Query 012383
Match_columns 465
No_of_seqs 465 out of 2609
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 08:23:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012383.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012383hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t15_A Ribulose bisphosphate c 100.0 7.1E-54 2.4E-58 426.9 24.5 292 114-405 1-292 (293)
2 4b4t_J 26S protease regulatory 100.0 2.3E-41 8E-46 351.0 23.4 208 114-335 146-360 (405)
3 4b4t_I 26S protease regulatory 100.0 2.6E-40 9E-45 344.8 21.7 208 114-335 180-394 (437)
4 4b4t_H 26S protease regulatory 100.0 7.3E-40 2.5E-44 344.2 22.8 209 113-335 206-421 (467)
5 4b4t_L 26S protease subunit RP 100.0 8.4E-40 2.9E-44 343.1 22.9 208 114-335 179-393 (437)
6 4b4t_M 26S protease regulatory 100.0 6.7E-40 2.3E-44 343.6 19.9 208 114-335 179-393 (434)
7 4b4t_K 26S protease regulatory 100.0 8.6E-39 3E-43 334.8 17.3 206 114-335 170-385 (428)
8 3cf2_A TER ATPase, transitiona 100.0 8.7E-38 3E-42 348.4 6.1 192 143-353 505-704 (806)
9 3cf2_A TER ATPase, transitiona 100.0 1.3E-35 4.3E-40 331.0 20.3 221 113-353 201-428 (806)
10 1xwi_A SKD1 protein; VPS4B, AA 100.0 3E-29 1E-33 252.7 23.3 221 113-354 9-237 (322)
11 3eie_A Vacuolar protein sortin 100.0 2.4E-29 8.1E-34 252.4 21.2 224 111-355 13-243 (322)
12 2ce7_A Cell division protein F 100.0 1.6E-29 5.3E-34 268.1 16.7 206 112-335 12-227 (476)
13 3cf0_A Transitional endoplasmi 100.0 1.7E-29 5.7E-34 251.5 15.8 208 112-335 11-227 (301)
14 2x8a_A Nuclear valosin-contain 100.0 4.5E-29 1.5E-33 246.4 17.9 205 114-335 8-224 (274)
15 2qp9_X Vacuolar protein sortin 100.0 3.7E-28 1.3E-32 247.8 22.6 220 113-353 48-274 (355)
16 3h4m_A Proteasome-activating n 100.0 4.2E-27 1.4E-31 229.8 21.3 210 112-335 13-229 (285)
17 1lv7_A FTSH; alpha/beta domain 100.0 6.5E-27 2.2E-31 226.0 22.0 208 111-335 7-223 (257)
18 2zan_A Vacuolar protein sortin 100.0 1.5E-27 5.2E-32 250.3 18.4 223 111-354 129-359 (444)
19 2qz4_A Paraplegin; AAA+, SPG7, 99.9 9.5E-28 3.2E-32 230.5 14.7 175 144-334 34-219 (262)
20 2dhr_A FTSH; AAA+ protein, hex 99.9 5E-28 1.7E-32 258.0 14.0 207 111-335 26-242 (499)
21 3hu3_A Transitional endoplasmi 99.9 1.7E-26 5.8E-31 245.7 17.5 175 144-335 233-413 (489)
22 1ixz_A ATP-dependent metallopr 99.9 9.9E-26 3.4E-30 217.4 16.5 208 111-335 11-227 (254)
23 3b9p_A CG5977-PA, isoform A; A 99.9 2.6E-25 9E-30 218.5 17.4 208 112-335 17-231 (297)
24 3d8b_A Fidgetin-like protein 1 99.9 3.4E-25 1.2E-29 225.8 17.8 207 112-335 80-293 (357)
25 2r62_A Cell division protease 99.9 5.7E-27 1.9E-31 227.2 4.3 207 112-334 7-223 (268)
26 3vfd_A Spastin; ATPase, microt 99.9 5.3E-25 1.8E-29 226.3 17.9 208 111-335 110-324 (389)
27 1ypw_A Transitional endoplasmi 99.9 2.4E-27 8.2E-32 265.7 0.4 176 144-335 506-689 (806)
28 1iy2_A ATP-dependent metallopr 99.9 1.4E-24 4.9E-29 212.7 17.8 207 111-334 35-250 (278)
29 3thg_A Ribulose bisphosphate c 99.9 5.5E-24 1.9E-28 179.3 9.0 104 297-400 4-107 (107)
30 1ypw_A Transitional endoplasmi 99.9 2.8E-22 9.4E-27 224.8 23.4 208 111-335 199-413 (806)
31 2c9o_A RUVB-like 1; hexameric 99.8 1.3E-23 4.3E-28 220.9 -4.5 174 144-334 58-257 (456)
32 1d2n_A N-ethylmaleimide-sensit 99.8 4E-19 1.4E-23 172.9 13.3 169 139-328 54-229 (272)
33 3syl_A Protein CBBX; photosynt 99.8 4.9E-18 1.7E-22 167.1 18.8 150 146-321 64-229 (309)
34 3m6a_A ATP-dependent protease 99.7 1.9E-17 6.5E-22 178.0 15.9 167 148-330 107-297 (543)
35 1g41_A Heat shock protein HSLU 99.7 6.2E-18 2.1E-22 177.7 9.6 135 147-307 48-188 (444)
36 1ofh_A ATP-dependent HSL prote 99.7 6.1E-17 2.1E-21 158.3 13.5 157 147-309 48-213 (310)
37 1jbk_A CLPB protein; beta barr 99.7 7.7E-17 2.6E-21 144.6 10.3 136 147-307 41-194 (195)
38 3hws_A ATP-dependent CLP prote 99.7 1.6E-17 5.4E-22 168.7 6.3 160 147-309 49-267 (363)
39 3uk6_A RUVB-like 2; hexameric 99.7 1.1E-15 3.9E-20 153.8 18.9 147 145-319 66-282 (368)
40 3pfi_A Holliday junction ATP-d 99.6 6E-15 2E-19 147.2 19.5 157 147-330 53-218 (338)
41 2p65_A Hypothetical protein PF 99.6 2.8E-15 9.6E-20 134.6 11.1 127 147-299 41-187 (187)
42 1l8q_A Chromosomal replication 99.6 3.2E-15 1.1E-19 148.9 12.6 181 112-328 7-198 (324)
43 3u61_B DNA polymerase accessor 99.6 2.9E-14 1E-18 141.6 16.2 152 114-310 24-177 (324)
44 1hqc_A RUVB; extended AAA-ATPa 99.6 3.1E-14 1.1E-18 140.6 15.8 155 147-327 36-199 (324)
45 3pvs_A Replication-associated 99.6 2.8E-14 9.7E-19 150.0 16.3 127 150-313 51-180 (447)
46 3pxg_A Negative regulator of g 99.6 2.5E-14 8.5E-19 150.9 14.7 143 148-331 200-367 (468)
47 4fcw_A Chaperone protein CLPB; 99.5 1E-13 3.5E-18 136.0 17.3 158 148-328 46-258 (311)
48 1um8_A ATP-dependent CLP prote 99.5 2.5E-14 8.6E-19 145.6 12.5 139 147-287 70-220 (376)
49 1r6b_X CLPA protein; AAA+, N-t 99.5 8.9E-14 3.1E-18 154.1 17.7 140 148-312 206-363 (758)
50 2z4s_A Chromosomal replication 99.5 1.6E-14 5.6E-19 151.3 11.1 183 111-330 100-297 (440)
51 1qvr_A CLPB protein; coiled co 99.5 3.1E-14 1.1E-18 160.3 13.8 156 148-329 190-372 (854)
52 2chg_A Replication factor C sm 99.5 3E-13 1E-17 123.9 16.5 142 151-326 40-191 (226)
53 3pxi_A Negative regulator of g 99.5 9.2E-14 3.2E-18 154.3 14.7 126 147-313 199-340 (758)
54 3pxi_A Negative regulator of g 99.5 5.6E-13 1.9E-17 148.1 17.7 137 151-312 523-676 (758)
55 1sxj_A Activator 1 95 kDa subu 99.5 6.4E-14 2.2E-18 149.3 9.7 154 147-328 75-241 (516)
56 1r6b_X CLPA protein; AAA+, N-t 99.5 2.6E-13 8.9E-18 150.4 14.5 144 148-312 487-667 (758)
57 2qby_B CDC6 homolog 3, cell di 99.5 4.4E-13 1.5E-17 135.0 14.8 152 147-330 43-236 (384)
58 3te6_A Regulatory protein SIR3 99.5 3.4E-13 1.1E-17 136.2 13.4 137 147-312 43-212 (318)
59 1njg_A DNA polymerase III subu 99.4 1.1E-12 3.9E-17 121.0 13.3 147 148-322 44-211 (250)
60 2v1u_A Cell division control p 99.4 1.1E-12 3.8E-17 131.3 13.9 154 147-326 42-236 (387)
61 2chq_A Replication factor C sm 99.4 2.8E-12 9.6E-17 125.4 16.3 159 135-330 27-195 (319)
62 1sxj_B Activator 1 37 kDa subu 99.4 2.9E-12 9.9E-17 125.5 15.4 147 148-329 42-202 (323)
63 3bos_A Putative DNA replicatio 99.4 2E-12 6.8E-17 120.8 12.7 155 135-330 41-208 (242)
64 1sxj_D Activator 1 41 kDa subu 99.4 2.2E-12 7.6E-17 128.4 13.7 141 151-325 60-221 (353)
65 1g8p_A Magnesium-chelatase 38 99.4 7.2E-13 2.5E-17 131.9 8.3 146 150-311 46-232 (350)
66 1iqp_A RFCS; clamp loader, ext 99.3 1.3E-11 4.4E-16 121.1 15.4 141 151-325 48-198 (327)
67 1qvr_A CLPB protein; coiled co 99.3 1.2E-11 4.1E-16 139.3 16.2 144 149-312 588-771 (854)
68 2r44_A Uncharacterized protein 99.3 7.3E-12 2.5E-16 124.8 11.8 138 150-313 47-200 (331)
69 2qby_A CDC6 homolog 1, cell di 99.3 3.8E-11 1.3E-15 119.8 15.8 154 147-326 43-232 (386)
70 2bjv_A PSP operon transcriptio 99.3 1.7E-12 6E-17 125.3 5.7 133 149-304 29-183 (265)
71 1in4_A RUVB, holliday junction 99.3 1.2E-10 4E-15 117.3 18.7 157 147-330 49-214 (334)
72 1jr3_A DNA polymerase III subu 99.3 7.3E-11 2.5E-15 118.2 17.0 144 147-324 36-206 (373)
73 1a5t_A Delta prime, HOLB; zinc 99.3 2.6E-11 8.8E-16 122.0 13.1 150 147-330 22-199 (334)
74 3n70_A Transport activator; si 99.3 1.1E-11 3.8E-16 109.8 9.1 91 148-278 23-116 (145)
75 3ec2_A DNA replication protein 99.3 2.8E-12 9.5E-17 116.8 5.3 102 110-224 4-112 (180)
76 1sxj_E Activator 1 40 kDa subu 99.3 1.3E-10 4.4E-15 116.1 17.7 148 133-315 22-210 (354)
77 1fnn_A CDC6P, cell division co 99.3 4.6E-11 1.6E-15 120.0 14.2 150 150-326 45-228 (389)
78 3f9v_A Minichromosome maintena 99.2 2.5E-12 8.4E-17 139.8 4.2 138 151-313 329-492 (595)
79 4akg_A Glutathione S-transfera 99.2 1E-11 3.5E-16 152.9 9.6 143 149-312 1267-1432(2695)
80 1sxj_C Activator 1 40 kDa subu 99.2 5.8E-11 2E-15 119.1 12.8 145 134-315 34-186 (340)
81 3nbx_X ATPase RAVA; AAA+ ATPas 99.2 3.6E-11 1.2E-15 128.2 10.1 140 150-312 42-197 (500)
82 3co5_A Putative two-component 99.2 7.3E-12 2.5E-16 110.9 3.9 90 149-278 27-116 (143)
83 1ojl_A Transcriptional regulat 99.2 9.1E-11 3.1E-15 116.9 10.9 158 148-330 24-219 (304)
84 2gno_A DNA polymerase III, gam 99.1 5E-10 1.7E-14 112.0 13.6 140 135-311 7-152 (305)
85 2w58_A DNAI, primosome compone 99.1 3.9E-10 1.3E-14 104.1 10.5 107 108-225 17-128 (202)
86 3cmw_A Protein RECA, recombina 99.1 7.3E-11 2.5E-15 140.3 6.5 115 148-279 1079-1219(1706)
87 2vhj_A Ntpase P4, P4; non- hyd 99.0 4.2E-10 1.4E-14 113.8 7.0 124 144-286 118-243 (331)
88 2qgz_A Helicase loader, putati 99.0 4.1E-10 1.4E-14 112.6 6.5 103 111-224 119-226 (308)
89 1w5s_A Origin recognition comp 98.9 1E-08 3.5E-13 103.8 11.8 157 148-326 49-250 (412)
90 2kjq_A DNAA-related protein; s 98.8 5.3E-09 1.8E-13 93.7 6.5 58 148-224 35-95 (149)
91 1svm_A Large T antigen; AAA+ f 98.8 1.1E-08 3.7E-13 105.5 9.0 120 144-299 164-284 (377)
92 1tue_A Replication protein E1; 98.8 1.2E-08 4E-13 97.1 8.1 128 134-296 45-176 (212)
93 2r2a_A Uncharacterized protein 98.6 8.6E-08 3E-12 90.2 9.0 122 148-296 4-149 (199)
94 3cmu_A Protein RECA, recombina 98.5 1.4E-07 4.7E-12 113.8 9.9 102 145-250 1423-1548(2050)
95 3k1j_A LON protease, ATP-depen 98.5 8.3E-08 2.8E-12 104.1 6.3 26 150-175 61-86 (604)
96 2qen_A Walker-type ATPase; unk 98.4 2.2E-06 7.5E-11 84.2 13.8 157 150-330 32-240 (350)
97 4akg_A Glutathione S-transfera 98.4 9E-07 3.1E-11 109.6 12.9 140 149-307 645-789 (2695)
98 2fna_A Conserved hypothetical 98.4 8.8E-06 3E-10 79.9 17.5 35 150-184 31-65 (357)
99 3vkg_A Dynein heavy chain, cyt 98.4 2.2E-07 7.4E-12 116.0 6.2 142 149-311 1304-1469(3245)
100 1u0j_A DNA replication protein 98.3 1.6E-06 5.6E-11 85.3 10.0 41 134-175 90-130 (267)
101 2cvh_A DNA repair and recombin 98.1 2.2E-05 7.6E-10 72.3 11.6 41 144-184 15-55 (220)
102 1ny5_A Transcriptional regulat 98.0 6.3E-06 2.1E-10 84.6 7.0 106 150-278 161-282 (387)
103 1ye8_A Protein THEP1, hypothet 97.9 8.5E-05 2.9E-09 68.1 12.5 27 151-177 2-28 (178)
104 3cmu_A Protein RECA, recombina 97.9 1.2E-05 4.3E-10 97.1 8.7 82 145-226 728-824 (2050)
105 3hr8_A Protein RECA; alpha and 97.9 3.1E-05 1.1E-09 79.1 9.6 83 144-226 56-153 (356)
106 1qhx_A CPT, protein (chloramph 97.9 2E-05 7E-10 70.5 7.2 35 149-183 3-37 (178)
107 3dzd_A Transcriptional regulat 97.8 3.2E-05 1.1E-09 78.9 8.7 105 150-277 153-272 (368)
108 2zr9_A Protein RECA, recombina 97.8 3.6E-05 1.2E-09 78.2 8.6 83 144-226 56-153 (349)
109 3f8t_A Predicted ATPase involv 97.8 6.7E-06 2.3E-10 87.0 3.3 124 151-302 241-385 (506)
110 1xp8_A RECA protein, recombina 97.8 6.9E-05 2.4E-09 76.7 10.5 83 144-226 69-166 (366)
111 3vkg_A Dynein heavy chain, cyt 97.8 0.0001 3.4E-09 92.6 12.8 139 150-307 605-749 (3245)
112 2w0m_A SSO2452; RECA, SSPF, un 97.8 0.00015 5E-09 66.9 10.9 37 145-181 19-58 (235)
113 2p5t_B PEZT; postsegregational 97.7 0.00018 6E-09 69.1 11.4 56 130-185 12-68 (253)
114 1u94_A RECA protein, recombina 97.7 3.3E-05 1.1E-09 78.8 6.4 83 144-226 58-155 (356)
115 3cmw_A Protein RECA, recombina 97.7 3.8E-05 1.3E-09 91.8 7.8 82 145-226 728-824 (1706)
116 1n0w_A DNA repair protein RAD5 97.7 8.5E-05 2.9E-09 69.4 8.3 84 144-227 19-134 (243)
117 1gvn_B Zeta; postsegregational 97.7 7.4E-05 2.5E-09 73.6 8.1 63 124-186 7-70 (287)
118 3trf_A Shikimate kinase, SK; a 97.6 3.8E-05 1.3E-09 69.2 4.6 33 149-181 5-37 (185)
119 2rhm_A Putative kinase; P-loop 97.6 5.4E-05 1.8E-09 68.3 5.4 35 145-179 1-35 (193)
120 3a4m_A L-seryl-tRNA(SEC) kinas 97.6 0.00018 6E-09 69.5 8.7 71 148-220 3-79 (260)
121 1jr3_D DNA polymerase III, del 97.5 0.00069 2.3E-08 67.4 12.9 147 147-330 16-176 (343)
122 2ehv_A Hypothetical protein PH 97.5 0.0003 1E-08 65.8 9.6 26 145-170 26-51 (251)
123 3io5_A Recombination and repai 97.5 0.00017 5.8E-09 72.8 8.1 83 144-227 24-126 (333)
124 1pzn_A RAD51, DNA repair and r 97.5 0.00026 9E-09 71.6 9.4 82 144-225 126-244 (349)
125 3vaa_A Shikimate kinase, SK; s 97.5 7.1E-05 2.4E-09 68.9 4.7 36 146-181 22-57 (199)
126 3lda_A DNA repair protein RAD5 97.5 0.00023 7.8E-09 73.7 8.9 84 144-227 173-288 (400)
127 3iij_A Coilin-interacting nucl 97.5 8.5E-05 2.9E-09 66.8 4.6 34 147-180 9-42 (180)
128 2z43_A DNA repair and recombin 97.4 0.00021 7.3E-09 71.2 7.6 83 144-226 102-217 (324)
129 1g5t_A COB(I)alamin adenosyltr 97.4 0.00026 9E-09 66.5 7.6 110 151-286 30-168 (196)
130 3kw6_A 26S protease regulatory 97.4 0.00042 1.4E-08 54.9 7.7 39 297-335 2-44 (78)
131 2dr3_A UPF0273 protein PH0284; 97.4 0.00064 2.2E-08 63.4 10.2 38 144-181 18-58 (247)
132 1tev_A UMP-CMP kinase; ploop, 97.4 0.00011 3.8E-09 66.0 4.4 31 149-179 3-33 (196)
133 2cdn_A Adenylate kinase; phosp 97.4 0.00014 4.6E-09 66.8 5.1 35 146-180 17-51 (201)
134 3umf_A Adenylate kinase; rossm 97.4 0.00014 4.6E-09 69.3 5.2 41 144-186 24-64 (217)
135 2i1q_A DNA repair and recombin 97.4 0.00024 8.2E-09 70.4 7.1 29 144-172 93-121 (322)
136 2krk_A 26S protease regulatory 97.4 0.00054 1.8E-08 55.8 7.9 39 297-335 10-52 (86)
137 4a74_A DNA repair and recombin 97.4 0.00041 1.4E-08 64.0 8.1 30 144-173 20-49 (231)
138 3kb2_A SPBC2 prophage-derived 97.3 0.00016 5.3E-09 63.8 4.8 31 151-181 3-33 (173)
139 1v5w_A DMC1, meiotic recombina 97.3 0.00044 1.5E-08 69.7 8.7 83 144-226 117-233 (343)
140 2iyv_A Shikimate kinase, SK; t 97.3 0.00012 4.1E-09 66.0 4.0 32 150-181 3-34 (184)
141 2c95_A Adenylate kinase 1; tra 97.3 0.00014 4.7E-09 65.8 4.4 34 148-181 8-41 (196)
142 1aky_A Adenylate kinase; ATP:A 97.3 0.00015 5E-09 67.6 4.5 34 147-180 2-35 (220)
143 1zp6_A Hypothetical protein AT 97.3 0.00014 4.7E-09 65.7 4.2 41 145-185 5-45 (191)
144 1y63_A LMAJ004144AAA protein; 97.3 0.00014 4.7E-09 66.2 4.2 33 149-181 10-43 (184)
145 1qf9_A UMP/CMP kinase, protein 97.3 0.00019 6.5E-09 64.3 4.9 33 148-180 5-37 (194)
146 1zuh_A Shikimate kinase; alpha 97.3 0.00016 5.4E-09 64.3 4.4 32 150-181 8-39 (168)
147 1kag_A SKI, shikimate kinase I 97.3 0.00017 5.7E-09 64.1 4.4 31 149-179 4-34 (173)
148 1via_A Shikimate kinase; struc 97.3 0.00015 5.1E-09 65.0 3.9 30 151-180 6-35 (175)
149 1ly1_A Polynucleotide kinase; 97.3 0.00014 4.6E-09 64.7 3.6 30 149-178 2-32 (181)
150 2bwj_A Adenylate kinase 5; pho 97.3 0.00018 6E-09 65.2 4.1 32 149-180 12-43 (199)
151 2zts_A Putative uncharacterize 97.3 0.00047 1.6E-08 64.3 7.2 37 145-181 26-66 (251)
152 3lw7_A Adenylate kinase relate 97.3 0.00018 6.1E-09 63.0 4.0 30 150-180 2-31 (179)
153 1zd8_A GTP:AMP phosphotransfer 97.2 0.00017 5.8E-09 67.6 4.0 34 147-180 5-38 (227)
154 1ukz_A Uridylate kinase; trans 97.2 0.00022 7.5E-09 65.2 4.6 35 147-181 13-47 (203)
155 3cm0_A Adenylate kinase; ATP-b 97.2 0.0002 6.7E-09 64.4 4.2 31 149-179 4-34 (186)
156 2vli_A Antibiotic resistance p 97.2 0.00015 5.2E-09 64.9 3.4 30 149-178 5-34 (183)
157 1z6t_A APAF-1, apoptotic prote 97.2 0.0036 1.2E-07 66.6 14.4 24 148-171 146-169 (591)
158 3t61_A Gluconokinase; PSI-biol 97.2 0.00025 8.6E-09 65.0 4.7 32 149-180 18-49 (202)
159 3tlx_A Adenylate kinase 2; str 97.2 0.00024 8.3E-09 67.9 4.7 34 147-180 27-60 (243)
160 1kht_A Adenylate kinase; phosp 97.2 0.00019 6.6E-09 64.3 3.6 26 149-174 3-28 (192)
161 2r6a_A DNAB helicase, replicat 97.2 0.0015 5.1E-08 68.1 10.9 38 144-181 198-239 (454)
162 1e6c_A Shikimate kinase; phosp 97.2 0.00023 7.7E-09 63.1 3.9 31 150-180 3-33 (173)
163 1ak2_A Adenylate kinase isoenz 97.1 0.00029 1E-08 66.4 4.6 33 148-180 15-47 (233)
164 2ze6_A Isopentenyl transferase 97.1 0.00037 1.3E-08 67.1 4.9 33 150-182 2-34 (253)
165 3dl0_A Adenylate kinase; phosp 97.1 0.0003 1E-08 65.1 4.1 30 151-180 2-31 (216)
166 3be4_A Adenylate kinase; malar 97.1 0.00028 9.5E-09 65.9 3.8 32 149-180 5-36 (217)
167 3fb4_A Adenylate kinase; psych 97.1 0.00032 1.1E-08 64.7 4.2 30 151-180 2-31 (216)
168 2pt5_A Shikimate kinase, SK; a 97.1 0.00038 1.3E-08 61.4 4.4 30 151-180 2-31 (168)
169 2bbw_A Adenylate kinase 4, AK4 97.1 0.00044 1.5E-08 65.6 4.9 42 137-179 16-57 (246)
170 1zak_A Adenylate kinase; ATP:A 97.1 0.00023 7.9E-09 66.3 2.9 32 148-179 4-35 (222)
171 1knq_A Gluconate kinase; ALFA/ 97.1 0.00051 1.7E-08 61.3 5.0 31 149-179 8-38 (175)
172 2q6t_A DNAB replication FORK h 97.0 0.0025 8.5E-08 66.3 10.9 39 144-182 195-237 (444)
173 4eun_A Thermoresistant glucoki 97.0 0.00047 1.6E-08 63.4 4.9 33 147-179 27-59 (200)
174 2pez_A Bifunctional 3'-phospho 97.0 0.00055 1.9E-08 61.5 4.8 39 147-185 3-44 (179)
175 2b8t_A Thymidine kinase; deoxy 97.0 0.00063 2.2E-08 65.0 5.4 73 150-223 13-100 (223)
176 1g41_A Heat shock protein HSLU 97.0 0.0018 6E-08 68.0 9.0 89 213-308 251-346 (444)
177 3uie_A Adenylyl-sulfate kinase 97.0 0.002 6.9E-08 59.1 8.4 39 147-185 23-64 (200)
178 3sr0_A Adenylate kinase; phosp 97.0 0.00049 1.7E-08 64.7 4.3 33 151-185 2-34 (206)
179 1cke_A CK, MSSA, protein (cyti 97.0 0.00062 2.1E-08 63.1 4.9 31 149-179 5-35 (227)
180 3crm_A TRNA delta(2)-isopenten 96.9 0.0029 9.9E-08 63.7 9.8 35 149-183 5-39 (323)
181 2v54_A DTMP kinase, thymidylat 96.9 0.00062 2.1E-08 61.9 4.4 34 148-181 3-37 (204)
182 2r8r_A Sensor protein; KDPD, P 96.9 0.0014 4.8E-08 62.9 7.0 32 150-181 7-41 (228)
183 1e4v_A Adenylate kinase; trans 96.9 0.00055 1.9E-08 63.5 4.0 30 151-180 2-31 (214)
184 2pbr_A DTMP kinase, thymidylat 96.9 0.00083 2.8E-08 60.3 5.0 31 151-181 2-35 (195)
185 1vma_A Cell division protein F 96.9 0.0058 2E-07 60.8 11.3 72 146-221 101-195 (306)
186 2yvu_A Probable adenylyl-sulfa 96.9 0.004 1.4E-07 56.1 9.4 39 147-185 11-52 (186)
187 3sfz_A APAF-1, apoptotic pepti 96.8 0.0054 1.9E-07 69.9 12.2 26 147-172 145-170 (1249)
188 1uf9_A TT1252 protein; P-loop, 96.8 0.00084 2.9E-08 60.9 4.5 33 148-181 7-39 (203)
189 1jjv_A Dephospho-COA kinase; P 96.8 0.00084 2.9E-08 61.5 4.4 29 150-179 3-31 (206)
190 1nks_A Adenylate kinase; therm 96.8 0.00056 1.9E-08 61.2 3.0 34 150-183 2-38 (194)
191 2if2_A Dephospho-COA kinase; a 96.8 0.00076 2.6E-08 61.7 3.9 30 151-181 3-32 (204)
192 2jaq_A Deoxyguanosine kinase; 96.8 0.00089 3.1E-08 60.5 4.3 29 151-179 2-30 (205)
193 2ga8_A Hypothetical 39.9 kDa p 96.8 0.00063 2.2E-08 69.5 3.6 30 150-179 25-54 (359)
194 2z0h_A DTMP kinase, thymidylat 96.8 0.001 3.5E-08 60.0 4.6 31 151-181 2-35 (197)
195 2plr_A DTMP kinase, probable t 96.8 0.00097 3.3E-08 60.7 4.4 28 149-176 4-31 (213)
196 3ake_A Cytidylate kinase; CMP 96.8 0.0012 4E-08 60.2 4.9 31 151-181 4-34 (208)
197 3r20_A Cytidylate kinase; stru 96.7 0.001 3.6E-08 63.9 4.7 32 148-179 8-39 (233)
198 2xb4_A Adenylate kinase; ATP-b 96.7 0.00094 3.2E-08 62.6 4.3 30 151-180 2-31 (223)
199 2wwf_A Thymidilate kinase, put 96.7 0.00051 1.8E-08 62.8 2.4 30 147-176 8-37 (212)
200 2qt1_A Nicotinamide riboside k 96.7 0.00096 3.3E-08 61.3 4.0 38 144-181 16-54 (207)
201 1uj2_A Uridine-cytidine kinase 96.7 0.0015 5.2E-08 62.2 5.5 41 147-187 20-68 (252)
202 1m7g_A Adenylylsulfate kinase; 96.7 0.0031 1.1E-07 58.3 7.4 40 147-186 23-66 (211)
203 2fz4_A DNA repair protein RAD2 96.7 0.0037 1.3E-07 59.3 8.0 33 151-183 110-142 (237)
204 2orw_A Thymidine kinase; TMTK, 96.7 0.00053 1.8E-08 63.0 2.0 31 150-180 4-37 (184)
205 1nn5_A Similar to deoxythymidy 96.7 0.00064 2.2E-08 62.2 2.4 29 147-175 7-35 (215)
206 2eyu_A Twitching motility prot 96.7 0.00085 2.9E-08 65.2 3.3 28 146-173 22-49 (261)
207 3jvv_A Twitching mobility prot 96.6 0.0021 7.2E-08 65.4 6.3 68 150-221 124-205 (356)
208 1vht_A Dephospho-COA kinase; s 96.6 0.0016 5.5E-08 60.3 4.9 32 148-180 3-34 (218)
209 3dm5_A SRP54, signal recogniti 96.6 0.0054 1.8E-07 64.3 9.2 70 148-221 99-191 (443)
210 3bh0_A DNAB-like replicative h 96.6 0.0066 2.3E-07 60.2 9.4 38 144-181 63-103 (315)
211 2axn_A 6-phosphofructo-2-kinas 96.6 0.0031 1.1E-07 67.2 7.4 38 148-185 34-74 (520)
212 3zvl_A Bifunctional polynucleo 96.6 0.0016 5.6E-08 67.2 5.0 37 147-185 256-292 (416)
213 2h92_A Cytidylate kinase; ross 96.6 0.0014 4.7E-08 60.6 3.9 32 149-180 3-34 (219)
214 4gp7_A Metallophosphoesterase; 96.5 0.0024 8.1E-08 57.4 5.3 22 147-168 7-28 (171)
215 3a8t_A Adenylate isopentenyltr 96.5 0.005 1.7E-07 62.4 8.2 35 148-182 39-73 (339)
216 1q57_A DNA primase/helicase; d 96.5 0.004 1.4E-07 65.6 7.8 38 145-182 238-279 (503)
217 1q3t_A Cytidylate kinase; nucl 96.5 0.0021 7.1E-08 60.6 5.0 34 146-179 13-46 (236)
218 2grj_A Dephospho-COA kinase; T 96.5 0.0015 5.3E-08 60.5 4.0 32 150-181 13-44 (192)
219 1rz3_A Hypothetical protein rb 96.5 0.0048 1.6E-07 56.7 7.2 36 146-181 19-57 (201)
220 4e22_A Cytidylate kinase; P-lo 96.5 0.0022 7.4E-08 61.5 4.9 31 149-179 27-57 (252)
221 3vlf_B 26S protease regulatory 96.5 0.0045 1.5E-07 50.3 6.1 37 299-335 2-42 (88)
222 2f6r_A COA synthase, bifunctio 96.5 0.0018 6.3E-08 63.2 4.4 32 148-180 74-105 (281)
223 3bgw_A DNAB-like replicative h 96.4 0.011 3.8E-07 61.7 10.2 39 144-182 192-233 (444)
224 2iut_A DNA translocase FTSK; n 96.4 0.028 9.6E-07 60.7 13.6 71 214-307 345-419 (574)
225 1ltq_A Polynucleotide kinase; 96.4 0.0018 6.1E-08 62.9 4.0 31 149-179 2-33 (301)
226 3nwj_A ATSK2; P loop, shikimat 96.4 0.0021 7.3E-08 62.1 4.3 33 149-181 48-80 (250)
227 2j41_A Guanylate kinase; GMP, 96.4 0.002 6.8E-08 58.5 3.7 27 147-173 4-30 (207)
228 2ewv_A Twitching motility prot 96.3 0.0028 9.7E-08 64.6 5.1 28 146-173 133-160 (372)
229 3c8u_A Fructokinase; YP_612366 96.3 0.0039 1.3E-07 57.6 5.5 29 146-174 19-47 (208)
230 3asz_A Uridine kinase; cytidin 96.3 0.0027 9.2E-08 58.2 4.1 33 147-179 4-38 (211)
231 2qor_A Guanylate kinase; phosp 96.3 0.0027 9.2E-08 58.4 4.0 28 147-174 10-37 (204)
232 3kl4_A SRP54, signal recogniti 96.2 0.0083 2.8E-07 62.7 8.0 35 148-182 96-133 (433)
233 3foz_A TRNA delta(2)-isopenten 96.1 0.0046 1.6E-07 62.1 5.1 39 147-185 8-46 (316)
234 4a1f_A DNAB helicase, replicat 96.1 0.004 1.4E-07 63.0 4.5 38 144-181 41-81 (338)
235 3fdi_A Uncharacterized protein 96.0 0.0048 1.7E-07 57.3 4.5 30 150-179 7-36 (201)
236 2bdt_A BH3686; alpha-beta prot 96.0 0.005 1.7E-07 55.5 4.5 25 150-174 3-27 (189)
237 2a5y_B CED-4; apoptosis; HET: 96.0 0.018 6.1E-07 61.2 9.4 24 148-171 151-174 (549)
238 3tau_A Guanylate kinase, GMP k 96.0 0.0041 1.4E-07 57.6 3.9 28 147-174 6-33 (208)
239 3tr0_A Guanylate kinase, GMP k 96.0 0.0047 1.6E-07 56.0 4.2 33 148-182 6-38 (205)
240 3tqc_A Pantothenate kinase; bi 96.0 0.0094 3.2E-07 59.8 6.6 39 136-174 79-117 (321)
241 1sq5_A Pantothenate kinase; P- 96.0 0.01 3.5E-07 58.6 6.7 38 137-174 68-105 (308)
242 1kgd_A CASK, peripheral plasma 95.9 0.005 1.7E-07 55.6 4.1 26 149-174 5-30 (180)
243 1x6v_B Bifunctional 3'-phospho 95.9 0.021 7.2E-07 62.3 9.3 38 148-185 51-91 (630)
244 3gmt_A Adenylate kinase; ssgci 95.9 0.0056 1.9E-07 58.7 4.3 30 151-180 10-39 (230)
245 3d3q_A TRNA delta(2)-isopenten 95.8 0.0058 2E-07 61.9 4.4 34 149-182 7-40 (340)
246 1tf7_A KAIC; homohexamer, hexa 95.8 0.038 1.3E-06 58.6 10.9 38 145-182 35-76 (525)
247 2j37_W Signal recognition part 95.8 0.023 7.9E-07 60.4 9.1 36 147-182 99-137 (504)
248 1sky_E F1-ATPase, F1-ATP synth 95.8 0.0082 2.8E-07 63.4 5.6 24 150-173 152-175 (473)
249 2jeo_A Uridine-cytidine kinase 95.7 0.0072 2.5E-07 57.3 4.4 32 145-176 21-52 (245)
250 3a00_A Guanylate kinase, GMP k 95.7 0.0055 1.9E-07 55.5 3.4 26 149-174 1-26 (186)
251 3aji_B S6C, proteasome (prosom 95.7 0.013 4.3E-07 46.7 5.1 37 299-335 2-42 (83)
252 3exa_A TRNA delta(2)-isopenten 95.7 0.0082 2.8E-07 60.4 4.8 35 149-183 3-37 (322)
253 2pt7_A CAG-ALFA; ATPase, prote 95.7 0.0096 3.3E-07 59.7 5.2 69 149-222 171-250 (330)
254 2gks_A Bifunctional SAT/APS ki 95.6 0.019 6.6E-07 61.5 7.8 63 122-185 346-411 (546)
255 1odf_A YGR205W, hypothetical 3 95.6 0.017 6E-07 56.8 6.6 30 145-174 27-56 (290)
256 3hdt_A Putative kinase; struct 95.6 0.0091 3.1E-07 56.7 4.4 31 149-179 14-44 (223)
257 3eph_A TRNA isopentenyltransfe 95.5 0.01 3.6E-07 61.5 4.9 34 148-181 1-34 (409)
258 4eaq_A DTMP kinase, thymidylat 95.4 0.012 4E-07 55.7 4.7 34 146-179 23-58 (229)
259 3ice_A Transcription terminati 95.4 0.044 1.5E-06 56.7 9.0 76 149-224 174-273 (422)
260 4f4c_A Multidrug resistance pr 95.4 0.055 1.9E-06 63.8 11.1 30 145-174 440-469 (1321)
261 1g8f_A Sulfate adenylyltransfe 95.3 0.012 4.2E-07 62.7 4.8 54 121-175 368-421 (511)
262 1znw_A Guanylate kinase, GMP k 95.3 0.011 3.7E-07 54.5 3.9 30 145-174 16-45 (207)
263 1lvg_A Guanylate kinase, GMP k 95.3 0.0091 3.1E-07 54.9 3.3 27 148-174 3-29 (198)
264 1nlf_A Regulatory protein REPA 95.3 0.0087 3E-07 57.8 3.2 29 145-173 26-54 (279)
265 2xxa_A Signal recognition part 95.3 0.05 1.7E-06 56.7 9.2 37 147-183 98-138 (433)
266 2qmh_A HPR kinase/phosphorylas 95.2 0.0094 3.2E-07 56.3 3.2 34 149-183 34-67 (205)
267 1m8p_A Sulfate adenylyltransfe 95.2 0.046 1.6E-06 58.9 9.1 39 147-185 394-436 (573)
268 1gtv_A TMK, thymidylate kinase 95.2 0.0065 2.2E-07 55.5 2.0 24 151-174 2-25 (214)
269 1bif_A 6-phosphofructo-2-kinas 95.2 0.029 9.9E-07 58.6 7.2 29 147-175 37-65 (469)
270 1cr0_A DNA primase/helicase; R 95.2 0.012 4.3E-07 57.0 4.0 38 144-181 30-71 (296)
271 3b6e_A Interferon-induced heli 95.2 0.015 5E-07 52.7 4.2 24 150-173 49-72 (216)
272 1j8m_F SRP54, signal recogniti 95.2 0.045 1.5E-06 54.0 8.1 34 149-182 98-134 (297)
273 1z6g_A Guanylate kinase; struc 95.1 0.011 3.9E-07 55.2 3.4 29 145-173 19-47 (218)
274 1htw_A HI0065; nucleotide-bind 95.1 0.017 5.8E-07 51.8 4.4 29 145-173 29-57 (158)
275 1a7j_A Phosphoribulokinase; tr 95.1 0.0086 3E-07 58.9 2.6 37 149-185 5-44 (290)
276 4b3f_X DNA-binding protein smu 95.1 0.015 5E-07 63.3 4.7 33 151-183 207-242 (646)
277 3thx_B DNA mismatch repair pro 95.0 0.094 3.2E-06 59.6 11.2 26 146-171 670-695 (918)
278 2ocp_A DGK, deoxyguanosine kin 95.0 0.017 5.7E-07 54.4 4.3 27 149-175 2-29 (241)
279 1w4r_A Thymidine kinase; type 95.0 0.033 1.1E-06 52.1 6.2 36 148-183 19-57 (195)
280 2ius_A DNA translocase FTSK; n 95.0 0.12 4.2E-06 55.0 11.3 40 267-308 331-374 (512)
281 3e70_C DPA, signal recognition 94.9 0.07 2.4E-06 53.5 8.9 27 147-173 127-153 (328)
282 3p32_A Probable GTPase RV1496/ 94.9 0.09 3.1E-06 52.8 9.7 33 148-180 78-113 (355)
283 1ls1_A Signal recognition part 94.9 0.075 2.6E-06 52.2 8.9 33 148-180 97-132 (295)
284 3aez_A Pantothenate kinase; tr 94.9 0.018 6.2E-07 57.3 4.5 29 146-174 87-115 (312)
285 1ex7_A Guanylate kinase; subst 94.9 0.027 9.2E-07 52.0 5.2 26 151-176 3-28 (186)
286 3ney_A 55 kDa erythrocyte memb 94.9 0.027 9.2E-07 52.6 5.2 26 149-174 19-44 (197)
287 3lnc_A Guanylate kinase, GMP k 94.8 0.0098 3.4E-07 55.6 2.0 28 146-173 24-52 (231)
288 3thx_A DNA mismatch repair pro 94.7 0.14 4.8E-06 58.3 11.7 22 150-171 663-684 (934)
289 1p5z_B DCK, deoxycytidine kina 94.7 0.0088 3E-07 57.2 1.6 31 147-177 22-53 (263)
290 2c9o_A RUVB-like 1; hexameric 94.7 0.059 2E-06 56.0 7.9 71 213-312 296-380 (456)
291 3b9q_A Chloroplast SRP recepto 94.7 0.046 1.6E-06 54.1 6.7 28 146-173 97-124 (302)
292 2v9p_A Replication protein E1; 94.7 0.023 7.8E-07 56.6 4.4 29 145-173 122-150 (305)
293 1ewq_A DNA mismatch repair pro 94.6 0.15 5.1E-06 56.9 11.3 23 150-172 577-599 (765)
294 2oap_1 GSPE-2, type II secreti 94.6 0.015 5.3E-07 61.8 3.3 69 149-221 260-342 (511)
295 1c9k_A COBU, adenosylcobinamid 94.6 0.019 6.5E-07 53.0 3.4 32 152-184 2-33 (180)
296 1wb9_A DNA mismatch repair pro 94.6 0.2 6.7E-06 56.2 12.1 24 149-172 607-630 (800)
297 4i1u_A Dephospho-COA kinase; s 94.5 0.025 8.5E-07 53.4 4.0 31 150-181 10-40 (210)
298 3upu_A ATP-dependent DNA helic 94.5 0.019 6.7E-07 59.6 3.5 23 151-173 47-69 (459)
299 1p9r_A General secretion pathw 94.4 0.037 1.3E-06 57.4 5.5 25 150-174 168-192 (418)
300 1s96_A Guanylate kinase, GMP k 94.4 0.027 9.3E-07 53.0 4.0 28 147-174 14-41 (219)
301 2i3b_A HCR-ntpase, human cance 94.3 0.026 8.9E-07 52.0 3.5 23 151-173 3-25 (189)
302 2j9r_A Thymidine kinase; TK1, 94.2 0.099 3.4E-06 49.5 7.5 32 150-181 29-63 (214)
303 2og2_A Putative signal recogni 94.2 0.068 2.3E-06 54.3 6.8 28 146-173 154-181 (359)
304 3kta_A Chromosome segregation 94.1 0.033 1.1E-06 49.6 3.8 25 150-174 27-51 (182)
305 1vt4_I APAF-1 related killer D 94.0 0.041 1.4E-06 63.5 5.1 24 149-172 150-173 (1221)
306 3lxw_A GTPase IMAP family memb 94.0 0.067 2.3E-06 50.8 5.9 25 148-172 20-44 (247)
307 1rj9_A FTSY, signal recognitio 94.0 0.04 1.4E-06 54.6 4.5 26 148-173 101-126 (304)
308 3e1s_A Exodeoxyribonuclease V, 94.0 0.031 1.1E-06 60.2 3.9 34 149-182 204-240 (574)
309 2yhs_A FTSY, cell division pro 94.0 0.083 2.8E-06 56.1 7.0 29 145-173 289-317 (503)
310 1np6_A Molybdopterin-guanine d 93.9 0.042 1.4E-06 50.1 4.0 25 149-173 6-30 (174)
311 2qm8_A GTPase/ATPase; G protei 93.7 0.14 4.9E-06 51.1 8.1 28 146-173 52-79 (337)
312 3tqf_A HPR(Ser) kinase; transf 93.7 0.053 1.8E-06 50.1 4.4 29 150-179 17-45 (181)
313 2onk_A Molybdate/tungstate ABC 93.6 0.036 1.2E-06 53.0 3.2 28 145-173 21-48 (240)
314 3vkw_A Replicase large subunit 93.6 0.13 4.6E-06 53.7 7.8 27 146-172 158-184 (446)
315 3tmk_A Thymidylate kinase; pho 93.6 0.073 2.5E-06 50.2 5.3 31 148-178 4-34 (216)
316 1xjc_A MOBB protein homolog; s 93.6 0.048 1.6E-06 49.7 3.9 33 149-181 4-39 (169)
317 3v9p_A DTMP kinase, thymidylat 93.6 0.055 1.9E-06 51.5 4.4 34 148-181 24-64 (227)
318 2px0_A Flagellar biosynthesis 93.5 0.047 1.6E-06 53.8 4.0 36 147-182 103-142 (296)
319 4edh_A DTMP kinase, thymidylat 93.5 0.053 1.8E-06 50.9 4.2 33 149-181 6-41 (213)
320 2cbz_A Multidrug resistance-as 93.5 0.036 1.2E-06 52.8 2.9 28 146-173 28-55 (237)
321 2gk6_A Regulator of nonsense t 93.4 0.04 1.4E-06 59.7 3.5 32 151-182 197-232 (624)
322 3tif_A Uncharacterized ABC tra 93.3 0.038 1.3E-06 52.5 2.9 27 147-173 29-55 (235)
323 2pcj_A ABC transporter, lipopr 93.3 0.031 1.1E-06 52.7 2.3 27 147-173 28-54 (224)
324 1b0u_A Histidine permease; ABC 93.2 0.041 1.4E-06 53.2 2.9 29 146-174 29-57 (262)
325 1zu4_A FTSY; GTPase, signal re 93.1 0.065 2.2E-06 53.5 4.4 36 146-181 102-140 (320)
326 3ch4_B Pmkase, phosphomevalona 93.1 0.055 1.9E-06 50.9 3.6 30 146-175 8-37 (202)
327 2ffh_A Protein (FFH); SRP54, s 93.1 0.27 9.4E-06 51.0 9.2 34 148-181 97-133 (425)
328 2p67_A LAO/AO transport system 93.1 0.26 9E-06 49.1 8.8 28 146-173 53-80 (341)
329 1mv5_A LMRA, multidrug resista 93.1 0.046 1.6E-06 52.1 3.0 28 146-173 25-52 (243)
330 2zu0_C Probable ATP-dependent 93.0 0.055 1.9E-06 52.5 3.4 27 146-172 43-69 (267)
331 3lv8_A DTMP kinase, thymidylat 92.9 0.066 2.3E-06 51.2 3.9 25 149-173 27-51 (236)
332 2dzn_B 26S protease regulatory 92.9 0.024 8.2E-07 45.1 0.7 35 301-335 1-39 (82)
333 3b85_A Phosphate starvation-in 92.9 0.04 1.4E-06 51.5 2.3 24 149-172 22-45 (208)
334 2ghi_A Transport protein; mult 92.8 0.05 1.7E-06 52.5 2.9 28 146-173 43-70 (260)
335 3fvq_A Fe(3+) IONS import ATP- 92.8 0.055 1.9E-06 55.1 3.3 27 147-173 28-54 (359)
336 2f9l_A RAB11B, member RAS onco 92.8 0.062 2.1E-06 48.4 3.3 23 150-172 6-28 (199)
337 2olj_A Amino acid ABC transpor 92.8 0.051 1.7E-06 52.7 2.9 29 146-174 47-75 (263)
338 2d2e_A SUFC protein; ABC-ATPas 92.8 0.052 1.8E-06 52.0 2.9 26 147-172 27-52 (250)
339 2ixe_A Antigen peptide transpo 92.7 0.052 1.8E-06 52.8 2.9 29 146-174 42-70 (271)
340 1g6h_A High-affinity branched- 92.7 0.045 1.5E-06 52.7 2.4 27 147-173 31-57 (257)
341 3cr8_A Sulfate adenylyltranfer 92.7 0.05 1.7E-06 58.5 2.9 40 146-185 366-409 (552)
342 1oix_A RAS-related protein RAB 92.7 0.062 2.1E-06 48.4 3.2 24 150-173 30-53 (191)
343 3ld9_A DTMP kinase, thymidylat 92.6 0.088 3E-06 50.0 4.3 32 148-179 20-55 (223)
344 1ji0_A ABC transporter; ATP bi 92.6 0.048 1.6E-06 51.9 2.4 27 147-173 30-56 (240)
345 1lw7_A Transcriptional regulat 92.6 0.078 2.7E-06 53.3 4.1 32 145-176 164-197 (365)
346 2f1r_A Molybdopterin-guanine d 92.6 0.05 1.7E-06 49.4 2.4 24 150-173 3-26 (171)
347 3l0o_A Transcription terminati 92.6 0.33 1.1E-05 50.2 8.8 23 151-173 177-199 (427)
348 3k53_A Ferrous iron transport 92.6 0.22 7.4E-06 47.7 7.1 23 150-172 4-26 (271)
349 4f4c_A Multidrug resistance pr 92.6 0.15 5.1E-06 60.1 7.0 29 145-173 1101-1129(1321)
350 2yyz_A Sugar ABC transporter, 92.6 0.064 2.2E-06 54.6 3.4 27 147-173 27-53 (359)
351 2ff7_A Alpha-hemolysin translo 92.6 0.048 1.7E-06 52.2 2.4 28 147-174 33-60 (247)
352 2pze_A Cystic fibrosis transme 92.6 0.048 1.7E-06 51.5 2.4 27 147-173 32-58 (229)
353 2it1_A 362AA long hypothetical 92.6 0.064 2.2E-06 54.6 3.4 27 147-173 27-53 (362)
354 1nrj_B SR-beta, signal recogni 92.5 0.088 3E-06 47.8 4.0 25 149-173 12-36 (218)
355 1w36_D RECD, exodeoxyribonucle 92.5 0.066 2.3E-06 57.9 3.7 24 150-173 165-188 (608)
356 2dyk_A GTP-binding protein; GT 92.5 0.074 2.5E-06 45.3 3.3 22 151-172 3-24 (161)
357 3rlf_A Maltose/maltodextrin im 92.5 0.066 2.3E-06 54.9 3.4 27 147-173 27-53 (381)
358 2yz2_A Putative ABC transporte 92.5 0.06 2E-06 52.1 2.9 27 147-173 31-57 (266)
359 3d31_A Sulfate/molybdate ABC t 92.4 0.056 1.9E-06 54.7 2.8 27 147-173 24-50 (348)
360 1v43_A Sugar-binding transport 92.4 0.068 2.3E-06 54.6 3.4 27 147-173 35-61 (372)
361 1vpl_A ABC transporter, ATP-bi 92.4 0.061 2.1E-06 51.9 2.9 28 146-173 38-65 (256)
362 1sgw_A Putative ABC transporte 92.4 0.046 1.6E-06 51.4 2.0 26 148-173 34-59 (214)
363 2o8b_B DNA mismatch repair pro 92.3 0.66 2.2E-05 53.3 11.8 22 149-170 789-810 (1022)
364 1z2a_A RAS-related protein RAB 92.3 0.085 2.9E-06 45.1 3.5 24 149-172 5-28 (168)
365 1z47_A CYSA, putative ABC-tran 92.2 0.063 2.2E-06 54.5 2.9 27 147-173 39-65 (355)
366 3gfo_A Cobalt import ATP-bindi 92.2 0.054 1.9E-06 52.9 2.3 27 147-173 32-58 (275)
367 2ged_A SR-beta, signal recogni 92.2 0.1 3.5E-06 46.2 4.0 27 147-173 46-72 (193)
368 4g1u_C Hemin import ATP-bindin 92.2 0.056 1.9E-06 52.4 2.4 27 147-173 35-61 (266)
369 2qi9_C Vitamin B12 import ATP- 92.2 0.057 1.9E-06 51.9 2.4 27 147-173 24-50 (249)
370 2ce2_X GTPase HRAS; signaling 92.2 0.083 2.8E-06 44.8 3.2 23 150-172 4-26 (166)
371 1g29_1 MALK, maltose transport 92.1 0.067 2.3E-06 54.6 2.9 26 148-173 28-53 (372)
372 1kao_A RAP2A; GTP-binding prot 92.1 0.088 3E-06 44.8 3.3 23 150-172 4-26 (167)
373 2nq2_C Hypothetical ABC transp 92.1 0.059 2E-06 51.8 2.4 27 147-173 29-55 (253)
374 2vp4_A Deoxynucleoside kinase; 92.1 0.093 3.2E-06 49.1 3.7 27 146-172 17-43 (230)
375 2xtp_A GTPase IMAP family memb 92.1 0.34 1.2E-05 45.6 7.6 25 148-172 21-45 (260)
376 2ihy_A ABC transporter, ATP-bi 92.0 0.06 2E-06 52.7 2.4 28 147-174 45-72 (279)
377 1yrb_A ATP(GTP)binding protein 92.0 0.17 5.8E-06 47.4 5.5 35 147-181 12-48 (262)
378 1oxx_K GLCV, glucose, ABC tran 92.0 0.056 1.9E-06 54.8 2.2 27 147-173 29-55 (353)
379 1u8z_A RAS-related protein RAL 92.0 0.098 3.3E-06 44.5 3.5 24 149-172 4-27 (168)
380 2wjy_A Regulator of nonsense t 92.0 0.077 2.6E-06 59.4 3.5 23 151-173 373-395 (800)
381 1ek0_A Protein (GTP-binding pr 92.0 0.094 3.2E-06 44.8 3.3 23 150-172 4-26 (170)
382 1tf7_A KAIC; homohexamer, hexa 91.9 0.075 2.6E-06 56.2 3.2 29 145-173 277-305 (525)
383 1upt_A ARL1, ADP-ribosylation 91.9 0.13 4.4E-06 44.2 4.2 25 148-172 6-30 (171)
384 2v3c_C SRP54, signal recogniti 91.8 0.066 2.3E-06 55.7 2.5 35 148-182 98-135 (432)
385 4tmk_A Protein (thymidylate ki 91.8 0.11 3.9E-06 48.7 3.9 25 149-173 3-27 (213)
386 2zej_A Dardarin, leucine-rich 91.8 0.077 2.6E-06 47.1 2.6 21 151-171 4-24 (184)
387 3sop_A Neuronal-specific septi 91.8 0.094 3.2E-06 50.9 3.4 23 151-173 4-26 (270)
388 1z0j_A RAB-22, RAS-related pro 91.8 0.1 3.5E-06 44.7 3.3 24 150-173 7-30 (170)
389 2xau_A PRE-mRNA-splicing facto 91.7 0.11 3.9E-06 57.7 4.5 23 150-172 110-132 (773)
390 1wms_A RAB-9, RAB9, RAS-relate 91.7 0.1 3.5E-06 45.3 3.3 23 150-172 8-30 (177)
391 1ky3_A GTP-binding protein YPT 91.7 0.11 3.7E-06 45.1 3.4 24 149-172 8-31 (182)
392 1g16_A RAS-related protein SEC 91.7 0.1 3.4E-06 44.8 3.2 23 150-172 4-26 (170)
393 1z08_A RAS-related protein RAB 91.7 0.11 3.6E-06 44.7 3.3 24 149-172 6-29 (170)
394 3gd7_A Fusion complex of cysti 91.7 0.09 3.1E-06 54.0 3.3 26 147-172 45-70 (390)
395 2wji_A Ferrous iron transport 91.6 0.099 3.4E-06 45.6 3.1 23 150-172 4-26 (165)
396 2wsm_A Hydrogenase expression/ 91.6 0.13 4.3E-06 46.9 4.0 27 149-175 30-56 (221)
397 1r2q_A RAS-related protein RAB 91.5 0.11 3.8E-06 44.4 3.3 23 150-172 7-29 (170)
398 2nzj_A GTP-binding protein REM 91.5 0.12 4E-06 44.7 3.4 24 149-172 4-27 (175)
399 1r8s_A ADP-ribosylation factor 91.4 0.12 4.2E-06 44.1 3.5 22 151-172 2-23 (164)
400 3bc1_A RAS-related protein RAB 91.4 0.12 4.2E-06 45.2 3.5 25 148-172 10-34 (195)
401 2bbs_A Cystic fibrosis transme 91.4 0.089 3.1E-06 51.8 2.8 28 146-173 61-88 (290)
402 1c1y_A RAS-related protein RAP 91.4 0.12 4.1E-06 44.1 3.3 23 150-172 4-26 (167)
403 1dek_A Deoxynucleoside monopho 91.3 0.11 3.7E-06 50.0 3.2 28 150-177 2-29 (241)
404 2atv_A RERG, RAS-like estrogen 91.3 0.15 5E-06 45.6 3.9 25 148-172 27-51 (196)
405 2erx_A GTP-binding protein DI- 91.3 0.12 3.9E-06 44.4 3.1 23 150-172 4-26 (172)
406 3clv_A RAB5 protein, putative; 91.2 0.15 5.3E-06 44.7 4.0 25 148-172 6-30 (208)
407 2y8e_A RAB-protein 6, GH09086P 91.2 0.12 4E-06 44.7 3.2 23 150-172 15-37 (179)
408 3b1v_A Ferrous iron uptake tra 91.2 0.33 1.1E-05 47.0 6.7 23 150-172 4-26 (272)
409 3q85_A GTP-binding protein REM 91.2 0.12 4E-06 44.5 3.1 21 151-171 4-24 (169)
410 1f2t_A RAD50 ABC-ATPase; DNA d 91.2 0.14 4.6E-06 45.1 3.6 25 149-173 23-47 (149)
411 2lkc_A Translation initiation 91.2 0.15 5E-06 44.3 3.8 25 148-172 7-31 (178)
412 3q72_A GTP-binding protein RAD 91.2 0.11 3.7E-06 44.6 2.8 21 151-171 4-24 (166)
413 2x77_A ADP-ribosylation factor 91.1 0.13 4.3E-06 45.6 3.3 30 142-171 15-44 (189)
414 2xzl_A ATP-dependent helicase 91.1 0.11 3.7E-06 58.2 3.5 33 151-183 377-413 (802)
415 1z0f_A RAB14, member RAS oncog 91.1 0.13 4.5E-06 44.4 3.3 24 149-172 15-38 (179)
416 2pjz_A Hypothetical protein ST 91.1 0.098 3.3E-06 50.7 2.7 25 149-173 30-54 (263)
417 2qe7_A ATP synthase subunit al 91.0 0.38 1.3E-05 51.1 7.3 28 151-178 164-192 (502)
418 2r9v_A ATP synthase subunit al 91.0 0.36 1.2E-05 51.4 7.1 28 151-178 177-205 (515)
419 3a1s_A Iron(II) transport prot 91.0 0.35 1.2E-05 46.3 6.6 23 150-172 6-28 (258)
420 1pui_A ENGB, probable GTP-bind 91.0 0.07 2.4E-06 48.1 1.5 26 147-172 24-49 (210)
421 2a9k_A RAS-related protein RAL 90.9 0.14 4.7E-06 44.7 3.3 24 149-172 18-41 (187)
422 4hlc_A DTMP kinase, thymidylat 90.9 0.21 7.1E-06 46.4 4.7 32 150-181 3-36 (205)
423 2wjg_A FEOB, ferrous iron tran 90.9 0.14 4.6E-06 45.1 3.3 23 150-172 8-30 (188)
424 2hxs_A RAB-26, RAS-related pro 90.8 0.14 4.6E-06 44.5 3.2 24 149-172 6-29 (178)
425 4dsu_A GTPase KRAS, isoform 2B 90.8 0.14 4.8E-06 44.8 3.3 24 149-172 4-27 (189)
426 4dcu_A GTP-binding protein ENG 90.8 0.66 2.2E-05 48.0 8.9 22 151-172 25-46 (456)
427 1m7b_A RND3/RHOE small GTP-bin 90.8 0.13 4.6E-06 45.3 3.2 24 149-172 7-30 (184)
428 2hf9_A Probable hydrogenase ni 90.8 0.18 6.2E-06 46.1 4.1 26 149-174 38-63 (226)
429 2efe_B Small GTP-binding prote 90.8 0.14 4.9E-06 44.5 3.3 23 150-172 13-35 (181)
430 2fn4_A P23, RAS-related protei 90.8 0.14 4.7E-06 44.4 3.2 23 150-172 10-32 (181)
431 3con_A GTPase NRAS; structural 90.8 0.14 4.9E-06 45.1 3.3 23 150-172 22-44 (190)
432 3tw8_B RAS-related protein RAB 90.8 0.13 4.4E-06 44.6 3.0 24 149-172 9-32 (181)
433 2gza_A Type IV secretion syste 90.7 0.084 2.9E-06 53.3 1.9 26 149-174 175-200 (361)
434 2bme_A RAB4A, RAS-related prot 90.7 0.14 4.8E-06 44.8 3.2 24 149-172 10-33 (186)
435 2oil_A CATX-8, RAS-related pro 90.7 0.15 5E-06 45.3 3.3 24 149-172 25-48 (193)
436 3iby_A Ferrous iron transport 90.7 0.39 1.3E-05 45.9 6.6 22 151-172 3-24 (256)
437 3t1o_A Gliding protein MGLA; G 90.6 0.14 4.9E-06 45.0 3.1 24 150-173 15-38 (198)
438 3nh6_A ATP-binding cassette SU 90.6 0.099 3.4E-06 51.9 2.3 28 146-173 77-104 (306)
439 2npi_A Protein CLP1; CLP1-PCF1 90.5 0.14 4.7E-06 53.7 3.5 27 147-173 136-162 (460)
440 2obl_A ESCN; ATPase, hydrolase 90.5 0.2 6.9E-06 50.5 4.5 29 148-176 70-98 (347)
441 3tui_C Methionine import ATP-b 90.5 0.14 4.9E-06 52.2 3.4 27 147-173 52-78 (366)
442 1mh1_A RAC1; GTP-binding, GTPa 90.4 0.16 5.6E-06 44.2 3.3 23 150-172 6-28 (186)
443 3kkq_A RAS-related protein M-R 90.4 0.16 5.6E-06 44.4 3.3 24 149-172 18-41 (183)
444 2g6b_A RAS-related protein RAB 90.3 0.17 5.7E-06 44.0 3.3 25 148-172 9-33 (180)
445 2gj8_A MNME, tRNA modification 90.3 0.18 6.1E-06 44.4 3.5 24 149-172 4-27 (172)
446 3tkl_A RAS-related protein RAB 90.2 0.17 5.8E-06 44.7 3.3 24 149-172 16-39 (196)
447 3i8s_A Ferrous iron transport 90.2 0.73 2.5E-05 44.3 8.1 24 149-172 3-26 (274)
448 2gf9_A RAS-related protein RAB 90.2 0.17 5.9E-06 44.8 3.3 24 149-172 22-45 (189)
449 3bwd_D RAC-like GTP-binding pr 90.2 0.21 7.3E-06 43.4 3.9 24 149-172 8-31 (182)
450 2dpy_A FLII, flagellum-specifi 90.2 0.25 8.7E-06 51.4 5.0 31 146-176 154-184 (438)
451 2cxx_A Probable GTP-binding pr 90.1 0.15 5.2E-06 44.6 2.9 22 151-172 3-24 (190)
452 1svi_A GTP-binding protein YSX 90.1 0.17 5.8E-06 44.7 3.2 24 149-172 23-46 (195)
453 3dz8_A RAS-related protein RAB 90.0 0.18 6.1E-06 44.8 3.3 25 149-173 23-47 (191)
454 3hjn_A DTMP kinase, thymidylat 90.0 0.29 9.8E-06 45.1 4.8 31 152-182 3-36 (197)
455 3pqc_A Probable GTP-binding pr 90.0 0.14 4.8E-06 45.0 2.6 23 150-172 24-46 (195)
456 1x3s_A RAS-related protein RAB 89.9 0.19 6.4E-06 44.3 3.3 23 150-172 16-38 (195)
457 2iwr_A Centaurin gamma 1; ANK 89.9 0.15 5.2E-06 44.4 2.7 24 149-172 7-30 (178)
458 3c5c_A RAS-like protein 12; GD 89.9 0.19 6.4E-06 44.8 3.3 23 150-172 22-44 (187)
459 2nr8_A Kinesin-like protein KI 89.8 0.25 8.6E-06 50.2 4.5 78 108-204 68-145 (358)
460 1moz_A ARL1, ADP-ribosylation 89.8 0.15 5.3E-06 44.4 2.6 25 147-171 16-40 (183)
461 3t5g_A GTP-binding protein RHE 89.8 0.19 6.4E-06 43.9 3.2 23 150-172 7-29 (181)
462 2fg5_A RAB-22B, RAS-related pr 89.7 0.18 6.3E-06 44.9 3.2 25 148-172 22-46 (192)
463 2bov_A RAla, RAS-related prote 89.7 0.19 6.6E-06 44.7 3.3 24 149-172 14-37 (206)
464 3qks_A DNA double-strand break 89.7 0.19 6.6E-06 46.3 3.4 27 149-175 23-49 (203)
465 1ksh_A ARF-like protein 2; sma 89.7 0.22 7.5E-06 43.7 3.6 26 147-172 16-41 (186)
466 1m2o_B GTP-binding protein SAR 89.7 0.2 7E-06 44.7 3.4 23 150-172 24-46 (190)
467 1z06_A RAS-related protein RAB 89.6 0.2 6.8E-06 44.3 3.3 24 149-172 20-43 (189)
468 1ko7_A HPR kinase/phosphatase; 89.6 0.22 7.6E-06 49.7 3.9 29 149-178 144-172 (314)
469 2p5s_A RAS and EF-hand domain 89.6 0.24 8.2E-06 44.4 3.8 26 147-172 26-51 (199)
470 1zd9_A ADP-ribosylation factor 89.6 0.2 7E-06 44.4 3.3 24 149-172 22-45 (188)
471 1vg8_A RAS-related protein RAB 89.6 0.21 7.2E-06 44.6 3.4 25 148-172 7-31 (207)
472 2a5j_A RAS-related protein RAB 89.5 0.21 7E-06 44.4 3.3 24 149-172 21-44 (191)
473 3ihw_A Centg3; RAS, centaurin, 89.5 0.2 7E-06 44.6 3.3 23 150-172 21-43 (184)
474 3reg_A RHO-like small GTPase; 89.5 0.21 7E-06 44.4 3.3 24 149-172 23-46 (194)
475 3oaa_A ATP synthase subunit al 89.4 0.51 1.8E-05 50.1 6.7 28 151-178 164-192 (513)
476 1fx0_A ATP synthase alpha chai 89.4 0.36 1.2E-05 51.3 5.5 27 152-178 166-193 (507)
477 1knx_A Probable HPR(Ser) kinas 89.4 0.23 8E-06 49.6 3.8 30 149-179 147-176 (312)
478 2c61_A A-type ATP synthase non 89.4 0.42 1.4E-05 50.3 5.9 24 152-175 155-178 (469)
479 1zbd_A Rabphilin-3A; G protein 89.3 0.21 7.1E-06 44.7 3.1 24 149-172 8-31 (203)
480 3oes_A GTPase rhebl1; small GT 89.2 0.21 7.2E-06 44.8 3.2 24 149-172 24-47 (201)
481 2gf0_A GTP-binding protein DI- 89.2 0.28 9.7E-06 43.3 4.0 25 148-172 7-31 (199)
482 2bcg_Y Protein YP2, GTP-bindin 89.2 0.21 7.3E-06 44.8 3.2 24 149-172 8-31 (206)
483 3cph_A RAS-related protein SEC 89.1 0.28 9.4E-06 44.0 3.8 25 148-172 19-43 (213)
484 1nij_A Hypothetical protein YJ 89.1 0.5 1.7E-05 46.6 6.0 24 150-173 5-28 (318)
485 1zj6_A ADP-ribosylation factor 89.0 0.28 9.6E-06 43.3 3.7 25 148-172 15-39 (187)
486 2hjg_A GTP-binding protein ENG 88.9 1.3 4.3E-05 45.6 9.2 22 151-172 5-26 (436)
487 1gwn_A RHO-related GTP-binding 88.9 0.23 7.8E-06 45.3 3.2 24 149-172 28-51 (205)
488 1xx6_A Thymidine kinase; NESG, 88.9 0.51 1.7E-05 43.5 5.5 33 149-181 8-43 (191)
489 3euj_A Chromosome partition pr 88.8 0.26 8.8E-06 52.1 3.9 28 146-174 27-54 (483)
490 2www_A Methylmalonic aciduria 88.8 0.3 1E-05 49.0 4.2 25 149-173 74-98 (349)
491 1fzq_A ADP-ribosylation factor 88.7 0.28 9.4E-06 43.4 3.5 25 148-172 15-39 (181)
492 3t34_A Dynamin-related protein 88.7 1.7 5.7E-05 43.3 9.7 26 146-172 32-57 (360)
493 2atx_A Small GTP binding prote 88.6 0.25 8.4E-06 43.8 3.2 23 150-172 19-41 (194)
494 2ew1_A RAS-related protein RAB 88.6 0.25 8.5E-06 45.0 3.2 24 149-172 26-49 (201)
495 2fh5_B SR-beta, signal recogni 88.5 0.29 9.8E-06 44.2 3.6 24 149-172 7-30 (214)
496 2ck3_A ATP synthase subunit al 88.5 0.63 2.2E-05 49.5 6.6 24 151-174 164-188 (510)
497 2fu5_C RAS-related protein RAB 88.5 0.15 5E-06 44.7 1.5 24 149-172 8-31 (183)
498 2qag_B Septin-6, protein NEDD5 88.5 0.23 7.8E-06 51.7 3.2 21 152-172 45-65 (427)
499 1f6b_A SAR1; gtpases, N-termin 88.4 0.26 9.1E-06 44.4 3.2 23 149-171 25-47 (198)
500 4ag6_A VIRB4 ATPase, type IV s 88.2 0.44 1.5E-05 48.0 5.1 33 149-181 35-70 (392)
No 1
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=100.00 E-value=7.1e-54 Score=426.86 Aligned_cols=292 Identities=88% Similarity=1.401 Sum_probs=253.7
Q ss_pred ccccccCCCCCchhHHHHHHHHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCCh
Q 012383 114 NLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEP 193 (465)
Q Consensus 114 ~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge~ 193 (465)
+|+++.+++|++++|+++++.+++++|+..++.++|+|+|||||||||||++|++||+++|.+++.++++++.++|+|++
T Consensus 1 ~~~~~~~~~y~~~~~~~~~~~~~~k~~l~~~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~ 80 (293)
T 3t15_A 1 NLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEP 80 (293)
T ss_dssp CCCCEETTEECCHHHHHHHHHHHHHTTSCCTTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HH
T ss_pred CcccccCcccCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchh
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEE
Q 012383 194 AKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 273 (465)
Q Consensus 194 ~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~ 273 (465)
++.++++|..|.+.++...||||||||||++++++.+..+.+..++.+..+|++++|+.+.+++++.+......+|+||+
T Consensus 81 ~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ 160 (293)
T 3t15_A 81 AKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIV 160 (293)
T ss_dssp HHHHHHHHHHHHHHHTTSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEE
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEE
Confidence 99999999999888888999999999999999977655666677889999999999999988888887777788999999
Q ss_pred EeCCCCCCChhhhcCCCceEEEeCCCHHHHHHHHHHhccCCCCChhHHHHHhcCCCchhhHHHHHHHhhhhHHHHHHHHH
Q 012383 274 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWIS 353 (465)
Q Consensus 274 TTN~~~~LD~ALlR~GRfd~~i~~P~~e~R~~Il~~~l~~~~v~~~~la~lt~gfsgadld~~~alra~~~~~~v~~~i~ 353 (465)
|||+++.||+||+|+||||+.++.|+.++|.+|++.++...+++.+.+++++++|+|++|++++++|++++++++++|++
T Consensus 161 ttN~~~~ld~al~R~~R~d~~i~~P~~~~r~~Il~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~l~~~~~~~~i~~~~~ 240 (293)
T 3t15_A 161 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRTDNVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKWVS 240 (293)
T ss_dssp ECSSCCC--CHHHHHHHEEEEEECCCHHHHHHHHHHHHGGGCCCHHHHHHHHHHSCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCCcccCCHHHhCCCCCceeEeCcCHHHHHHHHHHhccCCCCCHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCccchhhhhcCcCCCCCCCCCccCHHHHHHHHHHHHHHhhhhhhhhhHH
Q 012383 354 GVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLAD 405 (465)
Q Consensus 354 ~~~~e~l~~~lv~~~~~~~~f~~~~~~~~~lle~g~~lv~eqe~v~~~~l~~ 405 (465)
+.|.+++.+.+++++.+.|.|.++.+++++|+++|++++.||+++..++|++
T Consensus 241 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~eq~~~~~~~l~~ 292 (293)
T 3t15_A 241 GTGIEKIGDKLLNSFDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLAD 292 (293)
T ss_dssp HTCSTTCHHHHTSCSSCSCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHcCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 9999999999999988899999999999999999999999999999999976
No 2
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-41 Score=351.02 Aligned_cols=208 Identities=17% Similarity=0.238 Sum_probs=172.0
Q ss_pred ccccccCCCCCchhHHHHHHHHHHHhhh-hCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCC
Q 012383 114 NLDNTIDGLYIAPAFMDKLVVHITKNFM-SLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGE 192 (465)
Q Consensus 114 ~~~~~~~~~~i~~~~~d~~~~~i~k~~l-~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge 192 (465)
+|+.+.|-..+..++.+.+.+.+...-+ ...|+++|+|+|||||||||||++|+|||++++++|+.++++++.++|+|+
T Consensus 146 ~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGe 225 (405)
T 4b4t_J 146 TYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGE 225 (405)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTH
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccch
Confidence 5677777666666666666655554433 345999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEE
Q 012383 193 PAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 272 (465)
Q Consensus 193 ~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI 272 (465)
+++++|.+|..| +..+||||||||||+++++|..... ..+.....++..+|+ +|+|+ ....+|+||
T Consensus 226 se~~vr~lF~~A----r~~aP~IIFiDEiDai~~~R~~~~~--~~~~~~~~~l~~lL~-----~lDg~---~~~~~V~vI 291 (405)
T 4b4t_J 226 GSRMVRELFVMA----REHAPSIIFMDEIDSIGSTRVEGSG--GGDSEVQRTMLELLN-----QLDGF---ETSKNIKII 291 (405)
T ss_dssp HHHHHHHHHHHH----HHTCSEEEEEESSSCCTTSCSCSSS--GGGGHHHHHHHHHHH-----HHHTT---TCCCCEEEE
T ss_pred HHHHHHHHHHHH----HHhCCceEeeecchhhccCCCCCCC--CCcHHHHHHHHHHHH-----hhhcc---CCCCCeEEE
Confidence 999999999999 9999999999999999998863321 122222333333333 33366 567889999
Q ss_pred EEeCCCCCCChhhhcCCCceEEEe--CCCHHHHHHHHHHhccCC----CCChhHHHHHhcCCCchhhHH
Q 012383 273 VTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF 335 (465)
Q Consensus 273 ~TTN~~~~LD~ALlR~GRfd~~i~--~P~~e~R~~Il~~~l~~~----~v~~~~la~lt~gfsgadld~ 335 (465)
+|||+|+.|||||+||||||+.|+ +|+.++|.+||+.|+++. +++.+.|++.|+||+|+||..
