BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012384
(465 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2RDY|A Chain A, Crystal Structure Of A Putative Glycoside Hydrolase Family
Protein From Bacillus Halodurans
pdb|2RDY|B Chain B, Crystal Structure Of A Putative Glycoside Hydrolase Family
Protein From Bacillus Halodurans
Length = 803
Score = 354 bits (908), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 175/377 (46%), Positives = 233/377 (61%), Gaps = 7/377 (1%)
Query: 47 VNINLEMNYWQSLPCNLSECQEPLFDFLTYLSINGSKTAQVNYLASGWVIHHKTDIWAKS 106
+NIN E NYW + CNL+E +PL F+ L+ NG KTA++NY A GWV HH D+W ++
Sbjct: 371 LNINAEXNYWPAETCNLAELHKPLIHFIERLAANGKKTAEINYGARGWVAHHNADLWGQT 430
Query: 107 SA----DRGKVVWALWPMGGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLI 162
+ G VWA WP GG WL HLWEHY + D +L AYP+ + A F LDWLI
Sbjct: 431 APVGDFGHGDPVWAFWPXGGVWLTQHLWEHYTFGEDEAYLRDTAYPIXKEAALFCLDWLI 490
Query: 163 EGHDGYLETNPSTSPEHEFIAPDGKLACVSYSSTMDMAIIREVFSAIISAAEVLEKNEDA 222
E GYL T+PSTSPE F + K VS ++T D+++I E F I AA+ L +ED
Sbjct: 491 ENEAGYLVTSPSTSPEQRFRIGE-KGYAVSSATTXDLSLIAECFDNCIQAAKRLSIDED- 548
Query: 223 LVEKVLKSLPRLRPTKIAEDGSIMEWAQDFKDPEVHHRHLSHLFGLFPGHTITIEKNPDL 282
V+ + + RL P +I + G + EW+ DF+D +VHHRH+SHL G++PG IT + P+L
Sbjct: 549 FVKALSDAKQRLLPLQIGKRGQLQEWSNDFEDEDVHHRHVSHLVGIYPGRLITEQSAPNL 608
Query: 283 CKAAEKTLQKRGEEGPGWSITWKTALWARLHDQEHAYRMVKRLFNLVDPEHEKHFEGGLY 342
+AA+ +L+ RG+EG GWS+ WK +LWAR D R++ L+ + GG+Y
Sbjct: 609 FEAAKTSLEIRGDEGTGWSLGWKISLWARFKDGNRCERLLSNXLTLIKEDESXQHRGGVY 668
Query: 343 SNLFAAHPPFQIDANFGFTAAVAEMLVQSTLNDLYLLPALPWDKWSSGCVKGLKARGGET 402
+NLF AHPPFQID NF TA +AE L+QS L LPALP D W G VKGL+ RGG
Sbjct: 669 ANLFGAHPPFQIDGNFSATAGIAEXLLQSHQGYLEFLPALP-DSWKDGYVKGLRGRGGYE 727
Query: 403 VSICWKDGDLHEVGIYS 419
V + W +G L +V I S
Sbjct: 728 VDLAWTNGALVKVEIVS 744
>pdb|2EAB|A Chain A, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum (Apo Form)
pdb|2EAB|B Chain B, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum (Apo Form)
pdb|2EAC|A Chain A, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum In Complex With
Deoxyfuconojirimycin
pdb|2EAC|B Chain B, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum In Complex With
Deoxyfuconojirimycin
Length = 899
Score = 167 bits (423), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 140/489 (28%), Positives = 215/489 (43%), Gaps = 104/489 (21%)
Query: 46 HVNINLEMNYWQSLPCNLSECQEPLFDFLTYLSINGSKTAQVNYLAS------------- 92
H+N+NL+MNYW + N+ E EPL +++ L G TA+V A
Sbjct: 420 HMNVNLQMNYWPTYSANMGELAEPLIEYVEGLVKPGRVTAKVYAGAETTNPETTPIGEGE 479
Query: 93 GWVIHHKTDIWAKSSADRGKVVWALWPMGGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEG 152
