCCCCCceEEEEeCCCCCCChhhhcCCCceEEEe-CCCHHHHHHHHHHhccCCCCCh--hHHHHHhcCCCc
Q 012383 256 QLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVAD--DDIVKLVDTFPG 330 (465)
Q Consensus 256 ~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~-~P~~e~R~~Il~~~l~~~~v~~--~~la~lt~gfsg 330 (465)
++...|.+|.+|-.+..+++-++. |+.++-. .-+.++...-+..++..+++.. +.+.-+.....|
T Consensus 145 --------EPP~hV~FIlATTe~~Kip~TIlS--Rcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G 212 (515)
T COG2812 145 --------EPPSHVKFILATTEPQKIPNTILS--RCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG 212 (515)
T ss_pred --------cCccCeEEEEecCCcCcCchhhhh--ccccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC
Confidence 566889999999999999999886 6666666 6666777788888888776653 344444444444
No 185
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.58 E-value=5.3e-08 Score=87.07 Aligned_cols=115 Identities=16% Similarity=0.170 Sum_probs=54.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEEeccc-ccc-cCCCCChHHHHHHHHHHHHHHHH----hCCceEEEecccccc
Q 012383 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG-ELE-SGNAGEPAKLIRQRYREAADIIK----KGKMCCLMINDLDAG 224 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s-~L~-s~~~Ge~~k~Ir~~F~~A~~~i~----~~~p~ILfIDEIDai 224 (465)
.|||+|+||+|||++|+++|+.+|..|..+... ++. +...|.+ +|+....... ---..|+|+|||...
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~------v~~~~~~~f~~~~GPif~~ill~DEiNra 74 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFP------VYDQETGEFEFRPGPIFTNILLADEINRA 74 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEE------EEETTTTEEEEEE-TT-SSEEEEETGGGS
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeee------eeccCCCeeEeecChhhhceeeecccccC
Confidence 489999999999999999999999999887653 232 0000100 0000000000 001249999999542
Q ss_pred cCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCC-CCceEEEEeCCCC-----CCChhhhc
Q 012383 225 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEEN-PRVPIIVTGNDFS-----TLYAPLIR 287 (465)
Q Consensus 225 ~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~-~~V~VI~TTN~~~-----~LD~ALlR 287 (465)
. ..+++.|++.+. ...|.++|. .... ....||+|-|..+ .|++|++-
T Consensus 75 p-------------pktQsAlLeam~-Er~Vt~~g~--~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D 127 (131)
T PF07726_consen 75 P-------------PKTQSALLEAME-ERQVTIDGQ--TYPLPDPFFVIATQNPVEQEGTYPLPEAQLD 127 (131)
T ss_dssp --------------HHHHHHHHHHHH-HSEEEETTE--EEE--SS-EEEEEE-TT--S------HHHHT
T ss_pred C-------------HHHHHHHHHHHH-cCeEEeCCE--EEECCCcEEEEEecCccccCceecCCHHHhc
Confidence 2 223455555555 223333333 1122 4578899999876 78888774
No 186
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.58 E-value=1.1e-06 Score=90.17 Aligned_cols=129 Identities=13% Similarity=0.117 Sum_probs=84.1
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHhCCc------------------------eEEecccccccCCCCC--hHHHHHH
Q 012383 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGE--PAKLIRQ 199 (465)
Q Consensus 146 ~~~p~glLL~GPPGtGKT~LAraIA~elg~~------------------------~i~vs~s~L~s~~~Ge--~~k~Ir~ 199 (465)
-+.|..+|||||+|+|||++|+++|+.+-.. +..+.. .|. ....||+
T Consensus 25 ~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~-------~~~~i~id~ir~ 97 (329)
T PRK08058 25 NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAP-------DGQSIKKDQIRY 97 (329)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEecc-------ccccCCHHHHHH
Confidence 3568899999999999999999999996432 111111 121 1234555
Q ss_pred HHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC
Q 012383 200 RYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS 279 (465)
Q Consensus 200 ~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~ 279 (465)
+-+.+...-..+...|+||||+|.+-. .....|+..++ ++...+.+|.+|+.+.
T Consensus 98 l~~~~~~~~~~~~~kvviI~~a~~~~~-------------~a~NaLLK~LE-------------EPp~~~~~Il~t~~~~ 151 (329)
T PRK08058 98 LKEEFSKSGVESNKKVYIIEHADKMTA-------------SAANSLLKFLE-------------EPSGGTTAILLTENKH 151 (329)
T ss_pred HHHHHhhCCcccCceEEEeehHhhhCH-------------HHHHHHHHHhc-------------CCCCCceEEEEeCChH
Confidence 544331000134567999999976521 12335666666 4456778888999999
Q ss_pred CCChhhhcCCCceEEEe-CCCHHHHHHHHHH
Q 012383 280 TLYAPLIRDGRMEKFYW-APTREDRIGVCKG 309 (465)
Q Consensus 280 ~LD~ALlR~GRfd~~i~-~P~~e~R~~Il~~ 309 (465)
.|.|.++. |+..+.. .|+.++-.++++.
T Consensus 152 ~ll~TIrS--Rc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 152 QILPTILS--RCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred hCcHHHHh--hceeeeCCCCCHHHHHHHHHH
Confidence 99999886 6666555 7888887776653
No 187
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.56 E-value=5.8e-06 Score=81.12 Aligned_cols=76 Identities=17% Similarity=0.247 Sum_probs=44.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHhCC-ceEE--e-c----ccc----cccC----CCCCh-HHHHHHHHHHHHHHHHhC
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKMGI-NPIM--M-S----AGE----LESG----NAGEP-AKLIRQRYREAADIIKKG 211 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~elg~-~~i~--v-s----~s~----L~s~----~~Ge~-~k~Ir~~F~~A~~~i~~~ 211 (465)
+..++|+||+|+|||++++.+++++.. .++. + . ..+ +... ..+.. ...++.+..........+
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~ 122 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAG 122 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 346889999999999999999999763 2221 1 1 111 1111 11211 122333333333333577
Q ss_pred CceEEEecccccc
Q 012383 212 KMCCLMINDLDAG 224 (465)
Q Consensus 212 ~p~ILfIDEIDai 224 (465)
.+.+|+|||++.+
T Consensus 123 ~~~vliiDe~~~l 135 (269)
T TIGR03015 123 KRALLVVDEAQNL 135 (269)
T ss_pred CCeEEEEECcccC
Confidence 8899999999865
No 188
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.56 E-value=8e-07 Score=91.22 Aligned_cols=137 Identities=9% Similarity=0.079 Sum_probs=91.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEE--e--------------ccccc--ccCCCCC--hHHHHHHHHHHHHH
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIM--M--------------SAGEL--ESGNAGE--PAKLIRQRYREAAD 206 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~--v--------------s~s~L--~s~~~Ge--~~k~Ir~~F~~A~~ 206 (465)
+.|.++||+||+|+||+.+|+++|+.+-+.--. - +.+++ +....|. ....||++-+.+..
T Consensus 22 rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~ 101 (325)
T PRK06871 22 LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQ 101 (325)
T ss_pred CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhh
Confidence 568899999999999999999999996442100 0 01111 1111121 24456666555422
Q ss_pred HHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhh
Q 012383 207 IIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLI 286 (465)
Q Consensus 207 ~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALl 286 (465)
.-..+...|++||++|.+-. .-...|+..++ ++.+++.+|.+|+.++.|.|.++
T Consensus 102 ~~~~g~~KV~iI~~a~~m~~-------------~AaNaLLKtLE-------------EPp~~~~fiL~t~~~~~llpTI~ 155 (325)
T PRK06871 102 HAQQGGNKVVYIQGAERLTE-------------AAANALLKTLE-------------EPRPNTYFLLQADLSAALLPTIY 155 (325)
T ss_pred ccccCCceEEEEechhhhCH-------------HHHHHHHHHhc-------------CCCCCeEEEEEECChHhCchHHH
Confidence 21356667999999987532 22345556666 66778899999999999999987
Q ss_pred cCCCceEEEe-CCCHHHHHHHHHHhc
Q 012383 287 RDGRMEKFYW-APTREDRIGVCKGIF 311 (465)
Q Consensus 287 R~GRfd~~i~-~P~~e~R~~Il~~~l 311 (465)
. |+-.+.. .|+.++-.+.+....
T Consensus 156 S--RC~~~~~~~~~~~~~~~~L~~~~ 179 (325)
T PRK06871 156 S--RCQTWLIHPPEEQQALDWLQAQS 179 (325)
T ss_pred h--hceEEeCCCCCHHHHHHHHHHHh
Confidence 6 7766666 778888777776543
No 189
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.51 E-value=1.2e-06 Score=90.82 Aligned_cols=56 Identities=16% Similarity=0.098 Sum_probs=41.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHhCC-------ceEEecc----cccccCCCCChHHHHHHHHHH
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAKMGI-------NPIMMSA----GELESGNAGEPAKLIRQRYRE 203 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~elg~-------~~i~vs~----s~L~s~~~Ge~~k~Ir~~F~~ 203 (465)
..+.++|+||||||||++|+++++.++. +++.++. +.+.+.-++--....|..|.+
T Consensus 77 ~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~sp~~e~Pl~l~p~~~r~~~~~ 143 (361)
T smart00763 77 RKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEESPMHEDPLHLFPDELREDLED 143 (361)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCCCCCccCCcccCCHHHHHHHHH
Confidence 3589999999999999999999999987 7888887 555444444334444555533
No 190
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.49 E-value=3.5e-07 Score=85.34 Aligned_cols=120 Identities=18% Similarity=0.243 Sum_probs=70.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEecccccccCCCCChHHHHHHHHHHH-----------HHHHHhCCce
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREA-----------ADIIKKGKMC 214 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A-----------~~~i~~~~p~ 214 (465)
|.-|||+|++||||+++|++|-+.. +.+|+.++++.+-. +..-..+|... ...+....-.
T Consensus 22 ~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~------~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~~G 95 (168)
T PF00158_consen 22 DLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPE------ELLESELFGHEKGAFTGARSDKKGLLEQANGG 95 (168)
T ss_dssp TS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-H------HHHHHHHHEBCSSSSTTTSSEBEHHHHHTTTS
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhc------chhhhhhhccccccccccccccCCceeeccce
Confidence 4679999999999999999998875 35899999986631 12223444321 0233344667
Q ss_pred EEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhhcCCCce
Q 012383 215 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 292 (465)
Q Consensus 215 ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd 292 (465)
.|||||||.+.. .++.-|+++++..+...+.+. .....++-||+|||.. |.. ++..|+|.
T Consensus 96 tL~Ld~I~~L~~-------------~~Q~~Ll~~l~~~~~~~~g~~--~~~~~~~RiI~st~~~--l~~-~v~~g~fr 155 (168)
T PF00158_consen 96 TLFLDEIEDLPP-------------ELQAKLLRVLEEGKFTRLGSD--KPVPVDVRIIASTSKD--LEE-LVEQGRFR 155 (168)
T ss_dssp EEEEETGGGS-H-------------HHHHHHHHHHHHSEEECCTSS--SEEE--EEEEEEESS---HHH-HHHTTSS-
T ss_pred EEeecchhhhHH-------------HHHHHHHHHHhhchhcccccc--ccccccceEEeecCcC--HHH-HHHcCCCh
Confidence 999999987643 344556666663322222111 1223578899999863 333 44446654
No 191
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.49 E-value=3.1e-07 Score=79.01 Aligned_cols=105 Identities=17% Similarity=0.225 Sum_probs=54.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCC
Q 012383 152 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGT 231 (465)
Q Consensus 152 lLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~ 231 (465)
|.||||||+|||++|+.+|..+.-.+-......+.....+. +.|. . -.++ .|+++||+......
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~~------~~w~-g----Y~~q-~vvi~DD~~~~~~~---- 64 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPGD------KFWD-G----YQGQ-PVVIIDDFGQDNDG---- 64 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCcc------chhh-c----cCCC-cEEEEeecCccccc----
Confidence 57999999999999999998865333111111111111110 1111 1 1334 58999999653221
Q ss_pred cccchhhHHHHHHHHHhhcC-CccccCCCcccc-CCCCCceEEEEeCC
Q 012383 232 TQYTVNNQMVNATLMNIADN-PTCVQLPGMYNK-EENPRVPIIVTGND 277 (465)
Q Consensus 232 ~~~~v~~~~v~~~Ll~llD~-~~~v~l~g~~~~-~~~~~V~VI~TTN~ 277 (465)
. ... ....+++++++ |....+.+...+ .......||+|||.
T Consensus 65 ---~-~~~-~~~~l~~l~s~~~~~~~~a~~~~K~~~~~s~~vi~tsN~ 107 (107)
T PF00910_consen 65 ---Y-NYS-DESELIRLISSNPFQPNMADLEDKGTPFNSKLVIITSNF 107 (107)
T ss_pred ---c-chH-HHHHHHHHHhcCCcccccccHhhCCCccCCCEEEEcCCC
Confidence 0 111 33345566664 333333333211 12244689999984
No 192
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.48 E-value=1.1e-06 Score=90.57 Aligned_cols=159 Identities=13% Similarity=0.095 Sum_probs=99.3
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCc-eEE---------------eccccc--ccCCCC---ChHHHHHHHHHH
Q 012383 145 NIKVPLILGIWGGKGQGKSFQCELVFAKMGIN-PIM---------------MSAGEL--ESGNAG---EPAKLIRQRYRE 203 (465)
Q Consensus 145 ~~~~p~glLL~GPPGtGKT~LAraIA~elg~~-~i~---------------vs~s~L--~s~~~G---e~~k~Ir~~F~~ 203 (465)
.-+.|.++||+||+|+||+.+|.++|+.+-+. .-. -+.+++ +..-.+ -+...||++-+.
T Consensus 20 ~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~ 99 (334)
T PRK07993 20 AGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEK 99 (334)
T ss_pred cCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHH
Confidence 34678999999999999999999999997441 000 001111 000001 123456666555
Q ss_pred HHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCCh
Q 012383 204 AADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYA 283 (465)
Q Consensus 204 A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ 283 (465)
+...-..+...|+|||+.|++- ..-...|+..++ ++..++.+|.+|++++.|.|
T Consensus 100 ~~~~~~~g~~kV~iI~~ae~m~-------------~~AaNaLLKtLE-------------EPp~~t~fiL~t~~~~~lLp 153 (334)
T PRK07993 100 LYEHARLGGAKVVWLPDAALLT-------------DAAANALLKTLE-------------EPPENTWFFLACREPARLLA 153 (334)
T ss_pred HhhccccCCceEEEEcchHhhC-------------HHHHHHHHHHhc-------------CCCCCeEEEEEECChhhChH
Confidence 4222235677899999998753 222345666666 66778899999999999999
Q ss_pred hhhcCCCceEEEe-CCCHHHHHHHHHHhccCCCCChh---HHHHHhcCCCchhhH
Q 012383 284 PLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVADD---DIVKLVDTFPGQSID 334 (465)
Q Consensus 284 ALlR~GRfd~~i~-~P~~e~R~~Il~~~l~~~~v~~~---~la~lt~gfsgadld 334 (465)
-++. |+..+.. .|+.++..+.+... .+++.+ .++.++.|=++..++
T Consensus 154 TIrS--RCq~~~~~~~~~~~~~~~L~~~---~~~~~~~a~~~~~la~G~~~~Al~ 203 (334)
T PRK07993 154 TLRS--RCRLHYLAPPPEQYALTWLSRE---VTMSQDALLAALRLSAGAPGAALA 203 (334)
T ss_pred HHHh--ccccccCCCCCHHHHHHHHHHc---cCCCHHHHHHHHHHcCCCHHHHHH
Confidence 9986 6665544 77777777766432 245544 334455554444443
No 193
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.47 E-value=7.7e-07 Score=92.16 Aligned_cols=84 Identities=15% Similarity=0.153 Sum_probs=53.6
Q ss_pred CceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCc-cccCCCccccCCCCCceEEEEeCCCC-CCChhhhcCC
Q 012383 212 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT-CVQLPGMYNKEENPRVPIIVTGNDFS-TLYAPLIRDG 289 (465)
Q Consensus 212 ~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~-~v~l~g~~~~~~~~~V~VI~TTN~~~-~LD~ALlR~G 289 (465)
...+||||||+.+.. .++..|++.++..+ .++-+|.. .....++++|+|.|-.+ .+.++|+.
T Consensus 144 ~~GiL~lDEInrL~~-------------~~Q~~LLeam~e~~~~ier~G~s-~~~p~rfiviaT~np~eg~l~~~Lld-- 207 (350)
T CHL00081 144 NRGILYVDEVNLLDD-------------HLVDILLDSAASGWNTVEREGIS-IRHPARFVLVGSGNPEEGELRPQLLD-- 207 (350)
T ss_pred CCCEEEecChHhCCH-------------HHHHHHHHHHHhCCeEEeeCCee-eecCCCEEEEeccCcccCCCCHHHHH--
Confidence 356999999976532 23344666665211 11112321 12335778888888655 69999987
Q ss_pred CceEEEe--CCC-HHHHHHHHHHhc
Q 012383 290 RMEKFYW--APT-REDRIGVCKGIF 311 (465)
Q Consensus 290 Rfd~~i~--~P~-~e~R~~Il~~~l 311 (465)
||...+. .|+ .+.+.+|++...
T Consensus 208 Rf~l~i~l~~~~~~~~e~~il~~~~ 232 (350)
T CHL00081 208 RFGMHAEIRTVKDPELRVKIVEQRT 232 (350)
T ss_pred HhCceeecCCCCChHHHHHHHHhhh
Confidence 8887777 565 699999998754
No 194
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.45 E-value=9.4e-07 Score=90.73 Aligned_cols=134 Identities=14% Similarity=0.198 Sum_probs=85.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHhCCc-------------------------eEEecccccccCCCC-----ChHHH
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKMGIN-------------------------PIMMSAGELESGNAG-----EPAKL 196 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~elg~~-------------------------~i~vs~s~L~s~~~G-----e~~k~ 196 (465)
+.|.++||+||+|+|||++|+.+|+.+.+. ++.++...- ....| -....
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~-~~~~g~~~~~I~id~ 97 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSD-EPENGRKLLQIKIDA 97 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccc-cccccccCCCcCHHH
Confidence 788999999999999999999999996431 222222100 00011 12456
Q ss_pred HHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeC
Q 012383 197 IRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGN 276 (465)
Q Consensus 197 Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN 276 (465)
||++.+.+...-..+...|++||++|.+... ....|+..++ +...++.+|.+|+
T Consensus 98 iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~-------------a~naLLk~LE-------------ep~~~~~~Ilvth 151 (325)
T PRK08699 98 VREIIDNVYLTSVRGGLRVILIHPAESMNLQ-------------AANSLLKVLE-------------EPPPQVVFLLVSH 151 (325)
T ss_pred HHHHHHHHhhCcccCCceEEEEechhhCCHH-------------HHHHHHHHHH-------------hCcCCCEEEEEeC
Confidence 7776665521112456679999999865321 2233445555 2224467888999
Q ss_pred CCCCCChhhhcCCCceEEEe-CCCHHHHHHHHHH
Q 012383 277 DFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKG 309 (465)
Q Consensus 277 ~~~~LD~ALlR~GRfd~~i~-~P~~e~R~~Il~~ 309 (465)
+++.+.+.+.+ |+-.+.. .|+.++..+.+..
T Consensus 152 ~~~~ll~ti~S--Rc~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 152 AADKVLPTIKS--RCRKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred ChHhChHHHHH--HhhhhcCCCCCHHHHHHHHHh
Confidence 99999999886 5555444 7788877776654
No 195
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.45 E-value=6e-07 Score=96.16 Aligned_cols=140 Identities=12% Similarity=0.132 Sum_probs=71.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHhCC--ceEEeccc-ccccCCCCCh-HHHH--HHHHHHHHHHHHhC---CceEEEec
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAG-ELESGNAGEP-AKLI--RQRYREAADIIKKG---KMCCLMIN 219 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~elg~--~~i~vs~s-~L~s~~~Ge~-~k~I--r~~F~~A~~~i~~~---~p~ILfID 219 (465)
...|||+||||||||++|++++...+. +|...... ..-+...|.. .... ...|.+. ..+ ...+||+|
T Consensus 39 g~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~----~~G~L~~A~lLfLD 114 (498)
T PRK13531 39 GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRL----TSGYLPEAEIVFLD 114 (498)
T ss_pred CCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhh----cCCccccccEEeec
Confidence 357999999999999999999998653 23322111 0111222321 1110 1122211 111 23499999
Q ss_pred ccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCC---CChhhhcCCCceEEEe
Q 012383 220 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFST---LYAPLIRDGRMEKFYW 296 (465)
Q Consensus 220 EIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~---LD~ALlR~GRfd~~i~ 296 (465)
||... +..++..|+..++.- .+..++. ....+..++++|||.... ..+|+.- ||-..+.
T Consensus 115 EI~ra-------------sp~~QsaLLeam~Er-~~t~g~~--~~~lp~rfiv~ATN~LPE~g~~leAL~D--RFliri~ 176 (498)
T PRK13531 115 EIWKA-------------GPAILNTLLTAINER-RFRNGAH--EEKIPMRLLVTASNELPEADSSLEALYD--RMLIRLW 176 (498)
T ss_pred ccccC-------------CHHHHHHHHHHHHhC-eEecCCe--EEeCCCcEEEEECCCCcccCCchHHhHh--hEEEEEE
Confidence 99522 133445666666421 1121111 122233455666674321 2247774 7765666
Q ss_pred --CCC-HHHHHHHHHHh
Q 012383 297 --APT-REDRIGVCKGI 310 (465)
Q Consensus 297 --~P~-~e~R~~Il~~~ 310 (465)
.|+ .++-.+|+...
T Consensus 177 vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 177 LDKVQDKANFRSMLTSQ 193 (498)
T ss_pred CCCCCchHHHHHHHHcc
Confidence 454 45557777654
No 196
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.44 E-value=3.5e-07 Score=94.29 Aligned_cols=85 Identities=16% Similarity=0.177 Sum_probs=55.0
Q ss_pred CCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCc-cccCCCccccCCCCCceEEEEeCCCC-CCChhhhcC
Q 012383 211 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT-CVQLPGMYNKEENPRVPIIVTGNDFS-TLYAPLIRD 288 (465)
Q Consensus 211 ~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~-~v~l~g~~~~~~~~~V~VI~TTN~~~-~LD~ALlR~ 288 (465)
....+||||||+.+. ..+++.|++.++... .++-+|.. .....++.+|+|+|-.+ .|+++|+.
T Consensus 130 A~~GvL~lDEi~~L~-------------~~~Q~~Ll~~l~~g~~~v~r~G~~-~~~~~r~iviat~np~eg~l~~~Lld- 194 (337)
T TIGR02030 130 ANRGILYIDEVNLLE-------------DHLVDVLLDVAASGWNVVEREGIS-IRHPARFVLVGSGNPEEGELRPQLLD- 194 (337)
T ss_pred ccCCEEEecChHhCC-------------HHHHHHHHHHHHhCCeEEEECCEE-EEcCCCEEEEeccccccCCCCHHHHh-
Confidence 345799999998652 234456666665321 12223331 12235778888888655 69999997
Q ss_pred CCceEEEe--CCC-HHHHHHHHHHhc
Q 012383 289 GRMEKFYW--APT-REDRIGVCKGIF 311 (465)
Q Consensus 289 GRfd~~i~--~P~-~e~R~~Il~~~l 311 (465)
||...+. .|. .++|.+|++...
T Consensus 195 -Rf~l~i~l~~p~~~eer~eIL~~~~ 219 (337)
T TIGR02030 195 -RFGLHAEIRTVRDVELRVEIVERRT 219 (337)
T ss_pred -hcceEEECCCCCCHHHHHHHHHhhh
Confidence 8887777 454 488999998754
No 197
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.44 E-value=3e-06 Score=92.09 Aligned_cols=47 Identities=15% Similarity=0.227 Sum_probs=37.4
Q ss_pred HHHHhhhh--CCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEec
Q 012383 135 HITKNFMS--LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 181 (465)
Q Consensus 135 ~i~k~~l~--~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs 181 (465)
..++.++. ..+....+.+||+||||||||++++++|+++|..+....
T Consensus 29 ~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~ 77 (519)
T PF03215_consen 29 EEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWI 77 (519)
T ss_pred HHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEec
Confidence 34566665 234455679999999999999999999999999888743
No 198
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.43 E-value=8e-06 Score=83.73 Aligned_cols=159 Identities=17% Similarity=0.204 Sum_probs=99.6
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEE---------------eccccc--ccC-CCCC--hHHHHHHHHHHH
Q 012383 145 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM---------------MSAGEL--ESG-NAGE--PAKLIRQRYREA 204 (465)
Q Consensus 145 ~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~---------------vs~s~L--~s~-~~Ge--~~k~Ir~~F~~A 204 (465)
.-+.|.++||+||.|+||+.+|+++|+.+-+.--. -+.+++ +.. ..|. +...||++-+.+
T Consensus 21 ~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~l~~~~ 100 (319)
T PRK06090 21 AGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQCNRLA 100 (319)
T ss_pred cCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHHHHHHHHHH
Confidence 34678899999999999999999999986432100 001111 000 0111 234556554443
Q ss_pred HHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChh
Q 012383 205 ADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAP 284 (465)
Q Consensus 205 ~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~A 284 (465)
......+...|++||++|.+- ......|++.++ ++..++.+|.+|+.++.|-|.
T Consensus 101 ~~~~~~~~~kV~iI~~ae~m~-------------~~AaNaLLKtLE-------------EPp~~t~fiL~t~~~~~lLpT 154 (319)
T PRK06090 101 QESSQLNGYRLFVIEPADAMN-------------ESASNALLKTLE-------------EPAPNCLFLLVTHNQKRLLPT 154 (319)
T ss_pred hhCcccCCceEEEecchhhhC-------------HHHHHHHHHHhc-------------CCCCCeEEEEEECChhhChHH
Confidence 111124556799999998752 222345556666 566788999999999999999
Q ss_pred hhcCCCceEEEe-CCCHHHHHHHHHHhccCCCCC-hhHHHHHhcCCCchhhHH
Q 012383 285 LIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVA-DDDIVKLVDTFPGQSIDF 335 (465)
Q Consensus 285 LlR~GRfd~~i~-~P~~e~R~~Il~~~l~~~~v~-~~~la~lt~gfsgadld~ 335 (465)
++. |+-.+.. .|+.++..+.+... +++ ...+..++.|-++..+++
T Consensus 155 I~S--RCq~~~~~~~~~~~~~~~L~~~----~~~~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 155 IVS--RCQQWVVTPPSTAQAMQWLKGQ----GITVPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred HHh--cceeEeCCCCCHHHHHHHHHHc----CCchHHHHHHHcCCCHHHHHHH
Confidence 876 7776655 88888888777543 222 235555666655554443
No 199
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.39 E-value=9e-07 Score=77.07 Aligned_cols=77 Identities=16% Similarity=0.131 Sum_probs=46.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHh--------CCceEEecccccccC------------CCCChHHHHHHHHHHHHHHH
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKM--------GINPIMMSAGELESG------------NAGEPAKLIRQRYREAADII 208 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~el--------g~~~i~vs~s~L~s~------------~~Ge~~k~Ir~~F~~A~~~i 208 (465)
.+.++++||||+|||++++.++..+ ..+++.++.+...+. ...........+++...+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 4678999999999999999999997 677777665433210 00001001122223333334
Q ss_pred HhCCceEEEeccccccc
Q 012383 209 KKGKMCCLMINDLDAGA 225 (465)
Q Consensus 209 ~~~~p~ILfIDEIDai~ 225 (465)
......+|+|||+|.+.
T Consensus 84 ~~~~~~~lviDe~~~l~ 100 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF 100 (131)
T ss_dssp HHCTEEEEEEETTHHHH
T ss_pred HhcCCeEEEEeChHhcC
Confidence 56666799999999865
No 200
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.36 E-value=1.7e-06 Score=80.03 Aligned_cols=117 Identities=16% Similarity=0.179 Sum_probs=73.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHhCCc-----------------------eEEecccccccCCCCChHHHHHHHHHH
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------------------PIMMSAGELESGNAGEPAKLIRQRYRE 203 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~elg~~-----------------------~i~vs~s~L~s~~~Ge~~k~Ir~~F~~ 203 (465)
+.|..+||+||+|+||+++|+++|+.+-.. ++.++...-. +. -....+|.+...
T Consensus 17 ~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~-~~--i~i~~ir~i~~~ 93 (162)
T PF13177_consen 17 RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKK-KS--IKIDQIREIIEF 93 (162)
T ss_dssp C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSS-SS--BSHHHHHHHHHH
T ss_pred CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEeccccc-ch--hhHHHHHHHHHH
Confidence 668899999999999999999999995332 2222211110 00 123455655554
Q ss_pred HHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCCh
Q 012383 204 AADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYA 283 (465)
Q Consensus 204 A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ 283 (465)
....-..+...|++|||+|.+. ...+..|+..|+ ++..++.+|.+|+.++.|.|
T Consensus 94 ~~~~~~~~~~KviiI~~ad~l~-------------~~a~NaLLK~LE-------------epp~~~~fiL~t~~~~~il~ 147 (162)
T PF13177_consen 94 LSLSPSEGKYKVIIIDEADKLT-------------EEAQNALLKTLE-------------EPPENTYFILITNNPSKILP 147 (162)
T ss_dssp CTSS-TTSSSEEEEEETGGGS--------------HHHHHHHHHHHH-------------STTTTEEEEEEES-GGGS-H
T ss_pred HHHHHhcCCceEEEeehHhhhh-------------HHHHHHHHHHhc-------------CCCCCEEEEEEECChHHChH
Confidence 4111114567899999998653 233445666666 55678899999999999999
Q ss_pred hhhcCCCceEE
Q 012383 284 PLIRDGRMEKF 294 (465)
Q Consensus 284 ALlR~GRfd~~ 294 (465)
.++. |+-.+
T Consensus 148 TI~S--Rc~~i 156 (162)
T PF13177_consen 148 TIRS--RCQVI 156 (162)
T ss_dssp HHHT--TSEEE
T ss_pred HHHh--hceEE
Confidence 9986 55443
No 201
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.30 E-value=1.2e-06 Score=91.24 Aligned_cols=32 Identities=31% Similarity=0.609 Sum_probs=28.5
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCC
Q 012383 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGI 175 (465)
Q Consensus 144 ~~~~~p~glLL~GPPGtGKT~LAraIA~elg~ 175 (465)
+...+|+||.||||+|+|||+|.-+....+..
T Consensus 57 ~~~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~ 88 (362)
T PF03969_consen 57 PPPPPPKGLYLWGPVGRGKTMLMDLFYDSLPI 88 (362)
T ss_pred ccCCCCceEEEECCCCCchhHHHHHHHHhCCc
Confidence 35678999999999999999999999998755
No 202
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.28 E-value=3.3e-06 Score=75.07 Aligned_cols=115 Identities=15% Similarity=0.149 Sum_probs=62.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCceEEeccccccc----------------------CCCCChHHHHHHHHHHHHH
Q 012383 152 LGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELES----------------------GNAGEPAKLIRQRYREAAD 206 (465)
Q Consensus 152 lLL~GPPGtGKT~LAraIA~el---g~~~i~vs~s~L~s----------------------~~~Ge~~k~Ir~~F~~A~~ 206 (465)
++|+||||+|||+++..++... +.+++.++...... .+..... .......+..
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 79 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPA--AARLLSKAER 79 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCc--HHHHHHHHHH
Confidence 6899999999999999998886 45555554432211 1111111 1111111222
Q ss_pred HHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCC
Q 012383 207 IIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLY 282 (465)
Q Consensus 207 ~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD 282 (465)
.+....|.+|+|||+..+....... .......+...+.+++. . ....++.+|++++......
T Consensus 80 ~~~~~~~~~lviDe~~~~~~~~~~~--~~~~~~~~~~~l~~l~~---------~---~~~~~~~vv~~~~~~~~~~ 141 (165)
T cd01120 80 LRERGGDDLIILDELTRLVRALREI--REGYPGELDEELRELLE---------R---ARKGGVTVIFTLQVPSGDK 141 (165)
T ss_pred HHhCCCCEEEEEEcHHHHHHHHHHH--HhcCChHHHHHHHHHHH---------H---HhcCCceEEEEEecCCccc
Confidence 3357889999999998775432100 00011223333433333 1 1224678888887765443
No 203
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.26 E-value=3.6e-06 Score=86.52 Aligned_cols=132 Identities=15% Similarity=0.196 Sum_probs=77.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEecccccccCCCCChHHHHHHHHHHHH-----------HHHHhCCce
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAA-----------DIIKKGKMC 214 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~-----------~~i~~~~p~ 214 (465)
...|||+|++||||+++|++|.... +.+|+.++++.+-... .-..+|.... ..+......
T Consensus 22 ~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~------l~~~lfG~~~g~~~ga~~~~~G~~~~a~gG 95 (329)
T TIGR02974 22 DRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENL------LDSELFGHEAGAFTGAQKRHQGRFERADGG 95 (329)
T ss_pred CCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHH------HHHHHhccccccccCcccccCCchhhCCCC
Confidence 4679999999999999999998765 3589999988653211 1122332110 011233567
Q ss_pred EEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC-------CCCChhhhc
Q 012383 215 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF-------STLYAPLIR 287 (465)
Q Consensus 215 ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~-------~~LD~ALlR 287 (465)
.|||||||.+.. .++.-|+.++++.....+.+. .....++-||++||.. ..+.+.|..
T Consensus 96 tL~Ldei~~L~~-------------~~Q~~Ll~~l~~~~~~~~g~~--~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~ 160 (329)
T TIGR02974 96 TLFLDELATASL-------------LVQEKLLRVIEYGEFERVGGS--QTLQVDVRLVCATNADLPALAAEGRFRADLLD 160 (329)
T ss_pred EEEeCChHhCCH-------------HHHHHHHHHHHcCcEEecCCC--ceeccceEEEEechhhHHHHhhcCchHHHHHH
Confidence 999999987642 234455556653221111111 1123567899999863 234455553
Q ss_pred CCCceE-EEeCCCHHHH
Q 012383 288 DGRMEK-FYWAPTREDR 303 (465)
Q Consensus 288 ~GRfd~-~i~~P~~e~R 303 (465)
|+.. .|.+|...+|
T Consensus 161 --rl~~~~i~lPpLReR 175 (329)
T TIGR02974 161 --RLAFDVITLPPLRER 175 (329)
T ss_pred --HhcchhcCCCchhhh
Confidence 5543 3446766666
No 204
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.23 E-value=7e-07 Score=89.48 Aligned_cols=142 Identities=14% Similarity=0.201 Sum_probs=78.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHhCCce-E--EecccccccCCCCChHHHHHHHHHHHHHH-----H--HhCCceEEEe
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKMGINP-I--MMSAGELESGNAGEPAKLIRQRYREAADI-----I--KKGKMCCLMI 218 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~elg~~~-i--~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~-----i--~~~~p~ILfI 218 (465)
-+.+||.||+|||||.+++..-..+.-.- + .+..+.. -+...+....+...+. . ..++.+|+||
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~------Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fi 106 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQ------TTSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFI 106 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TT------HHHHHHHHCCCTTECECTTEEEEEESSSEEEEEE
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCC------CCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEe
Confidence 36899999999999999998776654322 2 2222210 1122222221110000 0 1345679999
Q ss_pred cccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccC-----CCCCceEEEEeCCCC---CCChhhhcCCC
Q 012383 219 NDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE-----ENPRVPIIVTGNDFS---TLYAPLIRDGR 290 (465)
Q Consensus 219 DEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~-----~~~~V~VI~TTN~~~---~LD~ALlR~GR 290 (465)
||+..-..+.. ..+...++|-+++|. .|+|... ...++.+|+++|... .|++-|+| .
T Consensus 107 DDlN~p~~d~y-------gtq~~iElLRQ~i~~------~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~ 171 (272)
T PF12775_consen 107 DDLNMPQPDKY-------GTQPPIELLRQLIDY------GGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--H 171 (272)
T ss_dssp ETTT-S---TT-------S--HHHHHHHHHHHC------SEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--T
T ss_pred cccCCCCCCCC-------CCcCHHHHHHHHHHh------cCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--h
Confidence 99975443332 123345677777773 2444432 236788999988532 47888887 5
Q ss_pred ceEEEe-CCCHHHHHHHHHHhc
Q 012383 291 MEKFYW-APTREDRIGVCKGIF 311 (465)
Q Consensus 291 fd~~i~-~P~~e~R~~Il~~~l 311 (465)
|-.... .|+.+....|+..++
T Consensus 172 f~i~~~~~p~~~sl~~If~~il 193 (272)
T PF12775_consen 172 FNILNIPYPSDESLNTIFSSIL 193 (272)
T ss_dssp EEEEE----TCCHHHHHHHHHH
T ss_pred eEEEEecCCChHHHHHHHHHHH
Confidence 554444 899999988865554
No 205
>PF13173 AAA_14: AAA domain
Probab=98.23 E-value=6.9e-06 Score=72.50 Aligned_cols=69 Identities=14% Similarity=0.185 Sum_probs=44.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhC--CceEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccc
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKMG--INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAG 224 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~elg--~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai 224 (465)
+.++|+||.|||||++++.+++++. -+++.++..+......-... +.+.|.+. ....+.+|||||+..+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~----~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLEL----IKPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHh----hccCCcEEEEehhhhh
Confidence 5789999999999999999999876 67777776644321000000 11111111 1236789999999654
No 206
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.22 E-value=6e-06 Score=84.69 Aligned_cols=132 Identities=15% Similarity=0.205 Sum_probs=76.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEecccccccCCCCChHHHHHHHHHHH-----------HHHHHhCCce
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREA-----------ADIIKKGKMC 214 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A-----------~~~i~~~~p~ 214 (465)
+..|||+|++||||+++|++|-... +.+|+.+++..+-.. ..-..+|... ...+......
T Consensus 29 ~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~------~~~~~lfg~~~~~~~g~~~~~~g~l~~a~gG 102 (326)
T PRK11608 29 DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNEN------LLDSELFGHEAGAFTGAQKRHPGRFERADGG 102 (326)
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHH------HHHHHHccccccccCCcccccCCchhccCCC
Confidence 4679999999999999999998764 358999998875311 0111222211 0111233457
Q ss_pred EEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC-------CCCChhhhc
Q 012383 215 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF-------STLYAPLIR 287 (465)
Q Consensus 215 ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~-------~~LD~ALlR 287 (465)
.|||||||.+.. .++..|+++++........+. .....++-||+||+.. ..+.+.|..