T Consensus 292 aATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~ 360 (405)
T 4b4t_J 292 MATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKG 360 (405)
T ss_dssp EEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHH
T ss_pred eccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHH
Confidence 999999999999999999999999 999999999999999764 456779999999999999973
No 3
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-40 Score=344.84 Aligned_cols=208 Identities=19% Similarity=0.269 Sum_probs=168.0
Q ss_pred ccccccCCCCCchhHHHHHHHHHHHh-hhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCC
Q 012383 114 NLDNTIDGLYIAPAFMDKLVVHITKN-FMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGE 192 (465)
Q Consensus 114 ~~~~~~~~~~i~~~~~d~~~~~i~k~-~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge 192 (465)
+|+.+.|-..+..++.+.+...+... +....|+++|+|||||||||||||++|+|||++++++|+.++++++.++|+|+
T Consensus 180 ~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGe 259 (437)
T 4b4t_I 180 SYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGD 259 (437)
T ss_dssp CGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSH
T ss_pred cceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCch
Confidence 55666665555555555444443322 22345999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEE
Q 012383 193 PAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 272 (465)
Q Consensus 193 ~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI 272 (465)
++++++.+|..| +..+||||||||||+++++|...... .+..+..++..+|+ +++++ ....+|+||
T Consensus 260 sek~ir~lF~~A----r~~aP~IIfiDEiDai~~~R~~~~~~--~~~~~~~~l~~LL~-----~lDg~---~~~~~ViVI 325 (437)
T 4b4t_I 260 GPRLCRQIFKVA----GENAPSIVFIDEIDAIGTKRYDSNSG--GEREIQRTMLELLN-----QLDGF---DDRGDVKVI 325 (437)
T ss_dssp HHHHHHHHHHHH----HHTCSEEEEEEEESSSSCCCSCSSCS--SCCHHHHHHHHHHH-----HHHHC---CCSSSEEEE
T ss_pred HHHHHHHHHHHH----HhcCCcEEEEehhhhhcccCCCCCCC--ccHHHHHHHHHHHH-----HhhCc---CCCCCEEEE
Confidence 999999999999 99999999999999999998633221 11222233333333 33355 666889999
Q ss_pred EEeCCCCCCChhhhcCCCceEEEe--CCCHHHHHHHHHHhccCC----CCChhHHHHHhcCCCchhhHH
Q 012383 273 VTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF 335 (465)
Q Consensus 273 ~TTN~~~~LD~ALlR~GRfd~~i~--~P~~e~R~~Il~~~l~~~----~v~~~~la~lt~gfsgadld~ 335 (465)
+|||+++.|||||+||||||+.|+ +|+.++|.+||+.|++.. +++.+.|++.|+||||+||..
T Consensus 326 aATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~ 394 (437)
T 4b4t_I 326 MATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQA 394 (437)
T ss_dssp EEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHH
T ss_pred EeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHH
Confidence 999999999999999999999999 999999999999999764 466789999999999999974
No 4
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.3e-40 Score=344.22 Aligned_cols=209 Identities=18% Similarity=0.253 Sum_probs=172.3
Q ss_pred cccccccCCCCCchhHHHHHHHHHHHhhh-hCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCC
Q 012383 113 YNLDNTIDGLYIAPAFMDKLVVHITKNFM-SLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAG 191 (465)
Q Consensus 113 ~~~~~~~~~~~i~~~~~d~~~~~i~k~~l-~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~G 191 (465)
.+|+.+.|-..+..++.+.+...+...-+ ...|+++|+|||||||||||||++|+|||++++++|+.+++++|.++|+|
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vG 285 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVG 285 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSS
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCC
Confidence 45677777666666666655554443322 34589999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceE
Q 012383 192 EPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI 271 (465)
Q Consensus 192 e~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~V 271 (465)
++++++|.+|..| +..+||||||||||+++.+|..... .....+..+++.+|+ +|++. ....+|+|
T Consensus 286 esek~ir~lF~~A----r~~aP~IIfiDEiDai~~~R~~~~~--~~~~~~~~~l~~lL~-----~lDg~---~~~~~ViV 351 (467)
T 4b4t_H 286 EGARMVRELFEMA----RTKKACIIFFDEIDAVGGARFDDGA--GGDNEVQRTMLELIT-----QLDGF---DPRGNIKV 351 (467)
T ss_dssp HHHHHHHHHHHHH----HHTCSEEEEEECCTTTSBCCSSSSC--GGGGHHHHHHHHHHH-----HHHSS---CCTTTEEE
T ss_pred HHHHHHHHHHHHH----HhcCCceEeecccccccccccCcCC--CccHHHHHHHHHHHH-----Hhhcc---CCCCcEEE
Confidence 9999999999999 9999999999999999998863322 122233333444444 33355 66788999
Q ss_pred EEEeCCCCCCChhhhcCCCceEEEe--CCCHHHHHHHHHHhccCC----CCChhHHHHHhcCCCchhhHH
Q 012383 272 IVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF 335 (465)
Q Consensus 272 I~TTN~~~~LD~ALlR~GRfd~~i~--~P~~e~R~~Il~~~l~~~----~v~~~~la~lt~gfsgadld~ 335 (465)
|+|||+++.||+||+||||||+.|+ +|+.++|.+||+.|++.. +++.+.|++.|+||+|+||..
T Consensus 352 IaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~ 421 (467)
T 4b4t_H 352 MFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRS 421 (467)
T ss_dssp EEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHH
T ss_pred EeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHH
Confidence 9999999999999999999999999 999999999999999764 466789999999999999973
No 5
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.4e-40 Score=343.11 Aligned_cols=208 Identities=24% Similarity=0.326 Sum_probs=169.3
Q ss_pred ccccccCCCCCchhHHHHHHHHHHHhhh-hCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCC
Q 012383 114 NLDNTIDGLYIAPAFMDKLVVHITKNFM-SLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGE 192 (465)
Q Consensus 114 ~~~~~~~~~~i~~~~~d~~~~~i~k~~l-~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge 192 (465)
+|+.+.|-..+..++.+.+...+...-+ ...|+++|+|||||||||||||++|+|||++++++|+.++++++.++|+|+
T Consensus 179 ~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~Ge 258 (437)
T 4b4t_L 179 TFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGE 258 (437)
T ss_dssp CSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSSH
T ss_pred ChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccchH
Confidence 5577777655555655555544433322 345899999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEE
Q 012383 193 PAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 272 (465)
Q Consensus 193 ~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI 272 (465)
++++++.+|..| +..+||||||||||+++++|..... ..+..+..++..+|+ +|+|+ ....+|+||
T Consensus 259 se~~ir~~F~~A----~~~~P~IifiDEiDai~~~R~~~~~--~~~~~~~~~l~~lL~-----~lDg~---~~~~~vivI 324 (437)
T 4b4t_L 259 SARIIREMFAYA----KEHEPCIIFMDEVDAIGGRRFSEGT--SADREIQRTLMELLT-----QMDGF---DNLGQTKII 324 (437)
T ss_dssp HHHHHHHHHHHH----HHSCSEEEEEECCCSSSCCCSSSCC--SSTTHHHHHHHHHHH-----HHHSS---SCTTSSEEE
T ss_pred HHHHHHHHHHHH----HhcCCceeeeecccccccccccCCC--CcchHHHHHHHHHHH-----Hhhcc---cCCCCeEEE
Confidence 999999999999 9999999999999999998853221 112222223333333 33366 556789999
Q ss_pred EEeCCCCCCChhhhcCCCceEEEe--CCCHHHHHHHHHHhccCC----CCChhHHHHHhcCCCchhhHH
Q 012383 273 VTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF 335 (465)
Q Consensus 273 ~TTN~~~~LD~ALlR~GRfd~~i~--~P~~e~R~~Il~~~l~~~----~v~~~~la~lt~gfsgadld~ 335 (465)
+|||+|+.|||||+||||||+.|+ +|+.++|.+||+.|+++. +++.+.+++.|+||+|+||..
T Consensus 325 ~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~ 393 (437)
T 4b4t_L 325 MATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRN 393 (437)
T ss_dssp EEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHH
T ss_pred EecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHH
Confidence 999999999999999999999999 999999999999998753 567789999999999999974
No 6
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.7e-40 Score=343.58 Aligned_cols=208 Identities=20% Similarity=0.304 Sum_probs=171.7
Q ss_pred ccccccCCCCCchhHHHHHHHHHHHhhh-hCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCC
Q 012383 114 NLDNTIDGLYIAPAFMDKLVVHITKNFM-SLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGE 192 (465)
Q Consensus 114 ~~~~~~~~~~i~~~~~d~~~~~i~k~~l-~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge 192 (465)
+|+.+.|-..+..++.+.+...+...-+ ...|+++|+|||||||||||||++|+|||++++++|+.++++++.++|+|+
T Consensus 179 t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vGe 258 (434)
T 4b4t_M 179 TYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGE 258 (434)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSSH
T ss_pred ChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccch
Confidence 5677777666666666555554443222 345999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEE
Q 012383 193 PAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 272 (465)
Q Consensus 193 ~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI 272 (465)
++++++.+|..| +..+||||||||||+++++|.+.. ....+.+..++..+|+ +|+|+ ....+|+||
T Consensus 259 se~~ir~lF~~A----~~~aP~IifiDEiDal~~~R~~~~--~~~~~~~~~~~~~lL~-----~ldg~---~~~~~ViVI 324 (434)
T 4b4t_M 259 GAKLVRDAFALA----KEKAPTIIFIDELDAIGTKRFDSE--KSGDREVQRTMLELLN-----QLDGF---SSDDRVKVL 324 (434)
T ss_dssp HHHHHHHHHHHH----HHHCSEEEEEECTHHHHCCCSSGG--GGTTHHHHHHHHHHHH-----HHTTS---CSSCSSEEE
T ss_pred HHHHHHHHHHHH----HhcCCeEEeecchhhhhhccCCCC--CCCchHHHHHHHHHHH-----Hhhcc---CCCCCEEEE
Confidence 999999999999 889999999999999999986322 2222333344444444 44466 566789999
Q ss_pred EEeCCCCCCChhhhcCCCceEEEe--CCCHHHHHHHHHHhccC----CCCChhHHHHHhcCCCchhhHH
Q 012383 273 VTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRN----DNVADDDIVKLVDTFPGQSIDF 335 (465)
Q Consensus 273 ~TTN~~~~LD~ALlR~GRfd~~i~--~P~~e~R~~Il~~~l~~----~~v~~~~la~lt~gfsgadld~ 335 (465)
+|||+|+.|||||+||||||+.|+ +|+.++|.+||+.|++. .+++.+.|++.|+||+|+||..
T Consensus 325 aaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~ 393 (434)
T 4b4t_M 325 AATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKA 393 (434)
T ss_dssp EECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHH
T ss_pred EeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHH
Confidence 999999999999999999999999 99999999999998864 3567889999999999999974
No 7
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.6e-39 Score=334.77 Aligned_cols=206 Identities=17% Similarity=0.237 Sum_probs=169.5
Q ss_pred ccccccCCCCCchhHHHHHHHHHHHh-hhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCC
Q 012383 114 NLDNTIDGLYIAPAFMDKLVVHITKN-FMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGE 192 (465)
Q Consensus 114 ~~~~~~~~~~i~~~~~d~~~~~i~k~-~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge 192 (465)
+|+.+.|-..+...+.+.+...+... +....|+++|+|+|||||||||||++|+|||++++++|+.++++++.++|+|+
T Consensus 170 ~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge 249 (428)
T 4b4t_K 170 TYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGE 249 (428)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSH
T ss_pred CHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccch
Confidence 55777766555556655555444332 22345999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCc--ccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCce
Q 012383 193 PAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT--QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 270 (465)
Q Consensus 193 ~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~--~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~ 270 (465)
++++++.+|..| +..+||||||||+|++++.|.... .....++++++ |++.+| |+ ....+|+
T Consensus 250 ~e~~ir~lF~~A----~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~-lL~~ld--------g~---~~~~~v~ 313 (428)
T 4b4t_K 250 GPRMVRDVFRLA----RENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIE-LLTQMD--------GF---DQSTNVK 313 (428)
T ss_dssp HHHHHHHHHHHH----HHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHH-HHHHHH--------HS---CSSCSEE
T ss_pred hHHHHHHHHHHH----HHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHH-HHHHhh--------CC---CCCCCEE
Confidence 999999999999 999999999999999999885322 22334455554 334444 66 5567899
Q ss_pred EEEEeCCCCCCChhhhcCCCceEEEe---CCCHHHHHHHHHHhccCC----CCChhHHHHHhcCCCchhhHH
Q 012383 271 IIVTGNDFSTLYAPLIRDGRMEKFYW---APTREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF 335 (465)
Q Consensus 271 VI~TTN~~~~LD~ALlR~GRfd~~i~---~P~~e~R~~Il~~~l~~~----~v~~~~la~lt~gfsgadld~ 335 (465)
||+|||+++.|||||+||||||+.|+ +|+.++|..|++.|++.. +++.+.+++.|+||+|+||..
T Consensus 314 vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~ 385 (428)
T 4b4t_K 314 VIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAA 385 (428)
T ss_dssp EEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHH
T ss_pred EEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHH
Confidence 99999999999999999999999997 589999999999998764 456779999999999999974
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=8.7e-38 Score=348.37 Aligned_cols=192 Identities=22% Similarity=0.343 Sum_probs=137.3
Q ss_pred CCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccc
Q 012383 143 LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 222 (465)
Q Consensus 143 ~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEID 222 (465)
..|+++|+|+|||||||||||++|++||++++.+|+.++++++.++|+|+++++++++|..| +..+||||||||||
T Consensus 505 ~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~A----r~~~P~IifiDEiD 580 (806)
T 3cf2_A 505 KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA----RQAAPCVLFFDELD 580 (806)
T ss_dssp SSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHH----HTTCSEEEECSCGG
T ss_pred hcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHH----HHcCCceeechhhh
Confidence 34889999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred cccCCCCCC--cccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhhcCCCceEEEe--CC
Q 012383 223 AGAGRMGGT--TQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--AP 298 (465)
Q Consensus 223 ai~~~r~~~--~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~--~P 298 (465)
++++.|+.. ....+.+++++++| ..+| |+ ....+|+||+|||+|+.||+||+||||||+.++ +|
T Consensus 581 sl~~~R~~~~~~~~~~~~rv~~~lL-~~md--------g~---~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lP 648 (806)
T 3cf2_A 581 SIAKARGGNIGDGGGAADRVINQIL-TEMD--------GM---STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLP 648 (806)
T ss_dssp GCC--------------CHHHHHHH-HHHH--------SS---CSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC---
T ss_pred HHhhccCCCCCCCchHHHHHHHHHH-HHHh--------CC---CCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCc
Confidence 999998632 22334556666554 4444 66 556789999999999999999999999999999 99
Q ss_pred CHHHHHHHHHHhccCC----CCChhHHHHHhcCCCchhhHHHHHHHhhhhHHHHHHHHH
Q 012383 299 TREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWIS 353 (465)
Q Consensus 299 ~~e~R~~Il~~~l~~~----~v~~~~la~lt~gfsgadld~~~alra~~~~~~v~~~i~ 353 (465)
+.++|.+|++.++++. +++.+.|++.|+||||+||..+ +......++++.+.
T Consensus 649 d~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l---~~~A~~~a~r~~~~ 704 (806)
T 3cf2_A 649 DEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEI---CQRACKLAIRESIE 704 (806)
T ss_dssp --CHHHHTTTTTSSCC--CCC----------------CHHHH---HHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHH---HHHHHHHHHHHHHH
Confidence 9999999999999865 4556789999999999999743 33333344555544
No 9
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=1.3e-35 Score=331.02 Aligned_cols=221 Identities=19% Similarity=0.264 Sum_probs=180.4
Q ss_pred cccccccCCCCCchhHHHHHHHHHHHhhh-hCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCC
Q 012383 113 YNLDNTIDGLYIAPAFMDKLVVHITKNFM-SLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAG 191 (465)
Q Consensus 113 ~~~~~~~~~~~i~~~~~d~~~~~i~k~~l-~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~G 191 (465)
.+|+.+.|-......+.+.+.+.+...-+ ...|+++|+|||||||||||||+||++||+++|.+++.++++++.++|+|
T Consensus 201 v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~g 280 (806)
T 3cf2_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAG 280 (806)
T ss_dssp CCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTT
T ss_pred CChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccch
Confidence 45677777767777776655555544333 35699999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceE
Q 012383 192 EPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI 271 (465)
Q Consensus 192 e~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~V 271 (465)
++++.++.+|..| +..+||||||||||+++++|++. ......+++++ |+.++| ++ ....+|+|
T Consensus 281 ese~~lr~lF~~A----~~~~PsIIfIDEiDal~~~r~~~-~~~~~~riv~~-LL~~md--------g~---~~~~~V~V 343 (806)
T 3cf2_A 281 ESESNLRKAFEEA----EKNAPAIIFIDELDAIAPKREKT-HGEVERRIVSQ-LLTLMD--------GL---KQRAHVIV 343 (806)
T ss_dssp HHHHHHHHHHHHH----TTSCSEEEEEESGGGTCCTTTTC-CCTTHHHHHHH-HHTHHH--------HC---CGGGCEEE
T ss_pred HHHHHHHHHHHHH----HHcCCeEEEEehhcccccccCCC-CChHHHHHHHH-HHHHHh--------cc---cccCCEEE
Confidence 9999999999999 99999999999999999998633 33444455554 445555 44 44578999
Q ss_pred EEEeCCCCCCChhhhcCCCceEEEe--CCCHHHHHHHHHHhccCC----CCChhHHHHHhcCCCchhhHHHHHHHhhhhH
Q 012383 272 IVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDFFGALRARVYD 345 (465)
Q Consensus 272 I~TTN~~~~LD~ALlR~GRfd~~i~--~P~~e~R~~Il~~~l~~~----~v~~~~la~lt~gfsgadld~~~alra~~~~ 345 (465)
|+|||+++.||+||+|+||||+.|+ +|+.++|.+|++.|++.. +++.+.++..|+||+|+||.. |+.....
T Consensus 344 IaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~---Lv~eA~~ 420 (806)
T 3cf2_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAA---LCSEAAL 420 (806)
T ss_dssp EEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHH---HHHHHHH
T ss_pred EEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHH---HHHHHHH
Confidence 9999999999999999999999999 999999999999998764 567789999999999999974 3333333
Q ss_pred HHHHHHHH
Q 012383 346 DEVRKWIS 353 (465)
Q Consensus 346 ~~v~~~i~ 353 (465)
.++++...
T Consensus 421 ~A~~r~~~ 428 (806)
T 3cf2_A 421 QAIRKKMD 428 (806)
T ss_dssp HHHHHHHH
T ss_pred HHHHhccc
Confidence 44454443
No 10
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.97 E-value=3e-29 Score=252.73 Aligned_cols=221 Identities=18% Similarity=0.199 Sum_probs=171.3
Q ss_pred cccccccCCCCCchhHHHHHHHHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHh-CCceEEecccccccCCCC
Q 012383 113 YNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM-GINPIMMSAGELESGNAG 191 (465)
Q Consensus 113 ~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~el-g~~~i~vs~s~L~s~~~G 191 (465)
.+|+.+.|-..+...+.+.+...+....+...+..+|+++|||||||||||++|+++|+++ +.+|+.++++++.++|.|
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~~~g 88 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLG 88 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCSSCC
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhhhhh
Confidence 3567777765555555555544444444444456788999999999999999999999999 899999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceE
Q 012383 192 EPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI 271 (465)
Q Consensus 192 e~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~V 271 (465)
++++.++.+|..| +..+|+||||||||++++.+... ......++++++| ..++ +.. ....+++|
T Consensus 89 ~~~~~~~~lf~~a----~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~~~~~ll-~~ld--------~~~--~~~~~v~v 152 (322)
T 1xwi_A 89 ESEKLVKNLFQLA----RENKPSIIFIDEIDSLCGSRSEN-ESEAARRIKTEFL-VQMQ--------GVG--VDNDGILV 152 (322)
T ss_dssp SCHHHHHHHHHHH----HHTSSEEEEEETTTGGGCCSSSC-CTTHHHHHHHHHH-HHHH--------CSS--SCCTTEEE
T ss_pred HHHHHHHHHHHHH----HhcCCcEEEeecHHHhccccccc-cchHHHHHHHHHH-HHHh--------ccc--ccCCCEEE
Confidence 9999999999998 88899999999999999887632 3334445555443 4444 331 23578999
Q ss_pred EEEeCCCCCCChhhhcCCCceEEEe--CCCHHHHHHHHHHhccCCCC--C---hhHHHHHhcCCCchhhHHHHHHHhhhh
Q 012383 272 IVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNV--A---DDDIVKLVDTFPGQSIDFFGALRARVY 344 (465)
Q Consensus 272 I~TTN~~~~LD~ALlR~GRfd~~i~--~P~~e~R~~Il~~~l~~~~v--~---~~~la~lt~gfsgadld~~~alra~~~ 344 (465)
|+|||+++.||++++| ||++.++ +|+.++|.+|++.++...+. + .+.|++.++||+|+||.. |+....
T Consensus 153 I~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~---l~~~A~ 227 (322)
T 1xwi_A 153 LGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISI---IVRDAL 227 (322)
T ss_dssp EEEESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHH---HHHHHH
T ss_pred EEecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHH---HHHHHH
Confidence 9999999999999999 9998888 99999999999999876543 3 347888999999999974 333333
Q ss_pred HHHHHHHHHh
Q 012383 345 DDEVRKWISG 354 (465)
Q Consensus 345 ~~~v~~~i~~ 354 (465)
..++++.+..
T Consensus 228 ~~a~r~~~~~ 237 (322)
T 1xwi_A 228 MQPVRKVQSA 237 (322)
T ss_dssp THHHHHHHHC
T ss_pred HHHHHHHHhh
Confidence 4456665543
No 11
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.97 E-value=2.4e-29 Score=252.40 Aligned_cols=224 Identities=17% Similarity=0.224 Sum_probs=170.9
Q ss_pred cccccccccCCCCCchhHHHHHHHHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCC
Q 012383 111 RTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNA 190 (465)
Q Consensus 111 r~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~ 190 (465)
...+|+.+.|...+...+.+.+........+...+..+++++|||||||||||++|++||++++.+|+.++++++.++|.
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~ 92 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWM 92 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTTTG
T ss_pred CCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhccc
Confidence 34456888887555555555444444433333456778899999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCce
Q 012383 191 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 270 (465)
Q Consensus 191 Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~ 270 (465)
|+.++.++.+|..| +...|+||||||||.+...+... +.....+... .|+..++ +.. ....+|+
T Consensus 93 g~~~~~~~~~f~~a----~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~~~~-~ll~~l~--------~~~--~~~~~v~ 156 (322)
T 3eie_A 93 GESEKLVKQLFAMA----RENKPSIIFIDQVDALTGTRGEG-ESEASRRIKT-ELLVQMN--------GVG--NDSQGVL 156 (322)
T ss_dssp GGHHHHHHHHHHHH----HHTSSEEEEEECGGGGSCC-------CCTHHHHH-HHHHHHG--------GGG--TSCCCEE
T ss_pred chHHHHHHHHHHHH----HhcCCeEEEechhhhhhccCCCC-cchHHHHHHH-HHHHHhc--------ccc--ccCCceE
Confidence 99999999999999 88899999999999999887522 2333344444 3444555 331 2356799
Q ss_pred EEEEeCCCCCCChhhhcCCCceEEEe--CCCHHHHHHHHHHhccCCCC--Ch---hHHHHHhcCCCchhhHHHHHHHhhh
Q 012383 271 IIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNV--AD---DDIVKLVDTFPGQSIDFFGALRARV 343 (465)
Q Consensus 271 VI~TTN~~~~LD~ALlR~GRfd~~i~--~P~~e~R~~Il~~~l~~~~v--~~---~~la~lt~gfsgadld~~~alra~~ 343 (465)
||+|||+++.||++++| ||++.++ +|+.++|.+|++.++..... +. +.|++.++||+|+||.. ++...
T Consensus 157 vi~atn~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~---l~~~a 231 (322)
T 3eie_A 157 VLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAV---VVKDA 231 (322)
T ss_dssp EEEEESCGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHH---HHHHH
T ss_pred EEEecCChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHH---HHHHH
Confidence 99999999999999999 9998888 99999999999999987643 33 37888899999999973 33334
Q ss_pred hHHHHHHHHHhh
Q 012383 344 YDDEVRKWISGV 355 (465)
Q Consensus 344 ~~~~v~~~i~~~ 355 (465)
...++++.....
T Consensus 232 ~~~a~r~~~~~~ 243 (322)
T 3eie_A 232 LMQPIRKIQSAT 243 (322)
T ss_dssp TTHHHHHHHHCE
T ss_pred HHHHHHHHhhhh
Confidence 445666666553
No 12
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.96 E-value=1.6e-29 Score=268.14 Aligned_cols=206 Identities=19% Similarity=0.232 Sum_probs=157.6
Q ss_pred ccccccccCCCCCchhHHHHHHHHHHHh--hhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCC
Q 012383 112 TYNLDNTIDGLYIAPAFMDKLVVHITKN--FMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN 189 (465)
Q Consensus 112 ~~~~~~~~~~~~i~~~~~d~~~~~i~k~--~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~ 189 (465)
..+|+.+.|......++.+- +.. .++ .+...+.++|+|+||+||||||||++|++||++++.+|+.++++++.+.+
T Consensus 12 ~~~f~di~G~~~~~~~l~e~-v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~ 89 (476)
T 2ce7_A 12 RVTFKDVGGAEEAIEELKEV-VEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELF 89 (476)
T ss_dssp CCCGGGCCSCHHHHHHHHHH-HHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCC
T ss_pred CCCHHHhCCcHHHHHHHHHH-HHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHH
Confidence 44567777653333333221 111 111 12245788999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCc--ccchhhHHHHHHHHHhhcCCccccCCCccccCCCC
Q 012383 190 AGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT--QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP 267 (465)
Q Consensus 190 ~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~--~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~ 267 (465)
+|..+..++.+|..| +...||||||||||++..+++... ......+.++++| ..+| ++ ....
T Consensus 90 ~g~~~~~~r~lf~~A----~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL-~~ld--------~~---~~~~ 153 (476)
T 2ce7_A 90 VGVGAARVRDLFAQA----KAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLL-VEMD--------GF---DSKE 153 (476)
T ss_dssp TTHHHHHHHHHHHHH----HHTCSEEEEEETGGGTCCC---------CHHHHHHHHHH-HHHH--------HS---CGGG
T ss_pred hcccHHHHHHHHHHH----HhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHH-HHHh--------cc---CCCC
Confidence 999999999999999 888999999999999998875211 1122223344333 3334 33 3346
Q ss_pred CceEEEEeCCCCCCChhhhcCCCceEEEe--CCCHHHHHHHHHHhccCC----CCChhHHHHHhcCCCchhhHH
Q 012383 268 RVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF 335 (465)
Q Consensus 268 ~V~VI~TTN~~~~LD~ALlR~GRfd~~i~--~P~~e~R~~Il~~~l~~~----~v~~~~la~lt~gfsgadld~ 335 (465)
+|+||+|||+++.||++++|+||||+.+. +|+.++|.+|++.+++.. +++.+.++..+.||+|++|..
T Consensus 154 ~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~ 227 (476)
T 2ce7_A 154 GIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLEN 227 (476)
T ss_dssp TEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHH
T ss_pred CEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHH
Confidence 79999999999999999999999999888 999999999999998764 445668999999999999974
No 13
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.96 E-value=1.7e-29 Score=251.49 Aligned_cols=208 Identities=18% Similarity=0.288 Sum_probs=160.7
Q ss_pred ccccccccCCCCCchhHHHHHHHHHHHh-hhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCC
Q 012383 112 TYNLDNTIDGLYIAPAFMDKLVVHITKN-FMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNA 190 (465)
Q Consensus 112 ~~~~~~~~~~~~i~~~~~d~~~~~i~k~-~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~ 190 (465)
..+|+++.|...+...+.+.+...+... .....++++++++|||||||||||++|+++|++++.+++.++++++.++|.
T Consensus 11 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~~ 90 (301)
T 3cf0_A 11 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWF 90 (301)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhhc
Confidence 3456777766444444433322221111 112237788999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCc--ccchhhHHHHHHHHHhhcCCccccCCCccccCCCCC
Q 012383 191 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT--QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPR 268 (465)
Q Consensus 191 Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~--~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~ 268 (465)
|+.++.++.+|..| ....|+||||||||.+...+++.. ......+.+. .|+..++ +. ....+
T Consensus 91 g~~~~~~~~~f~~a----~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~-~lL~~l~--------~~---~~~~~ 154 (301)
T 3cf0_A 91 GESEANVREIFDKA----RQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVIN-QILTEMD--------GM---STKKN 154 (301)
T ss_dssp TTCTTHHHHHHHHH----HHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHH-HHHHHHH--------SS---CTTSS
T ss_pred CchHHHHHHHHHHH----HhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHH-HHHHHhh--------cc---cCCCC
Confidence 99999999999999 788999999999999987654211 1112233333 3445555 33 34567
Q ss_pred ceEEEEeCCCCCCChhhhcCCCceEEEe--CCCHHHHHHHHHHhccCC----CCChhHHHHHhcCCCchhhHH
Q 012383 269 VPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF 335 (465)
Q Consensus 269 V~VI~TTN~~~~LD~ALlR~GRfd~~i~--~P~~e~R~~Il~~~l~~~----~v~~~~la~lt~gfsgadld~ 335 (465)
|+||+|||+++.||++++|+|||++.++ +|+.++|.+|++.+++.. +++.+.++..+.+|+|+||..
T Consensus 155 v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~ 227 (301)
T 3cf0_A 155 VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTE 227 (301)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHH
T ss_pred EEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHH
Confidence 9999999999999999999999999888 999999999999998754 456779999999999998864
No 14
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.96 E-value=4.5e-29 Score=246.36 Aligned_cols=205 Identities=22% Similarity=0.328 Sum_probs=152.5
Q ss_pred ccccccCCCCCchhHHHHHHHHHHH-hhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCC
Q 012383 114 NLDNTIDGLYIAPAFMDKLVVHITK-NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGE 192 (465)
Q Consensus 114 ~~~~~~~~~~i~~~~~d~~~~~i~k-~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge 192 (465)
+|+.+.|-..+...+.+.+...... ..+...++.+|+|+||+||||||||+|+++||.+++.+++.+++.++.+.|.|+
T Consensus 8 ~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~~~~ 87 (274)
T 2x8a_A 8 TWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGE 87 (274)
T ss_dssp ----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSSTTHH
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhhhhH
Confidence 3466555444444444333333221 122345889999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEE
Q 012383 193 PAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 272 (465)
Q Consensus 193 ~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI 272 (465)
.++.++.+|..+ +...|+|+||||||.++..++.. ......+.+++++ ..++ |. .....++++
T Consensus 88 ~~~~i~~vf~~a----~~~~p~i~~~Deid~~~~~r~~~-~~~~~~~~~~~~l-~~Ls--------gg---~~~~~~i~i 150 (274)
T 2x8a_A 88 SERAVRQVFQRA----KNSAPCVIFFDEVDALCPRRSDR-ETGASVRVVNQLL-TEMD--------GL---EARQQVFIM 150 (274)
T ss_dssp HHHHHHHHHHHH----HHTCSEEEEEETCTTTCC----------CTTHHHHHH-HHHH--------TC---CSTTCEEEE
T ss_pred HHHHHHHHHHHH----HhcCCCeEeeehhhhhhcccCCC-cchHHHHHHHHHH-Hhhh--------cc---cccCCEEEE
Confidence 999999999998 78899999999999998766421 1111223333332 3333 44 556778999
Q ss_pred EEeCCCCCCChhhhcCCCceEEEe--CCCHHHHHHHHHHhccC-------CCCChhHHHHH--hcCCCchhhHH
Q 012383 273 VTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRN-------DNVADDDIVKL--VDTFPGQSIDF 335 (465)
Q Consensus 273 ~TTN~~~~LD~ALlR~GRfd~~i~--~P~~e~R~~Il~~~l~~-------~~v~~~~la~l--t~gfsgadld~ 335 (465)
++||+|+.||+|++||||||+.++ +|+.++|.+|++.+++. .+++.+.++.. ++||+|+||..
T Consensus 151 a~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~ 224 (274)
T 2x8a_A 151 AATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSA 224 (274)
T ss_dssp EEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHH
T ss_pred eecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHH
Confidence 999999999999999999999999 99999999999999853 25666788876 45999999974
No 15
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.96 E-value=3.7e-28 Score=247.77 Aligned_cols=220 Identities=18% Similarity=0.221 Sum_probs=162.8
Q ss_pred cccccccCCCCCchhHHHHHHHHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCC
Q 012383 113 YNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGE 192 (465)
Q Consensus 113 ~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge 192 (465)
.+|+++.|...+...+.+.+...+....+...+.+++++||||||||||||++|+++|++++.+++.++++++.++|.|+
T Consensus 48 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~~~g~ 127 (355)
T 2qp9_X 48 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGE 127 (355)
T ss_dssp CCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSCC---
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhhhcch
Confidence 45577777655555555544444444444445678889999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEE
Q 012383 193 PAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 272 (465)
Q Consensus 193 ~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI 272 (465)
.++.++.+|..| +...|+||||||||.+.+.++.. +.....+++. .|+..++ +.. ....+|+||
T Consensus 128 ~~~~~~~~f~~a----~~~~~~vl~iDEid~l~~~r~~~-~~~~~~~~~~-~ll~~l~--------~~~--~~~~~v~vI 191 (355)
T 2qp9_X 128 SEKLVKQLFAMA----RENKPSIIFIDQVDALTGTRGEG-ESEASRRIKT-ELLVQMN--------GVG--NDSQGVLVL 191 (355)
T ss_dssp CHHHHHHHHHHH----HHTSSEEEEEECGGGGTC-------CTHHHHHHH-HHHHHHH--------HCC-----CCEEEE
T ss_pred HHHHHHHHHHHH----HHcCCeEEEEechHhhcccCCCC-cchHHHHHHH-HHHHHhh--------ccc--ccCCCeEEE
Confidence 999999999998 88899999999999999887532 3333344444 4445555 221 234679999
Q ss_pred EEeCCCCCCChhhhcCCCceEEEe--CCCHHHHHHHHHHhccCCCC--C---hhHHHHHhcCCCchhhHHHHHHHhhhhH
Q 012383 273 VTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNV--A---DDDIVKLVDTFPGQSIDFFGALRARVYD 345 (465)
Q Consensus 273 ~TTN~~~~LD~ALlR~GRfd~~i~--~P~~e~R~~Il~~~l~~~~v--~---~~~la~lt~gfsgadld~~~alra~~~~ 345 (465)
+|||+++.||++++| ||++.++ +|+.++|.+|++.++...+. + .+.|++.++||+|+||.. ++.....
T Consensus 192 ~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~---l~~~A~~ 266 (355)
T 2qp9_X 192 GATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAV---VVKDALM 266 (355)
T ss_dssp EEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHH---HHHHHHH
T ss_pred eecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHH---HHHHHHH
Confidence 999999999999999 9998888 99999999999999876643 3 347899999999999974 3333334
Q ss_pred HHHHHHHH
Q 012383 346 DEVRKWIS 353 (465)
Q Consensus 346 ~~v~~~i~ 353 (465)
.++++...
T Consensus 267 ~a~~~~~~ 274 (355)
T 2qp9_X 267 QPIRKIQS 274 (355)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 45555443
No 16
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.95 E-value=4.2e-27 Score=229.78 Aligned_cols=210 Identities=20% Similarity=0.287 Sum_probs=160.5
Q ss_pred ccccccccCCCCCchhHHHHHHHHHHH-hhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCC
Q 012383 112 TYNLDNTIDGLYIAPAFMDKLVVHITK-NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNA 190 (465)
Q Consensus 112 ~~~~~~~~~~~~i~~~~~d~~~~~i~k-~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~ 190 (465)
.++|+++.|...+...+.+.+...+.. ..+...++.++.++|||||||||||++|+++|++++.+++.++++++...+.
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~ 92 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFI 92 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCST
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHhcc
Confidence 455677776533333332222211111 1112347788999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCce
Q 012383 191 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 270 (465)
Q Consensus 191 Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~ 270 (465)
|+....++.+|..+ ....|+||||||+|.+..++.+.. .......+..|+.+++ .+++. ....+++
T Consensus 93 ~~~~~~~~~~~~~~----~~~~~~vl~iDEid~l~~~~~~~~--~~~~~~~~~~l~~ll~-----~~~~~---~~~~~~~ 158 (285)
T 3h4m_A 93 GEGASLVKDIFKLA----KEKAPSIIFIDEIDAIAAKRTDAL--TGGDREVQRTLMQLLA-----EMDGF---DARGDVK 158 (285)
T ss_dssp THHHHHHHHHHHHH----HHTCSEEEEEETTHHHHBCCSSSC--CGGGGHHHHHHHHHHH-----HHHTT---CSSSSEE
T ss_pred chHHHHHHHHHHHH----HHcCCeEEEEECHHHhcccCcccc--CCccHHHHHHHHHHHH-----HhhCC---CCCCCEE
Confidence 99999999999998 888999999999999988775221 1222333444444444 22223 3456799
Q ss_pred EEEEeCCCCCCChhhhcCCCceEEEe--CCCHHHHHHHHHHhccCC----CCChhHHHHHhcCCCchhhHH
Q 012383 271 IIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF 335 (465)
Q Consensus 271 VI~TTN~~~~LD~ALlR~GRfd~~i~--~P~~e~R~~Il~~~l~~~----~v~~~~la~lt~gfsgadld~ 335 (465)
||+|||+++.||++++|++||++.+. .|+.++|.+|++.++... ..+.+.++..+.||++++|..
T Consensus 159 vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~ 229 (285)
T 3h4m_A 159 IIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKA 229 (285)
T ss_dssp EEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHH
T ss_pred EEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHH
Confidence 99999999999999999999999888 999999999999988754 445679999999999999863
No 17
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.95 E-value=6.5e-27 Score=226.02 Aligned_cols=208 Identities=19% Similarity=0.233 Sum_probs=155.7
Q ss_pred cccccccccCCCCCchhHHHHHHHHHHH-hhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCC
Q 012383 111 RTYNLDNTIDGLYIAPAFMDKLVVHITK-NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN 189 (465)
Q Consensus 111 r~~~~~~~~~~~~i~~~~~d~~~~~i~k-~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~ 189 (465)
...+|+++.|...+...+.+. +..+.. ..+...+.++|+++|||||||||||++|+++|++++.+++.++++++.+.+
T Consensus 7 ~~~~~~~i~G~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~~ 85 (257)
T 1lv7_A 7 IKTTFADVAGCDEAKEEVAEL-VEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMF 85 (257)
T ss_dssp SCCCGGGSCSCHHHHHHTHHH-HHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSC
T ss_pred CCCCHHHhcCcHHHHHHHHHH-HHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHHh
Confidence 345668877764444444321 111111 111234678899999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcc--cchhhHHHHHHHHHhhcCCccccCCCccccCCCC
Q 012383 190 AGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQ--YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP 267 (465)
Q Consensus 190 ~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~--~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~ 267 (465)
.|+..+.++.+|..| ....|++|||||+|.+...+..... .....+.+.. ++..++ +. ....
T Consensus 86 ~~~~~~~~~~~~~~a----~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~-ll~~l~--------~~---~~~~ 149 (257)
T 1lv7_A 86 VGVGASRVRDMFEQA----KKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQ-MLVEMD--------GF---EGNE 149 (257)
T ss_dssp CCCCHHHHHHHHHHH----HTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHH-HHHHHH--------TC---CSSS
T ss_pred hhhhHHHHHHHHHHH----HHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHH-HHHHhh--------Cc---ccCC
Confidence 999999999999998 7788999999999999887642211 1112233333 333344 33 3456
Q ss_pred CceEEEEeCCCCCCChhhhcCCCceEEEe--CCCHHHHHHHHHHhccCCCC----ChhHHHHHhcCCCchhhHH
Q 012383 268 RVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNV----ADDDIVKLVDTFPGQSIDF 335 (465)
Q Consensus 268 ~V~VI~TTN~~~~LD~ALlR~GRfd~~i~--~P~~e~R~~Il~~~l~~~~v----~~~~la~lt~gfsgadld~ 335 (465)
+++||+|||+++.||++++|+|||++.+. +|+.++|.+|++.++....+ +...++..+.||++++|..
T Consensus 150 ~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~ 223 (257)
T 1lv7_A 150 GIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLAN 223 (257)
T ss_dssp CEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHH
T ss_pred CEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHH
Confidence 79999999999999999999999999888 99999999999998876543 3557788899999999873
No 18
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.95 E-value=1.5e-27 Score=250.34 Aligned_cols=223 Identities=17% Similarity=0.199 Sum_probs=158.5
Q ss_pred cccccccccCCCCCchhHHHHHHHHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHh-CCceEEecccccccCC
Q 012383 111 RTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM-GINPIMMSAGELESGN 189 (465)
Q Consensus 111 r~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~el-g~~~i~vs~s~L~s~~ 189 (465)
...+|+.+.|...+...+.+.+...+....+...+..+|+++|||||||||||++|++||+++ +.+|+.++++++.++|
T Consensus 129 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~~ 208 (444)
T 2zan_A 129 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKW 208 (444)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC------
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhhh
Confidence 344667777764444444333333322222222345678999999999999999999999999 8999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCc
Q 012383 190 AGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRV 269 (465)
Q Consensus 190 ~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V 269 (465)
.|+.++.++.+|..+ +...|+||||||||.+++.+... ......++++++| ..++ +.. ....+|
T Consensus 209 ~g~~~~~~~~~f~~a----~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~~~~~lL-~~l~--------~~~--~~~~~v 272 (444)
T 2zan_A 209 LGESEKLVKNLFQLA----RENKPSIIFIDEIDSLCGSRSEN-ESEAARRIKTEFL-VQMQ--------GVG--VDNDGI 272 (444)
T ss_dssp ---CCCTHHHHHHHH----HHSCSEEEEESCTTTTCCCSSCC-CCGGGHHHHHHHH-TTTT--------CSS--CCCSSC
T ss_pred cchHHHHHHHHHHHH----HHcCCeEEEEechHhhccCCCCc-cccHHHHHHHHHH-HHHh--------Ccc--cCCCCE
Confidence 999999999999998 78899999999999999887633 3334445555443 3333 431 135789
Q ss_pred eEEEEeCCCCCCChhhhcCCCceEEEe--CCCHHHHHHHHHHhccCCCC--C---hhHHHHHhcCCCchhhHHHHHHHhh
Q 012383 270 PIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDNV--A---DDDIVKLVDTFPGQSIDFFGALRAR 342 (465)
Q Consensus 270 ~VI~TTN~~~~LD~ALlR~GRfd~~i~--~P~~e~R~~Il~~~l~~~~v--~---~~~la~lt~gfsgadld~~~alra~ 342 (465)
+||+|||+++.||++|+| ||++.++ +|+.++|.+|++.++...+. + .+.|++.++||+|+||.. ++..
T Consensus 273 ~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~---l~~~ 347 (444)
T 2zan_A 273 LVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISI---IVRD 347 (444)
T ss_dssp EEEEEESCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHH---HHHH
T ss_pred EEEecCCCccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHH---HHHH
Confidence 999999999999999999 9998888 99999999999999876543 3 347899999999999974 3333
Q ss_pred hhHHHHHHHHHh
Q 012383 343 VYDDEVRKWISG 354 (465)
Q Consensus 343 ~~~~~v~~~i~~ 354 (465)
....++++.+..
T Consensus 348 a~~~a~r~~~~~ 359 (444)
T 2zan_A 348 ALMQPVRKVQSA 359 (444)
T ss_dssp HHTHHHHHHHHC
T ss_pred HHHHHHHHHHhh
Confidence 334456666544
No 19
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.95 E-value=9.5e-28 Score=230.54 Aligned_cols=175 Identities=23% Similarity=0.354 Sum_probs=133.8
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEeccccc
Q 012383 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA 223 (465)
Q Consensus 144 ~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDa 223 (465)
.|.++|+++|||||||||||++|+++|++++.+++.++++++.+.+.|.++..++.+|..+ ....|+||||||+|.