G++ H + + ++ + W P W+ +++E Y Y+ D L+ R Y LL+
Sbjct: 480 GYMAHTENTAYGWTAPGQ-SFSWGWSPAAVPWILQNVYEAYEYSGDPALLD-RVYALLKE 537
Query: 153 CASFLLDWLI----EGHDGYLETNPSTSPEHEFIAPDGKLACVSYSSTMDMAIIREVFSA 208
+ F +++++ L T + SPE + DG +Y S++ ++ + A
Sbjct: 538 ESHFYVNYMLHKAGSSSGDRLTTGVAYSPEQGPLGTDGN----TYESSLVWQMLNDAIEA 593
Query: 209 IIS--------------AAEVLEKNE-----DALVEK---VLKSLPRLRPTKIAEDGSIM 246
+ +A+ KN+ DA + KSL L+P ++ + G I
Sbjct: 594 AKAKGDPDGLVGNTTDCSADNWAKNDSGNFTDANANRSWSCAKSL--LKPIEVGDSGQIK 651
Query: 247 EW-----AQDFKDPEV--------HHRHLSHLFGLFPGHTITIEKNPDLCKAAEKTLQKR 293
EW KD HRH+SHL GLFPG ITI+ N + AA+ +L+ R
Sbjct: 652 EWYFEGALGKKKDGSTISGYQADNQHRHMSHLLGLFPGDLITID-NSEYMDAAKTSLRYR 710
Query: 294 GEEG------PGWSITWKTALWARLHDQEHAYRMVKRLFNLVDPEHEKHFEGGLYSNLFA 347
+G GW+I + WAR D Y++V E + +Y+NLF
Sbjct: 711 CFKGNVLQSNTGWAIGQRINSWARTGDGNTTYQLV-----------ELQLKNAMYANLFD 759
Query: 348 AHPPFQIDANFGFTAAVAEMLVQST-----------LNDLYLLPALPWDKWSSGCVKGLK 396
H PFQID NFG T+ V EML+QS +N +LPALP D W+ G V GL
Sbjct: 760 YHAPFQIDGNFGNTSGVDEMLLQSNSTFTDTAGKKYVNYTNILPALP-DAWAGGSVSGLV 818
Query: 397 ARGGETVSICWKDGDLHEVGIYSNYSNNDHDSFKTLHYRGTSVKVNLSAGKIYTFNRQLK 456
ARG TV WK+G EV + SN +G V ++AG + +
Sbjct: 819 ARGNFTVGTTWKNGKATEVRLTSN--------------KGKQAAVKITAGGAQNYEVKNG 864
Query: 457 CTNLHQSIV 465
T ++ +V
Sbjct: 865 DTAVNAKVV 873
>pdb|2EAD|A Chain A, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum In Complex With Substrate
pdb|2EAD|B Chain B, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum In Complex With Substrate
Length = 899
Score = 165 bits (417), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 139/489 (28%), Positives = 214/489 (43%), Gaps = 104/489 (21%)
Query: 46 HVNINLEMNYWQSLPCNLSECQEPLFDFLTYLSINGSKTAQVNYLAS------------- 92
H+N+NL+MNYW + N+ E EPL +++ L G TA+V A
Sbjct: 420 HMNVNLQMNYWPTYSANMGELAEPLIEYVEGLVKPGRVTAKVYAGAETTNPETTPIGEGE 479
Query: 93 GWVIHHKTDIWAKSSADRGKVVWALWPMGGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEG 152
G++ H + + ++ + W P W+ +++E Y Y+ D L+ R Y LL+
Sbjct: 480 GYMAHTENTAYGWTAPGQ-SFSWGWSPAAVPWILQNVYEAYEYSGDPALLD-RVYALLKE 537
Query: 153 CASFLLDWLI----EGHDGYLETNPSTSPEHEFIAPDGKLACVSYSSTMDMAIIREVFSA 208
+ F +++++ L T + SP + DG +Y S++ ++ + A
Sbjct: 538 ESHFYVNYMLHKAGSSSGDRLTTGVAYSPAQGPLGTDGN----TYESSLVWQMLNDAIEA 593
Query: 209 IIS--------------AAEVLEKNE-----DALVEK---VLKSLPRLRPTKIAEDGSIM 246
+ +A+ KN+ DA + KSL L+P ++ + G I
Sbjct: 594 AKAKGDPDGLVGNTTDCSADNWAKNDSGNFTDANANRSWSCAKSL--LKPIEVGDSGQIK 651
Query: 247 EW-----AQDFKDPEV--------HHRHLSHLFGLFPGHTITIEKNPDLCKAAEKTLQKR 293
EW KD HRH+SHL GLFPG ITI+ N + AA+ +L+ R
Sbjct: 652 EWYFEGALGKKKDGSTISGYQADNQHRHMSHLLGLFPGDLITID-NSEYMDAAKTSLRYR 710