T Consensus 103 tL~l~~i~~L~~-------------~~Q~~L~~~l~~~~~~~~g~~--~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~ 167 (326)
T PRK11608 103 TLFLDELATAPM-------------LVQEKLLRVIEYGELERVGGS--QPLQVNVRLVCATNADLPAMVAEGKFRADLLD 167 (326)
T ss_pred eEEeCChhhCCH-------------HHHHHHHHHHhcCcEEeCCCC--ceeeccEEEEEeCchhHHHHHHcCCchHHHHH
Confidence 899999987643 234455556652211111111 0112457889988763 345566654
Q ss_pred CCCce-EEEeCCCHHHH
Q 012383 288 DGRME-KFYWAPTREDR 303 (465)
Q Consensus 288 ~GRfd-~~i~~P~~e~R 303 (465)
||. ..+.+|...+|
T Consensus 168 --~l~~~~i~lPpLReR 182 (326)
T PRK11608 168 --RLAFDVVQLPPLRER 182 (326)
T ss_pred --hcCCCEEECCChhhh
Confidence 663 45557776666
No 207
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.20 E-value=1.4e-06 Score=90.28 Aligned_cols=55 Identities=22% Similarity=0.311 Sum_probs=43.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHhC--CceEEecccccccCCCCChHHHHHHHHHHH
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKMG--INPIMMSAGELESGNAGEPAKLIRQRYREA 204 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~elg--~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A 204 (465)
-+++||.||||||||.||-+||+++| +||+.++++++.+.-+-.++. +.+.|++|
T Consensus 50 Gr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~e~kKTE~-L~qa~Rra 106 (398)
T PF06068_consen 50 GRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSSEVKKTEA-LTQAFRRA 106 (398)
T ss_dssp T-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BTTC-HHHH-HHHHHHCS
T ss_pred CcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeecccCchHH-HHHHHHHh
Confidence 58999999999999999999999998 799999999999888877763 45667765
No 208
>PF05729 NACHT: NACHT domain
Probab=98.20 E-value=2.1e-05 Score=70.53 Aligned_cols=145 Identities=21% Similarity=0.243 Sum_probs=75.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhCC---------ceEEecccccccCC-CCChHHHHHHHHHH--------HHHHHHhC
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKMGI---------NPIMMSAGELESGN-AGEPAKLIRQRYRE--------AADIIKKG 211 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~elg~---------~~i~vs~s~L~s~~-~Ge~~k~Ir~~F~~--------A~~~i~~~ 211 (465)
+-++|+|+||+|||++++.++..+.. .++........... ...-...|...+.. ....+...
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKN 80 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcC
Confidence 35899999999999999999988521 12233333222110 00001111111111 11233467
Q ss_pred CceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhhcCCCc
Q 012383 212 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 291 (465)
Q Consensus 212 ~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRf 291 (465)
...+|+||-+|.+...... .........|.+++. . ...+++.+|+|++. ...+. +.+...-
T Consensus 81 ~~~llilDglDE~~~~~~~-----~~~~~~~~~l~~l~~--------~----~~~~~~~liit~r~-~~~~~-~~~~~~~ 141 (166)
T PF05729_consen 81 KRVLLILDGLDELEEQDQS-----QERQRLLDLLSQLLP--------Q----ALPPGVKLIITSRP-RAFPD-LRRRLKQ 141 (166)
T ss_pred CceEEEEechHhcccchhh-----hHHHHHHHHHHHHhh--------h----ccCCCCeEEEEEcC-ChHHH-HHHhcCC
Confidence 7889999999998764321 011222333434443 1 12356677877753 33322 2221111
Q ss_pred eEEEe--CCCHHHHHHHHHHhccC
Q 012383 292 EKFYW--APTREDRIGVCKGIFRN 313 (465)
Q Consensus 292 d~~i~--~P~~e~R~~Il~~~l~~ 313 (465)
...+. .-+.+++.++++.+++.
T Consensus 142 ~~~~~l~~~~~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 142 AQILELEPFSEEDIKQYLRKYFSN 165 (166)
T ss_pred CcEEEECCCCHHHHHHHHHHHhhc
Confidence 12344 55888888988888754
No 209
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.19 E-value=2e-05 Score=85.78 Aligned_cols=185 Identities=15% Similarity=0.204 Sum_probs=97.3
Q ss_pred cccccccCCCCCchhHHHHHHHHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEecccccccCC
Q 012383 113 YNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGN 189 (465)
Q Consensus 113 ~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~s~L~s~~ 189 (465)
++|+++++. ++.+ +.+.+.++.+.. ...-|||+|++||||+++|++|-... ..+|+.+++..+-...
T Consensus 201 ~~f~~~ig~---s~~~--~~~~~~~~~~A~-----~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~~ 270 (520)
T PRK10820 201 SAFSQIVAV---SPKM--RQVVEQARKLAM-----LDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDV 270 (520)
T ss_pred ccccceeEC---CHHH--HHHHHHHHHHhC-----CCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHHH
Confidence 466777665 2322 223333444332 23449999999999999999986654 3578999988764210
Q ss_pred CCChHHHHHHHHHHHH-----------HHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCC
Q 012383 190 AGEPAKLIRQRYREAA-----------DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLP 258 (465)
Q Consensus 190 ~Ge~~k~Ir~~F~~A~-----------~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~ 258 (465)
.-..+|..+. ..+.......|||||||.+... ++.-|++++.+.+.....
T Consensus 271 ------~e~elFG~~~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L~~~-------------~Q~~Ll~~l~~~~~~~~g 331 (520)
T PRK10820 271 ------VESELFGHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEMSPR-------------MQAKLLRFLNDGTFRRVG 331 (520)
T ss_pred ------HHHHhcCCCCCCcCCcccCCCChhhhcCCCEEEEeChhhCCHH-------------HHHHHHHHHhcCCcccCC
Confidence 1112232110 0112234578999999876432 234455555532211111
Q ss_pred CccccCCCCCceEEEEeCCCC-------CCChhhhcCCCceE-EEeCCCHHHHH-HH---HHHhcc---------CCCCC
Q 012383 259 GMYNKEENPRVPIIVTGNDFS-------TLYAPLIRDGRMEK-FYWAPTREDRI-GV---CKGIFR---------NDNVA 317 (465)
Q Consensus 259 g~~~~~~~~~V~VI~TTN~~~-------~LD~ALlR~GRfd~-~i~~P~~e~R~-~I---l~~~l~---------~~~v~ 317 (465)
+. .....++-||+||+..- .+.+.|.. |+.. .+.+|...+|. +| ++.++. ...++
T Consensus 332 ~~--~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls 407 (520)
T PRK10820 332 ED--HEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLA 407 (520)
T ss_pred CC--cceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcC
Confidence 11 11124677899887641 23344443 4433 33467666664 44 222221 12456
Q ss_pred hhHHHHHhcC-CCc
Q 012383 318 DDDIVKLVDT-FPG 330 (465)
Q Consensus 318 ~~~la~lt~g-fsg 330 (465)
.+.+..+... |+|
T Consensus 408 ~~a~~~L~~y~WPG 421 (520)
T PRK10820 408 ADLNTVLTRYGWPG 421 (520)
T ss_pred HHHHHHHhcCCCCC
Confidence 6666666544 666
No 210
>PHA00729 NTP-binding motif containing protein
Probab=98.19 E-value=4.3e-06 Score=81.68 Aligned_cols=26 Identities=23% Similarity=0.201 Sum_probs=23.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhCC
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKMGI 175 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~elg~ 175 (465)
..++|+|+||||||++|.+|+++++.
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~~ 43 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVFW 43 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 48999999999999999999999864
No 211
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.19 E-value=2.1e-06 Score=88.14 Aligned_cols=57 Identities=23% Similarity=0.210 Sum_probs=49.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHhC--CceEEecccccccCCCCChHHHHHHHHHHH
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKMG--INPIMMSAGELESGNAGEPAKLIRQRYREA 204 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~elg--~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A 204 (465)
..-+|||+.||||||||.||-+||+++| .||+.++++++.+--+..++.+ .+.|++|
T Consensus 63 ~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~E~kKTE~L-~qa~Rra 121 (450)
T COG1224 63 MAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEVKKTEAL-TQALRRA 121 (450)
T ss_pred ccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeeeecccHHHHH-HHHHHHh
Confidence 3458999999999999999999999997 6999999999999888888765 4667777
No 212
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.15 E-value=5.8e-06 Score=90.04 Aligned_cols=110 Identities=11% Similarity=0.126 Sum_probs=65.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEecccccccCCCCChHHHHHHHHHHHH-----------HHHHhCCc
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAA-----------DIIKKGKM 213 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~-----------~~i~~~~p 213 (465)
....|||+|++|||||++|++|.... +.+|+.+++..+-..+ .-..+|.... ..+.....
T Consensus 218 ~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~~------~~~~lfg~~~~~~~~~~~~~~g~~~~a~~ 291 (534)
T TIGR01817 218 SNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETL------LESELFGHEKGAFTGAIAQRKGRFELADG 291 (534)
T ss_pred cCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHHH------HHHHHcCCCCCccCCCCcCCCCcccccCC
Confidence 34579999999999999999999884 4589999998763211 1112222110 00122345
Q ss_pred eEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC
Q 012383 214 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF 278 (465)
Q Consensus 214 ~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~ 278 (465)
..|||||||.+.. .++..|++++++.......+. .....++-+|+|||..
T Consensus 292 GtL~ldei~~L~~-------------~~Q~~Ll~~l~~~~~~~~~~~--~~~~~~~riI~~s~~~ 341 (534)
T TIGR01817 292 GTLFLDEIGEISP-------------AFQAKLLRVLQEGEFERVGGN--RTLKVDVRLVAATNRD 341 (534)
T ss_pred CeEEEechhhCCH-------------HHHHHHHHHHhcCcEEECCCC--ceEeecEEEEEeCCCC
Confidence 7899999987642 234456666652211111111 0112357899998764
No 213
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.14 E-value=2e-05 Score=86.68 Aligned_cols=137 Identities=20% Similarity=0.276 Sum_probs=91.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhC----------CceEEecccccccC----------CCCCh------HHHHHHHHHHH
Q 012383 151 ILGIWGGKGQGKSFQCELVFAKMG----------INPIMMSAGELESG----------NAGEP------AKLIRQRYREA 204 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~elg----------~~~i~vs~s~L~s~----------~~Ge~------~k~Ir~~F~~A 204 (465)
.+.+.|-||||||.+++.|-++|. +.++.+++-.|.+. +-|+. -..++..|...
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~ 503 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP 503 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccC
Confidence 677889999999999999998753 45677777665432 33332 12233333311
Q ss_pred HHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChh
Q 012383 205 ADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAP 284 (465)
Q Consensus 205 ~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~A 284 (465)
-....++||+|||+|.++.+.. ..|+|++| |......++.||+.+|..+ |++-
T Consensus 504 ---k~~~~~~VvLiDElD~Lvtr~Q-------------dVlYn~fd----------Wpt~~~sKLvvi~IaNTmd-lPEr 556 (767)
T KOG1514|consen 504 ---KPKRSTTVVLIDELDILVTRSQ-------------DVLYNIFD----------WPTLKNSKLVVIAIANTMD-LPER 556 (767)
T ss_pred ---CCCCCCEEEEeccHHHHhcccH-------------HHHHHHhc----------CCcCCCCceEEEEeccccc-CHHH
Confidence 0156789999999999987642 45777777 4556678899999999876 3333
Q ss_pred hhc---CCC--ceEEEe-CCCHHHHHHHHHHhccCC
Q 012383 285 LIR---DGR--MEKFYW-APTREDRIGVCKGIFRND 314 (465)
Q Consensus 285 LlR---~GR--fd~~i~-~P~~e~R~~Il~~~l~~~ 314 (465)
++- ..| +-+..+ ..+.++..+|+..-+...
T Consensus 557 ~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~ 592 (767)
T KOG1514|consen 557 LLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL 592 (767)
T ss_pred HhccchhhhccceeeecCCCCHHHHHHHHHHhhcch
Confidence 321 112 233334 889999999988777654
No 214
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.13 E-value=5.6e-06 Score=89.62 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHH
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~e 172 (465)
...++|.||||||||+++++++.-
T Consensus 211 g~~vlliG~pGsGKTtlar~l~~l 234 (499)
T TIGR00368 211 GHNLLLFGPPGSGKTMLASRLQGI 234 (499)
T ss_pred CCEEEEEecCCCCHHHHHHHHhcc
Confidence 367999999999999999999874
No 215
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.13 E-value=1e-05 Score=89.97 Aligned_cols=134 Identities=13% Similarity=0.114 Sum_probs=76.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHhC---CceEEecccccccCCCCChHHHHHHHHHHH---H-----HHHHhCCceEEE
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGELESGNAGEPAKLIRQRYREA---A-----DIIKKGKMCCLM 217 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~elg---~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A---~-----~~i~~~~p~ILf 217 (465)
...|||+|++||||+++|++|.+... .+|+.++++.+-. +..-.++|... . ..+.......||
T Consensus 348 ~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~------~~~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ 421 (638)
T PRK11388 348 SFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD------EALAEEFLGSDRTDSENGRLSKFELAHGGTLF 421 (638)
T ss_pred CCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh------HHHHHHhcCCCCcCccCCCCCceeECCCCEEE
Confidence 34599999999999999999988753 5899999876531 11112233211 0 011223467899
Q ss_pred ecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhhcCCCc------
Q 012383 218 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM------ 291 (465)
Q Consensus 218 IDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRf------ 291 (465)
|||||.+.. .++..|+.+++......+.+. ....-++-||+|||..- ..+...|+|
T Consensus 422 ldei~~l~~-------------~~Q~~Ll~~l~~~~~~~~~~~--~~~~~~~riI~~t~~~l---~~~~~~~~f~~dL~~ 483 (638)
T PRK11388 422 LEKVEYLSP-------------ELQSALLQVLKTGVITRLDSR--RLIPVDVRVIATTTADL---AMLVEQNRFSRQLYY 483 (638)
T ss_pred EcChhhCCH-------------HHHHHHHHHHhcCcEEeCCCC--ceEEeeEEEEEeccCCH---HHHHhcCCChHHHhh
Confidence 999987543 233455566652221111111 00112567999998642 223334555
Q ss_pred ---eEEEeCCCHHHH-HHH
Q 012383 292 ---EKFYWAPTREDR-IGV 306 (465)
Q Consensus 292 ---d~~i~~P~~e~R-~~I 306 (465)
...+.+|...+| .+|
T Consensus 484 ~l~~~~i~lPpLreR~~Di 502 (638)
T PRK11388 484 ALHAFEITIPPLRMRREDI 502 (638)
T ss_pred hhceeEEeCCChhhhhhHH
Confidence 334447777777 344
No 216
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.11 E-value=8.4e-05 Score=75.37 Aligned_cols=205 Identities=15% Similarity=0.178 Sum_probs=108.7
Q ss_pred HHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhC---------CceEEecccccccC---------CCCC---
Q 012383 134 VHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMG---------INPIMMSAGELESG---------NAGE--- 192 (465)
Q Consensus 134 ~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg---------~~~i~vs~s~L~s~---------~~Ge--- 192 (465)
+......+..|....+.++||+|++|.|||++++..+.... ++++.+..+.--+. ..|.
T Consensus 46 L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~ 125 (302)
T PF05621_consen 46 LDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYR 125 (302)
T ss_pred HHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccC
Confidence 33444555556555566899999999999999999987742 34555443211000 0011
Q ss_pred hHHHHHHHHHHHHHHHHhCCceEEEeccccccc-CCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceE
Q 012383 193 PAKLIRQRYREAADIIKKGKMCCLMINDLDAGA-GRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI 271 (465)
Q Consensus 193 ~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~-~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~V 271 (465)
+...+......+..+++...+.+|+|||+..+. ++.. .+ +.+-++|-.|.+ .-++++
T Consensus 126 ~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~--~q-----r~~Ln~LK~L~N---------------eL~ipi 183 (302)
T PF05621_consen 126 PRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYR--KQ-----REFLNALKFLGN---------------ELQIPI 183 (302)
T ss_pred CCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHH--HH-----HHHHHHHHHHhh---------------ccCCCe
Confidence 111223344445567788899999999998764 3321 11 223333322222 235667
Q ss_pred EEEeCCC----CCCChhhhcCCCceEEEe---CCCHHHHHHH--HHHhc---cCCCCChhHHHHHhcCCCchhhHHHHHH
Q 012383 272 IVTGNDF----STLYAPLIRDGRMEKFYW---APTREDRIGV--CKGIF---RNDNVADDDIVKLVDTFPGQSIDFFGAL 339 (465)
Q Consensus 272 I~TTN~~----~~LD~ALlR~GRfd~~i~---~P~~e~R~~I--l~~~l---~~~~v~~~~la~lt~gfsgadld~~~al 339 (465)
|+..... =.-|+.|-+ ||+.+.. .++.+-+.-+ +...+ +..++...+++......|+.-|.-+..|
T Consensus 184 V~vGt~~A~~al~~D~QLa~--RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~l 261 (302)
T PF05621_consen 184 VGVGTREAYRALRTDPQLAS--RFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSRL 261 (302)
T ss_pred EEeccHHHHHHhccCHHHHh--ccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHH
Confidence 6665321 133566665 7877655 5555554322 22222 2345666667666555555544322222
Q ss_pred HhhhhHHHHHHHHHhhcCccchhhhhcC
Q 012383 340 RARVYDDEVRKWISGVGVGSIGKSLVNS 367 (465)
Q Consensus 340 ra~~~~~~v~~~i~~~~~e~l~~~lv~~ 367 (465)
-......+|+ .|.|.|....++.
T Consensus 262 l~~aA~~AI~-----sG~E~It~~~l~~ 284 (302)
T PF05621_consen 262 LNAAAIAAIR-----SGEERITREILDK 284 (302)
T ss_pred HHHHHHHHHh-----cCCceecHHHHhh
Confidence 2222222222 2667676655544
No 217
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.06 E-value=1.5e-05 Score=78.02 Aligned_cols=142 Identities=14% Similarity=0.246 Sum_probs=79.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh-CC----ceEEecccccccCCCC-ChHHHHHHHHHHHHHHHHhCCceEEEecccccc
Q 012383 151 ILGIWGGKGQGKSFQCELVFAKM-GI----NPIMMSAGELESGNAG-EPAKLIRQRYREAADIIKKGKMCCLMINDLDAG 224 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~el-g~----~~i~vs~s~L~s~~~G-e~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai 224 (465)
.++|.||||||||+-+.++|.++ |- .++.+++++=. | +..++--..|.+-.-.+..++..||++||.|++
T Consensus 50 ~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeR----GIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSM 125 (333)
T KOG0991|consen 50 NLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDER----GIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSM 125 (333)
T ss_pred ceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCcccc----ccHHHHHHHHHHHHhhccCCCCceeEEEeeccchh
Confidence 68899999999999999999995 42 35556665321 1 112222233444311111466779999999986
Q ss_pred cCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhhcCCCceEEEe-CCCHHHH
Q 012383 225 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDR 303 (465)
Q Consensus 225 ~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~-~P~~e~R 303 (465)
..- ..|.+..++ + ++ ....-++.++|....|-+++.. |+-..-+ ..+..+-
T Consensus 126 T~g---------AQQAlRRtM-E------------iy----S~ttRFalaCN~s~KIiEPIQS--RCAiLRysklsd~qi 177 (333)
T KOG0991|consen 126 TAG---------AQQALRRTM-E------------IY----SNTTRFALACNQSEKIIEPIQS--RCAILRYSKLSDQQI 177 (333)
T ss_pred hhH---------HHHHHHHHH-H------------HH----cccchhhhhhcchhhhhhhHHh--hhHhhhhcccCHHHH
Confidence 321 123333332 2 21 1223477789999999888875 4333222 3344444
Q ss_pred HHHHHHhccCCCC--ChhHHHHH
Q 012383 304 IGVCKGIFRNDNV--ADDDIVKL 324 (465)
Q Consensus 304 ~~Il~~~l~~~~v--~~~~la~l 324 (465)
+.-+....+.+++ +.+.++.+
T Consensus 178 L~Rl~~v~k~Ekv~yt~dgLeai 200 (333)
T KOG0991|consen 178 LKRLLEVAKAEKVNYTDDGLEAI 200 (333)
T ss_pred HHHHHHHHHHhCCCCCcchHHHh
Confidence 4444444444433 33444443
No 218
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=98.04 E-value=8.5e-06 Score=92.89 Aligned_cols=156 Identities=16% Similarity=0.212 Sum_probs=102.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCC-------hHHHHHHHHHH-HHHHHHhCCceEEEecccc
Q 012383 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGE-------PAKLIRQRYRE-AADIIKKGKMCCLMINDLD 222 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge-------~~k~Ir~~F~~-A~~~i~~~~p~ILfIDEID 222 (465)
.+|++||||.|||+.+..+|.++|..++..+++...+++... ....|...|.. ..........-||++||+|
T Consensus 359 ~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD 438 (871)
T KOG1968|consen 359 ALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVD 438 (871)
T ss_pred HHHhcCCCCCCchhhHhhhhhhcccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccc
Confidence 479999999999999999999999999999998776654321 11122222210 0000012223399999999
Q ss_pred cccC-CCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCCh-hhhcCCCceEEEeCCCH
Q 012383 223 AGAG-RMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYA-PLIRDGRMEKFYWAPTR 300 (465)
Q Consensus 223 ai~~-~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~-ALlR~GRfd~~i~~P~~ 300 (465)
.+.+ .|+ .-..+.++. ....+|||+|+|+...-.. ++.|.+ +|..+..|+.
T Consensus 439 ~~~~~dRg-------~v~~l~~l~-------------------~ks~~Piv~~cndr~~p~sr~~~~~~-~~l~f~kP~~ 491 (871)
T KOG1968|consen 439 GMFGEDRG-------GVSKLSSLC-------------------KKSSRPLVCTCNDRNLPKSRALSRAC-SDLRFSKPSS 491 (871)
T ss_pred cccchhhh-------hHHHHHHHH-------------------HhccCCeEEEecCCCCccccchhhhc-ceeeecCCcH
Confidence 8876 222 122233222 1456799999999887666 566544 7777779999
Q ss_pred HHHHHHHHHhccCC--CCChhHHHHHhcCCCchhhH
Q 012383 301 EDRIGVCKGIFRND--NVADDDIVKLVDTFPGQSID 334 (465)
Q Consensus 301 e~R~~Il~~~l~~~--~v~~~~la~lt~gfsgadld 334 (465)
+.+..-+..++..+ .++.+.|.+++... |+||.
T Consensus 492 ~~i~~ri~si~~se~~ki~~~~l~~~s~~~-~~DiR 526 (871)
T KOG1968|consen 492 ELIRSRIMSICKSEGIKISDDVLEEISKLS-GGDIR 526 (871)
T ss_pred HHHHhhhhhhhcccceecCcHHHHHHHHhc-ccCHH
Confidence 98877777766554 45666666666554 66653
No 219
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.99 E-value=0.00014 Score=68.49 Aligned_cols=25 Identities=16% Similarity=0.335 Sum_probs=23.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHh
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~el 173 (465)
...++|+||.|+|||+|++.+.+.+
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHh
Confidence 5689999999999999999999987
No 220
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.99 E-value=4.5e-05 Score=72.40 Aligned_cols=83 Identities=13% Similarity=0.229 Sum_probs=52.9
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHHHH---hCCceEEecccccc--------cCCCCC-----------hHHHHHHHH
Q 012383 144 PNIKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELE--------SGNAGE-----------PAKLIRQRY 201 (465)
Q Consensus 144 ~~~~~p~glLL~GPPGtGKT~LAraIA~e---lg~~~i~vs~s~L~--------s~~~Ge-----------~~k~Ir~~F 201 (465)
.|++....++|+||||||||+++..++.+ .|...++++..++. ..+.+. ........+
T Consensus 7 GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 86 (209)
T TIGR02237 7 GGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAI 86 (209)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHH
Confidence 47777789999999999999999988865 35567777765410 000000 000011123
Q ss_pred HHHHHHHHhCCceEEEecccccccC
Q 012383 202 REAADIIKKGKMCCLMINDLDAGAG 226 (465)
Q Consensus 202 ~~A~~~i~~~~p~ILfIDEIDai~~ 226 (465)
....+.+....+++|+||-|.++..
T Consensus 87 ~~l~~~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 87 QKTSKFIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HHHHHHHhhcCccEEEEeCcHHHhH
Confidence 3333344566899999999998854
No 221
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=97.97 E-value=4.8e-05 Score=82.55 Aligned_cols=136 Identities=15% Similarity=0.146 Sum_probs=76.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEecccccccCCCCChHHHHHHHHHHHH-----------HHHHhCCc
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAA-----------DIIKKGKM 213 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~-----------~~i~~~~p 213 (465)
.+..|||+|++||||+++|++|.... +.+|+.+++..+-+.. .-..+|.... ..+.....
T Consensus 209 ~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~------~e~~lfG~~~g~~~ga~~~~~g~~~~a~g 282 (509)
T PRK05022 209 SDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESL------AESELFGHVKGAFTGAISNRSGKFELADG 282 (509)
T ss_pred CCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHH------HHHHhcCccccccCCCcccCCcchhhcCC
Confidence 35679999999999999999998884 4689999988763211 0112222110 01122345
Q ss_pred eEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC-------CCChhhh
Q 012383 214 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-------TLYAPLI 286 (465)
Q Consensus 214 ~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~-------~LD~ALl 286 (465)
..|||||||.+... ++.-|++++++.....+.+. .....++-||+|||..- .+.+.|.
T Consensus 283 GtL~ldeI~~L~~~-------------~Q~~Ll~~l~~~~~~~~g~~--~~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~ 347 (509)
T PRK05022 283 GTLFLDEIGELPLA-------------LQAKLLRVLQYGEIQRVGSD--RSLRVDVRVIAATNRDLREEVRAGRFRADLY 347 (509)
T ss_pred CEEEecChhhCCHH-------------HHHHHHHHHhcCCEeeCCCC--cceecceEEEEecCCCHHHHHHcCCccHHHH
Confidence 68999999976532 23445555552221111111 11234678999998742 2333333
Q ss_pred cCCCceE-EEeCCCHHHH-HHH
Q 012383 287 RDGRMEK-FYWAPTREDR-IGV 306 (465)
Q Consensus 287 R~GRfd~-~i~~P~~e~R-~~I 306 (465)
. |+.. .|.+|...+| .+|
T Consensus 348 ~--rl~~~~i~lPpLreR~eDI 367 (509)
T PRK05022 348 H--RLSVFPLSVPPLRERGDDV 367 (509)
T ss_pred h--cccccEeeCCCchhchhhH
Confidence 2 3332 2446766666 445
No 222
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.96 E-value=7.9e-05 Score=66.58 Aligned_cols=44 Identities=32% Similarity=0.564 Sum_probs=38.2
Q ss_pred HHHHHHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHh
Q 012383 130 DKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 130 d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~el 173 (465)
-+.++..++.|+..+.-+.|.-+-|+||||||||++++.||+.+
T Consensus 34 ~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 34 VEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 34567778888888888889999999999999999999999994
No 223
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=97.96 E-value=2.3e-05 Score=89.26 Aligned_cols=133 Identities=12% Similarity=0.130 Sum_probs=74.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhCC-------ceEEeccccccc-C--CCCChHHHHHHHHHHHHHHHHhCCceEEEec
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKMGI-------NPIMMSAGELES-G--NAGEPAKLIRQRYREAADIIKKGKMCCLMIN 219 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~elg~-------~~i~vs~s~L~s-~--~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfID 219 (465)
..|||+|+||||||.+|++|++-... ++..+....... . ..|+ |..-...+......+++||
T Consensus 493 ihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~~~d~~tG~--------~~le~GaLvlAdgGtL~ID 564 (915)
T PTZ00111 493 INVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKFNESDNGR--------AMIQPGAVVLANGGVCCID 564 (915)
T ss_pred ceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhhhcccccCc--------ccccCCcEEEcCCCeEEec
Confidence 37999999999999999999885432 222211111100 0 0010 0000001112334699999
Q ss_pred ccccccCCCCCCcccchhhHHHHHHHHHhhcCCcc-ccCCCccccCCCCCceEEEEeCCC-------------CCCChhh
Q 012383 220 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTC-VQLPGMYNKEENPRVPIIVTGNDF-------------STLYAPL 285 (465)
Q Consensus 220 EIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~-v~l~g~~~~~~~~~V~VI~TTN~~-------------~~LD~AL 285 (465)
|+|++.. ..+..|++.|...+. +.-.|. ...-..++-||+|+|-. -.|+++|
T Consensus 565 Eidkms~-------------~~Q~aLlEaMEqqtIsI~KaGi-~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~L 630 (915)
T PTZ00111 565 ELDKCHN-------------ESRLSLYEVMEQQTVTIAKAGI-VATLKAETAILASCNPINSRYNKNKAVIENINISPSL 630 (915)
T ss_pred chhhCCH-------------HHHHHHHHHHhCCEEEEecCCc-ceecCCCeEEEEEcCCcccccCcccCcccccCCChHH
Confidence 9997632 223445555552221 111122 01224678899999974 2578999
Q ss_pred hcCCCceEEEe---CCCHHHHHHH
Q 012383 286 IRDGRMEKFYW---APTREDRIGV 306 (465)
Q Consensus 286 lR~GRfd~~i~---~P~~e~R~~I 306 (465)
+. |||.++. .|+.+.=..|
T Consensus 631 LS--RFDLIf~l~D~~d~~~D~~l 652 (915)
T PTZ00111 631 FT--RFDLIYLVLDHIDQDTDQLI 652 (915)
T ss_pred hh--hhcEEEEecCCCChHHHHHH
Confidence 96 9999888 6776654454
No 224
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=97.95 E-value=3.6e-05 Score=86.39 Aligned_cols=109 Identities=14% Similarity=0.153 Sum_probs=64.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEeccccccc-----CCCCChH-------HHHHHHHHHHHHHHHhCC
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELES-----GNAGEPA-------KLIRQRYREAADIIKKGK 212 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~s~L~s-----~~~Ge~~-------k~Ir~~F~~A~~~i~~~~ 212 (465)
....|||+|++|||||++|++|.... +.+|+.+++..+.. ...|... ..-...|.. ..
T Consensus 398 ~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~~~~~lfg~~~~~~~g~~~~~~g~le~-------a~ 470 (686)
T PRK15429 398 SDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFEL-------AD 470 (686)
T ss_pred CCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhHhhhhhcCcccccccccccchhhHHHh-------cC
Confidence 34579999999999999999998864 46899988876532 1222100 000122332 34
Q ss_pred ceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC
Q 012383 213 MCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF 278 (465)
Q Consensus 213 p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~ 278 (465)
...|||||||.+.. .++.-|+.++++.....+.+. .....++-+|+|||..
T Consensus 471 ~GtL~Ldei~~L~~-------------~~Q~~L~~~l~~~~~~~~g~~--~~~~~~~RiI~~t~~~ 521 (686)
T PRK15429 471 KSSLFLDEVGDMPL-------------ELQPKLLRVLQEQEFERLGSN--KIIQTDVRLIAATNRD 521 (686)
T ss_pred CCeEEEechhhCCH-------------HHHHHHHHHHHhCCEEeCCCC--CcccceEEEEEeCCCC
Confidence 57999999987642 233445555552211111111 1123567899999764
No 225
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.95 E-value=0.00059 Score=68.50 Aligned_cols=155 Identities=17% Similarity=0.300 Sum_probs=94.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh-C--CceEEec------cc-------cccc--------CCCCChHHH-HHHHHHHHH
Q 012383 151 ILGIWGGKGQGKSFQCELVFAKM-G--INPIMMS------AG-------ELES--------GNAGEPAKL-IRQRYREAA 205 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~el-g--~~~i~vs------~s-------~L~s--------~~~Ge~~k~-Ir~~F~~A~ 205 (465)
.+|+|||+|+||-+.+-++-+++ | ++-+.+. ++ .+.+ ..+|...+. |.++.++.+
T Consensus 36 Hll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevA 115 (351)
T KOG2035|consen 36 HLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVA 115 (351)
T ss_pred eEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHH
Confidence 79999999999999999999995 3 2211111 10 1111 134544443 455555543
Q ss_pred HHHH-----hCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCC
Q 012383 206 DIIK-----KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFST 280 (465)
Q Consensus 206 ~~i~-----~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~ 280 (465)
+.-. +..-.|++|.|.|.+...- | ..+..|. . .....+-+|..+|..+.
T Consensus 116 Qt~qie~~~qr~fKvvvi~ead~LT~dA----Q-----~aLRRTM----E-------------kYs~~~RlIl~cns~Sr 169 (351)
T KOG2035|consen 116 QTQQIETQGQRPFKVVVINEADELTRDA----Q-----HALRRTM----E-------------KYSSNCRLILVCNSTSR 169 (351)
T ss_pred hhcchhhccccceEEEEEechHhhhHHH----H-----HHHHHHH----H-------------HHhcCceEEEEecCccc
Confidence 2111 3344699999999875432 1 2222222 1 33466789999999999
Q ss_pred CChhhhcCCCceEEEeCCCHHHHHHHHHHhccCCCCCh-hHHHHHhcCCCchh
Q 012383 281 LYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVAD-DDIVKLVDTFPGQS 332 (465)
Q Consensus 281 LD~ALlR~GRfd~~i~~P~~e~R~~Il~~~l~~~~v~~-~~la~lt~gfsgad 332 (465)
+-+|+..+. +-..+..|+.++-..++...++++++.. ++++.....=|+.+
T Consensus 170 iIepIrSRC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~~n 221 (351)
T KOG2035|consen 170 IIEPIRSRC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSNRN 221 (351)
T ss_pred chhHHhhhe-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhccc
Confidence 999997632 2223449999999999999998876553 34443333334433
No 226
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=4.6e-05 Score=86.77 Aligned_cols=112 Identities=16% Similarity=0.148 Sum_probs=73.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEeccccc------c---cCCCCChHHHHHHHHHHHHHHHHhCCce
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGEL------E---SGNAGEPAKLIRQRYREAADIIKKGKMC 214 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~s~L------~---s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ 214 (465)
+++--+||.||.|+|||-||+++|..+ .-.++.++.+++ + .+|+|..+-- .+. +.+++...+
T Consensus 589 ~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskligsp~gyvG~e~gg--~Lt----eavrrrP~s 662 (898)
T KOG1051|consen 589 NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIGSPPGYVGKEEGG--QLT----EAVKRRPYS 662 (898)
T ss_pred CCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccCCCcccccchhHH--HHH----HHHhcCCce
Confidence 467788999999999999999999996 236777877752 2 2366654321 222 234777889
Q ss_pred EEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC
Q 012383 215 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS 279 (465)
Q Consensus 215 ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~ 279 (465)
||+|||||+- + ..+...|++++|.-.. .|+.-......+++||+|+|.-.
T Consensus 663 VVLfdeIEkA--------h-----~~v~n~llq~lD~Grl--tDs~Gr~Vd~kN~I~IMTsn~~~ 712 (898)
T KOG1051|consen 663 VVLFEEIEKA--------H-----PDVLNILLQLLDRGRL--TDSHGREVDFKNAIFIMTSNVGS 712 (898)
T ss_pred EEEEechhhc--------C-----HHHHHHHHHHHhcCcc--ccCCCcEeeccceEEEEecccch
Confidence 9999999852 2 3344456667772111 11111123457889999998744
No 227
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.94 E-value=0.00019 Score=70.88 Aligned_cols=26 Identities=23% Similarity=0.210 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~e 172 (465)
...+.|.|||++|+|||+||+.+++.
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~ 42 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARD 42 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCH
T ss_pred CCeEEEEEEcCCcCCcceeeeecccc
Confidence 56789999999999999999999988
No 228
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.93 E-value=9.2e-05 Score=79.78 Aligned_cols=46 Identities=26% Similarity=0.360 Sum_probs=36.8
Q ss_pred HHHhhhh-----CCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecc
Q 012383 136 ITKNFMS-----LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 182 (465)
Q Consensus 136 i~k~~l~-----~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~ 182 (465)
.++.+|+ .++.+ .+.+||+||+|||||+.++.+++++|+.++..+.
T Consensus 93 eVk~WL~~~~~~~~~l~-~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~N 143 (634)
T KOG1970|consen 93 EVKQWLKQVAEFTPKLG-SRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSN 143 (634)
T ss_pred HHHHHHHHHHHhccCCC-ceEEEEeCCCCCCchhHHHHHHHhhCceeeeecC
Confidence 3556665 34432 4689999999999999999999999999888663
No 229
>PHA02774 E1; Provisional
Probab=97.93 E-value=5.2e-05 Score=82.79 Aligned_cols=117 Identities=17% Similarity=0.143 Sum_probs=67.6
Q ss_pred HHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEE-ecccccccCCCCChHHHHHHHHHHHHHHHHhCC
Q 012383 134 VHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM-MSAGELESGNAGEPAKLIRQRYREAADIIKKGK 212 (465)
Q Consensus 134 ~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~-vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~ 212 (465)
+...|++++ +++.-..++||||||||||++|-+|++.++-.++. ++.. +.+- +..+ ..
T Consensus 421 l~~lk~~l~--~~PKknciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~---s~Fw----------Lqpl------~d 479 (613)
T PHA02774 421 LTALKDFLK--GIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSK---SHFW----------LQPL------AD 479 (613)
T ss_pred HHHHHHHHh--cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECc---cccc----------cchh------cc
Confidence 344555553 44333589999999999999999999998644433 4421 1110 1111 12
Q ss_pred ceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccc-cCCCCCceEEEEeCCCCCCChh
Q 012383 213 MCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYN-KEENPRVPIIVTGNDFSTLYAP 284 (465)
Q Consensus 213 p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~-~~~~~~V~VI~TTN~~~~LD~A 284 (465)
-.|++|||+-. . ....+...|.++||.- .+.++--.. ......-|+|+|||---.-++.