T Consensus 34 ~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a----~~~~~~vl~iDeid~ 109 (262)
T 2qz4_A 34 LGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEA----RARAPCIVYIDEIDA 109 (262)
T ss_dssp --CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTTHHHHHHHHHHHHH----HHTCSEEEEEECC--
T ss_pred cCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccChhHHHHHHHHHHH----HhcCCeEEEEeCcch
Confidence 4678899999999999999999999999999999999999999999999999999999998 777899999999999
Q ss_pred ccCCCCCCcc---cchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhhcCCCceEEEe--CC
Q 012383 224 GAGRMGGTTQ---YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--AP 298 (465)
Q Consensus 224 i~~~r~~~~~---~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~--~P 298 (465)
+...+..... .......+..+| +.++ +. ....+++||+|||.++.||++++|+|||++.++ .|
T Consensus 110 l~~~~~~~~~~~~~~~~~~~l~~ll-~~~~--------~~---~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p 177 (262)
T 2qz4_A 110 VGKKRSTTMSGFSNTEEEQTLNQLL-VEMD--------GM---GTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLP 177 (262)
T ss_dssp -----------------CHHHHHHH-HHHH--------TC---CTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSC
T ss_pred hhccccccccCccchhHHHHHHHHH-HHhh--------Cc---CCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCc
Confidence 9877642110 111122233222 2333 22 334689999999999999999999999999888 99
Q ss_pred CHHHHHHHHHHhccCCCCCh------hHHHHHhcCCCchhhH
Q 012383 299 TREDRIGVCKGIFRNDNVAD------DDIVKLVDTFPGQSID 334 (465)
Q Consensus 299 ~~e~R~~Il~~~l~~~~v~~------~~la~lt~gfsgadld 334 (465)
+.++|.+|++.++...++.. +.+++.+.||++++|.
T Consensus 178 ~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~ 219 (262)
T 2qz4_A 178 TLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIA 219 (262)
T ss_dssp CHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHH
Confidence 99999999999887654442 4678888999998876
No 20
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.95 E-value=5e-28 Score=257.97 Aligned_cols=207 Identities=19% Similarity=0.243 Sum_probs=159.4
Q ss_pred cccccccccCCCCCchhHHHHHHHHHHHh--hhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccC
Q 012383 111 RTYNLDNTIDGLYIAPAFMDKLVVHITKN--FMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 188 (465)
Q Consensus 111 r~~~~~~~~~~~~i~~~~~d~~~~~i~k~--~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~ 188 (465)
..++|+++.|......++.+- +.. .++ .+...+.++|+|+|||||||||||+||++||++++.+++.++++++.+.
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~l-v~~-l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~ 103 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEI-VEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM 103 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHH-HHH-HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSS
T ss_pred CCCCHHHcCCcHHHHHHHHHH-HHH-hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHh
Confidence 566778887764433333321 111 111 1234578899999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCc--ccchhhHHHHHHHHHhhcCCccccCCCccccCCC
Q 012383 189 NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT--QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEEN 266 (465)
Q Consensus 189 ~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~--~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~ 266 (465)
+.|...+.++.+|+.+ +...||||||||||.+...+.... ......+.+++ ++. .+++. ...
T Consensus 104 ~~g~~~~~v~~lfq~a----~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~----LL~-----~Ldg~---~~~ 167 (499)
T 2dhr_A 104 FVGVGAARVRDLFETA----KRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQ----LLV-----EMDGF---EKD 167 (499)
T ss_dssp CTTHHHHHHHHHTTTS----SSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHH----HHH-----HGGGC---CSS
T ss_pred hhhhHHHHHHHHHHHH----HhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHH----HHH-----Hhccc---ccC
Confidence 9999999999999988 667899999999999987764211 11112233333 222 23344 455
Q ss_pred CCceEEEEeCCCCCCChhhhcCCCceEEEe--CCCHHHHHHHHHHhccCCC----CChhHHHHHhcCCCchhhHH
Q 012383 267 PRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDN----VADDDIVKLVDTFPGQSIDF 335 (465)
Q Consensus 267 ~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~--~P~~e~R~~Il~~~l~~~~----v~~~~la~lt~gfsgadld~ 335 (465)
..+++|++||+|+.||++++|+||||+.+. +|+.++|.+|++.+++... ++...++..+.||+|++|..
T Consensus 168 ~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~ 242 (499)
T 2dhr_A 168 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLEN 242 (499)
T ss_dssp CCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHH
T ss_pred ccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHH
Confidence 678999999999999999999999999998 9999999999999986543 44568899999999999974
No 21
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.94 E-value=1.7e-26 Score=245.66 Aligned_cols=175 Identities=21% Similarity=0.297 Sum_probs=151.1
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEeccccc
Q 012383 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA 223 (465)
Q Consensus 144 ~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDa 223 (465)
.+.++|+++|||||||||||++|++||++++.+|+.++++++.+.+.|+....++.+|..| ....|+||||||||.
T Consensus 233 ~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~g~~~~~~~~~f~~A----~~~~p~iLfLDEId~ 308 (489)
T 3hu3_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA----EKNAPAIIFIDELDA 308 (489)
T ss_dssp HTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTTHHHHHHHHHHHHH----HHTCSEEEEEESHHH
T ss_pred cCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhcchhHHHHHHHHHHH----HhcCCcEEEecchhh
Confidence 3688999999999999999999999999999999999999999999999999999999999 888999999999999
Q ss_pred ccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhhcCCCceEEEe--CCCHH
Q 012383 224 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 301 (465)
Q Consensus 224 i~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~--~P~~e 301 (465)
+.+++... .. .....+...|+.+++ +. ....++.||+|||+++.||++++|+|||++.++ +|+.+
T Consensus 309 l~~~~~~~-~~-~~~~~~~~~LL~~ld--------~~---~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~ 375 (489)
T 3hu3_A 309 IAPKREKT-HG-EVERRIVSQLLTLMD--------GL---KQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDAT 375 (489)
T ss_dssp HCBCTTSC-CC-HHHHHHHHHHHHHHH--------HS---CTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHH
T ss_pred hccccccc-cc-hHHHHHHHHHHHHhh--------cc---ccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHH
Confidence 99887522 22 233445556666766 33 345679999999999999999999999999888 99999
Q ss_pred HHHHHHHHhccCCC----CChhHHHHHhcCCCchhhHH
Q 012383 302 DRIGVCKGIFRNDN----VADDDIVKLVDTFPGQSIDF 335 (465)
Q Consensus 302 ~R~~Il~~~l~~~~----v~~~~la~lt~gfsgadld~ 335 (465)
+|.+|++.+++... ++.+.++..+.||++++|..
T Consensus 376 eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~ 413 (489)
T 3hu3_A 376 GRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAA 413 (489)
T ss_dssp HHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHH
T ss_pred HHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHH
Confidence 99999999987643 44578999999999999863
No 22
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.93 E-value=9.9e-26 Score=217.36 Aligned_cols=208 Identities=19% Similarity=0.249 Sum_probs=153.0
Q ss_pred cccccccccCCCCCchhHHHHHHHHHH-HhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCC
Q 012383 111 RTYNLDNTIDGLYIAPAFMDKLVVHIT-KNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN 189 (465)
Q Consensus 111 r~~~~~~~~~~~~i~~~~~d~~~~~i~-k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~ 189 (465)
..++|+++.+...+..++.+ +..... ...+...+..+|+|++|+||||||||++++++++.++.+++.+++..+.+.+
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~-l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~~ 89 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKE-IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 89 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHH-HHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSC
T ss_pred CCCCHHHhCCcHHHHHHHHH-HHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHHH
Confidence 44667887776433333322 111111 1122335778899999999999999999999999999999999999998888
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCc--ccchhhHHHHHHHHHhhcCCccccCCCccccCCCC
Q 012383 190 AGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT--QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP 267 (465)
Q Consensus 190 ~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~--~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~ 267 (465)
.|+..+.++.+|+.+ ....|+++||||||.+...+.... ......+.+.+++ ..++ +. ....
T Consensus 90 ~~~~~~~i~~~~~~~----~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll-~~l~--------g~---~~~~ 153 (254)
T 1ixz_A 90 VGVGAARVRDLFETA----KRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL-VEMD--------GF---EKDT 153 (254)
T ss_dssp TTHHHHHHHHHHHHH----TTSSSEEEEEETHHHHHC---------CHHHHHHHHHHH-HHHH--------TC---CTTC
T ss_pred hhHHHHHHHHHHHHH----HhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHH-HHHh--------CC---CCCC
Confidence 998888899999988 667899999999999987664210 1112223333332 3333 33 3445
Q ss_pred CceEEEEeCCCCCCChhhhcCCCceEEEe--CCCHHHHHHHHHHhccCC----CCChhHHHHHhcCCCchhhHH
Q 012383 268 RVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF 335 (465)
Q Consensus 268 ~V~VI~TTN~~~~LD~ALlR~GRfd~~i~--~P~~e~R~~Il~~~l~~~----~v~~~~la~lt~gfsgadld~ 335 (465)
.++++++||+|+.||++++|+|||++.++ .|+.++|.+|++.+.+.. .++...++..++||+|+||..
T Consensus 154 ~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~ 227 (254)
T 1ixz_A 154 AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLEN 227 (254)
T ss_dssp CEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHH
T ss_pred CEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHH
Confidence 67899999999999999999999999998 999999999999887654 344668999999999999863
No 23
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.93 E-value=2.6e-25 Score=218.55 Aligned_cols=208 Identities=15% Similarity=0.241 Sum_probs=149.7
Q ss_pred ccccccccCCCCCchhHHHHHHHHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCC
Q 012383 112 TYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAG 191 (465)
Q Consensus 112 ~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~G 191 (465)
..+|+++.|...+...+.+.+.......-+......+++++|||||||||||++|+++|++++.+++.++++++.+.+.|
T Consensus 17 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~~ 96 (297)
T 3b9p_A 17 KVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVG 96 (297)
T ss_dssp CCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSSCS
T ss_pred CCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhcccc
Confidence 34567777764333333322222222111111122467999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceE
Q 012383 192 EPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI 271 (465)
Q Consensus 192 e~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~V 271 (465)
+.+..++.+|..+ ....|+||||||+|.+...+... ......+... .|+..++ +........++.|
T Consensus 97 ~~~~~~~~~~~~~----~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~~~~-~ll~~l~--------~~~~~~~~~~v~v 162 (297)
T 3b9p_A 97 DGEKLVRALFAVA----RHMQPSIIFIDEVDSLLSERSSS-EHEASRRLKT-EFLVEFD--------GLPGNPDGDRIVV 162 (297)
T ss_dssp CHHHHHHHHHHHH----HHTCSEEEEEETGGGTSBCC------CCSHHHHH-HHHHHHH--------HCC------CEEE
T ss_pred hHHHHHHHHHHHH----HHcCCcEEEeccHHHhccccccC-cchHHHHHHH-HHHHHHh--------cccccCCCCcEEE
Confidence 9999999999988 78899999999999998876522 1222233333 3444444 2211122357899
Q ss_pred EEEeCCCCCCChhhhcCCCceEEEe--CCCHHHHHHHHHHhccCCC--CChh---HHHHHhcCCCchhhHH
Q 012383 272 IVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDN--VADD---DIVKLVDTFPGQSIDF 335 (465)
Q Consensus 272 I~TTN~~~~LD~ALlR~GRfd~~i~--~P~~e~R~~Il~~~l~~~~--v~~~---~la~lt~gfsgadld~ 335 (465)
|+|||+++.||++++| ||+..++ +|+.++|..|++.++...+ ++.+ .+++.+.||+|++|..
T Consensus 163 i~~tn~~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~ 231 (297)
T 3b9p_A 163 LAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTA 231 (297)
T ss_dssp EEEESCGGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHH
T ss_pred EeecCChhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHH
Confidence 9999999999999999 8887777 9999999999999886543 3433 6788899999999863
No 24
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.93 E-value=3.4e-25 Score=225.75 Aligned_cols=207 Identities=16% Similarity=0.259 Sum_probs=151.4
Q ss_pred ccccccccCCCCCchhHHHHHHHHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCC
Q 012383 112 TYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAG 191 (465)
Q Consensus 112 ~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~G 191 (465)
..+|+++.|...+...+.+.+...+....+......+|+++|||||||||||++|+++|++++.+++.++++++.+.|.|
T Consensus 80 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~g 159 (357)
T 3d8b_A 80 PVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVG 159 (357)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSSTT
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccccc
Confidence 44567777653333333332222222111111134678999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceE
Q 012383 192 EPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPI 271 (465)
Q Consensus 192 e~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~V 271 (465)
+.++.++.+|..+ ....|+||||||||.+...+... ......+.+. .|+..++ +.. .....++.|
T Consensus 160 ~~~~~~~~~~~~a----~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~~~~-~lL~~l~--------~~~-~~~~~~v~v 224 (357)
T 3d8b_A 160 EGEKMVRALFAVA----RCQQPAVIFIDEIDSLLSQRGDG-EHESSRRIKT-EFLVQLD--------GAT-TSSEDRILV 224 (357)
T ss_dssp HHHHHHHHHHHHH----HHTCSEEEEEETHHHHTBC-------CHHHHHHH-HHHHHHH--------C-----CCCCEEE
T ss_pred hHHHHHHHHHHHH----HhcCCeEEEEeCchhhhccCCCC-cchHHHHHHH-HHHHHHh--------ccc-ccCCCCEEE
Confidence 9999999999988 77889999999999998877522 2222333333 3444444 221 123467899
Q ss_pred EEEeCCCCCCChhhhcCCCceEEEe--CCCHHHHHHHHHHhccCCC--CCh---hHHHHHhcCCCchhhHH
Q 012383 272 IVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDN--VAD---DDIVKLVDTFPGQSIDF 335 (465)
Q Consensus 272 I~TTN~~~~LD~ALlR~GRfd~~i~--~P~~e~R~~Il~~~l~~~~--v~~---~~la~lt~gfsgadld~ 335 (465)
|+|||+++.|+++++| ||+..++ +|+.++|.+|++.++...+ ++. +.+++.++||+|++|..
T Consensus 225 I~atn~~~~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~ 293 (357)
T 3d8b_A 225 VGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQ 293 (357)
T ss_dssp EEEESCGGGBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHH
T ss_pred EEecCChhhCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHH
Confidence 9999999999999999 9987777 9999999999999886643 443 36788899999999874
No 25
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.93 E-value=5.7e-27 Score=227.16 Aligned_cols=207 Identities=17% Similarity=0.231 Sum_probs=151.9
Q ss_pred ccccccccCCCCCchhHHHHHHHHHH-HhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCC
Q 012383 112 TYNLDNTIDGLYIAPAFMDKLVVHIT-KNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNA 190 (465)
Q Consensus 112 ~~~~~~~~~~~~i~~~~~d~~~~~i~-k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~ 190 (465)
.++|+++.|...+...+.+.+. .+. ...+...+.++|+++|||||||||||++|+++|++++.+++.++++.+.+.+.
T Consensus 7 ~~~~~~i~G~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~ 85 (268)
T 2r62_A 7 NVRFKDMAGNEEAKEEVVEIVD-FLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFV 85 (268)
T ss_dssp CCCSTTSSSCTTTHHHHHHHHH-HHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSCS
T ss_pred CCCHHHhCCcHHHHHHHHHHHH-HHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhhc
Confidence 4567888877666665543222 111 11122346788999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcc---cchhhHHHHHHHHHhhcCCccccCCCccccCCCC
Q 012383 191 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQ---YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP 267 (465)
Q Consensus 191 Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~---~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~ 267 (465)
|..+..++.+|..+ ....|+||||||+|.+...+..... .....+.+. .++. .+++.. ....
T Consensus 86 ~~~~~~~~~~~~~a----~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~----~ll~-----~l~~~~--~~~~ 150 (268)
T 2r62_A 86 GLGASRVRDLFETA----KKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLN----QLLA-----EMDGFG--SENA 150 (268)
T ss_dssp SSCSSSSSTTHHHH----HHSCSCEEEESCGGGTTC----------CCCSCSSTT----TTTT-----TTTCSS--CSCS
T ss_pred chHHHHHHHHHHHH----HhcCCeEEEEeChhhhcccccccccCCCchhHHHHHH----HHHH-----HhhCcc--cCCC
Confidence 98888888899988 7778999999999999877531110 000011111 1111 222221 1245
Q ss_pred CceEEEEeCCCCCCChhhhcCCCceEEEe--CCCHHHHHHHHHHhccCC----CCChhHHHHHhcCCCchhhH
Q 012383 268 RVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSID 334 (465)
Q Consensus 268 ~V~VI~TTN~~~~LD~ALlR~GRfd~~i~--~P~~e~R~~Il~~~l~~~----~v~~~~la~lt~gfsgadld 334 (465)
+++||+|||+++.||++++|+|||+..++ .|+.++|.+|++.++... +++.+.+++.+.||+|++|.
T Consensus 151 ~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~ 223 (268)
T 2r62_A 151 PVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLA 223 (268)
T ss_dssp CCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHH
T ss_pred CEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHH
Confidence 68999999999999999999999998888 999999999999988754 34456788889999998876
No 26
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.93 E-value=5.3e-25 Score=226.26 Aligned_cols=208 Identities=17% Similarity=0.245 Sum_probs=143.1
Q ss_pred cccccccccCCCCCchhHHHHHHHHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCC
Q 012383 111 RTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNA 190 (465)
Q Consensus 111 r~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~ 190 (465)
+..+|+.++|...+...+.+.+........+......++++||||||||||||++|++||++++.+|+.++++++.+.|.
T Consensus 110 ~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~ 189 (389)
T 3vfd_A 110 TAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYV 189 (389)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-----
T ss_pred CCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhcccc
Confidence 44567888886444433333322222211111112245789999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCce
Q 012383 191 GEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVP 270 (465)
Q Consensus 191 Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~ 270 (465)
|+.+..++.+|..+ +...|+||||||||.++..+... ......++.. .|+..++ +. ......+|+
T Consensus 190 g~~~~~~~~~~~~a----~~~~~~il~iDEid~l~~~~~~~-~~~~~~~~~~-~ll~~l~--------~~-~~~~~~~v~ 254 (389)
T 3vfd_A 190 GEGEKLVRALFAVA----RELQPSIIFIDQVDSLLCERREG-EHDASRRLKT-EFLIEFD--------GV-QSAGDDRVL 254 (389)
T ss_dssp --CHHHHHHHHHHH----HHSSSEEEEEETGGGGC---------CTHHHHHH-HHHHHHH--------HH-C-----CEE
T ss_pred chHHHHHHHHHHHH----HhcCCeEEEEECchhhcccCCCc-cchHHHHHHH-HHHHHhh--------cc-cccCCCCEE
Confidence 99999999999998 88899999999999998876522 2222333433 3444444 22 112246799
Q ss_pred EEEEeCCCCCCChhhhcCCCceEEEe--CCCHHHHHHHHHHhccCCC--CChh---HHHHHhcCCCchhhHH
Q 012383 271 IIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDN--VADD---DIVKLVDTFPGQSIDF 335 (465)
Q Consensus 271 VI~TTN~~~~LD~ALlR~GRfd~~i~--~P~~e~R~~Il~~~l~~~~--v~~~---~la~lt~gfsgadld~ 335 (465)
||+|||+++.||++++| ||+..++ .|+.++|.+|++.++...+ ++.+ .++..++||++++|..
T Consensus 255 vI~atn~~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~ 324 (389)
T 3vfd_A 255 VMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTA 324 (389)
T ss_dssp EEEEESCGGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHH
T ss_pred EEEecCCchhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHH
Confidence 99999999999999999 8987676 9999999999999887654 3433 6788899999998864
No 27
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.92 E-value=2.4e-27 Score=265.69 Aligned_cols=176 Identities=21% Similarity=0.369 Sum_probs=145.5
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEeccccc
Q 012383 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA 223 (465)
Q Consensus 144 ~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDa 223 (465)
.++.++.++|||||||||||++|++||++++.+++.++++++.++|+|+.++.++.+|+.| +...||||||||||+
T Consensus 506 ~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a----~~~~p~vl~iDEid~ 581 (806)
T 1ypw_A 506 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA----RQAAPCVLFFDELDS 581 (806)
T ss_dssp CCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHHHHHH----HHHCSBCCCCSSHHH
T ss_pred cCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhhcCccHHHHHHHHHHH----HhcCCeEEEEEChhh
Confidence 4678889999999999999999999999999999999999999999999999999999999 888899999999999
Q ss_pred ccCCCCCCcc--cchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhhcCCCceEEEe--CCC
Q 012383 224 GAGRMGGTTQ--YTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 299 (465)
Q Consensus 224 i~~~r~~~~~--~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~--~P~ 299 (465)
++..|++... .....++++ .|++ .|++. ....+|+||+|||+++.||+|++|||||++.++ +|+
T Consensus 582 l~~~r~~~~~~~~~~~~~v~~-~LL~--------~ld~~---~~~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~ 649 (806)
T 1ypw_A 582 IAKARGGNIGDGGGAADRVIN-QILT--------EMDGM---STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 649 (806)
T ss_dssp HCCTTTTCCSHHHHHHHHHHH-HHHT--------TCC---------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCC
T ss_pred hhhhccCCCCCcchhHHHHHH-HHHH--------HHhcc---cccCCeEEEEecCCcccCCHHHhCccccCceeecCCCC
Confidence 9988863321 112233333 3333 33354 455789999999999999999999999998888 999
Q ss_pred HHHHHHHHHHhccCC----CCChhHHHHHhcCCCchhhHH
Q 012383 300 REDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF 335 (465)
Q Consensus 300 ~e~R~~Il~~~l~~~----~v~~~~la~lt~gfsgadld~ 335 (465)
.++|.+|++.+++.. +++.+.+++.+++|+|++|..
T Consensus 650 ~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~ 689 (806)
T 1ypw_A 650 EKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTE 689 (806)
T ss_dssp CSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHH
T ss_pred HHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHHH
Confidence 999999999999764 345568889999999999974
No 28
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.92 E-value=1.4e-24 Score=212.67 Aligned_cols=207 Identities=19% Similarity=0.256 Sum_probs=151.4
Q ss_pred cccccccccCCCCCchhHHHHHHHHHH-HhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCC
Q 012383 111 RTYNLDNTIDGLYIAPAFMDKLVVHIT-KNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN 189 (465)
Q Consensus 111 r~~~~~~~~~~~~i~~~~~d~~~~~i~-k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~ 189 (465)
..++|+++.+...+..++.+ +..... ...+...+...|+|++|+||||||||+|+++|+..++..++.+++..+.+.+
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~-l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~ 113 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKE-IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 113 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHH-HHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHST
T ss_pred CCCCHHHhCChHHHHHHHHH-HHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHH
Confidence 34566777665333333221 111110 1112334778899999999999999999999999999999999999998888
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCc--ccchhhHHHHHHHHHhhcCCccccCCCccccCCCC
Q 012383 190 AGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTT--QYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP 267 (465)
Q Consensus 190 ~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~--~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~ 267 (465)
.|+..+.++.+|+.+ ....|+++||||||.+...+.... ......+.+.+++ ..++ +. ....
T Consensus 114 ~~~~~~~i~~~~~~~----~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll-~~ls--------gg---~~~~ 177 (278)
T 1iy2_A 114 VGVGAARVRDLFETA----KRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL-VEMD--------GF---EKDT 177 (278)
T ss_dssp TTHHHHHHHHHHHHH----HTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHH-HHHT--------TC---CTTC
T ss_pred hhHHHHHHHHHHHHH----HhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHH-HHHh--------CC---CCCC
Confidence 888888899999988 667899999999999876654210 1111223333322 2222 33 3445
Q ss_pred CceEEEEeCCCCCCChhhhcCCCceEEEe--CCCHHHHHHHHHHhccCC----CCChhHHHHHhcCCCchhhH
Q 012383 268 RVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSID 334 (465)
Q Consensus 268 ~V~VI~TTN~~~~LD~ALlR~GRfd~~i~--~P~~e~R~~Il~~~l~~~----~v~~~~la~lt~gfsgadld 334 (465)
.++++++||+|+.||++++|++||++.++ .|+.++|.+|++.+++.. .++...++..++||+|++|.
T Consensus 178 ~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~ 250 (278)
T 1iy2_A 178 AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLE 250 (278)
T ss_dssp CEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHH
T ss_pred CEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHH
Confidence 68899999999999999999999999988 999999999999887654 34456889999999999986
No 29
>3thg_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; four-helix bundle, rubisco reactivation, chloroplast stroma, ATPase; 1.88A {Larrea tridentata}
Probab=99.90 E-value=5.5e-24 Score=179.28 Aligned_cols=104 Identities=84% Similarity=1.305 Sum_probs=97.3
Q ss_pred CCCHHHHHHHHHHhccCCCCChhHHHHHhcCCCchhhHHHHHHHhhhhHHHHHHHHHhhcCccchhhhhcCcCCCCCCCC
Q 012383 297 APTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVGSIGKSLVNSKEAAPTFEQ 376 (465)
Q Consensus 297 ~P~~e~R~~Il~~~l~~~~v~~~~la~lt~gfsgadld~~~alra~~~~~~v~~~i~~~~~e~l~~~lv~~~~~~~~f~~ 376 (465)
+-++++|..|++.++++++++.+++.++++.|++|+||||||||+|+|+++|++||..+|.|+++++++++++++|.|++
T Consensus 4 ~~treDrigiv~gif~~Dgls~~dv~~LVd~Fp~QsiDFFGALRsR~YDd~Vr~wI~~vG~e~ig~~Lvns~e~~P~F~~ 83 (107)
T 3thg_A 4 PFTREDRIGVCKGIFRTDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWVSEVGVDTIGKKLVNSKEGPPSFEQ 83 (107)
T ss_dssp CCCHHHHHHHHHHHTTTTTCCHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCC
T ss_pred CccHHHHHHHHHHHhccCCCCHHHHHHHHHcCCCCCchHHHHHHHHHhHHHHHHHHHHhCHHHHhHHHHcCCCCCCCCCC
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCHHHHHHHHHHHHHHhhhhhh
Q 012383 377 PRMTMEKLLEYGNMIVQEQENVKR 400 (465)
Q Consensus 377 ~~~~~~~lle~g~~lv~eqe~v~~ 400 (465)
|.+|+++|+++|+++++||++|++
T Consensus 84 P~~tl~~Lle~G~~Lv~EQ~~V~~ 107 (107)
T 3thg_A 84 PKMTIDKLLGYGGMLVQEQENVKR 107 (107)
T ss_dssp CCCCHHHHHHHHHHHHTTC-----
T ss_pred CcCCHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999874
No 30
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.89 E-value=2.8e-22 Score=224.78 Aligned_cols=208 Identities=18% Similarity=0.251 Sum_probs=169.2
Q ss_pred cccccccccCCCCCchhHHHHHHHHHHHh-hhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCC
Q 012383 111 RTYNLDNTIDGLYIAPAFMDKLVVHITKN-FMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN 189 (465)
Q Consensus 111 r~~~~~~~~~~~~i~~~~~d~~~~~i~k~-~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~ 189 (465)
..++|+.+.|.......+.+.+...+... .+...+++++.++|||||||||||++|++||++++.+++.++++++.+.+
T Consensus 199 ~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~ 278 (806)
T 1ypw_A 199 NEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (806)
T ss_dssp SSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSS
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhh
Confidence 34567888887666666655544433322 33456889999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCc
Q 012383 190 AGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRV 269 (465)
Q Consensus 190 ~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V 269 (465)
.|+.++.++.+|..+ ....|++|||||||.++..++. .... ..+.+...|+.+++ +. .....+
T Consensus 279 ~g~~~~~l~~vf~~a----~~~~p~il~iDEid~l~~~~~~-~~~~-~~~~~~~~Ll~ll~--------g~---~~~~~v 341 (806)
T 1ypw_A 279 AGESESNLRKAFEEA----EKNAPAIIFIDELDAIAPKREK-THGE-VERRIVSQLLTLMD--------GL---KQRAHV 341 (806)
T ss_dssp TTHHHHHHHHHHHHH----HHHCSEEEEEESGGGTSCTTSC-CCSH-HHHHHHHHHHHHHH--------SS---CTTSCC
T ss_pred hhhHHHHHHHHHHHH----HhcCCcEEEeccHHHhhhcccc-ccch-HHHHHHHHHHHHhh--------hh---cccccE
Confidence 999999999999998 7778999999999999988752 2222 23344445666766 44 445789
Q ss_pred eEEEEeCCCCCCChhhhcCCCceEEEe--CCCHHHHHHHHHHhccCCC----CChhHHHHHhcCCCchhhHH
Q 012383 270 PIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDN----VADDDIVKLVDTFPGQSIDF 335 (465)
Q Consensus 270 ~VI~TTN~~~~LD~ALlR~GRfd~~i~--~P~~e~R~~Il~~~l~~~~----v~~~~la~lt~gfsgadld~ 335 (465)
.+|+|||+++.||+++.|+|||++.+. .|+.++|.+|++.++.... .+...++..+.+|+++++..
T Consensus 342 ~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~ 413 (806)
T 1ypw_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAA 413 (806)
T ss_dssp EEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHH
T ss_pred EEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHH
Confidence 999999999999999999999999888 9999999999999887643 44568999999999999863
No 31
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.85 E-value=1.3e-23 Score=220.90 Aligned_cols=174 Identities=10% Similarity=0.028 Sum_probs=115.6
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHHHHhC--CceEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEeccc
Q 012383 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKMG--INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDL 221 (465)
Q Consensus 144 ~~~~~p~glLL~GPPGtGKT~LAraIA~elg--~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEI 221 (465)
.+..+|+++|||||||||||++|+++|++++ .+|+.++++++.++|+|++++ +++.|+.|.. .+...||||||||+
T Consensus 58 ~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~f~~a~~-~~~~~~~il~iDEi 135 (456)
T 2c9o_A 58 SKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEV-LMENFRRAIG-LRIKETKEVYEGEV 135 (456)
T ss_dssp TTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSSSCHHHH-HHHHHHHTEE-EEEEEEEEEEEEEE
T ss_pred hCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHHhhhhhHH-HHHHHHHHHh-hhhcCCcEEEEech
Confidence 3566789999999999999999999999999 999999999999999999988 8899987621 13568999999999
Q ss_pred ccccCCCCCCcccc---hhhH---------------HHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCCh
Q 012383 222 DAGAGRMGGTTQYT---VNNQ---------------MVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYA 283 (465)
Q Consensus 222 Dai~~~r~~~~~~~---v~~~---------------~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ 283 (465)
|+++++|....... ...+ +... ++..++ ..+. .....|+|++|||+++.+|+
T Consensus 136 d~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-ll~~l~------~~~~---~~~~~v~i~attn~~~~ld~ 205 (456)
T 2c9o_A 136 TELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPS-IFESLQ------KERV---EAGDVIYIEANSGAVKRQGR 205 (456)
T ss_dssp EEEEEC--------------CEEEEEEETTEEEEEEECHH-HHHHHH------HTTC---CTTEEEEEETTTCCEEEEEE
T ss_pred hhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHH-HHHHHh------hccC---CCCCEEEEEcCCCCcccCCh
Confidence 99998876321100 0000 0111 111111 0011 22344666799999999999
Q ss_pred hhhcCCCceE----EEeCCC--HHHHHHHHHHhccCCCCChhHHHHHhcCCCchhhH
Q 012383 284 PLIRDGRMEK----FYWAPT--REDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSID 334 (465)
Q Consensus 284 ALlR~GRfd~----~i~~P~--~e~R~~Il~~~l~~~~v~~~~la~lt~gfsgadld 334 (465)
+++|+||||+ .+..|+ .++|.+|++.+... +.+.+++.++| |+||.
T Consensus 206 a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~~---dl~~~a~~t~g--gadl~ 257 (456)
T 2c9o_A 206 CDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTLH---DLDVANARPQG--GQDIL 257 (456)
T ss_dssp ETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEHH---HHHHTC------------
T ss_pred hhcCCcccCcceeEecCCCchhHHHHHHHHHHHHHH---HHHHHHHhCCC--hhHHH
Confidence 9999999999 333664 46788887665532 35566667777 77765
No 32
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.79 E-value=4e-19 Score=172.93 Aligned_cols=169 Identities=12% Similarity=0.116 Sum_probs=117.8
Q ss_pred hhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCChH----HHHHHHHHHHHHHHHhCCce
Q 012383 139 NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPA----KLIRQRYREAADIIKKGKMC 214 (465)
Q Consensus 139 ~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge~~----k~Ir~~F~~A~~~i~~~~p~ 214 (465)
+.+...+..++.++|||||||||||++|+++|++++.+++.+++++ .+.|.+. ..++.+|..+ ....++
T Consensus 54 ~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~---~~~g~~~~~~~~~~~~~~~~~----~~~~~~ 126 (272)
T 1d2n_A 54 QQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPD---KMIGFSETAKCQAMKKIFDDA----YKSQLS 126 (272)
T ss_dssp HHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGG---GCTTCCHHHHHHHHHHHHHHH----HTSSEE
T ss_pred HHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHH---HhcCCchHHHHHHHHHHHHHH----HhcCCc
Confidence 3444445677899999999999999999999999999999987765 3455443 4567777777 667899
Q ss_pred EEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhhcCCCceEE
Q 012383 215 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF 294 (465)
Q Consensus 215 ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~ 294 (465)
||||||||.+++.+.... ... ..+.++|..+++ +. .....++.||+|||.++.+++..++ +||+..
T Consensus 127 vl~iDEid~l~~~~~~~~--~~~-~~~l~~L~~~~~--------~~--~~~~~~~~ii~ttn~~~~l~~~~l~-~rf~~~ 192 (272)
T 1d2n_A 127 CVVVDDIERLLDYVPIGP--RFS-NLVLQALLVLLK--------KA--PPQGRKLLIIGTTSRKDVLQEMEML-NAFSTT 192 (272)
T ss_dssp EEEECCHHHHTTCBTTTT--BCC-HHHHHHHHHHTT--------CC--CSTTCEEEEEEEESCHHHHHHTTCT-TTSSEE
T ss_pred EEEEEChhhhhccCCCCh--hHH-HHHHHHHHHHhc--------Cc--cCCCCCEEEEEecCChhhcchhhhh-cccceE
Confidence 999999999987654221 122 233345555555 21 0134568899999999988884333 599999
Q ss_pred EeCCCHHHHHHHHHHhccCCCCChh---HHHHHhcCC
Q 012383 295 YWAPTREDRIGVCKGIFRNDNVADD---DIVKLVDTF 328 (465)
Q Consensus 295 i~~P~~e~R~~Il~~~l~~~~v~~~---~la~lt~gf 328 (465)
+.+|...+|.+|...+.....++.+ .+++.+.+|
T Consensus 193 i~~p~l~~r~~i~~i~~~~~~~~~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 193 IHVPNIATGEQLLEALELLGNFKDKERTTIAQQVKGK 229 (272)
T ss_dssp EECCCEEEHHHHHHHHHHHTCSCHHHHHHHHHHHTTS
T ss_pred EcCCCccHHHHHHHHHHhcCCCCHHHHHHHHHHhcCC
Confidence 8987777776666555544455555 444445554
No 33
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.78 E-value=4.9e-18 Score=167.09 Aligned_cols=150 Identities=12% Similarity=0.107 Sum_probs=117.3
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHhC-------CceEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEe
Q 012383 146 IKVPLILGIWGGKGQGKSFQCELVFAKMG-------INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMI 218 (465)
Q Consensus 146 ~~~p~glLL~GPPGtGKT~LAraIA~elg-------~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfI 218 (465)
.+++.++|||||||||||++|+++|++++ .+++.++++++.+.+.|.....++..|..+ .++||||
T Consensus 64 ~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~-------~~~vl~i 136 (309)
T 3syl_A 64 ETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRA-------MGGVLFI 136 (309)
T ss_dssp SCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCCSSTTCHHHHHHHHHHHH-------TTSEEEE
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhhhcccccHHHHHHHHHhc-------CCCEEEE
Confidence 45567899999999999999999999973 389999999999999999998888888876 4689999
Q ss_pred cccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC-----CCChhhhcCCCceE
Q 012383 219 NDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----TLYAPLIRDGRMEK 293 (465)
Q Consensus 219 DEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~-----~LD~ALlR~GRfd~ 293 (465)
||+|.+++.+.+. .....+...|+++++ ....++.||+|||..+ .++|+|++ ||+.
T Consensus 137 DEid~l~~~~~~~----~~~~~~~~~Ll~~l~-------------~~~~~~~~i~~~~~~~~~~~~~~~~~l~~--R~~~ 197 (309)
T 3syl_A 137 DEAYYLYRPDNER----DYGQEAIEILLQVME-------------NNRDDLVVILAGYADRMENFFQSNPGFRS--RIAH 197 (309)
T ss_dssp ETGGGSCCCC-------CCTHHHHHHHHHHHH-------------HCTTTCEEEEEECHHHHHHHHHHSTTHHH--HEEE
T ss_pred EChhhhccCCCcc----cccHHHHHHHHHHHh-------------cCCCCEEEEEeCChHHHHHHHhhCHHHHH--hCCe
Confidence 9999998765421 122344456667766 2346789999998754 35799998 8987
Q ss_pred EEe--CCCHHHHHHHHHHhccCCC--CChhHH
Q 012383 294 FYW--APTREDRIGVCKGIFRNDN--VADDDI 321 (465)
Q Consensus 294 ~i~--~P~~e~R~~Il~~~l~~~~--v~~~~l 321 (465)
.+. .|+.+++.+|++.++...+ ++.+.+
T Consensus 198 ~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~ 229 (309)
T 3syl_A 198 HIEFPDYSDEELFEIAGHMLDDQNYQMTPEAE 229 (309)
T ss_dssp EEEECCCCHHHHHHHHHHHHHHTTCEECHHHH
T ss_pred EEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 777 9999999999999887544 444433
No 34
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.73 E-value=1.9e-17 Score=177.98 Aligned_cols=167 Identities=19% Similarity=0.285 Sum_probs=112.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEeccccccc---------CCCCChHHHHHHHHHHHHHHHHhCCceEEEe
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES---------GNAGEPAKLIRQRYREAADIIKKGKMCCLMI 218 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s---------~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfI 218 (465)
++..+||+||||||||++|++||..++.+++.++.+.+.. .|+|.....+...|..+ ....| ||||
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a----~~~~~-vl~l 181 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKA----GKLNP-VFLL 181 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------------------CHHHHHHTT----CSSSE-EEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCchHHHHHHHHh----hccCC-EEEE
Confidence 4678999999999999999999999999999988776543 56777767777777776 44555 9999
Q ss_pred cccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCcccc--CCCCCceEEEEeCCCCCCChhhhcCCCceEEEe
Q 012383 219 NDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNK--EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW 296 (465)
Q Consensus 219 DEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~--~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~ 296 (465)
||||++...+.+. ....|++++|..++..+...+.. ....++.||+|||+++.|+++|+| ||+.+..
T Consensus 182 DEid~l~~~~~~~---------~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~--R~~vi~~ 250 (543)
T 3m6a_A 182 DEIDKMSSDFRGD---------PSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRD--RMEIINI 250 (543)
T ss_dssp EESSSCC------------------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHH--HEEEEEC
T ss_pred hhhhhhhhhhccC---------HHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHHHh--hcceeee
Confidence 9999998765321 23456667775443322222111 233788999999999999999998 9975444
Q ss_pred -CCCHHHHHHHHHHhccC------------CCCChhHHHHHhcCCCc
Q 012383 297 -APTREDRIGVCKGIFRN------------DNVADDDIVKLVDTFPG 330 (465)
Q Consensus 297 -~P~~e~R~~Il~~~l~~------------~~v~~~~la~lt~gfsg 330 (465)
.|+.+++.+|++.++.. ..++.+.+..++..|++
T Consensus 251 ~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~ 297 (543)
T 3m6a_A 251 AGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTR 297 (543)
T ss_dssp CCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCCh
Confidence 99999999999888621 13456677777776664
No 35
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.72 E-value=6.2e-18 Score=177.67 Aligned_cols=135 Identities=13% Similarity=0.105 Sum_probs=60.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEeccccccc-CCCCC-hHHHHHHHHHHHHHHHHhCCceEEEecccccc
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES-GNAGE-PAKLIRQRYREAADIIKKGKMCCLMINDLDAG 224 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s-~~~Ge-~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai 224 (465)
.+|+++||+||||||||++|+++|+.++.+|+.++++.+.+ +|+|+ .++.++.+|..|... +++||+|.+
T Consensus 48 ~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d~e~~lr~lf~~a~~~--------~~~De~d~~ 119 (444)
T 1g41_A 48 VTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKL--------VRQQEIAKN 119 (444)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCCTHHHHHHHHHHHHHH--------HHHHHHHSC
T ss_pred cCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeeccHHHHHHHHHHHHHhc--------chhhhhhhh
Confidence 35789999999999999999999999999999999999988 69995 799999999998332 348999987
Q ss_pred cCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEE-eCCCCCCChhhhcCCCceEEEe--CCCHH
Q 012383 225 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVT-GNDFSTLYAPLIRDGRMEKFYW--APTRE 301 (465)
Q Consensus 225 ~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~T-TN~~~~LD~ALlR~GRfd~~i~--~P~~e 301 (465)
..... .....+++.++| . .|+|+. ....| +++ ||+++.||+||+|+||||+.|+ +|+..
T Consensus 120 ~~~~~----~~~e~rvl~~LL-~--------~~dg~~---~~~~v--~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~ 181 (444)
T 1g41_A 120 RARAE----DVAEERILDALL-P--------PAKNQW---GEVEN--HDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGV 181 (444)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred hccch----hhHHHHHHHHHH-H--------Hhhccc---ccccc--ccccccCHHHHHHHHHcCCCcceEEEEcCCCCc
Confidence 65432 222334444333 3 334552 22333 555 9999999999999999999999 88877
Q ss_pred -HHHHHH
Q 012383 302 -DRIGVC 307 (465)
Q Consensus 302 -~R~~Il 307 (465)
.|.+|+
T Consensus 182 ~~~~ei~ 188 (444)
T 1g41_A 182 SMGVEIM 188 (444)
T ss_dssp -------
T ss_pred cchhhhh
Confidence 677775
No 36
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.70 E-value=6.1e-17 Score=158.30 Aligned_cols=157 Identities=17% Similarity=0.141 Sum_probs=113.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEeccccccc-CCCCC-hHHHHHHHHHHHHHHHH-hCCceEEEeccccc
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES-GNAGE-PAKLIRQRYREAADIIK-KGKMCCLMINDLDA 223 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s-~~~Ge-~~k~Ir~~F~~A~~~i~-~~~p~ILfIDEIDa 223 (465)
..|.++|||||||||||++|+++|+.++.+++.++++.+.+ .|+|. ....++.+|..+...+. ...++||||||+|.
T Consensus 48 ~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~ 127 (310)
T 1ofh_A 48 VTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDK 127 (310)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGG
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhh
Confidence 45789999999999999999999999999999999998876 66664 34566776664311112 23478999999999
Q ss_pred ccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEE----eCCCCCCChhhhcCCCceEEEe--C
Q 012383 224 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVT----GNDFSTLYAPLIRDGRMEKFYW--A 297 (465)
Q Consensus 224 i~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~T----TN~~~~LD~ALlR~GRfd~~i~--~ 297 (465)
+...... .........++..|+.++++.......+ .....++.+|++ ++.+..++++|++ ||+..+. .
T Consensus 128 l~~~~~~-~~~~~~~~~~~~~Ll~~le~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~ 201 (310)
T 1ofh_A 128 ICKKGEY-SGADVSREGVQRDLLPLVEGSTVSTKHG---MVKTDHILFIASGAFQVARPSDLIPELQG--RLPIRVELTA 201 (310)
T ss_dssp GSCCSSC-CSSHHHHHHHHHHHHHHHHCCEEEETTE---EEECTTCEEEEEECCSSSCGGGSCHHHHH--TCCEEEECCC
T ss_pred cCccccc-cccchhHHHHHHHHHHHhcCCeEecccc---cccCCcEEEEEcCCcccCCcccCCHHHHh--hCCceEEcCC
Confidence 9877642 2233444555677778887322111111 123467888988 4678899999996 8987666 8
Q ss_pred CCHHHHHHHHHH
Q 012383 298 PTREDRIGVCKG 309 (465)
Q Consensus 298 P~~e~R~~Il~~ 309 (465)
|+.+++.+|++.
T Consensus 202 ~~~~~~~~il~~ 213 (310)
T 1ofh_A 202 LSAADFERILTE 213 (310)
T ss_dssp CCHHHHHHHHHS
T ss_pred cCHHHHHHHHHh
Confidence 899999999984
No 37
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.68 E-value=7.7e-17 Score=144.58 Aligned_cols=136 Identities=18% Similarity=0.190 Sum_probs=96.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHh----------CCceEEecccccc--cCCCCChHHHHHHHHHHHHHHHHhCCce
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKKGKMC 214 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~el----------g~~~i~vs~s~L~--s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ 214 (465)
..+.+++|+||||||||++++++++++ +.+++.++.+.+. ..+.|.....++.++..+ .+...++
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 117 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDL---AKQEGNV 117 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHH---HHSTTTE
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccccHHHHHHHHHHHH---hhcCCCe
Confidence 346789999999999999999999996 7788888887776 344455556666666654 1356789
Q ss_pred EEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC-----CCChhhhcCC
Q 012383 215 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----TLYAPLIRDG 289 (465)
Q Consensus 215 ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~-----~LD~ALlR~G 289 (465)
||||||+|.+...+...... .+...|..+++ ..++.+|++||.+. .++++++|
T Consensus 118 vl~iDe~~~l~~~~~~~~~~-----~~~~~l~~~~~---------------~~~~~~i~~~~~~~~~~~~~~~~~l~~-- 175 (195)
T 1jbk_A 118 ILFIDELHTMVGAGKADGAM-----DAGNMLKPALA---------------RGELHCVGATTLDEYRQYIEKDAALER-- 175 (195)
T ss_dssp EEEEETGGGGTT------CC-----CCHHHHHHHHH---------------TTSCCEEEEECHHHHHHHTTTCHHHHT--
T ss_pred EEEEeCHHHHhccCcccchH-----HHHHHHHHhhc---------------cCCeEEEEeCCHHHHHHHHhcCHHHHH--
Confidence 99999999997654311111 11223333333 24678999999887 78999998
Q ss_pred CceEEEe-CCCHHHHHHHH
Q 012383 290 RMEKFYW-APTREDRIGVC 307 (465)
Q Consensus 290 Rfd~~i~-~P~~e~R~~Il 307 (465)
||+.+.. .|+.++|.+|+
T Consensus 176 r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 176 RFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp TEEEEECCCCCHHHHHTTC
T ss_pred HhceeecCCCCHHHHHHHh
Confidence 8885444 99999998875
No 38
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.68 E-value=1.6e-17 Score=168.71 Aligned_cols=160 Identities=18% Similarity=0.218 Sum_probs=113.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccC-CCCCh-HHHHHHHHHHHHHHHHhCCceEEEecccccc
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG-NAGEP-AKLIRQRYREAADIIKKGKMCCLMINDLDAG 224 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~-~~Ge~-~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai 224 (465)
.++.++||+||||||||++|++||+.++.+|+.++++++... |+|.. ...++..|..+...+....++||||||||++
T Consensus 49 ~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l 128 (363)
T 3hws_A 49 LGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKI 128 (363)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhh
Confidence 367899999999999999999999999999999999988754 77765 5667777766522223456899999999999
Q ss_pred cCCCCCCc-ccchhhHHHHHHHHHhhcCCccccCCCcc---------ccCCCCCceEEEEeCCC----------CC----
Q 012383 225 AGRMGGTT-QYTVNNQMVNATLMNIADNPTCVQLPGMY---------NKEENPRVPIIVTGNDF----------ST---- 280 (465)
Q Consensus 225 ~~~r~~~~-~~~v~~~~v~~~Ll~llD~~~~v~l~g~~---------~~~~~~~V~VI~TTN~~----------~~---- 280 (465)
...+.+.. ...+..+.++..|+.+++. ..+.+.... ......++++|+|+|.. ..
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~Ll~~leg-~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~ 207 (363)
T 3hws_A 129 SRKSDNPSITRDVSGEGVQQALLKLIEG-TVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGI 207 (363)
T ss_dssp CCCSSCC---CHHHHHHHHHHHHHHHHC-C----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC--
T ss_pred cccccccccccccchHHHHHHHHHHhcC-ceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccC
Confidence 88765322 2333444577788888882 211111000 01233566777777753 11
Q ss_pred -------------------------------CChhhhcCCCceEEEe--CCCHHHHHHHHHH
Q 012383 281 -------------------------------LYAPLIRDGRMEKFYW--APTREDRIGVCKG 309 (465)
Q Consensus 281 -------------------------------LD~ALlR~GRfd~~i~--~P~~e~R~~Il~~ 309 (465)
+.|+|+. ||+.++. .|+.+++.+|+..
T Consensus 208 gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~~pl~~~~~~~I~~~ 267 (363)
T 3hws_A 208 GFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVATLNELSEEALIQILKE 267 (363)
T ss_dssp ----------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEECCCCCHHHHHHHHHS
T ss_pred CccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeeecCCCCHHHHHHHHHH
Confidence 7888885 9999986 8999999999876
No 39
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.68 E-value=1.1e-15 Score=153.76 Aligned_cols=147 Identities=14% Similarity=0.085 Sum_probs=98.6
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHHHHhCC--ceEEecccccccCCCCC------------------------------
Q 012383 145 NIKVPLILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAGELESGNAGE------------------------------ 192 (465)
Q Consensus 145 ~~~~p~glLL~GPPGtGKT~LAraIA~elg~--~~i~vs~s~L~s~~~Ge------------------------------ 192 (465)
+..+++++|||||||||||++|+++|++++. +++.+++..+.+.+.+.
T Consensus 66 ~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld 145 (368)
T 3uk6_A 66 GKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEID 145 (368)
T ss_dssp TCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhh
Confidence 3445689999999999999999999999885 78888877655444333
Q ss_pred -------------------hHHHHHHHHHHHHHHHH-hC----CceEEEecccccccCCCCCCcccchhhHHHHHHHHHh
Q 012383 193 -------------------PAKLIRQRYREAADIIK-KG----KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 248 (465)
Q Consensus 193 -------------------~~k~Ir~~F~~A~~~i~-~~----~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~l 248 (465)
....++..|..+..... .+ .|+||||||+|.+.. .....|+.+
T Consensus 146 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l~~-------------~~~~~L~~~ 212 (368)
T 3uk6_A 146 VINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDI-------------ESFSFLNRA 212 (368)
T ss_dssp HHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGSBH-------------HHHHHHHHH
T ss_pred hhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccccCh-------------HHHHHHHHH
Confidence 24455566655533222 22 278999999997632 123345555
Q ss_pred hcCCccccCCCccccCCCCCceEEEEe-----------CCCCCCChhhhcCCCceEEEe-CCCHHHHHHHHHHhccCC--
Q 012383 249 ADNPTCVQLPGMYNKEENPRVPIIVTG-----------NDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRND-- 314 (465)
Q Consensus 249 lD~~~~v~l~g~~~~~~~~~V~VI~TT-----------N~~~~LD~ALlR~GRfd~~i~-~P~~e~R~~Il~~~l~~~-- 314 (465)
++ .....+++++|. |.+..++++|++ ||..+.. .|+.+++.+|++..+...
T Consensus 213 le-------------~~~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~~i~~~~~~~~e~~~il~~~~~~~~~ 277 (368)
T 3uk6_A 213 LE-------------SDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLLIVSTTPYSEKDTKQILRIRCEEEDV 277 (368)
T ss_dssp TT-------------CTTCCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEEEEEECCCCHHHHHHHHHHHHHHTTC
T ss_pred hh-------------CcCCCeeeeecccceeeeeccCCCCcccCCHHHHh--hccEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 55 122234333333 357889999998 7777444 899999999999887654
Q ss_pred CCChh
Q 012383 315 NVADD 319 (465)
Q Consensus 315 ~v~~~ 319 (465)
.++.+
T Consensus 278 ~~~~~ 282 (368)
T 3uk6_A 278 EMSED 282 (368)
T ss_dssp CBCHH
T ss_pred CCCHH
Confidence 34444
No 40
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.64 E-value=6e-15 Score=147.20 Aligned_cols=157 Identities=13% Similarity=0.081 Sum_probs=109.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccC
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAG 226 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~ 226 (465)
.++..+||+||||||||++|+++|++++.+|+.++++.+. ....+...+. ....+++|||||||.+..
T Consensus 53 ~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~------~~~~~~~~~~------~~~~~~vl~lDEi~~l~~ 120 (338)
T 3pfi_A 53 ECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE------KSGDLAAILT------NLSEGDILFIDEIHRLSP 120 (338)
T ss_dssp SCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC------SHHHHHHHHH------TCCTTCEEEEETGGGCCH
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc------chhHHHHHHH------hccCCCEEEEechhhcCH
Confidence 4567899999999999999999999999999999987653 2223333332 245789999999997642
Q ss_pred CCCCCcccchhhHHHHHHHHHhhcCCccccCCCc-----cccCCCCCceEEEEeCCCCCCChhhhcCCCceEEEe--CCC
Q 012383 227 RMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGM-----YNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 299 (465)
Q Consensus 227 ~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~-----~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~--~P~ 299 (465)
..+..|+..+++.....+.+. ......+++.+|++||+...++++|++ ||+..+. .|+
T Consensus 121 -------------~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~ 185 (338)
T 3pfi_A 121 -------------AIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYK 185 (338)
T ss_dssp -------------HHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCC
T ss_pred -------------HHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHh--hcCEEeeCCCcC
Confidence 223445555553221111000 000122368999999999999999998 8877777 899
Q ss_pred HHHHHHHHHHhccCCC--CChhHHHHHhcCCCc
Q 012383 300 REDRIGVCKGIFRNDN--VADDDIVKLVDTFPG 330 (465)
Q Consensus 300 ~e~R~~Il~~~l~~~~--v~~~~la~lt~gfsg 330 (465)
.+++..|++.+....+ ++.+.+..+...+.|
T Consensus 186 ~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G 218 (338)
T 3pfi_A 186 DSELALILQKAALKLNKTCEEKAALEIAKRSRS 218 (338)
T ss_dssp HHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCc
Confidence 9999999998876554 556666666664444
No 41
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.60 E-value=2.8e-15 Score=134.57 Aligned_cols=127 Identities=14% Similarity=0.158 Sum_probs=88.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHh----------CCceEEecccccc--cCCCCChHHHHHHHHHHHHHHHH-hCCc
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIK-KGKM 213 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~el----------g~~~i~vs~s~L~--s~~~Ge~~k~Ir~~F~~A~~~i~-~~~p 213 (465)
..+.++||+||||||||++|+++++++ +.+++.++...+. ..+.|.....++.++..+ . ...|
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 116 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSILKEV----QDAEGQ 116 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHHCCSHHHHHHHHHHHHHHH----HHTTTS
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcCCCchhHHHHHHHHHHHHH----HhcCCc
Confidence 346789999999999999999999997 7788888877665 234455555666666655 4 3478
Q ss_pred eEEEecccccccCCCC-CCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC-----CCChhhhc
Q 012383 214 CCLMINDLDAGAGRMG-GTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----TLYAPLIR 287 (465)
Q Consensus 214 ~ILfIDEIDai~~~r~-~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~-----~LD~ALlR 287 (465)
+||||||+|.+.+.+. ...+. .+...|..+++ ..++.+|++||.+. .++++|+|
T Consensus 117 ~vl~iDe~~~l~~~~~~~~~~~-----~~~~~l~~~~~---------------~~~~~ii~~~~~~~~~~~~~~~~~l~~ 176 (187)
T 2p65_A 117 VVMFIDEIHTVVGAGAVAEGAL-----DAGNILKPMLA---------------RGELRCIGATTVSEYRQFIEKDKALER 176 (187)
T ss_dssp EEEEETTGGGGSSSSSSCTTSC-----CTHHHHHHHHH---------------TTCSCEEEEECHHHHHHHTTTCHHHHH
T ss_pred eEEEEeCHHHhcccccccccch-----HHHHHHHHHHh---------------cCCeeEEEecCHHHHHHHHhccHHHHH
Confidence 9999999999986543 11111 12223333333 25678999999876 68999998
Q ss_pred CCCceEEEe-CCC
Q 012383 288 DGRMEKFYW-APT 299 (465)
Q Consensus 288 ~GRfd~~i~-~P~ 299 (465)
||+.+.. .|+
T Consensus 177 --R~~~i~i~~p~ 187 (187)
T 2p65_A 177 --RFQQILVEQPS 187 (187)
T ss_dssp --HEEEEECCSCC
T ss_pred --hcCcccCCCCC
Confidence 9997333 553
No 42
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.60 E-value=3.2e-15 Score=148.87 Aligned_cols=181 Identities=17% Similarity=0.190 Sum_probs=109.3
Q ss_pred ccccccccCCCCCchhHHHHHHHHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEecccccccC
Q 012383 112 TYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG 188 (465)
Q Consensus 112 ~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~s~L~s~ 188 (465)
.|+|++.+.+.. . ......++.++..++ +.+.+++||||||||||++|+++++++ +.+++.+++.++...
T Consensus 7 ~~~f~~fv~g~~--~----~~a~~~~~~~~~~~~-~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~ 79 (324)
T 1l8q_A 7 KYTLENFIVGEG--N----RLAYEVVKEALENLG-SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQA 79 (324)
T ss_dssp TCCSSSCCCCTT--T----HHHHHHHHHHHHTTT-TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHH
T ss_pred CCCcccCCCCCc--H----HHHHHHHHHHHhCcC-CCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHH
Confidence 456777653211 1 122334555555544 346789999999999999999999998 899999998876533
Q ss_pred CCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCC
Q 012383 189 NAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPR 268 (465)
Q Consensus 189 ~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~ 268 (465)
+.+.........|... ...++||||||+|.+.+.+. .++.++.+++ .. .....
T Consensus 80 ~~~~~~~~~~~~~~~~-----~~~~~vL~iDEi~~l~~~~~-----------~~~~l~~~l~--------~~---~~~~~ 132 (324)
T 1l8q_A 80 MVEHLKKGTINEFRNM-----YKSVDLLLLDDVQFLSGKER-----------TQIEFFHIFN--------TL---YLLEK 132 (324)
T ss_dssp HHHHHHHTCHHHHHHH-----HHTCSEEEEECGGGGTTCHH-----------HHHHHHHHHH--------HH---HHTTC
T ss_pred HHHHHHcCcHHHHHHH-----hcCCCEEEEcCcccccCChH-----------HHHHHHHHHH--------HH---HHCCC
Confidence 3221111111122222 23488999999998765321 1122333333 11 11123
Q ss_pred ceEEEEeCCCC---CCChhhhcCCCce--EEEe-CCCHHHHHHHHHHhccCC--CCChhHHHHHhcCC
Q 012383 269 VPIIVTGNDFS---TLYAPLIRDGRME--KFYW-APTREDRIGVCKGIFRND--NVADDDIVKLVDTF 328 (465)
Q Consensus 269 V~VI~TTN~~~---~LD~ALlR~GRfd--~~i~-~P~~e~R~~Il~~~l~~~--~v~~~~la~lt~gf 328 (465)
.+||+++|.+. .++++|++ ||+ ..+. .|+.++|.+|++.++... .++.+.+..+....