Query: 294 GEEG------PGWSITWKTALWARLHDQEHAYRMVKRLFNLVDPEHEKHFEGGLYSNLFA 347
+G GW+I + WAR D Y++V E + +Y+NLF
Sbjct: 711 CFKGNVLQSNTGWAIGQRINSWARTGDGNTTYQLV-----------ELQLKNAMYANLFD 759
Query: 348 AHPPFQIDANFGFTAAVAEMLVQST-----------LNDLYLLPALPWDKWSSGCVKGLK 396
H PFQID NFG T+ V EML+QS +N +LPALP D W+ G V GL
Sbjct: 760 YHAPFQIDGNFGNTSGVDEMLLQSNSTFTDTAGKKYVNYTNILPALP-DAWAGGSVSGLV 818
Query: 397 ARGGETVSICWKDGDLHEVGIYSNYSNNDHDSFKTLHYRGTSVKVNLSAGKIYTFNRQLK 456
ARG TV WK+G EV + SN +G V ++AG + +
Sbjct: 819 ARGNFTVGTTWKNGKATEVRLTSN--------------KGKQAAVKITAGGAQNYEVKNG 864
Query: 457 CTNLHQSIV 465
T ++ +V
Sbjct: 865 DTAVNAKVV 873
>pdb|2EAE|A Chain A, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum In Complexes With Products
Length = 898
Score = 164 bits (416), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 139/489 (28%), Positives = 214/489 (43%), Gaps = 104/489 (21%)
Query: 46 HVNINLEMNYWQSLPCNLSECQEPLFDFLTYLSINGSKTAQVNYLA-------------S 92
H+N+NL+MNYW + N+ E EPL +++ L G TA+V A
Sbjct: 419 HMNVNLQMNYWPTYSANMGELAEPLIEYVEGLVKPGRVTAKVYAGAETTNPETTPIGEGE 478
Query: 93 GWVIHHKTDIWAKSSADRGKVVWALWPMGGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEG 152
G++ H + + ++ + W P W+ +++E Y Y+ D L+ R Y LL+
Sbjct: 479 GYMAHTENTAYGWTAPGQ-SFSWGWSPAAVPWILQNVYEAYEYSGDPALLD-RVYALLKE 536
Query: 153 CASFLLDWLI----EGHDGYLETNPSTSPEHEFIAPDGKLACVSYSSTMDMAIIREVFSA 208
+ F +++++ L T + SPE + DG +Y S++ ++ + A
Sbjct: 537 ESHFYVNYMLHKAGSSSGDRLTTGVAYSPEQGPLGTDGN----TYESSLVWQMLNDAIEA 592
Query: 209 IIS--------------AAEVLEKNE-----DALVEK---VLKSLPRLRPTKIAEDGSIM 246
+ +A+ KN+ DA + KSL L+P ++ + G I
Sbjct: 593 AKAKGDPDGLVGNTTDCSADNWAKNDSGNFTDANANRSWSCAKSL--LKPIEVGDSGQIK 650
Query: 247 EW-----AQDFKDPEV--------HHRHLSHLFGLFPGHTITIEKNPDLCKAAEKTLQKR 293
EW KD HRH+SHL GLFPG ITI+ N + AA+ +L+ R
Sbjct: 651 EWYFEGALGKKKDGSTISGYQADNQHRHMSHLLGLFPGDLITID-NSEYMDAAKTSLRYR 709
Query: 294 GEEG------PGWSITWKTALWARLHDQEHAYRMVKRLFNLVDPEHEKHFEGGLYSNLFA 347
+G GW+I + WAR D Y++V E + +Y+NLF
Sbjct: 710 CFKGNVLQSNTGWAIGQRINSWARTGDGNTTYQLV-----------ELQLKNAMYANLFD 758
Query: 348 AHPPFQIDANFGFTAAVAEMLVQST-----------LNDLYLLPALPWDKWSSGCVKGLK 396
H PFQI NFG T+ V EML+QS +N +LPALP D W+ G V GL
Sbjct: 759 YHAPFQIAGNFGNTSGVDEMLLQSNSTFTDTAGKKYVNYTNILPALP-DAWAGGSVSGLV 817
Query: 397 ARGGETVSICWKDGDLHEVGIYSNYSNNDHDSFKTLHYRGTSVKVNLSAGKIYTFNRQLK 456
ARG TV WK+G EV + SN +G V ++AG + +
Sbjct: 818 ARGNFTVGTTWKNGKATEVRLTSN--------------KGKQAAVKITAGGAQNYEVKNG 863
Query: 457 CTNLHQSIV 465
T ++ +V
Sbjct: 864 DTAVNAKVV 872
>pdb|1M5N|S Chain S, Crystal Structure Of Heat Repeats (1-11) Of Importin B
Bound To The Non-Classical Nls(67-94) Of Pthrp
Length = 485
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 364 VAEMLVQSTLNDLYLLPALPWDKWSSGCVKGLKARGGETVSICWKDGDLHEVG 416