T Consensus 480 ~ki~vlDD~t~---------~---~w~y~d~~Lrn~LdG~-~v~lD~Khk~~~q~k~pPlIITSN~d~~~~~~ 539 (613)
T PHA02774 480 AKIALLDDATH---------P---CWDYIDTYLRNALDGN-PVSIDCKHKAPVQIKCPPLLITSNIDVKAEDR 539 (613)
T ss_pred CCEEEEecCcc---------h---HHHHHHHHHHHHcCCC-cceeeecccCcccccCCCEEEecCCCcccchh
Confidence 25999999810 0 1234455678888843 333332211 1233456999999954444444
No 230
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.92 E-value=1.2e-05 Score=84.59 Aligned_cols=131 Identities=13% Similarity=0.175 Sum_probs=79.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh----CCceEEecccccccCCCCChHHHHHHHHHHHH-----------HHHHhCCce
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKM----GINPIMMSAGELESGNAGEPAKLIRQRYREAA-----------DIIKKGKMC 214 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~el----g~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~-----------~~i~~~~p~ 214 (465)
+.||++|++||||+++|++|.... +.+||.++++.+-..-.. ..+|.... .++....-.
T Consensus 102 ~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~------~eLFG~~kGaftGa~~~k~Glfe~A~GG 175 (403)
T COG1221 102 LPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQE------AELFGHEKGAFTGAQGGKAGLFEQANGG 175 (403)
T ss_pred CcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHH------HHHhccccceeecccCCcCchheecCCC
Confidence 679999999999999999987553 558999999877533211 11333210 111222456
Q ss_pred EEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhhc-----CC
Q 012383 215 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIR-----DG 289 (465)
Q Consensus 215 ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR-----~G 289 (465)
.||+|||-.+- -.++.-|+.+++.-+...+.+ .......|.+|++||. .++.+++. +-
T Consensus 176 tLfLDEI~~LP-------------~~~Q~kLl~~le~g~~~rvG~--~~~~~~dVRli~AT~~--~l~~~~~~g~dl~~r 238 (403)
T COG1221 176 TLFLDEIHRLP-------------PEGQEKLLRVLEEGEYRRVGG--SQPRPVDVRLICATTE--DLEEAVLAGADLTRR 238 (403)
T ss_pred EEehhhhhhCC-------------HhHHHHHHHHHHcCceEecCC--CCCcCCCceeeecccc--CHHHHHHhhcchhhh
Confidence 99999995432 234456777777444333333 1233468899999975 34444443 01
Q ss_pred CceEEEeCCCHHHH
Q 012383 290 RMEKFYWAPTREDR 303 (465)
Q Consensus 290 Rfd~~i~~P~~e~R 303 (465)
|....|.+|...+|
T Consensus 239 l~~~~I~LPpLrER 252 (403)
T COG1221 239 LNILTITLPPLRER 252 (403)
T ss_pred hcCceecCCChhhc
Confidence 34444557777666
No 231
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=97.92 E-value=9.7e-05 Score=77.57 Aligned_cols=88 Identities=17% Similarity=0.209 Sum_probs=57.2
Q ss_pred hCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcC-CccccCCCccccCCCCCceEEEEeCCCC-CCChhhhc
Q 012383 210 KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADN-PTCVQLPGMYNKEENPRVPIIVTGNDFS-TLYAPLIR 287 (465)
Q Consensus 210 ~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~-~~~v~l~g~~~~~~~~~V~VI~TTN~~~-~LD~ALlR 287 (465)
+....||+|||+-.+. .+++. .|++.+.. -+.|+.+|.. .....++++|+|+|-.+ .|-|.|+-
T Consensus 142 ~AnRGIlYvDEvnlL~------------d~lvd-~LLd~aaeG~n~vereGis-i~hpa~fvligTmNPEeGeLrpqLlD 207 (423)
T COG1239 142 RANRGILYVDEVNLLD------------DHLVD-ALLDVAAEGVNDVEREGIS-IRHPARFLLIGTMNPEEGELRPQLLD 207 (423)
T ss_pred hccCCEEEEecccccc------------HHHHH-HHHHHHHhCCceeeeCcee-eccCccEEEEeecCccccccchhhHh
Confidence 4445699999995432 12333 34444442 2455656652 13346789999999764 68888884
Q ss_pred CCCceEEEe---CCCHHHHHHHHHHhccC
Q 012383 288 DGRMEKFYW---APTREDRIGVCKGIFRN 313 (465)
Q Consensus 288 ~GRfd~~i~---~P~~e~R~~Il~~~l~~ 313 (465)
||...+. ..+.++|.+|++.-..-
T Consensus 208 --Rfg~~v~~~~~~~~~~rv~Ii~r~~~f 234 (423)
T COG1239 208 --RFGLEVDTHYPLDLEERVEIIRRRLAF 234 (423)
T ss_pred --hhcceeeccCCCCHHHHHHHHHHHHHh
Confidence 7776666 77889999998766544
No 232
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=97.91 E-value=2.5e-05 Score=85.29 Aligned_cols=109 Identities=11% Similarity=0.173 Sum_probs=64.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHH-----------hCCceEEecccccccCCCCChHHHHHHHHHHHH------------
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAK-----------MGINPIMMSAGELESGNAGEPAKLIRQRYREAA------------ 205 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~e-----------lg~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~------------ 205 (465)
+..|||+|++||||+++|++|-+. .+.+|+.++++.+-... +-..+|....
T Consensus 242 ~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~l------leseLFG~~~gaftga~~~~~~ 315 (538)
T PRK15424 242 SAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESL------LEAELFGYEEGAFTGSRRGGRA 315 (538)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCChhh------HHHHhcCCccccccCccccccC
Confidence 467999999999999999999877 35689999988763211 1112232110
Q ss_pred HHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC
Q 012383 206 DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF 278 (465)
Q Consensus 206 ~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~ 278 (465)
..+.......||||||+.+.. .++.-|+.++.+.+...+.+. .....++-||++||..
T Consensus 316 Gl~e~A~gGTLfLdeI~~Lp~-------------~~Q~kLl~~L~e~~~~r~G~~--~~~~~dvRiIaat~~~ 373 (538)
T PRK15424 316 GLFEIAHGGTLFLDEIGEMPL-------------PLQTRLLRVLEEKEVTRVGGH--QPVPVDVRVISATHCD 373 (538)
T ss_pred CchhccCCCEEEEcChHhCCH-------------HHHHHHHhhhhcCeEEecCCC--ceeccceEEEEecCCC
Confidence 011122456899999987542 234445556653221111111 0112456799999764
No 233
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.91 E-value=2.8e-05 Score=69.51 Aligned_cols=59 Identities=20% Similarity=0.226 Sum_probs=41.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHhCC---ceEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEeccccccc
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKMGI---NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGA 225 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~elg~---~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~ 225 (465)
..-|||+|+|||||+++|++|....+. +|+.+++..+- .+.+. ......|||+|||.+.
T Consensus 21 ~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----------~~~l~-------~a~~gtL~l~~i~~L~ 82 (138)
T PF14532_consen 21 SSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----------AELLE-------QAKGGTLYLKNIDRLS 82 (138)
T ss_dssp SS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----------HHHHH-------HCTTSEEEEECGCCS-
T ss_pred CCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----------HHHHH-------HcCCCEEEECChHHCC
Confidence 456899999999999999999988654 45555554322 22333 3377899999998764
No 234
>PRK09862 putative ATP-dependent protease; Provisional
Probab=97.91 E-value=3.5e-05 Score=83.56 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHh
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~el 173 (465)
...++|.||||||||++++.++..+
T Consensus 210 G~~llliG~~GsGKTtLak~L~gll 234 (506)
T PRK09862 210 GHNLLLIGPPGTGKTMLASRINGLL 234 (506)
T ss_pred CcEEEEECCCCCcHHHHHHHHhccC
Confidence 4689999999999999999998764
No 235
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.91 E-value=0.00034 Score=83.05 Aligned_cols=32 Identities=25% Similarity=0.587 Sum_probs=26.8
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCc
Q 012383 145 NIKVPLILGIWGGKGQGKSFQCELVFAKMGIN 176 (465)
Q Consensus 145 ~~~~p~glLL~GPPGtGKT~LAraIA~elg~~ 176 (465)
+....+.+.||||+|+|||+||+++++.+..+
T Consensus 203 ~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~ 234 (1153)
T PLN03210 203 ESEEVRMVGIWGSSGIGKTTIARALFSRLSRQ 234 (1153)
T ss_pred ccCceEEEEEEcCCCCchHHHHHHHHHHHhhc
Confidence 34456889999999999999999999986543
No 236
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.90 E-value=7.8e-05 Score=73.15 Aligned_cols=139 Identities=16% Similarity=0.086 Sum_probs=79.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCC
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRM 228 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r 228 (465)
..|-.++||+|||||..++.+|+.+|..++..++++-. ....+.++|.=+ ...-+-+.|||++.+-..
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~------~~~~l~ril~G~-----~~~GaW~cfdefnrl~~~- 99 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQM------DYQSLSRILKGL-----AQSGAWLCFDEFNRLSEE- 99 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHH-----HHHT-EEEEETCCCSSHH-
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccc------cHHHHHHHHHHH-----hhcCchhhhhhhhhhhHH-
Confidence 46778999999999999999999999999999988755 345566666544 123579999999876322
Q ss_pred CCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeC----CCCCCChhhhcCCCceEEEe--CCCHHH
Q 012383 229 GGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGN----DFSTLYAPLIRDGRMEKFYW--APTRED 302 (465)
Q Consensus 229 ~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN----~~~~LD~ALlR~GRfd~~i~--~P~~e~ 302 (465)
.-.+..+.+......+..+...+.+.+... .-.+..-+.+|.| ....||+.|+.-.| -+. .||...
T Consensus 100 ----vLS~i~~~i~~i~~al~~~~~~~~~~g~~i-~l~~~~~iFiT~np~y~gr~~LP~nLk~lFR---pvam~~PD~~~ 171 (231)
T PF12774_consen 100 ----VLSVISQQIQSIQDALRAKQKSFTLEGQEI-KLNPNCGIFITMNPGYAGRSELPENLKALFR---PVAMMVPDLSL 171 (231)
T ss_dssp ----HHHHHHHHHHHHHHHHHCTSSEEEETTCEE-E--TT-EEEEEE-B-CCCC--S-HHHCTTEE---EEE--S--HHH
T ss_pred ----HHHHHHHHHHHHHHhhcccccccccCCCEE-EEccceeEEEeeccccCCcccCCHhHHHHhh---eeEEeCCCHHH
Confidence 122333334433333344444444443311 1124455667777 34679998875333 344 888776
Q ss_pred HHHHH
Q 012383 303 RIGVC 307 (465)
Q Consensus 303 R~~Il 307 (465)
-.++.
T Consensus 172 I~ei~ 176 (231)
T PF12774_consen 172 IAEIL 176 (231)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55553
No 237
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.90 E-value=0.00013 Score=67.52 Aligned_cols=31 Identities=19% Similarity=0.209 Sum_probs=24.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHH---hCCceEEecc
Q 012383 152 LGIWGGKGQGKSFQCELVFAK---MGINPIMMSA 182 (465)
Q Consensus 152 lLL~GPPGtGKT~LAraIA~e---lg~~~i~vs~ 182 (465)
+|++||||||||+++..++.+ .|..+++++.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~ 35 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTL 35 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 789999999999999988775 3666666654
No 238
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=97.90 E-value=4.6e-05 Score=77.47 Aligned_cols=134 Identities=13% Similarity=0.172 Sum_probs=80.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCc-e-----EEecccccccCCCCC-hHHHHHHHHHHHH--HHHH-hCCceEEEecc
Q 012383 151 ILGIWGGKGQGKSFQCELVFAKMGIN-P-----IMMSAGELESGNAGE-PAKLIRQRYREAA--DIIK-KGKMCCLMIND 220 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~elg~~-~-----i~vs~s~L~s~~~Ge-~~k~Ir~~F~~A~--~~i~-~~~p~ILfIDE 220 (465)
.+|+|||||||||+...+.|..+-.+ - ..++++. --|- ..+.-...|..+. .+.. ...+.++++||
T Consensus 64 h~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd----~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDE 139 (360)
T KOG0990|consen 64 HLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASD----DRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDE 139 (360)
T ss_pred cccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccC----ccCCcchHHHHHHHHhhccceeccccCceeEEEecc
Confidence 89999999999999999999997553 1 1122221 1111 1222223454441 0011 23788999999
Q ss_pred cccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhhcCCCceEEEe-CCC
Q 012383 221 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APT 299 (465)
Q Consensus 221 IDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~-~P~ 299 (465)
.|+....- | ..|-..+. ....++-++..+|.+..+.||++. ||.++-. .-+
T Consensus 140 ADaMT~~A----Q---------nALRRvie-------------k~t~n~rF~ii~n~~~ki~pa~qs--Rctrfrf~pl~ 191 (360)
T KOG0990|consen 140 ADAMTRDA----Q---------NALRRVIE-------------KYTANTRFATISNPPQKIHPAQQS--RCTRFRFAPLT 191 (360)
T ss_pred hhHhhHHH----H---------HHHHHHHH-------------HhccceEEEEeccChhhcCchhhc--ccccCCCCCCC
Confidence 99865431 1 11111111 234556677889999999999875 7777666 445
Q ss_pred HHHHHHHHHHhccCCCC
Q 012383 300 REDRIGVCKGIFRNDNV 316 (465)
Q Consensus 300 ~e~R~~Il~~~l~~~~v 316 (465)
...-..++..+...+..
T Consensus 192 ~~~~~~r~shi~e~e~~ 208 (360)
T KOG0990|consen 192 MAQQTERQSHIRESEQK 208 (360)
T ss_pred hhhhhhHHHHHHhcchh
Confidence 55556666666655543
No 239
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.89 E-value=3.7e-05 Score=77.58 Aligned_cols=94 Identities=18% Similarity=0.335 Sum_probs=60.8
Q ss_pred HHHHHHHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHh---CC--ceEEeccccc---ccCCCCChHHHHHHH
Q 012383 129 MDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM---GI--NPIMMSAGEL---ESGNAGEPAKLIRQR 200 (465)
Q Consensus 129 ~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~el---g~--~~i~vs~s~L---~s~~~Ge~~k~Ir~~ 200 (465)
+.+.+++..|.|+..+.-+.|.-+=|||++||||.+.++.||+.+ |. +++..=.+.+ ..+++.... .++
T Consensus 90 a~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~ie~Yk---~eL 166 (344)
T KOG2170|consen 90 AKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHASKIEDYK---EEL 166 (344)
T ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChHHHHHHH---HHH
Confidence 345677788899999999999999999999999999999999985 21 2222111111 000111111 111
Q ss_pred HHHHHHHHHhCCceEEEeccccccc
Q 012383 201 YREAADIIKKGKMCCLMINDLDAGA 225 (465)
Q Consensus 201 F~~A~~~i~~~~p~ILfIDEIDai~ 225 (465)
-.+..+.....+.+|.+|||+|++-
T Consensus 167 ~~~v~~~v~~C~rslFIFDE~DKmp 191 (344)
T KOG2170|consen 167 KNRVRGTVQACQRSLFIFDEVDKLP 191 (344)
T ss_pred HHHHHHHHHhcCCceEEechhhhcC
Confidence 2222334468888999999999863
No 240
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.87 E-value=0.00016 Score=67.29 Aligned_cols=27 Identities=26% Similarity=0.290 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHh
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~el 173 (465)
+.+.-++++|+||+|||+++.-|+..+
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHH
Confidence 456789999999999999999999886
No 241
>PHA02624 large T antigen; Provisional
Probab=97.84 E-value=0.00018 Score=78.91 Aligned_cols=142 Identities=13% Similarity=0.070 Sum_probs=77.6
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEeccccc
Q 012383 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA 223 (465)
Q Consensus 144 ~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDa 223 (465)
.|++.-+.+|||||||||||+++.+|++.+|-..+.++.+.-. .-|... -...--+.+|||+-.
T Consensus 426 ~giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~k------------s~FwL~----pl~D~~~~l~dD~t~ 489 (647)
T PHA02624 426 ENVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDK------------LNFELG----CAIDQFMVVFEDVKG 489 (647)
T ss_pred hcCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcch------------hHHHhh----hhhhceEEEeeeccc
Confidence 3565567999999999999999999999995556667644211 113322 222335889999853
Q ss_pred ccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCcccc-CCCCCceEEEEeCCCCCCChhhhcCCCceEEEe-CCCHH
Q 012383 224 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNK-EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTRE 301 (465)
Q Consensus 224 i~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~-~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~-~P~~e 301 (465)
-+-....-......+-+ .-|-+.||.---|.++--... ....=-|.|+|||.. .||.-+.- ||-+.+. .|..-
T Consensus 490 ~~~~~~~Lp~G~~~dNl--~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ney-~iP~T~~~--Rf~~~~~F~~k~~ 564 (647)
T PHA02624 490 QPADNKDLPSGQGMNNL--DNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNEY-LIPQTVKA--RFAKVLDFKPKPY 564 (647)
T ss_pred cccccccCCcccccchh--hHHHhhcCCCCccccchhccCchhccCCCeEEeecCc-ccchhHHH--HHHHhccccccHH
Confidence 33211100000011101 124455553222222211100 111123899999975 47776654 7877777 66665
Q ss_pred HHHHH
Q 012383 302 DRIGV 306 (465)
Q Consensus 302 ~R~~I 306 (465)
-+..+
T Consensus 565 l~~sL 569 (647)
T PHA02624 565 LKKSL 569 (647)
T ss_pred HHHHH
Confidence 55443
No 242
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=97.84 E-value=7.9e-05 Score=81.31 Aligned_cols=109 Identities=13% Similarity=0.222 Sum_probs=63.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEecccccccCCCCChHHHHHHHHHH-------H-----HHHHHhCCc
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYRE-------A-----ADIIKKGKM 213 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~-------A-----~~~i~~~~p 213 (465)
+..|||+|++||||+++|++|.+.. +.+|+.++++.+-... +-..+|.. | ..++.....
T Consensus 235 ~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~l------leseLFG~~~gaftga~~~~~~Gl~e~A~g 308 (526)
T TIGR02329 235 DATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESL------LEAELFGYEEGAFTGARRGGRTGLIEAAHR 308 (526)
T ss_pred CCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhH------HHHHhcCCcccccccccccccccchhhcCC
Confidence 4679999999999999999998764 4589999988663211 11122221 0 001112245
Q ss_pred eEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC
Q 012383 214 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF 278 (465)
Q Consensus 214 ~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~ 278 (465)
..|||||||.+.. .++.-|+.++.+.....+.+. .....++-||+|||..
T Consensus 309 GTLfLdeI~~Lp~-------------~~Q~~Ll~~L~~~~~~r~g~~--~~~~~dvRiIaat~~~ 358 (526)
T TIGR02329 309 GTLFLDEIGEMPL-------------PLQTRLLRVLEEREVVRVGGT--EPVPVDVRVVAATHCA 358 (526)
T ss_pred ceEEecChHhCCH-------------HHHHHHHHHHhcCcEEecCCC--ceeeecceEEeccCCC
Confidence 6899999987643 233445555553221111111 0112356789998765
No 243
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=97.82 E-value=3e-05 Score=83.54 Aligned_cols=148 Identities=20% Similarity=0.254 Sum_probs=87.7
Q ss_pred ccccccccccCCCCCchhHHHHHHHHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEecccccc
Q 012383 110 LRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELE 186 (465)
Q Consensus 110 ~r~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~s~L~ 186 (465)
...|+|+++++. +|.+. .+...+|.+ .+.+-.|||.|++||||.++|++|-+.. +-+|+.++|+-+=
T Consensus 239 ~a~y~f~~Iig~---S~~m~--~~~~~akr~-----A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiP 308 (560)
T COG3829 239 KAKYTFDDIIGE---SPAML--RVLELAKRI-----AKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIP 308 (560)
T ss_pred ccccchhhhccC---CHHHH--HHHHHHHhh-----cCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCC
Confidence 345788888876 44443 244455554 3456789999999999999999998875 4589999988552
Q ss_pred -----cCCCCChHHH--------HHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCc
Q 012383 187 -----SGNAGEPAKL--------IRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT 253 (465)
Q Consensus 187 -----s~~~Ge~~k~--------Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~ 253 (465)
|...|-.... =..+|+.| ...-||+|||-.+ ...++.=|+.+|...+
T Consensus 309 e~LlESELFGye~GAFTGA~~~GK~GlfE~A-------~gGTLFLDEIgem-------------pl~LQaKLLRVLQEke 368 (560)
T COG3829 309 ETLLESELFGYEKGAFTGASKGGKPGLFELA-------NGGTLFLDEIGEM-------------PLPLQAKLLRVLQEKE 368 (560)
T ss_pred HHHHHHHHhCcCCccccccccCCCCcceeec-------cCCeEEehhhccC-------------CHHHHHHHHHHHhhce
Confidence 2222210000 00222222 2346999999433 2345555666666433
Q ss_pred cccCCCccccCCCCCceEEEEeCCCCCCChhhhcCCCce
Q 012383 254 CVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 292 (465)
Q Consensus 254 ~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd 292 (465)
-..+.+. ....-+|-||+|||+. | ..++..|||-
T Consensus 369 i~rvG~t--~~~~vDVRIIAATN~n--L-~~~i~~G~FR 402 (560)
T COG3829 369 IERVGGT--KPIPVDVRIIAATNRN--L-EKMIAEGTFR 402 (560)
T ss_pred EEecCCC--CceeeEEEEEeccCcC--H-HHHHhcCcch
Confidence 3333332 1123578899999984 2 2244556554
No 244
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.80 E-value=2.1e-05 Score=67.81 Aligned_cols=31 Identities=29% Similarity=0.370 Sum_probs=27.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCceEEecc
Q 012383 152 LGIWGGKGQGKSFQCELVFAKMGINPIMMSA 182 (465)
Q Consensus 152 lLL~GPPGtGKT~LAraIA~elg~~~i~vs~ 182 (465)
|+|.||||+|||++|+.+|+.+|+.++.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 7899999999999999999999988776654
No 245
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.76 E-value=9.7e-06 Score=75.68 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 012383 152 LGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 152 lLL~GPPGtGKT~LAraIA~el 173 (465)
++|+|+||+|||++++.+.+++
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 7899999999999999999997
No 246
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.76 E-value=7.7e-05 Score=71.82 Aligned_cols=40 Identities=23% Similarity=0.341 Sum_probs=33.2
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEeccc
Q 012383 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG 183 (465)
Q Consensus 144 ~~~~~p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~s 183 (465)
.|++....++|+||||+|||++|..+|.+. +...++++..
T Consensus 18 GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 18 GGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 477777889999999999999999998753 6677777765
No 247
>PRK15115 response regulator GlrR; Provisional
Probab=97.76 E-value=6.9e-05 Score=79.20 Aligned_cols=132 Identities=15% Similarity=0.198 Sum_probs=77.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEecccccccCCCCChHHHHHHHHHHHH-----------HHHHhCCce
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAA-----------DIIKKGKMC 214 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~-----------~~i~~~~p~ 214 (465)
...++|+|++|||||++|+++.... +.+|+.+++..+-... .-..+|..+. ..+......
T Consensus 157 ~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~------~~~~lfg~~~~~~~~~~~~~~g~~~~a~~g 230 (444)
T PRK15115 157 DVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQL------LESELFGHARGAFTGAVSNREGLFQAAEGG 230 (444)
T ss_pred CCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHH------HHHHhcCCCcCCCCCCccCCCCcEEECCCC
Confidence 3468999999999999999998874 4689999988663211 1122332210 011233456
Q ss_pred EEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhhcCCCc---
Q 012383 215 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM--- 291 (465)
Q Consensus 215 ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRf--- 291 (465)
.|||||||.+... ++..|+..+++.....+.+. .....++-+|+||+.. ++. ++..|+|
T Consensus 231 tl~l~~i~~l~~~-------------~q~~L~~~l~~~~~~~~g~~--~~~~~~~rii~~~~~~--l~~-~~~~~~f~~~ 292 (444)
T PRK15115 231 TLFLDEIGDMPAP-------------LQVKLLRVLQERKVRPLGSN--RDIDIDVRIISATHRD--LPK-AMARGEFRED 292 (444)
T ss_pred EEEEEccccCCHH-------------HHHHHHHHHhhCCEEeCCCC--ceeeeeEEEEEeCCCC--HHH-HHHcCCccHH
Confidence 8999999876432 33445555553221111111 0112467899999863 444 3444666
Q ss_pred ------eEEEeCCCHHHHH
Q 012383 292 ------EKFYWAPTREDRI 304 (465)
Q Consensus 292 ------d~~i~~P~~e~R~ 304 (465)
...+.+|...+|.
T Consensus 293 l~~~l~~~~i~lPpLr~R~ 311 (444)
T PRK15115 293 LYYRLNVVSLKIPALAERT 311 (444)
T ss_pred HHHhhceeeecCCChHhcc
Confidence 3334467777773
No 248
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.75 E-value=3.4e-05 Score=70.23 Aligned_cols=35 Identities=23% Similarity=0.159 Sum_probs=30.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEec
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 181 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs 181 (465)
.++..|+|+|+||||||++|+.+|+.+|+.++..+
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 45779999999999999999999999999888543
No 249
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.73 E-value=0.00024 Score=72.04 Aligned_cols=123 Identities=11% Similarity=0.015 Sum_probs=78.1
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceE--------EecccccccCC-CC----ChHHHHHHHHHHHHHHHHhCC
Q 012383 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPI--------MMSAGELESGN-AG----EPAKLIRQRYREAADIIKKGK 212 (465)
Q Consensus 146 ~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i--------~vs~s~L~s~~-~G----e~~k~Ir~~F~~A~~~i~~~~ 212 (465)
-+.|..+||+||+|+||+.+|.++|..+-+.-- .-..+++.--. .| -+...+|++-+.+...-..+.
T Consensus 16 ~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~ 95 (290)
T PRK05917 16 QKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESP 95 (290)
T ss_pred CCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCC
Confidence 367889999999999999999999999754210 00111110000 11 124455665554411111455
Q ss_pred ceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhhcCCCce
Q 012383 213 MCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 292 (465)
Q Consensus 213 p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd 292 (465)
..|++||++|.+-.. -...|+..++ ++..++.+|..|+.++.|.|.++. |+-
T Consensus 96 ~kv~ii~~ad~mt~~-------------AaNaLLK~LE-------------EPp~~~~fiL~~~~~~~ll~TI~S--Rcq 147 (290)
T PRK05917 96 YKIYIIHEADRMTLD-------------AISAFLKVLE-------------DPPQHGVIILTSAKPQRLPPTIRS--RSL 147 (290)
T ss_pred ceEEEEechhhcCHH-------------HHHHHHHHhh-------------cCCCCeEEEEEeCChhhCcHHHHh--cce
Confidence 679999999875322 2345556666 566788999999999999999876 665
Q ss_pred EEEe
Q 012383 293 KFYW 296 (465)
Q Consensus 293 ~~i~ 296 (465)
.+..
T Consensus 148 ~~~~ 151 (290)
T PRK05917 148 SIHI 151 (290)
T ss_pred EEEc
Confidence 5444
No 250
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.73 E-value=5.3e-05 Score=66.97 Aligned_cols=33 Identities=24% Similarity=0.472 Sum_probs=26.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCceEEecccccc
Q 012383 152 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 186 (465)
Q Consensus 152 lLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~ 186 (465)
|++.||||+|||++|+.++..++ ...++...+.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~~~ 34 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG--AVVISQDEIR 34 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST--EEEEEHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEeHHHHH
Confidence 78999999999999999999999 4445544443
No 251
>PRK08118 topology modulation protein; Reviewed
Probab=97.72 E-value=8.6e-05 Score=69.01 Aligned_cols=43 Identities=23% Similarity=0.200 Sum_probs=33.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCCh
Q 012383 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEP 193 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge~ 193 (465)
-|++.||||+|||++|+.|++.++++++.++.--....|...+
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~w~~~~ 45 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPNWEGVP 45 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcCCC
Confidence 5899999999999999999999999988876432233344444
No 252
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.70 E-value=8.9e-05 Score=77.86 Aligned_cols=75 Identities=11% Similarity=0.140 Sum_probs=49.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCC-----c-eEEecccc---------------cccCCCCChHHHHH---HHHHHHHHH
Q 012383 152 LGIWGGKGQGKSFQCELVFAKMGI-----N-PIMMSAGE---------------LESGNAGEPAKLIR---QRYREAADI 207 (465)
Q Consensus 152 lLL~GPPGtGKT~LAraIA~elg~-----~-~i~vs~s~---------------L~s~~~Ge~~k~Ir---~~F~~A~~~ 207 (465)
.||+||||+|||+|++.|++.... . ++.+.... +.+.+...++..++ .....|...
T Consensus 172 ~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae~~ 251 (416)
T PRK09376 172 GLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAKRL 251 (416)
T ss_pred EEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 588999999999999999998643 2 22232221 33444445555555 334445344
Q ss_pred HHhCCceEEEecccccccC
Q 012383 208 IKKGKMCCLMINDLDAGAG 226 (465)
Q Consensus 208 i~~~~p~ILfIDEIDai~~ 226 (465)
...++..|||||||..++.
T Consensus 252 ~e~G~dVlL~iDsItR~ar 270 (416)
T PRK09376 252 VEHGKDVVILLDSITRLAR 270 (416)
T ss_pred HHcCCCEEEEEEChHHHHH
Confidence 4477899999999987743
No 253
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.68 E-value=0.00016 Score=77.38 Aligned_cols=80 Identities=20% Similarity=0.142 Sum_probs=53.6
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEecccccccCC------CCC--------hHHHHHHHHHHHHH
Q 012383 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGN------AGE--------PAKLIRQRYREAAD 206 (465)
Q Consensus 144 ~~~~~p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~s~L~s~~------~Ge--------~~k~Ir~~F~~A~~ 206 (465)
.|+.+...+||+||||+|||+|+..+|... +..+++++..+-.+.. .|. .+..+..++ +
T Consensus 75 GGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~----~ 150 (446)
T PRK11823 75 GGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAIL----A 150 (446)
T ss_pred CCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHH----H
Confidence 377777889999999999999999998865 6677887765432110 110 001122222 3
Q ss_pred HHHhCCceEEEecccccccCC
Q 012383 207 IIKKGKMCCLMINDLDAGAGR 227 (465)
Q Consensus 207 ~i~~~~p~ILfIDEIDai~~~ 227 (465)
.++...|.+|+||+|-.+...
T Consensus 151 ~i~~~~~~lVVIDSIq~l~~~ 171 (446)
T PRK11823 151 TIEEEKPDLVVIDSIQTMYSP 171 (446)
T ss_pred HHHhhCCCEEEEechhhhccc
Confidence 336678999999999887543
No 254
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.67 E-value=0.00032 Score=72.10 Aligned_cols=84 Identities=15% Similarity=0.205 Sum_probs=53.8
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEecccccccC----CCCCh--------HHHHHHHHHHHHHHH
Q 012383 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG----NAGEP--------AKLIRQRYREAADII 208 (465)
Q Consensus 144 ~~~~~p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~s~L~s~----~~Ge~--------~k~Ir~~F~~A~~~i 208 (465)
.|++.-..++|+||||||||+||-.++.+. |-..+.++..+-.+. ..|-. .....+.+..+..++
T Consensus 50 GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li 129 (321)
T TIGR02012 50 GGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLV 129 (321)
T ss_pred CCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHh
Confidence 477777899999999999999988766653 556666654432110 01100 001122333444455
Q ss_pred HhCCceEEEecccccccCC
Q 012383 209 KKGKMCCLMINDLDAGAGR 227 (465)
Q Consensus 209 ~~~~p~ILfIDEIDai~~~ 227 (465)
+...+.+|+||-+-++.++
T Consensus 130 ~~~~~~lIVIDSv~al~~~ 148 (321)
T TIGR02012 130 RSGAVDIIVVDSVAALVPK 148 (321)
T ss_pred hccCCcEEEEcchhhhccc
Confidence 6788999999999988764
No 255
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=97.67 E-value=4.3e-05 Score=78.69 Aligned_cols=136 Identities=18% Similarity=0.208 Sum_probs=71.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccc-----c---------ccCCCCChHHHHHHHHHHHHHHHHhCCce
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE-----L---------ESGNAGEPAKLIRQRYREAADIIKKGKMC 214 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~-----L---------~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ 214 (465)
...|||.|.||||||.|.+.+++-....+ ++++.. | ..+|.-+.+.+ -.....
T Consensus 57 ~ihiLlvGdpg~gKS~ll~~~~~~~pr~v-~~~g~~~s~~gLta~~~~d~~~~~~~leaGal------------vlad~G 123 (331)
T PF00493_consen 57 NIHILLVGDPGTGKSQLLKYVAKLAPRSV-YTSGKGSSAAGLTASVSRDPVTGEWVLEAGAL------------VLADGG 123 (331)
T ss_dssp S--EEEECSCHHCHHHHHHCCCCT-SSEE-EEECCGSTCCCCCEEECCCGGTSSECEEE-HH------------HHCTTS
T ss_pred ccceeeccchhhhHHHHHHHHHhhCCceE-EECCCCcccCCccceeccccccceeEEeCCch------------hcccCc
Confidence 45899999999999999998865543333 222211 2 11122122211 123457
Q ss_pred EEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCc-cccCCCccccCCCCCceEEEEeCCCC-------------C
Q 012383 215 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT-CVQLPGMYNKEENPRVPIIVTGNDFS-------------T 280 (465)
Q Consensus 215 ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~-~v~l~g~~~~~~~~~V~VI~TTN~~~-------------~ 280 (465)
|++|||+|++-... ...|.+.+++.+ .+.-.|. ...-..+.-|++++|-.. .
T Consensus 124 iccIDe~dk~~~~~-------------~~~l~eaMEqq~isi~kagi-~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~ 189 (331)
T PF00493_consen 124 ICCIDEFDKMKEDD-------------RDALHEAMEQQTISIAKAGI-VTTLNARCSVLAAANPKFGRYDPNKSLSENIN 189 (331)
T ss_dssp EEEECTTTT--CHH-------------HHHHHHHHHCSCEEECTSSS-EEEEE---EEEEEE--TT--S-TTS-CGCCT-
T ss_pred eeeecccccccchH-------------HHHHHHHHHcCeeccchhhh-cccccchhhhHHHHhhhhhhcchhhhhHHhcc
Confidence 99999999864321 234445555322 1111121 011235678999999765 5
Q ss_pred CChhhhcCCCceEEEe---CCCHHHHHHHHHHhccC
Q 012383 281 LYAPLIRDGRMEKFYW---APTREDRIGVCKGIFRN 313 (465)
Q Consensus 281 LD~ALlR~GRfd~~i~---~P~~e~R~~Il~~~l~~ 313 (465)
++++|+. |||.++. .|+.+.-..|.+.++..
T Consensus 190 l~~~LLS--RFDLif~l~D~~d~~~D~~la~~il~~ 223 (331)
T PF00493_consen 190 LPPPLLS--RFDLIFLLRDKPDEEEDERLAEHILDS 223 (331)
T ss_dssp S-CCCHC--C-SEEECC--TTT-HHHHHHHHHHHTT
T ss_pred cchhhHh--hcCEEEEeccccccccccccceEEEec
Confidence 8889986 9999987 77776666666555543
No 256
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.66 E-value=8.3e-05 Score=76.54 Aligned_cols=107 Identities=17% Similarity=0.255 Sum_probs=62.6
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHhCCce-EEecccccc-------cCCCCChHHHHHHHHHHHHHHHHhCCceEEE
Q 012383 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGINP-IMMSAGELE-------SGNAGEPAKLIRQRYREAADIIKKGKMCCLM 217 (465)
Q Consensus 146 ~~~p~glLL~GPPGtGKT~LAraIA~elg~~~-i~vs~s~L~-------s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILf 217 (465)
..+|+|+.||||-|+|||+|.-.....+-.+- ..+....++ ....|++. -+...|.++.+ .-.||.
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~d----pl~~iA~~~~~--~~~vLC 135 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQTD----PLPPIADELAA--ETRVLC 135 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCCC----ccHHHHHHHHh--cCCEEE
Confidence 56789999999999999999999998865432 111111111 11224330 11122222222 235999
Q ss_pred ecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC-CCCCh
Q 012383 218 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF-STLYA 283 (465)
Q Consensus 218 IDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~-~~LD~ 283 (465)
|||+.- ..+.+.|+-..|++-|= ..+|.+++|+|.+ +.|.+
T Consensus 136 fDEF~V----------tDI~DAMiL~rL~~~Lf---------------~~GV~lvaTSN~~P~~LY~ 177 (367)
T COG1485 136 FDEFEV----------TDIADAMILGRLLEALF---------------ARGVVLVATSNTAPDNLYK 177 (367)
T ss_pred eeeeee----------cChHHHHHHHHHHHHHH---------------HCCcEEEEeCCCChHHhcc
Confidence 999842 34455666555544432 2578999999973 33433
No 257
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.64 E-value=0.00016 Score=71.74 Aligned_cols=77 Identities=13% Similarity=0.162 Sum_probs=48.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHhCCc------eEEeccc------cc---------ccCCCCChHHHHH---HHHHHH
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKMGIN------PIMMSAG------EL---------ESGNAGEPAKLIR---QRYREA 204 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~elg~~------~i~vs~s------~L---------~s~~~Ge~~k~Ir---~~F~~A 204 (465)
..-++|.||+|||||+|++.+++.+... ++.+... ++ .+.+-..+...++ .....|
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~a 95 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEKA 95 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 4568999999999999999999987542 2232221 11 2222222333222 334444
Q ss_pred HHHHHhCCceEEEeccccccc
Q 012383 205 ADIIKKGKMCCLMINDLDAGA 225 (465)
Q Consensus 205 ~~~i~~~~p~ILfIDEIDai~ 225 (465)
......++..+|||||+..+.