T Consensus 133 ~iii~~~~~~~~l~~l~~~L~s--R~~~~~~i~l~~~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~ 198 (324)
T 1l8q_A 133 QIILASDRHPQKLDGVSDRLVS--RFEGGILVEIELDNKTRFKIIKEKLKEFNLELRKEVIDYLLENT 198 (324)
T ss_dssp EEEEEESSCGGGCTTSCHHHHH--HHHTSEEEECCCCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC
T ss_pred eEEEEecCChHHHHHhhhHhhh--cccCceEEEeCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC
Confidence 44555555554 68999987 774 5556 448999999999887643 45666555554444
No 43
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.57 E-value=2.9e-14 Score=141.57 Aligned_cols=152 Identities=19% Similarity=0.287 Sum_probs=104.4
Q ss_pred ccccccCCCCCchhHHHHHHHHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCCh
Q 012383 114 NLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEP 193 (465)
Q Consensus 114 ~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge~ 193 (465)
+|+++.+. .......++++.. .+.|..+|++||||||||++|+++|++++.+++.++++.. +
T Consensus 24 ~~~~ivg~---------~~~~~~l~~~l~~--~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~-----~-- 85 (324)
T 3u61_B 24 TIDECILP---------AFDKETFKSITSK--GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDC-----K-- 85 (324)
T ss_dssp STTTSCCC---------HHHHHHHHHHHHT--TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTC-----C--
T ss_pred CHHHHhCc---------HHHHHHHHHHHHc--CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEccccc-----C--
Confidence 45777766 2223344444442 3556789999999999999999999999999999997652 2
Q ss_pred HHHHHHHHHHHHHHHH-hCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEE
Q 012383 194 AKLIRQRYREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPII 272 (465)
Q Consensus 194 ~k~Ir~~F~~A~~~i~-~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI 272 (465)
...++..+........ .+.+.||||||+|.+.+ ...+..|+.+++ ....++.+|
T Consensus 86 ~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~------------~~~~~~L~~~le-------------~~~~~~~iI 140 (324)
T 3u61_B 86 IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL------------AESQRHLRSFME-------------AYSSNCSII 140 (324)
T ss_dssp HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG------------HHHHHHHHHHHH-------------HHGGGCEEE
T ss_pred HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc------------HHHHHHHHHHHH-------------hCCCCcEEE
Confidence 4455555554311111 23789999999998742 112334555555 223567899
Q ss_pred EEeCCCCCCChhhhcCCCceEEEe-CCCHHHHHHHHHHh
Q 012383 273 VTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGI 310 (465)
Q Consensus 273 ~TTN~~~~LD~ALlR~GRfd~~i~-~P~~e~R~~Il~~~ 310 (465)
+|||++..++++|++ ||..+.. .|+.++|.+|++.+
T Consensus 141 ~~~n~~~~l~~~l~s--R~~~i~~~~~~~~e~~~il~~~ 177 (324)
T 3u61_B 141 ITANNIDGIIKPLQS--RCRVITFGQPTDEDKIEMMKQM 177 (324)
T ss_dssp EEESSGGGSCTTHHH--HSEEEECCCCCHHHHHHHHHHH
T ss_pred EEeCCccccCHHHHh--hCcEEEeCCCCHHHHHHHHHHH
Confidence 999999999999998 7765433 89999987765443
No 44
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.57 E-value=3.1e-14 Score=140.61 Aligned_cols=155 Identities=15% Similarity=0.127 Sum_probs=103.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccC
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAG 226 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~ 226 (465)
..+..+||+||||||||++|++++++++.+++.++++.+.. ...+...|..+ ...+++|||||+|.+..
T Consensus 36 ~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~------~~~l~~~l~~~-----~~~~~~l~lDEi~~l~~ 104 (324)
T 1hqc_A 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK------PGDLAAILANS-----LEEGDILFIDEIHRLSR 104 (324)
T ss_dssp SCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS------HHHHHHHHTTT-----CCTTCEEEETTTTSCCH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC------hHHHHHHHHHh-----ccCCCEEEEECCccccc
Confidence 34678999999999999999999999999999988876531 22222322221 35788999999987642
Q ss_pred CCCCCcccchhhHHHHHHHHHhhcCCccccCCCcccc-----CCCCCceEEEEeCCCCCCChhhhcCCCceEEEe--CCC
Q 012383 227 RMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNK-----EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 299 (465)
Q Consensus 227 ~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~-----~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~--~P~ 299 (465)
. .+..|+.++++.....+.+.... ....++.+|++||++..++++|.+ ||+..+. .|+
T Consensus 105 ~-------------~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~ 169 (324)
T 1hqc_A 105 Q-------------AEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLS--RFGIVEHLEYYT 169 (324)
T ss_dssp H-------------HHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTT--TCSCEEECCCCC
T ss_pred c-------------hHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHh--cccEEEecCCCC
Confidence 1 12334455542211111111000 012468899999999999999986 8865555 899
Q ss_pred HHHHHHHHHHhccCC--CCChhHHHHHhcC
Q 012383 300 REDRIGVCKGIFRND--NVADDDIVKLVDT 327 (465)
Q Consensus 300 ~e~R~~Il~~~l~~~--~v~~~~la~lt~g 327 (465)
.+++.++++.++... .++.+.+..+...
T Consensus 170 ~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~ 199 (324)
T 1hqc_A 170 PEELAQGVMRDARLLGVRITEEAALEIGRR 199 (324)
T ss_dssp HHHHHHHHHHHHHTTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 999999998887654 3455544444443
No 45
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.57 E-value=2.8e-14 Score=150.01 Aligned_cols=127 Identities=17% Similarity=0.216 Sum_probs=95.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCC
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMG 229 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~ 229 (465)
.++|||||||||||++|++||+.++.+|+.+++. +...+.++.+|..+........++||||||||.+.....
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~-------~~~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q 123 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYANADVERISAV-------TSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQ 123 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETT-------TCCHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-----
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEec-------cCCHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHHH
Confidence 5899999999999999999999999999998864 234567888888875554567899999999998754321
Q ss_pred CCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEe--CCCCCCChhhhcCCCceEEEe-CCCHHHHHHH
Q 012383 230 GTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYW-APTREDRIGV 306 (465)
Q Consensus 230 ~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TT--N~~~~LD~ALlR~GRfd~~i~-~P~~e~R~~I 306 (465)
..|+..++ ...+.+|++| |....++++|++ |+..+.. .|+.+++..|
T Consensus 124 -------------~~LL~~le---------------~~~v~lI~att~n~~~~l~~aL~s--R~~v~~l~~l~~edi~~i 173 (447)
T 3pvs_A 124 -------------DAFLPHIE---------------DGTITFIGATTENPSFELNSALLS--RARVYLLKSLSTEDIEQV 173 (447)
T ss_dssp --------------CCHHHHH---------------TTSCEEEEEESSCGGGSSCHHHHT--TEEEEECCCCCHHHHHHH
T ss_pred -------------HHHHHHHh---------------cCceEEEecCCCCcccccCHHHhC--ceeEEeeCCcCHHHHHHH
Confidence 12333333 1346777777 555689999998 6766555 8999999999
Q ss_pred HHHhccC
Q 012383 307 CKGIFRN 313 (465)
Q Consensus 307 l~~~l~~ 313 (465)
++.++..
T Consensus 174 l~~~l~~ 180 (447)
T 3pvs_A 174 LTQAMED 180 (447)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 9888765
No 46
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.56 E-value=2.5e-14 Score=150.93 Aligned_cols=143 Identities=18% Similarity=0.211 Sum_probs=98.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHh----------CCceEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEE
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLM 217 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~el----------g~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILf 217 (465)
.+.++||+||||||||++|+++|+.+ +.+++.++++ .+|.|+.+..++.+|..+ ....++|||
T Consensus 200 ~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~---~~~~g~~e~~~~~~~~~~----~~~~~~iLf 272 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG---TKYRGEFEDRLKKVMDEI----RQAGNIILF 272 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------CTTHHHHHHHH----HTCCCCEEE
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC---ccccchHHHHHHHHHHHH----HhcCCeEEE
Confidence 34688999999999999999999996 7788888877 778888888888999988 777899999
Q ss_pred ecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC-----CCChhhhcCCCce
Q 012383 218 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----TLYAPLIRDGRME 292 (465)
Q Consensus 218 IDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~-----~LD~ALlR~GRfd 292 (465)
|| +.. .....|... -....+.+|++||..+ .+|++|+| ||.
T Consensus 273 iD------~~~-----------~a~~~L~~~---------------L~~g~v~vI~at~~~e~~~~~~~~~al~~--Rf~ 318 (468)
T 3pxg_A 273 ID------AAI-----------DASNILKPS---------------LARGELQCIGATTLDEYRKYIEKDAALER--RFQ 318 (468)
T ss_dssp EC------C-------------------CCC---------------TTSSSCEEEEECCTTTTHHHHTTCSHHHH--SEE
T ss_pred Ee------Cch-----------hHHHHHHHh---------------hcCCCEEEEecCCHHHHHHHhhcCHHHHH--hCc
Confidence 99 110 011122111 1235789999999998 79999999 998
Q ss_pred EEEe-CCCHHHHHHHHHHhccC----CC--CChh---HHHHHhcCCCch
Q 012383 293 KFYW-APTREDRIGVCKGIFRN----DN--VADD---DIVKLVDTFPGQ 331 (465)
Q Consensus 293 ~~i~-~P~~e~R~~Il~~~l~~----~~--v~~~---~la~lt~gfsga 331 (465)
.+.. .|+.+++.+|++.+... .+ ++.+ .++.++.+|.+.
T Consensus 319 ~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~ 367 (468)
T 3pxg_A 319 PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISD 367 (468)
T ss_dssp EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCC
T ss_pred cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcc
Confidence 7444 99999999999988755 22 3333 455666666543
No 47
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.55 E-value=1e-13 Score=136.05 Aligned_cols=158 Identities=13% Similarity=0.128 Sum_probs=103.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEecccccccC------------CCCChHHHHHHHHHHHHHHHHhCC
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG------------NAGEPAKLIRQRYREAADIIKKGK 212 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~s~L~s~------------~~Ge~~k~Ir~~F~~A~~~i~~~~ 212 (465)
++..+||+||||||||++|+++|+.+ +.+++.++++.+... +.|.... ..+..+ +....
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~---~~~~~~---~~~~~ 119 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEG---GQLTEA---VRRRP 119 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHHHHHCCCTTSTTTTTC---CHHHHH---HHHCS
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHHHhcCCCCcccccccc---chHHHH---HHhCC
Confidence 34579999999999999999999997 456888887765432 1121110 112222 23455
Q ss_pred ceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCC---------------
Q 012383 213 MCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND--------------- 277 (465)
Q Consensus 213 p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~--------------- 277 (465)
.+||||||+|.+.. .+...|+.++++..... .........++++|+|||.
T Consensus 120 ~~vl~lDEi~~l~~-------------~~~~~Ll~~le~~~~~~--~~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~ 184 (311)
T 4fcw_A 120 YSVILFDAIEKAHP-------------DVFNILLQMLDDGRLTD--SHGRTVDFRNTVIIMTSNLGSPLILEGLQKGWPY 184 (311)
T ss_dssp SEEEEEETGGGSCH-------------HHHHHHHHHHHHSEEEC--TTSCEEECTTEEEEEEESTTHHHHHTTTTSCCCS
T ss_pred CeEEEEeChhhcCH-------------HHHHHHHHHHhcCEEEc--CCCCEEECCCcEEEEecccCHHHHHhhhcccccH
Confidence 69999999987632 23455666766332211 1101122357789999999
Q ss_pred -----------CCCCChhhhcCCCceEEEe--CCCHHHHHHHHHHhccC-----------CCCChhHHHHHhc-CC
Q 012383 278 -----------FSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRN-----------DNVADDDIVKLVD-TF 328 (465)
Q Consensus 278 -----------~~~LD~ALlR~GRfd~~i~--~P~~e~R~~Il~~~l~~-----------~~v~~~~la~lt~-gf 328 (465)
...++++|++ ||+..+. +|+.+++..|++.++.. ..++.+.+..+.. .|
T Consensus 185 ~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 258 (311)
T 4fcw_A 185 ERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKRISLELTEAAKDFLAERGY 258 (311)
T ss_dssp STHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTTCEEEECHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEEeCHHHHHHHHHhCC
Confidence 5578899985 9987777 88999999998887643 1345555555554 44
No 48
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.54 E-value=2.5e-14 Score=145.62 Aligned_cols=139 Identities=17% Similarity=0.285 Sum_probs=81.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccc-cCCCCCh-HHHHHHHHHHHHHHHHhCCceEEEecccccc
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE-SGNAGEP-AKLIRQRYREAADIIKKGKMCCLMINDLDAG 224 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~-s~~~Ge~-~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai 224 (465)
.++.++|||||||||||++|+++|+.++.+++.++++.+. .+|.|+. ...+...|..+...+....++||||||+|.+
T Consensus 70 ~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l 149 (376)
T 1um8_A 70 LSKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKI 149 (376)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC
T ss_pred cCCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHH
Confidence 4567899999999999999999999999999999988875 5677764 4455666654422223457899999999999
Q ss_pred cCCCCCCc-ccchhhHHHHHHHHHhhcCCccccCC--Cc-------cccCCCCCceEEEEeCCCCCCChhhhc
Q 012383 225 AGRMGGTT-QYTVNNQMVNATLMNIADNPTCVQLP--GM-------YNKEENPRVPIIVTGNDFSTLYAPLIR 287 (465)
Q Consensus 225 ~~~r~~~~-~~~v~~~~v~~~Ll~llD~~~~v~l~--g~-------~~~~~~~~V~VI~TTN~~~~LD~ALlR 287 (465)
...+.+.. ........++..|+.+++.... .++ +. .......++.+|+||| .+.|++++.|
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~-~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~-~~~l~~~l~~ 220 (376)
T 1um8_A 150 SRLSENRSITRDVSGEGVQQALLKIVEGSLV-NIPPKGGRKHPEGNFIQIDTSDILFICAGA-FDGLAEIIKK 220 (376)
T ss_dssp --------------CHHHHHHHHHHHHCCEE-C---------------CEECTTCEEEEEEC-CTTHHHHTTT
T ss_pred hhhcCCCceecccchHHHHHHHHHHhhccce-ecccccccccCCcceEEEecCCeEEEecCC-HHHHHHHHHH
Confidence 87754211 1122223467778888884311 110 00 0001236678899988 4445555444
No 49
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.54 E-value=8.9e-14 Score=154.13 Aligned_cols=140 Identities=14% Similarity=0.153 Sum_probs=105.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHh----------CCceEEecccccc--cCCCCChHHHHHHHHHHHHHHHHhCCceE
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKKGKMCC 215 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~el----------g~~~i~vs~s~L~--s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~I 215 (465)
.+.++||+||||||||++|+++|+.+ +..++.++.+.+. .++.|+.+..++.+|..+ ....++|
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~----~~~~~~i 281 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQL----EQDTNSI 281 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHH----SSSSCEE
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchHHHHHHHHHHHH----HhcCCeE
Confidence 56789999999999999999999987 6677888877776 468899999999999887 6667899
Q ss_pred EEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC-----CCCChhhhcCCC
Q 012383 216 LMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF-----STLYAPLIRDGR 290 (465)
Q Consensus 216 LfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~-----~~LD~ALlR~GR 290 (465)
|||||+|.+.+....... .......|..+ ....++.+|++||.+ -.+|++|.| |
T Consensus 282 L~IDEi~~l~~~~~~~~~----~~~~~~~L~~~---------------l~~~~~~~I~at~~~~~~~~~~~d~aL~~--R 340 (758)
T 1r6b_X 282 LFIDEIHTIIGAGAASGG----QVDAANLIKPL---------------LSSGKIRVIGSTTYQEFSNIFEKDRALAR--R 340 (758)
T ss_dssp EEETTTTTTTTSCCSSSC----HHHHHHHHSSC---------------SSSCCCEEEEEECHHHHHCCCCCTTSSGG--G
T ss_pred EEEechHHHhhcCCCCcc----hHHHHHHHHHH---------------HhCCCeEEEEEeCchHHhhhhhcCHHHHh--C
Confidence 999999999876542111 12222233111 223578899999964 368899998 8
Q ss_pred ceEEEe-CCCHHHHHHHHHHhcc
Q 012383 291 MEKFYW-APTREDRIGVCKGIFR 312 (465)
Q Consensus 291 fd~~i~-~P~~e~R~~Il~~~l~ 312 (465)
|+.+.. .|+.++|.+|++.+..
T Consensus 341 f~~i~v~~p~~~e~~~il~~l~~ 363 (758)
T 1r6b_X 341 FQKIDITEPSIEETVQIINGLKP 363 (758)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHH
T ss_pred ceEEEcCCCCHHHHHHHHHHHHH
Confidence 986444 9999999999887663
No 50
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.54 E-value=1.6e-14 Score=151.28 Aligned_cols=183 Identities=15% Similarity=0.267 Sum_probs=109.1
Q ss_pred cccccccccCCCCCchhHHHHHHHHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHh-----CCceEEeccccc
Q 012383 111 RTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGEL 185 (465)
Q Consensus 111 r~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~el-----g~~~i~vs~s~L 185 (465)
..|+|++.+.+. ... .....++.+...++. +..++||||||||||+||++|++++ +.+++.+++..+
T Consensus 100 ~~~tfd~fv~g~--~n~----~a~~~~~~~a~~~~~--~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~ 171 (440)
T 2z4s_A 100 PDYTFENFVVGP--GNS----FAYHAALEVAKHPGR--YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF 171 (440)
T ss_dssp TTCSGGGCCCCT--TTH----HHHHHHHHHHHSTTS--SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHH
T ss_pred CCCChhhcCCCC--chH----HHHHHHHHHHhCCCC--CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH
Confidence 346777766321 111 233444555555543 6789999999999999999999998 888999998776
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCC
Q 012383 186 ESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE 265 (465)
Q Consensus 186 ~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~ 265 (465)
...+.+.-.......|... ....++||||||+|.+.+... .+..|+.+++ .. .
T Consensus 172 ~~~~~~~~~~~~~~~~~~~----~~~~~~vL~IDEi~~l~~~~~-----------~q~~l~~~l~--------~l---~- 224 (440)
T 2z4s_A 172 LNDLVDSMKEGKLNEFREK----YRKKVDILLIDDVQFLIGKTG-----------VQTELFHTFN--------EL---H- 224 (440)
T ss_dssp HHHHHHHHHTTCHHHHHHH----HTTTCSEEEEECGGGGSSCHH-----------HHHHHHHHHH--------HH---H-
T ss_pred HHHHHHHHHcccHHHHHHH----hcCCCCEEEEeCcccccCChH-----------HHHHHHHHHH--------HH---H-
Confidence 4322111000000112221 122789999999998875421 1122333333 11 0
Q ss_pred CCCceEEEEeCC-CCC---CChhhhcCCCce--EEEe--CCCHHHHHHHHHHhccCC--CCChhHHHHHhcCCCc
Q 012383 266 NPRVPIIVTGND-FST---LYAPLIRDGRME--KFYW--APTREDRIGVCKGIFRND--NVADDDIVKLVDTFPG 330 (465)
Q Consensus 266 ~~~V~VI~TTN~-~~~---LD~ALlR~GRfd--~~i~--~P~~e~R~~Il~~~l~~~--~v~~~~la~lt~gfsg 330 (465)
..+..||+||++ +.. ++++|++ ||. ..+. .|+.++|.+|++..+... .++.+.+..++....|
T Consensus 225 ~~~~~iIitt~~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~g 297 (440)
T 2z4s_A 225 DSGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDD 297 (440)
T ss_dssp TTTCEEEEEESSCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCS
T ss_pred HCCCeEEEEECCCHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC
Confidence 123356666665 443 8899987 664 4444 999999999998887533 3555544444444433
No 51
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.53 E-value=3.1e-14 Score=160.35 Aligned_cols=156 Identities=18% Similarity=0.199 Sum_probs=100.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHh----------CCceEEecccccc--cCCCCChHHHHHHHHHHHHHHHHh-CCce
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKK-GKMC 214 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~el----------g~~~i~vs~s~L~--s~~~Ge~~k~Ir~~F~~A~~~i~~-~~p~ 214 (465)
.+.++||+||||||||++|+++|+.+ +.+++.++.+.+. .++.|+.+..++.+|..+ .. ..|+
T Consensus 190 ~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~----~~~~~~~ 265 (854)
T 1qvr_A 190 TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEV----VQSQGEV 265 (854)
T ss_dssp SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHHHHHHHHHHHH----HTTCSSE
T ss_pred CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccchHHHHHHHHHHHHH----HhcCCCe
Confidence 34678999999999999999999997 8899999998887 568899999999999887 54 4789
Q ss_pred EEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC----CCChhhhcCCC
Q 012383 215 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS----TLYAPLIRDGR 290 (465)
Q Consensus 215 ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~----~LD~ALlR~GR 290 (465)
||||||+|.+.+....... ..+...|..++. ..++.+|++||.++ .+|++|+| |
T Consensus 266 iL~IDEi~~l~~~~~~~g~-----~~~~~~L~~~l~---------------~~~i~~I~at~~~~~~~~~~d~aL~r--R 323 (854)
T 1qvr_A 266 ILFIDELHTVVGAGKAEGA-----VDAGNMLKPALA---------------RGELRLIGATTLDEYREIEKDPALER--R 323 (854)
T ss_dssp EEEECCC------------------------HHHHH---------------TTCCCEEEEECHHHHHHHTTCTTTCS--C
T ss_pred EEEEecHHHHhccCCccch-----HHHHHHHHHHHh---------------CCCeEEEEecCchHHhhhccCHHHHh--C
Confidence 9999999999866531111 112223333333 24678999999875 58999999 8
Q ss_pred ceEEEe-CCCHHHHHHHHHHhcc------CCCCChh---HHHHHhcCCC
Q 012383 291 MEKFYW-APTREDRIGVCKGIFR------NDNVADD---DIVKLVDTFP 329 (465)
Q Consensus 291 fd~~i~-~P~~e~R~~Il~~~l~------~~~v~~~---~la~lt~gfs 329 (465)
|+.+.. .|+.+++.+|++.++. ...++.+ .++.++.+|.
T Consensus 324 f~~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i 372 (854)
T 1qvr_A 324 FQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYI 372 (854)
T ss_dssp CCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHC
T ss_pred CceEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhc
Confidence 887444 9999999999986654 2233433 4555555543
No 52
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.52 E-value=3e-13 Score=123.87 Aligned_cols=142 Identities=19% Similarity=0.236 Sum_probs=93.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh-----CCceEEecccccccCCCCChHHHHHHHHHHHHHH--HHhCCceEEEeccccc
Q 012383 151 ILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELESGNAGEPAKLIRQRYREAADI--IKKGKMCCLMINDLDA 223 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~el-----g~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~--i~~~~p~ILfIDEIDa 223 (465)
.++|+||||||||++++++++++ ...++.++.+... ....++..+...... .....++||||||+|.
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~ 113 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDER------GIDVVRHKIKEFARTAPIGGAPFKIIFLDEADA 113 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTT------CHHHHHHHHHHHHTSCCSTTCSCEEEEEETGGG
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhccccccceEEecccccc------ChHHHHHHHHHHhcccCCCccCceEEEEeChhh
Confidence 49999999999999999999986 3456666654322 122233333322100 0136789999999997
Q ss_pred ccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhhcCCCceEEEe-CCCHHH
Q 012383 224 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTRED 302 (465)
Q Consensus 224 i~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~-~P~~e~ 302 (465)
+... ....|+.+++ ....++.+|+|||.+..+++++.+ |+..+.. .|+.++
T Consensus 114 l~~~-------------~~~~l~~~l~-------------~~~~~~~~i~~~~~~~~~~~~l~~--r~~~i~~~~~~~~~ 165 (226)
T 2chg_A 114 LTAD-------------AQAALRRTME-------------MYSKSCRFILSCNYVSRIIEPIQS--RCAVFRFKPVPKEA 165 (226)
T ss_dssp SCHH-------------HHHHHHHHHH-------------HTTTTEEEEEEESCGGGSCHHHHT--TSEEEECCCCCHHH
T ss_pred cCHH-------------HHHHHHHHHH-------------hcCCCCeEEEEeCChhhcCHHHHH--hCceeecCCCCHHH
Confidence 6421 1233445555 223567899999999999999987 6774333 889999
Q ss_pred HHHHHHHhccCC--CCChhHHHHHhc
Q 012383 303 RIGVCKGIFRND--NVADDDIVKLVD 326 (465)
Q Consensus 303 R~~Il~~~l~~~--~v~~~~la~lt~ 326 (465)
..+++..++... .++.+.+..+..
T Consensus 166 ~~~~l~~~~~~~~~~~~~~~~~~l~~ 191 (226)
T 2chg_A 166 MKKRLLEICEKEGVKITEDGLEALIY 191 (226)
T ss_dssp HHHHHHHHHHHHTCCBCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 999998877533 355554444443
No 53
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.51 E-value=9.2e-14 Score=154.32 Aligned_cols=126 Identities=15% Similarity=0.147 Sum_probs=90.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHh----------CCceEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEE
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCL 216 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~el----------g~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~IL 216 (465)
+.+.++|||||||||||++|+++|+.+ +.+++.++. ..+|.|+.+..++.+|..+ ....|+||
T Consensus 199 ~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~---g~~~~G~~e~~l~~~~~~~----~~~~~~iL 271 (758)
T 3pxi_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM---GTKYRGEFEDRLKKVMDEI----RQAGNIIL 271 (758)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------CTTHHHHHHHH----HTCCCCEE
T ss_pred CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---cccccchHHHHHHHHHHHH----HhcCCEEE
Confidence 345689999999999999999999997 778887777 5668899888999999998 77889999
Q ss_pred EecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC-----CCChhhhcCCCc
Q 012383 217 MINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----TLYAPLIRDGRM 291 (465)
Q Consensus 217 fIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~-----~LD~ALlR~GRf 291 (465)
||| +.. -....|.. . -....+.+|+|||..+ .+|++|+| ||
T Consensus 272 fiD------~~~-----------~~~~~L~~------------~---l~~~~v~~I~at~~~~~~~~~~~d~al~r--Rf 317 (758)
T 3pxi_A 272 FID------AAI-----------DASNILKP------------S---LARGELQCIGATTLDEYRKYIEKDAALER--RF 317 (758)
T ss_dssp EEC------C-------------------CC------------C---TTSSSCEEEEECCTTTTHHHHTTCSHHHH--SE
T ss_pred EEc------Cch-----------hHHHHHHH------------H---HhcCCEEEEeCCChHHHHHHhhccHHHHh--hC
Confidence 999 110 01111211 1 2245789999999998 79999999 99
Q ss_pred eEEEe-CCCHHHHHHHHHHhccC
Q 012383 292 EKFYW-APTREDRIGVCKGIFRN 313 (465)
Q Consensus 292 d~~i~-~P~~e~R~~Il~~~l~~ 313 (465)
..+.. .|+.+++.+|++.+...
T Consensus 318 ~~i~v~~p~~~~~~~il~~~~~~ 340 (758)
T 3pxi_A 318 QPIQVDQPSVDESIQILQGLRDR 340 (758)
T ss_dssp EEEECCCCCHHHHHHHHHHTTTT
T ss_pred cEEEeCCCCHHHHHHHHHHHHHH
Confidence 66333 99999999999977654
No 54
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.47 E-value=5.6e-13 Score=148.05 Aligned_cols=137 Identities=11% Similarity=0.153 Sum_probs=97.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh---CCceEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCC
Q 012383 151 ILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGR 227 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~ 227 (465)
.+||+||||||||++|+++|+.+ +.+++.++++++.+.+..... .++... +...++||||||||.+.
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~~~----~l~~~~----~~~~~~vl~lDEi~~~~-- 592 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSGG----QLTEKV----RRKPYSVVLLDAIEKAH-- 592 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC-------CHHHH----HHCSSSEEEEECGGGSC--
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccccc----hhhHHH----HhCCCeEEEEeCccccC--
Confidence 69999999999999999999997 678999999999888776521 122222 45677899999998652
Q ss_pred CCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCC------------CChhhhcCCCceEEE
Q 012383 228 MGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFST------------LYAPLIRDGRMEKFY 295 (465)
Q Consensus 228 r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~------------LD~ALlR~GRfd~~i 295 (465)
..+...|++++++.......| ......++.||+|||.+.. +.|+|+. |||..+
T Consensus 593 -----------~~~~~~Ll~~le~g~~~~~~g--~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i 657 (758)
T 3pxi_A 593 -----------PDVFNILLQVLEDGRLTDSKG--RTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFIN--RIDEII 657 (758)
T ss_dssp -----------HHHHHHHHHHHHHSBCC-------CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHT--TSSEEE
T ss_pred -----------HHHHHHHHHHhccCeEEcCCC--CEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHh--hCCeEE
Confidence 334566777777422111111 1233467899999997665 7888885 998777
Q ss_pred e--CCCHHHHHHHHHHhcc
Q 012383 296 W--APTREDRIGVCKGIFR 312 (465)
Q Consensus 296 ~--~P~~e~R~~Il~~~l~ 312 (465)
. .|+.+++.+|++.++.
T Consensus 658 ~~~~l~~~~~~~i~~~~l~ 676 (758)
T 3pxi_A 658 VFHSLEKKHLTEIVSLMSD 676 (758)
T ss_dssp ECC--CHHHHHHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHHHHH
Confidence 7 8899999999877663
No 55
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.47 E-value=6.4e-14 Score=149.30 Aligned_cols=154 Identities=16% Similarity=0.231 Sum_probs=94.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCChH-------HHHHHHHHHHHHHH-HhCCceEEEe
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPA-------KLIRQRYREAADII-KKGKMCCLMI 218 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge~~-------k~Ir~~F~~A~~~i-~~~~p~ILfI 218 (465)
.+++++||+||||||||++|+++|++++.+++.++++.+.+.+..+.. ..++..|..+.+.. ....++||||
T Consensus 75 ~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliI 154 (516)
T 1sxj_A 75 GVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIM 154 (516)
T ss_dssp TSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEE
Confidence 367899999999999999999999999999999998876533211000 00111222210000 1367899999
Q ss_pred cccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC--CCChhhhcCCCceEEEe
Q 012383 219 NDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS--TLYAPLIRDGRMEKFYW 296 (465)
Q Consensus 219 DEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~--~LD~ALlR~GRfd~~i~ 296 (465)
||+|.+..... .. ...|+++++ ..+++||++||... .+ +++.| |+..+..
T Consensus 155 DEid~l~~~~~---------~~-l~~L~~~l~---------------~~~~~iIli~~~~~~~~l-~~l~~--r~~~i~f 206 (516)
T 1sxj_A 155 DEVDGMSGGDR---------GG-VGQLAQFCR---------------KTSTPLILICNERNLPKM-RPFDR--VCLDIQF 206 (516)
T ss_dssp CSGGGCCTTST---------TH-HHHHHHHHH---------------HCSSCEEEEESCTTSSTT-GGGTT--TSEEEEC
T ss_pred ECCCccchhhH---------HH-HHHHHHHHH---------------hcCCCEEEEEcCCCCccc-hhhHh--ceEEEEe
Confidence 99999876421 01 123444444 13456777777654 33 34554 3333323
Q ss_pred -CCCHHHHHHHHHHhccCC--CCChhHHHHHhcCC
Q 012383 297 -APTREDRIGVCKGIFRND--NVADDDIVKLVDTF 328 (465)
Q Consensus 297 -~P~~e~R~~Il~~~l~~~--~v~~~~la~lt~gf 328 (465)
.|+.+++.+++..++... .++.+.+..++...
T Consensus 207 ~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s 241 (516)
T 1sxj_A 207 RRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTT 241 (516)
T ss_dssp CCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 999999999988776543 45555555555443
No 56
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.47 E-value=2.6e-13 Score=150.42 Aligned_cols=144 Identities=17% Similarity=0.200 Sum_probs=100.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccC-----CCCChHHHH-----HHHHHHHHHHHHhCCceEEE
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG-----NAGEPAKLI-----RQRYREAADIIKKGKMCCLM 217 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~-----~~Ge~~k~I-----r~~F~~A~~~i~~~~p~ILf 217 (465)
+...+||+||||||||++|+++|+.++.+++.++++++... .+|.+...+ ..+... ++...++|||
T Consensus 487 p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~----~~~~~~~vl~ 562 (758)
T 1r6b_X 487 PVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDA----VIKHPHAVLL 562 (758)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHH----HHHCSSEEEE
T ss_pred CceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcCCCCCCcCccccchHHHH----HHhCCCcEEE
Confidence 33479999999999999999999999999999999887543 333321111 112222 2455689999
Q ss_pred ecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC------------------
Q 012383 218 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS------------------ 279 (465)
Q Consensus 218 IDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~------------------ 279 (465)
|||||++. ..+...|++++++.....-.| ......++.||+|||...
T Consensus 563 lDEi~~~~-------------~~~~~~Ll~~le~~~~~~~~g--~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~ 627 (758)
T 1r6b_X 563 LDEIEKAH-------------PDVFNILLQVMDNGTLTDNNG--RKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTD 627 (758)
T ss_dssp EETGGGSC-------------HHHHHHHHHHHHHSEEEETTT--EEEECTTEEEEEEECSSCC-----------------
T ss_pred EeCccccC-------------HHHHHHHHHHhcCcEEEcCCC--CEEecCCeEEEEecCcchhhhhhcccCccccchHHH
Confidence 99998742 224556777777322111011 112236788999999854
Q ss_pred -------CCChhhhcCCCceEEEe--CCCHHHHHHHHHHhcc
Q 012383 280 -------TLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFR 312 (465)
Q Consensus 280 -------~LD~ALlR~GRfd~~i~--~P~~e~R~~Il~~~l~ 312 (465)
.++|+|+. |||..+. .|+.+++..|++.++.
T Consensus 628 ~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~ 667 (758)
T 1r6b_X 628 AMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIV 667 (758)
T ss_dssp CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHH
Confidence 67888886 9988777 8899999999888774
No 57
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.47 E-value=4.4e-13 Score=135.00 Aligned_cols=152 Identities=14% Similarity=0.226 Sum_probs=99.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHh-----------CCceEEecccccc-c-----------------CCCCCh-HHH
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKM-----------GINPIMMSAGELE-S-----------------GNAGEP-AKL 196 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~el-----------g~~~i~vs~s~L~-s-----------------~~~Ge~-~k~ 196 (465)
..|..++||||||||||++|+++++++ +..++.+++.... + ...|.+ ...
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 122 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEY 122 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHH
Confidence 456799999999999999999999997 8899998866532 1 011221 222
Q ss_pred HHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeC
Q 012383 197 IRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGN 276 (465)
Q Consensus 197 Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN 276 (465)
+..++... ....+ ||||||+|.+..... + .. ++..+++ . . .++.||+|||
T Consensus 123 ~~~l~~~l----~~~~~-vlilDEi~~l~~~~~---~-----~~---~l~~l~~---------~----~-~~~~iI~~t~ 172 (384)
T 2qby_B 123 IDKIKNGT----RNIRA-IIYLDEVDTLVKRRG---G-----DI---VLYQLLR---------S----D-ANISVIMISN 172 (384)
T ss_dssp HHHHHHHH----SSSCE-EEEEETTHHHHHSTT---S-----HH---HHHHHHT---------S----S-SCEEEEEECS
T ss_pred HHHHHHHh----ccCCC-EEEEECHHHhccCCC---C-----ce---eHHHHhc---------C----C-cceEEEEEEC
Confidence 33333322 44444 999999998865421 1 11 1333333 1 1 6789999999
Q ss_pred CC---CCCChhhhcCCCceEEEe--CCCHHHHHHHHHHhccC----CCCChh---HHHHHhcCCCc
Q 012383 277 DF---STLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRN----DNVADD---DIVKLVDTFPG 330 (465)
Q Consensus 277 ~~---~~LD~ALlR~GRfd~~i~--~P~~e~R~~Il~~~l~~----~~v~~~---~la~lt~gfsg 330 (465)
.+ +.+++++++ ||...+. .|+.++..+|++.++.. ..++.+ .+++.+...+|
T Consensus 173 ~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G 236 (384)
T 2qby_B 173 DINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHG 236 (384)
T ss_dssp STTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCC
T ss_pred CCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccC
Confidence 98 688999887 5544555 88999999999887642 345544 45555554444
No 58
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.46 E-value=3.4e-13 Score=136.15 Aligned_cols=137 Identities=11% Similarity=0.051 Sum_probs=94.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHh----------CCceEEecccccccC----------C------CCChHHHHHHH
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELESG----------N------AGEPAKLIRQR 200 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~el----------g~~~i~vs~s~L~s~----------~------~Ge~~k~Ir~~ 200 (465)
..|.+++||||||||||+++++|++++ .+.++.+++..+.+. . .|+....++..
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~ 122 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFY 122 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Confidence 467899999999999999999999998 356788887654332 1 24456677777
Q ss_pred HHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCC
Q 012383 201 YREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFST 280 (465)
Q Consensus 201 F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~ 280 (465)
|.... -....++||||||+|.+. . + ..|+++++ |......++.||+++|..+.
T Consensus 123 f~~~~--~~~~~~~ii~lDE~d~l~---~---q---------~~L~~l~~----------~~~~~~s~~~vI~i~n~~d~ 175 (318)
T 3te6_A 123 ITNVP--KAKKRKTLILIQNPENLL---S---E---------KILQYFEK----------WISSKNSKLSIICVGGHNVT 175 (318)
T ss_dssp HHHSC--GGGSCEEEEEEECCSSSC---C---T---------HHHHHHHH----------HHHCSSCCEEEEEECCSSCC
T ss_pred HHHhh--hccCCceEEEEecHHHhh---c---c---------hHHHHHHh----------cccccCCcEEEEEEecCccc
Confidence 77520 025678999999999987 1 1 22333333 11134578899999999876
Q ss_pred CChh----hhcCCCce-EEEe--CCCHHHHHHHHHHhcc
Q 012383 281 LYAP----LIRDGRME-KFYW--APTREDRIGVCKGIFR 312 (465)
Q Consensus 281 LD~A----LlR~GRfd-~~i~--~P~~e~R~~Il~~~l~ 312 (465)
.+.. +.. ||. ..+. .++.++..+|++.-+.
T Consensus 176 ~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 176 IREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp CHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred chhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHH
Confidence 4433 333 564 2333 8999999999776654
No 59
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.43 E-value=1.1e-12 Score=121.03 Aligned_cols=147 Identities=14% Similarity=0.138 Sum_probs=89.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecc----------------cccccCCC--CChHHHHHHHHHHHHHHHH
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA----------------GELESGNA--GEPAKLIRQRYREAADIIK 209 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~----------------s~L~s~~~--Ge~~k~Ir~~F~~A~~~i~ 209 (465)
.|..++|+||||||||+++++++++++........ ..+..... ......++.++........
T Consensus 44 ~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (250)
T 1njg_A 44 IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPA 123 (250)
T ss_dssp CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEecCcccccHHHHHHHHHHhhhchh
Confidence 45689999999999999999999987542211000 00000000 1122334444443300001
Q ss_pred hCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhhcCC
Q 012383 210 KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDG 289 (465)
Q Consensus 210 ~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~G 289 (465)
...+.+|||||+|.+.. .....|+.+++ ....++.+|++||++..+++++++
T Consensus 124 ~~~~~vlviDe~~~l~~-------------~~~~~l~~~l~-------------~~~~~~~~i~~t~~~~~~~~~l~~-- 175 (250)
T 1njg_A 124 RGRFKVYLIDEVHMLSR-------------HSFNALLKTLE-------------EPPEHVKFLLATTDPQKLPVTILS-- 175 (250)
T ss_dssp SSSSEEEEEETGGGSCH-------------HHHHHHHHHHH-------------SCCTTEEEEEEESCGGGSCHHHHT--
T ss_pred cCCceEEEEECcccccH-------------HHHHHHHHHHh-------------cCCCceEEEEEeCChHhCCHHHHH--
Confidence 34689999999987521 11233445555 224568899999999999999987
Q ss_pred CceEEEe-CCCHHHHHHHHHHhccCC--CCChhHHH
Q 012383 290 RMEKFYW-APTREDRIGVCKGIFRND--NVADDDIV 322 (465)
Q Consensus 290 Rfd~~i~-~P~~e~R~~Il~~~l~~~--~v~~~~la 322 (465)
|+..+.. .|+.++..++++.++... .++.+.+.
T Consensus 176 r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~ 211 (250)
T 1njg_A 176 RCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQ 211 (250)
T ss_dssp TSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHH
T ss_pred HhhhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 5543333 889999999998887644 34444333
No 60
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.42 E-value=1.1e-12 Score=131.31 Aligned_cols=154 Identities=15% Similarity=0.145 Sum_probs=97.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHh---------CCceEEecccccccC----------------CCCChHHH-HHHH
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKM---------GINPIMMSAGELESG----------------NAGEPAKL-IRQR 200 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~el---------g~~~i~vs~s~L~s~----------------~~Ge~~k~-Ir~~ 200 (465)
..+..++||||||||||++++++++++ +..++.+++....+. ..|.+... +..+
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l 121 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERL 121 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHH
Confidence 457799999999999999999999998 788888887643211 12322222 2333
Q ss_pred HHHHHHHHH-hCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCC-CCCceEEEEeCCC
Q 012383 201 YREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEE-NPRVPIIVTGNDF 278 (465)
Q Consensus 201 F~~A~~~i~-~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~-~~~V~VI~TTN~~ 278 (465)
+.. +. ...|+||||||+|.+...+. .+..|..+++ .+.. .. ..++.+|++||++
T Consensus 122 ~~~----l~~~~~~~vlilDEi~~l~~~~~-----------~~~~l~~l~~-----~~~~----~~~~~~~~~I~~t~~~ 177 (387)
T 2v1u_A 122 VKR----LSRLRGIYIIVLDEIDFLPKRPG-----------GQDLLYRITR-----INQE----LGDRVWVSLVGITNSL 177 (387)
T ss_dssp HHH----HTTSCSEEEEEEETTTHHHHSTT-----------HHHHHHHHHH-----GGGC----C-----CEEEEECSCS
T ss_pred HHH----HhccCCeEEEEEccHhhhcccCC-----------CChHHHhHhh-----chhh----cCCCceEEEEEEECCC
Confidence 322 23 45699999999998754420 1123333333 0001 11 4678999999998
Q ss_pred ---CCCChhhhcCCCceE-EEe--CCCHHHHHHHHHHhccC----CCCChh---HHHHHhc
Q 012383 279 ---STLYAPLIRDGRMEK-FYW--APTREDRIGVCKGIFRN----DNVADD---DIVKLVD 326 (465)
Q Consensus 279 ---~~LD~ALlR~GRfd~-~i~--~P~~e~R~~Il~~~l~~----~~v~~~---~la~lt~ 326 (465)
+.+++++.+ ||.. .+. .|+.+++.+|++..+.. ..++.+ .+++.+.
T Consensus 178 ~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~ 236 (387)
T 2v1u_A 178 GFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAA 236 (387)
T ss_dssp TTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHH
T ss_pred chHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHH
Confidence 788999987 6643 344 88999999998877642 334433 4455555
No 61
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.42 E-value=2.8e-12 Score=125.40 Aligned_cols=159 Identities=18% Similarity=0.243 Sum_probs=102.4
Q ss_pred HHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHh-----CCceEEecccccccCCCCChHHHHHHHHHHHHHHHH
Q 012383 135 HITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK 209 (465)
Q Consensus 135 ~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~el-----g~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~ 209 (465)
...++++... +.|. +|||||||||||++|+++++++ +.+++.++++.... .. .++..+........
T Consensus 27 ~~l~~~l~~~--~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~~~~~~ 97 (319)
T 2chq_A 27 QRLKGYVERK--NIPH-LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERG--ID----VVRHKIKEFARTAP 97 (319)
T ss_dssp HHHHTTTTTT--CCCC-EEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTC--TT----TSSHHHHHHHHSCC
T ss_pred HHHHHHHhCC--CCCe-EEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccC--hH----HHHHHHHHHHhcCC
Confidence 3444444432 2333 9999999999999999999996 34577777665321 11 12222222210001
Q ss_pred --hCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhhc
Q 012383 210 --KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIR 287 (465)
Q Consensus 210 --~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR 287 (465)
...+.||||||+|.+... ....|+.+++ ....++.+|++||.+..+++++.+
T Consensus 98 ~~~~~~~vliiDe~~~l~~~-------------~~~~L~~~le-------------~~~~~~~~i~~~~~~~~l~~~l~s 151 (319)
T 2chq_A 98 IGGAPFKIIFLDEADALTAD-------------AQAALRRTME-------------MYSKSCRFILSCNYVSRIIEPIQS 151 (319)
T ss_dssp SSSCCCEEEEEETGGGSCHH-------------HHHTTGGGTS-------------SSSSSEEEEEEESCGGGSCHHHHT
T ss_pred CCCCCceEEEEeCCCcCCHH-------------HHHHHHHHHH-------------hcCCCCeEEEEeCChhhcchHHHh
Confidence 256899999999976321 1223333444 234578899999999999999987
Q ss_pred CCCceEEEe-CCCHHHHHHHHHHhccCCC--CChhHHHHHhcCCCc
Q 012383 288 DGRMEKFYW-APTREDRIGVCKGIFRNDN--VADDDIVKLVDTFPG 330 (465)
Q Consensus 288 ~GRfd~~i~-~P~~e~R~~Il~~~l~~~~--v~~~~la~lt~gfsg 330 (465)
|+..+.. .|+.+++.+++..++...+ ++.+.+..+.....|
T Consensus 152 --r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G 195 (319)
T 2chq_A 152 --RCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG 195 (319)
T ss_dssp --TCEEEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTT
T ss_pred --hCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 5654433 8899999999998887654 456666666644433
No 62
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.40 E-value=2.9e-12 Score=125.52 Aligned_cols=147 Identities=14% Similarity=0.176 Sum_probs=96.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHh-----CCceEEecccccccCCCCChHHHHHHHHHHHHHHHH---hCCceEEEec
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK---KGKMCCLMIN 219 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~el-----g~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~---~~~p~ILfID 219 (465)
.|. +|||||||||||++|+++++++ +..++.+++++.. ....++..+........ .+.+.|||||
T Consensus 42 ~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~~~~~~~~~~viiiD 114 (323)
T 1sxj_B 42 MPH-MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDR------GIDVVRNQIKHFAQKKLHLPPGKHKIVILD 114 (323)
T ss_dssp CCC-EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCC------SHHHHHTHHHHHHHBCCCCCTTCCEEEEEE
T ss_pred CCe-EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCcccc------ChHHHHHHHHHHHhccccCCCCCceEEEEE
Confidence 344 9999999999999999999996 3456666665421 23455555554410000 3348999999
Q ss_pred ccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhhcCCCceEEEe-CC
Q 012383 220 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-AP 298 (465)
Q Consensus 220 EIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~-~P 298 (465)
|+|.+... ....|+.+++ ....++.+|++||.+..+++++.+ |+..+.. .|
T Consensus 115 e~~~l~~~-------------~~~~L~~~le-------------~~~~~~~~il~~~~~~~l~~~l~s--r~~~i~~~~~ 166 (323)
T 1sxj_B 115 EADSMTAG-------------AQQALRRTME-------------LYSNSTRFAFACNQSNKIIEPLQS--QCAILRYSKL 166 (323)
T ss_dssp SGGGSCHH-------------HHHTTHHHHH-------------HTTTTEEEEEEESCGGGSCHHHHT--TSEEEECCCC
T ss_pred CcccCCHH-------------HHHHHHHHHh-------------ccCCCceEEEEeCChhhchhHHHh--hceEEeecCC
Confidence 99976421 1223444444 223567899999999999999987 5554333 89
Q ss_pred CHHHHHHHHHHhccCC--CCChhH---HHHHhcCCC
Q 012383 299 TREDRIGVCKGIFRND--NVADDD---IVKLVDTFP 329 (465)
Q Consensus 299 ~~e~R~~Il~~~l~~~--~v~~~~---la~lt~gfs 329 (465)
+.++..+++..++... .++.+. +++.+.|-.
T Consensus 167 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~ 202 (323)
T 1sxj_B 167 SDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDM 202 (323)
T ss_dssp CHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 9999999998877543 344553 444444433
No 63
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.39 E-value=2e-12 Score=120.84 Aligned_cols=155 Identities=15% Similarity=0.174 Sum_probs=98.8
Q ss_pred HHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhC---CceEEecccccccCCCCChHHHHHHHHHHHHHHHHhC
Q 012383 135 HITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 211 (465)
Q Consensus 135 ~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg---~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~ 211 (465)
..++.+.... .+..++|+||||||||++|+++++++. ..++.++.+++...... .+. ...
T Consensus 41 ~~l~~~~~~~---~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~------~~~ 103 (242)
T 3bos_A 41 GALKSAASGD---GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASISTA--------LLE------GLE 103 (242)
T ss_dssp HHHHHHHHTC---SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSCGG--------GGT------TGG
T ss_pred HHHHHHHhCC---CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHH--------HHH------hcc
Confidence 3444444432 467999999999999999999999864 67888888777644311 111 124
Q ss_pred CceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC----CCChhhhc
Q 012383 212 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS----TLYAPLIR 287 (465)
Q Consensus 212 ~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~----~LD~ALlR 287 (465)
.+.+|||||+|.+..... ....|+.+++ .. .....+.+|+|||... .+++++.+
T Consensus 104 ~~~vliiDe~~~~~~~~~-----------~~~~l~~~l~--------~~---~~~~~~~ii~~~~~~~~~~~~~~~~l~~ 161 (242)
T 3bos_A 104 QFDLICIDDVDAVAGHPL-----------WEEAIFDLYN--------RV---AEQKRGSLIVSASASPMEAGFVLPDLVS 161 (242)
T ss_dssp GSSEEEEETGGGGTTCHH-----------HHHHHHHHHH--------HH---HHHCSCEEEEEESSCTTTTTCCCHHHHH
T ss_pred CCCEEEEeccccccCCHH-----------HHHHHHHHHH--------HH---HHcCCCeEEEEcCCCHHHHHHhhhhhhh
Confidence 578999999998754320 1122333333 11 1112333667776443 46688887
Q ss_pred CCCce--EEEe--CCCHHHHHHHHHHhccCC--CCChhHHHHHhcCCCc
Q 012383 288 DGRME--KFYW--APTREDRIGVCKGIFRND--NVADDDIVKLVDTFPG 330 (465)
Q Consensus 288 ~GRfd--~~i~--~P~~e~R~~Il~~~l~~~--~v~~~~la~lt~gfsg 330 (465)
||. ..+. .|+.+++.+|+..++... .++.+.+..+...+.|
T Consensus 162 --r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g 208 (242)
T 3bos_A 162 --RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR 208 (242)
T ss_dssp --HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT
T ss_pred --HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC
Confidence 663 5555 899999999999887643 4566666655554443
No 64
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.39 E-value=2.2e-12 Score=128.35 Aligned_cols=141 Identities=13% Similarity=0.204 Sum_probs=93.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhC------CceEEecccccccCCCCChHHHHHHHHHHHHHH------------HHhCC
Q 012383 151 ILGIWGGKGQGKSFQCELVFAKMG------INPIMMSAGELESGNAGEPAKLIRQRYREAADI------------IKKGK 212 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~elg------~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~------------i~~~~ 212 (465)
.+|||||||||||++|+++|++++ ..++.+++++.. ....+++.+...... .....
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDER------GISIVREKVKNFARLTVSKPSKHDLENYPCPP 133 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCC------CHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcccccc------chHHHHHHHHHHhhhcccccchhhcccCCCCC
Confidence 399999999999999999999864 356667765431 123333333322110 01235
Q ss_pred ceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhhcCCCce
Q 012383 213 MCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 292 (465)
Q Consensus 213 p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd 292 (465)
+.||||||+|.+... ....|+.+++ ....++.+|++||.+..+++++++ |+.
T Consensus 134 ~~vliiDE~~~l~~~-------------~~~~Ll~~le-------------~~~~~~~~il~~~~~~~l~~~l~s--R~~ 185 (353)
T 1sxj_D 134 YKIIILDEADSMTAD-------------AQSALRRTME-------------TYSGVTRFCLICNYVTRIIDPLAS--QCS 185 (353)
T ss_dssp CEEEEETTGGGSCHH-------------HHHHHHHHHH-------------HTTTTEEEEEEESCGGGSCHHHHH--HSE
T ss_pred ceEEEEECCCccCHH-------------HHHHHHHHHH-------------hcCCCceEEEEeCchhhCcchhhc--cCc
Confidence 679999999876432 1234555555 223456788899999999999988 676
Q ss_pred EEEe-CCCHHHHHHHHHHhccCCC--CChhHHHHHh
Q 012383 293 KFYW-APTREDRIGVCKGIFRNDN--VADDDIVKLV 325 (465)
Q Consensus 293 ~~i~-~P~~e~R~~Il~~~l~~~~--v~~~~la~lt 325 (465)
.+.. .|+.++...+++..+...+ ++.+.+..++
T Consensus 186 ~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~ 221 (353)
T 1sxj_D 186 KFRFKALDASNAIDRLRFISEQENVKCDDGVLERIL 221 (353)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHH
T ss_pred eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 5444 8899999999988876554 5555444333
No 65
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.36 E-value=7.2e-13 Score=131.94 Aligned_cols=146 Identities=16% Similarity=0.206 Sum_probs=82.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhCCceEE----ecccc---------------------cccCCCCChHHHH------H
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKMGINPIM----MSAGE---------------------LESGNAGEPAKLI------R 198 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~elg~~~i~----vs~s~---------------------L~s~~~Ge~~k~I------r 198 (465)
.++|||||||||||++|+++++.++..... +++.. +.....|.+...+ .
T Consensus 46 ~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 125 (350)
T 1g8p_A 46 GGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIE 125 (350)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHH
T ss_pred ceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccchhhhhccccccCCCcccccCCCcchhhheeechhh
Confidence 469999999999999999999998631110 01100 0000122222111 1
Q ss_pred HHHHHHH-----HHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCc-cccCCCccccCCCCCceEE
Q 012383 199 QRYREAA-----DIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT-CVQLPGMYNKEENPRVPII 272 (465)
Q Consensus 199 ~~F~~A~-----~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~-~v~l~g~~~~~~~~~V~VI 272 (465)
..|..+. ..+....++||||||||.+... ....|+.+++... .+...|.. .....++.+|
T Consensus 126 ~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~-------------~~~~Ll~~le~~~~~~~~~g~~-~~~~~~~~li 191 (350)
T 1g8p_A 126 RAISKGEKAFEPGLLARANRGYLYIDECNLLEDH-------------IVDLLLDVAQSGENVVERDGLS-IRHPARFVLV 191 (350)
T ss_dssp HHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHH-------------HHHHHHHHHHHSEEEECCTTCC-EEEECCEEEE
T ss_pred hhhcCCceeecCceeeecCCCEEEEeChhhCCHH-------------HHHHHHHHHhcCceEEEecceE-EeeCCceEEE
Confidence 1222110 0111224789999999976321 2234555555211 11111110 0112478899
Q ss_pred EEeCCCC-CCChhhhcCCCceEEEe--CC-CHHHHHHHHHHhc
Q 012383 273 VTGNDFS-TLYAPLIRDGRMEKFYW--AP-TREDRIGVCKGIF 311 (465)
Q Consensus 273 ~TTN~~~-~LD~ALlR~GRfd~~i~--~P-~~e~R~~Il~~~l 311 (465)
+|||..+ .++++|++ ||+..+. .| +.++|.+|++..+
T Consensus 192 ~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~il~~~~ 232 (350)
T 1g8p_A 192 GSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEVIRRRD 232 (350)
T ss_dssp EEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHHHHHHH
T ss_pred EEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHHH
Confidence 9999755 89999998 8887666 55 7888889987754
No 66
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.34 E-value=1.3e-11 Score=121.11 Aligned_cols=141 Identities=18% Similarity=0.223 Sum_probs=92.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhC-----CceEEecccccccCCCCChHHHHHHHHHHHHHH--HHhCCceEEEeccccc
Q 012383 151 ILGIWGGKGQGKSFQCELVFAKMG-----INPIMMSAGELESGNAGEPAKLIRQRYREAADI--IKKGKMCCLMINDLDA 223 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~elg-----~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~--i~~~~p~ILfIDEIDa 223 (465)
.+|||||||||||++|+++++++. ..++.+++++.. ....++..+...... .....+.||||||+|.
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~ 121 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDER------GINVIREKVKEFARTKPIGGASFKIIFLDEADA 121 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHH------HHHTTHHHHHHHHHSCCGGGCSCEEEEEETGGG
T ss_pred eEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccC------chHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCc
Confidence 499999999999999999999963 235666654321 111222322222100 0125689999999987
Q ss_pred ccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhhcCCCceEEEe-CCCHHH
Q 012383 224 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTRED 302 (465)
Q Consensus 224 i~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~-~P~~e~ 302 (465)
+... ....|+.+++ ....++.+|++||.++.+++++.+ |+..+.. .|+.++
T Consensus 122 l~~~-------------~~~~L~~~le-------------~~~~~~~~i~~~~~~~~l~~~l~s--r~~~~~~~~l~~~~ 173 (327)
T 1iqp_A 122 LTQD-------------AQQALRRTME-------------MFSSNVRFILSCNYSSKIIEPIQS--RCAIFRFRPLRDED 173 (327)
T ss_dssp SCHH-------------HHHHHHHHHH-------------HTTTTEEEEEEESCGGGSCHHHHH--TEEEEECCCCCHHH
T ss_pred CCHH-------------HHHHHHHHHH-------------hcCCCCeEEEEeCCccccCHHHHh--hCcEEEecCCCHHH
Confidence 6321 1234445555 223567899999999999999987 6664433 888999
Q ss_pred HHHHHHHhccCCC--CChhHHHHHh
Q 012383 303 RIGVCKGIFRNDN--VADDDIVKLV 325 (465)
Q Consensus 303 R~~Il~~~l~~~~--v~~~~la~lt 325 (465)
..++++.++...+ ++.+.+..+.
T Consensus 174 ~~~~l~~~~~~~~~~~~~~~~~~l~ 198 (327)
T 1iqp_A 174 IAKRLRYIAENEGLELTEEGLQAIL 198 (327)
T ss_dssp HHHHHHHHHHTTTCEECHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 9999988876655 4554443333
No 67
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.33 E-value=1.2e-11 Score=139.28 Aligned_cols=144 Identities=15% Similarity=0.175 Sum_probs=95.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEecccccccC-----CCCChHHHH----HHHHHHHHHHHHhCCceEE
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG-----NAGEPAKLI----RQRYREAADIIKKGKMCCL 216 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~s~L~s~-----~~Ge~~k~I----r~~F~~A~~~i~~~~p~IL 216 (465)
...+||+||||||||++|+++++.+ +.+++.++++++... ..|.+...+ ...|..+ ++...++||
T Consensus 588 ~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~~g~l~~~---~~~~~~~vl 664 (854)
T 1qvr_A 588 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEA---VRRRPYSVI 664 (854)
T ss_dssp SEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC--------------CHHHH---HHHCSSEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcCccccchHHHH---HHhCCCeEE
Confidence 3589999999999999999999998 789999998877543 222211111 0112222 245567999
Q ss_pred EecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCC-------------------
Q 012383 217 MINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND------------------- 277 (465)
Q Consensus 217 fIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~------------------- 277 (465)
||||||.+. ..+...|++++++.... ++.-......+++||+|||.
T Consensus 665 ~lDEi~~l~-------------~~~~~~Ll~~l~~~~~~--~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~ 729 (854)
T 1qvr_A 665 LFDEIEKAH-------------PDVFNILLQILDDGRLT--DSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIR 729 (854)
T ss_dssp EESSGGGSC-------------HHHHHHHHHHHTTTEEC--CSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHH
T ss_pred EEecccccC-------------HHHHHHHHHHhccCceE--CCCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHH
Confidence 999998642 33556777888854321 11111122357789999997
Q ss_pred -------CCCCChhhhcCCCceEEEe--CCCHHHHHHHHHHhcc
Q 012383 278 -------FSTLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFR 312 (465)
Q Consensus 278 -------~~~LD~ALlR~GRfd~~i~--~P~~e~R~~Il~~~l~ 312 (465)
...+.|+|+. ||+..+. +|+.++...|++.++.