+ E+L ++ +ND+YL P L ++GL A ++CW L E
Sbjct: 435 ICELLPEAAINDVYLAPLL------QCLIEGLSAEPRVASNVCWAFSSLAEAA 481
>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb- Domain
pdb|2Q5D|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|2Q5D|B Chain B, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|3LWW|A Chain A, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
pdb|3LWW|C Chain C, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
Length = 876
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Query: 364 VAEMLVQSTLNDLYLLPALPWDKWSSGCVKGLKARGGETVSICWKDGDLHEVGIYSNYSN 423
+ E+L ++ +ND+YL P L ++GL A ++CW L E +
Sbjct: 435 ICELLPEAAINDVYLAPLL------QCLIEGLSAEPRVASNVCWAFSSLAEAAYEAADVA 488
Query: 424 NDHDSFKT 431
+D + T
Sbjct: 489 DDQEEPAT 496
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
pdb|1QGR|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha (Ii Crystal Form, Grown At Low Ph)
Length = 876
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Query: 364 VAEMLVQSTLNDLYLLPALPWDKWSSGCVKGLKARGGETVSICWKDGDLHEVGIYSNYSN 423
+ E+L ++ +ND+YL P L ++GL A ++CW L E +
Sbjct: 435 ICELLPEAAINDVYLAPLL------QCLIEGLSAEPRVASNVCWAFSSLAEAAYEAADVA 488
Query: 424 NDHDSFKT 431
+D + T
Sbjct: 489 DDQEEPAT 496
>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex
pdb|1UKL|B Chain B, Crystal Structure Of Importin-Beta And Srebp-2 Complex
Length = 876
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Query: 364 VAEMLVQSTLNDLYLLPALPWDKWSSGCVKGLKARGGETVSICWKDGDLHEVGIYSNYSN 423
+ E+L ++ +ND+YL P L ++GL A ++CW L E +
Sbjct: 435 ICELLPEAAINDVYLAPLL------QCLIEGLSAEPRVASNVCWAFSSLAEAAYEAADVA 488
Query: 424 NDHDSFKT 431
+D + T
Sbjct: 489 DDQEEPAT 496
>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In
Complex With The Ibb-Domain Of Snurportin1 (1-65)
Length = 762
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Query: 364 VAEMLVQSTLNDLYLLPALPWDKWSSGCVKGLKARGGETVSICWKDGDLHEVGIYSNYSN 423
+ E+L ++ +ND+YL P L ++GL A ++CW L E +
Sbjct: 310 ICELLPEAAINDVYLAPLLQC------LIEGLSAEPRVASNVCWAFSSLAEAAYEAADVA 363
Query: 424 NDHDSFKT 431
+D + T
Sbjct: 364 DDQEEPAT 371
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,029,511
Number of Sequences: 62578
Number of extensions: 697836
Number of successful extensions: 1772
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1745
Number of HSP's gapped (non-prelim): 12
length of query: 465
length of database: 14,973,337
effective HSP length: 102
effective length of query: 363
effective length of database: 8,590,381
effective search space: 3118308303
effective search space used: 3118308303
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)