T Consensus 96 ~~~~~~G~~vll~iDei~r~a 116 (249)
T cd01128 96 KRLVEHGKDVVILLDSITRLA 116 (249)
T ss_pred HHHHHCCCCEEEEEECHHHhh
Confidence 333346789999999998764
No 258
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.64 E-value=0.00023 Score=69.09 Aligned_cols=82 Identities=20% Similarity=0.218 Sum_probs=54.1
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHHHH---hCCceEEeccccccc--------------CCC--C-------------
Q 012383 144 PNIKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELES--------------GNA--G------------- 191 (465)
Q Consensus 144 ~~~~~p~glLL~GPPGtGKT~LAraIA~e---lg~~~i~vs~s~L~s--------------~~~--G------------- 191 (465)
.|++....++++|+||+|||+++..++.+ .|...++++..+-.. ++. |
T Consensus 20 gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~ 99 (234)
T PRK06067 20 GGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTEGFE 99 (234)
T ss_pred CCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEeccccccc
Confidence 47888899999999999999999998765 355666655432110 000 0
Q ss_pred ChHHHHHHHHHHHHHHHHhCCceEEEeccccccc
Q 012383 192 EPAKLIRQRYREAADIIKKGKMCCLMINDLDAGA 225 (465)
Q Consensus 192 e~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~ 225 (465)
........++....+.+....|.+|+||++-.+.
T Consensus 100 ~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~ 133 (234)
T PRK06067 100 WNSTLANKLLELIIEFIKSKREDVIIIDSLTIFA 133 (234)
T ss_pred cCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHH
Confidence 0011224455555566667789999999998653
No 259
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=97.63 E-value=0.00015 Score=77.18 Aligned_cols=132 Identities=13% Similarity=0.190 Sum_probs=75.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEecccccccCCCCChHHHHHHHHHHHH-----------HHHHhCCce
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAA-----------DIIKKGKMC 214 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~-----------~~i~~~~p~ 214 (465)
...+||+|++|||||++|+++.... +.+|+.++++.+-.. ..-..+|.... ..+......
T Consensus 161 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~------~~~~~lfg~~~g~~~~~~~~~~g~~~~a~~G 234 (469)
T PRK10923 161 SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKD------LIESELFGHEKGAFTGANTIRQGRFEQADGG 234 (469)
T ss_pred CCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHH------HHHHHhcCCCCCCCCCCCcCCCCCeeECCCC
Confidence 4569999999999999999998885 358999998766321 11122333110 001122356
Q ss_pred EEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC-------CCCChhhhc
Q 012383 215 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF-------STLYAPLIR 287 (465)
Q Consensus 215 ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~-------~~LD~ALlR 287 (465)
.|||||||.+... ++..|+.++++.......+. .....++-||+||+.. ..+.+.|..
T Consensus 235 tl~l~~i~~l~~~-------------~q~~L~~~l~~~~~~~~~~~--~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~ 299 (469)
T PRK10923 235 TLFLDEIGDMPLD-------------VQTRLLRVLADGQFYRVGGY--APVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 (469)
T ss_pred EEEEeccccCCHH-------------HHHHHHHHHhcCcEEeCCCC--CeEEeeEEEEEeCCCCHHHHHHcCCchHHHHH
Confidence 8999999876432 23445556653222111111 0112457899999763 234455553
Q ss_pred CCCce-EEEeCCCHHHH
Q 012383 288 DGRME-KFYWAPTREDR 303 (465)
Q Consensus 288 ~GRfd-~~i~~P~~e~R 303 (465)
|+. ..+.+|...+|
T Consensus 300 --~l~~~~i~~PpLreR 314 (469)
T PRK10923 300 --RLNVIRVHLPPLRER 314 (469)
T ss_pred --HhcceeecCCCcccc
Confidence 443 44445655555
No 260
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.62 E-value=0.0022 Score=65.38 Aligned_cols=128 Identities=9% Similarity=0.101 Sum_probs=80.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHhCCc-------------eEEecccccccCCCCC--hHHHHHHHHHHHHHHH-Hh
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKMGIN-------------PIMMSAGELESGNAGE--PAKLIRQRYREAADII-KK 210 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~elg~~-------------~i~vs~s~L~s~~~Ge--~~k~Ir~~F~~A~~~i-~~ 210 (465)
+.+...||+|+.|.||+.+++.+++.+-+. ++.+.. .|. +...|+.+-+...-.- ..
T Consensus 16 ~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~-------~g~~i~vd~Ir~l~~~~~~~~~~~ 88 (299)
T PRK07132 16 KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDI-------FDKDLSKSEFLSAINKLYFSSFVQ 88 (299)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEecc-------CCCcCCHHHHHHHHHHhccCCccc
Confidence 456899999999999999999999997321 111210 022 1234444444330000 01
Q ss_pred CCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhhcCCC
Q 012383 211 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 290 (465)
Q Consensus 211 ~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GR 290 (465)
+...|++||+.|.+. ......|+..++ ++.+.+.+|.+|+.++.|-+.++. |
T Consensus 89 ~~~KvvII~~~e~m~-------------~~a~NaLLK~LE-------------EPp~~t~~il~~~~~~kll~TI~S--R 140 (299)
T PRK07132 89 SQKKILIIKNIEKTS-------------NSLLNALLKTIE-------------EPPKDTYFLLTTKNINKVLPTIVS--R 140 (299)
T ss_pred CCceEEEEecccccC-------------HHHHHHHHHHhh-------------CCCCCeEEEEEeCChHhChHHHHh--C
Confidence 477899999986542 112234556666 445677888888899999999876 5
Q ss_pred ceEEEe-CCCHHHHHHHHHH
Q 012383 291 MEKFYW-APTREDRIGVCKG 309 (465)
Q Consensus 291 fd~~i~-~P~~e~R~~Il~~ 309 (465)
+..+-. .|+.++..+.+..
T Consensus 141 c~~~~f~~l~~~~l~~~l~~ 160 (299)
T PRK07132 141 CQVFNVKEPDQQKILAKLLS 160 (299)
T ss_pred eEEEECCCCCHHHHHHHHHH
Confidence 555444 6777777666554
No 261
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.61 E-value=0.00051 Score=70.70 Aligned_cols=84 Identities=15% Similarity=0.195 Sum_probs=53.9
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHHHH---hCCceEEecccccccC----CCCCh-H-------HHHHHHHHHHHHHH
Q 012383 144 PNIKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELESG----NAGEP-A-------KLIRQRYREAADII 208 (465)
Q Consensus 144 ~~~~~p~glLL~GPPGtGKT~LAraIA~e---lg~~~i~vs~s~L~s~----~~Ge~-~-------k~Ir~~F~~A~~~i 208 (465)
.|++.-+.+++|||||||||+||-.++.+ .|-..++++..+-.+. ..|-. . ....+.+..+..++
T Consensus 50 GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li 129 (325)
T cd00983 50 GGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLV 129 (325)
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHH
Confidence 47777788999999999999999987755 3566666665331110 01110 0 01122333344455
Q ss_pred HhCCceEEEecccccccCC
Q 012383 209 KKGKMCCLMINDLDAGAGR 227 (465)
Q Consensus 209 ~~~~p~ILfIDEIDai~~~ 227 (465)
+...+.+|+||-+-++.++
T Consensus 130 ~s~~~~lIVIDSvaal~~~ 148 (325)
T cd00983 130 RSGAVDLIVVDSVAALVPK 148 (325)
T ss_pred hccCCCEEEEcchHhhccc
Confidence 6788999999999988764
No 262
>PRK13947 shikimate kinase; Provisional
Probab=97.61 E-value=0.0002 Score=65.59 Aligned_cols=41 Identities=17% Similarity=0.086 Sum_probs=32.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCCh
Q 012383 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEP 193 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge~ 193 (465)
.|+|.|+||||||++++.+|+.+|++|+..+ .+.....|.+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d--~~~~~~~g~~ 43 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD--KEIEKMTGMT 43 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc--hhhhhhcCCc
Confidence 4899999999999999999999999987754 3444444544
No 263
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=97.61 E-value=0.00028 Score=74.70 Aligned_cols=109 Identities=15% Similarity=0.184 Sum_probs=64.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEecccccccCCCCChHHHHHHHHHHHH-----------HHHHhCCce
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAA-----------DIIKKGKMC 214 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~-----------~~i~~~~p~ 214 (465)
...+|++|++||||+++|+++.... +.+|+.+++..+-.. ..-..+|.... ..+......
T Consensus 166 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~------~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~g 239 (457)
T PRK11361 166 QASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPES------LLESELFGHEKGAFTGAQTLRQGLFERANEG 239 (457)
T ss_pred CcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHH------HHHHHhcCCCCCCCCCCCCCCCCceEECCCC
Confidence 3579999999999999999998774 468898888766321 11122222110 011223456
Q ss_pred EEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC
Q 012383 215 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF 278 (465)
Q Consensus 215 ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~ 278 (465)
+|||||||.+... ++..|++++++.....+.+. .....++.||+|||..
T Consensus 240 tl~ld~i~~l~~~-------------~q~~L~~~l~~~~~~~~~~~--~~~~~~~rii~~t~~~ 288 (457)
T PRK11361 240 TLLLDEIGEMPLV-------------LQAKLLRILQEREFERIGGH--QTIKVDIRIIAATNRD 288 (457)
T ss_pred EEEEechhhCCHH-------------HHHHHHHHHhcCcEEeCCCC--ceeeeceEEEEeCCCC
Confidence 8999999876432 33455666653221111111 1112457899999863
No 264
>PRK13695 putative NTPase; Provisional
Probab=97.59 E-value=0.00042 Score=64.16 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 012383 151 ILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~el 173 (465)
-++|.|+||+|||++++.+++++
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999988775
No 265
>PRK07261 topology modulation protein; Provisional
Probab=97.57 E-value=0.00022 Score=66.46 Aligned_cols=43 Identities=14% Similarity=0.132 Sum_probs=33.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCCh
Q 012383 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEP 193 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge~ 193 (465)
-|++.|+||+|||+||+.++..++.+.+..+.-.....|...+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~~~~~ 44 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNWQERD 44 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccccccCC
Confidence 3789999999999999999999999888766544443444433
No 266
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.55 E-value=0.00055 Score=65.46 Aligned_cols=23 Identities=22% Similarity=-0.005 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 012383 150 LILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~e 172 (465)
+.++|.||+|+|||++.+.|+..
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 68999999999999999999854
No 267
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=97.54 E-value=7.9e-05 Score=78.81 Aligned_cols=134 Identities=16% Similarity=0.171 Sum_probs=74.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHhC---CceEEecccccccCCCCChHHHHHHHHHHH-----------HHHHHhCCce
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGELESGNAGEPAKLIRQRYREA-----------ADIIKKGKMC 214 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~elg---~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A-----------~~~i~~~~p~ 214 (465)
...++|+|++||||+++|+++..... .+|+.+++..+-.. ..-..+|... ...+......
T Consensus 162 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~------~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~g 235 (445)
T TIGR02915 162 DITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPEN------LLESELFGYEKGAFTGAVKQTLGKIEYAHGG 235 (445)
T ss_pred CCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChH------HHHHHhcCCCCCCcCCCccCCCCceeECCCC
Confidence 35689999999999999999987753 57888888766311 1112223211 0011223467
Q ss_pred EEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC-------CCCChhhhc
Q 012383 215 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF-------STLYAPLIR 287 (465)
Q Consensus 215 ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~-------~~LD~ALlR 287 (465)
.|||||||.+.. .++..|+.++.+.....+.+. .....++-+|+||+.. ..+.+.|..
T Consensus 236 tl~l~~i~~l~~-------------~~q~~l~~~l~~~~~~~~~~~--~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~ 300 (445)
T TIGR02915 236 TLFLDEIGDLPL-------------NLQAKLLRFLQERVIERLGGR--EEIPVDVRIVCATNQDLKRMIAEGTFREDLFY 300 (445)
T ss_pred EEEEechhhCCH-------------HHHHHHHHHHhhCeEEeCCCC--ceeeeceEEEEecCCCHHHHHHcCCccHHHHH
Confidence 899999987643 233445555552111111111 1112467889998765 233333321
Q ss_pred CCCce-EEEeCCCHHHHHH
Q 012383 288 DGRME-KFYWAPTREDRIG 305 (465)
Q Consensus 288 ~GRfd-~~i~~P~~e~R~~ 305 (465)
|+. ..+.+|...+|.+
T Consensus 301 --~l~~~~i~lPpLr~R~~ 317 (445)
T TIGR02915 301 --RIAEISITIPPLRSRDG 317 (445)
T ss_pred --HhccceecCCCchhchh
Confidence 333 2334677766643
No 268
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.51 E-value=0.0015 Score=69.67 Aligned_cols=170 Identities=16% Similarity=0.199 Sum_probs=104.6
Q ss_pred HHHHHhhhhC-CCCCCCeEEEEEcCCCCcHHHHHHHHHHHhC-----CceEEecccccc--------------cCCCCCh
Q 012383 134 VHITKNFMSL-PNIKVPLILGIWGGKGQGKSFQCELVFAKMG-----INPIMMSAGELE--------------SGNAGEP 193 (465)
Q Consensus 134 ~~i~k~~l~~-~~~~~p~glLL~GPPGtGKT~LAraIA~elg-----~~~i~vs~s~L~--------------s~~~Ge~ 193 (465)
..+.++|... ...+.+..+.+.|-||||||.+..-+-.... ...+++++.+|- ....|.+
T Consensus 159 ~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~~ 238 (529)
T KOG2227|consen 159 MDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSLLQDLVSPG 238 (529)
T ss_pred HHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHHHHHHhcCCc
Confidence 4566777753 3556788999999999999999887766642 234566655431 1112221
Q ss_pred -HHHHHHHHHHHHHHHH-hCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceE
Q 012383 194 -AKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI 271 (465)
Q Consensus 194 -~k~Ir~~F~~A~~~i~-~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~V 271 (465)
+......|.. ... ...|-||++||+|.++.+.. + .|+.+ -.|..-...++++
T Consensus 239 ~~~~~~~~~~~---h~~q~k~~~llVlDEmD~L~tr~~---------~----vLy~l----------Fewp~lp~sr~iL 292 (529)
T KOG2227|consen 239 TGMQHLEKFEK---HTKQSKFMLLLVLDEMDHLITRSQ---------T----VLYTL----------FEWPKLPNSRIIL 292 (529)
T ss_pred hhHHHHHHHHH---HHhcccceEEEEechhhHHhhccc---------c----eeeee----------hhcccCCcceeee
Confidence 2222222322 112 23588999999999985432 1 11111 1355567789999
Q ss_pred EEEeCCCCCCChhhhcCCCce------EEEe-CCCHHHHHHHHHHhccCCCCC------hhHHHHHhcCCCc
Q 012383 272 IVTGNDFSTLYAPLIRDGRME------KFYW-APTREDRIGVCKGIFRNDNVA------DDDIVKLVDTFPG 330 (465)
Q Consensus 272 I~TTN~~~~LD~ALlR~GRfd------~~i~-~P~~e~R~~Il~~~l~~~~v~------~~~la~lt~gfsg 330 (465)
|+.+|..+.=|..|.|- +.| ...+ +.+.++..+|+..-+...... .+-.|+.+.+-||
T Consensus 293 iGiANslDlTdR~LprL-~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG 363 (529)
T KOG2227|consen 293 IGIANSLDLTDRFLPRL-NLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG 363 (529)
T ss_pred eeehhhhhHHHHHhhhh-hhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch
Confidence 99999998888777652 222 2223 789999999998887665332 2244555666665
No 269
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=97.51 E-value=9.7e-05 Score=74.48 Aligned_cols=56 Identities=20% Similarity=0.250 Sum_probs=47.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHhC--CceEEecccccccCCCCChHHHHHHHHHHHH
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKMG--INPIMMSAGELESGNAGEPAKLIRQRYREAA 205 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~elg--~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~ 205 (465)
-+++||.||||||||.||-+|++++| ++|.-+.++++.+.-+-.++-+. +-|++|.
T Consensus 64 GravLlaGppgtGKTAlAlaisqELG~kvPFcpmvgSEvyS~EvKKTEvLm-enfRRaI 121 (456)
T KOG1942|consen 64 GRAVLLAGPPGTGKTALALAISQELGPKVPFCPMVGSEVYSNEVKKTEVLM-ENFRRAI 121 (456)
T ss_pred CcEEEEecCCCCchhHHHHHHHHHhCCCCCcccccchhhhhhhhhHHHHHH-HHHHHHh
Confidence 47999999999999999999999986 58999999999988777766543 4577764
No 270
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.50 E-value=0.00011 Score=71.62 Aligned_cols=24 Identities=25% Similarity=0.452 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFA 171 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~ 171 (465)
.|.-+||||+||+|||++|+.++.
T Consensus 11 ~~~~~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 11 IPNMYLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHhcCC
Confidence 367799999999999999999973
No 271
>PRK06762 hypothetical protein; Provisional
Probab=97.50 E-value=0.0002 Score=65.49 Aligned_cols=39 Identities=18% Similarity=0.363 Sum_probs=32.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHhCCceEEeccccccc
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES 187 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s 187 (465)
|..++|.|+||+|||++|+.+++.++...+.++...+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~ 40 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRR 40 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHH
Confidence 678999999999999999999999976666666655543
No 272
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.49 E-value=0.0007 Score=64.75 Aligned_cols=40 Identities=13% Similarity=0.212 Sum_probs=32.4
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEeccc
Q 012383 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG 183 (465)
Q Consensus 144 ~~~~~p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~s 183 (465)
.|+.....++|+|+||+|||++|..+|.+. |.+.++++..
T Consensus 14 GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 14 GGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 477777889999999999999999998774 4566666543
No 273
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=97.48 E-value=0.00011 Score=81.55 Aligned_cols=55 Identities=18% Similarity=0.205 Sum_probs=42.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhCCc----eEEecccc------cccCCCCChHHHHHHHHHHH
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKMGIN----PIMMSAGE------LESGNAGEPAKLIRQRYREA 204 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~elg~~----~i~vs~s~------L~s~~~Ge~~k~Ir~~F~~A 204 (465)
+.++|+||||||||++++++++.++.+ ++++..+. +..-+.|..++.++..|..|
T Consensus 38 ~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~n~~~~~~~~~~~v~~~~g~~~~~~~~~~~ 102 (608)
T TIGR00764 38 RNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYPNPEDPNMPRIVEVPAGEGREIVEDYKKKA 102 (608)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEeCCCCCchHHHHHHHHhhchHHHHHHHHHh
Confidence 489999999999999999999998754 22333332 23446688889999999988
No 274
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.45 E-value=0.00049 Score=72.10 Aligned_cols=80 Identities=19% Similarity=0.149 Sum_probs=52.1
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEecccccccC------CCCC--------hHHHHHHHHHHHHH
Q 012383 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG------NAGE--------PAKLIRQRYREAAD 206 (465)
Q Consensus 144 ~~~~~p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~s~L~s~------~~Ge--------~~k~Ir~~F~~A~~ 206 (465)
.|+.+...+||+|+||+|||+|+..+|... +.+++++++.+-... ..|. .+..+..+++.
T Consensus 77 GGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~--- 153 (372)
T cd01121 77 GGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILAS--- 153 (372)
T ss_pred CCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHH---
Confidence 367777889999999999999999998764 346777765432111 0110 01112233333
Q ss_pred HHHhCCceEEEecccccccCC
Q 012383 207 IIKKGKMCCLMINDLDAGAGR 227 (465)
Q Consensus 207 ~i~~~~p~ILfIDEIDai~~~ 227 (465)
+....|.+|+||+|..+...
T Consensus 154 -i~~~~~~lVVIDSIq~l~~~ 173 (372)
T cd01121 154 -IEELKPDLVIIDSIQTVYSS 173 (372)
T ss_pred -HHhcCCcEEEEcchHHhhcc
Confidence 35678999999999887543
No 275
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.45 E-value=0.00029 Score=65.39 Aligned_cols=34 Identities=18% Similarity=0.150 Sum_probs=28.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecc
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 182 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~ 182 (465)
.+.|+|.|+||+|||++|+.++.+++..++.++.
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~ 35 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGV 35 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCc
Confidence 3579999999999999999999998877665443
No 276
>PRK09354 recA recombinase A; Provisional
Probab=97.43 E-value=0.00052 Score=71.25 Aligned_cols=83 Identities=16% Similarity=0.192 Sum_probs=53.4
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHHHH---hCCceEEecccccccC----CCCC--------hHHHHHHHHHHHHHHH
Q 012383 144 PNIKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELESG----NAGE--------PAKLIRQRYREAADII 208 (465)
Q Consensus 144 ~~~~~p~glLL~GPPGtGKT~LAraIA~e---lg~~~i~vs~s~L~s~----~~Ge--------~~k~Ir~~F~~A~~~i 208 (465)
.|++.-+.++||||||||||+||-.++.+ .|-..++++..+-.+. -.|- ......+.+..+..++
T Consensus 55 GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li 134 (349)
T PRK09354 55 GGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLV 134 (349)
T ss_pred CCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHh
Confidence 47777788999999999999999976654 3556666654431110 0010 0001223344444556
Q ss_pred HhCCceEEEecccccccC
Q 012383 209 KKGKMCCLMINDLDAGAG 226 (465)
Q Consensus 209 ~~~~p~ILfIDEIDai~~ 226 (465)
+...+.+|+||=+-++.+
T Consensus 135 ~s~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 135 RSGAVDLIVVDSVAALVP 152 (349)
T ss_pred hcCCCCEEEEeChhhhcc
Confidence 778899999999988875
No 277
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.42 E-value=0.0016 Score=63.70 Aligned_cols=38 Identities=21% Similarity=0.226 Sum_probs=28.4
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEecc
Q 012383 145 NIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 182 (465)
Q Consensus 145 ~~~~p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~ 182 (465)
|++....++|.||||||||++|..++... |...++++.
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~ 60 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVST 60 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 56667789999999999999986555432 556666653
No 278
>PRK03839 putative kinase; Provisional
Probab=97.41 E-value=0.00014 Score=67.62 Aligned_cols=31 Identities=29% Similarity=0.477 Sum_probs=28.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEEec
Q 012383 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMMS 181 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~elg~~~i~vs 181 (465)
.|+|.|+||+|||++++.+|+.++++++.+.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 4889999999999999999999999887754
No 279
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.39 E-value=0.00064 Score=61.03 Aligned_cols=28 Identities=25% Similarity=0.302 Sum_probs=25.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCceEE
Q 012383 152 LGIWGGKGQGKSFQCELVFAKMGINPIM 179 (465)
Q Consensus 152 lLL~GPPGtGKT~LAraIA~elg~~~i~ 179 (465)
++|.|+||+|||++|+.+++.++..++.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~ 29 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFID 29 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEe
Confidence 7899999999999999999998876654
No 280
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.38 E-value=0.00077 Score=64.97 Aligned_cols=83 Identities=16% Similarity=0.182 Sum_probs=52.0
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHHHHh---------CCceEEecccccccC--------CCC---------------
Q 012383 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---------GINPIMMSAGELESG--------NAG--------------- 191 (465)
Q Consensus 144 ~~~~~p~glLL~GPPGtGKT~LAraIA~el---------g~~~i~vs~s~L~s~--------~~G--------------- 191 (465)
.|++....+.|+||||||||+++..++... +...++++..+-... ..|
T Consensus 14 GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~ 93 (235)
T cd01123 14 GGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARA 93 (235)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEec
Confidence 478888899999999999999999988552 245666665431100 000
Q ss_pred ChHHHHHHHHHHHHHHHHhC-CceEEEecccccccC
Q 012383 192 EPAKLIRQRYREAADIIKKG-KMCCLMINDLDAGAG 226 (465)
Q Consensus 192 e~~k~Ir~~F~~A~~~i~~~-~p~ILfIDEIDai~~ 226 (465)
.+...+...+....+.+... .+.+|+||-|.++..
T Consensus 94 ~~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~ 129 (235)
T cd01123 94 YNSDHQLQLLEELEAILIESSRIKLVIVDSVTALFR 129 (235)
T ss_pred CCHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHH
Confidence 00111223333333444555 899999999988753
No 281
>PLN02200 adenylate kinase family protein
Probab=97.38 E-value=0.00022 Score=69.98 Aligned_cols=41 Identities=39% Similarity=0.685 Sum_probs=34.0
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccc
Q 012383 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 186 (465)
Q Consensus 144 ~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~ 186 (465)
++.+.|..|+|.||||+|||++|+.+|+++|+. .++.++++
T Consensus 38 ~~~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdll 78 (234)
T PLN02200 38 SKEKTPFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLL 78 (234)
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHH
Confidence 456778899999999999999999999999864 56666554
No 282
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.37 E-value=0.00018 Score=64.36 Aligned_cols=30 Identities=20% Similarity=0.315 Sum_probs=27.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCceEEec
Q 012383 152 LGIWGGKGQGKSFQCELVFAKMGINPIMMS 181 (465)
Q Consensus 152 lLL~GPPGtGKT~LAraIA~elg~~~i~vs 181 (465)
|+|+|+||+|||++|+.+|.++|++++..+
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 789999999999999999999999888654
No 283
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.37 E-value=0.0025 Score=63.69 Aligned_cols=122 Identities=7% Similarity=-0.074 Sum_probs=74.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHhCCceE--------------EecccccccCC-CC--ChHHHHHHHHHHHHHHH-
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPI--------------MMSAGELESGN-AG--EPAKLIRQRYREAADII- 208 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~elg~~~i--------------~vs~s~L~s~~-~G--e~~k~Ir~~F~~A~~~i- 208 (465)
.+|..+||+||+|+||..+|.++|+.+-+.-- .-+.+++.--+ .+ -....+|++-+......
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 46889999999999999999999998633210 00111111000 01 12234444444331000
Q ss_pred HhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhhcC
Q 012383 209 KKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRD 288 (465)
Q Consensus 209 ~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~ 288 (465)
..+...|++|+++|.+-. .....|+..++ ++..++.+|.+|+.++.|.|-++.
T Consensus 85 e~~~~KV~II~~ae~m~~-------------~AaNaLLK~LE-------------EPp~~t~fiLit~~~~~lLpTI~S- 137 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLNK-------------QSANSLLKLIE-------------EPPKNTYGIFTTRNENNILNTILS- 137 (261)
T ss_pred hcCCCEEEEeccHhhhCH-------------HHHHHHHHhhc-------------CCCCCeEEEEEECChHhCchHhhh-
Confidence 123467999999986422 22234556666 667888999999999999999986
Q ss_pred CCceEEEe
Q 012383 289 GRMEKFYW 296 (465)
Q Consensus 289 GRfd~~i~ 296 (465)
|+.++..
T Consensus 138 -RCq~~~~ 144 (261)
T PRK05818 138 -RCVQYVV 144 (261)
T ss_pred -heeeeec
Confidence 7655443
No 284
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.36 E-value=0.0034 Score=63.70 Aligned_cols=133 Identities=13% Similarity=0.108 Sum_probs=81.4
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEE----------------ecccccccC-CCCC--hHHHHHHHHHHHHH
Q 012383 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM----------------MSAGELESG-NAGE--PAKLIRQRYREAAD 206 (465)
Q Consensus 146 ~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~----------------vs~s~L~s~-~~Ge--~~k~Ir~~F~~A~~ 206 (465)
-+.|.++||+|| +||+.+|+++|+.+-+.--. -+.+++.-- -.|. ....||++-+.+..
T Consensus 21 ~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~ 98 (290)
T PRK07276 21 DRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQ 98 (290)
T ss_pred CCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhh
Confidence 367889999996 68999999999986432100 011111100 0122 23456666555421
Q ss_pred HHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhh
Q 012383 207 IIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLI 286 (465)
Q Consensus 207 ~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALl 286 (465)
.-..+...|++||++|.+... -...|++.++ ++..++.+|.+|+.++.|-|.++
T Consensus 99 ~p~~~~~kV~II~~ad~m~~~-------------AaNaLLKtLE-------------EPp~~t~~iL~t~~~~~lLpTI~ 152 (290)
T PRK07276 99 SGYEGKQQVFIIKDADKMHVN-------------AANSLLKVIE-------------EPQSEIYIFLLTNDENKVLPTIK 152 (290)
T ss_pred CcccCCcEEEEeehhhhcCHH-------------HHHHHHHHhc-------------CCCCCeEEEEEECChhhCchHHH
Confidence 112455679999999875321 2234555555 55677899999999999999988
Q ss_pred cCCCceEEEeCCCHHHHHHHHH
Q 012383 287 RDGRMEKFYWAPTREDRIGVCK 308 (465)
Q Consensus 287 R~GRfd~~i~~P~~e~R~~Il~ 308 (465)
. |+-.+...|+.+...+++.
T Consensus 153 S--Rcq~i~f~~~~~~~~~~L~ 172 (290)
T PRK07276 153 S--RTQIFHFPKNEAYLIQLLE 172 (290)
T ss_pred H--cceeeeCCCcHHHHHHHHH
Confidence 6 6655555555555555553
No 285
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.34 E-value=0.0023 Score=61.80 Aligned_cols=23 Identities=35% Similarity=0.354 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHH
Q 012383 149 PLILGIWGGKGQGKSFQCELVFA 171 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~ 171 (465)
++.++|+||.|+|||++.+.|+.
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 47899999999999999999983
No 286
>PRK13949 shikimate kinase; Provisional
Probab=97.33 E-value=0.00046 Score=64.25 Aligned_cols=31 Identities=19% Similarity=0.240 Sum_probs=29.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEEec
Q 012383 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMMS 181 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~elg~~~i~vs 181 (465)
.|+|.|+||+|||++++.+|+.++++++.++
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 5899999999999999999999999988866
No 287
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.32 E-value=0.00045 Score=65.78 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhC
Q 012383 151 ILGIWGGKGQGKSFQCELVFAKMG 174 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~elg 174 (465)
.+++.||+|+|||+++++++..+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 478999999999999999998874
No 288
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.32 E-value=0.0013 Score=62.95 Aligned_cols=29 Identities=28% Similarity=0.371 Sum_probs=26.0
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHHHH
Q 012383 144 PNIKVPLILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 144 ~~~~~p~glLL~GPPGtGKT~LAraIA~e 172 (465)
.|++.-..+.|+||||+|||+++..+|..
T Consensus 14 GG~~~g~v~~I~G~~GsGKT~l~~~ia~~ 42 (226)
T cd01393 14 GGIPTGRITEIFGEFGSGKTQLCLQLAVE 42 (226)
T ss_pred CCCcCCcEEEEeCCCCCChhHHHHHHHHH
Confidence 57777789999999999999999998876
No 289
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.32 E-value=0.00021 Score=66.23 Aligned_cols=33 Identities=36% Similarity=0.684 Sum_probs=27.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCceEEecccccc
Q 012383 152 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 186 (465)
Q Consensus 152 lLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~ 186 (465)
|+|.||||+|||++|+.+|.++|+ ..++.++++
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~--~~is~~d~l 34 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGF--THLSAGDLL 34 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC--eEEECChHH
Confidence 789999999999999999999986 445554444
No 290
>PRK13948 shikimate kinase; Provisional
Probab=97.30 E-value=0.00053 Score=64.90 Aligned_cols=45 Identities=16% Similarity=0.031 Sum_probs=36.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCCh
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEP 193 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge~ 193 (465)
++|..|+|.|.+|||||++++.+|+.+|.+|+..+ .+..+..|.+
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D--~~ie~~~g~s 52 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD--RYIERVTGKS 52 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC--HHHHHHHhCC
Confidence 56789999999999999999999999999999765 3444444443
No 291
>PRK08233 hypothetical protein; Provisional
Probab=97.30 E-value=0.0011 Score=60.94 Aligned_cols=32 Identities=22% Similarity=0.237 Sum_probs=26.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHhC-CceEEe
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKMG-INPIMM 180 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~elg-~~~i~v 180 (465)
+..|.+.|+||+|||++|+.++..++ ..++..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~ 35 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLKNSKALYF 35 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCCCCceEEE
Confidence 46788999999999999999999986 344433
No 292
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=97.30 E-value=0.00016 Score=76.74 Aligned_cols=109 Identities=11% Similarity=0.142 Sum_probs=62.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEecccccccCCCCChHHHHHHHHHH-------H----HHHHHhCCce
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYRE-------A----ADIIKKGKMC 214 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~-------A----~~~i~~~~p~ 214 (465)
+..+++.|++||||+++|+++.... +.+|+.+++..+-+.+. -..+|.. + ...+......
T Consensus 157 ~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~------~~~lfg~~~~~~~~~~~~~~g~~~~a~~g 230 (463)
T TIGR01818 157 DITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLI------ESELFGHEKGAFTGANTRRQGRFEQADGG 230 (463)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHH------HHHhcCCCCCCCCCcccCCCCcEEECCCC
Confidence 4579999999999999999998874 45899999876632111 1112221 0 0011233467
Q ss_pred EEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC
Q 012383 215 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF 278 (465)
Q Consensus 215 ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~ 278 (465)
.|||||||.+... ++..|+++++........+. .....++-||+|||..
T Consensus 231 tl~l~ei~~l~~~-------------~q~~ll~~l~~~~~~~~~~~--~~~~~~~rii~~~~~~ 279 (463)
T TIGR01818 231 TLFLDEIGDMPLD-------------AQTRLLRVLADGEFYRVGGR--TPIKVDVRIVAATHQN 279 (463)
T ss_pred eEEEEchhhCCHH-------------HHHHHHHHHhcCcEEECCCC--ceeeeeeEEEEeCCCC
Confidence 8999999876432 23445555552111111111 0112356788888764
No 293
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.30 E-value=0.00083 Score=64.67 Aligned_cols=81 Identities=19% Similarity=0.122 Sum_probs=51.3
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHHHH---h-CCceEEeccccccc--------------------------CC---C
Q 012383 144 PNIKVPLILGIWGGKGQGKSFQCELVFAK---M-GINPIMMSAGELES--------------------------GN---A 190 (465)
Q Consensus 144 ~~~~~p~glLL~GPPGtGKT~LAraIA~e---l-g~~~i~vs~s~L~s--------------------------~~---~ 190 (465)
.|++....+|+.||||||||.++..++.+ . |.+.++++..+-.. .+ .
T Consensus 14 GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~ 93 (226)
T PF06745_consen 14 GGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERI 93 (226)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGS
T ss_pred CCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEecccccc
Confidence 57888899999999999999999976654 2 77777766432110 00 0
Q ss_pred CChHHHHHHHHHHHHHHHHhCCceEEEecccccc
Q 012383 191 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAG 224 (465)
Q Consensus 191 Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai 224 (465)
+.....+..+.....+.++...+.+++||-+..+
T Consensus 94 ~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l 127 (226)
T PF06745_consen 94 GWSPNDLEELLSKIREAIEELKPDRVVIDSLSAL 127 (226)
T ss_dssp T-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHH
T ss_pred cccccCHHHHHHHHHHHHHhcCCCEEEEECHHHH
Confidence 0001123334444444456777899999999988
No 294
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.29 E-value=0.0006 Score=68.47 Aligned_cols=25 Identities=16% Similarity=-0.065 Sum_probs=23.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhC
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKMG 174 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~elg 174 (465)
++++|.||||+|||++.++++..+.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC
Confidence 6899999999999999999999864
No 295
>PRK14532 adenylate kinase; Provisional
Probab=97.28 E-value=0.00023 Score=66.47 Aligned_cols=34 Identities=24% Similarity=0.403 Sum_probs=27.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccc
Q 012383 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 186 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~ 186 (465)
.|+|.||||+|||++|+.+|+++|+.++ +.++++
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~i--s~~d~l 35 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQL--STGDML 35 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEE--eCcHHH
Confidence 4889999999999999999999987554 444443
No 296
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.28 E-value=0.002 Score=76.76 Aligned_cols=147 Identities=15% Similarity=0.169 Sum_probs=98.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEeccccc------ccCC-CCCh--H-HHHHHHHHHHHHHHHhCCceEEE
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL------ESGN-AGEP--A-KLIRQRYREAADIIKKGKMCCLM 217 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L------~s~~-~Ge~--~-k~Ir~~F~~A~~~i~~~~p~ILf 217 (465)
+-+++||-|.||.|||+|..++|+++|-..+.++.++- ...+ .++. + +.....|-.| -....-++
T Consensus 1542 v~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~a-----mr~G~WVl 1616 (4600)
T COG5271 1542 VGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHA-----MRDGGWVL 1616 (4600)
T ss_pred cCCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHH-----hhcCCEEE
Confidence 45789999999999999999999999999999887743 2222 1221 1 0112223333 22345789
Q ss_pred ecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCC-CCceEEEEeCC------CCCCChhhhcCCC
Q 012383 218 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEEN-PRVPIIVTGND------FSTLYAPLIRDGR 290 (465)
Q Consensus 218 IDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~-~~V~VI~TTN~------~~~LD~ALlR~GR 290 (465)
+||+.- ..|-+-.-|..++|+-...-++..+..-.. ++..|.+|-|. ...||..++- |
T Consensus 1617 LDEiNL-------------aSQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n--R 1681 (4600)
T COG5271 1617 LDEINL-------------ASQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN--R 1681 (4600)
T ss_pred eehhhh-------------hHHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--h
Confidence 999842 234455566777787666666666544333 45556666553 3479999986 8
Q ss_pred ceEEEe-CCCHHHHHHHHHHhccCC
Q 012383 291 MEKFYW-APTREDRIGVCKGIFRND 314 (465)
Q Consensus 291 fd~~i~-~P~~e~R~~Il~~~l~~~ 314 (465)
|.+++. ..+.++...|...++..-
T Consensus 1682 FsvV~~d~lt~dDi~~Ia~~~yp~v 1706 (4600)
T COG5271 1682 FSVVKMDGLTTDDITHIANKMYPQV 1706 (4600)
T ss_pred hheEEecccccchHHHHHHhhCCcc
Confidence 988877 888888888888887643
No 297
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=97.27 E-value=0.00067 Score=72.72 Aligned_cols=37 Identities=16% Similarity=0.153 Sum_probs=32.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHhC---CceEEeccccc
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGEL 185 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~elg---~~~i~vs~s~L 185 (465)
...|||+|++||||-.+|++|-+... -+|+.++++.+
T Consensus 164 ~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAi 203 (464)
T COG2204 164 DASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAI 203 (464)
T ss_pred CCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccC
Confidence 45799999999999999999988754 49999998865
No 298
>PRK00625 shikimate kinase; Provisional
Probab=97.27 E-value=0.00028 Score=66.22 Aligned_cols=31 Identities=10% Similarity=-0.047 Sum_probs=29.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEEec
Q 012383 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMMS 181 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~elg~~~i~vs 181 (465)
.|+|.|.||+|||++++.+|+.++++++.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 4899999999999999999999999998876
No 299
>PRK13946 shikimate kinase; Provisional
Probab=97.27 E-value=0.00062 Score=63.91 Aligned_cols=33 Identities=18% Similarity=0.131 Sum_probs=30.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHhCCceEEec
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 181 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs 181 (465)
++.|+|.|+||||||++++.+|+.+|++|+..+
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 467999999999999999999999999988765
No 300
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.26 E-value=0.0018 Score=60.24 Aligned_cols=74 Identities=14% Similarity=0.247 Sum_probs=48.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH---hCCceEE---ecccc----c--ccC--------------CC-CCh---HHHHHHH
Q 012383 151 ILGIWGGKGQGKSFQCELVFAK---MGINPIM---MSAGE----L--ESG--------------NA-GEP---AKLIRQR 200 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~e---lg~~~i~---vs~s~----L--~s~--------------~~-Ge~---~k~Ir~~ 200 (465)
-|.+|+++|.|||++|-.+|-. .|..+.. +++.. . ..+ |. .+. ....+..