T Consensus 730 ~~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~~l~ 771 (854)
T 1qvr_A 730 DEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQLS 771 (854)
T ss_dssp HHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCHHHHH--hcCeEEeCCCCCHHHHHHHHHHHHH
Confidence 2356777775 8977766 8899999999877764
No 68
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.31 E-value=7.3e-12 Score=124.77 Aligned_cols=138 Identities=11% Similarity=0.100 Sum_probs=87.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccc------cccCCCCChHHHHHHHHHHHHHHHHhCC---ceEEEecc
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE------LESGNAGEPAKLIRQRYREAADIIKKGK---MCCLMIND 220 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~------L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~---p~ILfIDE 220 (465)
.++|||||||||||++|+++|+.++.+++.+++.. +.....-... ...|. .... .+||||||
T Consensus 47 ~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g~~~~~~~---~~~~~------~~~g~l~~~vl~iDE 117 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIGTMIYNQH---KGNFE------VKKGPVFSNFILADE 117 (331)
T ss_dssp CCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHEEEEEETT---TTEEE------EEECTTCSSEEEEET
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCCceeecCC---CCceE------eccCcccccEEEEEc
Confidence 58999999999999999999999999988877531 1110000000 00000 0111 37999999
Q ss_pred cccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC-----CCChhhhcCCCceEEE
Q 012383 221 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----TLYAPLIRDGRMEKFY 295 (465)
Q Consensus 221 IDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~-----~LD~ALlR~GRfd~~i 295 (465)
+|.+.. .....|++.++... +.+.|.. .....++.||+|+|..+ .|+++|++ ||+..+
T Consensus 118 i~~~~~-------------~~~~~Ll~~l~~~~-~~~~g~~-~~~~~~~~viat~np~~~~~~~~l~~~l~~--Rf~~~i 180 (331)
T 2r44_A 118 VNRSPA-------------KVQSALLECMQEKQ-VTIGDTT-YPLDNPFLVLATQNPVEQEGTYPLPEAQVD--RFMMKI 180 (331)
T ss_dssp GGGSCH-------------HHHHHHHHHHHHSE-EEETTEE-EECCSSCEEEEEECTTCCSCCCCCCHHHHT--TSSEEE
T ss_pred cccCCH-------------HHHHHHHHHHhcCc-eeeCCEE-EECCCCEEEEEecCCCcccCcccCCHHHHh--heeEEE
Confidence 987532 12334445555211 1112211 11234677888888443 38999998 888666
Q ss_pred e--CCCHHHHHHHHHHhccC
Q 012383 296 W--APTREDRIGVCKGIFRN 313 (465)
Q Consensus 296 ~--~P~~e~R~~Il~~~l~~ 313 (465)
. .|+.+++.+|++.+...
T Consensus 181 ~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 181 HLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp ECCCCCHHHHHHHHHHHHCT
T ss_pred EcCCCCHHHHHHHHHhcccc
Confidence 6 99999999999988764
No 69
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.29 E-value=3.8e-11 Score=119.84 Aligned_cols=154 Identities=15% Similarity=0.250 Sum_probs=96.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHh------CCceEEeccccccc----------C------CCCChHHHHHHHHHHH
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKM------GINPIMMSAGELES----------G------NAGEPAKLIRQRYREA 204 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~el------g~~~i~vs~s~L~s----------~------~~Ge~~k~Ir~~F~~A 204 (465)
..+..++|+||||||||++++++++++ +..++.+++....+ . ..|.+... .+...
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~---~~~~l 119 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAE---LYRRL 119 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHH---HHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHH---HHHHH
Confidence 456799999999999999999999998 88888888653211 0 12222222 22222
Q ss_pred HHHHH-hCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC---CC
Q 012383 205 ADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF---ST 280 (465)
Q Consensus 205 ~~~i~-~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~---~~ 280 (465)
.+.+. ...|+||||||+|.+..... . ..+ ..|+.+++ .. ...++.+|++||++ ..
T Consensus 120 ~~~l~~~~~~~vlilDE~~~l~~~~~---~-----~~l-~~l~~~~~--------~~----~~~~~~~I~~~~~~~~~~~ 178 (386)
T 2qby_A 120 VKAVRDYGSQVVIVLDEIDAFVKKYN---D-----DIL-YKLSRINS--------EV----NKSKISFIGITNDVKFVDL 178 (386)
T ss_dssp HHHHHTCCSCEEEEEETHHHHHHSSC---S-----THH-HHHHHHHH--------SC----CC--EEEEEEESCGGGGGG
T ss_pred HHHHhccCCeEEEEEcChhhhhccCc---C-----HHH-HHHhhchh--------hc----CCCeEEEEEEECCCChHhh
Confidence 22224 34599999999998865431 0 112 22333333 11 34578999999988 46
Q ss_pred CChhhhcCCCce-EEEe--CCCHHHHHHHHHHhcc----CCCCChh---HHHHHhc
Q 012383 281 LYAPLIRDGRME-KFYW--APTREDRIGVCKGIFR----NDNVADD---DIVKLVD 326 (465)
Q Consensus 281 LD~ALlR~GRfd-~~i~--~P~~e~R~~Il~~~l~----~~~v~~~---~la~lt~ 326 (465)
+++.+.+ ||. +.+. .++.++..+|+...+. ...++.+ .+++.+.
T Consensus 179 ~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~ 232 (386)
T 2qby_A 179 LDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAA 232 (386)
T ss_dssp CTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHH
T ss_pred hCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHH
Confidence 8888887 442 2344 8899999999887653 2345544 3444444
No 70
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.29 E-value=1.7e-12 Score=125.30 Aligned_cols=133 Identities=17% Similarity=0.189 Sum_probs=80.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHhC---CceEEecccccccCCCCChHHHHHHHHH-------HHH----HHHHhCCce
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGELESGNAGEPAKLIRQRYR-------EAA----DIIKKGKMC 214 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~elg---~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~-------~A~----~~i~~~~p~ 214 (465)
+..+||+||||||||++|+++++.+. .+++.++++.+... .....+|. .+. ..+.....+
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~------~~~~~l~g~~~~~~~g~~~~~~~~l~~a~~~ 102 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNEN------LLDSELFGHEAGAFTGAQKRHPGRFERADGG 102 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHH------HHHHHHHCCC---------CCCCHHHHTTTS
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChh------HHHHHhcCCcccccccccccccchhhhcCCc
Confidence 46899999999999999999999875 67999988765311 00111111 110 011223467
Q ss_pred EEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC-------CCCChhhhc
Q 012383 215 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF-------STLYAPLIR 287 (465)
Q Consensus 215 ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~-------~~LD~ALlR 287 (465)
+|||||||.+.. ..+..|+.++++.....+.+. .....++.||+|||.. ..+.++|.+
T Consensus 103 ~l~lDEi~~l~~-------------~~q~~Ll~~l~~~~~~~~g~~--~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~ 167 (265)
T 2bjv_A 103 TLFLDELATAPM-------------MVQEKLLRVIEYGELERVGGS--QPLQVNVRLVCATNADLPAMVNEGTFRADLLD 167 (265)
T ss_dssp EEEEESGGGSCH-------------HHHHHHHHHHHHCEECCCCC----CEECCCEEEEEESSCHHHHHHHTSSCHHHHH
T ss_pred EEEEechHhcCH-------------HHHHHHHHHHHhCCeecCCCc--ccccCCeEEEEecCcCHHHHHHcCCccHHHHH
Confidence 999999997642 123445566663221111111 1123568899999985 357788886
Q ss_pred CCCceE-EEeCCCHHHHH
Q 012383 288 DGRMEK-FYWAPTREDRI 304 (465)
Q Consensus 288 ~GRfd~-~i~~P~~e~R~ 304 (465)
||.. .+.+|...+|.
T Consensus 168 --Rl~~~~i~lp~L~~R~ 183 (265)
T 2bjv_A 168 --ALAFDVVQLPPLRERE 183 (265)
T ss_dssp --HHCSEEEECCCGGGCH
T ss_pred --hhcCcEEeCCChhhhh
Confidence 7764 45577766553
No 71
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.28 E-value=1.2e-10 Score=117.25 Aligned_cols=157 Identities=13% Similarity=0.073 Sum_probs=99.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccC
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAG 226 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~ 226 (465)
.++..++||||||||||+|++++|++++.++...+++.+.. ...+...+. .....+|+||||++.+..
T Consensus 49 ~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~------~~~l~~~~~------~~~~~~v~~iDE~~~l~~ 116 (334)
T 1in4_A 49 EVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK------QGDMAAILT------SLERGDVLFIDEIHRLNK 116 (334)
T ss_dssp CCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS------HHHHHHHHH------HCCTTCEEEEETGGGCCH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC------HHHHHHHHH------HccCCCEEEEcchhhcCH
Confidence 35678999999999999999999999999888777654431 223333322 123568999999987642
Q ss_pred CCCCCcccchhhHHHHHHHHHhhcCCc-cccC-CCcc---ccCCCCCceEEEEeCCCCCCChhhhcCCCceEEEe--CCC
Q 012383 227 RMGGTTQYTVNNQMVNATLMNIADNPT-CVQL-PGMY---NKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 299 (465)
Q Consensus 227 ~r~~~~~~~v~~~~v~~~Ll~llD~~~-~v~l-~g~~---~~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~--~P~ 299 (465)
. +...|+..+.... .+-+ .+.. .......+.+|++||++..|++++++ ||...+. .|+
T Consensus 117 ~-------------~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~ 181 (334)
T 1in4_A 117 A-------------VEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRS--RFGIILELDFYT 181 (334)
T ss_dssp H-------------HHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCC
T ss_pred H-------------HHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHH--hcCceeeCCCCC
Confidence 1 1223333332110 0000 0000 00123467888899999999999997 7765555 999
Q ss_pred HHHHHHHHHHhccCC--CCChhHHHHHhcCCCc
Q 012383 300 REDRIGVCKGIFRND--NVADDDIVKLVDTFPG 330 (465)
Q Consensus 300 ~e~R~~Il~~~l~~~--~v~~~~la~lt~gfsg 330 (465)
.+++.+|++...... .++.+.+..++....|
T Consensus 182 ~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G 214 (334)
T 1in4_A 182 VKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG 214 (334)
T ss_dssp HHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCC
Confidence 999999998876543 4555555555554443
No 72
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.28 E-value=7.3e-11 Score=118.24 Aligned_cols=144 Identities=15% Similarity=0.175 Sum_probs=92.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHhCCc------------------------eEEecccccccCCCCChHHHHHHHHH
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQRYR 202 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~elg~~------------------------~i~vs~s~L~s~~~Ge~~k~Ir~~F~ 202 (465)
+.|..+||+||||||||++|+++|+.++.. ++.++++. . .....++.++.
T Consensus 36 ~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~l~~ 109 (373)
T 1jr3_A 36 RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAAS----R--TKVEDTRDLLD 109 (373)
T ss_dssp CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEEETTC----S--CCSSCHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEEecccc----c--CCHHHHHHHHH
Confidence 446689999999999999999999998652 22222211 0 11123455555
Q ss_pred HHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCC
Q 012383 203 EAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLY 282 (465)
Q Consensus 203 ~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD 282 (465)
.+......+.+.||||||+|.+... ....|+.+++ ....++.+|++||++..++
T Consensus 110 ~~~~~~~~~~~~vliiDe~~~l~~~-------------~~~~Ll~~le-------------~~~~~~~~Il~~~~~~~l~ 163 (373)
T 1jr3_A 110 NVQYAPARGRFKVYLIDEVHMLSRH-------------SFNALLKTLE-------------EPPEHVKFLLATTDPQKLP 163 (373)
T ss_dssp HTTSCCSSSSSEEEEEECGGGSCHH-------------HHHHHHHHHH-------------SCCSSEEEEEEESCGGGSC
T ss_pred HHhhccccCCeEEEEEECcchhcHH-------------HHHHHHHHHh-------------cCCCceEEEEEeCChHhCc
Confidence 5410001345789999999876311 1234445555 2345688999999999999
Q ss_pred hhhhcCCCceEEEe-CCCHHHHHHHHHHhccCCC--CChhHHHHH
Q 012383 283 APLIRDGRMEKFYW-APTREDRIGVCKGIFRNDN--VADDDIVKL 324 (465)
Q Consensus 283 ~ALlR~GRfd~~i~-~P~~e~R~~Il~~~l~~~~--v~~~~la~l 324 (465)
+++++ |+..+-. .|+.++..++++.++...+ ++.+.+..+
T Consensus 164 ~~l~s--r~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l 206 (373)
T 1jr3_A 164 VTILS--RCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLL 206 (373)
T ss_dssp HHHHT--TSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHH
T ss_pred HHHHh--heeEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 99987 5543333 8899999999988876544 444433333
No 73
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.27 E-value=2.6e-11 Score=122.04 Aligned_cols=150 Identities=13% Similarity=0.129 Sum_probs=98.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHhCCce------------------------EEecccccccCCCCChHHHHHHHHH
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINP------------------------IMMSAGELESGNAGEPAKLIRQRYR 202 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~elg~~~------------------------i~vs~s~L~s~~~Ge~~k~Ir~~F~ 202 (465)
+.|.++|||||||+|||++|+++|+.+.... +.+.+.+ .-..-+...+|++.+
T Consensus 22 ~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~---~~~~~~i~~ir~l~~ 98 (334)
T 1a5t_A 22 RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEK---GKNTLGVDAVREVTE 98 (334)
T ss_dssp CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCT---TCSSBCHHHHHHHHH
T ss_pred CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccc---cCCCCCHHHHHHHHH
Confidence 5678999999999999999999999976432 2222210 000123445677766
Q ss_pred HHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCC
Q 012383 203 EAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLY 282 (465)
Q Consensus 203 ~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD 282 (465)
.+...-..+...|+||||+|.+... ....|+..++ +...++.+|++||.++.|+
T Consensus 99 ~~~~~~~~~~~kvviIdead~l~~~-------------a~naLLk~lE-------------ep~~~~~~Il~t~~~~~l~ 152 (334)
T 1a5t_A 99 KLNEHARLGGAKVVWVTDAALLTDA-------------AANALLKTLE-------------EPPAETWFFLATREPERLL 152 (334)
T ss_dssp HTTSCCTTSSCEEEEESCGGGBCHH-------------HHHHHHHHHT-------------SCCTTEEEEEEESCGGGSC
T ss_pred HHhhccccCCcEEEEECchhhcCHH-------------HHHHHHHHhc-------------CCCCCeEEEEEeCChHhCc
Confidence 6511001345789999999976321 1234555555 3456788999999999999
Q ss_pred hhhhcCCCceEEEe-CCCHHHHHHHHHHhccCCCCChhH---HHHHhcCCCc
Q 012383 283 APLIRDGRMEKFYW-APTREDRIGVCKGIFRNDNVADDD---IVKLVDTFPG 330 (465)
Q Consensus 283 ~ALlR~GRfd~~i~-~P~~e~R~~Il~~~l~~~~v~~~~---la~lt~gfsg 330 (465)
+++++ |+.++.. .|+.++..+++.... .++.+. +++++.|-.+
T Consensus 153 ~ti~S--Rc~~~~~~~~~~~~~~~~L~~~~---~~~~~~~~~l~~~s~G~~r 199 (334)
T 1a5t_A 153 ATLRS--RCRLHYLAPPPEQYAVTWLSREV---TMSQDALLAALRLSAGSPG 199 (334)
T ss_dssp HHHHT--TSEEEECCCCCHHHHHHHHHHHC---CCCHHHHHHHHHHTTTCHH
T ss_pred HHHhh--cceeeeCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHcCCCHH
Confidence 99997 6655444 899999999988776 455543 4444444333
No 74
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.26 E-value=1.1e-11 Score=109.84 Aligned_cols=91 Identities=10% Similarity=0.102 Sum_probs=65.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccc
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAG 224 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai 224 (465)
.+..||||||||||||++|++|++.. +.+|+ ++++.+.+. ......|..| ..++|||||||.+
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~------~~~~~~~~~a-------~~g~l~ldei~~l 88 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA------PQLNDFIALA-------QGGTLVLSHPEHL 88 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS------SCHHHHHHHH-------TTSCEEEECGGGS
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc------hhhhcHHHHc-------CCcEEEEcChHHC
Confidence 34569999999999999999999986 67888 988877644 1234455555 4579999999976
Q ss_pred cCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC
Q 012383 225 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF 278 (465)
Q Consensus 225 ~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~ 278 (465)
... .+..|+.++. ....++.+|+|||.+
T Consensus 89 ~~~-------------~q~~Ll~~l~-------------~~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 89 TRE-------------QQYHLVQLQS-------------QEHRPFRLIGIGDTS 116 (145)
T ss_dssp CHH-------------HHHHHHHHHH-------------SSSCSSCEEEEESSC
T ss_pred CHH-------------HHHHHHHHHh-------------hcCCCEEEEEECCcC
Confidence 421 2233444443 234567899999974
No 75
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.26 E-value=2.8e-12 Score=116.85 Aligned_cols=102 Identities=17% Similarity=0.167 Sum_probs=67.9
Q ss_pred ccccccccccCCCCCchhHHHHHHHHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHh----CCceEEeccccc
Q 012383 110 LRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSAGEL 185 (465)
Q Consensus 110 ~r~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~el----g~~~i~vs~s~L 185 (465)
++.++|++.... .+ ..+.+...+++|+....+..+.+++|+||||||||+|++++++.+ |..++.++..++
T Consensus 4 ~~~~~f~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~ 78 (180)
T 3ec2_A 4 YWNANLDTYHPK---NV--SQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDL 78 (180)
T ss_dssp CTTCCSSSCCCC---SH--HHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHH
T ss_pred hhhCccccccCC---CH--HHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 455667775543 12 234566778888887777778999999999999999999999986 667777776665
Q ss_pred ccCCCCChHHHHHHHHHHHH--HHH-HhCCceEEEecccccc
Q 012383 186 ESGNAGEPAKLIRQRYREAA--DII-KKGKMCCLMINDLDAG 224 (465)
Q Consensus 186 ~s~~~Ge~~k~Ir~~F~~A~--~~i-~~~~p~ILfIDEIDai 224 (465)
... +...+.... ..+ ....|.+|||||++..
T Consensus 79 ~~~--------~~~~~~~~~~~~~~~~~~~~~llilDE~~~~ 112 (180)
T 3ec2_A 79 IFR--------LKHLMDEGKDTKFLKTVLNSPVLVLDDLGSE 112 (180)
T ss_dssp HHH--------HHHHHHHTCCSHHHHHHHTCSEEEEETCSSS
T ss_pred HHH--------HHHHhcCchHHHHHHHhcCCCEEEEeCCCCC
Confidence 422 111111100 011 1346889999999753
No 76
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.26 E-value=1.3e-10 Score=116.12 Aligned_cols=148 Identities=17% Similarity=0.332 Sum_probs=89.0
Q ss_pred HHHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCC-----------------------------ceEEeccc
Q 012383 133 VVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI-----------------------------NPIMMSAG 183 (465)
Q Consensus 133 ~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~-----------------------------~~i~vs~s 183 (465)
+....++++... .+.|. ++|+||||||||++++++++++.. .++.+.++
T Consensus 22 ~~~~l~~~~~~~-~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (354)
T 1sxj_E 22 LTNFLKSLSDQP-RDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS 99 (354)
T ss_dssp HHHHHHTTTTCT-TCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC
T ss_pred HHHHHHHHHhhC-CCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHh
Confidence 344455555212 23455 999999999999999999997421 11122211
Q ss_pred ccccCCCCC-hHHHHHHHHHHHHHHHH----------hCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCC
Q 012383 184 ELESGNAGE-PAKLIRQRYREAADIIK----------KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNP 252 (465)
Q Consensus 184 ~L~s~~~Ge-~~k~Ir~~F~~A~~~i~----------~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~ 252 (465)
. .+. ....+++.+..+..... ...|.||||||+|.+.. .....|+.+++
T Consensus 100 ~-----~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~-------------~~~~~L~~~le-- 159 (354)
T 1sxj_E 100 D-----MGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTK-------------DAQAALRRTME-- 159 (354)
T ss_dssp ---------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCH-------------HHHHHHHHHHH--
T ss_pred h-----cCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCH-------------HHHHHHHHHHH--
Confidence 1 111 11134454444311000 23678999999987421 11233444544
Q ss_pred ccccCCCccccCCCCCceEEEEeCCCCCCChhhhcCCCceEEEe-CCCHHHHHHHHHHhccCCC
Q 012383 253 TCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFRNDN 315 (465)
Q Consensus 253 ~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~-~P~~e~R~~Il~~~l~~~~ 315 (465)
....++.+|++||+++.+.+++++ |+..+-. .|+.++..++++.++...+
T Consensus 160 -----------~~~~~~~~Il~t~~~~~l~~~l~s--R~~~~~~~~~~~~~~~~~l~~~~~~~~ 210 (354)
T 1sxj_E 160 -----------KYSKNIRLIMVCDSMSPIIAPIKS--QCLLIRCPAPSDSEISTILSDVVTNER 210 (354)
T ss_dssp -----------HSTTTEEEEEEESCSCSSCHHHHT--TSEEEECCCCCHHHHHHHHHHHHHHHT
T ss_pred -----------hhcCCCEEEEEeCCHHHHHHHHHh--hceEEecCCcCHHHHHHHHHHHHHHcC
Confidence 223457899999999999999987 6644333 8999999999988876544
No 77
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.25 E-value=4.6e-11 Score=120.00 Aligned_cols=150 Identities=11% Similarity=0.124 Sum_probs=94.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh----CCceEEecccccccC----------------CCCChHHHHHHHHHHHHHHHH
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKM----GINPIMMSAGELESG----------------NAGEPAKLIRQRYREAADIIK 209 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~el----g~~~i~vs~s~L~s~----------------~~Ge~~k~Ir~~F~~A~~~i~ 209 (465)
..++|+||||||||++++++++.+ +..++.+++....+. ..|.+... ++......+.
T Consensus 45 ~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~---~~~~l~~~l~ 121 (389)
T 1fnn_A 45 PRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDE---FLALLVEHLR 121 (389)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHH---HHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHH---HHHHHHHHHh
Confidence 389999999999999999999998 677888876543210 01222222 2222222223
Q ss_pred -hCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC---CCCChhh
Q 012383 210 -KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF---STLYAPL 285 (465)
Q Consensus 210 -~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~---~~LD~AL 285 (465)
...|.||||||+|.+ . ......|+.+++ .. ......++.||++||++ +.+++.+
T Consensus 122 ~~~~~~vlilDE~~~l----~---------~~~~~~L~~~~~--------~~-~~~~~~~~~iI~~~~~~~~~~~l~~~~ 179 (389)
T 1fnn_A 122 ERDLYMFLVLDDAFNL----A---------PDILSTFIRLGQ--------EA-DKLGAFRIALVIVGHNDAVLNNLDPST 179 (389)
T ss_dssp HTTCCEEEEEETGGGS----C---------HHHHHHHHHHTT--------CH-HHHSSCCEEEEEEESSTHHHHTSCHHH
T ss_pred hcCCeEEEEEECcccc----c---------hHHHHHHHHHHH--------hC-CCCCcCCEEEEEEECCchHHHHhCHHh
Confidence 456999999999987 1 122334444444 11 00012578999999998 7788888
Q ss_pred hcCCCceE-EEe--CCCHHHHHHHHHHhccC----CCCChh---HHHHHhc
Q 012383 286 IRDGRMEK-FYW--APTREDRIGVCKGIFRN----DNVADD---DIVKLVD 326 (465)
Q Consensus 286 lR~GRfd~-~i~--~P~~e~R~~Il~~~l~~----~~v~~~---~la~lt~ 326 (465)
.+ ||.. .+. .++.++..++++..+.. ..++.+ .+.+.+.
T Consensus 180 ~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 228 (389)
T 1fnn_A 180 RG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITG 228 (389)
T ss_dssp HH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHS
T ss_pred hh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHh
Confidence 77 5553 344 77899999998776643 356655 3455553
No 78
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.24 E-value=2.5e-12 Score=139.77 Aligned_cols=138 Identities=17% Similarity=0.179 Sum_probs=86.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEEe----cccccccCCC-----CChHHHHHHHHHHHHHHHHhCCceEEEeccc
Q 012383 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMM----SAGELESGNA-----GEPAKLIRQRYREAADIIKKGKMCCLMINDL 221 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~elg~~~i~v----s~s~L~s~~~-----Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEI 221 (465)
.|||+||||||||++|+++|+.++..++.. ++..+..... |+.. .-...+..| ..+|||||||
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~-~~~G~l~~A-------~~gil~IDEi 400 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYY-LEAGALVLA-------DGGIAVIDEI 400 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSGGGTSSCS-EEECHHHHH-------SSSEECCTTT
T ss_pred ceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeecccccccc-ccCCeeEec-------CCCcEEeehh
Confidence 799999999999999999999987654432 2222221111 1100 000112222 4579999999
Q ss_pred ccccCCCCCCcccchhhHHHHHHHHHhhcCCccc-cCCCccccCCCCCceEEEEeCCCC-------------CCChhhhc
Q 012383 222 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCV-QLPGMYNKEENPRVPIIVTGNDFS-------------TLYAPLIR 287 (465)
Q Consensus 222 Dai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v-~l~g~~~~~~~~~V~VI~TTN~~~-------------~LD~ALlR 287 (465)
|++... .+..|++++++.+.. .-.|. ......++.||+|||... .|++||++
T Consensus 401 d~l~~~-------------~q~~Ll~~le~~~i~i~~~g~-~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~ 466 (595)
T 3f9v_A 401 DKMRDE-------------DRVAIHEAMEQQTVSIAKAGI-VAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILS 466 (595)
T ss_dssp TCCCSH-------------HHHHHHHHHHSSSEEEESSSS-EEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGG
T ss_pred hhCCHh-------------HhhhhHHHHhCCEEEEecCCc-EEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHh
Confidence 986322 234566666632211 00011 112246789999999987 89999998
Q ss_pred CCCceEEEe---CCCHHHHHHHHHHhccC
Q 012383 288 DGRMEKFYW---APTREDRIGVCKGIFRN 313 (465)
Q Consensus 288 ~GRfd~~i~---~P~~e~R~~Il~~~l~~ 313 (465)
|||..+. .|+.+ ...|.+.++..
T Consensus 467 --RFDl~~~~~~~~~~e-~~~i~~~il~~ 492 (595)
T 3f9v_A 467 --RFDLIFILKDQPGEQ-DRELANYILDV 492 (595)
T ss_dssp --GCSCCEEECCTTHHH-HHHHHHHHHTT
T ss_pred --hCeEEEEeCCCCCHH-HHHHHHHHHHH
Confidence 9985554 77777 88887777654
No 79
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.23 E-value=1e-11 Score=152.89 Aligned_cols=143 Identities=13% Similarity=0.147 Sum_probs=93.0
Q ss_pred CeEEEEEcCCCCcHHHHHHH-HHHHhCCceEEecccccccCCCCChHHHHHHHHHHHHHHHH-----------hCCceEE
Q 012383 149 PLILGIWGGKGQGKSFQCEL-VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-----------KGKMCCL 216 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAra-IA~elg~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~-----------~~~p~IL 216 (465)
.+++||+||||||||++|+. +++..+..++.++.+... +...+...+....+..+ .++++||
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~t------s~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~Vl 1340 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDT------TTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVL 1340 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTC------CHHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCC------CHHHHHHHHHHHhhhccccCCccccCCCCCceEEE
Confidence 47999999999999999954 544446677777765433 22344444443211000 2345799
Q ss_pred EecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccC-----CCCCceEEEEeCCCC-----CCChhhh
Q 012383 217 MINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKE-----ENPRVPIIVTGNDFS-----TLYAPLI 286 (465)
Q Consensus 217 fIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~-----~~~~V~VI~TTN~~~-----~LD~ALl 286 (465)
||||||.-...+.|. +...++|.++++. .|++... ...++.+|+|||.+. .|+++|+
T Consensus 1341 FiDEinmp~~d~yg~-------q~~lelLRq~le~------gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rll 1407 (2695)
T 4akg_A 1341 FCDEINLPKLDKYGS-------QNVVLFLRQLMEK------QGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFT 1407 (2695)
T ss_dssp EEETTTCSCCCSSSC-------CHHHHHHHHHHHT------SSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHH
T ss_pred EecccccccccccCc-------hhHHHHHHHHHhc------CCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhh
Confidence 999999755554322 2344455555552 2333221 125689999999994 8999999
Q ss_pred cCCCceEEEe-CCCHHHHHHHHHHhcc
Q 012383 287 RDGRMEKFYW-APTREDRIGVCKGIFR 312 (465)
Q Consensus 287 R~GRfd~~i~-~P~~e~R~~Il~~~l~ 312 (465)
| ||..+.. .|+.+++..|+..++.
T Consensus 1408 R--rf~vi~i~~P~~~~l~~I~~~il~ 1432 (2695)
T 4akg_A 1408 R--HAAILYLGYPSGKSLSQIYEIYYK 1432 (2695)
T ss_dssp T--TEEEEECCCCTTTHHHHHHHHHHH
T ss_pred h--eeeEEEeCCCCHHHHHHHHHHHHH
Confidence 9 7744333 9999999999877763
No 80
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.22 E-value=5.8e-11 Score=119.09 Aligned_cols=145 Identities=14% Similarity=0.230 Sum_probs=92.6
Q ss_pred HHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCC-----ceEEecccccccCCCCChHHHHHHHHHHHHHHH
Q 012383 134 VHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI-----NPIMMSAGELESGNAGEPAKLIRQRYREAADII 208 (465)
Q Consensus 134 ~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~-----~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i 208 (465)
....+..+... +.|. +|||||||||||++++++|+.+.. .++.++.+.. .| ...++.......+..
T Consensus 34 ~~~L~~~i~~g--~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~----~~--~~~ir~~i~~~~~~~ 104 (340)
T 1sxj_C 34 ITTVRKFVDEG--KLPH-LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDD----RG--IDVVRNQIKDFASTR 104 (340)
T ss_dssp HHHHHHHHHTT--CCCC-EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSC----CS--HHHHHTHHHHHHHBC
T ss_pred HHHHHHHHhcC--CCce-EEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCccc----cc--HHHHHHHHHHHHhhc
Confidence 33444444433 3344 999999999999999999999632 3555555432 12 334454444331100
Q ss_pred H--hCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhh
Q 012383 209 K--KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLI 286 (465)
Q Consensus 209 ~--~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALl 286 (465)
. ...+.|++|||+|.+... ....|+.+++ .....+.+|++||.+..+.++++
T Consensus 105 ~~~~~~~~viiiDe~~~l~~~-------------~~~~L~~~le-------------~~~~~~~~il~~n~~~~i~~~i~ 158 (340)
T 1sxj_C 105 QIFSKGFKLIILDEADAMTNA-------------AQNALRRVIE-------------RYTKNTRFCVLANYAHKLTPALL 158 (340)
T ss_dssp CSSSCSCEEEEETTGGGSCHH-------------HHHHHHHHHH-------------HTTTTEEEEEEESCGGGSCHHHH
T ss_pred ccCCCCceEEEEeCCCCCCHH-------------HHHHHHHHHh-------------cCCCCeEEEEEecCccccchhHH
Confidence 0 134789999999976321 1233445555 22345678899999999999998
Q ss_pred cCCCceEEEe-CCCHHHHHHHHHHhccCCC
Q 012383 287 RDGRMEKFYW-APTREDRIGVCKGIFRNDN 315 (465)
Q Consensus 287 R~GRfd~~i~-~P~~e~R~~Il~~~l~~~~ 315 (465)
+ |+..+.. .++.++..+++...+...+
T Consensus 159 s--R~~~~~~~~l~~~~~~~~l~~~~~~~~ 186 (340)
T 1sxj_C 159 S--QCTRFRFQPLPQEAIERRIANVLVHEK 186 (340)
T ss_dssp T--TSEEEECCCCCHHHHHHHHHHHHHTTT
T ss_pred h--hceeEeccCCCHHHHHHHHHHHHHHcC
Confidence 7 6665444 7788888888888775443
No 81
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.19 E-value=3.6e-11 Score=128.15 Aligned_cols=140 Identities=13% Similarity=0.107 Sum_probs=81.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhCC--ceEEecc-----cccccCCCCChHHHHHHHHHHHHHHHHhC---CceEEEec
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSA-----GELESGNAGEPAKLIRQRYREAADIIKKG---KMCCLMIN 219 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~elg~--~~i~vs~-----s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~---~p~ILfID 219 (465)
..|||+||||||||++|+++|+.++. +|..+.. +++...+.+..... ...|..+ ..+ .++|||||
T Consensus 42 ~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~~~~~~~~~-~g~~~~~----~~g~l~~~~IL~ID 116 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKD-EGRYERL----TSGYLPEAEIVFLD 116 (500)
T ss_dssp CEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCCBC-----------CBC----CTTSGGGCSEEEEE
T ss_pred CeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCcccHHHHhh-chhHHhh----hccCCCcceeeeHH
Confidence 58999999999999999999999854 3333322 33433333221111 1222222 222 47799999
Q ss_pred ccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCC---CChhhhcCCCceEEEe
Q 012383 220 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFST---LYAPLIRDGRMEKFYW 296 (465)
Q Consensus 220 EIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~---LD~ALlR~GRfd~~i~ 296 (465)
||+.+. ..++..|+.+++.-. +...|.. ...+..++|+|||.... +.+++++ ||...++
T Consensus 117 EI~r~~-------------~~~q~~LL~~lee~~-v~i~G~~--~~~~~~~iI~ATN~lpe~~~~~~aLld--RF~~~i~ 178 (500)
T 3nbx_X 117 EIWKAG-------------PAILNTLLTAINERQ-FRNGAHV--EKIPMRLLVAASNELPEADSSLEALYD--RMLIRLW 178 (500)
T ss_dssp SGGGCC-------------HHHHHHHHHHHHSSE-EECSSSE--EECCCCEEEEEESSCCCTTCTTHHHHT--TCCEEEE
T ss_pred hHhhhc-------------HHHHHHHHHHHHHHh-ccCCCCc--CCcchhhhhhccccCCCccccHHHHHH--HHHHHHH
Confidence 997532 223455666665322 2222321 12233357889996433 4458887 8887777
Q ss_pred --CCCH-HHHHHHHHHhcc
Q 012383 297 --APTR-EDRIGVCKGIFR 312 (465)
Q Consensus 297 --~P~~-e~R~~Il~~~l~ 312 (465)
.|+. +++.+|++.+..
T Consensus 179 v~~p~~~ee~~~IL~~~~~ 197 (500)
T 3nbx_X 179 LDKVQDKANFRSMLTSQQD 197 (500)
T ss_dssp CCSCCCHHHHHHHHTCCCC
T ss_pred HHHhhhhhhHHHHHhcccc
Confidence 6665 778899887653
No 82
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.19 E-value=7.3e-12 Score=110.89 Aligned_cols=90 Identities=12% Similarity=0.007 Sum_probs=65.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCC
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRM 228 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r 228 (465)
+..||||||||||||++|++++++.+ +++.++++.+...+ ....|..+ ..++|||||||.+...
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~-------~~~~~~~a-------~~~~l~lDei~~l~~~- 90 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM-------PMELLQKA-------EGGVLYVGDIAQYSRN- 90 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-------HHHHHHHT-------TTSEEEEEECTTCCHH-
T ss_pred CCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-------hhhHHHhC-------CCCeEEEeChHHCCHH-
Confidence 46799999999999999999999988 88889888765332 34555544 4679999999976432
Q ss_pred CCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC
Q 012383 229 GGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF 278 (465)
Q Consensus 229 ~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~ 278 (465)
.+..|+.+++ . ....++.+|+|||+.
T Consensus 91 ------------~q~~Ll~~l~--------~----~~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 91 ------------IQTGITFIIG--------K----AERCRVRVIASCSYA 116 (143)
T ss_dssp ------------HHHHHHHHHH--------H----HTTTTCEEEEEEEEC
T ss_pred ------------HHHHHHHHHH--------h----CCCCCEEEEEecCCC
Confidence 2234555555 1 113567899999975
No 83
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.16 E-value=9.1e-11 Score=116.92 Aligned_cols=158 Identities=15% Similarity=0.193 Sum_probs=91.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEeccccccc-----CCCC--------ChHHHHHHHHHHHHHHHHhC
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELES-----GNAG--------EPAKLIRQRYREAADIIKKG 211 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~s~L~s-----~~~G--------e~~k~Ir~~F~~A~~~i~~~ 211 (465)
.+..|||+||||||||++|++|++.. +.+|+.++++.+-. ...| ... .....|..|
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lfg~~~g~~tg~~~-~~~g~~~~a------- 95 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELFGHEKGAFTGADK-RREGRFVEA------- 95 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHTCCCSSCCC---C-CCCCHHHHH-------
T ss_pred CCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhcCccccccCchhh-hhcCHHHhc-------
Confidence 45789999999999999999999975 56888888776532 1111 110 112234444
Q ss_pred CceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC-------CCCChh
Q 012383 212 KMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF-------STLYAP 284 (465)
Q Consensus 212 ~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~-------~~LD~A 284 (465)
..++|||||||.+.. ..+..|+.+++......+.+. .....++.||+|||.. ..++++
T Consensus 96 ~~g~L~LDEi~~l~~-------------~~q~~Ll~~l~~~~~~~~g~~--~~~~~~~riI~atn~~l~~~v~~g~fr~~ 160 (304)
T 1ojl_A 96 DGGTLFLDEIGDISP-------------LMQVRLLRAIQEREVQRVGSN--QTISVDVRLIAATHRDLAEEVSAGRFRQD 160 (304)
T ss_dssp TTSEEEEESCTTCCH-------------HHHHHHHHHHHSSBCCBTTBC--CCCBCCCEEEEEESSCHHHHHHHTSSCHH
T ss_pred CCCEEEEeccccCCH-------------HHHHHHHHHHhcCEeeecCCc--ccccCCeEEEEecCccHHHHHHhCCcHHH
Confidence 357999999987642 133456666663321111111 1123568999999986 235555
Q ss_pred hhcCCCceEE-EeCCCHHHHH----HHHHHhcc---------CCCCChhHHHHHhcC-CCc
Q 012383 285 LIRDGRMEKF-YWAPTREDRI----GVCKGIFR---------NDNVADDDIVKLVDT-FPG 330 (465)
Q Consensus 285 LlR~GRfd~~-i~~P~~e~R~----~Il~~~l~---------~~~v~~~~la~lt~g-fsg 330 (465)
|.. ||... +.+|...+|. .+++.++. ...++.+.+..+... |+|
T Consensus 161 L~~--Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~~wpG 219 (304)
T 1ojl_A 161 LYY--RLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYDWPG 219 (304)
T ss_dssp HHH--HHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHCCCSS
T ss_pred HHh--hcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcCCCCC
Confidence 554 55433 4477655553 34444332 124556656555443 344
No 84
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.11 E-value=5e-10 Score=112.01 Aligned_cols=140 Identities=8% Similarity=-0.035 Sum_probs=93.9
Q ss_pred HHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHh------CCceEEecccccccCCCCChHHHHHHHHHHHHHHH
Q 012383 135 HITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKM------GINPIMMSAGELESGNAGEPAKLIRQRYREAADII 208 (465)
Q Consensus 135 ~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~el------g~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i 208 (465)
...+++++... +..+|||||||||||++|+++|+.+ ...++.++++. . .-+...+|++.+.+...-
T Consensus 7 ~~L~~~i~~~~---~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~---~--~~~id~ir~li~~~~~~p 78 (305)
T 2gno_A 7 ETLKRIIEKSE---GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG---E--NIGIDDIRTIKDFLNYSP 78 (305)
T ss_dssp HHHHHHHHTCS---SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS---S--CBCHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHCCC---CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc---C--CCCHHHHHHHHHHHhhcc
Confidence 34445555433 4589999999999999999999974 33566666531 1 123445778777761000
Q ss_pred HhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhhcC
Q 012383 209 KKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRD 288 (465)
Q Consensus 209 ~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~ 288 (465)
..+...|+||||+|.+... ....|+..++ ++.+.+.+|.+||.++.|.++++.
T Consensus 79 ~~~~~kvviIdead~lt~~-------------a~naLLk~LE-------------ep~~~t~fIl~t~~~~kl~~tI~S- 131 (305)
T 2gno_A 79 ELYTRKYVIVHDCERMTQQ-------------AANAFLKALE-------------EPPEYAVIVLNTRRWHYLLPTIKS- 131 (305)
T ss_dssp SSSSSEEEEETTGGGBCHH-------------HHHHTHHHHH-------------SCCTTEEEEEEESCGGGSCHHHHT-
T ss_pred ccCCceEEEeccHHHhCHH-------------HHHHHHHHHh-------------CCCCCeEEEEEECChHhChHHHHc-
Confidence 0234579999999986321 1234555555 445677888899999999999987
Q ss_pred CCceEEEeCCCHHHHHHHHHHhc
Q 012383 289 GRMEKFYWAPTREDRIGVCKGIF 311 (465)
Q Consensus 289 GRfd~~i~~P~~e~R~~Il~~~l 311 (465)
| -..+..|+.++..++++..+
T Consensus 132 -R-~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 132 -R-VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp -T-SEEEECCCCHHHHHHHHHHH
T ss_pred -e-eEeCCCCCHHHHHHHHHHHh
Confidence 4 33333888888888887776
No 85
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.08 E-value=3.9e-10 Score=104.13 Aligned_cols=107 Identities=17% Similarity=0.158 Sum_probs=61.8
Q ss_pred ccccccccccccCCCCCchhHHHHHHHHHHHhhhhCC-CCCCCeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEeccc
Q 012383 108 QGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLP-NIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG 183 (465)
Q Consensus 108 ~~~r~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~-~~~~p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~s 183 (465)
..++.++|++..... + ..+.+...++.++... ....|.+++||||||||||++|+++++++ +.+++.++.+
T Consensus 17 ~~~~~~~f~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~ 91 (202)
T 2w58_A 17 REILRASLSDVDLND---D--GRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVP 91 (202)
T ss_dssp GGGGCCCTTSSCCSS---H--HHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred HHHHcCCHhhccCCC---h--hHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhH
Confidence 344556777765431 1 1122334455555422 22245899999999999999999999987 6778778777
Q ss_pred ccccCCCCCh-HHHHHHHHHHHHHHHHhCCceEEEeccccccc
Q 012383 184 ELESGNAGEP-AKLIRQRYREAADIIKKGKMCCLMINDLDAGA 225 (465)
Q Consensus 184 ~L~s~~~Ge~-~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~ 225 (465)
++........ ...+...+... . .+.+|||||++...
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~----~--~~~~lilDei~~~~ 128 (202)
T 2w58_A 92 ELFRELKHSLQDQTMNEKLDYI----K--KVPVLMLDDLGAEA 128 (202)
T ss_dssp HHHHHHHHC---CCCHHHHHHH----H--HSSEEEEEEECCC-
T ss_pred HHHHHHHHHhccchHHHHHHHh----c--CCCEEEEcCCCCCc
Confidence 6543211000 00011122221 2 24699999997653
No 86
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.07 E-value=7.3e-11 Score=140.28 Aligned_cols=115 Identities=13% Similarity=0.168 Sum_probs=83.4
Q ss_pred CCeE--EEEEcCCCCcHHHHHHHHHHHhC---CceEEecccccc------------cCCCCC----hHHHHHHHHHHHHH
Q 012383 148 VPLI--LGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGELE------------SGNAGE----PAKLIRQRYREAAD 206 (465)
Q Consensus 148 ~p~g--lLL~GPPGtGKT~LAraIA~elg---~~~i~vs~s~L~------------s~~~Ge----~~k~Ir~~F~~A~~ 206 (465)
+|+| +|||||||||||+||++++.+.. -+-+.++..++. ++|+++ +++.++.+|..|
T Consensus 1079 ~p~g~~~l~~G~~g~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~a-- 1156 (1706)
T 3cmw_A 1079 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALA-- 1156 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH--
T ss_pred CCCCCEEEEEcCCCCChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHH--
Confidence 5566 99999999999999999999864 444455544433 778888 899999999988
Q ss_pred HHHhCCceEEEecccccccCCCC---C--CcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC
Q 012383 207 IIKKGKMCCLMINDLDAGAGRMG---G--TTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS 279 (465)
Q Consensus 207 ~i~~~~p~ILfIDEIDai~~~r~---~--~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~ 279 (465)
+...||+||+|++|++++.++ . ..+..+..+.++++|..+ ++. ....+|.|| +||+..
T Consensus 1157 --r~~~~~~i~~d~~~al~~~~~~~g~~~~~~~~~~~r~~~q~l~~~---------~~~---~~~~~v~v~-~~n~~~ 1219 (1706)
T 3cmw_A 1157 --RSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKL---------AGN---LKQSNTLLI-FINQIR 1219 (1706)
T ss_dssp --HHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHH---------HHH---HHHTTCEEE-EEECEE
T ss_pred --HhcCCeEEEeCchHhcCcccccccccccccccHHHHHHHHHHHHH---------Hhh---hccCCeEEE-Eecccc
Confidence 899999999999999998842 1 112234445566555322 233 445777777 888753
No 87
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.99 E-value=4.2e-10 Score=113.78 Aligned_cols=124 Identities=16% Similarity=0.126 Sum_probs=72.6
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCc--eEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEeccc
Q 012383 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGIN--PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDL 221 (465)
Q Consensus 144 ~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~--~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEI 221 (465)
.|+.+...++|+||||||||+||.++|.+.|.. |+.....+..+.+..+.+..++.+++.. .... +||||+|
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l----~~~~--LLVIDsI 191 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAM----LQHR--VIVIDSL 191 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHH----HHCS--EEEEECC
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHH----hhCC--EEEEecc
Confidence 455556778999999999999999999876655 4444224444444445555555454443 4444 9999999
Q ss_pred ccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhh
Q 012383 222 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLI 286 (465)
Q Consensus 222 Dai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALl 286 (465)
+.+.....+........+.+.+.|..|.. . ....++.+|++|| +...|+++.
T Consensus 192 ~aL~~~~~~~s~~G~v~~~lrqlL~~L~~---------~---~k~~gvtVIlttn-p~s~deal~ 243 (331)
T 2vhj_A 192 KNVIGAAGGNTTSGGISRGAFDLLSDIGA---------M---AASRGCVVIASLN-PTSNDDKIV 243 (331)
T ss_dssp TTTC-----------CCHHHHHHHHHHHH---------H---HHHHTCEEEEECC-CSSCSSSHH
T ss_pred cccccccccccccchHHHHHHHHHHHHHH---------H---HhhCCCEEEEEeC-CcccchhHH
Confidence 99865543211111122334444433322 2 1224577888888 667777753
No 88
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.98 E-value=4.1e-10 Score=112.57 Aligned_cols=103 Identities=12% Similarity=0.127 Sum_probs=60.0
Q ss_pred cccccccccCCCCCchhHHHHHHHHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhC----CceEEecccccc
Q 012383 111 RTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMG----INPIMMSAGELE 186 (465)
Q Consensus 111 r~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg----~~~i~vs~s~L~ 186 (465)
+.++|++...... ....+...++.|+....-..+.+++||||||||||+||+++|+++. .+++.++.+++.
T Consensus 119 ~~~tfd~f~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~ 193 (308)
T 2qgz_A 119 RHIHLSDIDVNNA-----SRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFA 193 (308)
T ss_dssp GSCCGGGSCCCSH-----HHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHH
T ss_pred HhCCHhhCcCCCh-----HHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHH
Confidence 4456666554311 1123444566666533222368999999999999999999998754 778778877664
Q ss_pred cCCCCCh-HHHHHHHHHHHHHHHHhCCceEEEecccccc
Q 012383 187 SGNAGEP-AKLIRQRYREAADIIKKGKMCCLMINDLDAG 224 (465)
Q Consensus 187 s~~~Ge~-~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai 224 (465)
....+.. ...+...+.. -....|||||||+..
T Consensus 194 ~~l~~~~~~~~~~~~~~~------~~~~~lLiiDdig~~ 226 (308)
T 2qgz_A 194 IDVKNAISNGSVKEEIDA------VKNVPVLILDDIGAE 226 (308)
T ss_dssp HHHHCCCC----CCTTHH------HHTSSEEEEETCCC-
T ss_pred HHHHHHhccchHHHHHHH------hcCCCEEEEcCCCCC
Confidence 3221110 0001111111 123569999999654
No 89
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.86 E-value=1e-08 Score=103.78 Aligned_cols=157 Identities=10% Similarity=0.110 Sum_probs=89.4
Q ss_pred CCeEEEE--EcCCCCcHHHHHHHHHHHh---------CCceEEeccccccc------C----------CCCChHHHHHHH
Q 012383 148 VPLILGI--WGGKGQGKSFQCELVFAKM---------GINPIMMSAGELES------G----------NAGEPAKLIRQR 200 (465)
Q Consensus 148 ~p~glLL--~GPPGtGKT~LAraIA~el---------g~~~i~vs~s~L~s------~----------~~Ge~~k~Ir~~ 200 (465)
.+..++| +||||+|||++++.+++++ +..++.+++....+ . ..|.+.. .+
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~---~~ 125 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPAL---DI 125 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHH---HH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHH---HH
Confidence 4678999 9999999999999999886 45667776532110 0 0121111 12
Q ss_pred HHHHHHHHH-hCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCC--CCceEEEEeCC
Q 012383 201 YREAADIIK-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEEN--PRVPIIVTGND 277 (465)
Q Consensus 201 F~~A~~~i~-~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~--~~V~VI~TTN~ 277 (465)
+....+.+. ...|.||+|||+|.+...+.. . ...+. .|+.++. .. .... .++.+|+|||.
T Consensus 126 ~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~--~----~~~l~-~l~~~~~--------~~--~~~~~~~~v~lI~~~~~ 188 (412)
T 1w5s_A 126 LKALVDNLYVENHYLLVILDEFQSMLSSPRI--A----AEDLY-TLLRVHE--------EI--PSRDGVNRIGFLLVASD 188 (412)
T ss_dssp HHHHHHHHHHHTCEEEEEEESTHHHHSCTTS--C----HHHHH-HHHTHHH--------HS--CCTTSCCBEEEEEEEEE
T ss_pred HHHHHHHHHhcCCeEEEEEeCHHHHhhccCc--c----hHHHH-HHHHHHH--------hc--ccCCCCceEEEEEEecc
Confidence 222222223 467999999999988653210 0 11222 2223333 01 0112 57889999987
Q ss_pred CC---CCC---hhhhcCCCceEEEe--CCCHHHHHHHHHHhcc----CCCCChh---HHHHHhc
Q 012383 278 FS---TLY---APLIRDGRMEKFYW--APTREDRIGVCKGIFR----NDNVADD---DIVKLVD 326 (465)
Q Consensus 278 ~~---~LD---~ALlR~GRfd~~i~--~P~~e~R~~Il~~~l~----~~~v~~~---~la~lt~ 326 (465)
++ .++ +.+.++ +...+. .++.++..+|+...+. ...++.+ .+.+.+.
T Consensus 189 ~~~~~~l~~~~~~~~~~--~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~ 250 (412)
T 1w5s_A 189 VRALSYMREKIPQVESQ--IGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYG 250 (412)
T ss_dssp THHHHHHHHHCHHHHTT--CSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHC
T ss_pred ccHHHHHhhhcchhhhh--cCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHH
Confidence 75 334 555553 333355 7789999999866543 2245554 4455555
No 90
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.80 E-value=5.3e-09 Score=93.67 Aligned_cols=58 Identities=19% Similarity=0.277 Sum_probs=46.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccc
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAG 224 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai 224 (465)
....++|+||+|+|||+|+++++..+ |...+.+++.++... + ...+|.||+|||++.+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~----~~~~~~lLilDE~~~~ 95 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------D----AAFEAEYLAVDQVEKL 95 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------G----GGGGCSEEEEESTTCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------H----HHhCCCEEEEeCcccc
Confidence 45789999999999999999999987 777888888776643 1 1235889999999764
No 91
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.78 E-value=1.1e-08 Score=105.47 Aligned_cols=120 Identities=11% Similarity=0.084 Sum_probs=77.7
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEeccccc
Q 012383 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDA 223 (465)
Q Consensus 144 ~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDa 223 (465)
.+++++..++|+||||+|||+++++++..++..++.+..+. .. . .|... ...+..++|+||++.
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~-------~~---~--~~~lg----~~~q~~~~l~dd~~~ 227 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPL-------DR---L--NFELG----VAIDQFLVVFEDVKG 227 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCT-------TT---H--HHHHG----GGTTCSCEEETTCCC
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccc-------hh---H--HHHHH----HhcchhHHHHHHHHH
Confidence 36777889999999999999999999998876655433221 10 0 11111 233456789999999
Q ss_pred ccC-CCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCChhhhcCCCceEEEeCCC
Q 012383 224 GAG-RMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 299 (465)
Q Consensus 224 i~~-~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ALlR~GRfd~~i~~P~ 299 (465)
+.. .+.-....... ....+.+.+| +.+.|+++||+++.+ ++++||||++..++.+.
T Consensus 228 ~~~~~r~l~~~~~~~---~~~~l~~~ld----------------G~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 228 TGGESRDLPSGQGIN---NLDNLRDYLD----------------GSVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp STTTTTTCCCCSHHH---HHHTTHHHHH----------------CSSCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred HHHHHhhccccCcch---HHHHHHHHhc----------------CCCeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 875 33211111000 0112222333 236789999999999 78999999999888444
No 92
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.77 E-value=1.2e-08 Score=97.13 Aligned_cols=128 Identities=16% Similarity=0.104 Sum_probs=70.2
Q ss_pred HHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCc
Q 012383 134 VHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 213 (465)
Q Consensus 134 ~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p 213 (465)
+...+.|+. +++...++|||||||||||++|.++|+.+.-.++....+. +.+ .+.. ....
T Consensus 45 ~~~l~~~~~--~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~--s~f----------~l~~------l~~~ 104 (212)
T 1tue_A 45 LGALKSFLK--GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNST--SHF----------WLEP------LTDT 104 (212)
T ss_dssp HHHHHHHHH--TCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSS--SCG----------GGGG------GTTC
T ss_pred HHHHHHHHh--cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEecc--chh----------hhcc------cCCC
Confidence 444556665 3433468999999999999999999999864433211110 000 0111 1224
Q ss_pred eEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCcccc-CCCCCceEEEEeCCC---CCCChhhhcCC
Q 012383 214 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNK-EENPRVPIIVTGNDF---STLYAPLIRDG 289 (465)
Q Consensus 214 ~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~-~~~~~V~VI~TTN~~---~~LD~ALlR~G 289 (465)
.||+|||+|.- ..+.+...+.+++|.- .+.++-.+.. ......|+|+|||.. +...+.|..
T Consensus 105 kIiiLDEad~~------------~~~~~d~~lrn~ldG~-~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~S-- 169 (212)
T 1tue_A 105 KVAMLDDATTT------------CWTYFDTYMRNALDGN-PISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLES-- 169 (212)
T ss_dssp SSEEEEEECHH------------HHHHHHHHCHHHHHTC-CEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHT--
T ss_pred CEEEEECCCch------------hHHHHHHHHHHHhCCC-cccHHHhhcCccccCCCCEEEecCCCcccccchhhhhh--
Confidence 59999999731 1234445667777721 1111111111 112456999999983 333344543
Q ss_pred CceEEEe
Q 012383 290 RMEKFYW 296 (465)
Q Consensus 290 Rfd~~i~ 296 (465)
|+-.+-+
T Consensus 170 Ri~~f~F 176 (212)
T 1tue_A 170 RITVFEF 176 (212)
T ss_dssp SCEEEEC
T ss_pred hEEEEEc
Confidence 6665444
No 93
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.61 E-value=8.6e-08 Score=90.21 Aligned_cols=122 Identities=14% Similarity=0.140 Sum_probs=75.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHH--------hC-CceEEecccccccCCC-------------CC--hHHHHHHHHHH
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAK--------MG-INPIMMSAGELESGNA-------------GE--PAKLIRQRYRE 203 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~e--------lg-~~~i~vs~s~L~s~~~-------------Ge--~~k~Ir~~F~~ 203 (465)
.+...|++|+||+|||++|.+.+.. .| .+++..+..+|.-.+. ++ ....+...+..
T Consensus 4 ~~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~ 83 (199)
T 2r2a_A 4 MAEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKK 83 (199)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTS
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhc
Confidence 3568899999999999999886443 34 5555555554432221 11 11122221111
Q ss_pred HHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCCCh
Q 012383 204 AADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYA 283 (465)
Q Consensus 204 A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~LD~ 283 (465)
..+..+||||||++.+.+.+..... ..++ |.++.. .....+-||.+|+.++.|+.
T Consensus 84 -----~~~~~~vliIDEAq~l~~~~~~~~e---~~rl----l~~l~~-------------~r~~~~~iil~tq~~~~l~~ 138 (199)
T 2r2a_A 84 -----PENIGSIVIVDEAQDVWPARSAGSK---IPEN----VQWLNT-------------HRHQGIDIFVLTQGPKLLDQ 138 (199)
T ss_dssp -----GGGTTCEEEETTGGGTSBCCCTTCC---CCHH----HHGGGG-------------TTTTTCEEEEEESCGGGBCH
T ss_pred -----cccCceEEEEEChhhhccCccccch---hHHH----HHHHHh-------------cCcCCeEEEEECCCHHHHhH
Confidence 2456899999999999765531111 1122 222211 23356688999999999999
Q ss_pred hhhcCCCceEEEe
Q 012383 284 PLIRDGRMEKFYW 296 (465)
Q Consensus 284 ALlR~GRfd~~i~ 296 (465)
++++ |++..+.
T Consensus 139 ~lr~--ri~~~~~ 149 (199)
T 2r2a_A 139 NLRT--LVRKHYH 149 (199)
T ss_dssp HHHT--TEEEEEE
T ss_pred HHHH--HhheEEE
Confidence 9775 9998888
No 94
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.54 E-value=1.4e-07 Score=113.81 Aligned_cols=102 Identities=17% Similarity=0.271 Sum_probs=68.5
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEecccccc----cCCCC------------ChHHHHHHHHHHHH
Q 012383 145 NIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELE----SGNAG------------EPAKLIRQRYREAA 205 (465)
Q Consensus 145 ~~~~p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~s~L~----s~~~G------------e~~k~Ir~~F~~A~ 205 (465)
|++++++++||||||||||+||.+++.+. |.....++..+.. ....| ..++.++.++..+
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lv- 1501 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALA- 1501 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHH-
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHH-
Confidence 68899999999999999999999998874 4455555544321 11122 4456666666555
Q ss_pred HHHHhCCceEEEecccccccCCC---C--CCcccchhhHHHHHHHHHhhc
Q 012383 206 DIIKKGKMCCLMINDLDAGAGRM---G--GTTQYTVNNQMVNATLMNIAD 250 (465)
Q Consensus 206 ~~i~~~~p~ILfIDEIDai~~~r---~--~~~~~~v~~~~v~~~Ll~llD 250 (465)
+..+|++|||||++++.+.. + +........+.+.++|.+|..
T Consensus 1502 ---r~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~ 1548 (2050)
T 3cmu_A 1502 ---RSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAG 1548 (2050)
T ss_dssp ---HHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHH
T ss_pred ---hcCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHH
Confidence 88899999999999988742 1 111222234556666665544
No 95
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.50 E-value=8.3e-08 Score=104.08 Aligned_cols=26 Identities=19% Similarity=0.183 Sum_probs=23.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhCC
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKMGI 175 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~elg~ 175 (465)
..++|+||||||||++|++||..+..
T Consensus 61 ~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 61 RHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred CEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 58999999999999999999998754
No 96
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.43 E-value=2.2e-06 Score=84.17 Aligned_cols=157 Identities=20% Similarity=0.249 Sum_probs=85.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccc------------c---CCCCC---------------------h
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE------------S---GNAGE---------------------P 193 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~------------s---~~~Ge---------------------~ 193 (465)
..++|+||+|+|||+|++.++++.+ .+.+++.... . ...+. .
