Query 012384
Match_columns 465
No_of_seqs 147 out of 1014
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 02:04:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012384.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012384hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK13807 maltose phosphorylase 100.0 4.2E-47 9.1E-52 412.9 36.7 399 4-451 296-756 (756)
2 COG1554 ATH1 Trehalose and mal 100.0 6.4E-46 1.4E-50 391.9 32.3 378 7-426 297-750 (772)
3 PF03632 Glyco_hydro_65m: Glyc 100.0 2.2E-41 4.7E-46 340.7 16.9 315 23-374 2-362 (370)
4 KOG4125 Acid trehalase [Carboh 99.9 6.6E-24 1.4E-28 208.8 20.0 334 5-368 233-598 (682)
5 TIGR01577 oligosac_amyl oligos 99.0 5.5E-09 1.2E-13 113.9 15.9 277 43-374 290-605 (616)
6 COG3387 SGA1 Glucoamylase and 98.8 1.4E-08 3E-13 109.6 9.2 334 2-379 223-601 (612)
7 PF05592 Bac_rhamnosid: Bacter 98.3 6.3E-06 1.4E-10 88.1 11.9 269 123-426 207-506 (509)
8 TIGR01535 glucan_glucosid gluc 97.9 0.00017 3.6E-09 78.6 15.1 258 58-381 307-631 (648)
9 PF06202 GDE_C: Amylo-alpha-1, 97.6 0.0051 1.1E-07 63.1 18.4 240 121-367 85-368 (370)
10 PF04685 DUF608: Protein of un 97.5 0.00012 2.5E-09 74.8 4.7 168 55-235 23-203 (365)
11 COG3408 GDB1 Glycogen debranch 97.4 0.0074 1.6E-07 65.9 17.3 300 60-401 298-637 (641)
12 PF03633 Glyco_hydro_65C: Glyc 97.2 0.00092 2E-08 48.6 5.7 42 380-426 1-42 (54)
13 COG3459 Cellobiose phosphoryla 97.2 0.018 3.9E-07 63.8 17.6 104 123-238 672-798 (1056)
14 PRK10137 alpha-glucosidase; Pr 96.1 0.84 1.8E-05 51.0 20.9 45 124-169 421-465 (786)
15 TIGR01561 gde_arch glycogen de 95.3 0.2 4.4E-06 54.1 12.4 105 122-235 350-461 (575)
16 PRK13271 treA trehalase; Provi 92.3 4 8.6E-05 44.2 15.0 86 42-160 154-248 (569)
17 COG4354 Predicted bile acid be 89.0 0.57 1.2E-05 49.5 4.9 92 118-218 440-531 (721)
18 PRK13272 treA trehalase; Provi 85.7 53 0.0011 35.5 17.4 86 42-160 155-249 (542)
19 KOG2119 Predicted bile acid be 82.8 4.3 9.3E-05 44.2 7.6 97 126-234 563-660 (879)
20 TIGR01531 glyc_debranch glycog 80.5 39 0.00085 40.4 14.8 37 122-158 1093-1151(1464)
21 PF06824 DUF1237: Protein of u 79.1 9.3 0.0002 39.6 8.4 114 122-235 130-269 (424)
22 PLN02567 alpha,alpha-trehalase 75.4 5.3 0.00012 43.2 5.8 86 42-159 147-241 (554)
23 PF01204 Trehalase: Trehalase; 62.0 6.8 0.00015 42.1 3.2 86 42-159 123-217 (512)
24 PLN02703 beta-fructofuranosida 50.2 3.7E+02 0.0079 29.2 13.4 146 55-211 180-341 (618)
25 PRK13270 treF trehalase; Provi 47.7 4E+02 0.0087 28.9 19.2 166 196-372 349-546 (549)
26 PF13428 TPR_14: Tetratricopep 45.7 34 0.00073 23.0 3.5 24 304-327 6-29 (44)
27 PF07721 TPR_4: Tetratricopept 41.7 40 0.00086 20.0 3.0 23 301-323 3-25 (26)
28 PF10437 Lip_prot_lig_C: Bacte 41.5 52 0.0011 25.8 4.5 27 395-421 11-38 (86)
29 PF00723 Glyco_hydro_15: Glyco 41.1 57 0.0012 34.3 6.1 89 122-235 128-221 (448)
30 TIGR00756 PPR pentatricopeptid 39.4 69 0.0015 19.3 4.1 23 305-327 6-28 (35)
31 PF00515 TPR_1: Tetratricopept 38.6 63 0.0014 19.9 3.8 24 304-327 6-29 (34)
32 PF13374 TPR_10: Tetratricopep 38.5 61 0.0013 20.6 3.9 27 302-328 5-31 (42)
33 cd00249 AGE AGE domain; N-acyl 37.6 2.1E+02 0.0045 28.9 9.5 42 122-169 117-158 (384)