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a~~~ 83 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAAAEG 83 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHHHHH
Confidence 4678999999999999988766 3555544 45420 0 000 00 111 2244566
Q ss_pred HHHHHHHHHhCCceEEEecccccc
Q 012383 201 YREAADIIKKGKMCCLMINDLDAG 224 (465)
Q Consensus 201 F~~A~~~i~~~~p~ILfIDEIDai 224 (465)
++.|.+.+......+|+||||-..
T Consensus 84 ~~~a~~~~~~~~~dLlVLDEi~~a 107 (159)
T cd00561 84 WAFAKEAIASGEYDLVILDEINYA 107 (159)
T ss_pred HHHHHHHHhcCCCCEEEEechHhH
Confidence 777777777888999999998543
No 301
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.26 E-value=0.00084 Score=67.27 Aligned_cols=36 Identities=25% Similarity=0.184 Sum_probs=28.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHhCCceEEeccccc
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 185 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L 185 (465)
++.++|.|+||||||++|+.+++.+. .++.++...+
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~-~~~~l~~D~~ 37 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNP-KAVNVNRDDL 37 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCC-CCEEEeccHH
Confidence 46789999999999999999999983 3344454444
No 302
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.26 E-value=0.00082 Score=61.24 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=24.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCceEE
Q 012383 152 LGIWGGKGQGKSFQCELVFAKMGINPIM 179 (465)
Q Consensus 152 lLL~GPPGtGKT~LAraIA~elg~~~i~ 179 (465)
++|.||||||||++|+.+++.++..++.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~ 28 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIE 28 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEe
Confidence 4688999999999999999999866554
No 303
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=97.25 E-value=0.00086 Score=70.19 Aligned_cols=28 Identities=25% Similarity=0.433 Sum_probs=24.2
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHh
Q 012383 146 IKVPLILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 146 ~~~p~glLL~GPPGtGKT~LAraIA~el 173 (465)
-.+|+||.|||.-|||||+|--.....+
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~~ 138 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLMDLFYDAL 138 (467)
T ss_pred CCCCceEEEecccCcchhHHHHHHhhcC
Confidence 3569999999999999999999888553
No 304
>PRK14531 adenylate kinase; Provisional
Probab=97.25 E-value=0.00032 Score=65.78 Aligned_cols=30 Identities=27% Similarity=0.306 Sum_probs=26.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhCCceEE
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~elg~~~i~ 179 (465)
+-|++.||||+|||++++.+|+.+|+..+.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is 32 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLS 32 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEe
Confidence 458999999999999999999999877654
No 305
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.24 E-value=0.0011 Score=64.80 Aligned_cols=82 Identities=17% Similarity=0.141 Sum_probs=53.4
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHHHH---hCCceEEecccccc----c-----------------------------
Q 012383 144 PNIKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELE----S----------------------------- 187 (465)
Q Consensus 144 ~~~~~p~glLL~GPPGtGKT~LAraIA~e---lg~~~i~vs~s~L~----s----------------------------- 187 (465)
.|+++...+|++||||||||.+|..++.+ .|.+.++++..+-. .
T Consensus 16 GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i~~~~~~~g~~~~~~~~~g~l~~~d~~~~~~~ 95 (237)
T TIGR03877 16 GGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVRRNMAQFGWDVRKYEEEGKFAIVDAFTGGIG 95 (237)
T ss_pred CCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHHHHHHHHhCCCHHHHhhcCCEEEEeccccccc
Confidence 47888899999999999999999876654 36666665533210 0
Q ss_pred ------CCCCChHHHHHHHHHHHHHHHHhCCceEEEeccccccc
Q 012383 188 ------GNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGA 225 (465)
Q Consensus 188 ------~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~ 225 (465)
.|+-.....+..++....+.+....+.+|+||-|-.+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSls~l~ 139 (237)
T TIGR03877 96 EAAEREKYVVKDPTDVRELIDVLRQAIRDINAKRVVIDSVTTLY 139 (237)
T ss_pred cccccccccccCcccHHHHHHHHHHHHHHhCCCEEEEcChhHhh
Confidence 01101122344555555555566678899999998764
No 306
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.23 E-value=0.00026 Score=65.12 Aligned_cols=31 Identities=32% Similarity=0.354 Sum_probs=29.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEEec
Q 012383 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMMS 181 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~elg~~~i~vs 181 (465)
.||++|-||||||+++..||..+|+.+|.++
T Consensus 9 NILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 9 NILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 6899999999999999999999999998876
No 307
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.23 E-value=0.00072 Score=64.09 Aligned_cols=121 Identities=17% Similarity=0.071 Sum_probs=56.2
Q ss_pred EEEEEcCCCCcHHHHHHHH-HHH---hCCceEEecccccc----cCCCCChHH--HH----------HHHHHHHHHHHHh
Q 012383 151 ILGIWGGKGQGKSFQCELV-FAK---MGINPIMMSAGELE----SGNAGEPAK--LI----------RQRYREAADIIKK 210 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraI-A~e---lg~~~i~vs~s~L~----s~~~Ge~~k--~I----------r~~F~~A~~~i~~ 210 (465)
..+++|.||+|||+.|-.. ... .|..++. +-..|. ....+.... ++ ...+... ...
T Consensus 2 I~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 77 (193)
T PF05707_consen 2 IYLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDW---RKL 77 (193)
T ss_dssp EEEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHH---TTS
T ss_pred EEEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhh---ccc
Confidence 4689999999999988654 333 2555554 332221 111111111 00 0111111 011
Q ss_pred CCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhhcCCC
Q 012383 211 GKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 290 (465)
Q Consensus 211 ~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GR 290 (465)
...+||+|||+....+.|.... ......+ ..| . . ....+.-||.+|.++..||+.+++ .
T Consensus 78 ~~~~liviDEa~~~~~~r~~~~--~~~~~~~-~~l----~---------~---hRh~g~diiliTQ~~~~id~~ir~--l 136 (193)
T PF05707_consen 78 PKGSLIVIDEAQNFFPSRSWKG--KKVPEII-EFL----A---------Q---HRHYGWDIILITQSPSQIDKFIRD--L 136 (193)
T ss_dssp GTT-EEEETTGGGTSB---T-T------HHH-HGG----G---------G---CCCTT-EEEEEES-GGGB-HHHHC--C
T ss_pred CCCcEEEEECChhhcCCCcccc--ccchHHH-HHH----H---------H---hCcCCcEEEEEeCCHHHHhHHHHH--H
Confidence 2578999999999988875311 1112222 122 1 1 233567899999999999998864 7
Q ss_pred ceEEEe
Q 012383 291 MEKFYW 296 (465)
Q Consensus 291 fd~~i~ 296 (465)
.+..+.
T Consensus 137 ve~~~~ 142 (193)
T PF05707_consen 137 VEYHYH 142 (193)
T ss_dssp EEEEEE
T ss_pred HheEEE
Confidence 777665
No 308
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.22 E-value=0.001 Score=60.51 Aligned_cols=34 Identities=21% Similarity=0.273 Sum_probs=28.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCceEEeccccc
Q 012383 152 LGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGEL 185 (465)
Q Consensus 152 lLL~GPPGtGKT~LAraIA~el---g~~~i~vs~s~L 185 (465)
++|.|+||+|||++|+.++..+ +...+.++...+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~ 38 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNV 38 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 6899999999999999999998 766676665444
No 309
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.22 E-value=0.0037 Score=60.51 Aligned_cols=38 Identities=13% Similarity=0.100 Sum_probs=31.0
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHHHHh----CCceEEecc
Q 012383 145 NIKVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSA 182 (465)
Q Consensus 145 ~~~~p~glLL~GPPGtGKT~LAraIA~el----g~~~i~vs~ 182 (465)
|+.+..-++|.|+||+|||+++..++... |.++++++.
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 77777789999999999999999877663 777777663
No 310
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.21 E-value=0.00032 Score=65.29 Aligned_cols=28 Identities=32% Similarity=0.434 Sum_probs=25.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCceEE
Q 012383 152 LGIWGGKGQGKSFQCELVFAKMGINPIM 179 (465)
Q Consensus 152 lLL~GPPGtGKT~LAraIA~elg~~~i~ 179 (465)
|+|.||||+|||++|+.+|+++|+..+.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~ 29 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIS 29 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEE
Confidence 7899999999999999999998876554
No 311
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.19 E-value=0.0036 Score=58.93 Aligned_cols=27 Identities=22% Similarity=0.244 Sum_probs=22.7
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHH
Q 012383 146 IKVPLILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 146 ~~~p~glLL~GPPGtGKT~LAraIA~e 172 (465)
+++...+.|.||.|+|||+|.+++...
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~il~~ 44 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEGLYA 44 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhc
Confidence 445567899999999999999999744
No 312
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=97.18 E-value=0.0018 Score=68.12 Aligned_cols=131 Identities=13% Similarity=0.166 Sum_probs=73.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEecccccccCCCCChHHHHHHHHHHHH-----------HHHHhCCce
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAA-----------DIIKKGKMC 214 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~-----------~~i~~~~p~ 214 (465)
...++++|++||||+++|+++.... +.+|+.++++.+...+ .-..+|.... ..+......
T Consensus 162 ~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~------~~~~lfg~~~~~~~~~~~~~~g~~~~a~~g 235 (441)
T PRK10365 162 EATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESL------LESELFGHEKGAFTGADKRREGRFVEADGG 235 (441)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHH------HHHHhcCCCCCCcCCCCcCCCCceeECCCC
Confidence 4679999999999999999997664 4689999988653111 1112232110 011233467
Q ss_pred EEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhhcCCCce--
Q 012383 215 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME-- 292 (465)
Q Consensus 215 ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd-- 292 (465)
.|||||||.+... ++.-|+..++......+.+. .....++-+|+||+..- ..++.+|+|.
T Consensus 236 tl~ldei~~l~~~-------------~q~~l~~~l~~~~~~~~~~~--~~~~~~~rii~~t~~~~---~~~~~~~~~~~~ 297 (441)
T PRK10365 236 TLFLDEIGDISPM-------------MQVRLLRAIQEREVQRVGSN--QTISVDVRLIAATHRDL---AAEVNAGRFRQD 297 (441)
T ss_pred EEEEeccccCCHH-------------HHHHHHHHHccCcEEeCCCC--ceeeeceEEEEeCCCCH---HHHHHcCCchHH
Confidence 8999999986532 22334445542211111111 01123566888887642 2344556663
Q ss_pred -------EEEeCCCHHHH
Q 012383 293 -------KFYWAPTREDR 303 (465)
Q Consensus 293 -------~~i~~P~~e~R 303 (465)
..+.+|...+|
T Consensus 298 l~~~l~~~~i~~ppLreR 315 (441)
T PRK10365 298 LYYRLNVVAIEVPSLRQR 315 (441)
T ss_pred HHHHhccceecCCChhhc
Confidence 33446666555
No 313
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.18 E-value=0.0022 Score=63.76 Aligned_cols=82 Identities=17% Similarity=0.132 Sum_probs=52.0
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHHHH---hCCceEEeccccccc----------CCCCC---------------h--
Q 012383 144 PNIKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELES----------GNAGE---------------P-- 193 (465)
Q Consensus 144 ~~~~~p~glLL~GPPGtGKT~LAraIA~e---lg~~~i~vs~s~L~s----------~~~Ge---------------~-- 193 (465)
.|+++...+|++||||||||++|-.+|.+ .|-+.++++..+-.. ...|- +
T Consensus 31 GGip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~~~~~~~~l~~~a~~~g~d~~~~~~~l~~id~~~~~ 110 (259)
T TIGR03878 31 GGIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESPANFVYTSLKERAKAMGVDFDKIEENIILIDAASST 110 (259)
T ss_pred CCeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCchHHHHHHHHHHHHcCCCHHHHhCCEEEEECCCch
Confidence 47777889999999999999999987665 355666665432100 00010 0
Q ss_pred --HHHHHHHHHHHHHHHHhCCceEEEeccccccc
Q 012383 194 --AKLIRQRYREAADIIKKGKMCCLMINDLDAGA 225 (465)
Q Consensus 194 --~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~ 225 (465)
...+..++......+++..+.+|+||=|-++.
T Consensus 111 ~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~ 144 (259)
T TIGR03878 111 ELRENVPNLLATLAYAIKEYKVKNTVIDSITGLY 144 (259)
T ss_pred hhhhhHHHHHHHHHHHHHhhCCCEEEEcCchHhc
Confidence 02234444455455567788899999886653
No 314
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.17 E-value=0.00037 Score=61.64 Aligned_cols=30 Identities=30% Similarity=0.419 Sum_probs=27.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCceEEec
Q 012383 152 LGIWGGKGQGKSFQCELVFAKMGINPIMMS 181 (465)
Q Consensus 152 lLL~GPPGtGKT~LAraIA~elg~~~i~vs 181 (465)
|.+.|+||||||++|+.+|..+|++++...
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999999999988766
No 315
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.17 E-value=0.00039 Score=65.62 Aligned_cols=34 Identities=24% Similarity=0.300 Sum_probs=27.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccc
Q 012383 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 186 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~ 186 (465)
-|+|.||||+|||++|+.||+.+ ++..++.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~--~i~hlstgd~~ 35 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL--GLPHLDTGDIL 35 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh--CCcEEcHhHHh
Confidence 47899999999999999999994 45566655554
No 316
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=97.15 E-value=0.00041 Score=74.29 Aligned_cols=121 Identities=20% Similarity=0.277 Sum_probs=69.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEeccccc-----ccCCCCChHHHH-------HHHHHHHHHHHHhC
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGEL-----ESGNAGEPAKLI-------RQRYREAADIIKKG 211 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~s~L-----~s~~~Ge~~k~I-------r~~F~~A~~~i~~~ 211 (465)
+.+..|||.|+.||||-.+|++|-+.. ..+|+.++++-| +|...|--...+ +..|+-|
T Consensus 244 ~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlESELFGHeKGAFTGA~~~r~GrFElA------- 316 (550)
T COG3604 244 KSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLESELFGHEKGAFTGAINTRRGRFELA------- 316 (550)
T ss_pred cCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHHHHHHHhcccccccccchhccCcceeec-------
Confidence 445789999999999999999998775 458999998765 333333211110 1223322
Q ss_pred CceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhhcCCCc
Q 012383 212 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 291 (465)
Q Consensus 212 ~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRf 291 (465)
.-.-||+|||-.+- -.++.=|+..+.+...-.+.+. ..-.-.|-||++||+ +|-. ..|.|+|
T Consensus 317 dGGTLFLDEIGelP-------------L~lQaKLLRvLQegEieRvG~~--r~ikVDVRiIAATNR--DL~~-~V~~G~F 378 (550)
T COG3604 317 DGGTLFLDEIGELP-------------LALQAKLLRVLQEGEIERVGGD--RTIKVDVRVIAATNR--DLEE-MVRDGEF 378 (550)
T ss_pred CCCeEechhhccCC-------------HHHHHHHHHHHhhcceeecCCC--ceeEEEEEEEeccch--hHHH-HHHcCcc
Confidence 34579999995432 2233445555542221111111 011245789999998 3433 3455665
Q ss_pred e
Q 012383 292 E 292 (465)
Q Consensus 292 d 292 (465)
-
T Consensus 379 R 379 (550)
T COG3604 379 R 379 (550)
T ss_pred h
Confidence 4
No 317
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.15 E-value=0.00051 Score=67.33 Aligned_cols=35 Identities=31% Similarity=0.462 Sum_probs=29.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEec
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 181 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs 181 (465)
+.|.-|+|.||||+|||++|+.+|+.+|++++.+.
T Consensus 4 ~~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~g 38 (229)
T PTZ00088 4 KGPLKIVLFGAPGVGKGTFAEILSKKENLKHINMG 38 (229)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCcEEECC
Confidence 34556999999999999999999999987666543
No 318
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.14 E-value=0.0014 Score=69.20 Aligned_cols=75 Identities=15% Similarity=0.168 Sum_probs=46.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCc------eEEeccc--------------ccccCCCCChHHH-H---HHHHHHHHH
Q 012383 151 ILGIWGGKGQGKSFQCELVFAKMGIN------PIMMSAG--------------ELESGNAGEPAKL-I---RQRYREAAD 206 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~elg~~------~i~vs~s--------------~L~s~~~Ge~~k~-I---r~~F~~A~~ 206 (465)
-++|.||||||||++++.|++....+ ++.+... ++.....+++... + ..+...|..
T Consensus 170 ~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~Ae~ 249 (415)
T TIGR00767 170 RGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKAKR 249 (415)
T ss_pred EEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHHHH
Confidence 48999999999999999999985433 2222211 1112233444322 2 233334433
Q ss_pred HHHhCCceEEEeccccccc
Q 012383 207 IIKKGKMCCLMINDLDAGA 225 (465)
Q Consensus 207 ~i~~~~p~ILfIDEIDai~ 225 (465)
....++..||||||+..++
T Consensus 250 ~~~~GkdVVLlIDEitR~a 268 (415)
T TIGR00767 250 LVEHKKDVVILLDSITRLA 268 (415)
T ss_pred HHHcCCCeEEEEEChhHHH
Confidence 3347788999999998774
No 319
>PRK06547 hypothetical protein; Provisional
Probab=97.14 E-value=0.0005 Score=64.39 Aligned_cols=43 Identities=23% Similarity=0.296 Sum_probs=33.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCC
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAG 191 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~G 191 (465)
..|..|++.|++|+|||++|+.+++.+++.++.+ ..+...+.+
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~--d~~~~~~~~ 55 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHL--DDLYPGWHG 55 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecc--cceeccccc
Confidence 5578999999999999999999999998776654 344444433
No 320
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=97.13 E-value=0.0023 Score=70.58 Aligned_cols=101 Identities=20% Similarity=0.130 Sum_probs=64.3
Q ss_pred ccCCCCCchhHHHHHHHHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCC----ceEEecccccccCCCCC-
Q 012383 118 TIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI----NPIMMSAGELESGNAGE- 192 (465)
Q Consensus 118 ~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~----~~i~vs~s~L~s~~~Ge- 192 (465)
+..+..+|+.|+-.-+..+...+.. +-.+.+..|+|+|+||||||++|+++|..++. +++.++...+.....|+
T Consensus 362 l~~G~~pP~~f~rpeV~~iL~~~~~-~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~~l~ge~ 440 (568)
T PRK05537 362 LREGLEIPEWFSFPEVVAELRRTYP-PRHKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKHLSSEL 440 (568)
T ss_pred HHCCCCCChhhcHHHHHHHHHHHhc-cccCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHHhccCCC
Confidence 3446667777777777777777654 34455778999999999999999999999875 45666665554333333
Q ss_pred ------hHHHHHHHHHHHHHHHHhCCceEEEeccc
Q 012383 193 ------PAKLIRQRYREAADIIKKGKMCCLMINDL 221 (465)
Q Consensus 193 ------~~k~Ir~~F~~A~~~i~~~~p~ILfIDEI 221 (465)
...+++.+-..|.+++..+ .++++|-+
T Consensus 441 ~f~~~er~~~~~~l~~~a~~v~~~G--g~vI~~~~ 473 (568)
T PRK05537 441 GFSKEDRDLNILRIGFVASEITKNG--GIAICAPI 473 (568)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhCC--CEEEEEeC
Confidence 1223333323443444444 46666654
No 321
>PRK14527 adenylate kinase; Provisional
Probab=97.13 E-value=0.00041 Score=65.29 Aligned_cols=33 Identities=21% Similarity=0.343 Sum_probs=28.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEE
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~ 179 (465)
+.|..+++.||||+|||++|+.+|+++|+..+.
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is 36 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELGLKKLS 36 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCC
Confidence 457889999999999999999999999875443
No 322
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=97.13 E-value=0.0017 Score=73.80 Aligned_cols=83 Identities=17% Similarity=0.173 Sum_probs=52.7
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHHHH---hCCceEEecccccccC----CCCCh--------HHHHHHHHHHHHHHH
Q 012383 144 PNIKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELESG----NAGEP--------AKLIRQRYREAADII 208 (465)
Q Consensus 144 ~~~~~p~glLL~GPPGtGKT~LAraIA~e---lg~~~i~vs~s~L~s~----~~Ge~--------~k~Ir~~F~~A~~~i 208 (465)
.|++.-..++|+||||||||+||..++.. .|-..++++..+-.+. ..|-. .......+..+..++
T Consensus 55 GGip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv 134 (790)
T PRK09519 55 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLI 134 (790)
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHh
Confidence 47777889999999999999999754443 4556666665442220 01110 001112333344455
Q ss_pred HhCCceEEEecccccccC
Q 012383 209 KKGKMCCLMINDLDAGAG 226 (465)
Q Consensus 209 ~~~~p~ILfIDEIDai~~ 226 (465)
+...+.+|+||-|.++..
T Consensus 135 ~~~~~~LVVIDSI~aL~~ 152 (790)
T PRK09519 135 RSGALDIVVIDSVAALVP 152 (790)
T ss_pred hcCCCeEEEEcchhhhcc
Confidence 677899999999999886
No 323
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.12 E-value=0.00082 Score=71.29 Aligned_cols=63 Identities=17% Similarity=0.152 Sum_probs=40.0
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHH----hCCceEEecccccccCCCCChHHHHHHHHHHHHHHHH-hCCceEEEecc
Q 012383 146 IKVPLILGIWGGKGQGKSFQCELVFAK----MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMIND 220 (465)
Q Consensus 146 ~~~p~glLL~GPPGtGKT~LAraIA~e----lg~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~-~~~p~ILfIDE 220 (465)
+.....+++.||||||||+++.+++.+ .| -.++.+.|. ..+-. ..+. -....+|+|||
T Consensus 206 ve~~~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf-----------~~L~~---~~lg~v~~~DlLI~DE 268 (449)
T TIGR02688 206 VEPNYNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLF-----------YNIST---RQIGLVGRWDVVAFDE 268 (449)
T ss_pred HhcCCcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHH-----------HHHHH---HHHhhhccCCEEEEEc
Confidence 344578999999999999999998877 23 122222222 12111 1112 45678999999
Q ss_pred ccccc
Q 012383 221 LDAGA 225 (465)
Q Consensus 221 IDai~ 225 (465)
+--+.
T Consensus 269 vgylp 273 (449)
T TIGR02688 269 VATLK 273 (449)
T ss_pred CCCCc
Confidence 96543
No 324
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.12 E-value=0.0012 Score=64.93 Aligned_cols=69 Identities=17% Similarity=0.198 Sum_probs=41.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCceEEecccccccC---CCCChHHHHHHHHHHHHHHHHhCCceEEEeccc
Q 012383 152 LGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG---NAGEPAKLIRQRYREAADIIKKGKMCCLMINDL 221 (465)
Q Consensus 152 lLL~GPPGtGKT~LAraIA~el---g~~~i~vs~s~L~s~---~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEI 221 (465)
|+|.|+||+|||++|+.++..+ +..++.++...+... |....+..++.....+...+-. ...++++|..
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~~~~~~~~~~e~~~~~~~~~~i~~~l~-~~~~VI~D~~ 76 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRESFPVWKEKYEEFIRDSTLYLIKTALK-NKYSVIVDDT 76 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHHHhHHhhHHhHHHHHHHHHHHHHHHHh-CCCeEEEecc
Confidence 6899999999999999999987 566677765444221 2222333444433322211112 2345777764
No 325
>PRK04296 thymidine kinase; Provisional
Probab=97.11 E-value=0.0015 Score=61.86 Aligned_cols=71 Identities=14% Similarity=0.185 Sum_probs=42.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh---CCceEEeccc----cc---ccCCCCChH-----HHHHHHHHHHHHHHHhCCce
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG----EL---ESGNAGEPA-----KLIRQRYREAADIIKKGKMC 214 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~s----~L---~s~~~Ge~~-----k~Ir~~F~~A~~~i~~~~p~ 214 (465)
...+++||||+|||+++..++..+ |..++.++++ .. .....|-.. .....++..+.+ ....+.
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~--~~~~~d 80 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE--EGEKID 80 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHh--hCCCCC
Confidence 467899999999999998887764 5565655431 10 111123211 122334444322 345678
Q ss_pred EEEecccc
Q 012383 215 CLMINDLD 222 (465)
Q Consensus 215 ILfIDEID 222 (465)
+|+|||+.
T Consensus 81 vviIDEaq 88 (190)
T PRK04296 81 CVLIDEAQ 88 (190)
T ss_pred EEEEEccc
Confidence 99999993
No 326
>PRK04040 adenylate kinase; Provisional
Probab=97.11 E-value=0.00055 Score=64.98 Aligned_cols=31 Identities=16% Similarity=0.215 Sum_probs=26.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHh--CCceE
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAKM--GINPI 178 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~el--g~~~i 178 (465)
+|+.++|+|+||||||++++.++.++ +..++
T Consensus 1 ~~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~ 33 (188)
T PRK04040 1 MMKVVVVTGVPGVGKTTVLNKALEKLKEDYKIV 33 (188)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHhccCCeEE
Confidence 36789999999999999999999999 55553
No 327
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.10 E-value=0.00066 Score=62.04 Aligned_cols=27 Identities=30% Similarity=0.375 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCceEE
Q 012383 152 LGIWGGKGQGKSFQCELVFAKMGINPIM 179 (465)
Q Consensus 152 lLL~GPPGtGKT~LAraIA~elg~~~i~ 179 (465)
|.|+|+||||||+|++.+++. |.+++.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v~ 28 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVVP 28 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE-
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEEe
Confidence 679999999999999999998 887664
No 328
>PRK06217 hypothetical protein; Validated
Probab=97.09 E-value=0.00052 Score=64.25 Aligned_cols=31 Identities=16% Similarity=0.233 Sum_probs=27.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEEec
Q 012383 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMMS 181 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~elg~~~i~vs 181 (465)
-|+|.|+||+|||++|+++++.+|++++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 4899999999999999999999998876654
No 329
>PRK05973 replicative DNA helicase; Provisional
Probab=97.09 E-value=0.0093 Score=58.89 Aligned_cols=40 Identities=13% Similarity=0.156 Sum_probs=31.3
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEeccc
Q 012383 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG 183 (465)
Q Consensus 144 ~~~~~p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~s 183 (465)
.|+.+-..++|.|+||+|||+++-.++.+. |.+.++++..
T Consensus 59 GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 59 SQLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred CCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 477777889999999999999998777653 6666666543
No 330
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.09 E-value=0.0024 Score=59.70 Aligned_cols=32 Identities=25% Similarity=0.286 Sum_probs=27.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCceEEeccc
Q 012383 152 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 183 (465)
Q Consensus 152 lLL~GPPGtGKT~LAraIA~elg~~~i~vs~s 183 (465)
+|+.|+||+|||++|..++.+.+.+.+++...
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~ 33 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATA 33 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEcc
Confidence 68999999999999999998878777777544
No 331
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.08 E-value=0.00057 Score=63.19 Aligned_cols=29 Identities=41% Similarity=0.698 Sum_probs=25.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEE
Q 012383 151 ILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~elg~~~i~ 179 (465)
.++|.||||+|||++|+.+++++|+..+.
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~~~ 33 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTHLS 33 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 68889999999999999999999865443
No 332
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=97.08 E-value=0.0018 Score=65.60 Aligned_cols=41 Identities=20% Similarity=0.403 Sum_probs=32.0
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHHHHh---------CCceEEecccc
Q 012383 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---------GINPIMMSAGE 184 (465)
Q Consensus 144 ~~~~~p~glLL~GPPGtGKT~LAraIA~el---------g~~~i~vs~s~ 184 (465)
.|++....++++||||||||.+|-.+|... +-..++++..+
T Consensus 90 GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 90 GGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 477888899999999999999999888763 22566666543
No 333
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=97.08 E-value=0.00087 Score=73.94 Aligned_cols=135 Identities=19% Similarity=0.236 Sum_probs=71.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCChHHH-----HHHHHHHHHHHHHhCCceEEEeccc
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKL-----IRQRYREAADIIKKGKMCCLMINDL 221 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge~~k~-----Ir~~F~~A~~~i~~~~p~ILfIDEI 221 (465)
+---.|||+|.||||||.+.+.+++-+-...+. ++- -+.-+|-+... -+++.-+. ..+-.....|..|||+
T Consensus 460 R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yT-SGk--GsSavGLTayVtrd~dtkqlVLes-GALVLSD~GiCCIDEF 535 (804)
T KOG0478|consen 460 RGDINILLVGDPGTSKSQLLQYCHRLLPRGVYT-SGK--GSSAVGLTAYVTKDPDTRQLVLES-GALVLSDNGICCIDEF 535 (804)
T ss_pred cccceEEEecCCCcCHHHHHHHHHHhCCcceee-cCC--ccchhcceeeEEecCccceeeeec-CcEEEcCCceEEchhh
Confidence 334689999999999999999998875433322 110 00001110000 00111110 1111334568899999
Q ss_pred ccccC-CCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC-------------CCChhhhc
Q 012383 222 DAGAG-RMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-------------TLYAPLIR 287 (465)
Q Consensus 222 Dai~~-~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~-------------~LD~ALlR 287 (465)
|++-. .|+ -...-|-++|+ ++. .-|.. ..-+.+.-||+++|-.+ .|+|.|++
T Consensus 536 DKM~dStrS-----vLhEvMEQQTv-SIA-------KAGII-~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLS 601 (804)
T KOG0478|consen 536 DKMSDSTRS-----VLHEVMEQQTL-SIA-------KAGII-ASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLS 601 (804)
T ss_pred hhhhHHHHH-----HHHHHHHHhhh-hHh-------hccee-eeccccceeeeeeccccccCCCCCchhhccCCChhhhh
Confidence 99732 221 11112222232 111 11221 12346778999999332 68999998
Q ss_pred CCCceEEEe---CCCHH
Q 012383 288 DGRMEKFYW---APTRE 301 (465)
Q Consensus 288 ~GRfd~~i~---~P~~e 301 (465)
|||.+|. .|++.
T Consensus 602 --RFDLIylllD~~DE~ 616 (804)
T KOG0478|consen 602 --RFDLIFLLLDKPDER 616 (804)
T ss_pred --hhcEEEEEecCcchh
Confidence 9999888 55554
No 334
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.07 E-value=0.0013 Score=68.79 Aligned_cols=76 Identities=17% Similarity=0.231 Sum_probs=45.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCC-----ceEE--ec-------------ccccccCCCCChH-HHH---HHHHHHHHH
Q 012383 151 ILGIWGGKGQGKSFQCELVFAKMGI-----NPIM--MS-------------AGELESGNAGEPA-KLI---RQRYREAAD 206 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~elg~-----~~i~--vs-------------~s~L~s~~~Ge~~-k~I---r~~F~~A~~ 206 (465)
-.||.||||||||+|++.+++.+.. .++. +. ...+...+..++. ..+ ......|..
T Consensus 135 R~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~~~Ae~ 214 (380)
T PRK12608 135 RGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVLERAKR 214 (380)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHHHHHHH
Confidence 3599999999999999999998633 2222 11 0112222222222 222 222344444
Q ss_pred HHHhCCceEEEecccccccC
Q 012383 207 IIKKGKMCCLMINDLDAGAG 226 (465)
Q Consensus 207 ~i~~~~p~ILfIDEIDai~~ 226 (465)
....++..+|++||+..++.
T Consensus 215 f~~~GkdVVLvlDsltr~A~ 234 (380)
T PRK12608 215 LVEQGKDVVILLDSLTRLAR 234 (380)
T ss_pred HHHcCCCEEEEEeCcHHHHH
Confidence 44588899999999987743
No 335
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.06 E-value=0.0027 Score=62.72 Aligned_cols=38 Identities=16% Similarity=0.181 Sum_probs=30.1
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHHHHh----CCceEEecc
Q 012383 145 NIKVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSA 182 (465)
Q Consensus 145 ~~~~p~glLL~GPPGtGKT~LAraIA~el----g~~~i~vs~ 182 (465)
|+.+-..++|.||||+|||+++..+|..+ |.++++++.
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 56666788999999999999999887763 666666654
No 336
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.06 E-value=0.0031 Score=58.99 Aligned_cols=34 Identities=24% Similarity=0.395 Sum_probs=29.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEEecccc
Q 012383 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE 184 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~ 184 (465)
.+|+.||||+|||++|..++.+++.+.+++....
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~ 36 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQ 36 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCC
Confidence 5899999999999999999999887777766544
No 337
>PRK14530 adenylate kinase; Provisional
Probab=97.05 E-value=0.0006 Score=65.46 Aligned_cols=30 Identities=20% Similarity=0.365 Sum_probs=26.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEEe
Q 012383 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~elg~~~i~v 180 (465)
.|+|.||||+|||++|+.+|+.+|++++.+
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 488899999999999999999999776643
No 338
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.04 E-value=0.00064 Score=63.87 Aligned_cols=42 Identities=17% Similarity=0.114 Sum_probs=34.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCCh
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEP 193 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge~ 193 (465)
+.|.|.|++|+|||++.+++|+.++.+|+.++ .++.+..|.+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D--~~Ie~~~g~s 44 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD--QEIEKRTGMS 44 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch--HHHHHHHCcC
Confidence 46889999999999999999999999999876 3444444443
No 339
>PRK06696 uridine kinase; Validated
Probab=97.04 E-value=0.0015 Score=63.28 Aligned_cols=40 Identities=23% Similarity=0.261 Sum_probs=33.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEecccccc
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELE 186 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~s~L~ 186 (465)
..|..|.+.|+||+|||++|+.|+..+ |.+++.++...+.
T Consensus 20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 20 TRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 457899999999999999999999998 6677776655544
No 340
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.04 E-value=0.0036 Score=63.93 Aligned_cols=29 Identities=24% Similarity=0.409 Sum_probs=26.1
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHHHH
Q 012383 144 PNIKVPLILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 144 ~~~~~p~glLL~GPPGtGKT~LAraIA~e 172 (465)
.|++....++|+||||||||.+|-.+|..
T Consensus 97 GGi~~g~vtei~G~~GsGKT~l~~~~~~~ 125 (317)
T PRK04301 97 GGIETQSITEFYGEFGSGKTQICHQLAVN 125 (317)
T ss_pred CCccCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 47888889999999999999999998876
No 341
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.03 E-value=0.0075 Score=64.88 Aligned_cols=83 Identities=17% Similarity=0.156 Sum_probs=51.6
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEecccccccC------CCCChHHHHH----HHHHHHHHHHHh
Q 012383 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG------NAGEPAKLIR----QRYREAADIIKK 210 (465)
Q Consensus 144 ~~~~~p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~s~L~s~------~~Ge~~k~Ir----~~F~~A~~~i~~ 210 (465)
.|+.+...+||+|+||+|||+|+..++... |-+++++++.+-... ..|-....+. ..+....+.+..
T Consensus 89 GGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~ 168 (454)
T TIGR00416 89 GGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEE 168 (454)
T ss_pred CCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHh
Confidence 377777889999999999999999987764 446777776432211 0111000000 001122233466
Q ss_pred CCceEEEecccccccC
Q 012383 211 GKMCCLMINDLDAGAG 226 (465)
Q Consensus 211 ~~p~ILfIDEIDai~~ 226 (465)
..|.+|+||.|-.+..
T Consensus 169 ~~~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 169 ENPQACVIDSIQTLYS 184 (454)
T ss_pred cCCcEEEEecchhhcc
Confidence 7899999999987643
No 342
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.01 E-value=0.0067 Score=58.36 Aligned_cols=39 Identities=15% Similarity=0.175 Sum_probs=30.7
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHHHH---hCCceEEecc
Q 012383 144 PNIKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSA 182 (465)
Q Consensus 144 ~~~~~p~glLL~GPPGtGKT~LAraIA~e---lg~~~i~vs~ 182 (465)
.|+++...++|.|+||+|||.+|..++.+ .|...++++.
T Consensus 11 gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~ 52 (224)
T TIGR03880 11 GGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISL 52 (224)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 47777789999999999999999988765 3656666554
No 343
>PRK02496 adk adenylate kinase; Provisional
Probab=97.01 E-value=0.00065 Score=63.35 Aligned_cols=30 Identities=27% Similarity=0.277 Sum_probs=26.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEEe
Q 012383 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~elg~~~i~v 180 (465)
-++|.||||+|||++|+.+|..+|+..+.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 478999999999999999999998766553
No 344
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.01 E-value=0.0015 Score=66.38 Aligned_cols=69 Identities=13% Similarity=0.242 Sum_probs=43.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHhC-----CceEEec-ccccc-------cCCCCChHHHHHHHHHHHHHHHHhCCceE
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKMG-----INPIMMS-AGELE-------SGNAGEPAKLIRQRYREAADIIKKGKMCC 215 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~elg-----~~~i~vs-~s~L~-------s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~I 215 (465)
.+++++.||+|+|||+++++++..+. ..++.+. ..++. .-..++....+.++++.+ -+..|..
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~a----LR~~pD~ 207 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKAT----LRLRPDR 207 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHH----hcCCCCE
Confidence 46899999999999999999998862 2233322 11211 001111111233444444 6788999
Q ss_pred EEeccc
Q 012383 216 LMINDL 221 (465)
Q Consensus 216 LfIDEI 221 (465)
|++.|+
T Consensus 208 iivGEi 213 (299)
T TIGR02782 208 IIVGEV 213 (299)
T ss_pred EEEecc
Confidence 999999
No 345
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.00 E-value=0.0016 Score=66.38 Aligned_cols=57 Identities=18% Similarity=0.244 Sum_probs=44.0
Q ss_pred CchhHHHHHHHHHHHhhhh-CCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEec
Q 012383 124 IAPAFMDKLVVHITKNFMS-LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 181 (465)
Q Consensus 124 i~~~~~d~~~~~i~k~~l~-~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs 181 (465)
++|+-. +.+..+++.++. ...+.++..|+|.|+||||||++++.+|..+|++|+.+.