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 109 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPR 109 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGG
T ss_pred CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccc
Confidence 5899999999999999999999986 4444432211 0 00000 0
Q ss_pred HHHHHHHHHHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEE
Q 012383 194 AKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIV 273 (465)
Q Consensus 194 ~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~ 273 (465)
...+..+++...+......|.+|+|||++.+..... . ....+...|..+++ . ..++.+|+
T Consensus 110 ~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~--~----~~~~~~~~L~~~~~-------------~-~~~~~~il 169 (350)
T 2qen_A 110 KLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGS--R----GGKELLALFAYAYD-------------S-LPNLKIIL 169 (350)
T ss_dssp GCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTT--T----TTHHHHHHHHHHHH-------------H-CTTEEEEE
T ss_pred cchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCc--c----chhhHHHHHHHHHH-------------h-cCCeEEEE
Confidence 012233333332222333499999999998764210 0 01112223333333 1 14667788
Q ss_pred EeCCCC---------CCChhhhcCCCceEEEe--CCCHHHHHHHHHHhccCCC--CChh---HHHHHhcCCCc
Q 012383 274 TGNDFS---------TLYAPLIRDGRMEKFYW--APTREDRIGVCKGIFRNDN--VADD---DIVKLVDTFPG 330 (465)
Q Consensus 274 TTN~~~---------~LD~ALlR~GRfd~~i~--~P~~e~R~~Il~~~l~~~~--v~~~---~la~lt~gfsg 330 (465)
|+.... ....++. ||....+. ..+.++-.+++...+...+ ++.+ .+...+.|++.
T Consensus 170 ~g~~~~~l~~~l~~~~~~~~l~--~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~tgG~P~ 240 (350)
T 2qen_A 170 TGSEVGLLHDFLKITDYESPLY--GRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDGIPG 240 (350)
T ss_dssp EESSHHHHHHHHCTTCTTSTTT--TCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHTTCHH
T ss_pred ECCcHHHHHHHHhhcCCCCccc--cCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHH
Confidence 775432 1122232 45554555 7788888888887765433 4444 45556666664
No 97
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.41 E-value=9e-07 Score=109.65 Aligned_cols=140 Identities=10% Similarity=0.084 Sum_probs=92.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCC
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRM 228 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r 228 (465)
.+|+++.||||||||.+++++|+.+|.+++.+++++-.+ ...+..+|..+ . ...+.++||||+.+...
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld------~~~lg~~~~g~----~-~~Gaw~~~DE~nr~~~e- 712 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD------YQVLSRLLVGI----T-QIGAWGCFDEFNRLDEK- 712 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC------HHHHHHHHHHH----H-HHTCEEEEETTTSSCHH-
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC------hhHhhHHHHHH----H-hcCCEeeehhhhhcChH-
Confidence 468999999999999999999999999999999886552 34456667665 2 22489999999865332
Q ss_pred CCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeC----CCCCCChhhhcCCCceEEEe-CCCHHHH
Q 012383 229 GGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGN----DFSTLYAPLIRDGRMEKFYW-APTREDR 303 (465)
Q Consensus 229 ~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN----~~~~LD~ALlR~GRfd~~i~-~P~~e~R 303 (465)
.-.+..+.+...+-.+.+....+.+.|.. ..-.+...|++|.| ....|+++|.+ ||-.+.. .|+.+..
T Consensus 713 ----vLs~l~~~l~~i~~al~~~~~~i~~~g~~-i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~Fr~v~m~~Pd~~~i 785 (2695)
T 4akg_A 713 ----VLSAVSANIQQIQNGLQVGKSHITLLEEE-TPLSPHTAVFITLNPGYNGRSELPENLKK--SFREFSMKSPQSGTI 785 (2695)
T ss_dssp ----HHHHHHHHHHHHHHHHHHTCSEEECSSSE-EECCTTCEEEEEECCCSSSSCCCCHHHHT--TEEEEECCCCCHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHcCCcEEeeCCcE-EecCCCceEEEEeCCCccCcccccHHHHh--heEEEEeeCCCHHHH
Confidence 11222222222222223333333333321 12245667899999 66789999988 5533333 8999988
Q ss_pred HHHH
Q 012383 304 IGVC 307 (465)
Q Consensus 304 ~~Il 307 (465)
.+|+
T Consensus 786 ~ei~ 789 (2695)
T 4akg_A 786 AEMI 789 (2695)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8884
No 98
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.40 E-value=8.8e-06 Score=79.89 Aligned_cols=35 Identities=17% Similarity=0.185 Sum_probs=30.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccc
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE 184 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~ 184 (465)
..++|+||+|+|||+|++.++++++..++.+++..
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~ 65 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRK 65 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchh
Confidence 48999999999999999999999877777776543
No 99
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.37 E-value=2.2e-07 Score=115.98 Aligned_cols=142 Identities=11% Similarity=0.184 Sum_probs=90.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHh-CCceEEecccccccCCCCChHHHHHHHHHHHHHHHH------------hCCceE
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKM-GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK------------KGKMCC 215 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~el-g~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~------------~~~p~I 215 (465)
.+.|||+||||||||.++......+ +.+++.++.+.-. +...+...+..-.+..+ .++..|
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~T------ta~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~V 1377 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSAT------TPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLV 1377 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTC------CHHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCC------CHHHHHHHHhhcceEEeccCCCcccCCCcCCceEE
Confidence 3579999999999998876554443 5556666665332 23444445542100000 134579
Q ss_pred EEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCcccc-----CCCCCceEEEEeCCC-----CCCChhh
Q 012383 216 LMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNK-----EENPRVPIIVTGNDF-----STLYAPL 285 (465)
Q Consensus 216 LfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~-----~~~~~V~VI~TTN~~-----~~LD~AL 285 (465)
||||||+.-.....| .+...++|.+++|+- |++.. ....++.+|+|+|.+ ..|+++|
T Consensus 1378 lFiDDiNmp~~D~yG-------tQ~~ielLrqlld~~------g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf 1444 (3245)
T 3vkg_A 1378 VFCDEINLPSTDKYG-------TQRVITFIRQMVEKG------GFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRF 1444 (3245)
T ss_dssp EEETTTTCCCCCTTS-------CCHHHHHHHHHHHHS------EEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHH
T ss_pred EEecccCCCCccccc-------cccHHHHHHHHHHcC------CeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHH
Confidence 999999853333221 244556777777732 22221 123677899999987 4699999
Q ss_pred hcCCCceEEEe-CCCHHHHHHHHHHhc
Q 012383 286 IRDGRMEKFYW-APTREDRIGVCKGIF 311 (465)
Q Consensus 286 lR~GRfd~~i~-~P~~e~R~~Il~~~l 311 (465)
+| ||-.+.. .|+.+....|+..++
T Consensus 1445 ~r--~F~vi~i~~ps~esL~~If~til 1469 (3245)
T 3vkg_A 1445 LR--HAPILLVDFPSTSSLTQIYGTFN 1469 (3245)
T ss_dssp HT--TCCEEECCCCCHHHHHHHHHHHH
T ss_pred Hh--hceEEEeCCCCHHHHHHHHHHHH
Confidence 99 7777655 999999999966543
No 100
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.33 E-value=1.6e-06 Score=85.28 Aligned_cols=41 Identities=10% Similarity=0.112 Sum_probs=30.6
Q ss_pred HHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCC
Q 012383 134 VHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI 175 (465)
Q Consensus 134 ~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~ 175 (465)
...++++++.. ..+..+|+||||||||||++|++||+.++.
T Consensus 90 ~~~l~~~l~~~-~~~~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 90 ASVFLGWATKK-FGKRNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp HHHHHHHHTTC-STTCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred HHHHHHHHhCC-CCCCcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 44456666531 122368999999999999999999998655
No 101
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.08 E-value=2.2e-05 Score=72.28 Aligned_cols=41 Identities=10% Similarity=0.054 Sum_probs=33.6
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccc
Q 012383 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE 184 (465)
Q Consensus 144 ~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~ 184 (465)
.|+++...++|+||||+|||++++.++...+...++++...
T Consensus 15 Ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 15 GGFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SSBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 36777788999999999999999999986676777766543
No 102
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.01 E-value=6.3e-06 Score=84.62 Aligned_cols=106 Identities=17% Similarity=0.191 Sum_probs=64.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhC---CceEEecccccccC-------------CCCChHHHHHHHHHHHHHHHHhCCc
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGELESG-------------NAGEPAKLIRQRYREAADIIKKGKM 213 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~elg---~~~i~vs~s~L~s~-------------~~Ge~~k~Ir~~F~~A~~~i~~~~p 213 (465)
..|||+|++|||||++|++|..... .+|+.++++.+-.. +.|.... -...|..| ..
T Consensus 161 ~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~~-~~g~~~~a-------~~ 232 (387)
T 1ny5_A 161 CPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSS-KEGFFELA-------DG 232 (387)
T ss_dssp SCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCSC-BCCHHHHT-------TT
T ss_pred CCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCCCCCCCcccc-cCCceeeC-------CC
Confidence 4579999999999999999988864 57999998765311 1111100 11234443 34
Q ss_pred eEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC
Q 012383 214 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF 278 (465)
Q Consensus 214 ~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~ 278 (465)
.+||||||+.+. ..++..|+.+++..+...+.+. .....++-||+|||+.
T Consensus 233 gtlfldei~~l~-------------~~~q~~Ll~~l~~~~~~~~g~~--~~~~~~~rii~at~~~ 282 (387)
T 1ny5_A 233 GTLFLDEIGELS-------------LEAQAKLLRVIESGKFYRLGGR--KEIEVNVRILAATNRN 282 (387)
T ss_dssp SEEEEESGGGCC-------------HHHHHHHHHHHHHSEECCBTCC--SBEECCCEEEEEESSC
T ss_pred cEEEEcChhhCC-------------HHHHHHHHHHHhcCcEEeCCCC--ceeeccEEEEEeCCCC
Confidence 799999998763 2334455566552221111111 1122467899999973
No 103
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.94 E-value=8.5e-05 Score=68.12 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=23.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCce
Q 012383 151 ILGIWGGKGQGKSFQCELVFAKMGINP 177 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~elg~~~ 177 (465)
.+.|.||+|+|||+|++.|+..+++.+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 478999999999999999999987544
No 104
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.94 E-value=1.2e-05 Score=97.10 Aligned_cols=82 Identities=16% Similarity=0.193 Sum_probs=62.8
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEecccccccCC----CC--------ChHHHHHHHHHHHHHHHH
Q 012383 145 NIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGN----AG--------EPAKLIRQRYREAADIIK 209 (465)
Q Consensus 145 ~~~~p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~s~L~s~~----~G--------e~~k~Ir~~F~~A~~~i~ 209 (465)
|+.+...++|+|+||+|||+||..+|..+ +.++++++..+....+ .| .++..+..++..+..+.+
T Consensus 728 Gl~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~~ 807 (2050)
T 3cmu_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHhh
Confidence 68888999999999999999999999886 3468888877654432 23 122346667777655556
Q ss_pred hCCceEEEecccccccC
Q 012383 210 KGKMCCLMINDLDAGAG 226 (465)
Q Consensus 210 ~~~p~ILfIDEIDai~~ 226 (465)
...|++||||.|+.+..
T Consensus 808 ~~~~~LVIIDsLq~i~~ 824 (2050)
T 3cmu_A 808 SGAVDVIVVDSVAALTP 824 (2050)
T ss_dssp HTCCSEEEESCGGGCCC
T ss_pred ccCCCEEEEcchhhhcc
Confidence 68899999999999976
No 105
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.90 E-value=3.1e-05 Score=79.09 Aligned_cols=83 Identities=16% Similarity=0.174 Sum_probs=54.7
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEecccccccC----CCCC--------hHHHHHHHHHHHHHHH
Q 012383 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG----NAGE--------PAKLIRQRYREAADII 208 (465)
Q Consensus 144 ~~~~~p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~s~L~s~----~~Ge--------~~k~Ir~~F~~A~~~i 208 (465)
.|+++...++|+||||+|||+|+..++..+ +-.+++++..+.... ..|- ....+.+.+..+..++
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~ 135 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELV 135 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHh
Confidence 467777899999999999999999999874 556666665542210 0000 0011223334443444
Q ss_pred HhCCceEEEecccccccC
Q 012383 209 KKGKMCCLMINDLDAGAG 226 (465)
Q Consensus 209 ~~~~p~ILfIDEIDai~~ 226 (465)
+...+.+++||.+-.+.+
T Consensus 136 ~~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 136 RSGVVDLIVVDSVAALVP 153 (356)
T ss_dssp HTSCCSEEEEECTTTCCC
T ss_pred hhcCCCeEEehHhhhhcC
Confidence 568899999999988865
No 106
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.89 E-value=2e-05 Score=70.45 Aligned_cols=35 Identities=14% Similarity=0.104 Sum_probs=30.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHhCCceEEeccc
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 183 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s 183 (465)
|+.|+|.|+||+|||++++++++.++.+++.++..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D 37 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVD 37 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccc
Confidence 56799999999999999999999999888875543
No 107
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=97.84 E-value=3.2e-05 Score=78.86 Aligned_cols=105 Identities=17% Similarity=0.243 Sum_probs=63.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhCCc--eEEecccccccCC-------------CCChHHHHHHHHHHHHHHHHhCCce
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKMGIN--PIMMSAGELESGN-------------AGEPAKLIRQRYREAADIIKKGKMC 214 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~elg~~--~i~vs~s~L~s~~-------------~Ge~~k~Ir~~F~~A~~~i~~~~p~ 214 (465)
..+|++|++||||+.+|+++....+.. |+.++++.+-... -|... .-...|..| ...
T Consensus 153 ~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~~g~~tga~~-~~~g~~~~a-------~~g 224 (368)
T 3dzd_A 153 APVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEKGAFTGALT-RKKGKLELA-------DQG 224 (368)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEECSCSSSSCCC-CEECHHHHT-------TTS
T ss_pred hhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCccccccCCccc-ccCChHhhc-------CCC
Confidence 459999999999999999999887653 8889988653221 11000 001223333 346
Q ss_pred EEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCC
Q 012383 215 CLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND 277 (465)
Q Consensus 215 ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~ 277 (465)
.||||||+.+. ..++..|+.+++..+...+.+. ....-++-+|+|||+
T Consensus 225 tlfldei~~l~-------------~~~Q~~Ll~~l~~~~~~~~g~~--~~~~~~~rii~at~~ 272 (368)
T 3dzd_A 225 TLFLDEVGELD-------------QRVQAKLLRVLETGSFTRLGGN--QKIEVDIRVISATNK 272 (368)
T ss_dssp EEEEETGGGSC-------------HHHHHHHHHHHHHSEECCBTCC--CBEECCCEEEEEESS
T ss_pred eEEecChhhCC-------------HHHHHHHHHHHHhCCcccCCCC--cceeeeeEEEEecCC
Confidence 89999998763 2344556666652221111111 011246779999995
No 108
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.83 E-value=3.6e-05 Score=78.19 Aligned_cols=83 Identities=16% Similarity=0.172 Sum_probs=53.8
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEecccccccC----CCCChH--------HHHHHHHHHHHHHH
Q 012383 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG----NAGEPA--------KLIRQRYREAADII 208 (465)
Q Consensus 144 ~~~~~p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~s~L~s~----~~Ge~~--------k~Ir~~F~~A~~~i 208 (465)
.|+++...++|+||||+|||+||..++... |...++++...-.+. ..|-.. ..+.+.+..+..++
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~ 135 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLV 135 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHH
Confidence 367777889999999999999999988763 556666665432211 111100 01223334443344
Q ss_pred HhCCceEEEecccccccC
Q 012383 209 KKGKMCCLMINDLDAGAG 226 (465)
Q Consensus 209 ~~~~p~ILfIDEIDai~~ 226 (465)
+...|.+|+||++.++..
T Consensus 136 ~~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 136 RSGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTTCCSEEEEECGGGCCC
T ss_pred hcCCCCEEEEcChHhhcc
Confidence 577899999999998874
No 109
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=97.82 E-value=6.7e-06 Score=86.96 Aligned_cols=124 Identities=15% Similarity=0.064 Sum_probs=68.4
Q ss_pred EEEEEcCCCCcHHHHHHHH-HHHhCCceEEecc--c---ccccCCCCChH-HHHHHHHHHHHHHHHhCCceEEEeccccc
Q 012383 151 ILGIWGGKGQGKSFQCELV-FAKMGINPIMMSA--G---ELESGNAGEPA-KLIRQRYREAADIIKKGKMCCLMINDLDA 223 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraI-A~elg~~~i~vs~--s---~L~s~~~Ge~~-k~Ir~~F~~A~~~i~~~~p~ILfIDEIDa 223 (465)
.|||.|+||| ||++|+++ ++-+....+ +++ + .|.....+.+. ..-...+..| .-.|||||||+.
T Consensus 241 hVLL~G~PGt-KS~Lar~i~~~i~pR~~f-t~g~~ss~~gLt~s~r~~tG~~~~~G~l~LA-------dgGvl~lDEIn~ 311 (506)
T 3f8t_A 241 HVLLAGYPVV-CSEILHHVLDHLAPRGVY-VDLRRTELTDLTAVLKEDRGWALRAGAAVLA-------DGGILAVDHLEG 311 (506)
T ss_dssp CEEEESCHHH-HHHHHHHHHHHTCSSEEE-EEGGGCCHHHHSEEEEESSSEEEEECHHHHT-------TTSEEEEECCTT
T ss_pred eEEEECCCCh-HHHHHHHHHHHhCCCeEE-ecCCCCCccCceEEEEcCCCcccCCCeeEEc-------CCCeeehHhhhh
Confidence 6999999999 99999999 665433222 211 0 11100000000 0000112222 346999999986
Q ss_pred ccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC-----------CCChhhhcCCCce
Q 012383 224 GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS-----------TLYAPLIRDGRME 292 (465)
Q Consensus 224 i~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~-----------~LD~ALlR~GRfd 292 (465)
+- .-.+..|++.|... .+.+.|. .-..++.||+|+|... .|+++++- |||
T Consensus 312 ~~-------------~~~qsaLlEaMEe~-~VtI~G~---~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLD--RFD 372 (506)
T 3f8t_A 312 AP-------------EPHRWALMEAMDKG-TVTVDGI---ALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLS--HFD 372 (506)
T ss_dssp CC-------------HHHHHHHHHHHHHS-EEEETTE---EEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHT--TCS
T ss_pred CC-------------HHHHHHHHHHHhCC-cEEECCE---EcCCCeEEEEEeCcccccCCCCCccccCCChHHhh--hee
Confidence 42 22334455555522 2233343 3346789999999875 78999996 999
Q ss_pred EEEe---CCCHHH
Q 012383 293 KFYW---APTRED 302 (465)
Q Consensus 293 ~~i~---~P~~e~ 302 (465)
.++. .|+.+.
T Consensus 373 Li~i~~d~pd~e~ 385 (506)
T 3f8t_A 373 LIAFLGVDPRPGE 385 (506)
T ss_dssp EEEETTC------
T ss_pred eEEEecCCCChhH
Confidence 8887 565554
No 110
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.81 E-value=6.9e-05 Score=76.70 Aligned_cols=83 Identities=16% Similarity=0.137 Sum_probs=54.2
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEecccccccCC----CCCh--------HHHHHHHHHHHHHHH
Q 012383 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGN----AGEP--------AKLIRQRYREAADII 208 (465)
Q Consensus 144 ~~~~~p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~s~L~s~~----~Ge~--------~k~Ir~~F~~A~~~i 208 (465)
.|+++...++|+||||+|||+||..+|... |..+++++...-.+.. .|.. ...+.+++..+..++
T Consensus 69 GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~ 148 (366)
T 1xp8_A 69 GGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLV 148 (366)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred CCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHH
Confidence 367777889999999999999999888763 5666776654322110 1110 001223333343444
Q ss_pred HhCCceEEEecccccccC
Q 012383 209 KKGKMCCLMINDLDAGAG 226 (465)
Q Consensus 209 ~~~~p~ILfIDEIDai~~ 226 (465)
+...+.+|+||.+..+..
T Consensus 149 ~~~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 149 RSGAIDVVVVDSVAALTP 166 (366)
T ss_dssp TTTCCSEEEEECTTTCCC
T ss_pred hcCCCCEEEEeChHHhcc
Confidence 567899999999999875
No 111
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.77 E-value=0.0001 Score=92.57 Aligned_cols=139 Identities=17% Similarity=0.149 Sum_probs=91.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccccccCCCC
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGRMG 229 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~r~ 229 (465)
.|..+.||+|||||.+++.+|+.+|.+++.+++++-. ..+.+-.+|.-+ +.. .+..+|||++.+-..
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~------d~~~~g~i~~G~---~~~--GaW~cfDEfNrl~~~-- 671 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGF------DLQAMSRIFVGL---CQC--GAWGCFDEFNRLEER-- 671 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCC------CHHHHHHHHHHH---HHH--TCEEEEETTTSSCHH--
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCC------CHHHHHHHHhhH---hhc--CcEEEehhhhcCCHH--
Confidence 5778999999999999999999999999999987544 234455556554 122 467899999765321
Q ss_pred CCcccchhhHHHHHHHHHhhcCCccccCC-CccccCCCCCceEEEEeC----CCCCCChhhhcCCCceEEEe-CCCHHHH
Q 012383 230 GTTQYTVNNQMVNATLMNIADNPTCVQLP-GMYNKEENPRVPIIVTGN----DFSTLYAPLIRDGRMEKFYW-APTREDR 303 (465)
Q Consensus 230 ~~~~~~v~~~~v~~~Ll~llD~~~~v~l~-g~~~~~~~~~V~VI~TTN----~~~~LD~ALlR~GRfd~~i~-~P~~e~R 303 (465)
.-.+..+.+......+.+....+.+. |. ...-.+..-|++|.| ....|+++|.. ||--+-. .|+.+..
T Consensus 672 ---vLSvv~~qi~~I~~a~~~~~~~~~~~~G~-~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lFr~v~m~~Pd~~~i 745 (3245)
T 3vkg_A 672 ---ILSAVSQQIQTIQVALKENSKEVELLGGK-NISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LFRSMAMIKPDREMI 745 (3245)
T ss_dssp ---HHHHHHHHHHHHHHHHHHTCSEECCC----CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TEEEEECCSCCHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHcCCCeEEecCCC-EEeecCCeEEEEEeCCCccCcccChHHHHh--hcEEEEEeCCCHHHH
Confidence 11222233333333344545555555 42 112346678999999 45789999997 4444333 9999888
Q ss_pred HHHH
Q 012383 304 IGVC 307 (465)
Q Consensus 304 ~~Il 307 (465)
.+|+
T Consensus 746 ~ei~ 749 (3245)
T 3vkg_A 746 AQVM 749 (3245)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7775
No 112
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.76 E-value=0.00015 Score=66.89 Aligned_cols=37 Identities=24% Similarity=0.291 Sum_probs=28.6
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEec
Q 012383 145 NIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMS 181 (465)
Q Consensus 145 ~~~~p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs 181 (465)
|+++...++|+||||+|||+|++.++... +..++.++
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 56666789999999999999999999653 44444443
No 113
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.73 E-value=0.00018 Score=69.06 Aligned_cols=56 Identities=13% Similarity=0.207 Sum_probs=42.0
Q ss_pred HHHHHHHHHhhhh-CCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEeccccc
Q 012383 130 DKLVVHITKNFMS-LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 185 (465)
Q Consensus 130 d~~~~~i~k~~l~-~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L 185 (465)
..+...+.+.++. ......|..++|.||||+|||++++.++..++..++.+++..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 12 KHALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred HHHHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 3444444454443 2356678899999999999999999999999877777777665
No 114
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.72 E-value=3.3e-05 Score=78.78 Aligned_cols=83 Identities=16% Similarity=0.184 Sum_probs=53.6
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEecccccccC----CCCChH--------HHHHHHHHHHHHHH
Q 012383 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG----NAGEPA--------KLIRQRYREAADII 208 (465)
Q Consensus 144 ~~~~~p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~s~L~s~----~~Ge~~--------k~Ir~~F~~A~~~i 208 (465)
.|+++...++|+||||+|||+||..+|... |..+++++...-.+. ..|... ....++...+..++
T Consensus 58 GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~ 137 (356)
T 1u94_A 58 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALA 137 (356)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHH
Confidence 367777899999999999999999988763 567777776432110 011100 01122233333334
Q ss_pred HhCCceEEEecccccccC
Q 012383 209 KKGKMCCLMINDLDAGAG 226 (465)
Q Consensus 209 ~~~~p~ILfIDEIDai~~ 226 (465)
+...+.+|+||.+..+..
T Consensus 138 ~~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 138 RSGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HHTCCSEEEEECGGGCCC
T ss_pred hccCCCEEEEcCHHHhcc
Confidence 567899999999998874
No 115
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.72 E-value=3.8e-05 Score=91.84 Aligned_cols=82 Identities=16% Similarity=0.204 Sum_probs=58.9
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEecccccc----cCCCCC--------hHHHHHHHHHHHHHHHH
Q 012383 145 NIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELE----SGNAGE--------PAKLIRQRYREAADIIK 209 (465)
Q Consensus 145 ~~~~p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~s~L~----s~~~Ge--------~~k~Ir~~F~~A~~~i~ 209 (465)
|+.+...++|+||||+|||+||..+|.++ |.++++++..+.. ....|- .+..+.+++..+..+++
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~lv~ 807 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHHHHH
Confidence 68888999999999999999999998874 4567777765433 122221 11134455666655556
Q ss_pred hCCceEEEecccccccC
Q 012383 210 KGKMCCLMINDLDAGAG 226 (465)
Q Consensus 210 ~~~p~ILfIDEIDai~~ 226 (465)
...|.+|+||.|..+.+
T Consensus 808 ~~~~~lVVIDsLq~l~~ 824 (1706)
T 3cmw_A 808 SGAVDVIVVDSVAALTP 824 (1706)
T ss_dssp HTCCSEEEESCSTTCCC
T ss_pred ccCCCEEEEechhhhcc
Confidence 78999999999999874
No 116
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.69 E-value=8.5e-05 Score=69.38 Aligned_cols=84 Identities=13% Similarity=0.150 Sum_probs=53.2
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHHHH--h-------CCceEEeccccccc--------CCCCC--------------
Q 012383 144 PNIKVPLILGIWGGKGQGKSFQCELVFAK--M-------GINPIMMSAGELES--------GNAGE-------------- 192 (465)
Q Consensus 144 ~~~~~p~glLL~GPPGtGKT~LAraIA~e--l-------g~~~i~vs~s~L~s--------~~~Ge-------------- 192 (465)
.|+++...++|+||||+|||+|++.++.. + +...++++...... ...|-
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 98 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARA 98 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEEC
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEec
Confidence 46777788999999999999999999985 2 34566665543100 00111
Q ss_pred -hHHHHHHHHHHHHHHHHhCCceEEEecccccccCC
Q 012383 193 -PAKLIRQRYREAADIIKKGKMCCLMINDLDAGAGR 227 (465)
Q Consensus 193 -~~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~ 227 (465)
+...+...+..+.+.+....|.+|+|||+-.+...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~ 134 (243)
T 1n0w_A 99 FNTDHQTQLLYQASAMMVESRYALLIVDSATALYRT 134 (243)
T ss_dssp CSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-
T ss_pred CCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHH
Confidence 11112223333444456678999999999877543
No 117
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.69 E-value=7.4e-05 Score=73.58 Aligned_cols=63 Identities=13% Similarity=0.213 Sum_probs=46.4
Q ss_pred CchhHHHHHHHHHHHhhhh-CCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccc
Q 012383 124 IAPAFMDKLVVHITKNFMS-LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 186 (465)
Q Consensus 124 i~~~~~d~~~~~i~k~~l~-~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~ 186 (465)
+++.-..++...+...++. ......|..++|.||||+|||++++.++.+++...+.+++..+.
T Consensus 7 ~s~~~~~~~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R 70 (287)
T 1gvn_B 7 FTDKQFENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFK 70 (287)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHH
T ss_pred CCHHHHHHHHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhH
Confidence 4455555666677777774 23445578999999999999999999999986556777765443
No 118
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.62 E-value=3.8e-05 Score=69.23 Aligned_cols=33 Identities=12% Similarity=-0.124 Sum_probs=29.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHhCCceEEec
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 181 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs 181 (465)
++.|+|.||||||||++++.+|+.+|++++..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 568999999999999999999999999888654
No 119
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.61 E-value=5.4e-05 Score=68.31 Aligned_cols=35 Identities=11% Similarity=0.254 Sum_probs=30.9
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEE
Q 012383 145 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (465)
Q Consensus 145 ~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~ 179 (465)
|.+.|+.|+|.|+||+|||++++.++..+|..++.
T Consensus 1 ~~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 1 GMQTPALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp CCSCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 34567899999999999999999999999987766
No 120
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.56 E-value=0.00018 Score=69.46 Aligned_cols=71 Identities=15% Similarity=0.173 Sum_probs=45.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHH---hCCceEEecccccccC---CCCChHHHHHHHHHHHHHHHHhCCceEEEecc
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELESG---NAGEPAKLIRQRYREAADIIKKGKMCCLMIND 220 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~e---lg~~~i~vs~s~L~s~---~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDE 220 (465)
.+..|+|.|+||+|||++|+.++.. .|..++.++...+... |....+..++.....+...... . ..++||.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l~~~~~~~e~~~~~~~~~~i~~~l~-~-~~vIiD~ 79 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPVWKEKYEEFIKKSTYRLIDSALK-N-YWVIVDD 79 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTSSSCCGGGHHHHHHHHHHHHHHHHT-T-SEEEECS
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHHhhhhHHHHHHHHHHHHHHHHHHhh-C-CEEEEeC
Confidence 3568999999999999999999998 7888886666554433 3222344444433222111112 2 6777775
No 121
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.54 E-value=0.00069 Score=67.41 Aligned_cols=147 Identities=12% Similarity=0.097 Sum_probs=87.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHh---CCce-EEecccccccCCCCChHHHHHHHHHHHHHHHHhCCceEEEecccc
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKM---GINP-IMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLD 222 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~el---g~~~-i~vs~s~L~s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~ILfIDEID 222 (465)
+.+...|||||+|+||+..++.+++.+ +... ..+. + + |+ ..++++...+...--.+...|++|||.+
T Consensus 16 ~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~---~-~---~~--~~~~~l~~~~~~~plf~~~kvvii~~~~ 86 (343)
T 1jr3_D 16 GLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS---I-D---PN--TDWNAIFSLCQAMSLFASRQTLLLLLPE 86 (343)
T ss_dssp CCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE---C-C---TT--CCHHHHHHHHHHHHHCCSCEEEEEECCS
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE---e-c---CC--CCHHHHHHHhcCcCCccCCeEEEEECCC
Confidence 346799999999999999999998875 3321 1111 1 1 11 2345565555222125667899999997
Q ss_pred c-ccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCC------CCCChhhhcCCCceEEE
Q 012383 223 A-GAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDF------STLYAPLIRDGRMEKFY 295 (465)
Q Consensus 223 a-i~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~------~~LD~ALlR~GRfd~~i 295 (465)
. +... ....|+..+. +..+.+++|.+|+.+ ..+.+++.. |+..+-
T Consensus 87 ~kl~~~-------------~~~aLl~~le-------------~p~~~~~~il~~~~~~~~~~~~k~~~~i~s--r~~~~~ 138 (343)
T 1jr3_D 87 NGPNAA-------------INEQLLTLTG-------------LLHDDLLLIVRGNKLSKAQENAAWFTALAN--RSVQVT 138 (343)
T ss_dssp SCCCTT-------------HHHHHHHHHT-------------TCBTTEEEEEEESCCCTTTTTSHHHHHHTT--TCEEEE
T ss_pred CCCChH-------------HHHHHHHHHh-------------cCCCCeEEEEEcCCCChhhHhhHHHHHHHh--CceEEE
Confidence 6 3211 1223444444 233456666666654 346677775 443333
Q ss_pred e-CCCHHHHHHHHHHhccCCC--CChhHHHHHhcCCCc
Q 012383 296 W-APTREDRIGVCKGIFRNDN--VADDDIVKLVDTFPG 330 (465)
Q Consensus 296 ~-~P~~e~R~~Il~~~l~~~~--v~~~~la~lt~gfsg 330 (465)
. .|+..+....++..++..+ ++.+.+..+++...|
T Consensus 139 ~~~l~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g 176 (343)
T 1jr3_D 139 CQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYCYEG 176 (343)
T ss_dssp ECCCCTTHHHHHHHHHHHHTTCEECHHHHHHHHHSSTT
T ss_pred eeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhch
Confidence 3 7788888888888776665 455555555544333
No 122
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.53 E-value=0.0003 Score=65.84 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=23.7
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHH
Q 012383 145 NIKVPLILGIWGGKGQGKSFQCELVF 170 (465)
Q Consensus 145 ~~~~p~glLL~GPPGtGKT~LAraIA 170 (465)
|+++...++|.||+|+|||+|+++++
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 66777889999999999999999998
No 123
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.52 E-value=0.00017 Score=72.79 Aligned_cols=83 Identities=13% Similarity=0.093 Sum_probs=50.8
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHHHHh-----CCceEEeccccccc----CCCCCh--------HHHHHHH-HHHHH
Q 012383 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELES----GNAGEP--------AKLIRQR-YREAA 205 (465)
Q Consensus 144 ~~~~~p~glLL~GPPGtGKT~LAraIA~el-----g~~~i~vs~s~L~s----~~~Ge~--------~k~Ir~~-F~~A~ 205 (465)
.|+.+. .++|+||||+|||+|+-.++.+. |-..++++..+-.+ ...|-. +....+. +..+.
T Consensus 24 GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 24 GGMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp CCBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred CCCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 355544 67999999999999988776653 55677776553221 111110 0112222 22222
Q ss_pred HH--HHhCCceEEEecccccccCC
Q 012383 206 DI--IKKGKMCCLMINDLDAGAGR 227 (465)
Q Consensus 206 ~~--i~~~~p~ILfIDEIDai~~~ 227 (465)
.+ ++...|.+|+||-|-++.++
T Consensus 103 ~l~~i~~~~~~lvVIDSI~aL~~~ 126 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLGNLASK 126 (333)
T ss_dssp HHHTCCTTCCEEEEEECSTTCBCC
T ss_pred HHHHhhccCceEEEEecccccccc
Confidence 22 46778999999999998753
No 124
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.50 E-value=0.00026 Score=71.63 Aligned_cols=82 Identities=16% Similarity=0.167 Sum_probs=53.3
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHHHHhC---------CceEEecccccc---------cCC------------CCC-
Q 012383 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKMG---------INPIMMSAGELE---------SGN------------AGE- 192 (465)
Q Consensus 144 ~~~~~p~glLL~GPPGtGKT~LAraIA~elg---------~~~i~vs~s~L~---------s~~------------~Ge- 192 (465)
.++++...++|+||||+|||+|++.++.... -..++++..+.. ... +..
T Consensus 126 ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~~ni~~~~~ 205 (349)
T 1pzn_A 126 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARA 205 (349)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHGGGEEEEEC
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHhhCEEEEec
Confidence 4777778899999999999999999998862 234565543321 000 000
Q ss_pred -hHHHHHHHHHHHHHHHHh-----CCceEEEeccccccc
Q 012383 193 -PAKLIRQRYREAADIIKK-----GKMCCLMINDLDAGA 225 (465)
Q Consensus 193 -~~k~Ir~~F~~A~~~i~~-----~~p~ILfIDEIDai~ 225 (465)
......+++..+...+.. ..|.+|+|||+-++.
T Consensus 206 ~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~l 244 (349)
T 1pzn_A 206 FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHF 244 (349)
T ss_dssp CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTH
T ss_pred CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhh
Confidence 011223444555555555 689999999997765
No 125
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.50 E-value=7.1e-05 Score=68.89 Aligned_cols=36 Identities=17% Similarity=0.117 Sum_probs=30.4
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEec
Q 012383 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 181 (465)
Q Consensus 146 ~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs 181 (465)
+.+.+.|+|.||||||||++++.+|+.+|..++..+
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 345678999999999999999999999999887644
No 126
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.49 E-value=0.00023 Score=73.72 Aligned_cols=84 Identities=13% Similarity=0.133 Sum_probs=52.5
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHHHHh---------CCceEEeccccccc--------CCCCCh-------------
Q 012383 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---------GINPIMMSAGELES--------GNAGEP------------- 193 (465)
Q Consensus 144 ~~~~~p~glLL~GPPGtGKT~LAraIA~el---------g~~~i~vs~s~L~s--------~~~Ge~------------- 193 (465)
.|+++-..++|+||||||||+|++.++... +-..++++..+... ..+|-.
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~ 252 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARA 252 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEEC
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEecc
Confidence 377777899999999999999999776443 22356665543210 001110
Q ss_pred --HHHHHHHHHHHHHHHHhCCceEEEecccccccCC
Q 012383 194 --AKLIRQRYREAADIIKKGKMCCLMINDLDAGAGR 227 (465)
Q Consensus 194 --~k~Ir~~F~~A~~~i~~~~p~ILfIDEIDai~~~ 227 (465)
.........++...+....|.+|+||++-.+...
T Consensus 253 ~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~ 288 (400)
T 3lda_A 253 YNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRT 288 (400)
T ss_dssp CSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC-
T ss_pred CChHHHHHHHHHHHHHHHhcCCceEEecchhhhCch
Confidence 1112233444545556778999999999777543
No 127
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.46 E-value=8.5e-05 Score=66.83 Aligned_cols=34 Identities=21% Similarity=0.174 Sum_probs=29.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEe
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~v 180 (465)
..++.|+|+|+||+|||++++.+++.++..++.+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 3456799999999999999999999999887754
No 128
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.43 E-value=0.00021 Score=71.21 Aligned_cols=83 Identities=10% Similarity=0.167 Sum_probs=54.8
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHHHHh---------CCceEEeccccccc--------CCCCC--------------
Q 012383 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---------GINPIMMSAGELES--------GNAGE-------------- 192 (465)
Q Consensus 144 ~~~~~p~glLL~GPPGtGKT~LAraIA~el---------g~~~i~vs~s~L~s--------~~~Ge-------------- 192 (465)
.|+++...++|+||||+|||++|..+|... +...++++...-.+ ...|-
T Consensus 102 GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~ 181 (324)
T 2z43_A 102 GGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRA 181 (324)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEEC
T ss_pred CCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeC
Confidence 467777899999999999999999999874 45566666543210 00111
Q ss_pred -hHHHHHHHHHHHHHHHHh-CCceEEEecccccccC
Q 012383 193 -PAKLIRQRYREAADIIKK-GKMCCLMINDLDAGAG 226 (465)
Q Consensus 193 -~~k~Ir~~F~~A~~~i~~-~~p~ILfIDEIDai~~ 226 (465)
+...+.+++..+...++. ..+.+|+||.+..+..
T Consensus 182 ~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 217 (324)
T 2z43_A 182 INTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFR 217 (324)
T ss_dssp CSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhh
Confidence 111122334444455566 7899999999988753
No 129
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.43 E-value=0.00026 Score=66.50 Aligned_cols=110 Identities=13% Similarity=0.167 Sum_probs=67.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH---hCCceEEe---ccc------ccccCC-----------CCC------hHHHHHHHH
Q 012383 151 ILGIWGGKGQGKSFQCELVFAK---MGINPIMM---SAG------ELESGN-----------AGE------PAKLIRQRY 201 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~e---lg~~~i~v---s~s------~L~s~~-----------~Ge------~~k~Ir~~F 201 (465)
.|++|+++|.|||+.|-.+|-. .|..+..+ ++. .+.... .-. .....+..+
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~l 109 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAVW 109 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHHH
Confidence 5789999999999999988877 47777765 331 122222 111 124456667
Q ss_pred HHHHHHHHhCCceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCCCC
Q 012383 202 REAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTL 281 (465)
Q Consensus 202 ~~A~~~i~~~~p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~~L 281 (465)
..+.+.+......+|+|||+-....-.- ..... +++++. ....+.-||+|+|.+
T Consensus 110 ~~a~~~l~~~~yDlvILDEi~~al~~g~------l~~~e----v~~~l~-------------~Rp~~~~vIlTGr~a--- 163 (196)
T 1g5t_A 110 QHGKRMLADPLLDMVVLDELTYMVAYDY------LPLEE----VISALN-------------ARPGHQTVIITGRGC--- 163 (196)
T ss_dssp HHHHHHTTCTTCSEEEEETHHHHHHTTS------SCHHH----HHHHHH-------------TSCTTCEEEEECSSC---
T ss_pred HHHHHHHhcCCCCEEEEeCCCccccCCC------CCHHH----HHHHHH-------------hCcCCCEEEEECCCC---
Confidence 7776666678889999999943221111 00111 223333 344667899999985
Q ss_pred Chhhh
Q 012383 282 YAPLI 286 (465)
Q Consensus 282 D~ALl 286 (465)
++.|+
T Consensus 164 p~~l~ 168 (196)
T 1g5t_A 164 HRDIL 168 (196)
T ss_dssp CHHHH
T ss_pred cHHHH
Confidence 55555
No 130
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=97.43 E-value=0.00042 Score=54.88 Aligned_cols=39 Identities=21% Similarity=0.250 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHHhccCC----CCChhHHHHHhcCCCchhhHH
Q 012383 297 APTREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF 335 (465)
Q Consensus 297 ~P~~e~R~~Il~~~l~~~----~v~~~~la~lt~gfsgadld~ 335 (465)
+|+.++|.+||+.|+++. +++.+.|++.|+||||+||..
T Consensus 2 lPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~ 44 (78)
T 3kw6_A 2 PPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKG 44 (78)
T ss_dssp CCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHH
T ss_pred cCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHH
Confidence 699999999999999764 567789999999999999974
No 131
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.42 E-value=0.00064 Score=63.37 Aligned_cols=38 Identities=24% Similarity=0.326 Sum_probs=29.1
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHHHH---hCCceEEec
Q 012383 144 PNIKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMS 181 (465)
Q Consensus 144 ~~~~~p~glLL~GPPGtGKT~LAraIA~e---lg~~~i~vs 181 (465)
.|+++...++|+||||+|||+++..++.. .+...++++
T Consensus 18 gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 18 GGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp TSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 46666778999999999999999887765 355555544
No 132
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.39 E-value=0.00011 Score=66.01 Aligned_cols=31 Identities=35% Similarity=0.705 Sum_probs=28.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHhCCceEE
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~elg~~~i~ 179 (465)
|+.|+|.|+||+|||++|+.+++.+|++++.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 33 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLS 33 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 6789999999999999999999999987654
No 133
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.39 E-value=0.00014 Score=66.78 Aligned_cols=35 Identities=26% Similarity=0.281 Sum_probs=30.4
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEe
Q 012383 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (465)
Q Consensus 146 ~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~v 180 (465)
-..|..|+|.|+||+|||++|+.+++.+|++++.+
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 34567899999999999999999999999887664
No 134
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.39 E-value=0.00014 Score=69.30 Aligned_cols=41 Identities=32% Similarity=0.577 Sum_probs=33.7
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecccccc
Q 012383 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 186 (465)
Q Consensus 144 ~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~ 186 (465)
...+.|+.|+|.||||+||+++|+.|++++|+. .++.++++
T Consensus 24 ~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~--hIstGdll 64 (217)
T 3umf_A 24 QKLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFN--HLSSGDLL 64 (217)
T ss_dssp CCTTSCEEEEEECCTTCCHHHHHHHHHHHHCCE--EECHHHHH
T ss_pred hhccCCcEEEEECCCCCCHHHHHHHHHHHHCCc--eEcHHHHH
Confidence 466778999999999999999999999999865 45555443
No 135
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.37 E-value=0.00024 Score=70.41 Aligned_cols=29 Identities=14% Similarity=0.100 Sum_probs=25.9
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHHHH
Q 012383 144 PNIKVPLILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 144 ~~~~~p~glLL~GPPGtGKT~LAraIA~e 172 (465)
.|+++...++|+||||+|||++|..+|..
T Consensus 93 GGl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 93 GGLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46777788999999999999999999876
No 136
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=97.37 E-value=0.00054 Score=55.80 Aligned_cols=39 Identities=21% Similarity=0.241 Sum_probs=35.2
Q ss_pred CCCHHHHHHHHHHhccCC----CCChhHHHHHhcCCCchhhHH
Q 012383 297 APTREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF 335 (465)
Q Consensus 297 ~P~~e~R~~Il~~~l~~~----~v~~~~la~lt~gfsgadld~ 335 (465)
+|+.++|.+||+.++++. +++.+.|++.|+||||+||..
T Consensus 10 ~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~ 52 (86)
T 2krk_A 10 HPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKG 52 (86)
T ss_dssp CCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHH
T ss_pred CcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHH
Confidence 899999999999999864 567789999999999999974
No 137
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.36 E-value=0.00041 Score=64.00 Aligned_cols=30 Identities=20% Similarity=0.302 Sum_probs=26.3
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHHHHh
Q 012383 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 144 ~~~~~p~glLL~GPPGtGKT~LAraIA~el 173 (465)
.|+++...+.|.||+|+|||+|++.++...
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 467777889999999999999999999853
No 138
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.35 E-value=0.00016 Score=63.83 Aligned_cols=31 Identities=16% Similarity=-0.060 Sum_probs=27.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEEec
Q 012383 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMMS 181 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~elg~~~i~vs 181 (465)
.|+|.||||+|||++++.+++.++++++...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 5889999999999999999999998887644
No 139
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.34 E-value=0.00044 Score=69.66 Aligned_cols=83 Identities=14% Similarity=0.075 Sum_probs=53.3
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHHHHh---------CCceEEeccccccc--------CCCCCh-------------
Q 012383 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---------GINPIMMSAGELES--------GNAGEP------------- 193 (465)
Q Consensus 144 ~~~~~p~glLL~GPPGtGKT~LAraIA~el---------g~~~i~vs~s~L~s--------~~~Ge~------------- 193 (465)
.|+++...++|+||||+|||++|..+|... +...++++.....+ ...|-.
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~ 196 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARA 196 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEEC
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeec
Confidence 477777889999999999999999999872 44566666543210 001110
Q ss_pred --HHHHHHHHHHHHHHHHh--CCceEEEecccccccC
Q 012383 194 --AKLIRQRYREAADIIKK--GKMCCLMINDLDAGAG 226 (465)
Q Consensus 194 --~k~Ir~~F~~A~~~i~~--~~p~ILfIDEIDai~~ 226 (465)
...+..+...+...++. ..+.+|+||.+..+..
T Consensus 197 ~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~ 233 (343)
T 1v5w_A 197 YTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFR 233 (343)
T ss_dssp CSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHH
Confidence 01111233334444556 7899999999988863
No 140
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.34 E-value=0.00012 Score=65.99 Aligned_cols=32 Identities=19% Similarity=0.135 Sum_probs=28.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhCCceEEec
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMMS 181 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~elg~~~i~vs 181 (465)
..|+|.|+||+|||++|+.+++.+|++++..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 35899999999999999999999999877643
No 141
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.34 E-value=0.00014 Score=65.78 Aligned_cols=34 Identities=32% Similarity=0.521 Sum_probs=29.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEec
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 181 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs 181 (465)
.++.|+|.|+||+|||++++.+++.+|..++..+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d 41 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTG 41 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHH
Confidence 4578999999999999999999999998776543
No 142
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.32 E-value=0.00015 Score=67.62 Aligned_cols=34 Identities=15% Similarity=0.192 Sum_probs=29.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEe
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~v 180 (465)
+.+..|+|.|+||+|||++++.+|+.+++.++.+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 3467899999999999999999999999876654
No 143
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.32 E-value=0.00014 Score=65.73 Aligned_cols=41 Identities=24% Similarity=0.227 Sum_probs=33.0
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEeccccc
Q 012383 145 NIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 185 (465)
Q Consensus 145 ~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L 185 (465)
.++.+..++|.||||+|||+++++++...+...+.+++.++
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 35667889999999999999999999987777777665443
No 144
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.32 E-value=0.00014 Score=66.18 Aligned_cols=33 Identities=24% Similarity=0.351 Sum_probs=28.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHH-hCCceEEec
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAK-MGINPIMMS 181 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~e-lg~~~i~vs 181 (465)
+..|+|.|+||||||++++.+++. +|++++.++
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d 43 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLEVG 43 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHH
Confidence 457999999999999999999999 787776643
No 145
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.30 E-value=0.00019 Score=64.34 Aligned_cols=33 Identities=27% Similarity=0.511 Sum_probs=29.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEe
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~elg~~~i~v 180 (465)
.|+.|+|.|+||+|||++++.+++.+|+.++..
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 467899999999999999999999999776654
No 146
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.30 E-value=0.00016 Score=64.29 Aligned_cols=32 Identities=19% Similarity=0.106 Sum_probs=29.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhCCceEEec
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMMS 181 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~elg~~~i~vs 181 (465)
..|+|.|+||||||++++.+|+.+|++++..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D 39 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTD 39 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 47899999999999999999999999888643
No 147
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.29 E-value=0.00017 Score=64.10 Aligned_cols=31 Identities=16% Similarity=0.075 Sum_probs=27.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHhCCceEE
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~elg~~~i~ 179 (465)
+..|+|.||||||||++++.+|..++..++.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 4568999999999999999999999976554
No 148
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.28 E-value=0.00015 Score=65.00 Aligned_cols=30 Identities=17% Similarity=0.094 Sum_probs=27.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEEe
Q 012383 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~elg~~~i~v 180 (465)
.|+|.||||+|||++++.+|+.++++++..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~ 35 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDS 35 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 588999999999999999999999887653
No 149
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.27 E-value=0.00014 Score=64.70 Aligned_cols=30 Identities=30% Similarity=0.274 Sum_probs=25.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHH-HhCCceE
Q 012383 149 PLILGIWGGKGQGKSFQCELVFA-KMGINPI 178 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~-elg~~~i 178 (465)
|+.|+|.|+||+|||++|+.+++ .++..++
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i 32 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCcEEe
Confidence 57899999999999999999998 4554433
No 150
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.25 E-value=0.00018 Score=65.22 Aligned_cols=32 Identities=38% Similarity=0.567 Sum_probs=28.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHhCCceEEe
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~elg~~~i~v 180 (465)
|+.|+|.|+||+|||++|+.+++.+|+.++.+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 56899999999999999999999999766654
No 151
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.25 E-value=0.00047 Score=64.31 Aligned_cols=37 Identities=19% Similarity=0.258 Sum_probs=28.9
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHHHH----hCCceEEec
Q 012383 145 NIKVPLILGIWGGKGQGKSFQCELVFAK----MGINPIMMS 181 (465)
Q Consensus 145 ~~~~p~glLL~GPPGtGKT~LAraIA~e----lg~~~i~vs 181 (465)
|+++...++|+|+||+|||.+|..+|.. .+.+.++++
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s 66 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeec
Confidence 6777788999999999999999876643 356666655
No 152
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.25 E-value=0.00018 Score=63.01 Aligned_cols=30 Identities=33% Similarity=0.401 Sum_probs=26.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhCCceEEe
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~elg~~~i~v 180 (465)
..|+|.||||+|||++|+.+ ..+|.+++.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 36889999999999999999 8899887764
No 153
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.24 E-value=0.00017 Score=67.58 Aligned_cols=34 Identities=18% Similarity=0.185 Sum_probs=28.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEe
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~v 180 (465)
..|..|+|.|+||+|||++++.+|+++|..++.+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 3467899999999999999999999999876654
No 154
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.23 E-value=0.00022 Score=65.23 Aligned_cols=35 Identities=23% Similarity=0.400 Sum_probs=29.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEec
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 181 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs 181 (465)
+.++.|+|.|+||+|||++++.+++++|+.++..+
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d 47 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAG 47 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHH
Confidence 34678999999999999999999999998666543
No 155
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.23 E-value=0.0002 Score=64.44 Aligned_cols=31 Identities=19% Similarity=0.282 Sum_probs=27.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHhCCceEE
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~elg~~~i~ 179 (465)
+..|+|.|+||+|||++++.+++.+|+.++.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~~~~i~ 34 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELGFKKLS 34 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHTCEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 4678999999999999999999999876554
No 156
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.23 E-value=0.00015 Score=64.87 Aligned_cols=30 Identities=20% Similarity=0.226 Sum_probs=23.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHhCCceE
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKMGINPI 178 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~elg~~~i 178 (465)
|..|+|.|+||+|||++++.+++.++.+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 568999999999999999999999999876
No 157
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.21 E-value=0.0036 Score=66.56 Aligned_cols=24 Identities=29% Similarity=0.253 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFA 171 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~ 171 (465)
.++.++|+||+|+|||+||+.+++
T Consensus 146 ~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 146 EPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCceEEEEcCCCCCHHHHHHHHHh
Confidence 357899999999999999999875
No 158
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.21 E-value=0.00025 Score=65.01 Aligned_cols=32 Identities=28% Similarity=0.215 Sum_probs=28.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHhCCceEEe
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~elg~~~i~v 180 (465)
++.|+|.|+||+|||++++.+++.+|..++..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~ 49 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEG 49 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeC
Confidence 56899999999999999999999999876653
No 159
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.20 E-value=0.00024 Score=67.85 Aligned_cols=34 Identities=18% Similarity=0.003 Sum_probs=29.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEe
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~v 180 (465)
+.|.-|+|.||||+|||++|+.+++++|+.++.+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 4678899999999999999999999998766654
No 160
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.19 E-value=0.00019 Score=64.33 Aligned_cols=26 Identities=15% Similarity=0.284 Sum_probs=24.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHhC
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKMG 174 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~elg 174 (465)
++.|+|.|+||+|||++++.+++.++
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999999987
No 161
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.18 E-value=0.0015 Score=68.15 Aligned_cols=38 Identities=11% Similarity=0.050 Sum_probs=30.8
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHHHHh----CCceEEec
Q 012383 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMS 181 (465)
Q Consensus 144 ~~~~~p~glLL~GPPGtGKT~LAraIA~el----g~~~i~vs 181 (465)
.|+.+..-++|.|+||+|||+++..+|... |.++++++
T Consensus 198 gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 198 SGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp SSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 477777889999999999999999888763 55666655
No 162
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.17 E-value=0.00023 Score=63.13 Aligned_cols=31 Identities=13% Similarity=0.094 Sum_probs=27.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhCCceEEe
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~elg~~~i~v 180 (465)
+.|+|.|+||+|||++++.+++.+|++++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDT 33 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEcc
Confidence 4589999999999999999999999887653
No 163
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.15 E-value=0.00029 Score=66.42 Aligned_cols=33 Identities=15% Similarity=0.147 Sum_probs=28.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEe
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~elg~~~i~v 180 (465)
.+..|+|.|+||+|||++|+.+|+++++.++.+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 346799999999999999999999999876654
No 164
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.10 E-value=0.00037 Score=67.10 Aligned_cols=33 Identities=18% Similarity=0.227 Sum_probs=29.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhCCceEEecc
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 182 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~ 182 (465)
+.++|.||||+|||++|+.+|++++..++..+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 368899999999999999999999998887654
No 165
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.10 E-value=0.0003 Score=65.08 Aligned_cols=30 Identities=37% Similarity=0.386 Sum_probs=26.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEEe
Q 012383 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~elg~~~i~v 180 (465)
.|+|.||||+|||++|+.+++++|+.++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 378999999999999999999999877764
No 166
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.09 E-value=0.00028 Score=65.85 Aligned_cols=32 Identities=28% Similarity=0.475 Sum_probs=28.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHhCCceEEe
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~elg~~~i~v 180 (465)
+..|+|.|+||+|||++++.+|+.+|+.++.+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 35689999999999999999999999877664
No 167
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.09 E-value=0.00032 Score=64.74 Aligned_cols=30 Identities=30% Similarity=0.335 Sum_probs=26.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEEe
Q 012383 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~elg~~~i~v 180 (465)
-|+|.||||+|||++|+.+++++|+.++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 478999999999999999999999887764
No 168
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.08 E-value=0.00038 Score=61.44 Aligned_cols=30 Identities=20% Similarity=0.058 Sum_probs=27.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEEe
Q 012383 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~elg~~~i~v 180 (465)
.|+|.|+||+|||++++.+++.+|++++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 31 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDV 31 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 488999999999999999999999887763
No 169
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.06 E-value=0.00044 Score=65.64 Aligned_cols=42 Identities=19% Similarity=0.291 Sum_probs=28.4
Q ss_pred HHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEE
Q 012383 137 TKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (465)
Q Consensus 137 ~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~ 179 (465)
.+.|....+. .|..++|.||||+|||++++.+++++|...+.
T Consensus 16 ~~~~~~~~~~-~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 16 ENLYFQSMAS-KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp -----------CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred HHHHHHHhcC-CCcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 3344433332 36789999999999999999999999886654
No 170
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.06 E-value=0.00023 Score=66.33 Aligned_cols=32 Identities=38% Similarity=0.511 Sum_probs=27.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHhCCceEE
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~elg~~~i~ 179 (465)
.|+.|+|.||||+|||++++.+|+.++..++.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 45679999999999999999999999975544
No 171
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.05 E-value=0.00051 Score=61.26 Aligned_cols=31 Identities=23% Similarity=0.152 Sum_probs=26.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHhCCceEE
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~elg~~~i~ 179 (465)
...++|.||||+|||++++.++..+|..++.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 4678999999999999999999998865554
No 172
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.05 E-value=0.0025 Score=66.27 Aligned_cols=39 Identities=13% Similarity=0.001 Sum_probs=31.5
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHHHHh----CCceEEecc
Q 012383 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSA 182 (465)
Q Consensus 144 ~~~~~p~glLL~GPPGtGKT~LAraIA~el----g~~~i~vs~ 182 (465)
.|+.+..-++|.|+||+|||++|..+|... |.++++++.
T Consensus 195 gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 195 GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 578888889999999999999999888763 556666554
No 173
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.05 E-value=0.00047 Score=63.36 Aligned_cols=33 Identities=18% Similarity=0.151 Sum_probs=27.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEE
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~ 179 (465)
+++..++|.||||+|||+++++++..+|..++.
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~ 59 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADETGLEFAE 59 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhCCeEEc
Confidence 346789999999999999999999999765443
No 174
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.01 E-value=0.00055 Score=61.47 Aligned_cols=39 Identities=15% Similarity=0.128 Sum_probs=32.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEeccccc
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGEL 185 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~s~L 185 (465)
..+..+.|.|++|+|||++++.++..+ |++++.+++..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHH
Confidence 346778999999999999999999998 999888765433
No 175
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.01 E-value=0.00063 Score=64.96 Aligned_cols=73 Identities=11% Similarity=0.059 Sum_probs=43.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh---CCceEEecccc-------cccCCCCCh-----HHHHHHHHHHHHHHHHhCCce
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGE-------LESGNAGEP-----AKLIRQRYREAADIIKKGKMC 214 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~s~-------L~s~~~Ge~-----~k~Ir~~F~~A~~~i~~~~p~ 214 (465)
..++++||||+|||+++..++..+ |..++.++... +.+. .|-. .....+++..+.+.+....+.