T Consensus 108 l~~~~~-~~~~~~l~~~~~~~~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 108 ASPAQL-ARVRDALSGMLGAGRRAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred CCHHHH-HHHHHHHHHHHhhhhhccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 445433 345666666553 456677889999999999999999999999999999544
No 346
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.99 E-value=0.0012 Score=60.35 Aligned_cols=47 Identities=15% Similarity=0.248 Sum_probs=27.6
Q ss_pred hhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCc---eEEeccccc
Q 012383 139 NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN---PIMMSAGEL 185 (465)
Q Consensus 139 ~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~---~i~vs~s~L 185 (465)
.++.......++.++|+|++|+|||++.+++...+... ++.+.....
T Consensus 14 ~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 14 DLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp HTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred HHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 33333344557899999999999999999888876443 555555433
No 347
>PRK14528 adenylate kinase; Provisional
Probab=96.96 E-value=0.00084 Score=63.31 Aligned_cols=30 Identities=23% Similarity=0.371 Sum_probs=26.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEEe
Q 012383 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~elg~~~i~v 180 (465)
-+++.||||+|||++|+.+|+.+|++.+.+
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 588999999999999999999999876553
No 348
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.95 E-value=0.00074 Score=64.60 Aligned_cols=28 Identities=32% Similarity=0.453 Sum_probs=25.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCceEE
Q 012383 152 LGIWGGKGQGKSFQCELVFAKMGINPIM 179 (465)
Q Consensus 152 lLL~GPPGtGKT~LAraIA~elg~~~i~ 179 (465)
|+|.||||+|||++|+.+|..+|+..+.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is 29 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIS 29 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeee
Confidence 7899999999999999999999876555
No 349
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.95 E-value=0.0071 Score=57.46 Aligned_cols=23 Identities=26% Similarity=0.031 Sum_probs=20.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHH
Q 012383 149 PLILGIWGGKGQGKSFQCELVFA 171 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~ 171 (465)
..-++|.||.|+|||++.++|+.
T Consensus 29 ~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 29 GRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred CeEEEEECCCCCccHHHHHHHHH
Confidence 35799999999999999999993
No 350
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.95 E-value=0.0032 Score=59.75 Aligned_cols=44 Identities=23% Similarity=0.332 Sum_probs=34.0
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHh-CCceEEecccccccCC
Q 012383 146 IKVPLILGIWGGKGQGKSFQCELVFAKM-GINPIMMSAGELESGN 189 (465)
Q Consensus 146 ~~~p~glLL~GPPGtGKT~LAraIA~el-g~~~i~vs~s~L~s~~ 189 (465)
...|..+++.|+||+|||++++.+..++ +-.++.+++.++....
T Consensus 12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~ 56 (199)
T PF06414_consen 12 QEKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFH 56 (199)
T ss_dssp -SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGS
T ss_pred ccCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhc
Confidence 3679999999999999999999999998 7788899988775443
No 351
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.95 E-value=0.00092 Score=61.41 Aligned_cols=31 Identities=19% Similarity=0.184 Sum_probs=28.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEEec
Q 012383 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMMS 181 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~elg~~~i~vs 181 (465)
.++|.|+||||||++++.+|+.+|++++..+
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 5788999999999999999999999987654
No 352
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=96.94 E-value=0.00091 Score=56.74 Aligned_cols=25 Identities=16% Similarity=0.119 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhC
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKMG 174 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~elg 174 (465)
++++++||+|+|||+++-..+.++.
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~ 25 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELL 25 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHH
Confidence 3689999999999999998887753
No 353
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.93 E-value=0.0025 Score=64.07 Aligned_cols=73 Identities=15% Similarity=0.182 Sum_probs=43.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh---CCceEEecccccc-c--CC-CCChHHHHHHHHHHHHHHHHhCCceEEEeccccc
Q 012383 151 ILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELE-S--GN-AGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA 223 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~s~L~-s--~~-~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDa 223 (465)
-|+|+|-||+|||++|+.|+..+ +..++.++...+. . .| -...++.+|..+..+.+..- .+..|||+|+.--
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~l-s~~~iVI~Dd~nY 81 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERAL-SKDTIVILDDNNY 81 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHH-TT-SEEEE-S---
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhh-ccCeEEEEeCCch
Confidence 37899999999999999999874 5677777755543 1 22 23457888888777644333 3347999999754
Q ss_pred c
Q 012383 224 G 224 (465)
Q Consensus 224 i 224 (465)
+
T Consensus 82 i 82 (270)
T PF08433_consen 82 I 82 (270)
T ss_dssp S
T ss_pred H
Confidence 4
No 354
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.93 E-value=0.004 Score=63.82 Aligned_cols=83 Identities=10% Similarity=-0.023 Sum_probs=50.1
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHHHHh---------CCceEEecccccc---------cCCCC--------------
Q 012383 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---------GINPIMMSAGELE---------SGNAG-------------- 191 (465)
Q Consensus 144 ~~~~~p~glLL~GPPGtGKT~LAraIA~el---------g~~~i~vs~s~L~---------s~~~G-------------- 191 (465)
.|+..-...+|+||||+|||.+|..+|-.. +-..++++..+-+ ..+--
T Consensus 91 GGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~g~d~~~~l~~i~~~~~ 170 (313)
T TIGR02238 91 GGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERFGVDPDAVLDNILYARA 170 (313)
T ss_pred CCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHcCCChHHhcCcEEEecC
Confidence 477777899999999999999998776431 3455666543310 00000
Q ss_pred -ChHHHHHHHHHHHHHHHHhCCceEEEecccccccCC
Q 012383 192 -EPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGR 227 (465)
Q Consensus 192 -e~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~ 227 (465)
..+.. .+++......+....+.+|+||-|-++...
T Consensus 171 ~~~e~~-~~~l~~l~~~i~~~~~~LvVIDSisal~r~ 206 (313)
T TIGR02238 171 YTSEHQ-MELLDYLAAKFSEEPFRLLIVDSIMALFRV 206 (313)
T ss_pred CCHHHH-HHHHHHHHHHhhccCCCEEEEEcchHhhhh
Confidence 01111 122233333345667899999999877543
No 355
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.92 E-value=0.00089 Score=64.29 Aligned_cols=28 Identities=36% Similarity=0.498 Sum_probs=25.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCceEE
Q 012383 152 LGIWGGKGQGKSFQCELVFAKMGINPIM 179 (465)
Q Consensus 152 lLL~GPPGtGKT~LAraIA~elg~~~i~ 179 (465)
|+++||||+|||++|+.+|..+|+..+.
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~~~~is 30 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPHIS 30 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEE
Confidence 8899999999999999999999876555
No 356
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.92 E-value=0.007 Score=62.89 Aligned_cols=82 Identities=10% Similarity=-0.024 Sum_probs=49.1
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHHHHh---------CCceEEeccccc---------ccCC-------C--------C
Q 012383 145 NIKVPLILGIWGGKGQGKSFQCELVFAKM---------GINPIMMSAGEL---------ESGN-------A--------G 191 (465)
Q Consensus 145 ~~~~p~glLL~GPPGtGKT~LAraIA~el---------g~~~i~vs~s~L---------~s~~-------~--------G 191 (465)
|+..-....|+||||||||.||..+|-.. +-..++++...- ...+ . -
T Consensus 122 Gi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~g~d~~~~l~~I~~~~~~ 201 (344)
T PLN03187 122 GIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFGMDADAVLDNIIYARAY 201 (344)
T ss_pred CCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHcCCChhhhcCeEEEecCC
Confidence 67777888999999999999999876432 235555554321 0000 0 0
Q ss_pred ChHHHHHHHHHHHHHHHHhCCceEEEecccccccCC
Q 012383 192 EPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGR 227 (465)
Q Consensus 192 e~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~ 227 (465)
..+.. ..++......+....+.+|+||-|-++...
T Consensus 202 ~~e~~-~~~l~~l~~~i~~~~~~LvVIDSital~r~ 236 (344)
T PLN03187 202 TYEHQ-YNLLLGLAAKMAEEPFRLLIVDSVIALFRV 236 (344)
T ss_pred CHHHH-HHHHHHHHHHHHhcCCCEEEEeCcHHhhhc
Confidence 11111 122233333445667899999999877543
No 357
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.92 E-value=0.002 Score=66.70 Aligned_cols=68 Identities=15% Similarity=0.160 Sum_probs=41.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhCC----ceEEec-ccccc---------cCCCCChHHHHHHHHHHHHHHHHhCCceE
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKMGI----NPIMMS-AGELE---------SGNAGEPAKLIRQRYREAADIIKKGKMCC 215 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~elg~----~~i~vs-~s~L~---------s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~I 215 (465)
..+|+.||+|+|||++.+++...+.- +++.+. ..++. ...+|..... |..+...+-...|.+
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~----~~~~l~~~lr~~pd~ 198 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLS----FANALRAALREDPDV 198 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcC----HHHHHHHhhccCCCE
Confidence 56889999999999999999987642 233321 11211 1112322111 333322225778999
Q ss_pred EEeccc
Q 012383 216 LMINDL 221 (465)
Q Consensus 216 LfIDEI 221 (465)
|++||+
T Consensus 199 i~vgEi 204 (343)
T TIGR01420 199 ILIGEM 204 (343)
T ss_pred EEEeCC
Confidence 999999
No 358
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.90 E-value=0.002 Score=63.42 Aligned_cols=72 Identities=15% Similarity=0.110 Sum_probs=44.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhC--------CceEEec-ccccccCCCCChHHHHHHHHHH------H---HHHHHhC
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKMG--------INPIMMS-AGELESGNAGEPAKLIRQRYRE------A---ADIIKKG 211 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~elg--------~~~i~vs-~s~L~s~~~Ge~~k~Ir~~F~~------A---~~~i~~~ 211 (465)
...||.||||||||++.|-||.-+. ..+..++ .+++.....|-+.--+-...+- + ...++..
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm 217 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSM 217 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHhc
Confidence 4578999999999999999888742 2233333 3444444444432211111111 1 1345688
Q ss_pred CceEEEeccc
Q 012383 212 KMCCLMINDL 221 (465)
Q Consensus 212 ~p~ILfIDEI 221 (465)
.|-||++|||
T Consensus 218 ~PEViIvDEI 227 (308)
T COG3854 218 SPEVIIVDEI 227 (308)
T ss_pred CCcEEEEecc
Confidence 9999999999
No 359
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.89 E-value=0.01 Score=55.81 Aligned_cols=19 Identities=32% Similarity=0.050 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q 012383 152 LGIWGGKGQGKSFQCELVF 170 (465)
Q Consensus 152 lLL~GPPGtGKT~LAraIA 170 (465)
++|+||.|.|||++.+.|+
T Consensus 2 ~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 6899999999999999998
No 360
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.88 E-value=0.00085 Score=62.50 Aligned_cols=28 Identities=21% Similarity=0.347 Sum_probs=25.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCceEE
Q 012383 152 LGIWGGKGQGKSFQCELVFAKMGINPIM 179 (465)
Q Consensus 152 lLL~GPPGtGKT~LAraIA~elg~~~i~ 179 (465)
|-+.||||||||++|+.+|..+|++++.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 5688999999999999999999998775
No 361
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.88 E-value=0.0052 Score=56.96 Aligned_cols=41 Identities=20% Similarity=0.367 Sum_probs=34.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEecccccccCC
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGN 189 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~s~L~s~~ 189 (465)
|..|.|+|.||+|||++|+++.+.+ |.+.+.+++..+...+
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l 45 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGL 45 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhcc
Confidence 5678999999999999999999985 7899999998887554
No 362
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.87 E-value=0.0048 Score=58.22 Aligned_cols=27 Identities=26% Similarity=0.327 Sum_probs=23.0
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHH
Q 012383 146 IKVPLILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 146 ~~~p~glLL~GPPGtGKT~LAraIA~e 172 (465)
+.+---++|.||+|||||+|.|+||.-
T Consensus 26 v~~Ge~iaitGPSG~GKStllk~va~L 52 (223)
T COG4619 26 VRAGEFIAITGPSGCGKSTLLKIVASL 52 (223)
T ss_pred ecCCceEEEeCCCCccHHHHHHHHHhc
Confidence 344457899999999999999999986
No 363
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.87 E-value=0.0032 Score=49.86 Aligned_cols=37 Identities=24% Similarity=0.427 Sum_probs=27.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh-CCceEEecccccccC
Q 012383 152 LGIWGGKGQGKSFQCELVFAKM-GINPIMMSAGELESG 188 (465)
Q Consensus 152 lLL~GPPGtGKT~LAraIA~el-g~~~i~vs~s~L~s~ 188 (465)
+.+.|+||+|||++++++++.+ +.++..++..-+.+.
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~~~~I~eg 39 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQLGGRSVVVLDEIVILEG 39 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCEEEEeEEEEecc
Confidence 5788999999999999999996 345555555444433
No 364
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=96.86 E-value=0.0039 Score=59.85 Aligned_cols=30 Identities=27% Similarity=0.242 Sum_probs=27.4
Q ss_pred CCCCCCCeEEEEEcCCCCcHHHHHHHHHHH
Q 012383 143 LPNIKVPLILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 143 ~~~~~~p~glLL~GPPGtGKT~LAraIA~e 172 (465)
.||.+....++|.|+-|+|||++.+.++.+
T Consensus 46 ~pg~k~d~~lvl~G~QG~GKStf~~~L~~~ 75 (198)
T PF05272_consen 46 EPGCKNDTVLVLVGKQGIGKSTFFRKLGPE 75 (198)
T ss_pred CCCCcCceeeeEecCCcccHHHHHHHHhHH
Confidence 678888899999999999999999999766
No 365
>PF13245 AAA_19: Part of AAA domain
Probab=96.85 E-value=0.0017 Score=52.77 Aligned_cols=34 Identities=15% Similarity=0.280 Sum_probs=23.0
Q ss_pred eEEEEEcCCCCcHH-HHHHHHHHHh------CCceEEeccc
Q 012383 150 LILGIWGGKGQGKS-FQCELVFAKM------GINPIMMSAG 183 (465)
Q Consensus 150 ~glLL~GPPGtGKT-~LAraIA~el------g~~~i~vs~s 183 (465)
..+++.|||||||| ++++.++... +..++.++..
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t 51 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPT 51 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCC
Confidence 34667999999999 5555666555 4455665544
No 366
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.84 E-value=0.0021 Score=70.65 Aligned_cols=34 Identities=29% Similarity=0.233 Sum_probs=27.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHhCC-ceEEecc
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKMGI-NPIMMSA 182 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~elg~-~~i~vs~ 182 (465)
.+.++|.||||+|||+||++||+.+.. +++.+.+
T Consensus 103 ~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 103 KQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred CceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 469999999999999999999999764 4444555
No 367
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.84 E-value=0.0009 Score=62.85 Aligned_cols=30 Identities=30% Similarity=0.602 Sum_probs=27.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEEec
Q 012383 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMMS 181 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~elg~~~i~vs 181 (465)
-++++|.||||||++|+.++ ++|...+.++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 47899999999999999999 9999888766
No 368
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.84 E-value=0.0013 Score=61.35 Aligned_cols=34 Identities=15% Similarity=0.058 Sum_probs=30.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecc
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 182 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~ 182 (465)
+..|+|.||+|+|||++++.+|+.++++++..+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 4569999999999999999999999999887654
No 369
>PRK01184 hypothetical protein; Provisional
Probab=96.83 E-value=0.0012 Score=61.41 Aligned_cols=30 Identities=33% Similarity=0.542 Sum_probs=25.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhCCceEEe
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~elg~~~i~v 180 (465)
+.|+|.||||+|||++++ +++++|++++..
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 468999999999999998 788999877664
No 370
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.83 E-value=0.0039 Score=58.64 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHh
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~el 173 (465)
....++|.||+|+|||++.++++...
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 35689999999999999999999875
No 371
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.82 E-value=0.0054 Score=56.43 Aligned_cols=29 Identities=17% Similarity=0.296 Sum_probs=24.6
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHHHHh
Q 012383 145 NIKVPLILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 145 ~~~~p~glLL~GPPGtGKT~LAraIA~el 173 (465)
.+++...+.|.||+|+|||+|.+.|+...
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 22 SVRRGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34555689999999999999999999774
No 372
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=96.81 E-value=0.0009 Score=74.73 Aligned_cols=137 Identities=20% Similarity=0.249 Sum_probs=75.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCChHHHHHHHH-H----HHHHHHHhCCceEEEecccccc
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRY-R----EAADIIKKGKMCCLMINDLDAG 224 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge~~k~Ir~~F-~----~A~~~i~~~~p~ILfIDEIDai 224 (465)
-.|||.|.||||||.|.+.+++-+-..++..--+ +.-+|-+...+++.+ . +| ..+--..+.|+.|||+|++
T Consensus 320 InILLvGDPgtaKSqlLk~v~~~aPr~vytsgkg---ss~~GLTAav~rd~~tge~~Lea-GALVlAD~Gv~cIDEfdKm 395 (682)
T COG1241 320 IHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKG---SSAAGLTAAVVRDKVTGEWVLEA-GALVLADGGVCCIDEFDKM 395 (682)
T ss_pred eeEEEcCCCchhHHHHHHHHHhhCCceEEEcccc---ccccCceeEEEEccCCCeEEEeC-CEEEEecCCEEEEEeccCC
Confidence 5799999999999999999998865544431100 111122222222221 0 11 1112345789999999986
Q ss_pred cCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCc-cccCCCCCceEEEEeCCCC-------------CCChhhhcCCC
Q 012383 225 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGM-YNKEENPRVPIIVTGNDFS-------------TLYAPLIRDGR 290 (465)
Q Consensus 225 ~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~-~~~~~~~~V~VI~TTN~~~-------------~LD~ALlR~GR 290 (465)
-... .......|-++++ .+..- ....-+.+.-|++++|-.. .|+++|+. |
T Consensus 396 ~~~d----r~aihEaMEQQtI----------sIaKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLS--R 459 (682)
T COG1241 396 NEED----RVAIHEAMEQQTI----------SIAKAGITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLS--R 459 (682)
T ss_pred ChHH----HHHHHHHHHhcEe----------eecccceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHh--h
Confidence 4321 1111122222222 11111 0112236677888888654 68899997 9
Q ss_pred ceEEEe---CCCHHHHHHH
Q 012383 291 MEKFYW---APTREDRIGV 306 (465)
Q Consensus 291 fd~~i~---~P~~e~R~~I 306 (465)
||..+. .|+++.=..|
T Consensus 460 FDLifvl~D~~d~~~D~~i 478 (682)
T COG1241 460 FDLIFVLKDDPDEEKDEEI 478 (682)
T ss_pred CCeeEEecCCCCccchHHH
Confidence 999888 6766544444
No 373
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.81 E-value=0.011 Score=56.07 Aligned_cols=21 Identities=24% Similarity=0.221 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 012383 150 LILGIWGGKGQGKSFQCELVF 170 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA 170 (465)
+.++|.||.|+|||++.+.|+
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 579999999999999999988
No 374
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.80 E-value=0.0067 Score=55.05 Aligned_cols=28 Identities=25% Similarity=0.297 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHhC
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKMG 174 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~elg 174 (465)
.+...++|.||+|+|||+|.++|+..+.
T Consensus 23 ~~g~~~~i~G~nGsGKStll~~l~g~~~ 50 (157)
T cd00267 23 KAGEIVALVGPNGSGKSTLLRAIAGLLK 50 (157)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4446899999999999999999998753
No 375
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.79 E-value=0.001 Score=60.11 Aligned_cols=31 Identities=32% Similarity=0.568 Sum_probs=25.5
Q ss_pred EEcCCCCcHHHHHHHHHHHhCCceEEecccccc
Q 012383 154 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 186 (465)
Q Consensus 154 L~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~ 186 (465)
|.||||+|||++|+.||++.|+ ..++.++++
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~--~~is~~~ll 31 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGL--VHISVGDLL 31 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTS--EEEEHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCc--ceechHHHH
Confidence 5799999999999999999975 555655554
No 376
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.79 E-value=0.001 Score=62.71 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=17.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 012383 151 ILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~el 173 (465)
..+++||||||||+++..++..+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 58999999999997777666665
No 377
>PRK04182 cytidylate kinase; Provisional
Probab=96.77 E-value=0.0014 Score=60.06 Aligned_cols=29 Identities=31% Similarity=0.534 Sum_probs=26.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEE
Q 012383 151 ILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~elg~~~i~ 179 (465)
.|+|.|+||||||++++.+|+.+|++++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 58899999999999999999999998776
No 378
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.77 E-value=0.0057 Score=56.31 Aligned_cols=33 Identities=18% Similarity=0.318 Sum_probs=26.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh---CCceEEeccc
Q 012383 151 ILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG 183 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~s 183 (465)
.+++.||||+|||+++..+|..+ |..+..++..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 47889999999999999988874 5666665544
No 379
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=96.77 E-value=0.001 Score=64.26 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~el 173 (465)
.+|||+||||||||++|+++..-+
T Consensus 23 h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 23 HHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp --EEEES-CCCTHHHHHHHHHHCS
T ss_pred CCeEEECCCCCCHHHHHHHHHHhC
Confidence 699999999999999999998764
No 380
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.76 E-value=0.0019 Score=67.71 Aligned_cols=28 Identities=18% Similarity=0.281 Sum_probs=24.0
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHh
Q 012383 146 IKVPLILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 146 ~~~p~glLL~GPPGtGKT~LAraIA~el 173 (465)
+.....++|.||+|+|||+++..+|..+
T Consensus 134 ~~~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 134 MERGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3446789999999999999999999863
No 381
>PLN02674 adenylate kinase
Probab=96.75 E-value=0.0015 Score=64.72 Aligned_cols=38 Identities=21% Similarity=0.291 Sum_probs=30.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccc
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 186 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~ 186 (465)
+++..|+|.||||+|||++|+.+|+.+|+. .++.++++
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~~~--his~Gdll 66 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKDEYCLC--HLATGDML 66 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHcCCc--EEchhHHH
Confidence 345678999999999999999999999864 44555443
No 382
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.74 E-value=0.0013 Score=56.57 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 012383 152 LGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 152 lLL~GPPGtGKT~LAraIA~el 173 (465)
|+|.|+||+|||++|+.+++++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999997
No 383
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.74 E-value=0.006 Score=56.41 Aligned_cols=40 Identities=23% Similarity=0.365 Sum_probs=30.7
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHhCC---ceEEeccccc
Q 012383 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGI---NPIMMSAGEL 185 (465)
Q Consensus 146 ~~~p~glLL~GPPGtGKT~LAraIA~elg~---~~i~vs~s~L 185 (465)
...|.-|+|.|+||+|||++++.++..+.. ..+.+++..+
T Consensus 4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~ 46 (176)
T PRK05541 4 KPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDEL 46 (176)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHH
Confidence 356788999999999999999999999852 3445554333
No 384
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.73 E-value=0.0066 Score=65.92 Aligned_cols=82 Identities=10% Similarity=0.047 Sum_probs=52.7
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHHHH-h---CCceEEecccccccC-------------------C-------CCC-
Q 012383 144 PNIKVPLILGIWGGKGQGKSFQCELVFAK-M---GINPIMMSAGELESG-------------------N-------AGE- 192 (465)
Q Consensus 144 ~~~~~p~glLL~GPPGtGKT~LAraIA~e-l---g~~~i~vs~s~L~s~-------------------~-------~Ge- 192 (465)
.|+++...+||+|+||+|||.++..++.+ + |-+.++++..+-... . ...
T Consensus 26 GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~~~~~~~g~l~~~~~~~~~~ 105 (509)
T PRK09302 26 GGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIRNVASFGWDLQKLIDEGKLFILDASPDPS 105 (509)
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHcCCCHHHHhhCCeEEEEecCcccc
Confidence 37777889999999999999999977654 2 555555543321100 0 000
Q ss_pred -----hHHHHHHHHHHHHHHHHhCCceEEEeccccccc
Q 012383 193 -----PAKLIRQRYREAADIIKKGKMCCLMINDLDAGA 225 (465)
Q Consensus 193 -----~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~ 225 (465)
....+..++.+..+.+...++..|+||-+..+.
T Consensus 106 ~~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~ 143 (509)
T PRK09302 106 EQEEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEALF 143 (509)
T ss_pred cccccccccHHHHHHHHHHHHHhhCCCEEEECCHHHHH
Confidence 011234455555556677889999999997764
No 385
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=96.73 E-value=0.0089 Score=66.23 Aligned_cols=129 Identities=11% Similarity=0.012 Sum_probs=73.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhCC--ceEEecccccccCCCCChHHHHHHHHHHH-----HHHHHhCCceEEEecccc
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAGELESGNAGEPAKLIRQRYREA-----ADIIKKGKMCCLMINDLD 222 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~elg~--~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A-----~~~i~~~~p~ILfIDEID 222 (465)
.||||-|++||+||+++++++.-+.. +|+.+..+.-.+..+|.. -|......- -.++......|||+||+.
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~--Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n 103 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGL--DLAATLRAGRPVAQRGLLAEADGGVLVLAMAE 103 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCc--hHHhHhhcCCcCCCCCceeeccCCEEEecCcc
Confidence 58999999999999999999998754 777766555455555532 011111110 001112234699999995
Q ss_pred cccCCCCCCcccchhhHHHHHHHHHhhcCC-ccccCCCccccCCCCCceEEEEeCCC---CCCChhhhcCCCceEEEe
Q 012383 223 AGAGRMGGTTQYTVNNQMVNATLMNIADNP-TCVQLPGMYNKEENPRVPIIVTGNDF---STLYAPLIRDGRMEKFYW 296 (465)
Q Consensus 223 ai~~~r~~~~~~~v~~~~v~~~Ll~llD~~-~~v~l~g~~~~~~~~~V~VI~TTN~~---~~LD~ALlR~GRfd~~i~ 296 (465)
.+- .-+...|++-++.- ..|+-+|.. .....+..+|+|-|.. ..|+++|+- ||+..+.
T Consensus 104 ~~~-------------~~~~~aLleame~G~vtIeR~G~s-~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~ 165 (584)
T PRK13406 104 RLE-------------PGTAARLAAALDTGEVRLERDGLA-LRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLD 165 (584)
T ss_pred cCC-------------HHHHHHHHHHHhCCcEEEEECCcE-EecCCCcEEEecCCChhcccCCCHHhHh--heEEEEE
Confidence 322 22333454555421 111112221 1122455677763322 358999984 9999998
No 386
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.71 E-value=0.0053 Score=63.97 Aligned_cols=39 Identities=18% Similarity=0.255 Sum_probs=29.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHhCC---ceEEeccccc
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKMGI---NPIMMSAGEL 185 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~elg~---~~i~vs~s~L 185 (465)
..|..+.|.||.|||||++.++|...+.. .++.+....+
T Consensus 20 ~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~ 61 (364)
T PF05970_consen 20 EEGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGI 61 (364)
T ss_pred cCCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHH
Confidence 45788999999999999999999888743 3444443333
No 387
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.71 E-value=0.0033 Score=64.65 Aligned_cols=71 Identities=18% Similarity=0.175 Sum_probs=45.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCC-Ch----H---HHHHHHHHHHHHHHHhCCceEEEecc
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAG-EP----A---KLIRQRYREAADIIKKGKMCCLMIND 220 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~G-e~----~---k~Ir~~F~~A~~~i~~~~p~ILfIDE 220 (465)
.+.++|.|+||||||+|++.++...+.+++.-.+-+......+ +. + ..+...+... +........|||+|-
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R~~~~~~~~~~~~l~~~d~~~i~~g~~~~~-~~~~~~a~~iif~D~ 240 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFNTTSAWEYAREYVEEKLGGDEALQYSDYAQIALGQQRYI-DYAVRHAHKIAFIDT 240 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhHHHHHHhcCCCcccCHHHHHHHHHHHHHHH-HHHHhhcCCeEEEcC
Confidence 3578999999999999999999999998876554444332221 11 1 2233323221 111244567999994
No 388
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.71 E-value=0.01 Score=55.95 Aligned_cols=73 Identities=14% Similarity=0.266 Sum_probs=48.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH---hCCceEEe---cc----ccccc---------------CCCC----ChHHHHHHHH
Q 012383 151 ILGIWGGKGQGKSFQCELVFAK---MGINPIMM---SA----GELES---------------GNAG----EPAKLIRQRY 201 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~e---lg~~~i~v---s~----s~L~s---------------~~~G----e~~k~Ir~~F 201 (465)
-|.+|+++|.|||+.|-.+|-. .|..++.+ ++ ++... .|.. +..+..++.+
T Consensus 7 li~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~ 86 (173)
T TIGR00708 7 IIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAKAAW 86 (173)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHHHHH
Confidence 4668899999999999988776 35555432 22 22100 0111 1124567778
Q ss_pred HHHHHHHHhCCceEEEeccccc
Q 012383 202 REAADIIKKGKMCCLMINDLDA 223 (465)
Q Consensus 202 ~~A~~~i~~~~p~ILfIDEIDa 223 (465)
..|.+.+......+|++|||-.
T Consensus 87 ~~a~~~l~~~~~DlvVLDEi~~ 108 (173)
T TIGR00708 87 QHAKEMLADPELDLVLLDELTY 108 (173)
T ss_pred HHHHHHHhcCCCCEEEehhhHH
Confidence 8887777788899999999843
No 389
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.68 E-value=0.002 Score=58.13 Aligned_cols=30 Identities=20% Similarity=0.334 Sum_probs=26.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHhCCc
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKMGIN 176 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~elg~~ 176 (465)
++...++|.|+.|+|||++++.+++.+|..
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 445689999999999999999999999875
No 390
>PRK14526 adenylate kinase; Provisional
Probab=96.66 E-value=0.0018 Score=62.74 Aligned_cols=33 Identities=24% Similarity=0.379 Sum_probs=26.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCceEEecccccc
Q 012383 152 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 186 (465)
Q Consensus 152 lLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~ 186 (465)
++|+||||+|||++++.+|..+++.. ++.++++
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~~~~--is~G~ll 35 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELNYYH--ISTGDLF 35 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCce--eecChHH
Confidence 78999999999999999999988655 4444443
No 391
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=96.66 E-value=0.01 Score=56.74 Aligned_cols=74 Identities=16% Similarity=0.171 Sum_probs=49.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH---hCCceEE---eccc----cc--cc--------------CCCC----ChHHHHHH
Q 012383 150 LILGIWGGKGQGKSFQCELVFAK---MGINPIM---MSAG----EL--ES--------------GNAG----EPAKLIRQ 199 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~e---lg~~~i~---vs~s----~L--~s--------------~~~G----e~~k~Ir~ 199 (465)
-.|++||++|.|||+.|-.+|-. .|..+.. +++. ++ +. .|.. +.....+.
T Consensus 23 g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~~~~ 102 (191)
T PRK05986 23 GLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAAARE 102 (191)
T ss_pred CeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHHHHH
Confidence 46889999999999999988877 2444333 2221 11 00 0111 11345667
Q ss_pred HHHHHHHHHHhCCceEEEeccccc
Q 012383 200 RYREAADIIKKGKMCCLMINDLDA 223 (465)
Q Consensus 200 ~F~~A~~~i~~~~p~ILfIDEIDa 223 (465)
.|..|.+.+......+|++|||-.
T Consensus 103 ~~~~a~~~l~~~~ydlvVLDEi~~ 126 (191)
T PRK05986 103 GWEEAKRMLADESYDLVVLDELTY 126 (191)
T ss_pred HHHHHHHHHhCCCCCEEEEehhhH
Confidence 788888888888899999999843
No 392
>PRK04328 hypothetical protein; Provisional
Probab=96.65 E-value=0.003 Score=62.33 Aligned_cols=38 Identities=24% Similarity=0.324 Sum_probs=28.9
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHHHH---hCCceEEec
Q 012383 144 PNIKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMS 181 (465)
Q Consensus 144 ~~~~~p~glLL~GPPGtGKT~LAraIA~e---lg~~~i~vs 181 (465)
.|+++...+|++||||||||.|+..++.+ .|.+.++++
T Consensus 18 GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis 58 (249)
T PRK04328 18 GGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA 58 (249)
T ss_pred CCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 36777789999999999999999876654 344555544
No 393
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.65 E-value=0.0018 Score=58.91 Aligned_cols=30 Identities=27% Similarity=0.432 Sum_probs=26.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEEe
Q 012383 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~elg~~~i~v 180 (465)
.|.|+|+||+|||++|+.+++.+|++++..
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg~~~~~~ 31 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLKLISA 31 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCceecH
Confidence 488999999999999999999999886653
No 394
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.64 E-value=0.052 Score=57.45 Aligned_cols=79 Identities=13% Similarity=0.214 Sum_probs=48.2
Q ss_pred hhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEe
Q 012383 139 NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMI 218 (465)
Q Consensus 139 ~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfI 218 (465)
.+.......++ .++|+||-+||||++.+.+.+...-..+.++..++...... +.+.+..-.++ .......|||
T Consensus 28 ~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~-----l~d~~~~~~~~-~~~~~~yifL 100 (398)
T COG1373 28 RLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIE-----LLDLLRAYIEL-KEREKSYIFL 100 (398)
T ss_pred HHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhh-----HHHHHHHHHHh-hccCCceEEE
Confidence 33333444545 89999999999999998888876555666666555432211 12222221111 2225579999
Q ss_pred cccccc
Q 012383 219 NDLDAG 224 (465)
Q Consensus 219 DEIDai 224 (465)
|||...
T Consensus 101 DEIq~v 106 (398)
T COG1373 101 DEIQNV 106 (398)
T ss_pred ecccCc
Confidence 999653
No 395
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.64 E-value=0.0021 Score=61.61 Aligned_cols=30 Identities=23% Similarity=0.166 Sum_probs=27.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHhCCceE
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKMGINPI 178 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~elg~~~i 178 (465)
|+.+++.|+||+|||++|+.+|.++|+..+
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~~~~~ 32 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRAIDIV 32 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCeEE
Confidence 678999999999999999999999987653
No 396
>PTZ00035 Rad51 protein; Provisional
Probab=96.64 E-value=0.012 Score=61.02 Aligned_cols=29 Identities=21% Similarity=0.335 Sum_probs=25.4
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHHHH
Q 012383 144 PNIKVPLILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 144 ~~~~~p~glLL~GPPGtGKT~LAraIA~e 172 (465)
.|+.....+.|+||||||||.++..++..
T Consensus 113 GGi~~G~iteI~G~~GsGKT~l~~~l~~~ 141 (337)
T PTZ00035 113 GGIETGSITELFGEFRTGKTQLCHTLCVT 141 (337)
T ss_pred CCCCCCeEEEEECCCCCchhHHHHHHHHH
Confidence 47787888999999999999999988754
No 397
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.0049 Score=70.64 Aligned_cols=137 Identities=18% Similarity=0.144 Sum_probs=92.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh----------CCceEEecccccc--cCCCCChHHHHHHHHHHHHHHHH-hCCceEE
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIK-KGKMCCL 216 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~el----------g~~~i~vs~s~L~--s~~~Ge~~k~Ir~~F~~A~~~i~-~~~p~IL 216 (465)
+.-+|.|.||.|||.+++-+|+.. +..++.++.+.+. .++-|+-+..++.+.+++ . .+...||
T Consensus 209 ~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v----~~~~~gvIL 284 (898)
T KOG1051|consen 209 NNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKEV----ESGGGGVIL 284 (898)
T ss_pred CCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHHHHHHHH----hcCCCcEEE
Confidence 566889999999999999999883 3345566665554 345677788888888877 5 5577899
Q ss_pred EecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCC-----CCCCChhhhcCCCc
Q 012383 217 MINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND-----FSTLYAPLIRDGRM 291 (465)
Q Consensus 217 fIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~-----~~~LD~ALlR~GRf 291 (465)
||||+.-+.+.... +. ....++ .|--+ ..+.++-+|+||-. .-.-||+|-| ||
T Consensus 285 figelh~lvg~g~~---~~-~~d~~n-lLkp~---------------L~rg~l~~IGatT~e~Y~k~iekdPalEr--rw 342 (898)
T KOG1051|consen 285 FLGELHWLVGSGSN---YG-AIDAAN-LLKPL---------------LARGGLWCIGATTLETYRKCIEKDPALER--RW 342 (898)
T ss_pred EecceeeeecCCCc---ch-HHHHHH-hhHHH---------------HhcCCeEEEecccHHHHHHHHhhCcchhh--Cc
Confidence 99999998876531 11 111111 11111 12344788886652 2245999998 99
Q ss_pred eEEEe-CCCHHHHHHHHHHhcc
Q 012383 292 EKFYW-APTREDRIGVCKGIFR 312 (465)
Q Consensus 292 d~~i~-~P~~e~R~~Il~~~l~ 312 (465)
+.+.- .|+.++-..|++....
T Consensus 343 ~l~~v~~pS~~~~~~iL~~l~~ 364 (898)
T KOG1051|consen 343 QLVLVPIPSVENLSLILPGLSE 364 (898)
T ss_pred ceeEeccCcccchhhhhhhhhh
Confidence 99888 9998887777665543
No 398
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.63 E-value=0.004 Score=65.33 Aligned_cols=68 Identities=13% Similarity=0.192 Sum_probs=42.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhC-----CceEEeccc-ccc-----------cCCCCChHHHHHHHHHHHHHHHHhCC
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKMG-----INPIMMSAG-ELE-----------SGNAGEPAKLIRQRYREAADIIKKGK 212 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~elg-----~~~i~vs~s-~L~-----------s~~~Ge~~k~Ir~~F~~A~~~i~~~~ 212 (465)
..+|+.||+|+|||++.+++..++. .+.+.+.-+ ++. ...+|.... -|..+...+-+..
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~----~~~~~l~~aLR~~ 225 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVD----SFANGIRLALRRA 225 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCcc----CHHHHHHHhhccC
Confidence 3578999999999999999988863 334443211 211 111232211 2444433335779
Q ss_pred ceEEEeccc
Q 012383 213 MCCLMINDL 221 (465)
Q Consensus 213 p~ILfIDEI 221 (465)
|.+|++.|+
T Consensus 226 PD~I~vGEi 234 (372)
T TIGR02525 226 PKIIGVGEI 234 (372)
T ss_pred CCEEeeCCC
Confidence 999999999
No 399
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.63 E-value=0.0033 Score=62.26 Aligned_cols=69 Identities=13% Similarity=0.132 Sum_probs=41.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHhCCc---eEEec-ccccccCCC-------CChHHHHHHHHHHHHHHHHhCCceEEE
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKMGIN---PIMMS-AGELESGNA-------GEPAKLIRQRYREAADIIKKGKMCCLM 217 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~elg~~---~i~vs-~s~L~s~~~-------Ge~~k~Ir~~F~~A~~~i~~~~p~ILf 217 (465)
...+++.||+|+|||++.+++..++.-. ++.+. ..|+.-... ........+.+..+ -+..|.+|+
T Consensus 127 ~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~~~~~~~~~~~~~~~~~~~l~~~----LR~~pD~ii 202 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPGPNQIQIQTRRDEISYEDLLKSA----LRQDPDVII 202 (270)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SCSSEEEEEEETTTBSHHHHHHHH----TTS--SEEE
T ss_pred ceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeecccceEEEEeecCcccHHHHHHHH----hcCCCCccc
Confidence 4789999999999999999999986443 23322 222211100 01111233444444 677899999
Q ss_pred eccc
Q 012383 218 INDL 221 (465)
Q Consensus 218 IDEI 221 (465)
|.||
T Consensus 203 igEi 206 (270)
T PF00437_consen 203 IGEI 206 (270)
T ss_dssp ESCE
T ss_pred cccc
Confidence 9999
No 400
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=96.62 E-value=0.011 Score=55.11 Aligned_cols=40 Identities=18% Similarity=0.277 Sum_probs=32.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEecccccc
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELE 186 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~s~L~ 186 (465)
.++..++|.|+||+|||++++.++..+ |...+.+++..+.
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r 58 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVR 58 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHH
Confidence 567899999999999999999999986 4455666665553
No 401
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.62 E-value=0.026 Score=56.88 Aligned_cols=37 Identities=22% Similarity=0.487 Sum_probs=30.2
Q ss_pred hhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCc
Q 012383 140 FMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN 176 (465)
Q Consensus 140 ~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~ 176 (465)
++.......|..|.|+|+=|+|||++.+.+-+++.-.
T Consensus 11 ~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 11 IIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred HHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 3444444789999999999999999999998887544
No 402
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=96.61 E-value=0.015 Score=56.23 Aligned_cols=22 Identities=36% Similarity=0.152 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 012383 150 LILGIWGGKGQGKSFQCELVFA 171 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~ 171 (465)
..++|.||.|+|||++.+.++.
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 6789999999999999999874
No 403
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.61 E-value=0.0089 Score=56.67 Aligned_cols=39 Identities=18% Similarity=0.303 Sum_probs=31.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEeccccc
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGEL 185 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~s~L 185 (465)
..|.-+.|.|++|+|||+++++++..+ |...+.+++..+
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~ 63 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNV 63 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeH
Confidence 457789999999999999999999986 455666766544
No 404
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=96.59 E-value=0.0033 Score=64.04 Aligned_cols=33 Identities=30% Similarity=0.419 Sum_probs=29.8
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCce
Q 012383 145 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINP 177 (465)
Q Consensus 145 ~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~ 177 (465)
+.+.|..+++.|++|||||++|..+|..+|.+.
T Consensus 88 ~~~~p~iIlI~G~sgsGKStlA~~La~~l~~~~ 120 (301)
T PRK04220 88 KSKEPIIILIGGASGVGTSTIAFELASRLGIRS 120 (301)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 446789999999999999999999999999874
No 405
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=96.59 E-value=0.0022 Score=70.38 Aligned_cols=139 Identities=20% Similarity=0.266 Sum_probs=79.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhCCceEEe----ccccc-----ccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecc
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMM----SAGEL-----ESGNAGEPAKLIRQRYREAADIIKKGKMCCLMIND 220 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~elg~~~i~v----s~s~L-----~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDE 220 (465)
..|||.|.||||||-+.+++++-+-..++.. +++.| .+.--|+. .++ | ..+--....|..|||
T Consensus 379 inv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGkaSSaAGLTaaVvkD~esgdf------~iE-A-GALmLADnGICCIDE 450 (764)
T KOG0480|consen 379 INVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGKASSAAGLTAAVVKDEESGDF------TIE-A-GALMLADNGICCIDE 450 (764)
T ss_pred ceEEEeCCCCccHHHHHHHHhccCCcceEecCcccccccceEEEEecCCCCce------eee-c-CcEEEccCceEEech
Confidence 5799999999999999999998765443331 11111 11111211 001 1 111133456889999
Q ss_pred cccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC-------------CCChhhhc
Q 012383 221 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-------------TLYAPLIR 287 (465)
Q Consensus 221 IDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~-------------~LD~ALlR 287 (465)
+|++.-+ .|......|-++++ .+.--|. ...-+.|--||+++|-.. .+.+|++.
T Consensus 451 FDKMd~~----dqvAihEAMEQQtI--------SIaKAGv-~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimS 517 (764)
T KOG0480|consen 451 FDKMDVK----DQVAIHEAMEQQTI--------SIAKAGV-VATLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMS 517 (764)
T ss_pred hcccChH----hHHHHHHHHHhhee--------hheecce-EEeecchhhhhhhcCCcCCccccccchhhhcCCCchhhh
Confidence 9987543 12223333333333 0000111 012245667899998543 57899997
Q ss_pred CCCceEEEe---CCCHHHHHHHHHHhc
Q 012383 288 DGRMEKFYW---APTREDRIGVCKGIF 311 (465)
Q Consensus 288 ~GRfd~~i~---~P~~e~R~~Il~~~l 311 (465)
|||.++. -|++..=..|-+.++
T Consensus 518 --RFDL~FiLlD~~nE~~D~~ia~hIl 542 (764)
T KOG0480|consen 518 --RFDLFFILLDDCNEVVDYAIARHIL 542 (764)
T ss_pred --hhcEEEEEecCCchHHHHHHHHHHH
Confidence 9999888 677776666655444
No 406
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.59 E-value=0.02 Score=55.10 Aligned_cols=26 Identities=19% Similarity=-0.031 Sum_probs=21.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~e 172 (465)
+....++|.||.|+|||++.+.++.-
T Consensus 27 ~~~~~~~l~G~n~~GKstll~~i~~~ 52 (204)
T cd03282 27 GSSRFHIITGPNMSGKSTYLKQIALL 52 (204)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 33467999999999999999998743
No 407
>PRK14974 cell division protein FtsY; Provisional
Probab=96.57 E-value=0.017 Score=59.85 Aligned_cols=35 Identities=17% Similarity=0.349 Sum_probs=27.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEecc
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 182 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~ 182 (465)
.|..++|.||||+|||+++..+|..+ |..+..+.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~ 176 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAG 176 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 47899999999999999888888764 555555543
No 408
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.56 E-value=0.0066 Score=62.57 Aligned_cols=69 Identities=14% Similarity=0.231 Sum_probs=43.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHhC-----CceEEec-ccccccC------CCCChHHHHHHHHHHHHHHHHhCCceEE
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKMG-----INPIMMS-AGELESG------NAGEPAKLIRQRYREAADIIKKGKMCCL 216 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~elg-----~~~i~vs-~s~L~s~------~~Ge~~k~Ir~~F~~A~~~i~~~~p~IL 216 (465)
.+++|+.|++|+|||++.+++..+.. ..++.+. ..|+.-. +.....-...++.+.+ -+..|..|
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~a----LR~~PD~I 219 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKST----MRLRPDRI 219 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHH----hCCCCCEE
Confidence 46899999999999999999998862 2333322 2232210 0011111233444444 57899999
Q ss_pred Eeccc
Q 012383 217 MINDL 221 (465)
Q Consensus 217 fIDEI 221 (465)
++.|+
T Consensus 220 ivGEi 224 (323)
T PRK13833 220 IVGEV 224 (323)
T ss_pred EEeec
Confidence 99999
No 409
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.56 E-value=0.0087 Score=57.25 Aligned_cols=33 Identities=24% Similarity=0.464 Sum_probs=25.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEec
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMS 181 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs 181 (465)
|+.++|.||+|+|||+.+--+|..+ +..+..++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis 36 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALIS 36 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeec
Confidence 7889999999999999998888774 34444444
No 410
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.54 E-value=0.041 Score=63.12 Aligned_cols=32 Identities=16% Similarity=-0.083 Sum_probs=25.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEe
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~elg~~~i~v 180 (465)
..+-++++||+|.|||+++...+...+ ++.-+
T Consensus 31 ~~~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~ 62 (903)
T PRK04841 31 NYRLVLVTSPAGYGKTTLISQWAAGKN-NLGWY 62 (903)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhCC-CeEEE
Confidence 346799999999999999999887766 44443
No 411
>PRK13764 ATPase; Provisional
Probab=96.54 E-value=0.004 Score=69.02 Aligned_cols=26 Identities=23% Similarity=0.123 Sum_probs=23.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHhC
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKMG 174 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~elg 174 (465)
.+++|+.||||+|||+++++++.++.
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~ 282 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYA 282 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 57899999999999999999998864
No 412
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.53 E-value=0.015 Score=53.49 Aligned_cols=25 Identities=24% Similarity=0.181 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHh
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~el 173 (465)
|+..++.||.|+|||.+.++++-.+
T Consensus 21 ~~~~~i~G~NgsGKS~~l~~i~~~~ 45 (162)
T cd03227 21 GSLTIITGPNGSGKSTILDAIGLAL 45 (162)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999976553
No 413
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.53 E-value=0.0086 Score=55.33 Aligned_cols=37 Identities=16% Similarity=0.182 Sum_probs=29.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEecccc
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGE 184 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~s~ 184 (465)
.+..+.|.|+||+|||++++.++..+ |..+..++...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~ 42 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDA 42 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcc
Confidence 45688999999999999999999987 44455565543
No 414
>PLN02459 probable adenylate kinase
Probab=96.53 E-value=0.0032 Score=62.97 Aligned_cols=35 Identities=23% Similarity=0.328 Sum_probs=27.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHhCCceEEeccccc
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 185 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L 185 (465)
|..++|.||||+|||++|+.+|+.+|+..+ +.+++
T Consensus 29 ~~~ii~~G~PGsGK~T~a~~la~~~~~~~i--s~gdl 63 (261)
T PLN02459 29 NVNWVFLGCPGVGKGTYASRLSKLLGVPHI--ATGDL 63 (261)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCcEE--eCcHH
Confidence 345788899999999999999999986544 44444
No 415
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.53 E-value=0.012 Score=54.31 Aligned_cols=29 Identities=31% Similarity=0.321 Sum_probs=24.8
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHHHHh
Q 012383 145 NIKVPLILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 145 ~~~~p~glLL~GPPGtGKT~LAraIA~el 173 (465)
.+++...+.|.||+|+|||+|.++|+...
T Consensus 24 ~i~~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 24 TIKPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 34455689999999999999999999885
No 416
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.53 E-value=0.0096 Score=61.10 Aligned_cols=29 Identities=24% Similarity=0.331 Sum_probs=25.3
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHHHH
Q 012383 144 PNIKVPLILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 144 ~~~~~p~glLL~GPPGtGKT~LAraIA~e 172 (465)
.|+.+-..+.++||||+|||.++..+|..
T Consensus 91 gGi~~g~i~~i~G~~g~GKT~l~~~~~~~ 119 (316)
T TIGR02239 91 GGIETGSITEIFGEFRTGKTQLCHTLAVT 119 (316)
T ss_pred CCCCCCeEEEEECCCCCCcCHHHHHHHHH
Confidence 47777889999999999999999988753
No 417
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=96.52 E-value=0.00093 Score=63.95 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 012383 152 LGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 152 lLL~GPPGtGKT~LAraIA~el 173 (465)
++++|+||+|||++.+.++...
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 4789999999999999999986
No 418
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=96.50 E-value=0.0018 Score=65.52 Aligned_cols=71 Identities=15% Similarity=0.297 Sum_probs=50.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHH------hCCceEEecccccccCCCCChHHHHHHHHHH-------H----HHHHHhC
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAK------MGINPIMMSAGELESGNAGEPAKLIRQRYRE-------A----ADIIKKG 211 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~e------lg~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~-------A----~~~i~~~ 211 (465)
..-+||.||.|.|||+||+.|..- +.-.|+.+++..|. |++. ...+|.. | ..+++..
T Consensus 208 r~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlr----gd~a--msalfghvkgaftga~~~r~gllrsa 281 (531)
T COG4650 208 RAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLR----GDTA--MSALFGHVKGAFTGARESREGLLRSA 281 (531)
T ss_pred cCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeec----CchH--HHHHHhhhccccccchhhhhhhhccC
Confidence 345899999999999999998765 45579999998876 3322 2233332 1 2445566
Q ss_pred CceEEEeccccccc
Q 012383 212 KMCCLMINDLDAGA 225 (465)
Q Consensus 212 ~p~ILfIDEIDai~ 225 (465)
...+||+|||..+.
T Consensus 282 dggmlfldeigelg 295 (531)
T COG4650 282 DGGMLFLDEIGELG 295 (531)
T ss_pred CCceEehHhhhhcC
Confidence 67899999996653
No 419
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.50 E-value=0.012 Score=55.38 Aligned_cols=75 Identities=16% Similarity=0.118 Sum_probs=42.2
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHhCC--ceEEeccccc--ccCCCCChHHHHHHHHHHHHHHHHhCCceEEEeccc
Q 012383 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAGEL--ESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDL 221 (465)
Q Consensus 146 ~~~p~glLL~GPPGtGKT~LAraIA~elg~--~~i~vs~s~L--~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEI 221 (465)
+++...+.|.||.|+|||+|.+.++..... .-+.+.+..+ ......-+.. -++...-|.. -...|.++++||-
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgG-q~qrv~lara--l~~~p~lllLDEP 98 (177)
T cd03222 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGG-ELQRVAIAAA--LLRNATFYLFDEP 98 (177)
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHH-HHHHHHHHHH--HhcCCCEEEEECC
Confidence 345568899999999999999999986421 1222222111 1111101111 1233333311 3567999999997
Q ss_pred cc
Q 012383 222 DA 223 (465)
Q Consensus 222 Da 223 (465)
-+
T Consensus 99 ts 100 (177)
T cd03222 99 SA 100 (177)
T ss_pred cc
Confidence 43
No 420
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.50 E-value=0.011 Score=61.29 Aligned_cols=82 Identities=13% Similarity=0.154 Sum_probs=48.9
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHHHHhC---------CceEEeccccc---------ccCCCCCh-------------
Q 012383 145 NIKVPLILGIWGGKGQGKSFQCELVFAKMG---------INPIMMSAGEL---------ESGNAGEP------------- 193 (465)
Q Consensus 145 ~~~~p~glLL~GPPGtGKT~LAraIA~elg---------~~~i~vs~s~L---------~s~~~Ge~------------- 193 (465)
|+.+-..++++|+||+|||.+|..+|.... -..++++..+- ...+--..
T Consensus 119 G~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~~~~~~~~~l~~i~~~~~~ 198 (342)
T PLN03186 119 GIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERFGLNGADVLENVAYARAY 198 (342)
T ss_pred CCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHHHcCCChhhhccceEEEecC
Confidence 677778889999999999999997774321 14555554431 00000000
Q ss_pred -HHHHHHHHHHHHHHHHhCCceEEEecccccccC
Q 012383 194 -AKLIRQRYREAADIIKKGKMCCLMINDLDAGAG 226 (465)
Q Consensus 194 -~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~ 226 (465)
...+..++..+...+....+.+|+||=|-++..
T Consensus 199 ~~e~~~~ll~~~~~~~~~~~~~LIVIDSI~alfr 232 (342)
T PLN03186 199 NTDHQSELLLEAASMMAETRFALMIVDSATALYR 232 (342)
T ss_pred CHHHHHHHHHHHHHHhhccCCCEEEEeCcHHHHH
Confidence 011112233333344567899999999988754
No 421
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.50 E-value=0.0028 Score=57.27 Aligned_cols=28 Identities=29% Similarity=0.413 Sum_probs=24.2
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHh
Q 012383 146 IKVPLILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 146 ~~~p~glLL~GPPGtGKT~LAraIA~el 173 (465)
+++...+.|.||+|+|||+|.++++...
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 3455689999999999999999998875
No 422
>PRK12338 hypothetical protein; Provisional
Probab=96.49 E-value=0.003 Score=64.91 Aligned_cols=31 Identities=23% Similarity=0.298 Sum_probs=28.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHhCCceE
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPI 178 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~elg~~~i 178 (465)
.|..+++.|+||+|||++|+++|..+|+..+
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l~~~~~ 33 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTLNIKHL 33 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHCCCeEE
Confidence 5789999999999999999999999998654
No 423
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.49 E-value=0.063 Score=53.19 Aligned_cols=137 Identities=13% Similarity=0.251 Sum_probs=74.2
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHhCCc---eEEecccccccCC---C-----C------ChHHHHHHHHHHHHHHH
Q 012383 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGIN---PIMMSAGELESGN---A-----G------EPAKLIRQRYREAADII 208 (465)
Q Consensus 146 ~~~p~glLL~GPPGtGKT~LAraIA~elg~~---~i~vs~s~L~s~~---~-----G------e~~k~Ir~~F~~A~~~i 208 (465)
.+.|--+++.|++|||||.++..+...+.-. ++.++ ++....| + . +.+..+...-....+..
T Consensus 10 ~~~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t-~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~ 88 (241)
T PF04665_consen 10 LKDPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLIT-PEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYI 88 (241)
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEe-cCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHh
Confidence 3456678899999999999999988876432 22222 2221111 0 0 01111111111111111
Q ss_pred H------hCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCC
Q 012383 209 K------KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLY 282 (465)
Q Consensus 209 ~------~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD 282 (465)
+ ...+++|+|||+-. . . ..++.+.+++ . ...--++-+|..+...-.||
T Consensus 89 ~k~~~~k~~~~~LiIlDD~~~---~-----~--~k~~~l~~~~----~------------~gRH~~is~i~l~Q~~~~lp 142 (241)
T PF04665_consen 89 KKSPQKKNNPRFLIILDDLGD---K-----K--LKSKILRQFF----N------------NGRHYNISIIFLSQSYFHLP 142 (241)
T ss_pred hhhcccCCCCCeEEEEeCCCC---c-----h--hhhHHHHHHH----h------------cccccceEEEEEeeecccCC
Confidence 1 13478999999721 0 0 1122233222 2 12235688999999999999
Q ss_pred hhhhcCCCceEEEe-CCCHHHHHHHHHHhc
Q 012383 283 APLIRDGRMEKFYW-APTREDRIGVCKGIF 311 (465)
Q Consensus 283 ~ALlR~GRfd~~i~-~P~~e~R~~Il~~~l 311 (465)
+.++. -++.++. .-+..+...|++.+.
T Consensus 143 ~~iR~--n~~y~i~~~~s~~dl~~i~~~~~ 170 (241)
T PF04665_consen 143 PNIRS--NIDYFIIFNNSKRDLENIYRNMN 170 (241)
T ss_pred HHHhh--cceEEEEecCcHHHHHHHHHhcc
Confidence 98743 5666665 445555555555554
No 424
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.48 E-value=0.0045 Score=64.08 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 012383 151 ILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~el 173 (465)
.+++.|.||||||.||-.++.++
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 57899999999999999999998
No 425
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.46 E-value=0.0066 Score=62.44 Aligned_cols=69 Identities=12% Similarity=0.210 Sum_probs=42.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHhC-----CceEEe-ccccccc---CC---CCChHHHHHHHHHHHHHHHHhCCceEE
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKMG-----INPIMM-SAGELES---GN---AGEPAKLIRQRYREAADIIKKGKMCCL 216 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~elg-----~~~i~v-s~s~L~s---~~---~Ge~~k~Ir~~F~~A~~~i~~~~p~IL 216 (465)
.+.+++.|++|+|||+++++++.+.- ..++.+ ...++.- .+ ....+-...++++.+ -+..|..|
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~a----LR~~PD~I 223 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTT----LRMRPDRI 223 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHH----hcCCCCEE
Confidence 47899999999999999999998741 122221 2222210 00 001111234455555 67899999
Q ss_pred Eeccc
Q 012383 217 MINDL 221 (465)
Q Consensus 217 fIDEI 221 (465)
++.|+
T Consensus 224 ivGEi 228 (319)
T PRK13894 224 LVGEV 228 (319)
T ss_pred EEecc
Confidence 99999
No 426
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.46 E-value=0.013 Score=55.19 Aligned_cols=28 Identities=21% Similarity=0.317 Sum_probs=25.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHhC
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKMG 174 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~elg 174 (465)
++...++|.||+|+|||+|++.++..+.
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 3567899999999999999999999875
No 427
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.45 E-value=0.0054 Score=58.11 Aligned_cols=26 Identities=23% Similarity=0.243 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHh
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~el 173 (465)
.|+-+.|.||+|+|||+|++.+.++.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 47889999999999999999998875
No 428
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.45 E-value=0.024 Score=60.62 Aligned_cols=37 Identities=22% Similarity=0.367 Sum_probs=30.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEeccc
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG 183 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~s 183 (465)
.+|..++|.|++|+|||+++..+|..+ |..+..+++.
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D 137 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCAD 137 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCc
Confidence 457899999999999999999998776 6666766653
No 429
>PF14516 AAA_35: AAA-like domain
Probab=96.40 E-value=0.34 Score=49.96 Aligned_cols=39 Identities=13% Similarity=0.148 Sum_probs=31.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEecccccc
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELE 186 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~s~L~ 186 (465)
+..-+.++||..+|||++...+.+.+ |...+.++...+.
T Consensus 30 ~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~ 71 (331)
T PF14516_consen 30 PGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLG 71 (331)
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCC
Confidence 34678999999999999999887764 6777777766553
No 430
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=96.39 E-value=0.022 Score=57.80 Aligned_cols=69 Identities=17% Similarity=0.160 Sum_probs=46.3
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEeccccc
Q 012383 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA 223 (465)
Q Consensus 144 ~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDa 223 (465)
+..+..+.++|+|+.|+|||++.+.|..-+|-..+.+..+...+.. ++ ..|..| .-....++++||++.
T Consensus 71 ~~~~~~~~~~l~G~g~nGKStl~~~l~~l~G~~~~~~~~~~~~~~~-~~------~~f~~a----~l~gk~l~~~~E~~~ 139 (304)
T TIGR01613 71 GNYTEQKLFFLYGNGGNGKSTFQNLLSNLLGDYATTAVASLKMNEF-QE------HRFGLA----RLEGKRAVIGDEVQK 139 (304)
T ss_pred CCCCceEEEEEECCCCCcHHHHHHHHHHHhChhhccCCcchhhhhc-cC------CCchhh----hhcCCEEEEecCCCC
Confidence 3467779999999999999999999998888765443333323221 11 124444 433456888899864
No 431
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.38 E-value=0.0054 Score=63.37 Aligned_cols=70 Identities=14% Similarity=0.176 Sum_probs=44.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHhCC--ceEEe-cccccc-----------cCC--CCChHHHHHHHHHHHHHHHHhC
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAKMGI--NPIMM-SAGELE-----------SGN--AGEPAKLIRQRYREAADIIKKG 211 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~elg~--~~i~v-s~s~L~-----------s~~--~Ge~~k~Ir~~F~~A~~~i~~~ 211 (465)
..+.+|+.||+|+|||++.+++..+..- .++.+ ...++. ... .|...-...++.+.+ .+.
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~----LR~ 234 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEAC----LRL 234 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHH----hcc
Confidence 3578999999999999999999998643 22222 111221 000 122122234455555 688
Q ss_pred CceEEEeccc
Q 012383 212 KMCCLMINDL 221 (465)
Q Consensus 212 ~p~ILfIDEI 221 (465)
.|..|++.|+
T Consensus 235 ~PD~IivGEi 244 (332)
T PRK13900 235 RPDRIIVGEL 244 (332)
T ss_pred CCCeEEEEec
Confidence 8999999999
No 432
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.37 E-value=0.016 Score=58.30 Aligned_cols=37 Identities=19% Similarity=0.284 Sum_probs=28.7
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEecc
Q 012383 146 IKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 182 (465)
Q Consensus 146 ~~~p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~ 182 (465)
...|+.++|.||||+|||+++..+|..+ |..+..+++
T Consensus 69 ~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~ 108 (272)
T TIGR00064 69 ENKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAG 108 (272)
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 3457889999999999999999888775 555555544
No 433
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.37 E-value=0.0052 Score=58.48 Aligned_cols=36 Identities=31% Similarity=0.645 Sum_probs=28.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHhCC-ceEEecc
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKMGI-NPIMMSA 182 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~elg~-~~i~vs~ 182 (465)
..|..|.|.||+|||||+|+++|+..++. .+..++.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~ 40 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQ 40 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeC
Confidence 35789999999999999999999999843 3334444
No 434
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.36 E-value=0.033 Score=51.47 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHh
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~el 173 (465)
++...+.|.||+|+|||+|.++++...
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 26 EPGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 444578999999999999999999874
No 435
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.35 E-value=0.017 Score=53.40 Aligned_cols=27 Identities=22% Similarity=0.454 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHh
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~el 173 (465)
.+...+.|.||+|+|||+|.+.++...
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 344578999999999999999999864
No 436
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=96.33 E-value=0.015 Score=59.25 Aligned_cols=39 Identities=18% Similarity=0.226 Sum_probs=29.1
Q ss_pred HHHHHHhhhhCC-------CCCCCeEEEEEcCCCCcHHHHHHHHHH
Q 012383 133 VVHITKNFMSLP-------NIKVPLILGIWGGKGQGKSFQCELVFA 171 (465)
Q Consensus 133 ~~~i~k~~l~~~-------~~~~p~glLL~GPPGtGKT~LAraIA~ 171 (465)
.......||... ....|.+..+|||.|||||.|.|.+-.
T Consensus 64 ~~~~~~~~L~~dG~~~SLN~~~qP~I~~VYGPTG~GKSqLlRNLis 109 (369)
T PF02456_consen 64 QMNEASPYLRPDGSCPSLNYGLQPFIGVVYGPTGSGKSQLLRNLIS 109 (369)
T ss_pred HHHHHHHhcCcCCcccccccCCCceEEEEECCCCCCHHHHHHHhhh
Confidence 344566677532 346688999999999999999996543
No 437
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.31 E-value=0.0054 Score=59.69 Aligned_cols=40 Identities=20% Similarity=0.115 Sum_probs=30.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCC
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN 189 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~ 189 (465)
+.++|+||+|||||.+|-++|+++|.++|..+.-..+...
T Consensus 2 ~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l 41 (233)
T PF01745_consen 2 KVYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPEL 41 (233)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGG
T ss_pred cEEEEECCCCCChhHHHHHHHHHhCCCEEEecceeccccc
Confidence 3578999999999999999999999999998877776554
No 438
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.31 E-value=0.0066 Score=61.86 Aligned_cols=72 Identities=15% Similarity=0.165 Sum_probs=43.7
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHhCC--ceEEec-cccccc----------CC--CCChHHHHHHHHHHHHHHHHh
Q 012383 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGI--NPIMMS-AGELES----------GN--AGEPAKLIRQRYREAADIIKK 210 (465)
Q Consensus 146 ~~~p~glLL~GPPGtGKT~LAraIA~elg~--~~i~vs-~s~L~s----------~~--~Ge~~k~Ir~~F~~A~~~i~~ 210 (465)
++....+++.||+|+|||+++++++..+.- ..+.+. ..++.- .. .|...-...+++..+ -.
T Consensus 141 v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~----Lr 216 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSC----LR 216 (308)
T ss_pred hhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHH----hc
Confidence 344579999999999999999999988632 222221 111110 00 011112233444444 57
Q ss_pred CCceEEEeccc
Q 012383 211 GKMCCLMINDL 221 (465)
Q Consensus 211 ~~p~ILfIDEI 221 (465)
..|.+|++||+
T Consensus 217 ~~pd~ii~gE~ 227 (308)
T TIGR02788 217 MRPDRIILGEL 227 (308)
T ss_pred CCCCeEEEecc
Confidence 88999999999
No 439
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.31 E-value=0.0078 Score=63.73 Aligned_cols=31 Identities=19% Similarity=0.223 Sum_probs=27.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHhCCceEE
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~elg~~~i~ 179 (465)
.+-|.|.|++|||||+|++++|...|...+.
T Consensus 219 ~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~ 249 (399)
T PRK08099 219 VRTVAILGGESSGKSTLVNKLANIFNTTSAW 249 (399)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Confidence 4679999999999999999999999887554
No 440
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=96.31 E-value=0.0039 Score=68.36 Aligned_cols=144 Identities=15% Similarity=0.245 Sum_probs=73.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCChHHHHHHHHHH-H---HHHHHhCCceEEEeccccccc
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYRE-A---ADIIKKGKMCCLMINDLDAGA 225 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~-A---~~~i~~~~p~ILfIDEIDai~ 225 (465)
-.|||.|.||||||-+.|.+++-....++..--+ +.-+|-+....+....+ . ...+--....|.+|||+|++-
T Consensus 483 invLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqG---ASavGLTa~v~KdPvtrEWTLEaGALVLADkGvClIDEFDKMn 559 (854)
T KOG0477|consen 483 INVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQG---ASAVGLTAYVRKDPVTREWTLEAGALVLADKGVCLIDEFDKMN 559 (854)
T ss_pred eeEEEecCCCccHHHHHHHHHhcCcceeEeccCC---ccccceeEEEeeCCccceeeeccCeEEEccCceEEeehhhhhc
Confidence 4699999999999999999998765555442211 01111111000000000 0 000012234688999999974
Q ss_pred CCCCCCcccchhhHHHHHHHHHhhcCCccccCC--CccccCCCCCceEEEEeCCCC-------------CCChhhhcCCC
Q 012383 226 GRMGGTTQYTVNNQMVNATLMNIADNPTCVQLP--GMYNKEENPRVPIIVTGNDFS-------------TLYAPLIRDGR 290 (465)
Q Consensus 226 ~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~--g~~~~~~~~~V~VI~TTN~~~-------------~LD~ALlR~GR 290 (465)
.... .+....|-++.+ .+. |. ...-..+..||+|+|-.. .|-.+++. |
T Consensus 560 dqDR----tSIHEAMEQQSI----------SISKAGI-VtsLqArctvIAAanPigGRY~~s~tFaqNV~ltePIlS--R 622 (854)
T KOG0477|consen 560 DQDR----TSIHEAMEQQSI----------SISKAGI-VTSLQARCTVIAAANPIGGRYNPSLTFAQNVDLTEPILS--R 622 (854)
T ss_pred cccc----chHHHHHHhcch----------hhhhhhH-HHHHHhhhhhheecCCCCCccCCccchhhccccccchhh--h
Confidence 3221 112222222111 000 00 001135667999998621 45566675 8
Q ss_pred ceEEEe-----CCCHHHHHH--HHHHhccC
Q 012383 291 MEKFYW-----APTREDRIG--VCKGIFRN 313 (465)
Q Consensus 291 fd~~i~-----~P~~e~R~~--Il~~~l~~ 313 (465)
||..-- -|-.+++++ ++..|.+.
T Consensus 623 FDiLcVvkD~vd~~~De~lA~fVV~Sh~r~ 652 (854)
T KOG0477|consen 623 FDILCVVKDTVDPVQDEKLAKFVVGSHVRH 652 (854)
T ss_pred cceeeeeecccCchhHHHHHHHHHHhHhhc
Confidence 887555 566666643 46666654
No 441
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.30 E-value=0.032 Score=54.48 Aligned_cols=25 Identities=24% Similarity=-0.051 Sum_probs=21.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFA 171 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~ 171 (465)
.....++|.||.|+|||++.+.++.
T Consensus 29 ~~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 29 EGGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3446789999999999999999988
No 442
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.30 E-value=0.028 Score=60.31 Aligned_cols=37 Identities=19% Similarity=0.266 Sum_probs=30.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEeccc
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG 183 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~s 183 (465)
..|..++|+|++|+|||+++..+|..+ |..+..+++.
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D 132 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAAD 132 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 458899999999999999999998875 5566665544
No 443
>PRK14529 adenylate kinase; Provisional
Probab=96.30 E-value=0.0034 Score=61.42 Aligned_cols=35 Identities=31% Similarity=0.433 Sum_probs=28.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccC
Q 012383 152 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 188 (465)
Q Consensus 152 lLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~ 188 (465)
|+|.||||+|||++++.||+.+++..+ +.++++..
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~i--s~gdllr~ 37 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHI--ESGAIFRE 37 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCc--ccchhhhh
Confidence 788999999999999999999987654 44555544
No 444
>PRK13975 thymidylate kinase; Provisional
Probab=96.29 E-value=0.0076 Score=56.40 Aligned_cols=28 Identities=25% Similarity=0.228 Sum_probs=25.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhCCce
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKMGINP 177 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~elg~~~ 177 (465)
+-|.|.|++|+|||++++.+++.++..+
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~~~ 30 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNAFW 30 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 5688999999999999999999998643
No 445
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.26 E-value=0.022 Score=61.76 Aligned_cols=40 Identities=10% Similarity=0.112 Sum_probs=31.4
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHHHH----hCCceEEeccc
Q 012383 144 PNIKVPLILGIWGGKGQGKSFQCELVFAK----MGINPIMMSAG 183 (465)
Q Consensus 144 ~~~~~p~glLL~GPPGtGKT~LAraIA~e----lg~~~i~vs~s 183 (465)
.|+.+...+||.||||||||++|..++.+ .|-+.++++..
T Consensus 16 GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e 59 (484)
T TIGR02655 16 GGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE 59 (484)
T ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 37888899999999999999999987543 25676666643
No 446
>PLN02199 shikimate kinase
Probab=96.25 E-value=0.0092 Score=60.76 Aligned_cols=33 Identities=18% Similarity=0.127 Sum_probs=30.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHhCCceEEec
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 181 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs 181 (465)
.+.|+|.|.+|+|||++++.+|+.+|++|+..+
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD 134 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCD 134 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEehH
Confidence 458999999999999999999999999998865
No 447
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=96.24 E-value=0.0066 Score=60.35 Aligned_cols=51 Identities=27% Similarity=0.470 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhhhh---CCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEE
Q 012383 129 MDKLVVHITKNFMS---LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (465)
Q Consensus 129 ~d~~~~~i~k~~l~---~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~ 179 (465)
.++.....++.|+. ....+.|..+||=|+||+|||++|.-||..+|+.-+.
T Consensus 66 ~~k~~~e~a~rY~lwR~ir~~~~p~IILIGGasGVGkStIA~ElA~rLgI~~vi 119 (299)
T COG2074 66 LEKGDPEVAKRYLLWRRIRKMKRPLIILIGGASGVGKSTIAGELARRLGIRSVI 119 (299)
T ss_pred HHhcCHHHHHHHHHHHHHhccCCCeEEEecCCCCCChhHHHHHHHHHcCCceee
Confidence 33444556777775 3467789999999999999999999999999997554
No 448
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=96.22 E-value=0.018 Score=63.71 Aligned_cols=28 Identities=21% Similarity=0.157 Sum_probs=24.6
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHHHH
Q 012383 145 NIKVPLILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 145 ~~~~p~glLL~GPPGtGKT~LAraIA~e 172 (465)
.+++-.-+|+.||+|||||+|.|+||.-
T Consensus 415 ~v~~G~~llI~G~SG~GKTsLlRaiaGL 442 (604)
T COG4178 415 EVRPGERLLITGESGAGKTSLLRALAGL 442 (604)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4556678999999999999999999976
No 449
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.20 E-value=0.02 Score=51.33 Aligned_cols=25 Identities=24% Similarity=0.305 Sum_probs=21.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCc
Q 012383 152 LGIWGGKGQGKSFQCELVFAKMGIN 176 (465)
Q Consensus 152 lLL~GPPGtGKT~LAraIA~elg~~ 176 (465)
++|.||+|+|||++++.+++.....
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCcc
Confidence 5789999999999999999986443
No 450
>PRK10867 signal recognition particle protein; Provisional
Probab=96.19 E-value=0.018 Score=61.67 Aligned_cols=37 Identities=19% Similarity=0.301 Sum_probs=28.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHh----CCceEEeccc
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSAG 183 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~el----g~~~i~vs~s 183 (465)
.+|..+++.||+|+|||+++.-+|..+ |..+..+++.
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D 138 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAAD 138 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEcc
Confidence 458899999999999999887777653 6666666654
No 451
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.17 E-value=0.037 Score=56.89 Aligned_cols=36 Identities=22% Similarity=0.363 Sum_probs=28.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEecc
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 182 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~ 182 (465)
..|..++|.||+|+|||+++..+|..+ |..+..+.+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~ 150 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAG 150 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEec
Confidence 457889999999999999999999885 444544443
No 452
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.16 E-value=0.024 Score=53.74 Aligned_cols=58 Identities=21% Similarity=0.270 Sum_probs=43.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEecccccccC---CCCCh----HHHHHHHHHHH
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG---NAGEP----AKLIRQRYREA 204 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~s~L~s~---~~Ge~----~k~Ir~~F~~A 204 (465)
..|..|.|+|.+|+|||++|.++.+++ |.+.+.+++..+... ..|=+ ..+||.+-.-|
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~edR~eniRRvaevA 88 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSREDRIENIRRVAEVA 88 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCChHHHHHHHHHHHHHH
Confidence 456788999999999999999999985 889999998887433 33432 33555554444
No 453
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=96.16 E-value=0.0054 Score=57.29 Aligned_cols=28 Identities=39% Similarity=0.597 Sum_probs=24.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCceEEe
Q 012383 152 LGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (465)
Q Consensus 152 lLL~GPPGtGKT~LAraIA~elg~~~i~v 180 (465)
|+|+|+||+|||++++.+++ +|++++..