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~d 91 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDETK 91 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTCC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCCC
Confidence 567889999999999999887774 55666653222 2222 2321 011223444442222235689
Q ss_pred EEEeccccc
Q 012383 215 CLMINDLDA 223 (465)
Q Consensus 215 ILfIDEIDa 223 (465)
+|+|||+.-
T Consensus 92 vViIDEaQ~ 100 (223)
T 2b8t_A 92 VIGIDEVQF 100 (223)
T ss_dssp EEEECSGGG
T ss_pred EEEEecCcc
Confidence 999999954
No 176
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.98 E-value=0.0018 Score=68.01 Aligned_cols=89 Identities=16% Similarity=0.148 Sum_probs=66.1
Q ss_pred ceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEe-----CCCCCCChhhhc
Q 012383 213 MCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTG-----NDFSTLYAPLIR 287 (465)
Q Consensus 213 p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TT-----N~~~~LD~ALlR 287 (465)
..|||+||||+++...+ +....+...-+++.|+.++++.++.. .+......+|++|+|+ |..+ +-|+|+
T Consensus 251 ~~il~~DEidki~~~~~-~~~~D~s~egvq~aLL~~le~~~~~~---~~~~~d~~~ilfI~~gaf~~~~~~d-lipel~- 324 (444)
T 1g41_A 251 NGIVFIDEIDKICKKGE-YSGADVSREGVQRDLLPLVEGSTVST---KHGMVKTDHILFIASGAFQVARPSD-LIPELQ- 324 (444)
T ss_dssp HCEEEEETGGGGSCCSS-CSSSHHHHHHHHHHHHHHHHCCEEEE---TTEEEECTTCEEEEEECCSSCCGGG-SCHHHH-
T ss_pred CCeeeHHHHHHHhhccC-CCCCCchHHHHHHHHHHHhccccccc---ccceecCCcEEEEeccccccCChhh-cchHHh-
Confidence 46999999999987643 23455666778899999999654332 2233567889999998 5444 457787
Q ss_pred CCCceEEEe--CCCHHHHHHHHH
Q 012383 288 DGRMEKFYW--APTREDRIGVCK 308 (465)
Q Consensus 288 ~GRfd~~i~--~P~~e~R~~Il~ 308 (465)
|||...+. ..+.++..+|+.
T Consensus 325 -~R~~i~i~l~~lt~~e~~~Il~ 346 (444)
T 1g41_A 325 -GRLPIRVELTALSAADFERILT 346 (444)
T ss_dssp -TTCCEEEECCCCCHHHHHHHHH
T ss_pred -cccceeeeCCCCCHHHHHHHHH
Confidence 69999887 779999999983
No 177
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.97 E-value=0.002 Score=59.06 Aligned_cols=39 Identities=15% Similarity=0.160 Sum_probs=30.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEeccccc
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGEL 185 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~s~L 185 (465)
.++..+.|.||+|||||+++++++..+ |...+.+++..+
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 456789999999999999999999998 555445554444
No 178
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.97 E-value=0.00049 Score=64.72 Aligned_cols=33 Identities=33% Similarity=0.487 Sum_probs=27.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEEeccccc
Q 012383 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 185 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L 185 (465)
.|+|.||||+||+++|+.||+++|++.+ +.+++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~i--stGdl 34 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHI--STGDI 34 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEE--EHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEE--cHHHH
Confidence 4788999999999999999999987654 44444
No 179
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.96 E-value=0.00062 Score=63.07 Aligned_cols=31 Identities=19% Similarity=0.309 Sum_probs=27.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHhCCceEE
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~elg~~~i~ 179 (465)
+..|.|.||||||||++++.+++.+|++++.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 4578999999999999999999999987665
No 180
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.93 E-value=0.0029 Score=63.70 Aligned_cols=35 Identities=14% Similarity=0.151 Sum_probs=30.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHhCCceEEeccc
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 183 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s 183 (465)
++.++|.||+|+|||++++.+|++++..++.++.-
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 56899999999999999999999999888876543
No 181
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.92 E-value=0.00062 Score=61.93 Aligned_cols=34 Identities=15% Similarity=0.184 Sum_probs=29.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHh-CCceEEec
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAKM-GINPIMMS 181 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~el-g~~~i~vs 181 (465)
.++.|.|.|+||+|||++++.+++.+ |++++.+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 46789999999999999999999998 57777654
No 182
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.91 E-value=0.0014 Score=62.90 Aligned_cols=32 Identities=16% Similarity=0.156 Sum_probs=25.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh---CCceEEec
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKM---GINPIMMS 181 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs 181 (465)
..|++.|+||+|||+++-.+|..+ |..++.+.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d 41 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGV 41 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEE
Confidence 568999999999999999888774 66665443
No 183
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.91 E-value=0.00055 Score=63.46 Aligned_cols=30 Identities=27% Similarity=0.391 Sum_probs=26.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEEe
Q 012383 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~elg~~~i~v 180 (465)
-|+|.|+||+|||++++.+++.+|+.++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 378999999999999999999999877665
No 184
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.89 E-value=0.00083 Score=60.25 Aligned_cols=31 Identities=19% Similarity=0.354 Sum_probs=27.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh---CCceEEec
Q 012383 151 ILGIWGGKGQGKSFQCELVFAKM---GINPIMMS 181 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~el---g~~~i~vs 181 (465)
.|+|.|+||+|||++++.+++.+ |++++...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 47899999999999999999998 88888764
No 185
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.87 E-value=0.0058 Score=60.85 Aligned_cols=72 Identities=17% Similarity=0.313 Sum_probs=45.7
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEeccccc--------------------ccCCCCChHHHHHHHHH
Q 012383 146 IKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGEL--------------------ESGNAGEPAKLIRQRYR 202 (465)
Q Consensus 146 ~~~p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~s~L--------------------~s~~~Ge~~k~Ir~~F~ 202 (465)
.+.|..++|.||+|+|||+++..+|..+ |..+..+..... .....+++.+.+...+.
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~ 180 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVA 180 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 4567899999999999999999999875 444544432211 01112333333333333
Q ss_pred HHHHHHHhCCceEEEeccc
Q 012383 203 EAADIIKKGKMCCLMINDL 221 (465)
Q Consensus 203 ~A~~~i~~~~p~ILfIDEI 221 (465)
.+ ....+.+|+||+.
T Consensus 181 ~a----~~~~~dvvIiDtp 195 (306)
T 1vma_A 181 HA----LARNKDVVIIDTA 195 (306)
T ss_dssp HH----HHTTCSEEEEEEC
T ss_pred HH----HhcCCCEEEEECC
Confidence 33 5667889999976
No 186
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.87 E-value=0.004 Score=56.07 Aligned_cols=39 Identities=10% Similarity=0.077 Sum_probs=30.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHhC---CceEEeccccc
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGEL 185 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~elg---~~~i~vs~s~L 185 (465)
..+..++|.|+||+|||++++.++..++ ..+..+++..+
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~ 52 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA 52 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH
Confidence 3467899999999999999999999874 44555555444
No 187
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.83 E-value=0.0054 Score=69.92 Aligned_cols=26 Identities=27% Similarity=0.289 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~e 172 (465)
..++.|.|+|++|+|||+||+.+++.
T Consensus 145 ~~~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 145 GEPGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp TSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence 34678999999999999999998876
No 188
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.82 E-value=0.00084 Score=60.87 Aligned_cols=33 Identities=33% Similarity=0.499 Sum_probs=28.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEec
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 181 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs 181 (465)
.|..|.|.|++|+|||++++.+++. |+.++...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d 39 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW-GYPVLDLD 39 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC-CCEEEccc
Confidence 3678999999999999999999998 87766533
No 189
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.81 E-value=0.00084 Score=61.54 Aligned_cols=29 Identities=31% Similarity=0.566 Sum_probs=25.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhCCceEE
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~elg~~~i~ 179 (465)
..+.|.||+|+|||++++.++. +|..++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id 31 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVD 31 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTCCEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCCcccc
Confidence 5688999999999999999988 8887765
No 190
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.80 E-value=0.00056 Score=61.23 Aligned_cols=34 Identities=29% Similarity=0.197 Sum_probs=26.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhC---CceEEeccc
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAG 183 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~elg---~~~i~vs~s 183 (465)
+.|+|.|+||+|||++++.+++.++ .++..++.+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~ 38 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYG 38 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECC
Confidence 3588999999999999999999876 335555443
No 191
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.79 E-value=0.00076 Score=61.65 Aligned_cols=30 Identities=23% Similarity=0.341 Sum_probs=26.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEEec
Q 012383 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMMS 181 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~elg~~~i~vs 181 (465)
.|.|.|++|+|||++++.+++ +|++++..+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 588999999999999999999 887776643
No 192
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.78 E-value=0.00089 Score=60.54 Aligned_cols=29 Identities=28% Similarity=0.391 Sum_probs=26.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEE
Q 012383 151 ILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~elg~~~i~ 179 (465)
.|.|.|+||+|||++++.+++.++..++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 47899999999999999999999986654
No 193
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.78 E-value=0.00063 Score=69.46 Aligned_cols=30 Identities=20% Similarity=0.162 Sum_probs=27.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhCCceEE
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~elg~~~i~ 179 (465)
..++|+||||+|||++++++|+.++.+|+.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 468999999999999999999999988855
No 194
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.77 E-value=0.001 Score=59.96 Aligned_cols=31 Identities=29% Similarity=0.373 Sum_probs=26.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh---CCceEEec
Q 012383 151 ILGIWGGKGQGKSFQCELVFAKM---GINPIMMS 181 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~el---g~~~i~vs 181 (465)
-|.|.|++|+|||++++.+++.+ |++++.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 47899999999999999999998 99887654
No 195
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.76 E-value=0.00097 Score=60.66 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=25.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHhCCc
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKMGIN 176 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~elg~~ 176 (465)
++.|+|.|+||+|||++++.+++.++..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 5679999999999999999999998874
No 196
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.76 E-value=0.0012 Score=60.15 Aligned_cols=31 Identities=29% Similarity=0.299 Sum_probs=28.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEEec
Q 012383 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMMS 181 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~elg~~~i~vs 181 (465)
.|.|.|++|+|||++++.+|..+|++++...
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccc
Confidence 7899999999999999999999998887643
No 197
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.75 E-value=0.001 Score=63.87 Aligned_cols=32 Identities=22% Similarity=0.247 Sum_probs=28.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHhCCceEE
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~elg~~~i~ 179 (465)
.|..+.|.||||+|||++++.+|+.+|+.++.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 36789999999999999999999999977655
No 198
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.74 E-value=0.00094 Score=62.63 Aligned_cols=30 Identities=33% Similarity=0.386 Sum_probs=26.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEEe
Q 012383 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~elg~~~i~v 180 (465)
-|+|.|+||+|||++++.+++.+|+.++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 478999999999999999999998765543
No 199
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.74 E-value=0.00051 Score=62.85 Aligned_cols=30 Identities=27% Similarity=0.193 Sum_probs=26.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHhCCc
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKMGIN 176 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~elg~~ 176 (465)
+.++.|+|.|+||+|||++++.+++.++..
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 346789999999999999999999987654
No 200
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.71 E-value=0.00096 Score=61.31 Aligned_cols=38 Identities=21% Similarity=0.273 Sum_probs=30.3
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHHHHh-CCceEEec
Q 012383 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKM-GINPIMMS 181 (465)
Q Consensus 144 ~~~~~p~glLL~GPPGtGKT~LAraIA~el-g~~~i~vs 181 (465)
+.++.+..+.|.|+||+|||++++.++..+ ++.++..+
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D 54 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQD 54 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGG
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCC
Confidence 355667889999999999999999999987 55555433
No 201
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.70 E-value=0.0015 Score=62.25 Aligned_cols=41 Identities=27% Similarity=0.579 Sum_probs=32.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHhCCce--------EEeccccccc
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINP--------IMMSAGELES 187 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~elg~~~--------i~vs~s~L~s 187 (465)
..|..|.|.|+||+|||++|+.++..+|+++ +.++...+..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~ 68 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYR 68 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBC
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccc
Confidence 4567899999999999999999999999763 3566666553
No 202
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.70 E-value=0.0031 Score=58.30 Aligned_cols=40 Identities=13% Similarity=0.125 Sum_probs=31.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHhC----CceEEecccccc
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKMG----INPIMMSAGELE 186 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~elg----~~~i~vs~s~L~ 186 (465)
..+..++|.|+||+|||++++.++..++ .+++.+++..+.
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r 66 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR 66 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHh
Confidence 4567899999999999999999999764 567777655443
No 203
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.68 E-value=0.0037 Score=59.35 Aligned_cols=33 Identities=12% Similarity=0.097 Sum_probs=27.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEEeccc
Q 012383 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 183 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s 183 (465)
.++|.||+|+|||.++.+++..++...+.+...
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 488999999999999999999887776665543
No 204
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.68 E-value=0.00053 Score=63.03 Aligned_cols=31 Identities=13% Similarity=-0.066 Sum_probs=23.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH---hCCceEEe
Q 012383 150 LILGIWGGKGQGKSFQCELVFAK---MGINPIMM 180 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~e---lg~~~i~v 180 (465)
+.++++||||+|||+++..++.. .|..++.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 57889999999999999666654 35555554
No 205
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.66 E-value=0.00064 Score=62.25 Aligned_cols=29 Identities=17% Similarity=0.160 Sum_probs=25.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHhCC
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKMGI 175 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~elg~ 175 (465)
+.|+.|+|.|+||+|||++++.+++.++.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34678999999999999999999998653
No 206
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.65 E-value=0.00085 Score=65.19 Aligned_cols=28 Identities=18% Similarity=0.169 Sum_probs=24.1
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHh
Q 012383 146 IKVPLILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 146 ~~~p~glLL~GPPGtGKT~LAraIA~el 173 (465)
+++...++|.||+|+|||++.++++...
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 3455678999999999999999999875
No 207
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.64 E-value=0.0021 Score=65.36 Aligned_cols=68 Identities=12% Similarity=0.147 Sum_probs=41.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhC----CceEEec-ccccc---------cCCCCChHHHHHHHHHHHHHHHHhCCceE
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKMG----INPIMMS-AGELE---------SGNAGEPAKLIRQRYREAADIIKKGKMCC 215 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~elg----~~~i~vs-~s~L~---------s~~~Ge~~k~Ir~~F~~A~~~i~~~~p~I 215 (465)
..++|.||+|+|||++.++++..+. ..++.+. ..++. ...++.....+...+..| -...|.+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~a----L~~~Pdv 199 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSA----LREDPDI 199 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHH----TTSCCSE
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHH----hhhCcCE
Confidence 4688999999999999999988752 3333221 11111 111122111222333333 5788999
Q ss_pred EEeccc
Q 012383 216 LMINDL 221 (465)
Q Consensus 216 LfIDEI 221 (465)
|++||+
T Consensus 200 illDEp 205 (356)
T 3jvv_A 200 ILVGEM 205 (356)
T ss_dssp EEESCC
T ss_pred EecCCC
Confidence 999998
No 208
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.63 E-value=0.0016 Score=60.26 Aligned_cols=32 Identities=34% Similarity=0.481 Sum_probs=27.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEe
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~elg~~~i~v 180 (465)
.|..|.|.|++|+|||++++.++. +|.+++..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 367899999999999999999998 88776654
No 209
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.60 E-value=0.0054 Score=64.29 Aligned_cols=70 Identities=16% Similarity=0.182 Sum_probs=48.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEeccccc-------------------ccC-CCCChHHHHHHHHHHH
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGEL-------------------ESG-NAGEPAKLIRQRYREA 204 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~s~L-------------------~s~-~~Ge~~k~Ir~~F~~A 204 (465)
+|..+++.|+||+|||+++..+|..+ |..+..+++... ... ....+...++..+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999998775 666666554321 111 1123444555555555
Q ss_pred HHHHHhCCceEEEeccc
Q 012383 205 ADIIKKGKMCCLMINDL 221 (465)
Q Consensus 205 ~~~i~~~~p~ILfIDEI 221 (465)
+.....+||||..
T Consensus 179 ----~~~~~DvVIIDTa 191 (443)
T 3dm5_A 179 ----KSKGVDIIIVDTA 191 (443)
T ss_dssp ----HHTTCSEEEEECC
T ss_pred ----HhCCCCEEEEECC
Confidence 6666889999976
No 210
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.58 E-value=0.0066 Score=60.19 Aligned_cols=38 Identities=16% Similarity=-0.110 Sum_probs=30.6
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEec
Q 012383 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMS 181 (465)
Q Consensus 144 ~~~~~p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs 181 (465)
.|+.+..-++|.|+||+|||+++..+|... |.++++++
T Consensus 63 gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s 103 (315)
T 3bh0_A 63 YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 103 (315)
T ss_dssp SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 577777889999999999999999988763 44555554
No 211
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=96.57 E-value=0.0031 Score=67.21 Aligned_cols=38 Identities=16% Similarity=0.350 Sum_probs=29.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHhC---CceEEeccccc
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGEL 185 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~elg---~~~i~vs~s~L 185 (465)
.|..|+|.|.||+|||++|+.+|..++ +....++..++
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~ 74 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEY 74 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHH
Confidence 467899999999999999999999984 44444554443
No 212
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.57 E-value=0.0016 Score=67.24 Aligned_cols=37 Identities=22% Similarity=0.186 Sum_probs=29.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEeccccc
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 185 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L 185 (465)
..|..|+|.|+||+|||++|+.++..+++.+ ++...+
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~~~~~--i~~D~~ 292 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSAGYVH--VNRDTL 292 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGGTCEE--CCGGGS
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhcCcEE--EccchH
Confidence 3467899999999999999999999987654 444444
No 213
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.56 E-value=0.0014 Score=60.61 Aligned_cols=32 Identities=16% Similarity=0.171 Sum_probs=28.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHhCCceEEe
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~elg~~~i~v 180 (465)
|..|.|.|++|||||++++.++..+|++++..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~ 34 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYVDT 34 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCceecC
Confidence 45789999999999999999999999877664
No 214
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.55 E-value=0.0024 Score=57.43 Aligned_cols=22 Identities=23% Similarity=0.246 Sum_probs=19.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHH
Q 012383 147 KVPLILGIWGGKGQGKSFQCEL 168 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAra 168 (465)
+.+..++|.||+|+|||+|+++
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHH
Confidence 4456799999999999999994
No 215
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.54 E-value=0.005 Score=62.39 Aligned_cols=35 Identities=23% Similarity=0.195 Sum_probs=30.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecc
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 182 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~ 182 (465)
.++.|+|.||+|+|||+|+..+|+.++..+|..+.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds 73 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDK 73 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCCCcEEcccc
Confidence 45689999999999999999999999987777543
No 216
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.54 E-value=0.004 Score=65.60 Aligned_cols=38 Identities=11% Similarity=-0.043 Sum_probs=31.0
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHHHHh----CCceEEecc
Q 012383 145 NIKVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSA 182 (465)
Q Consensus 145 ~~~~p~glLL~GPPGtGKT~LAraIA~el----g~~~i~vs~ 182 (465)
|+.+...++|.|+||+|||+++..+|... |.++++++.
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~ 279 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML 279 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence 67777789999999999999999988774 556666554
No 217
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.52 E-value=0.0021 Score=60.62 Aligned_cols=34 Identities=18% Similarity=0.229 Sum_probs=29.2
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEE
Q 012383 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (465)
Q Consensus 146 ~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~ 179 (465)
...+..|.|.|++|+|||++++.++..+|++++.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 3456789999999999999999999999987665
No 218
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.51 E-value=0.0015 Score=60.54 Aligned_cols=32 Identities=31% Similarity=0.631 Sum_probs=28.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhCCceEEec
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMMS 181 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~elg~~~i~vs 181 (465)
..|.|.|++|||||++++.+++.+|++++..+
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg~~vid~D 44 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYGAHVVNVD 44 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCEEEECc
Confidence 57889999999999999999999898877744
No 219
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.50 E-value=0.0048 Score=56.72 Aligned_cols=36 Identities=25% Similarity=0.311 Sum_probs=29.1
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEec
Q 012383 146 IKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMS 181 (465)
Q Consensus 146 ~~~p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs 181 (465)
...+..+.|.||+|+|||++++.++..+ +..++..+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~ 57 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFH 57 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEec
Confidence 4556789999999999999999999875 55555543
No 220
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.48 E-value=0.0022 Score=61.51 Aligned_cols=31 Identities=16% Similarity=0.312 Sum_probs=27.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHhCCceEE
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~elg~~~i~ 179 (465)
...|.|.||+|+|||++++.+|+.+|+.++.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 4578999999999999999999999987664
No 221
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=96.47 E-value=0.0045 Score=50.30 Aligned_cols=37 Identities=14% Similarity=0.105 Sum_probs=31.6
Q ss_pred CHHHHHHHHHHhccCC----CCChhHHHHHhcCCCchhhHH
Q 012383 299 TREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF 335 (465)
Q Consensus 299 ~~e~R~~Il~~~l~~~----~v~~~~la~lt~gfsgadld~ 335 (465)
+.++|.+|++.|+++. +++.+.|++.|+||||+||..
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~ 42 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRS 42 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHH
Confidence 5678999999999764 566789999999999999974
No 222
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.47 E-value=0.0018 Score=63.22 Aligned_cols=32 Identities=28% Similarity=0.289 Sum_probs=27.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEe
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~elg~~~i~v 180 (465)
.|..|.|.|+||+|||++|+.++ ++|++++..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La-~lg~~~id~ 105 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK-NLGAYIIDS 105 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH-HHTCEEEEH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH-HCCCcEEeh
Confidence 46789999999999999999999 688876654
No 223
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.42 E-value=0.011 Score=61.70 Aligned_cols=39 Identities=15% Similarity=-0.118 Sum_probs=31.5
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEecc
Q 012383 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 182 (465)
Q Consensus 144 ~~~~~p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~ 182 (465)
.|+.+..-++|.|+||+|||++|-.+|... |.++++++.
T Consensus 192 gGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 192 YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp SSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 377777889999999999999999888764 566666654
No 224
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.42 E-value=0.028 Score=60.66 Aligned_cols=71 Identities=10% Similarity=0.134 Sum_probs=44.7
Q ss_pred eEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCCCC--CCChhhhcCCCc
Q 012383 214 CCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFS--TLYAPLIRDGRM 291 (465)
Q Consensus 214 ~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~~~--~LD~ALlR~GRf 291 (465)
-+|+|||+..+..... ..+...|..|+. . ...-+|-+|++|.+|+ .|+..++. -|
T Consensus 345 ivvVIDE~~~L~~~~~---------~~~~~~L~~Iar---------~---GRa~GIhLIlaTQRPs~d~I~~~Ira--n~ 401 (574)
T 2iut_A 345 IVVVVDEFADMMMIVG---------KKVEELIARIAQ---------K---ARAAGIHLILATQRPSVDVITGLIKA--NI 401 (574)
T ss_dssp EEEEESCCTTHHHHTC---------HHHHHHHHHHHH---------H---CTTTTEEEEEEESCCCTTTSCHHHHH--TC
T ss_pred EEEEEeCHHHHhhhhh---------HHHHHHHHHHHH---------H---HhhCCeEEEEEecCcccccccHHHHh--hh
Confidence 5899999987754321 112223333322 1 3457899999999998 78877654 23
Q ss_pred eEEEe--CCCHHHHHHHH
Q 012383 292 EKFYW--APTREDRIGVC 307 (465)
Q Consensus 292 d~~i~--~P~~e~R~~Il 307 (465)
...+- ..+..+...|+
T Consensus 402 ~~RI~lrv~s~~Dsr~IL 419 (574)
T 2iut_A 402 PTRIAFQVSSKIDSRTIL 419 (574)
T ss_dssp CEEEEECCSCHHHHHHHH
T ss_pred ccEEEEEcCCHHHHHHhc
Confidence 33333 77888877776
No 225
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.42 E-value=0.0018 Score=62.90 Aligned_cols=31 Identities=32% Similarity=0.269 Sum_probs=25.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHh-CCceEE
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKM-GINPIM 179 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~el-g~~~i~ 179 (465)
|+.|+|.|+||+|||++++.++..+ ++.++.
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~ 33 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNIN 33 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcEEec
Confidence 5689999999999999999999974 654443
No 226
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.39 E-value=0.0021 Score=62.13 Aligned_cols=33 Identities=15% Similarity=0.136 Sum_probs=29.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHhCCceEEec
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 181 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs 181 (465)
...|.|.|++|+|||++++.+|..+|++++...
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d 80 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCD 80 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCc
Confidence 357999999999999999999999999877743
No 227
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.36 E-value=0.002 Score=58.50 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHh
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~el 173 (465)
.++..+.|.||+|+|||++++.++..+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 456789999999999999999999876
No 228
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.34 E-value=0.0028 Score=64.61 Aligned_cols=28 Identities=18% Similarity=0.169 Sum_probs=24.2
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHh
Q 012383 146 IKVPLILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 146 ~~~p~glLL~GPPGtGKT~LAraIA~el 173 (465)
+++...++|.||+|+|||++.++++...
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4555678999999999999999999875
No 229
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.33 E-value=0.0039 Score=57.59 Aligned_cols=29 Identities=21% Similarity=0.245 Sum_probs=25.5
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHhC
Q 012383 146 IKVPLILGIWGGKGQGKSFQCELVFAKMG 174 (465)
Q Consensus 146 ~~~p~glLL~GPPGtGKT~LAraIA~elg 174 (465)
.+.+..+.|.||+|+|||+|+++|+..+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45567899999999999999999999874
No 230
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.27 E-value=0.0027 Score=58.23 Aligned_cols=33 Identities=24% Similarity=0.526 Sum_probs=27.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHhC--CceEE
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKMG--INPIM 179 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~elg--~~~i~ 179 (465)
+.+..+.|.||+|+|||++++.++..++ +.++.
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~ 38 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLGERVALLP 38 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEE
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Confidence 4567899999999999999999999987 55444
No 231
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.26 E-value=0.0027 Score=58.40 Aligned_cols=28 Identities=21% Similarity=0.183 Sum_probs=25.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHhC
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKMG 174 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~elg 174 (465)
..++.++|.||||+|||++++.++..++
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 4567899999999999999999999874
No 232
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.24 E-value=0.0083 Score=62.70 Aligned_cols=35 Identities=23% Similarity=0.337 Sum_probs=28.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEecc
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 182 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~ 182 (465)
+|..+++.||+|+|||+++..+|..+ |..+..+.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~ 133 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAA 133 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 47899999999999999999998774 666666553
No 233
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.12 E-value=0.0046 Score=62.08 Aligned_cols=39 Identities=13% Similarity=0.169 Sum_probs=32.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEeccccc
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 185 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L 185 (465)
+.|+.++|.||+|+|||+||..+|+.++..++..+.-.+
T Consensus 8 ~~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qv 46 (316)
T 3foz_A 8 SLPKAIFLMGPTASGKTALAIELRKILPVELISVDSALI 46 (316)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTT
T ss_pred CCCcEEEEECCCccCHHHHHHHHHHhCCCcEEecccccc
Confidence 346789999999999999999999999887776654433
No 234
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.08 E-value=0.004 Score=63.01 Aligned_cols=38 Identities=11% Similarity=-0.040 Sum_probs=30.6
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHHHH---hCCceEEec
Q 012383 144 PNIKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMS 181 (465)
Q Consensus 144 ~~~~~p~glLL~GPPGtGKT~LAraIA~e---lg~~~i~vs 181 (465)
.|+.+..-++|.|+||+|||+++..+|.. .|.++.+++
T Consensus 41 gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS 81 (338)
T 4a1f_A 41 SGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS 81 (338)
T ss_dssp CSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred cCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 37777788999999999999999998877 356665544
No 235
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=96.03 E-value=0.0048 Score=57.33 Aligned_cols=30 Identities=17% Similarity=0.182 Sum_probs=28.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhCCceEE
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~elg~~~i~ 179 (465)
..|.|.||+|||||++++.+|+.+|++|+.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 478999999999999999999999999885
No 236
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.03 E-value=0.005 Score=55.52 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhC
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKMG 174 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~elg 174 (465)
..++|.||+|+|||++++.++...+
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~~ 27 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCcHHHHHHHHhcccC
Confidence 4578999999999999999998654
No 237
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.00 E-value=0.018 Score=61.23 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFA 171 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~ 171 (465)
.++.|.|+|++|+|||+||+.+++
T Consensus 151 ~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 151 DSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 468899999999999999999997
No 238
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.00 E-value=0.0041 Score=57.56 Aligned_cols=28 Identities=29% Similarity=0.330 Sum_probs=24.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHhC
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKMG 174 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~elg 174 (465)
+++..+.|.||+|+|||++++.++..+.
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3467899999999999999999999875
No 239
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.99 E-value=0.0047 Score=56.05 Aligned_cols=33 Identities=18% Similarity=0.189 Sum_probs=26.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecc
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 182 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~ 182 (465)
+...+.|.||+|+|||++++.++.... .+.+..
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~--~~~~~~ 38 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKALA--EIKISI 38 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSS--SEEECC
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC--CeEEec
Confidence 456789999999999999999998853 344443
No 240
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.97 E-value=0.0094 Score=59.82 Aligned_cols=39 Identities=36% Similarity=0.520 Sum_probs=32.2
Q ss_pred HHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhC
Q 012383 136 ITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMG 174 (465)
Q Consensus 136 i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg 174 (465)
+...++.....+.|..+.|.||+|||||+++++++..++
T Consensus 79 ~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 79 ATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred HHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 444555555567789999999999999999999999875
No 241
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.95 E-value=0.01 Score=58.59 Aligned_cols=38 Identities=24% Similarity=0.419 Sum_probs=29.8
Q ss_pred HHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhC
Q 012383 137 TKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMG 174 (465)
Q Consensus 137 ~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg 174 (465)
.+.++.......+..+.|.||+|+|||++++.++..++
T Consensus 68 ~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 68 LEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp HHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred HHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34455444456678899999999999999999999876
No 242
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.95 E-value=0.005 Score=55.58 Aligned_cols=26 Identities=19% Similarity=0.253 Sum_probs=23.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHhC
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKMG 174 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~elg 174 (465)
.+.+.|.||+|+|||+|++.++....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46789999999999999999998753
No 243
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.87 E-value=0.021 Score=62.33 Aligned_cols=38 Identities=16% Similarity=0.143 Sum_probs=33.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEeccccc
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGEL 185 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~s~L 185 (465)
.+..|+|.|.||+|||++|+++++.+ |.+++.+++..+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 46789999999999999999999998 999998875544
No 244
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.86 E-value=0.0056 Score=58.72 Aligned_cols=30 Identities=33% Similarity=0.471 Sum_probs=26.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEEe
Q 012383 151 ILGIWGGKGQGKSFQCELVFAKMGINPIMM 180 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~elg~~~i~v 180 (465)
-+.|.||||+|||++|+.+++.+|++.+.+
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 567889999999999999999998876643
No 245
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.82 E-value=0.0058 Score=61.94 Aligned_cols=34 Identities=24% Similarity=0.197 Sum_probs=28.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHhCCceEEecc
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 182 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~ 182 (465)
++.|+|.||+|+|||++|+.+|..++..++..+.
T Consensus 7 ~~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds 40 (340)
T 3d3q_A 7 PFLIVIVGPTASGKTELSIEVAKKFNGEIISGDS 40 (340)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTEEEEECCS
T ss_pred CceEEEECCCcCcHHHHHHHHHHHcCCceecccc
Confidence 3679999999999999999999999866665443
No 246
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.82 E-value=0.038 Score=58.56 Aligned_cols=38 Identities=11% Similarity=0.100 Sum_probs=27.6
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHH--HHHh--CCceEEecc
Q 012383 145 NIKVPLILGIWGGKGQGKSFQCELV--FAKM--GINPIMMSA 182 (465)
Q Consensus 145 ~~~~p~glLL~GPPGtGKT~LAraI--A~el--g~~~i~vs~ 182 (465)
++++...++|.||+|+|||+|++.+ +... +-.-+.+++
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g 76 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTF 76 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 5666788999999999999999994 4432 334444443
No 247
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.81 E-value=0.023 Score=60.42 Aligned_cols=36 Identities=19% Similarity=0.292 Sum_probs=28.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEecc
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 182 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~ 182 (465)
..|+.|+|.|+||+|||+++..+|..+ |..+..+++
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 457789999999999999999999775 666666655
No 248
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.81 E-value=0.0082 Score=63.38 Aligned_cols=24 Identities=25% Similarity=0.558 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~el 173 (465)
.-++|+||||+|||+|+..++...
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhh
Confidence 358899999999999999887764
No 249
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.73 E-value=0.0072 Score=57.28 Aligned_cols=32 Identities=34% Similarity=0.691 Sum_probs=26.4
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCc
Q 012383 145 NIKVPLILGIWGGKGQGKSFQCELVFAKMGIN 176 (465)
Q Consensus 145 ~~~~p~glLL~GPPGtGKT~LAraIA~elg~~ 176 (465)
.++.+..+.|.||+|+|||++++.++..+|..
T Consensus 21 ~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 21 QSMRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp --CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 44556779999999999999999999988754
No 250
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.72 E-value=0.0055 Score=55.52 Aligned_cols=26 Identities=31% Similarity=0.308 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHhC
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKMG 174 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~elg 174 (465)
|+.+.|.||+|+|||++++.++..+.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35688999999999999999998753
No 251
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=95.71 E-value=0.013 Score=46.67 Aligned_cols=37 Identities=22% Similarity=0.225 Sum_probs=32.0
Q ss_pred CHHHHHHHHHHhccCC----CCChhHHHHHhcCCCchhhHH
Q 012383 299 TREDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF 335 (465)
Q Consensus 299 ~~e~R~~Il~~~l~~~----~v~~~~la~lt~gfsgadld~ 335 (465)
+.++|.+||+.++++. +++.+.|++.|+||||+||..
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~ 42 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINS 42 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHH
Confidence 6789999999999764 456779999999999999974
No 252
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.69 E-value=0.0082 Score=60.37 Aligned_cols=35 Identities=14% Similarity=0.134 Sum_probs=29.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHhCCceEEeccc
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 183 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s 183 (465)
++.|+|.||+|+|||+|+..+|+.++..++..+.-
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 45788999999999999999999998766655443
No 253
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.66 E-value=0.0096 Score=59.68 Aligned_cols=69 Identities=13% Similarity=0.100 Sum_probs=43.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHhCC--ceEEeccccccc-----C---CC-CChHHHHHHHHHHHHHHHHhCCceEEE
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAGELES-----G---NA-GEPAKLIRQRYREAADIIKKGKMCCLM 217 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~elg~--~~i~vs~s~L~s-----~---~~-Ge~~k~Ir~~F~~A~~~i~~~~p~ILf 217 (465)
...++|.||+|+|||++.++++..... ..+.+....... . ++ | .....+..+..| -...|.+|+
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~g-gg~~~r~~la~a----L~~~p~ili 245 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFG-GNITSADCLKSC----LRMRPDRII 245 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECB-TTBCHHHHHHHH----TTSCCSEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeC-CChhHHHHHHHH----hhhCCCEEE
Confidence 357899999999999999999988542 344444321110 0 11 0 111223444445 567899999
Q ss_pred ecccc
Q 012383 218 INDLD 222 (465)
Q Consensus 218 IDEID 222 (465)
+||.-
T Consensus 246 ldE~~ 250 (330)
T 2pt7_A 246 LGELR 250 (330)
T ss_dssp ECCCC
T ss_pred EcCCC
Confidence 99984
No 254
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=95.64 E-value=0.019 Score=61.53 Aligned_cols=63 Identities=14% Similarity=0.063 Sum_probs=41.9
Q ss_pred CCCchhHHHHHHHHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhC---CceEEeccccc
Q 012383 122 LYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGEL 185 (465)
Q Consensus 122 ~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg---~~~i~vs~s~L 185 (465)
..+|+.|+-.-+..+.+.+.... .+.+..|+|.|+||+|||++|+.+++.++ .++..+++..+
T Consensus 346 ~~~p~~~~r~eV~~~lr~~~~~~-~~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~i 411 (546)
T 2gks_A 346 RKLPEWFTRPEVAEILAETYVPK-HKQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVV 411 (546)
T ss_dssp CCCCTTTSCHHHHHHHHHHSCCG-GGCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHH
T ss_pred CCCCccccchhHHHHHHHhhccc-cccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHh
Confidence 33455554334455666655322 23457899999999999999999999864 45666665544
No 255
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.57 E-value=0.017 Score=56.82 Aligned_cols=30 Identities=30% Similarity=0.496 Sum_probs=26.5
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHHHHhC
Q 012383 145 NIKVPLILGIWGGKGQGKSFQCELVFAKMG 174 (465)
Q Consensus 145 ~~~~p~glLL~GPPGtGKT~LAraIA~elg 174 (465)
..+.|..|.|.||+|+|||++++.++..++
T Consensus 27 ~~~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 27 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 445688999999999999999999999875
No 256
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=95.56 E-value=0.0091 Score=56.70 Aligned_cols=31 Identities=23% Similarity=0.229 Sum_probs=28.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHhCCceEE
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~elg~~~i~ 179 (465)
...|.|.|++|||||++++.+|+.+|++++.
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 4689999999999999999999999999865
No 257
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.50 E-value=0.01 Score=61.47 Aligned_cols=34 Identities=24% Similarity=0.136 Sum_probs=29.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEec
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 181 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs 181 (465)
|++.|+|.||+|+|||+|+..+|..++..++..+
T Consensus 1 ~~~~i~i~GptgsGKttla~~La~~~~~~iis~D 34 (409)
T 3eph_A 1 SKKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSD 34 (409)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHHHHTEEEEECC
T ss_pred CCcEEEEECcchhhHHHHHHHHHHHCCCeEeecC
Confidence 4567899999999999999999999987766543
No 258
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.44 E-value=0.012 Score=55.74 Aligned_cols=34 Identities=21% Similarity=0.320 Sum_probs=27.7
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHhC--CceEE
Q 012383 146 IKVPLILGIWGGKGQGKSFQCELVFAKMG--INPIM 179 (465)
Q Consensus 146 ~~~p~glLL~GPPGtGKT~LAraIA~elg--~~~i~ 179 (465)
...++-|.|.||||+|||++++.+++.++ ..++.
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~ 58 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIM 58 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEE
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCcee
Confidence 34567788999999999999999999986 44443
No 259
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.39 E-value=0.044 Score=56.75 Aligned_cols=76 Identities=11% Similarity=0.135 Sum_probs=44.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHh-----CCceEEeccc---------------ccccCCCCCh-HHHHHHH---HHHH
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAG---------------ELESGNAGEP-AKLIRQR---YREA 204 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~el-----g~~~i~vs~s---------------~L~s~~~Ge~-~k~Ir~~---F~~A 204 (465)
-.-++|.||+|||||+|++.|++.. ++..+++-.+ .+......++ ...++.. ...|
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIGER~~Ev~~~~~~~~~~vV~atadep~~~r~~~a~~alt~A 253 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKA 253 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESSCHHHHHHHHTTCSSEEEEECTTSCHHHHHHHHHHHHHHH
T ss_pred CcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEecCChHHHHHHHHHhCeEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 3568999999999999999998864 3434433111 1111122232 2222211 1223
Q ss_pred HHHHHhCCceEEEecccccc
Q 012383 205 ADIIKKGKMCCLMINDLDAG 224 (465)
Q Consensus 205 ~~~i~~~~p~ILfIDEIDai 224 (465)
......++..+||+|++-..
T Consensus 254 Eyfrd~G~dVLil~DslTR~ 273 (422)
T 3ice_A 254 KRLVEHKKDVIILLDSITRL 273 (422)
T ss_dssp HHHHHTSCEEEEEEECHHHH
T ss_pred HHHHhcCCCEEEEEeCchHH
Confidence 22233788899999998765
No 260
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.38 E-value=0.055 Score=63.77 Aligned_cols=30 Identities=20% Similarity=0.294 Sum_probs=25.3
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHHHHhC
Q 012383 145 NIKVPLILGIWGGKGQGKSFQCELVFAKMG 174 (465)
Q Consensus 145 ~~~~p~glLL~GPPGtGKT~LAraIA~elg 174 (465)
.+++-.-+.|.||.|+|||+|++++.....
T Consensus 440 ~i~~G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 440 RVNAGQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp EECTTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred eecCCcEEEEEecCCCcHHHHHHHhccccc
Confidence 345556889999999999999999998754
No 261
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.32 E-value=0.012 Score=62.67 Aligned_cols=54 Identities=13% Similarity=-0.042 Sum_probs=39.9
Q ss_pred CCCCchhHHHHHHHHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCC
Q 012383 121 GLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI 175 (465)
Q Consensus 121 ~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~ 175 (465)
+..+|+.|+-.-+..+.+.+.... .+.+..|.|.|.+|||||++++++|+.++.
T Consensus 368 G~~~P~~f~rpeV~~vLr~~~~~~-~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 368 GGEIPEWFSYPEVVKILRESNPPR-PKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp TCCCCTTTSCHHHHHHHHHHSCCG-GGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred CCCCCccccChhhHHHHHHhcccc-cccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 344566676666666776665322 234568899999999999999999999985
No 262
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.31 E-value=0.011 Score=54.50 Aligned_cols=30 Identities=17% Similarity=0.136 Sum_probs=24.0
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHHHHhC
Q 012383 145 NIKVPLILGIWGGKGQGKSFQCELVFAKMG 174 (465)
Q Consensus 145 ~~~~p~glLL~GPPGtGKT~LAraIA~elg 174 (465)
.++....+.|.||+|+|||+|+++|+..+.
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 345556789999999999999999999863
No 263
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.30 E-value=0.0091 Score=54.92 Aligned_cols=27 Identities=26% Similarity=0.294 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHhC
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAKMG 174 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~elg 174 (465)
+++.+.|.||+|+|||+|++.++....
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 456789999999999999999998753
No 264
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.27 E-value=0.0087 Score=57.75 Aligned_cols=29 Identities=21% Similarity=0.224 Sum_probs=24.7
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHHHHh
Q 012383 145 NIKVPLILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 145 ~~~~p~glLL~GPPGtGKT~LAraIA~el 173 (465)
|++....++|+||||+|||+|+..++..+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 55556789999999999999999998753
No 265
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.26 E-value=0.05 Score=56.65 Aligned_cols=37 Identities=19% Similarity=0.220 Sum_probs=30.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHh----CCceEEeccc
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSAG 183 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~el----g~~~i~vs~s 183 (465)
++|+.|++.|++|+|||+++..+|..+ |..+..+++.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D 138 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSAD 138 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 457899999999999999999998774 7777776654
No 266
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.24 E-value=0.0094 Score=56.26 Aligned_cols=34 Identities=24% Similarity=0.052 Sum_probs=27.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHhCCceEEeccc
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 183 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s 183 (465)
.++++|.||+|+|||+||..+++..+ .++..+.-
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs~ 67 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADDRV 67 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecchh
Confidence 47899999999999999999998865 55554433
No 267
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=95.23 E-value=0.046 Score=58.92 Aligned_cols=39 Identities=8% Similarity=0.055 Sum_probs=32.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHhC----CceEEeccccc
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKMG----INPIMMSAGEL 185 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~elg----~~~i~vs~s~L 185 (465)
..+..|+|.|+||+|||++|+++++.++ .+++.++...+
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~i 436 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTV 436 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHH
Confidence 4467899999999999999999999986 77777776554
No 268
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.23 E-value=0.0065 Score=55.48 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhC
Q 012383 151 ILGIWGGKGQGKSFQCELVFAKMG 174 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~elg 174 (465)
.|.|.|++|+|||++++.++..++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999975
No 269
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.20 E-value=0.029 Score=58.58 Aligned_cols=29 Identities=14% Similarity=0.320 Sum_probs=25.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHhCC
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKMGI 175 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~elg~ 175 (465)
..|.-|+|.|.||+|||++++.++..++.
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~ 65 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNF 65 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 34678999999999999999999998754
No 270
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.17 E-value=0.012 Score=56.96 Aligned_cols=38 Identities=16% Similarity=0.074 Sum_probs=29.9
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHHHHh----CCceEEec
Q 012383 144 PNIKVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMS 181 (465)
Q Consensus 144 ~~~~~p~glLL~GPPGtGKT~LAraIA~el----g~~~i~vs 181 (465)
.++++...++|.||||+|||+|++.+|..+ |..++.++
T Consensus 30 ~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 30 LGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp CSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 466777889999999999999999998874 44454443
No 271
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=95.17 E-value=0.015 Score=52.74 Aligned_cols=24 Identities=17% Similarity=0.031 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~el 173 (465)
+.+++++|+|+|||+++-.++.++
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 468999999999999998877653
No 272
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.16 E-value=0.045 Score=54.04 Aligned_cols=34 Identities=21% Similarity=0.309 Sum_probs=27.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEecc
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 182 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~ 182 (465)
+..+++.|++|+|||+++..+|..+ |..+..+..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~ 134 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGA 134 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEec
Confidence 7788999999999999999999775 555555443
No 273
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.12 E-value=0.011 Score=55.17 Aligned_cols=29 Identities=21% Similarity=0.248 Sum_probs=23.4
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHHHHh
Q 012383 145 NIKVPLILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 145 ~~~~p~glLL~GPPGtGKT~LAraIA~el 173 (465)
.+++...+.|.||+|+|||+|+++++...
T Consensus 19 ~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 19 SMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ---CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred ecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34455678999999999999999999976
No 274
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.10 E-value=0.017 Score=51.82 Aligned_cols=29 Identities=14% Similarity=0.249 Sum_probs=25.0
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHHHHh
Q 012383 145 NIKVPLILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 145 ~~~~p~glLL~GPPGtGKT~LAraIA~el 173 (465)
.+++...+.|.||.|+|||+|.++++..+
T Consensus 29 ~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34555678999999999999999999987
No 275
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.09 E-value=0.0086 Score=58.88 Aligned_cols=37 Identities=14% Similarity=0.214 Sum_probs=25.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHhC---CceEEeccccc
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGEL 185 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~elg---~~~i~vs~s~L 185 (465)
+..|.|.||+|+|||++|+.+++.++ ..+..++...+
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~ 44 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF 44 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchh
Confidence 55799999999999999999999876 44455554444
No 276
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.07 E-value=0.015 Score=63.25 Aligned_cols=33 Identities=18% Similarity=0.307 Sum_probs=22.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH---hCCceEEeccc
Q 012383 151 ILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAG 183 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~e---lg~~~i~vs~s 183 (465)
-.|++||||||||+++-.+..+ .+..++.++.+
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~T 242 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPS 242 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCc
Confidence 5689999999999765544443 35566666554
No 277
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=95.02 E-value=0.094 Score=59.62 Aligned_cols=26 Identities=23% Similarity=0.043 Sum_probs=21.7
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHH
Q 012383 146 IKVPLILGIWGGKGQGKSFQCELVFA 171 (465)
Q Consensus 146 ~~~p~glLL~GPPGtGKT~LAraIA~ 171 (465)
+.....++|.||.|+|||++.+.|+.
T Consensus 670 ~~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 670 EDSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp TTSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCchHHHHHHHHH
Confidence 33446789999999999999999874
No 278
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.01 E-value=0.017 Score=54.44 Aligned_cols=27 Identities=30% Similarity=0.247 Sum_probs=24.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHh-CC
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKM-GI 175 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~el-g~ 175 (465)
|+-|.|.|++|+|||++++.+++.+ +.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~~~ 29 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYPEW 29 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCTTS
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 6779999999999999999999998 44
No 279
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.01 E-value=0.033 Score=52.11 Aligned_cols=36 Identities=19% Similarity=-0.030 Sum_probs=28.7
Q ss_pred CCeEEEEEcCCCCcHH-HHHHHHHHH--hCCceEEeccc
Q 012383 148 VPLILGIWGGKGQGKS-FQCELVFAK--MGINPIMMSAG 183 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT-~LAraIA~e--lg~~~i~vs~s 183 (465)
.-+..++|||.|+||| .|.+++.+. .+..++.+++.
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccc
Confidence 3478899999999999 999998876 46677777643
No 280
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=95.00 E-value=0.12 Score=54.98 Aligned_cols=40 Identities=5% Similarity=0.139 Sum_probs=28.4
Q ss_pred CCceEEEEeCCCC--CCChhhhcCCCceE-EEe-CCCHHHHHHHHH
Q 012383 267 PRVPIIVTGNDFS--TLYAPLIRDGRMEK-FYW-APTREDRIGVCK 308 (465)
Q Consensus 267 ~~V~VI~TTN~~~--~LD~ALlR~GRfd~-~i~-~P~~e~R~~Il~ 308 (465)
-++.+|++|.+++ .|+..++. -+.. +.. ..+..+...|+.
T Consensus 331 ~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv~s~~dsr~ilg 374 (512)
T 2ius_A 331 AGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTVSSKIDSRTILD 374 (512)
T ss_dssp GTEEEEEEESCCCTTTSCHHHHH--HCCEEEEECCSSHHHHHHHHS
T ss_pred CCcEEEEEecCCccccccHHHHh--hcCCeEEEEcCCHHHHHHhcC
Confidence 4789999999998 57766554 3433 333 888888888763
No 281
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.95 E-value=0.07 Score=53.48 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=24.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHh
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~el 173 (465)
++|..+.|.||+|+|||++++.+|..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 567899999999999999999999875
No 282
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.94 E-value=0.09 Score=52.79 Aligned_cols=33 Identities=27% Similarity=0.276 Sum_probs=26.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEe
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMM 180 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~el---g~~~i~v 180 (465)
.+..|.|.|+||+|||+++..++..+ |..+..+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi 113 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVL 113 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEE
Confidence 45678999999999999999998875 5544443
No 283
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.93 E-value=0.075 Score=52.22 Aligned_cols=33 Identities=18% Similarity=0.240 Sum_probs=26.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEe
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMM 180 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~el---g~~~i~v 180 (465)
.++.+.+.|++|+|||+++..+|..+ +..+..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~ 132 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLV 132 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 56788899999999999999998874 4444443
No 284
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.93 E-value=0.018 Score=57.26 Aligned_cols=29 Identities=31% Similarity=0.489 Sum_probs=26.0
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHhC
Q 012383 146 IKVPLILGIWGGKGQGKSFQCELVFAKMG 174 (465)
Q Consensus 146 ~~~p~glLL~GPPGtGKT~LAraIA~elg 174 (465)
++.+..+.|.||+|+|||+|++.|+..+.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 56778899999999999999999999763
No 285
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.88 E-value=0.027 Score=52.04 Aligned_cols=26 Identities=31% Similarity=0.294 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCc
Q 012383 151 ILGIWGGKGQGKSFQCELVFAKMGIN 176 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~elg~~ 176 (465)
-|+|.||+|+|||+|++.+..+..-.
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~~ 28 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPDS 28 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCC
Confidence 37899999999999999998886433
No 286
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.85 E-value=0.027 Score=52.63 Aligned_cols=26 Identities=19% Similarity=0.250 Sum_probs=23.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHhC
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKMG 174 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~elg 174 (465)
++.+.|.||+|+|||+|+++++....
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 56788999999999999999998864
No 287
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.79 E-value=0.0098 Score=55.56 Aligned_cols=28 Identities=21% Similarity=0.231 Sum_probs=18.0
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHH-HHh
Q 012383 146 IKVPLILGIWGGKGQGKSFQCELVF-AKM 173 (465)
Q Consensus 146 ~~~p~glLL~GPPGtGKT~LAraIA-~el 173 (465)
+++...+.|.||+|+|||++++.++ ...
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp EECCCEEEEECSCC----CHHHHHHC---
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3445678999999999999999999 765
No 288
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=94.75 E-value=0.14 Score=58.29 Aligned_cols=22 Identities=23% Similarity=0.001 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 012383 150 LILGIWGGKGQGKSFQCELVFA 171 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~ 171 (465)
..++|.||.|+|||++.+.|+.
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999999843
No 289
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.75 E-value=0.0088 Score=57.21 Aligned_cols=31 Identities=16% Similarity=0.035 Sum_probs=26.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHh-CCce
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKM-GINP 177 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~el-g~~~ 177 (465)
+.++-|.|.|++|+|||++++.+++.+ +..+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~ 53 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCEDWEV 53 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCTTEEE
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 456789999999999999999999998 4433
No 290
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=94.72 E-value=0.059 Score=55.96 Aligned_cols=71 Identities=11% Similarity=0.025 Sum_probs=48.8
Q ss_pred ceEEEecccccccCCCCCCcccchhhHHHHHHHHHhhcCCccccCCCccccCCCCCceEEEEeCC-------------CC
Q 012383 213 MCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGND-------------FS 279 (465)
Q Consensus 213 p~ILfIDEIDai~~~r~~~~~~~v~~~~v~~~Ll~llD~~~~v~l~g~~~~~~~~~V~VI~TTN~-------------~~ 279 (465)
|.|+||||+|.+. ......|+..+. ++...+ +|.+||. +.
T Consensus 296 ~~VliIDEa~~l~-------------~~a~~aLlk~lE-------------e~~~~~-~il~tn~~~~~i~~~~~~~~~~ 348 (456)
T 2c9o_A 296 PGVLFVDEVHMLD-------------IECFTYLHRALE-------------SSIAPI-VIFASNRGNCVIRGTEDITSPH 348 (456)
T ss_dssp ECEEEEESGGGCB-------------HHHHHHHHHHTT-------------STTCCE-EEEEECCSEEECBTTSSCEEET
T ss_pred ceEEEEechhhcC-------------HHHHHHHHHHhh-------------ccCCCE-EEEecCCccccccccccccccc
Confidence 4699999999762 223445555655 333444 4444433 77
Q ss_pred CCChhhhcCCCceEEEe-CCCHHHHHHHHHHhcc
Q 012383 280 TLYAPLIRDGRMEKFYW-APTREDRIGVCKGIFR 312 (465)
Q Consensus 280 ~LD~ALlR~GRfd~~i~-~P~~e~R~~Il~~~l~ 312 (465)
.|++.++. ||..+.. .|+.++..+|++....
T Consensus 349 ~l~~~i~s--R~~~~~~~~~~~~e~~~iL~~~~~ 380 (456)
T 2c9o_A 349 GIPLDLLD--RVMIIRTMLYTPQEMKQIIKIRAQ 380 (456)
T ss_dssp TCCHHHHT--TEEEEECCCCCHHHHHHHHHHHHH
T ss_pred cCChhHHh--hcceeeCCCCCHHHHHHHHHHHHH
Confidence 89999986 7777544 8899999999987764
No 291
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.70 E-value=0.046 Score=54.10 Aligned_cols=28 Identities=21% Similarity=0.370 Sum_probs=25.2
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHh
Q 012383 146 IKVPLILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 146 ~~~p~glLL~GPPGtGKT~LAraIA~el 173 (465)
++.+..++|.||+|+|||++++.+|..+
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4567889999999999999999999875
No 292
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.66 E-value=0.023 Score=56.64 Aligned_cols=29 Identities=24% Similarity=0.343 Sum_probs=25.8
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHHHHh
Q 012383 145 NIKVPLILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 145 ~~~~p~glLL~GPPGtGKT~LAraIA~el 173 (465)
.+++...+.|.||+|+|||+|+++|+..+
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 45666789999999999999999999987
No 293
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=94.65 E-value=0.15 Score=56.90 Aligned_cols=23 Identities=22% Similarity=-0.013 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 012383 150 LILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~e 172 (465)
..++|.||.|+|||++.+.|+.-
T Consensus 577 ~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 577 ELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp CEEEEESCSSSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHhh
Confidence 46889999999999999998864
No 294
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.64 E-value=0.015 Score=61.79 Aligned_cols=69 Identities=10% Similarity=0.127 Sum_probs=42.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHhCC--ceEEecccc-cccC-----------CCCChHHHHHHHHHHHHHHHHhCCce
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAGE-LESG-----------NAGEPAKLIRQRYREAADIIKKGKMC 214 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~elg~--~~i~vs~s~-L~s~-----------~~Ge~~k~Ir~~F~~A~~~i~~~~p~ 214 (465)
..+++|.||+|+|||++.++++..+.- ..+.+.... +.-. ..+...-.+....+.+ -...|.
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~----LR~~PD 335 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAA----LRQRPD 335 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTT----GGGCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHh----hccCCC
Confidence 457999999999999999999988642 344443322 2100 0111111122333333 456899
Q ss_pred EEEeccc
Q 012383 215 CLMINDL 221 (465)
Q Consensus 215 ILfIDEI 221 (465)
++++.|+
T Consensus 336 ~iivgEi 342 (511)
T 2oap_1 336 YIIVGEV 342 (511)
T ss_dssp EEEESCC
T ss_pred eEEeCCc
Confidence 9999997
No 295
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.60 E-value=0.019 Score=53.01 Aligned_cols=32 Identities=19% Similarity=0.339 Sum_probs=28.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCceEEecccc
Q 012383 152 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE 184 (465)
Q Consensus 152 lLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~ 184 (465)
+|++|++|+|||++|+.++.. +.+.+++..+.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 789999999999999999988 88888877654
No 296
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=94.56 E-value=0.2 Score=56.19 Aligned_cols=24 Identities=25% Similarity=0.018 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHH
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~e 172 (465)
...++|.||.|+|||++.++|+.-
T Consensus 607 g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 607 RRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHHH
Confidence 357899999999999999999865
No 297
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=94.49 E-value=0.025 Score=53.42 Aligned_cols=31 Identities=29% Similarity=0.469 Sum_probs=27.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhCCceEEec
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKMGINPIMMS 181 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~elg~~~i~vs 181 (465)
-.|.|+|..|||||++++.++. +|++++..+
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~vidaD 40 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDTD 40 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcEEECc
Confidence 4789999999999999999987 998888754
No 298
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.45 E-value=0.019 Score=59.62 Aligned_cols=23 Identities=17% Similarity=0.338 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 012383 151 ILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~el 173 (465)
.++|.||||||||+++.+++..+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999886
No 299
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.42 E-value=0.037 Score=57.38 Aligned_cols=25 Identities=24% Similarity=0.226 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhC
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKMG 174 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~elg 174 (465)
..++|.||+|+|||++.++++..+.
T Consensus 168 gii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred CeEEEECCCCCCHHHHHHHHHhhcC
Confidence 4578999999999999999999874
No 300
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.36 E-value=0.027 Score=53.05 Aligned_cols=28 Identities=14% Similarity=0.081 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHhC
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKMG 174 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~elg 174 (465)
+....+.|.||+|+|||+|.++++....
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 4456889999999999999999999864
No 301
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.26 E-value=0.026 Score=52.02 Aligned_cols=23 Identities=17% Similarity=0.094 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 012383 151 ILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~el 173 (465)
.+.|.||+|+|||++.+.++..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 47899999999999999999986
No 302
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.23 E-value=0.099 Score=49.53 Aligned_cols=32 Identities=22% Similarity=0.101 Sum_probs=24.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH---hCCceEEec
Q 012383 150 LILGIWGGKGQGKSFQCELVFAK---MGINPIMMS 181 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~e---lg~~~i~vs 181 (465)
+..+++||.|+|||+.+-.++.. .|..++.+.
T Consensus 29 ~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 29 WIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 56668999999999888877665 366777665
No 303
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.20 E-value=0.068 Score=54.34 Aligned_cols=28 Identities=21% Similarity=0.370 Sum_probs=25.2
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHh
Q 012383 146 IKVPLILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 146 ~~~p~glLL~GPPGtGKT~LAraIA~el 173 (465)
++++..++|.||+|+|||++++.+|..+
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 4567889999999999999999999875
No 304
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.09 E-value=0.033 Score=49.56 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhC
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKMG 174 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~elg 174 (465)
...+|+||.|+|||++.++|+..++
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHc
Confidence 3678999999999999999998775
No 305
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=94.01 E-value=0.041 Score=63.52 Aligned_cols=24 Identities=25% Similarity=0.116 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHH
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~e 172 (465)
.+.+.|+||+|.|||+||+.+++.
T Consensus 150 ~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 150 AKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp SCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCccHHHHHHHHHHh
Confidence 578999999999999999999864
No 306
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=93.99 E-value=0.067 Score=50.82 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHH
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~e 172 (465)
.+.-|+|.|.||+|||+|..++...
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCcHHHHHHHHhCC
Confidence 3567999999999999999998765
No 307
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.99 E-value=0.04 Score=54.59 Aligned_cols=26 Identities=15% Similarity=0.057 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHh
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~el 173 (465)
.+..+.|.||+|+|||++++.+|..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46789999999999999999999875
No 308
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=93.95 E-value=0.031 Score=60.24 Aligned_cols=34 Identities=24% Similarity=0.341 Sum_probs=26.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHH---hCCceEEecc
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSA 182 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~e---lg~~~i~vs~ 182 (465)
...++|.||||||||+++.+++.. .|..++.+..