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i~~ 29 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPVIDA 29 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCEEec
Confidence 78999999999999999998 78766553
No 454
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.14 E-value=0.017 Score=64.59 Aligned_cols=28 Identities=25% Similarity=0.370 Sum_probs=24.7
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHHHH
Q 012383 145 NIKVPLILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 145 ~~~~p~glLL~GPPGtGKT~LAraIA~e 172 (465)
.++|-+.+-|.||+|.|||++|..+-+-
T Consensus 490 ti~pGe~vALVGPSGsGKSTiasLL~rf 517 (716)
T KOG0058|consen 490 TIRPGEVVALVGPSGSGKSTIASLLLRF 517 (716)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 5677789999999999999999998765
No 455
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.14 E-value=0.065 Score=64.73 Aligned_cols=162 Identities=17% Similarity=0.210 Sum_probs=92.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEEeccccc--ccCCCCChHHHH--HHHHHHH--HHHHHhCCceEEEecccccc
Q 012383 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL--ESGNAGEPAKLI--RQRYREA--ADIIKKGKMCCLMINDLDAG 224 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L--~s~~~Ge~~k~I--r~~F~~A--~~~i~~~~p~ILfIDEIDai 224 (465)
-+||-||.-+|||++.+.+|.++|-.|+.++..+= ...|+|....-- .--|++. .+.+++ .--|++||+.-
T Consensus 890 P~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~--GyWIVLDELNL- 966 (4600)
T COG5271 890 PLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRR--GYWIVLDELNL- 966 (4600)
T ss_pred cEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhc--CcEEEeecccc-
Confidence 48999999999999999999999999999886543 233444211000 0012221 122233 34788999842
Q ss_pred cCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccC-CCCCceEEEEeCCCC------CCChhhhcCCCceEEEe-
Q 012383 225 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE-ENPRVPIIVTGNDFS------TLYAPLIRDGRMEKFYW- 296 (465)
Q Consensus 225 ~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~-~~~~V~VI~TTN~~~------~LD~ALlR~GRfd~~i~- 296 (465)
++ .-+-..|..|+|+-....++.-.... +.+...+.+|-|.|. -|..|++- ||-...+
T Consensus 967 Ap------------TDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRN--RFlE~hFd 1032 (4600)
T COG5271 967 AP------------TDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRN--RFLEMHFD 1032 (4600)
T ss_pred Cc------------HHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHh--hhHhhhcc
Confidence 21 12345677788876666666553333 334545555556442 34555543 5544444
Q ss_pred -CCCHHHHHHHHHHhccCCCCChhHHHHHhcCCCchhh
Q 012383 297 -APTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSI 333 (465)
Q Consensus 297 -~P~~e~R~~Il~~~l~~~~v~~~~la~lt~gfsgadl 333 (465)
.| +++...|++. ...+.+..-.++++-|.+-.+
T Consensus 1033 dip-edEle~ILh~---rc~iapSyakKiVeVyr~Ls~ 1066 (4600)
T COG5271 1033 DIP-EDELEEILHG---RCEIAPSYAKKIVEVYRGLSS 1066 (4600)
T ss_pred cCc-HHHHHHHHhc---cCccCHHHHHHHHHHHHHhhh
Confidence 44 3445555533 335556655666666665443
No 456
>PRK05439 pantothenate kinase; Provisional
Probab=96.12 E-value=0.0088 Score=61.32 Aligned_cols=40 Identities=33% Similarity=0.471 Sum_probs=32.7
Q ss_pred HHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhC
Q 012383 135 HITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMG 174 (465)
Q Consensus 135 ~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg 174 (465)
.+.+.|+.....+.|..|.+.|+||+|||++|+.++..++
T Consensus 72 ~~~~~fl~~~~~~~~~iIgIaG~~gsGKSTla~~L~~~l~ 111 (311)
T PRK05439 72 AALEQFLGKNGQKVPFIIGIAGSVAVGKSTTARLLQALLS 111 (311)
T ss_pred HHHHHHhcccCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3455566555677889999999999999999999998764
No 457
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=96.11 E-value=0.028 Score=66.96 Aligned_cols=173 Identities=12% Similarity=0.120 Sum_probs=103.5
Q ss_pred CCeEEEEEcCCCCcHHHH-HHHHHHHhCCceEEecccccccCCCCChHHHHHHHHHHHHHHHHh-----------CCceE
Q 012383 148 VPLILGIWGGKGQGKSFQ-CELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK-----------GKMCC 215 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~L-AraIA~elg~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~-----------~~p~I 215 (465)
.-++++++||||+|||++ +-++-+++-..++.++.+.-. .++..++-+ .+--..... -+--|
T Consensus 1493 t~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t-----~T~s~ls~L-er~t~yy~~tg~~~l~PK~~vK~lV 1566 (3164)
T COG5245 1493 TLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCT-----MTPSKLSVL-ERETEYYPNTGVVRLYPKPVVKDLV 1566 (3164)
T ss_pred ccceEEEECCCCCccchhcchhhhhhhheeeeEEeecccc-----CCHHHHHHH-HhhceeeccCCeEEEccCcchhheE
Confidence 358999999999999995 557778877777777655322 112222222 221000011 11238
Q ss_pred EEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccC-----CCCCceEEEEeCCCCCC-----Chhh
Q 012383 216 LMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE-----ENPRVPIIVTGNDFSTL-----YAPL 285 (465)
Q Consensus 216 LfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~-----~~~~V~VI~TTN~~~~L-----D~AL 285 (465)
||.|||. +-..+.-..+ ++ .-+|-.++ +-+|+|..- ...++.+.+++|-+.+. +.-+
T Consensus 1567 LFcDeIn-Lp~~~~y~~~-~v-----I~FlR~l~------e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eRf 1633 (3164)
T COG5245 1567 LFCDEIN-LPYGFEYYPP-TV-----IVFLRPLV------ERQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYERF 1633 (3164)
T ss_pred EEeeccC-CccccccCCC-ce-----EEeeHHHH------HhcccccchhhhHhhhcceEEEccCCCCCCcccCccHHHH
Confidence 9999998 3322210111 11 00111111 234677652 35788999999976543 3446
Q ss_pred hcCCCceEEEe--CCCHHHHHHHHHHhccCCCCChhHHHHHhcCCCchhhHHHHHHHhh
Q 012383 286 IRDGRMEKFYW--APTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRAR 342 (465)
Q Consensus 286 lR~GRfd~~i~--~P~~e~R~~Il~~~l~~~~v~~~~la~lt~gfsgadld~~~alra~ 342 (465)
+| --.+++ -|.......|..+++...-+-.++...+++.+.-+..+++..+|++
T Consensus 1634 ~r---~~v~vf~~ype~~SL~~Iyea~l~~s~l~~~ef~~~se~~~~aSv~ly~~~k~~ 1689 (3164)
T COG5245 1634 IR---KPVFVFCCYPELASLRNIYEAVLMGSYLCFDEFNRLSEETMSASVELYLSSKDK 1689 (3164)
T ss_pred hc---CceEEEecCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 64 234444 8999999999998887766666667777777777777777666654
No 458
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.10 E-value=0.019 Score=57.79 Aligned_cols=37 Identities=16% Similarity=0.293 Sum_probs=28.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHh----C-CceEEeccc
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKM----G-INPIMMSAG 183 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~el----g-~~~i~vs~s 183 (465)
..+..++|.||+|+|||+++..+|..+ | ..+..++..
T Consensus 192 ~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D 233 (282)
T TIGR03499 192 EQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTD 233 (282)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECC
Confidence 346789999999999999999998875 4 555555544
No 459
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.08 E-value=0.0051 Score=57.66 Aligned_cols=30 Identities=13% Similarity=0.187 Sum_probs=25.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhCCceEE
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~elg~~~i~ 179 (465)
..+.|.||+|+|||++++.++..++..++.
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~ 32 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLLV 32 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEEE
Confidence 468899999999999999999988765433
No 460
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=96.08 E-value=0.0029 Score=67.69 Aligned_cols=45 Identities=22% Similarity=0.165 Sum_probs=34.1
Q ss_pred chhHHHHHHHHHHHhhhh--CCCCCCCeEEEEEcCCCCcHHHHHHHHHHH
Q 012383 125 APAFMDKLVVHITKNFMS--LPNIKVPLILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 125 ~~~~~d~~~~~i~k~~l~--~~~~~~p~glLL~GPPGtGKT~LAraIA~e 172 (465)
.+.|.|-.....+|.-+. .-|. .++||+||||||||++|+.+..-
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAAGg---HnLl~~GpPGtGKTmla~Rl~~l 221 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAAGG---HNLLLVGPPGTGKTMLASRLPGL 221 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHhcC---CcEEEecCCCCchHHhhhhhccc
Confidence 567777777777777664 2233 58999999999999999987654
No 461
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.03 E-value=0.0062 Score=58.09 Aligned_cols=28 Identities=32% Similarity=0.672 Sum_probs=23.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHhCC
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAKMGI 175 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~elg~ 175 (465)
.+..|.|.||+|+|||+|+++++..+..
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3466789999999999999999998763
No 462
>PRK13808 adenylate kinase; Provisional
Probab=96.03 E-value=0.0058 Score=63.15 Aligned_cols=33 Identities=30% Similarity=0.490 Sum_probs=27.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCceEEecccccc
Q 012383 152 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 186 (465)
Q Consensus 152 lLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~ 186 (465)
|+|+||||+|||++++.||..+|+. .++.++|+
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl~--~is~gdlL 35 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIV--QLSTGDML 35 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCc--eecccHHH
Confidence 7899999999999999999999874 44444444
No 463
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.03 E-value=0.013 Score=56.80 Aligned_cols=24 Identities=17% Similarity=0.234 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhC
Q 012383 151 ILGIWGGKGQGKSFQCELVFAKMG 174 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~elg 174 (465)
-|+|+|+||+|||++|+-+|+++.
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHH
Confidence 478999999999999999999974
No 464
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.061 Score=56.95 Aligned_cols=151 Identities=17% Similarity=0.166 Sum_probs=86.7
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHHHHhC--CceEEecccccccC------CCC--------ChHHHHHHHHHHHHHHH
Q 012383 145 NIKVPLILGIWGGKGQGKSFQCELVFAKMG--INPIMMSAGELESG------NAG--------EPAKLIRQRYREAADII 208 (465)
Q Consensus 145 ~~~~p~glLL~GPPGtGKT~LAraIA~elg--~~~i~vs~s~L~s~------~~G--------e~~k~Ir~~F~~A~~~i 208 (465)
|+-+---+|+-|.||.|||+|.-.++..+. ..++++++.+=... ..| -.+.++..+.+..
T Consensus 89 G~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l---- 164 (456)
T COG1066 89 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAEL---- 164 (456)
T ss_pred CcccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHH----
Confidence 444445678889999999999998888753 26889988743221 111 1233444444444
Q ss_pred HhCCceEEEecccccccCCCCCCcccch-hhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChh-hh
Q 012383 209 KKGKMCCLMINDLDAGAGRMGGTTQYTV-NNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAP-LI 286 (465)
Q Consensus 209 ~~~~p~ILfIDEIDai~~~r~~~~~~~v-~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~A-Ll 286 (465)
...+|.+++||-|-.+....-.+...++ .-+.....|+++.. ...--+++++---....|--+ ++
T Consensus 165 ~~~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK-------------~~~i~~fiVGHVTKeG~IAGPrvL 231 (456)
T COG1066 165 EQEKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAK-------------TKNIAIFIVGHVTKEGAIAGPRVL 231 (456)
T ss_pred HhcCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHH-------------HcCCeEEEEEEEcccccccCchhe
Confidence 7889999999999877654421111222 23455556666654 222233444433333333322 33
Q ss_pred cCCCceEEEe-CCCHHHHHHHHHHhccC
Q 012383 287 RDGRMEKFYW-APTREDRIGVCKGIFRN 313 (465)
Q Consensus 287 R~GRfd~~i~-~P~~e~R~~Il~~~l~~ 313 (465)
-+-.|-.++ --++.....|++.+-..
T Consensus 232 -EHmVDtVlyFEGd~~~~~RiLR~vKNR 258 (456)
T COG1066 232 -EHMVDTVLYFEGDRHSRYRILRSVKNR 258 (456)
T ss_pred -eeeeeEEEEEeccCCCceeeeehhccc
Confidence 234565555 55666677777665533
No 465
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=96.02 E-value=0.13 Score=54.08 Aligned_cols=52 Identities=19% Similarity=0.446 Sum_probs=40.5
Q ss_pred HHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEeccccc
Q 012383 134 VHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 185 (465)
Q Consensus 134 ~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L 185 (465)
+...+.++....-..|-.|.|||..|||||++.+.+.++++.+.+.+++-+.
T Consensus 15 i~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ec 66 (438)
T KOG2543|consen 15 IRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVEC 66 (438)
T ss_pred HHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHh
Confidence 3344455544344678999999999999999999999999998888775543
No 466
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.01 E-value=0.0088 Score=62.15 Aligned_cols=70 Identities=16% Similarity=0.163 Sum_probs=43.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHhCC--ceEEec-ccccccC--------C----CCChHHHHHHHHHHHHHHHHhCC
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAKMGI--NPIMMS-AGELESG--------N----AGEPAKLIRQRYREAADIIKKGK 212 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~elg~--~~i~vs-~s~L~s~--------~----~Ge~~k~Ir~~F~~A~~~i~~~~ 212 (465)
..+.+|+.||+|+|||+++++++..... ..+.+. ..++.-. + .|...-...++++.+ -+..
T Consensus 161 ~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~----LR~~ 236 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQAS----LRMR 236 (344)
T ss_pred cCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHH----hcCC
Confidence 3578999999999999999999998643 222211 1122100 0 111112233445544 5778
Q ss_pred ceEEEeccc
Q 012383 213 MCCLMINDL 221 (465)
Q Consensus 213 p~ILfIDEI 221 (465)
|..|++.|+
T Consensus 237 pD~IivGEi 245 (344)
T PRK13851 237 PDRILLGEM 245 (344)
T ss_pred CCeEEEEee
Confidence 999999998
No 467
>PRK08356 hypothetical protein; Provisional
Probab=96.00 E-value=0.0081 Score=56.81 Aligned_cols=32 Identities=22% Similarity=0.399 Sum_probs=25.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccc
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE 184 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~ 184 (465)
..++|.||||+|||++|+.+. +.|++ .++.++
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~-~~g~~--~is~~~ 37 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFE-EKGFC--RVSCSD 37 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCCCc--EEeCCC
Confidence 468899999999999999995 56766 444443
No 468
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.99 E-value=0.0063 Score=57.46 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhC
Q 012383 151 ILGIWGGKGQGKSFQCELVFAKMG 174 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~elg 174 (465)
.|.|.||||+|||++|+.|+..++
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999999986
No 469
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.98 E-value=0.15 Score=49.71 Aligned_cols=21 Identities=19% Similarity=0.097 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 012383 152 LGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 152 lLL~GPPGtGKT~LAraIA~e 172 (465)
-+|+||||+|||+|+-.+|..
T Consensus 4 ~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHH
Confidence 478999999999999988865
No 470
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.98 E-value=0.026 Score=52.43 Aligned_cols=24 Identities=25% Similarity=0.194 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~el 173 (465)
.-.+|+||||+|||+++..++..+
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~ 56 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAAL 56 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHH
Confidence 458899999999999999888874
No 471
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.98 E-value=0.01 Score=58.68 Aligned_cols=40 Identities=18% Similarity=0.165 Sum_probs=33.0
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHHHH---hCCceEEeccc
Q 012383 144 PNIKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAG 183 (465)
Q Consensus 144 ~~~~~p~glLL~GPPGtGKT~LAraIA~e---lg~~~i~vs~s 183 (465)
.|++.-..+|++|+||||||.++...+.+ .|.+.+.++..
T Consensus 18 GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~ 60 (260)
T COG0467 18 GGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTE 60 (260)
T ss_pred CCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEec
Confidence 46777789999999999999999987776 36778887765
No 472
>PTZ00202 tuzin; Provisional
Probab=95.96 E-value=0.051 Score=58.38 Aligned_cols=44 Identities=23% Similarity=0.345 Sum_probs=33.7
Q ss_pred hhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecc
Q 012383 139 NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 182 (465)
Q Consensus 139 ~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~ 182 (465)
..+.......|+.+.|.||+|||||++++.+...++...+.++.
T Consensus 276 ~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNp 319 (550)
T PTZ00202 276 QVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDV 319 (550)
T ss_pred HHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECC
Confidence 33333455567899999999999999999999998866555543
No 473
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=95.95 E-value=0.015 Score=64.07 Aligned_cols=165 Identities=16% Similarity=0.259 Sum_probs=90.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhCC--ceEEecccccc-----cCCCCChHHHHHHHHHHH-HHHHHhCCceEEEeccc
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAGELE-----SGNAGEPAKLIRQRYREA-ADIIKKGKMCCLMINDL 221 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~elg~--~~i~vs~s~L~-----s~~~Ge~~k~Ir~~F~~A-~~~i~~~~p~ILfIDEI 221 (465)
.-+||.|.|||||-.++++|-...+. +|+-+++.-+- +.++|-.+......+.+- ...+....-..||+|||
T Consensus 337 ~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~gGtlFldeI 416 (606)
T COG3284 337 LPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADGGTLFLDEI 416 (606)
T ss_pred CCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCCCccHHHHh
Confidence 35899999999999999999887553 68888876542 222221111111111111 00001223347999999
Q ss_pred ccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhhcCCCceEEEe-----
Q 012383 222 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW----- 296 (465)
Q Consensus 222 Dai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~----- 296 (465)
.-+. -.++.-|+.++..-..+-+.|. ...-.|-||+||++. =..|.+.|||-.-+|
T Consensus 417 gd~p-------------~~~Qs~LLrVl~e~~v~p~g~~---~~~vdirvi~ath~d---l~~lv~~g~fredLyyrL~~ 477 (606)
T COG3284 417 GDMP-------------LALQSRLLRVLQEGVVTPLGGT---RIKVDIRVIAATHRD---LAQLVEQGRFREDLYYRLNA 477 (606)
T ss_pred hhch-------------HHHHHHHHHHHhhCceeccCCc---ceeEEEEEEeccCcC---HHHHHHcCCchHHHHHHhcC
Confidence 4332 2234455566653333333333 223457899999874 134778888864333
Q ss_pred ----CCCHHHHH---HHHHHhccC-----CCCChhHHHHH-hcCCCchhh
Q 012383 297 ----APTREDRI---GVCKGIFRN-----DNVADDDIVKL-VDTFPGQSI 333 (465)
Q Consensus 297 ----~P~~e~R~---~Il~~~l~~-----~~v~~~~la~l-t~gfsgadl 333 (465)
+|...+|. ..+..++.. ..++.+.++.+ ...++|-.-
T Consensus 478 ~~i~lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPGNir 527 (606)
T COG3284 478 FVITLPPLRERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPGNIR 527 (606)
T ss_pred eeeccCchhcccccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCCcHH
Confidence 67766663 334444432 24556655555 346777443
No 474
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=95.95 E-value=0.0051 Score=62.58 Aligned_cols=56 Identities=21% Similarity=0.187 Sum_probs=47.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHhCC--ceEEecccccccCCCCChHHHHHHHHHHH
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAGELESGNAGEPAKLIRQRYREA 204 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~elg~--~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A 204 (465)
.-+.+|+.|+||||||.+|-.+++.+|- +|..++++++.+--...++.+ .+.|+++
T Consensus 65 aGraiLiaG~pgtGKtAiAmg~sksLG~~tpF~~i~gSEI~SlEmsKTEAl-tQAfRks 122 (454)
T KOG2680|consen 65 AGRAILIAGQPGTGKTAIAMGMSKSLGDDTPFTSISGSEIYSLEMSKTEAL-TQAFRKS 122 (454)
T ss_pred cceEEEEecCCCCCceeeeeehhhhhCCCCceeeeecceeeeecccHHHHH-HHHHHHh
Confidence 3589999999999999999999999985 899999999987766666544 5677776
No 475
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=95.95 E-value=0.015 Score=63.16 Aligned_cols=72 Identities=22% Similarity=0.299 Sum_probs=43.4
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHHHHhCC-------ceEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEE
Q 012383 145 NIKVPLILGIWGGKGQGKSFQCELVFAKMGI-------NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLM 217 (465)
Q Consensus 145 ~~~~p~glLL~GPPGtGKT~LAraIA~elg~-------~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILf 217 (465)
..+||-++-+.||||||||+|.+.+-..+-- .+|.+..+.-.--..=+...-+.+...-| +-....+|+
T Consensus 65 d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvsgK~RRiTflEcp~Dl~~miDva----KIaDLVlLl 140 (1077)
T COG5192 65 DLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSGKTRRITFLECPSDLHQMIDVA----KIADLVLLL 140 (1077)
T ss_pred cCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEeecceeEEEEEeChHHHHHHHhHH----HhhheeEEE
Confidence 6688899999999999999999998877422 12222222110000112234455555555 555667777
Q ss_pred ecc
Q 012383 218 IND 220 (465)
Q Consensus 218 IDE 220 (465)
||-
T Consensus 141 Idg 143 (1077)
T COG5192 141 IDG 143 (1077)
T ss_pred ecc
Confidence 774
No 476
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.95 E-value=0.0067 Score=56.09 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=22.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCC
Q 012383 151 ILGIWGGKGQGKSFQCELVFAKMGI 175 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~elg~ 175 (465)
.++|.||||+|||+++++++..++.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCc
Confidence 5789999999999999999998754
No 477
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.94 E-value=0.025 Score=61.33 Aligned_cols=40 Identities=15% Similarity=0.162 Sum_probs=32.4
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEeccc
Q 012383 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG 183 (465)
Q Consensus 144 ~~~~~p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~s 183 (465)
.|+.+...+|+.||||+|||+|+-.++.+. |-+.++++..
T Consensus 258 GG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~e 300 (484)
T TIGR02655 258 GGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYE 300 (484)
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEee
Confidence 377878899999999999999999888763 5566766644
No 478
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=95.94 E-value=0.0086 Score=57.79 Aligned_cols=32 Identities=28% Similarity=0.430 Sum_probs=28.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHhCCceEE
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~elg~~~i~ 179 (465)
.|..|.|+|++|||||++++.++.++|++++.
T Consensus 5 ~~~~IglTG~iGsGKStv~~~l~~~lg~~vid 36 (204)
T PRK14733 5 NTYPIGITGGIASGKSTATRILKEKLNLNVVC 36 (204)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHcCCeEEe
Confidence 46789999999999999999999999988665
No 479
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=95.93 E-value=0.0087 Score=53.33 Aligned_cols=36 Identities=22% Similarity=0.230 Sum_probs=26.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecc
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 182 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~ 182 (465)
++...|+|+|+=|.|||+++|.+++.+|..-...|+
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~lg~~~~V~SP 48 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARALGIDEEVTSP 48 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHTT--S----T
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCCCcCCC
Confidence 445789999999999999999999999987533333
No 480
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=95.93 E-value=0.0082 Score=57.19 Aligned_cols=29 Identities=28% Similarity=0.365 Sum_probs=26.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEE
Q 012383 151 ILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~elg~~~i~ 179 (465)
.|.|+|++|+|||++++.+++.+|++++.
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g~~~i~ 31 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKGIPILD 31 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCeEee
Confidence 58999999999999999999988887775
No 481
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=95.93 E-value=0.018 Score=62.97 Aligned_cols=58 Identities=24% Similarity=0.378 Sum_probs=39.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceE
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCC 215 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~I 215 (465)
..|.-|+++|+||+|||++|+.++...|+. .++...+ |. .......|.+.+..+.+.|
T Consensus 367 ~~p~LVil~G~pGSGKST~A~~l~~~~g~~--~vn~D~l-----g~----~~~~~~~a~~~L~~G~sVV 424 (526)
T TIGR01663 367 APCEMVIAVGFPGAGKSHFCKKFFQPAGYK--HVNADTL-----GS----TQNCLTACERALDQGKRCA 424 (526)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHcCCe--EECcHHH-----HH----HHHHHHHHHHHHhCCCcEE
Confidence 567899999999999999999999987754 4444333 21 1233444555566666543
No 482
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=95.91 E-value=0.0091 Score=58.01 Aligned_cols=30 Identities=33% Similarity=0.430 Sum_probs=26.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhCCceEE
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~elg~~~i~ 179 (465)
..|.|.||+|||||++++.+|+++++.++.
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~~~~~~~ 32 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLGYAYLD 32 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceee
Confidence 468899999999999999999999987664
No 483
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.91 E-value=0.016 Score=57.98 Aligned_cols=68 Identities=18% Similarity=0.237 Sum_probs=41.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhC---CceEEec-ccccccC-----CCCChHHHHHHHHHHHHHHHHhCCceEEEeccc
Q 012383 151 ILGIWGGKGQGKSFQCELVFAKMG---INPIMMS-AGELESG-----NAGEPAKLIRQRYREAADIIKKGKMCCLMINDL 221 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~elg---~~~i~vs-~s~L~s~-----~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEI 221 (465)
.+++.||+|+|||++.+++..++. ..++.+. ..++.-. .+.+.. ..-|..+...+-+..|.+|+|+||
T Consensus 82 lilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~~~~q~~v~~~~---~~~~~~~l~~~lR~~PD~i~vgEi 158 (264)
T cd01129 82 IILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIPGINQVQVNEKA---GLTFARGLRAILRQDPDIIMVGEI 158 (264)
T ss_pred EEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCCCceEEEeCCcC---CcCHHHHHHHHhccCCCEEEeccC
Confidence 589999999999999999987763 2344432 2222111 011100 012444433336788999999999
No 484
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.90 E-value=0.013 Score=59.50 Aligned_cols=39 Identities=26% Similarity=0.457 Sum_probs=31.1
Q ss_pred HHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhC
Q 012383 136 ITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMG 174 (465)
Q Consensus 136 i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg 174 (465)
..+.|+.....+.|..|.|.||+|+|||++|+.+...+.
T Consensus 49 ~~~~f~~~~~~~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 49 VLEQFLGTNGAKIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred HHHHHHhcccCCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 344555555567899999999999999999999877764
No 485
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.90 E-value=0.0093 Score=55.99 Aligned_cols=35 Identities=26% Similarity=0.469 Sum_probs=27.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhC---CceEEecccccc
Q 012383 152 LGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGELE 186 (465)
Q Consensus 152 lLL~GPPGtGKT~LAraIA~elg---~~~i~vs~s~L~ 186 (465)
|++.|+||+|||++|+.++..++ .+...++..++.
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~ 39 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYY 39 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcc
Confidence 68999999999999999999973 455555554443
No 486
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=95.88 E-value=0.044 Score=51.46 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCC
Q 012383 151 ILGIWGGKGQGKSFQCELVFAKMGI 175 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~elg~ 175 (465)
-.+++||.|+|||.+..||+-.++.
T Consensus 24 ~~~i~G~NGsGKSnil~Ai~~~~~~ 48 (178)
T cd03239 24 FNAIVGPNGSGKSNIVDAICFVLGG 48 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCc
Confidence 6679999999999999999887654
No 487
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.87 E-value=0.022 Score=56.73 Aligned_cols=83 Identities=14% Similarity=0.209 Sum_probs=49.5
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHHHHhC---------CceEEecccc---------cccCCCCChH-----------
Q 012383 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKMG---------INPIMMSAGE---------LESGNAGEPA----------- 194 (465)
Q Consensus 144 ~~~~~p~glLL~GPPGtGKT~LAraIA~elg---------~~~i~vs~s~---------L~s~~~Ge~~----------- 194 (465)
.|++.-...=|+||||||||.||-.+|-... ...++++... +...+.-+..
T Consensus 33 GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~~~~~~l~~I~v~~~ 112 (256)
T PF08423_consen 33 GGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGLDPEEILDNIFVIRV 112 (256)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS-HHHHHHTEEEEE-
T ss_pred CCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhccccccchhhhceeeeec
Confidence 4676667777999999999999998876642 2355554322 1111111111
Q ss_pred ---HHHHHHHHHHHHHHHhCCceEEEecccccccC
Q 012383 195 ---KLIRQRYREAADIIKKGKMCCLMINDLDAGAG 226 (465)
Q Consensus 195 ---k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~ 226 (465)
..+..+.......+...+-.+|+||-|-++..
T Consensus 113 ~~~~~l~~~L~~l~~~l~~~~ikLIVIDSIaalfr 147 (256)
T PF08423_consen 113 FDLEELLELLEQLPKLLSESKIKLIVIDSIAALFR 147 (256)
T ss_dssp SSHHHHHHHHHHHHHHHHHSCEEEEEEETSSHHHH
T ss_pred CCHHHHHHHHHHHHhhccccceEEEEecchHHHHH
Confidence 11112223333444567789999999988764
No 488
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=95.87 E-value=0.017 Score=65.32 Aligned_cols=27 Identities=30% Similarity=0.315 Sum_probs=22.5
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHH
Q 012383 146 IKVPLILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 146 ~~~p~glLL~GPPGtGKT~LAraIA~e 172 (465)
+++-.-+.+.|++|||||+|+|.+..-
T Consensus 496 I~~Ge~vaIvG~SGsGKSTL~KLL~gl 522 (709)
T COG2274 496 IPPGEKVAIVGRSGSGKSTLLKLLLGL 522 (709)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 333344999999999999999999876
No 489
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.87 E-value=0.0062 Score=56.19 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=22.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhCC
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKMGI 175 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~elg~ 175 (465)
+.++|.||+|+|||++++.++.....
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCcc
Confidence 46899999999999999999997644
No 490
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=95.84 E-value=0.0099 Score=55.74 Aligned_cols=27 Identities=22% Similarity=0.177 Sum_probs=24.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhCCc
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKMGIN 176 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~elg~~ 176 (465)
..++|.||+|+|||+++++++..++..
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~~~ 30 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFSAK 30 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCE
Confidence 468899999999999999999998763
No 491
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=95.84 E-value=0.34 Score=51.73 Aligned_cols=84 Identities=13% Similarity=0.233 Sum_probs=42.4
Q ss_pred ChhHHHHHhcCCCch--hhHHH-HHHHhh-hhHHHHHHHHHhhcCccchhhhhcCcCCCCCCCCCccCHHHHHHHHHHHH
Q 012383 317 ADDDIVKLVDTFPGQ--SIDFF-GALRAR-VYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIV 392 (465)
Q Consensus 317 ~~~~la~lt~gfsga--dld~~-~alra~-~~~~~v~~~i~~~~~e~l~~~lv~~~~~~~~f~~~~~~~~~lle~g~~lv 392 (465)
+..++....+.+.|. ||+++ ..+++- ...+++.+.|.+. .+.|.+..+... ...-.....+.++.-.-...|
T Consensus 257 ~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI~qs-a~eI~k~fl~~~--~~~~~~~~Wt~~QaW~LIk~L- 332 (431)
T PF10443_consen 257 DLAELDECIEPLGGRLTDLEFLVRRIKSGESPEEAVEEIISQS-ASEIRKMFLLDD--SDDAKSLKWTREQAWYLIKLL- 332 (431)
T ss_pred chHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHH-HHHHHHHHhcCC--CCcccCCCCCHHHHHHHHHHh-
Confidence 445788888888887 66654 233331 2344555555543 333444444311 111123345556655555555
Q ss_pred HHhhhhhhhhhH
Q 012383 393 QEQENVKRVQLA 404 (465)
Q Consensus 393 ~eqe~v~~~~l~ 404 (465)
.+++.+.+-++.
T Consensus 333 s~~~~v~Y~~ll 344 (431)
T PF10443_consen 333 SKNDEVPYNELL 344 (431)
T ss_pred ccCCcCcHHHHH
Confidence 555555554443
No 492
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.84 E-value=0.033 Score=60.49 Aligned_cols=83 Identities=18% Similarity=0.136 Sum_probs=51.9
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHHHH---hCCceEEecccccccC------CCC-----------------Ch-HHH
Q 012383 144 PNIKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELESG------NAG-----------------EP-AKL 196 (465)
Q Consensus 144 ~~~~~p~glLL~GPPGtGKT~LAraIA~e---lg~~~i~vs~s~L~s~------~~G-----------------e~-~k~ 196 (465)
.|+.....+|++||||+|||+++..++.+ .|.+.++++..+-.+. -.| .+ ...
T Consensus 268 GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~ 347 (509)
T PRK09302 268 GGFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEKMEEKGLLKIICARPESYG 347 (509)
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHHHhhcCCceeecCCcccCC
Confidence 37777788999999999999999988765 3666666654321100 000 00 001
Q ss_pred HHHHHHHHHHHHHhCCceEEEecccccccC
Q 012383 197 IRQRYREAADIIKKGKMCCLMINDLDAGAG 226 (465)
Q Consensus 197 Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~ 226 (465)
+...+....+.+...++.+|+||-|-.+..
T Consensus 348 ~~~~~~~i~~~i~~~~~~~vVIDslt~l~~ 377 (509)
T PRK09302 348 LEDHLIIIKREIEEFKPSRVAIDPLSALAR 377 (509)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 122233333445677889999999987754
No 493
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.83 E-value=0.12 Score=50.39 Aligned_cols=26 Identities=23% Similarity=-0.005 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~e 172 (465)
...+.++|+||.|+|||++.+.|+.-
T Consensus 28 ~~~~~~~l~G~n~~GKstll~~i~~~ 53 (222)
T cd03285 28 GKSRFLIITGPNMGGKSTYIRQIGVI 53 (222)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHHH
Confidence 34568999999999999999987754
No 494
>PRK00023 cmk cytidylate kinase; Provisional
Probab=95.83 E-value=0.0089 Score=58.28 Aligned_cols=31 Identities=23% Similarity=0.445 Sum_probs=27.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHhCCceEE
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~elg~~~i~ 179 (465)
+..|.+.||||||||++++.||+++|++++.
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~~~~~~ 34 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLGFHYLD 34 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 3578999999999999999999999987765
No 495
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.82 E-value=0.0084 Score=57.10 Aligned_cols=28 Identities=25% Similarity=0.287 Sum_probs=23.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh-CCceEE
Q 012383 152 LGIWGGKGQGKSFQCELVFAKM-GINPIM 179 (465)
Q Consensus 152 lLL~GPPGtGKT~LAraIA~el-g~~~i~ 179 (465)
|.+.|+||||||++|+.++..+ ++.++.
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~~~~~~i~ 30 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRILPNCCVIH 30 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeEEc
Confidence 6788999999999999999998 454443
No 496
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=95.81 E-value=0.024 Score=59.01 Aligned_cols=103 Identities=16% Similarity=0.209 Sum_probs=62.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCceEEecccccccC---------CCCChHHHHHHHHHHHHHHHHhCCceEEEec
Q 012383 152 LGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG---------NAGEPAKLIRQRYREAADIIKKGKMCCLMIN 219 (465)
Q Consensus 152 lLL~GPPGtGKT~LAraIA~el---g~~~i~vs~s~L~s~---------~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfID 219 (465)
+||.|..||||-++|++.-... ..+|+.+++..+-+. -.|..++. ..|+.| .-.-+|+|
T Consensus 230 LLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~aEsElFG~apg~~gk~--GffE~A-------ngGTVlLD 300 (511)
T COG3283 230 LLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAAESELFGHAPGDEGKK--GFFEQA-------NGGTVLLD 300 (511)
T ss_pred eEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchhHhHHHHhcCCCCCCCcc--chhhhc-------cCCeEEee
Confidence 8999999999999999876653 458888888765221 22222222 456665 33578999
Q ss_pred ccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC
Q 012383 220 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF 278 (465)
Q Consensus 220 EIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~ 278 (465)
||-.+. -.++.-|+..+++-+.....+. .+-.-+|-||+||..+
T Consensus 301 eIgEmS-------------p~lQaKLLRFL~DGtFRRVGee--~Ev~vdVRVIcatq~n 344 (511)
T COG3283 301 EIGEMS-------------PRLQAKLLRFLNDGTFRRVGED--HEVHVDVRVICATQVN 344 (511)
T ss_pred hhhhcC-------------HHHHHHHHHHhcCCceeecCCc--ceEEEEEEEEeccccc
Confidence 994332 3344556666663322221111 1123578899999754
No 497
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=95.79 E-value=0.011 Score=67.06 Aligned_cols=72 Identities=15% Similarity=0.174 Sum_probs=42.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh---C--CceEEecccc----cccCCCCChHHHHHHHHHHHHHH-----HH-hCCce
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKM---G--INPIMMSAGE----LESGNAGEPAKLIRQRYREAADI-----IK-KGKMC 214 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~el---g--~~~i~vs~s~----L~s~~~Ge~~k~Ir~~F~~A~~~-----i~-~~~p~ 214 (465)
+.++|.|+||||||++++++...+ + ..++.+..+. -+....|.....|+.++...... .. .....
T Consensus 339 ~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~ 418 (720)
T TIGR01448 339 KVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCD 418 (720)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCC
Confidence 478999999999999999886654 4 3444433221 12223344445555555432100 01 23467
Q ss_pred EEEeccc
Q 012383 215 CLMINDL 221 (465)
Q Consensus 215 ILfIDEI 221 (465)
+|+|||.
T Consensus 419 llIvDEa 425 (720)
T TIGR01448 419 LLIVDES 425 (720)
T ss_pred EEEEecc
Confidence 9999998
No 498
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=95.77 E-value=0.014 Score=64.09 Aligned_cols=42 Identities=19% Similarity=0.006 Sum_probs=33.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCCh
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEP 193 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge~ 193 (465)
.-|.|.|.||||||++++.+|+.+|++|+.++. ++.+..|.+
T Consensus 7 ~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~--~ie~~~g~s 48 (542)
T PRK14021 7 PQAVIIGMMGAGKTRVGKEVAQMMRLPFADADV--EIEREIGMS 48 (542)
T ss_pred ccEEEECCCCCCHHHHHHHHHHHhCCCEEEchH--HHHHHHCcC
Confidence 357788999999999999999999999998774 333333543
No 499
>PLN02165 adenylate isopentenyltransferase
Probab=95.75 E-value=0.011 Score=61.05 Aligned_cols=33 Identities=21% Similarity=0.178 Sum_probs=28.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHhCCceEEec
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 181 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs 181 (465)
...++|.||+|+|||+||..+|..++..++..+
T Consensus 43 g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaD 75 (334)
T PLN02165 43 DKVVVIMGATGSGKSRLSVDLATRFPSEIINSD 75 (334)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHcCCceecCC
Confidence 447899999999999999999999987666644
No 500
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.75 E-value=0.015 Score=55.98 Aligned_cols=39 Identities=23% Similarity=0.302 Sum_probs=30.4
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHHHH---hCCceEEecc
Q 012383 144 PNIKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSA 182 (465)
Q Consensus 144 ~~~~~p~glLL~GPPGtGKT~LAraIA~e---lg~~~i~vs~ 182 (465)
.|++....++|+||||+|||+++..++.+ .|...+.++.
T Consensus 15 GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 15 GGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 47777889999999999999999987654 2555666654
Done!