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~Ap 240 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAP 240 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecC
Confidence 357899999999999999998876 3566665543
No 309
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.95 E-value=0.083 Score=56.13 Aligned_cols=29 Identities=21% Similarity=0.312 Sum_probs=25.6
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHHHHh
Q 012383 145 NIKVPLILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 145 ~~~~p~glLL~GPPGtGKT~LAraIA~el 173 (465)
.++.+..++|.||+|+|||++++.||..+
T Consensus 289 ~i~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 289 EGKAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp CSCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 45667889999999999999999999875
No 310
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.88 E-value=0.042 Score=50.10 Aligned_cols=25 Identities=16% Similarity=0.183 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHh
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~el 173 (465)
...+.|.|++|+|||++++.+...+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 4578999999999999999998874
No 311
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=93.72 E-value=0.14 Score=51.14 Aligned_cols=28 Identities=25% Similarity=0.267 Sum_probs=24.1
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHh
Q 012383 146 IKVPLILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 146 ~~~p~glLL~GPPGtGKT~LAraIA~el 173 (465)
+.....+.|.||||+|||+|.++++..+
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 4556789999999999999999999764
No 312
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.68 E-value=0.053 Score=50.10 Aligned_cols=29 Identities=21% Similarity=0.150 Sum_probs=24.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhCCceEE
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~elg~~~i~ 179 (465)
+|+||.|++|+|||++|.++... |..++.
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r-G~~lva 45 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR-GHQLVC 45 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT-TCEEEE
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc-CCeEec
Confidence 69999999999999999999874 554443
No 313
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.61 E-value=0.036 Score=53.02 Aligned_cols=28 Identities=25% Similarity=0.249 Sum_probs=24.0
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHHHHh
Q 012383 145 NIKVPLILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 145 ~~~~p~glLL~GPPGtGKT~LAraIA~el 173 (465)
.+++ ..+.|.||.|+|||+|.++++.-.
T Consensus 21 ~i~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 21 EMGR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EECS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EECC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 3455 688999999999999999999764
No 314
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=93.60 E-value=0.13 Score=53.74 Aligned_cols=27 Identities=15% Similarity=0.051 Sum_probs=22.1
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHH
Q 012383 146 IKVPLILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 146 ~~~p~glLL~GPPGtGKT~LAraIA~e 172 (465)
....+..++.|+||||||++...++..
T Consensus 158 ~~~~~v~~I~G~aGsGKTt~I~~~~~~ 184 (446)
T 3vkw_A 158 VSSAKVVLVDGVPGCGKTKEILSRVNF 184 (446)
T ss_dssp CCCSEEEEEEECTTSCHHHHHHHHCCT
T ss_pred cccccEEEEEcCCCCCHHHHHHHHhcc
Confidence 344578899999999999999887753
No 315
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.59 E-value=0.073 Score=50.22 Aligned_cols=31 Identities=26% Similarity=0.339 Sum_probs=26.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHhCCceE
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAKMGINPI 178 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~elg~~~i 178 (465)
..+-|.|.|++|+|||++++.+++.++....
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~~~~ 34 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQPNCK 34 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCSSEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccce
Confidence 3567889999999999999999999987433
No 316
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.59 E-value=0.048 Score=49.71 Aligned_cols=33 Identities=21% Similarity=0.082 Sum_probs=26.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEec
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMS 181 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs 181 (465)
.+.+.|.|++|+|||+++..++..+ |..+..++
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 4578999999999999999999875 45554444
No 317
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.56 E-value=0.055 Score=51.45 Aligned_cols=34 Identities=15% Similarity=0.242 Sum_probs=24.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHh-------CCceEEec
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAKM-------GINPIMMS 181 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~el-------g~~~i~vs 181 (465)
..+-|.|.||+|+|||++++.+++.+ |..++.+.
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~r 64 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTR 64 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeec
Confidence 34678889999999999999999987 66655443
No 318
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=93.52 E-value=0.047 Score=53.84 Aligned_cols=36 Identities=14% Similarity=0.158 Sum_probs=28.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHh----CCceEEecc
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSA 182 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~el----g~~~i~vs~ 182 (465)
..+..++|.||+|+|||+++..+|..+ |..+..+..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~ 142 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITT 142 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 356789999999999999999998764 545555543
No 319
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.50 E-value=0.053 Score=50.86 Aligned_cols=33 Identities=24% Similarity=0.415 Sum_probs=26.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEec
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMS 181 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs 181 (465)
.+-|.|.|++|+|||++++.+++.+ |.+++.+.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~ 41 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTR 41 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccccc
Confidence 4678889999999999999999986 45555443
No 320
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.45 E-value=0.036 Score=52.78 Aligned_cols=28 Identities=29% Similarity=0.349 Sum_probs=23.6
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHh
Q 012383 146 IKVPLILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 146 ~~~p~glLL~GPPGtGKT~LAraIA~el 173 (465)
+++...+.|.||.|+|||+|.++|+...
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3445689999999999999999998764
No 321
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=93.37 E-value=0.04 Score=59.73 Aligned_cols=32 Identities=16% Similarity=0.224 Sum_probs=23.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh----CCceEEecc
Q 012383 151 ILGIWGGKGQGKSFQCELVFAKM----GINPIMMSA 182 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~el----g~~~i~vs~ 182 (465)
..+++||||||||+++..++..+ +..++.+..
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~ 232 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAP 232 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEES
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 57899999999999888776653 334444443
No 322
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.34 E-value=0.038 Score=52.49 Aligned_cols=27 Identities=26% Similarity=0.240 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHh
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~el 173 (465)
.+...+.|.||.|+|||+|.++|+.-.
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 344578999999999999999998754
No 323
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.32 E-value=0.031 Score=52.67 Aligned_cols=27 Identities=26% Similarity=0.170 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHh
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~el 173 (465)
++...+.|.||.|+|||+|.++|+.-.
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 334578899999999999999998754
No 324
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.16 E-value=0.041 Score=53.17 Aligned_cols=29 Identities=21% Similarity=0.185 Sum_probs=23.8
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHhC
Q 012383 146 IKVPLILGIWGGKGQGKSFQCELVFAKMG 174 (465)
Q Consensus 146 ~~~p~glLL~GPPGtGKT~LAraIA~elg 174 (465)
++....+.|.||.|+|||+|.++|+.-..
T Consensus 29 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 29 ARAGDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34445788999999999999999987653
No 325
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.12 E-value=0.065 Score=53.45 Aligned_cols=36 Identities=17% Similarity=0.161 Sum_probs=28.2
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEec
Q 012383 146 IKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMS 181 (465)
Q Consensus 146 ~~~p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs 181 (465)
.++|+.+++.||+|+|||+++..+|..+ |..++.+.
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid 140 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAA 140 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4567899999999999999999998764 44444443
No 326
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=93.12 E-value=0.055 Score=50.88 Aligned_cols=30 Identities=27% Similarity=0.372 Sum_probs=26.5
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHhCC
Q 012383 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGI 175 (465)
Q Consensus 146 ~~~p~glLL~GPPGtGKT~LAraIA~elg~ 175 (465)
..|++.|+|+|.||+||+++|+.+.+.+|.
T Consensus 8 ~~~~~II~itGk~~SGKd~va~~l~~~~g~ 37 (202)
T 3ch4_B 8 GAPRLVLLFSGKRKSGKDFVTEALQSRLGA 37 (202)
T ss_dssp CCCSEEEEEEECTTSSHHHHHHHHHHHHCT
T ss_pred cCCCEEEEEECCCCCChHHHHHHHHHHcCC
Confidence 357799999999999999999999887764
No 327
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.10 E-value=0.27 Score=51.04 Aligned_cols=34 Identities=18% Similarity=0.244 Sum_probs=27.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEec
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMS 181 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs 181 (465)
+|..+++.|++|+|||+++..+|..+ |..+..+.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd 133 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEee
Confidence 57889999999999999999999875 44444443
No 328
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=93.08 E-value=0.26 Score=49.13 Aligned_cols=28 Identities=32% Similarity=0.261 Sum_probs=23.8
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHh
Q 012383 146 IKVPLILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 146 ~~~p~glLL~GPPGtGKT~LAraIA~el 173 (465)
......+.|.|+||+|||+++..++..+
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3456788899999999999999998764
No 329
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.06 E-value=0.046 Score=52.12 Aligned_cols=28 Identities=25% Similarity=0.197 Sum_probs=23.8
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHh
Q 012383 146 IKVPLILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 146 ~~~p~glLL~GPPGtGKT~LAraIA~el 173 (465)
+++...+.|.||.|+|||+|.++|+.-.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3445678999999999999999998764
No 330
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.95 E-value=0.055 Score=52.46 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=23.0
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHH
Q 012383 146 IKVPLILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 146 ~~~p~glLL~GPPGtGKT~LAraIA~e 172 (465)
+++...+.|.||.|+|||+|.++|+.-
T Consensus 43 i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 344567899999999999999999875
No 331
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.94 E-value=0.066 Score=51.20 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=22.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHh
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~el 173 (465)
++-|.|.|++|+|||++++.++..+
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5678899999999999999999886
No 332
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=92.91 E-value=0.024 Score=45.15 Aligned_cols=35 Identities=17% Similarity=0.142 Sum_probs=18.7
Q ss_pred HHHHHHHHHhccCC----CCChhHHHHHhcCCCchhhHH
Q 012383 301 EDRIGVCKGIFRND----NVADDDIVKLVDTFPGQSIDF 335 (465)
Q Consensus 301 e~R~~Il~~~l~~~----~v~~~~la~lt~gfsgadld~ 335 (465)
++|.+||+.|+++. +++.+.|++.|+||||+||..
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~ 39 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAA 39 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHH
Confidence 47899999998763 567789999999999999974
No 333
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.86 E-value=0.04 Score=51.51 Aligned_cols=24 Identities=21% Similarity=0.200 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHH
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~e 172 (465)
...+.|.||.|+|||+|.++++..
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 457889999999999999999975
No 334
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.80 E-value=0.05 Score=52.49 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=23.6
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHh
Q 012383 146 IKVPLILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 146 ~~~p~glLL~GPPGtGKT~LAraIA~el 173 (465)
+++...+.|.||.|+|||+|.++|+.-.
T Consensus 43 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 3445679999999999999999998754
No 335
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=92.80 E-value=0.055 Score=55.11 Aligned_cols=27 Identities=26% Similarity=0.129 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHh
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~el 173 (465)
+.-..+.|.||+|||||+|.++||.-.
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 334578899999999999999999864
No 336
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=92.77 E-value=0.062 Score=48.41 Aligned_cols=23 Identities=22% Similarity=0.193 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 012383 150 LILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~e 172 (465)
.-++|.|++|+|||+|.+.++..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 45789999999999999999876
No 337
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.77 E-value=0.051 Score=52.74 Aligned_cols=29 Identities=21% Similarity=0.155 Sum_probs=23.9
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHhC
Q 012383 146 IKVPLILGIWGGKGQGKSFQCELVFAKMG 174 (465)
Q Consensus 146 ~~~p~glLL~GPPGtGKT~LAraIA~elg 174 (465)
++....+.|.||.|+|||+|.++|+.-..
T Consensus 47 i~~Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 47 IREGEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 34456789999999999999999987653
No 338
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.76 E-value=0.052 Score=52.00 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=22.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~e 172 (465)
++...+.|.||.|+|||+|.++|+.-
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 33457899999999999999999874
No 339
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.73 E-value=0.052 Score=52.77 Aligned_cols=29 Identities=21% Similarity=0.217 Sum_probs=24.1
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHhC
Q 012383 146 IKVPLILGIWGGKGQGKSFQCELVFAKMG 174 (465)
Q Consensus 146 ~~~p~glLL~GPPGtGKT~LAraIA~elg 174 (465)
+++...+.|.||.|+|||+|.++|+..+.
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34456789999999999999999987653
No 340
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.71 E-value=0.045 Score=52.67 Aligned_cols=27 Identities=22% Similarity=0.204 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHh
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~el 173 (465)
++...+.|.||.|+|||+|.++|+.-.
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344578999999999999999998764
No 341
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=92.68 E-value=0.05 Score=58.47 Aligned_cols=40 Identities=15% Similarity=0.103 Sum_probs=30.2
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHhC----CceEEeccccc
Q 012383 146 IKVPLILGIWGGKGQGKSFQCELVFAKMG----INPIMMSAGEL 185 (465)
Q Consensus 146 ~~~p~glLL~GPPGtGKT~LAraIA~elg----~~~i~vs~s~L 185 (465)
+.....+.|.|++|+|||+++++|+..++ ..+..+.+..+
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred cccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 34557799999999999999999999975 23434555444
No 342
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.67 E-value=0.062 Score=48.35 Aligned_cols=24 Identities=21% Similarity=0.158 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~el 173 (465)
.-++|.|++|+|||+|.+.++...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 468899999999999999998864
No 343
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.65 E-value=0.088 Score=49.98 Aligned_cols=32 Identities=22% Similarity=0.319 Sum_probs=26.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHhCC----ceEE
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAKMGI----NPIM 179 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~elg~----~~i~ 179 (465)
.++-|.|.|++|+|||++++.+++.++. .++.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~ 55 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVV 55 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeE
Confidence 4677888999999999999999998654 5555
No 344
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.60 E-value=0.048 Score=51.93 Aligned_cols=27 Identities=19% Similarity=0.268 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHh
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~el 173 (465)
+....+.|.||.|+|||+|.++|+.-.
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 334578899999999999999998764
No 345
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=92.60 E-value=0.078 Score=53.26 Aligned_cols=32 Identities=22% Similarity=0.320 Sum_probs=26.4
Q ss_pred CCCC--CeEEEEEcCCCCcHHHHHHHHHHHhCCc
Q 012383 145 NIKV--PLILGIWGGKGQGKSFQCELVFAKMGIN 176 (465)
Q Consensus 145 ~~~~--p~glLL~GPPGtGKT~LAraIA~elg~~ 176 (465)
.+.. ..-+.|.||+|+|||+|+++++..+...
T Consensus 164 ~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 164 EARPFFAKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp TTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred HHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4444 5678999999999999999999986543
No 346
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.59 E-value=0.05 Score=49.37 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~el 173 (465)
+.+.|.||+|+|||+|++.++..+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999885
No 347
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=92.59 E-value=0.33 Score=50.24 Aligned_cols=23 Identities=13% Similarity=-0.083 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 012383 151 ILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~el 173 (465)
-++|.||||||||.|+..|++..
T Consensus 177 R~lIfg~~g~GKT~Ll~~Ia~~i 199 (427)
T 3l0o_A 177 RGMIVAPPKAGKTTILKEIANGI 199 (427)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHH
T ss_pred eEEEecCCCCChhHHHHHHHHHH
Confidence 47899999999999999888863
No 348
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=92.59 E-value=0.22 Score=47.67 Aligned_cols=23 Identities=13% Similarity=0.135 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 012383 150 LILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~e 172 (465)
.-|+|.|+||+|||+|..++...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 56889999999999999999765
No 349
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=92.58 E-value=0.15 Score=60.12 Aligned_cols=29 Identities=24% Similarity=0.228 Sum_probs=24.1
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHHHHh
Q 012383 145 NIKVPLILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 145 ~~~~p~glLL~GPPGtGKT~LAraIA~el 173 (465)
.+++-.-+.|.||+|+|||+|++++..-.
T Consensus 1101 ~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1101 SVEPGQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp EECTTCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred EECCCCEEEEECCCCChHHHHHHHHhcCc
Confidence 34555678999999999999999998764
No 350
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=92.58 E-value=0.064 Score=54.57 Aligned_cols=27 Identities=19% Similarity=0.198 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHh
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~el 173 (465)
+....+.|.||+|||||+|.++||.-.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 334578899999999999999999864
No 351
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=92.57 E-value=0.048 Score=52.23 Aligned_cols=28 Identities=32% Similarity=0.341 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHhC
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKMG 174 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~elg 174 (465)
++...+.|.||.|+|||+|.++|+.-..
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3445789999999999999999987643
No 352
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=92.57 E-value=0.048 Score=51.52 Aligned_cols=27 Identities=19% Similarity=0.393 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHh
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~el 173 (465)
++...+.|.||.|+|||+|.++|+..+
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344678999999999999999999874
No 353
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=92.56 E-value=0.064 Score=54.62 Aligned_cols=27 Identities=22% Similarity=0.198 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHh
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~el 173 (465)
+....+.|.||+|||||+|.++||.-.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 334578899999999999999999864
No 354
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.53 E-value=0.088 Score=47.83 Aligned_cols=25 Identities=20% Similarity=0.137 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHh
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~el 173 (465)
..-|+|.|++|+|||+|..++....
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4578999999999999999998864
No 355
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=92.52 E-value=0.066 Score=57.92 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~el 173 (465)
+-++++||||||||+++..+...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 578999999999999988776553
No 356
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.49 E-value=0.074 Score=45.29 Aligned_cols=22 Identities=27% Similarity=0.211 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 012383 151 ILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~e 172 (465)
-|++.|++|+|||+|++.+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999875
No 357
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=92.46 E-value=0.066 Score=54.94 Aligned_cols=27 Identities=19% Similarity=0.108 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHh
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~el 173 (465)
+.-..+.|.||+|||||+|.++||.-.
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 334578899999999999999999864
No 358
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=92.45 E-value=0.06 Score=52.10 Aligned_cols=27 Identities=26% Similarity=0.244 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHh
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~el 173 (465)
++...+.|.||.|+|||+|.++|+.-.
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 444578899999999999999998764
No 359
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=92.44 E-value=0.056 Score=54.73 Aligned_cols=27 Identities=26% Similarity=0.274 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHh
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~el 173 (465)
+....+.|.||+|||||+|.++||.-.
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 334578899999999999999999764
No 360
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=92.42 E-value=0.068 Score=54.63 Aligned_cols=27 Identities=22% Similarity=0.212 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHh
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~el 173 (465)
+....+.|.||+|||||+|.++||.-.
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 344578899999999999999999764
No 361
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.40 E-value=0.061 Score=51.94 Aligned_cols=28 Identities=25% Similarity=0.439 Sum_probs=23.4
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHh
Q 012383 146 IKVPLILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 146 ~~~p~glLL~GPPGtGKT~LAraIA~el 173 (465)
+++...+.|.||.|+|||+|.++|+.-.
T Consensus 38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3444578999999999999999998764
No 362
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.37 E-value=0.046 Score=51.41 Aligned_cols=26 Identities=15% Similarity=0.222 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHh
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~el 173 (465)
+...+.|.||.|+|||+|.++++...
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34568899999999999999998764
No 363
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=92.35 E-value=0.66 Score=53.35 Aligned_cols=22 Identities=18% Similarity=-0.020 Sum_probs=19.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH
Q 012383 149 PLILGIWGGKGQGKSFQCELVF 170 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA 170 (465)
...++|.||.|+|||++.|.|+
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHH
Confidence 4789999999999999999984
No 364
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=92.30 E-value=0.085 Score=45.13 Aligned_cols=24 Identities=17% Similarity=0.129 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHH
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~e 172 (465)
..-|++.|++|+|||+|++.+...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 356899999999999999999875
No 365
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=92.25 E-value=0.063 Score=54.53 Aligned_cols=27 Identities=22% Similarity=0.354 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHh
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~el 173 (465)
+.-..+.|.||+|||||+|.++||.-.
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 334578899999999999999999764
No 366
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.24 E-value=0.054 Score=52.93 Aligned_cols=27 Identities=30% Similarity=0.320 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHh
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~el 173 (465)
++...+.|.||.|+|||+|.++|+.-.
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 334578999999999999999998764
No 367
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.21 E-value=0.1 Score=46.20 Aligned_cols=27 Identities=19% Similarity=0.114 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHh
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~el 173 (465)
....-|+|.|++|+|||+|..++....
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345678999999999999999998763
No 368
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.21 E-value=0.056 Score=52.44 Aligned_cols=27 Identities=26% Similarity=0.314 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHh
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~el 173 (465)
++...+.|.||.|+|||+|.++|+.-.
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 344578899999999999999998764
No 369
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.20 E-value=0.057 Score=51.94 Aligned_cols=27 Identities=26% Similarity=0.245 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHh
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~el 173 (465)
++...+.|.||.|+|||+|.++++..+
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 334578999999999999999998764
No 370
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=92.16 E-value=0.083 Score=44.78 Aligned_cols=23 Identities=26% Similarity=0.247 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 012383 150 LILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~e 172 (465)
.-|++.|++|+|||+|+..+...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999876
No 371
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=92.12 E-value=0.067 Score=54.63 Aligned_cols=26 Identities=15% Similarity=0.148 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHh
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~el 173 (465)
....+.|.||+|||||+|.++||.-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 34578899999999999999999864
No 372
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=92.12 E-value=0.088 Score=44.79 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 012383 150 LILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~e 172 (465)
.-|++.|+||+|||+|..++...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999998865
No 373
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=92.09 E-value=0.059 Score=51.84 Aligned_cols=27 Identities=30% Similarity=0.363 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHh
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~el 173 (465)
++...+.|.||.|+|||+|.++|+.-.
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344578899999999999999998764
No 374
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=92.07 E-value=0.093 Score=49.06 Aligned_cols=27 Identities=22% Similarity=0.132 Sum_probs=23.6
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHH
Q 012383 146 IKVPLILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 146 ~~~p~glLL~GPPGtGKT~LAraIA~e 172 (465)
.+.+..+.|.||.|+|||++++.++..
T Consensus 17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 345677899999999999999999987
No 375
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=92.06 E-value=0.34 Score=45.63 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHH
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~e 172 (465)
.+.-|+|.|+||+|||+|...+...
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHhCC
Confidence 3467999999999999999999865
No 376
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=92.05 E-value=0.06 Score=52.66 Aligned_cols=28 Identities=18% Similarity=0.079 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHhC
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKMG 174 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~elg 174 (465)
++...+.|.||.|+|||+|.++|+..+.
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3345788999999999999999987653
No 377
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=92.04 E-value=0.17 Score=47.43 Aligned_cols=35 Identities=14% Similarity=0.129 Sum_probs=27.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHh--CCceEEec
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKM--GINPIMMS 181 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~el--g~~~i~vs 181 (465)
..+..+++.|.+|+|||+++..+|..+ |..+..++
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd 48 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN 48 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 345788899999999999999999776 55555544
No 378
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=92.04 E-value=0.056 Score=54.77 Aligned_cols=27 Identities=22% Similarity=0.256 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHh
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~el 173 (465)
+....+.|.||+|||||+|.++||.-.
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 334578899999999999999999764
No 379
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=92.01 E-value=0.098 Score=44.54 Aligned_cols=24 Identities=21% Similarity=0.073 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHH
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~e 172 (465)
+.-|++.|++|+|||+|.+++...
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 356899999999999999999875
No 380
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=91.99 E-value=0.077 Score=59.43 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 012383 151 ILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~el 173 (465)
..+++||||||||+++..++..+
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999888777653
No 381
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.96 E-value=0.094 Score=44.84 Aligned_cols=23 Identities=22% Similarity=0.180 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 012383 150 LILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~e 172 (465)
.-|++.|++|+|||+|..++...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999865
No 382
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=91.94 E-value=0.075 Score=56.25 Aligned_cols=29 Identities=17% Similarity=0.180 Sum_probs=25.5
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHHHHh
Q 012383 145 NIKVPLILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 145 ~~~~p~glLL~GPPGtGKT~LAraIA~el 173 (465)
++.+-..++|.||||+|||+|++.++...
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 66667789999999999999999998764
No 383
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=91.92 E-value=0.13 Score=44.21 Aligned_cols=25 Identities=20% Similarity=0.105 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHH
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~e 172 (465)
.+.-|++.|++|+|||+|...+...
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 4567999999999999999999764
No 384
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=91.81 E-value=0.066 Score=55.72 Aligned_cols=35 Identities=20% Similarity=0.380 Sum_probs=28.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEecc
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 182 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs~ 182 (465)
.|..|++.|+||+|||+++..+|..+ |..+..+++
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~ 135 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAA 135 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 46789999999999999999999875 456666554
No 385
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=91.81 E-value=0.11 Score=48.68 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHh
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~el 173 (465)
.+-|.|.|++|+|||++++.+++.+
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3568889999999999999999986
No 386
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=91.76 E-value=0.077 Score=47.15 Aligned_cols=21 Identities=29% Similarity=0.363 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 012383 151 ILGIWGGKGQGKSFQCELVFA 171 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~ 171 (465)
-|+|.|++|+|||+|.+.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999976
No 387
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=91.76 E-value=0.094 Score=50.90 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 012383 151 ILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~el 173 (465)
.+.|.||+|+|||+|.++++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999875
No 388
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=91.75 E-value=0.1 Score=44.74 Aligned_cols=24 Identities=25% Similarity=0.209 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~el 173 (465)
.-|++.|++|+|||+|.+++....
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 568999999999999999998763
No 389
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=91.74 E-value=0.11 Score=57.74 Aligned_cols=23 Identities=26% Similarity=0.252 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 012383 150 LILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~e 172 (465)
..+++.||+|+|||+++..+...
T Consensus 110 ~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999987777554
No 390
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=91.71 E-value=0.1 Score=45.26 Aligned_cols=23 Identities=22% Similarity=0.231 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 012383 150 LILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~e 172 (465)
.-|++.|++|+|||+|...+...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 56899999999999999999865
No 391
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=91.69 E-value=0.11 Score=45.10 Aligned_cols=24 Identities=25% Similarity=0.213 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHH
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~e 172 (465)
+.-|++.|++|+|||+|...+...
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 467899999999999999998875
No 392
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=91.69 E-value=0.1 Score=44.78 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 012383 150 LILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~e 172 (465)
.-|++.|++|+|||+|..++...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46899999999999999999865
No 393
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=91.67 E-value=0.11 Score=44.75 Aligned_cols=24 Identities=13% Similarity=0.043 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHH
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~e 172 (465)
+.-|++.|++|+|||+|.+++...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 356899999999999999999865
No 394
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=91.66 E-value=0.09 Score=54.03 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~e 172 (465)
+.-..+.|.||+|||||+|.++|+.-
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCC
Confidence 44457899999999999999999974
No 395
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=91.65 E-value=0.099 Score=45.55 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 012383 150 LILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~e 172 (465)
.-++|.|+||+|||+|.++++..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 45889999999999999999863
No 396
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=91.64 E-value=0.13 Score=46.94 Aligned_cols=27 Identities=26% Similarity=0.496 Sum_probs=23.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHhCC
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKMGI 175 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~elg~ 175 (465)
...++|.|++|+|||+|+..++..+..
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~ 56 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGN 56 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 457889999999999999999988643
No 397
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=91.54 E-value=0.11 Score=44.36 Aligned_cols=23 Identities=22% Similarity=0.131 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 012383 150 LILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~e 172 (465)
.-|+|.|++|+|||+|..++...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 56899999999999999999864
No 398
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=91.50 E-value=0.12 Score=44.69 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHH
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~e 172 (465)
+.-|+|.|+||+|||+|.+.+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 356899999999999999998754
No 399
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=91.41 E-value=0.12 Score=44.11 Aligned_cols=22 Identities=14% Similarity=-0.058 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 012383 151 ILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~e 172 (465)
-|++.|++|+|||+|...+...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999865
No 400
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=91.40 E-value=0.12 Score=45.18 Aligned_cols=25 Identities=16% Similarity=0.026 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHH
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~e 172 (465)
.+.-|+|.|++|+|||+|..++...
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcC
Confidence 3467899999999999999999874
No 401
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=91.35 E-value=0.089 Score=51.77 Aligned_cols=28 Identities=21% Similarity=0.426 Sum_probs=23.5
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHh
Q 012383 146 IKVPLILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 146 ~~~p~glLL~GPPGtGKT~LAraIA~el 173 (465)
+++...+.|.||.|+|||+|.++|+...
T Consensus 61 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 61 IERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3444678999999999999999998764
No 402
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=91.35 E-value=0.12 Score=44.13 Aligned_cols=23 Identities=26% Similarity=0.219 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 012383 150 LILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~e 172 (465)
.-|++.|++|+|||+|.+++...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999999875
No 403
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=91.34 E-value=0.11 Score=50.00 Aligned_cols=28 Identities=14% Similarity=0.240 Sum_probs=24.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhCCce
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKMGINP 177 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~elg~~~ 177 (465)
+.|.|+|++|||||++++.+...+|++.
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~g~~~ 29 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNYSAVK 29 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 3688999999999999999998888664
No 404
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.29 E-value=0.15 Score=45.60 Aligned_cols=25 Identities=32% Similarity=0.422 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHH
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~e 172 (465)
...-|+|.|++|+|||+|.+.+...
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4567999999999999999999876
No 405
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=91.26 E-value=0.12 Score=44.37 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 012383 150 LILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~e 172 (465)
.-|++.|++|+|||+|..++...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45889999999999999999864
No 406
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=91.24 E-value=0.15 Score=44.69 Aligned_cols=25 Identities=16% Similarity=0.024 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHH
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~e 172 (465)
.+.-|+|.|++|+|||+|..++...
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3467899999999999999999876
No 407
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=91.24 E-value=0.12 Score=44.72 Aligned_cols=23 Identities=17% Similarity=0.156 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 012383 150 LILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~e 172 (465)
.-|+|.|++|+|||+|...+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999999865
No 408
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=91.21 E-value=0.33 Score=46.97 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 012383 150 LILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~e 172 (465)
.-|.|.|+||+|||+|..++...
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 45889999999999999999864
No 409
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=91.21 E-value=0.12 Score=44.48 Aligned_cols=21 Identities=24% Similarity=0.151 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 012383 151 ILGIWGGKGQGKSFQCELVFA 171 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~ 171 (465)
-|+|.|+||+|||+|...+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999999863
No 410
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=91.21 E-value=0.14 Score=45.10 Aligned_cols=25 Identities=28% Similarity=0.290 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHh
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~el 173 (465)
|...+|+||.|+|||++..||.-.+
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3467899999999999999998765
No 411
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=91.21 E-value=0.15 Score=44.26 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHH
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~e 172 (465)
.+.-|+|.|++|+|||+|..++...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3567899999999999999999764
No 412
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=91.15 E-value=0.11 Score=44.58 Aligned_cols=21 Identities=24% Similarity=0.259 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 012383 151 ILGIWGGKGQGKSFQCELVFA 171 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~ 171 (465)
-|+|.|+||+|||+|.+.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 478999999999999998864
No 413
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=91.13 E-value=0.13 Score=45.58 Aligned_cols=30 Identities=13% Similarity=0.019 Sum_probs=23.4
Q ss_pred hCCCCCCCeEEEEEcCCCCcHHHHHHHHHH
Q 012383 142 SLPNIKVPLILGIWGGKGQGKSFQCELVFA 171 (465)
Q Consensus 142 ~~~~~~~p~glLL~GPPGtGKT~LAraIA~ 171 (465)
...+.+.+.-|++.|++|+|||+|..++..
T Consensus 15 ~~f~~~~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 15 GLLPADRKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp HTSCTTSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred hhccCCCceEEEEECCCCCCHHHHHHHHHc
Confidence 344434567899999999999999998853
No 414
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=91.11 E-value=0.11 Score=58.22 Aligned_cols=33 Identities=15% Similarity=0.217 Sum_probs=23.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh----CCceEEeccc
Q 012383 151 ILGIWGGKGQGKSFQCELVFAKM----GINPIMMSAG 183 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~el----g~~~i~vs~s 183 (465)
.+|++||||||||+++..+...+ +..++.+..+
T Consensus 377 ~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~t 413 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPS 413 (802)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCc
Confidence 57899999999999877665542 4555555544
No 415
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=91.08 E-value=0.13 Score=44.43 Aligned_cols=24 Identities=29% Similarity=0.188 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHH
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~e 172 (465)
..-|++.|++|+|||+|.+.+...
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 357899999999999999999876
No 416
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=91.06 E-value=0.098 Score=50.72 Aligned_cols=25 Identities=20% Similarity=0.181 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHh
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~el 173 (465)
...+.|.||.|+|||+|.++|+...
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 3478899999999999999998765
No 417
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=91.02 E-value=0.38 Score=51.05 Aligned_cols=28 Identities=21% Similarity=0.258 Sum_probs=23.5
Q ss_pred EEEEEcCCCCcHHHH-HHHHHHHhCCceE
Q 012383 151 ILGIWGGKGQGKSFQ-CELVFAKMGINPI 178 (465)
Q Consensus 151 glLL~GPPGtGKT~L-AraIA~elg~~~i 178 (465)
-++|.|++|||||.| ...|++..+..++
T Consensus 164 R~~Ifg~~g~GKT~Lal~~I~~~~~~dv~ 192 (502)
T 2qe7_A 164 RELIIGDRQTGKTTIAIDTIINQKGQDVI 192 (502)
T ss_dssp BCEEEECSSSCHHHHHHHHHHGGGSCSEE
T ss_pred EEEEECCCCCCchHHHHHHHHHhhcCCcE
Confidence 368999999999999 5799999876644
No 418
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=91.02 E-value=0.36 Score=51.35 Aligned_cols=28 Identities=18% Similarity=0.179 Sum_probs=23.5
Q ss_pred EEEEEcCCCCcHHHH-HHHHHHHhCCceE
Q 012383 151 ILGIWGGKGQGKSFQ-CELVFAKMGINPI 178 (465)
Q Consensus 151 glLL~GPPGtGKT~L-AraIA~elg~~~i 178 (465)
-++|.|++|||||.| ...|++..+..++
T Consensus 177 R~~I~g~~g~GKT~Lal~~I~~~~~~dv~ 205 (515)
T 2r9v_A 177 RELIIGDRQTGKTAIAIDTIINQKGQGVY 205 (515)
T ss_dssp BEEEEEETTSSHHHHHHHHHHTTTTTTEE
T ss_pred EEEEEcCCCCCccHHHHHHHHHhhcCCcE
Confidence 378999999999999 5799998876644
No 419
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=91.01 E-value=0.35 Score=46.26 Aligned_cols=23 Identities=13% Similarity=0.148 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 012383 150 LILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~e 172 (465)
.-|+|.|+||+|||+|..++...
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 45889999999999999999764
No 420
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=91.00 E-value=0.07 Score=48.10 Aligned_cols=26 Identities=15% Similarity=0.162 Sum_probs=21.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~e 172 (465)
....-+.|.|++|+|||+|.++++..
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 44457899999999999999988654
No 421
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=90.94 E-value=0.14 Score=44.65 Aligned_cols=24 Identities=21% Similarity=0.073 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHH
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~e 172 (465)
..-|+|.|++|+|||+|.+.+...
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 357899999999999999999875
No 422
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=90.92 E-value=0.21 Score=46.43 Aligned_cols=32 Identities=22% Similarity=0.379 Sum_probs=25.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh--CCceEEec
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKM--GINPIMMS 181 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~el--g~~~i~vs 181 (465)
+=|.|-|+.|+|||++++.+++.+ |.+++.+.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~~ 36 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTR 36 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEee
Confidence 346788999999999999999987 45555543
No 423
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=90.90 E-value=0.14 Score=45.11 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 012383 150 LILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~e 172 (465)
.-|+|.|++|+|||+|.++++..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 56889999999999999999874
No 424
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=90.84 E-value=0.14 Score=44.50 Aligned_cols=24 Identities=17% Similarity=0.189 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHH
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~e 172 (465)
+.-|+|.|++|+|||+|...+...
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 456899999999999999998754
No 425
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=90.83 E-value=0.14 Score=44.77 Aligned_cols=24 Identities=25% Similarity=0.252 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHH
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~e 172 (465)
+.-|+|.|++|+|||+|..++...
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHhC
Confidence 356899999999999999999875
No 426
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=90.81 E-value=0.66 Score=48.00 Aligned_cols=22 Identities=23% Similarity=0.289 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 012383 151 ILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~e 172 (465)
-|+|.|.||+|||+|..++...
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6889999999999999998654
No 427
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=90.80 E-value=0.13 Score=45.34 Aligned_cols=24 Identities=13% Similarity=0.074 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHH
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~e 172 (465)
..-|++.|++|+|||+|.+.+...
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999999875
No 428
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=90.79 E-value=0.18 Score=46.07 Aligned_cols=26 Identities=19% Similarity=0.388 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHhC
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKMG 174 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~elg 174 (465)
+.-++|.|++|+|||+|+..++....
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 45677779999999999999998853
No 429
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=90.78 E-value=0.14 Score=44.46 Aligned_cols=23 Identities=26% Similarity=0.202 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 012383 150 LILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~e 172 (465)
.-|+|.|++|+|||+|..++...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 56899999999999999999875
No 430
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=90.77 E-value=0.14 Score=44.37 Aligned_cols=23 Identities=30% Similarity=0.273 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 012383 150 LILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~e 172 (465)
.-|+|.|++|+|||+|.+++...
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 57899999999999999999876
No 431
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=90.77 E-value=0.14 Score=45.15 Aligned_cols=23 Identities=26% Similarity=0.247 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 012383 150 LILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~e 172 (465)
.-|++.|++|+|||+|+..++..
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 56889999999999999999876
No 432
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=90.76 E-value=0.13 Score=44.57 Aligned_cols=24 Identities=29% Similarity=0.151 Sum_probs=20.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHH
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~e 172 (465)
..-|+|.|++|+|||+|..++...
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 356899999999999999998654
No 433
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=90.71 E-value=0.084 Score=53.34 Aligned_cols=26 Identities=15% Similarity=0.309 Sum_probs=23.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHhC
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKMG 174 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~elg 174 (465)
...++|.||+|+|||+++++++....
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 45789999999999999999998754
No 434
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=90.70 E-value=0.14 Score=44.83 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHH
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~e 172 (465)
..-|+|.|++|+|||+|.+.+...
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 457899999999999999999865
No 435
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=90.69 E-value=0.15 Score=45.31 Aligned_cols=24 Identities=17% Similarity=0.138 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHH
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~e 172 (465)
..-|+|.|++|+|||+|...+...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999999875
No 436
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=90.68 E-value=0.39 Score=45.89 Aligned_cols=22 Identities=14% Similarity=0.046 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 012383 151 ILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~e 172 (465)
-|+|.|.||+|||+|..++...
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4788999999999999999765
No 437
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=90.59 E-value=0.14 Score=44.96 Aligned_cols=24 Identities=17% Similarity=0.354 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~el 173 (465)
.-|+|.|++|+|||+|.+.+....
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 568999999999999999887653
No 438
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=90.56 E-value=0.099 Score=51.95 Aligned_cols=28 Identities=29% Similarity=0.332 Sum_probs=23.9
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHh
Q 012383 146 IKVPLILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 146 ~~~p~glLL~GPPGtGKT~LAraIA~el 173 (465)
+++...+.|.||.|+|||+|+++|+...
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 4455689999999999999999998764
No 439
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=90.53 E-value=0.14 Score=53.71 Aligned_cols=27 Identities=19% Similarity=0.078 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHh
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~el 173 (465)
+....++|.||.|+|||+|++.|+...
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 344568899999999999999999864
No 440
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=90.47 E-value=0.2 Score=50.47 Aligned_cols=29 Identities=24% Similarity=0.432 Sum_probs=24.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHHhCCc
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAKMGIN 176 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~elg~~ 176 (465)
.-.-+.|.||+|+|||+|.+.|++.....
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~ 98 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGASAD 98 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 34568999999999999999999997654
No 441
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=90.46 E-value=0.14 Score=52.16 Aligned_cols=27 Identities=30% Similarity=0.283 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHHh
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~el 173 (465)
+.-..+.|.||+|+|||+|.++|+.-.
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 334578899999999999999998764
No 442
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=90.39 E-value=0.16 Score=44.20 Aligned_cols=23 Identities=13% Similarity=0.027 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 012383 150 LILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~e 172 (465)
.-|+|.|++|+|||+|.+.+...
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999998864
No 443
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=90.39 E-value=0.16 Score=44.38 Aligned_cols=24 Identities=33% Similarity=0.325 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHH
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~e 172 (465)
..-|+|.|++|+|||+|..++...
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 357899999999999999999865
No 444
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.31 E-value=0.17 Score=43.97 Aligned_cols=25 Identities=20% Similarity=0.171 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHH
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~e 172 (465)
.+.-|+|.|++|+|||+|..++...
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3457899999999999999999875
No 445
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=90.29 E-value=0.18 Score=44.44 Aligned_cols=24 Identities=21% Similarity=0.164 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHH
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~e 172 (465)
..-|+|.|+||+|||+|.++++..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346889999999999999999875
No 446
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=90.24 E-value=0.17 Score=44.71 Aligned_cols=24 Identities=25% Similarity=0.158 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHH
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~e 172 (465)
+.-|+|.|++|+|||+|.+++...
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 457899999999999999999875
No 447
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=90.21 E-value=0.73 Score=44.30 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHH
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~e 172 (465)
..-|+|.|.||+|||+|..++...
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhCC
Confidence 356889999999999999999765
No 448
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=90.17 E-value=0.17 Score=44.75 Aligned_cols=24 Identities=17% Similarity=-0.009 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHH
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~e 172 (465)
..-|+|.|++|+|||+|..++...
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 357899999999999999999876
No 449
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=90.17 E-value=0.21 Score=43.37 Aligned_cols=24 Identities=13% Similarity=-0.071 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHH
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~e 172 (465)
..-|++.|++|+|||+|...+...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999998864
No 450
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=90.16 E-value=0.25 Score=51.35 Aligned_cols=31 Identities=19% Similarity=0.323 Sum_probs=25.6
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHhCCc
Q 012383 146 IKVPLILGIWGGKGQGKSFQCELVFAKMGIN 176 (465)
Q Consensus 146 ~~~p~glLL~GPPGtGKT~LAraIA~elg~~ 176 (465)
+..-.-+.|.||+|||||+|.+.|+......
T Consensus 154 i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~ 184 (438)
T 2dpy_A 154 VGRGQRMGLFAGSGVGKSVLLGMMARYTRAD 184 (438)
T ss_dssp CBTTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcccCCC
Confidence 3344578899999999999999999997554
No 451
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=90.12 E-value=0.15 Score=44.65 Aligned_cols=22 Identities=23% Similarity=0.081 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 012383 151 ILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~e 172 (465)
-|++.|++|+|||+|...+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999999865
No 452
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=90.09 E-value=0.17 Score=44.73 Aligned_cols=24 Identities=17% Similarity=0.131 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHH
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~e 172 (465)
+.-|+|.|++|+|||+|..++...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457889999999999999999754
No 453
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.04 E-value=0.18 Score=44.80 Aligned_cols=25 Identities=20% Similarity=-0.000 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHh
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~el 173 (465)
..-|+|.|++|+|||+|...+....
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCC
Confidence 3568999999999999999998764
No 454
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=90.03 E-value=0.29 Score=45.08 Aligned_cols=31 Identities=29% Similarity=0.363 Sum_probs=25.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCceEEecc
Q 012383 152 LGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 182 (465)
Q Consensus 152 lLL~GPPGtGKT~LAraIA~el---g~~~i~vs~ 182 (465)
|.|-|+-|+|||++++.+++.+ |.+++.+.-
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tre 36 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 5678999999999999999886 677776543
No 455
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=89.99 E-value=0.14 Score=44.99 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 012383 150 LILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~e 172 (465)
.-|+|.|++|+|||+|..++...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999999776
No 456
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=89.92 E-value=0.19 Score=44.28 Aligned_cols=23 Identities=30% Similarity=0.186 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 012383 150 LILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~e 172 (465)
.-|+|.|++|+|||+|..++...
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 57899999999999999999876
No 457
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=89.87 E-value=0.15 Score=44.36 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHH
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~e 172 (465)
..-|+|.|++|+|||+|...+...
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356899999999999999999875
No 458
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=89.86 E-value=0.19 Score=44.80 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 012383 150 LILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~e 172 (465)
.-|+|.|++|+|||+|...+...
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 56899999999999999998865
No 459
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=89.78 E-value=0.25 Score=50.21 Aligned_cols=78 Identities=15% Similarity=0.272 Sum_probs=47.7
Q ss_pred ccccccccccccCCCCCchhHHHHHHHHHHHhhhhCCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhCCceEEeccccccc
Q 012383 108 QGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES 187 (465)
Q Consensus 108 ~~~r~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~LAraIA~elg~~~i~vs~s~L~s 187 (465)
...+.|+||.+.++ .--.++.+..+..++...+. |. .-.|+-||..|+|||+.. .|-. -..
T Consensus 68 ~~~~~F~fD~Vf~~-~sQ~~Vy~~~~~~lv~~~l~--G~--N~tIfAYGqTGSGKTyTM------~G~~--------~~~ 128 (358)
T 2nr8_A 68 QTDWSFKLDGVLHD-ASQDLVYETVAKDVVSQALD--GY--NGTIMCYGQTGAGKTYTM------MGAT--------ENY 128 (358)
T ss_dssp CCEEEEECSEEEES-CCHHHHHHHHTHHHHHHHHT--TC--CEEEEEEESTTSSHHHHH------TBCS--------SCG
T ss_pred CcceEEECCeecCC-cCHHHHHHHHHHHHHHHHhC--CC--ceEEEEECCCCCCCceEe------cccc--------ccc
Confidence 34566888887743 22234555555556666554 33 357889999999999764 2211 000
Q ss_pred CCCCChHHHHHHHHHHH
Q 012383 188 GNAGEPAKLIRQRYREA 204 (465)
Q Consensus 188 ~~~Ge~~k~Ir~~F~~A 204 (465)
...|--.+.++.+|...
T Consensus 129 ~~~Giipra~~~lF~~i 145 (358)
T 2nr8_A 129 KHRGILPRALQQVFRMI 145 (358)
T ss_dssp GGBCHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHH
Confidence 12355578888899876
No 460
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.78 E-value=0.15 Score=44.45 Aligned_cols=25 Identities=24% Similarity=0.138 Sum_probs=21.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFA 171 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~ 171 (465)
+.+.-|++.|++|+|||+|...+..
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 4567899999999999999998863
No 461
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=89.76 E-value=0.19 Score=43.89 Aligned_cols=23 Identities=22% Similarity=0.124 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 012383 150 LILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~e 172 (465)
.-|+|.|++|+|||+|...+...
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 56889999999999999999854
No 462
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=89.75 E-value=0.18 Score=44.86 Aligned_cols=25 Identities=24% Similarity=0.213 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHH
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~e 172 (465)
...-|+|.|++|+|||+|...+...
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred CceEEEEECcCCCCHHHHHHHHhcC
Confidence 3457899999999999999999865
No 463
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=89.75 E-value=0.19 Score=44.69 Aligned_cols=24 Identities=21% Similarity=0.073 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHH
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~e 172 (465)
..-|+|.|++|+|||+|...+...
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 357899999999999999999865
No 464
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=89.74 E-value=0.19 Score=46.33 Aligned_cols=27 Identities=26% Similarity=0.197 Sum_probs=23.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHhCC
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKMGI 175 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~elg~ 175 (465)
|...+|+||.|+|||++..||.-.++-
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 456789999999999999999887654
No 465
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=89.73 E-value=0.22 Score=43.74 Aligned_cols=26 Identities=19% Similarity=0.106 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~e 172 (465)
+.+.-|++.|++|+|||+|...+...
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 44678999999999999999998764
No 466
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=89.70 E-value=0.2 Score=44.72 Aligned_cols=23 Identities=17% Similarity=0.063 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 012383 150 LILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~e 172 (465)
.-|++.|+||+|||+|.+.+...
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46889999999999999999874
No 467
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=89.65 E-value=0.2 Score=44.33 Aligned_cols=24 Identities=17% Similarity=0.095 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHH
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~e 172 (465)
+.-|+|.|++|+|||+|...+...
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 357899999999999999999865
No 468
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=89.61 E-value=0.22 Score=49.75 Aligned_cols=29 Identities=24% Similarity=0.217 Sum_probs=24.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHhCCceE
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKMGINPI 178 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~elg~~~i 178 (465)
.+|+||.|++|+|||++|.++... |..++
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv 172 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR-GHRLV 172 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT-TCEEE
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc-CCcee
Confidence 379999999999999999999775 55544
No 469
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=89.59 E-value=0.24 Score=44.36 Aligned_cols=26 Identities=15% Similarity=0.058 Sum_probs=21.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHH
Q 012383 147 KVPLILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 147 ~~p~glLL~GPPGtGKT~LAraIA~e 172 (465)
+...-|+|.|++|+|||+|...+...
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhC
Confidence 34567999999999999999999765
No 470
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=89.58 E-value=0.2 Score=44.40 Aligned_cols=24 Identities=17% Similarity=0.177 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHH
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~e 172 (465)
..-|+|.|++|+|||+|...+...
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 457899999999999999999865
No 471
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=89.57 E-value=0.21 Score=44.56 Aligned_cols=25 Identities=32% Similarity=0.304 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHH
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~e 172 (465)
...-|+|.|++|+|||+|...+...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3467899999999999999999876
No 472
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=89.55 E-value=0.21 Score=44.41 Aligned_cols=24 Identities=29% Similarity=0.164 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHH
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~e 172 (465)
..-|+|.|++|+|||+|...+...
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 356899999999999999999865
No 473
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=89.55 E-value=0.2 Score=44.57 Aligned_cols=23 Identities=30% Similarity=0.348 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 012383 150 LILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~e 172 (465)
.-|+|.|++|+|||+|...+...
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999887765
No 474
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=89.54 E-value=0.21 Score=44.43 Aligned_cols=24 Identities=17% Similarity=0.086 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHH
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~e 172 (465)
+.-|+|.|++|+|||+|.+.+...
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999999876
No 475
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=89.44 E-value=0.51 Score=50.10 Aligned_cols=28 Identities=14% Similarity=0.098 Sum_probs=22.6
Q ss_pred EEEEEcCCCCcHHHHH-HHHHHHhCCceE
Q 012383 151 ILGIWGGKGQGKSFQC-ELVFAKMGINPI 178 (465)
Q Consensus 151 glLL~GPPGtGKT~LA-raIA~elg~~~i 178 (465)
-++|.|++|||||.++ ..|++..+..++
T Consensus 164 R~~Ifg~~g~GKT~l~l~~I~n~~~~dv~ 192 (513)
T 3oaa_A 164 RELIIGDRQTGKTALAIDAIINQRDSGIK 192 (513)
T ss_dssp BCEEEESSSSSHHHHHHHHHHTTSSSSCE
T ss_pred EEEeecCCCCCcchHHHHHHHhhccCCce
Confidence 3688999999999995 789888666543
No 476
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=89.40 E-value=0.36 Score=51.26 Aligned_cols=27 Identities=26% Similarity=0.345 Sum_probs=22.6
Q ss_pred EEEEcCCCCcHHHH-HHHHHHHhCCceE
Q 012383 152 LGIWGGKGQGKSFQ-CELVFAKMGINPI 178 (465)
Q Consensus 152 lLL~GPPGtGKT~L-AraIA~elg~~~i 178 (465)
++|.|++|+|||.| ...|++..+..++
T Consensus 166 ~~Ifg~~g~GKT~Lal~~I~~~~~~dv~ 193 (507)
T 1fx0_A 166 ELIIGDRQTGKTAVATDTILNQQGQNVI 193 (507)
T ss_dssp CBEEESSSSSHHHHHHHHHHTCCTTTCE
T ss_pred EEEecCCCCCccHHHHHHHHHhhcCCcE
Confidence 68999999999999 5799998766543
No 477
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=89.36 E-value=0.23 Score=49.56 Aligned_cols=30 Identities=17% Similarity=-0.061 Sum_probs=24.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHhCCceEE
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKMGINPIM 179 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~elg~~~i~ 179 (465)
.+|+||.|++|+|||++|..+.. .|..++.
T Consensus 147 g~gvli~G~sG~GKStlal~l~~-~G~~lv~ 176 (312)
T 1knx_A 147 GVGVLLTGRSGIGKSECALDLIN-KNHLFVG 176 (312)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHT-TTCEEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH-cCCEEEe
Confidence 37999999999999999988754 5665544
No 478
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=89.35 E-value=0.42 Score=50.32 Aligned_cols=24 Identities=13% Similarity=0.151 Sum_probs=21.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCC
Q 012383 152 LGIWGGKGQGKSFQCELVFAKMGI 175 (465)
Q Consensus 152 lLL~GPPGtGKT~LAraIA~elg~ 175 (465)
++|.|++|+|||.|+..||+...+
T Consensus 155 ~~Ifgg~G~GKt~Ll~~Ia~~~~~ 178 (469)
T 2c61_A 155 LPIFSASGLPHNEIALQIARQASV 178 (469)
T ss_dssp CCEEECTTSCHHHHHHHHHHHCBC
T ss_pred EEEECCCCCCHHHHHHHHHHHHhh
Confidence 567899999999999999999865
No 479
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=89.26 E-value=0.21 Score=44.65 Aligned_cols=24 Identities=17% Similarity=-0.009 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHH
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~e 172 (465)
..-|+|.|++|+|||+|...+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 356899999999999999998765
No 480
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=89.23 E-value=0.21 Score=44.79 Aligned_cols=24 Identities=17% Similarity=0.023 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHH
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~e 172 (465)
..-|+|.|++|+|||+|.+++...
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEEECCCCcCHHHHHHHHHhC
Confidence 457899999999999999999875
No 481
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.21 E-value=0.28 Score=43.32 Aligned_cols=25 Identities=20% Similarity=0.166 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHH
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~e 172 (465)
...-|+|.|++|+|||+|..++...
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcC
Confidence 3467899999999999999999874
No 482
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=89.20 E-value=0.21 Score=44.78 Aligned_cols=24 Identities=25% Similarity=0.155 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHH
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~e 172 (465)
..-|+|.|++|+|||+|...+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 356899999999999999999865
No 483
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.07 E-value=0.28 Score=44.00 Aligned_cols=25 Identities=20% Similarity=0.177 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHH
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~e 172 (465)
...-|+|.|++|+|||+|..++...
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3467899999999999999999865
No 484
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=89.07 E-value=0.5 Score=46.57 Aligned_cols=24 Identities=17% Similarity=0.151 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 012383 150 LILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~el 173 (465)
..++|.|+.|+|||++.+.+....
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 467899999999999999999763
No 485
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=88.97 E-value=0.28 Score=43.27 Aligned_cols=25 Identities=16% Similarity=-0.072 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHH
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~e 172 (465)
...-|+|.|++|+|||+|.+.+...
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 4567999999999999999999853
No 486
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=88.92 E-value=1.3 Score=45.57 Aligned_cols=22 Identities=23% Similarity=0.289 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 012383 151 ILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 151 glLL~GPPGtGKT~LAraIA~e 172 (465)
-|.|.|.||+|||+|...++..
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998764
No 487
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=88.91 E-value=0.23 Score=45.29 Aligned_cols=24 Identities=13% Similarity=0.074 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHH
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~e 172 (465)
..-|+|.|++|+|||+|++.+...
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 457899999999999999999875
No 488
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=88.86 E-value=0.51 Score=43.48 Aligned_cols=33 Identities=15% Similarity=-0.035 Sum_probs=26.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEec
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMS 181 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs 181 (465)
-+..+++||+|+|||+.+-.++... |..++.+.
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k 43 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFK 43 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 3678899999999999888877774 66666653
No 489
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=88.81 E-value=0.26 Score=52.10 Aligned_cols=28 Identities=25% Similarity=0.328 Sum_probs=24.0
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHHhC
Q 012383 146 IKVPLILGIWGGKGQGKSFQCELVFAKMG 174 (465)
Q Consensus 146 ~~~p~glLL~GPPGtGKT~LAraIA~elg 174 (465)
++. ..+.|.||.|+|||+|.++|+.-+.
T Consensus 27 i~~-e~~~liG~nGsGKSTLl~~l~Gl~~ 54 (483)
T 3euj_A 27 FDE-LVTTLSGGNGAGKSTTMAGFVTALI 54 (483)
T ss_dssp CCS-SEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred Ecc-ceEEEECCCCCcHHHHHHHHhcCCC
Confidence 444 6889999999999999999998753
No 490
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=88.78 E-value=0.3 Score=48.99 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHh
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKM 173 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~el 173 (465)
..-+.|.|+||+|||+|..+++..+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999999864
No 491
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=88.75 E-value=0.28 Score=43.41 Aligned_cols=25 Identities=12% Similarity=0.112 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHH
Q 012383 148 VPLILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 148 ~p~glLL~GPPGtGKT~LAraIA~e 172 (465)
...-|+|.|++|+|||+|.+.+...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 3467899999999999999998765
No 492
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=88.68 E-value=1.7 Score=43.26 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=21.8
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHHHH
Q 012383 146 IKVPLILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 146 ~~~p~glLL~GPPGtGKT~LAraIA~e 172 (465)
...| -|.|.|++|+|||+|.+++...
T Consensus 32 ~~lp-~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 32 DSLP-AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp CCCC-EEEEECBTTSSHHHHHHHHHTS
T ss_pred ccCC-EEEEECCCCCcHHHHHHHHhCC
Confidence 3455 6778899999999999999874
No 493
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=88.64 E-value=0.25 Score=43.81 Aligned_cols=23 Identities=17% Similarity=0.036 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 012383 150 LILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 150 ~glLL~GPPGtGKT~LAraIA~e 172 (465)
.-|++.|++|+|||+|.+.+...
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999999876
No 494
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=88.58 E-value=0.25 Score=44.98 Aligned_cols=24 Identities=17% Similarity=0.189 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHH
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~e 172 (465)
..-|+|.|++|+|||+|.+.+...
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 357899999999999999998865
No 495
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=88.55 E-value=0.29 Score=44.20 Aligned_cols=24 Identities=13% Similarity=0.036 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHH
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~e 172 (465)
..-|+|.|++|+|||+|...+...
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 356889999999999999999875
No 496
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=88.54 E-value=0.63 Score=49.46 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHH-HHHHHHHhC
Q 012383 151 ILGIWGGKGQGKSFQ-CELVFAKMG 174 (465)
Q Consensus 151 glLL~GPPGtGKT~L-AraIA~elg 174 (465)
-++|.|++|||||.| ...|++...
T Consensus 164 R~~I~g~~g~GKT~Lal~~I~~q~~ 188 (510)
T 2ck3_A 164 RELIIGDRQTGKTSIAIDTIINQKR 188 (510)
T ss_dssp BCEEEESTTSSHHHHHHHHHHHTHH
T ss_pred EEEEecCCCCCchHHHHHHHHHHHh
Confidence 368999999999999 567777754
No 497
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=88.50 E-value=0.15 Score=44.67 Aligned_cols=24 Identities=21% Similarity=0.131 Sum_probs=10.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHH
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~e 172 (465)
..-|+|.|++|+|||+|...+...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEECCCCC------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457899999999999999988754
No 498
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=88.45 E-value=0.23 Score=51.72 Aligned_cols=21 Identities=29% Similarity=0.365 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 012383 152 LGIWGGKGQGKSFQCELVFAK 172 (465)
Q Consensus 152 lLL~GPPGtGKT~LAraIA~e 172 (465)
+.|.||+|+|||+|.++|+..
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 889999999999999999875
No 499
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=88.39 E-value=0.26 Score=44.36 Aligned_cols=23 Identities=17% Similarity=0.073 Sum_probs=19.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHH
Q 012383 149 PLILGIWGGKGQGKSFQCELVFA 171 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~ 171 (465)
+.-|+|.|++|+|||+|.+++..
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 34588999999999999999864
No 500
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=88.24 E-value=0.44 Score=48.04 Aligned_cols=33 Identities=24% Similarity=0.410 Sum_probs=26.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHHh---CCceEEec
Q 012383 149 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMS 181 (465)
Q Consensus 149 p~glLL~GPPGtGKT~LAraIA~el---g~~~i~vs 181 (465)
...+++.||+|+|||++++.++..+ |..++.++
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D 70 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID 70 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence 4578999999999999999988763 55555554
Done!