34 PF07719 TPR_2: Tetratricopept 37.5 62 0.0013 19.7 3.6 24 304-327 6-29 (34)
35 PF11344 DUF3146: Protein of u 37.0 39 0.00085 26.1 2.9 64 385-455 12-79 (80)
36 PF14853 Fis1_TPR_C: Fis1 C-te 36.1 58 0.0013 23.4 3.6 27 305-332 7-33 (53)
37 PF09244 DUF1964: Domain of un 35.7 1.3E+02 0.0028 22.3 5.2 57 389-450 3-59 (68)
38 PF08695 Coa1: Cytochrome oxid 35.0 1.2E+02 0.0027 25.1 6.1 65 375-451 48-114 (116)
39 PF13176 TPR_7: Tetratricopept 34.0 82 0.0018 20.1 3.8 24 304-327 4-27 (36)
40 COG1331 Highly conserved prote 34.0 1.9E+02 0.004 32.1 8.5 52 121-177 274-325 (667)
41 PF06627 DUF1153: Protein of u 34.0 43 0.00093 26.8 2.8 37 196-233 39-75 (90)
42 PF13041 PPR_2: PPR repeat fam 32.7 96 0.0021 21.2 4.3 23 305-327 9-31 (50)
43 PRK09744 DNA-binding transcrip 31.1 23 0.0005 27.3 0.8 42 204-246 8-51 (75)
44 PF13811 DUF4186: Domain of un 30.7 63 0.0014 27.0 3.3 27 136-162 21-48 (111)
45 PF13174 TPR_6: Tetratricopept 30.2 76 0.0017 19.0 3.1 24 304-327 5-28 (33)
46 PF12857 TOBE_3: TOBE-like dom 29.9 1.3E+02 0.0029 21.7 4.8 32 390-421 9-42 (58)
47 PLN03005 beta-fructofuranosida 29.3 4.7E+02 0.01 28.1 10.2 142 56-211 133-288 (550)
48 PF13181 TPR_8: Tetratricopept 29.0 1.2E+02 0.0027 18.4 4.0 24 304-327 6-29 (34)
49 PLN02973 beta-fructofuranosida 27.6 8E+02 0.017 26.5 13.3 141 56-211 154-309 (571)
50 PF12854 PPR_1: PPR repeat 26.0 1.1E+02 0.0024 19.4 3.3 21 304-324 12-32 (34)
51 KOG0602 Neutral trehalase [Car 25.7 71 0.0015 34.7 3.6 41 124-165 240-280 (600)
52 PF12690 BsuPI: Intracellular 24.9 3.3E+02 0.0071 21.3 6.5 54 395-454 8-67 (82)
53 PF13812 PPR_3: Pentatricopept 24.3 1.7E+02 0.0037 17.5 4.1 23 305-327 7-29 (34)
54 TIGR03079 CH4_NH3mon_ox_B meth 23.3 2.2E+02 0.0047 29.1 6.2 40 373-413 55-97 (399)
55 PF12518 DUF3721: Protein of u 22.8 64 0.0014 21.0 1.6 16 79-95 5-20 (34)
56 cd00249 AGE AGE domain; N-acyl 21.6 5.9E+02 0.013 25.5 9.6 44 122-170 55-99 (384)
57 PF06865 DUF1255: Protein of u 21.5 2.3E+02 0.0051 23.0 5.0 47 409-459 9-55 (94)
58 PF13432 TPR_16: Tetratricopep 21.1 2.7E+02 0.0058 19.7 5.1 30 298-327 30-59 (65)
59 PF04744 Monooxygenase_B: Mono 20.1 3.7E+02 0.008 27.5 7.1 40 373-413 35-77 (381)
No 1
>PRK13807 maltose phosphorylase; Provisional
Probab=100.00 E-value=4.2e-47 Score=412.90 Aligned_cols=399 Identities=16% Similarity=0.074 Sum_probs=295.4
Q ss_pred cccc-hhhccc------hhhHHHHHHhhhhhhcccCC--C--CCCCCC-C-CCCc--cccccccchhccc-cCCCCcccc
Q 012384 4 HPWW-SFYSSL------VDICLFLLHDLELRLPTCRA--Y--GTKILV-Q-HGTP--HVNINLEMNYWQS-LPCNLSECQ 67 (465)
Q Consensus 4 ~~ww-~~~~~~------~d~~~~~~~~~rYll~sssr--~--g~~p~~-l-~~dy--h~n~N~qm~ywp~-~~~n~~e~~ 67 (465)
++.| ++|+++ .+..++...+..|.|.++.+ . -++||+ | +.+| |.+|++|+++.|+ +..+.||++
T Consensus 296 ~~~w~~~W~~~di~I~gd~~~q~alr~~~fhL~~s~~~~~~~~~i~a~GLsge~Y~Gh~FWDtE~f~lP~~~~~~~Pe~A 375 (756)
T PRK13807 296 TAAWAKRWEKSDVVIEGDDAAQQGIRFNIFQLFSTYYGEDARLNIGPKGFTGEKYGGATYWDTEAYCVPFYLATADPEVT 375 (756)
T ss_pred HHHHHHHHHHCCeEEcCCHHHHHHHHHHHHHHHhccCCCCCCCCcCCCCCCcCCcCCeeeeccchhhhhhhhhccCHHHH
Confidence 4679 999986 24456788999999877743 2 135555 5 4446 9999999999999 567999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHhcCCCceEEccccCCCCCCCCCCCCccccc---CccCHHHHHHHHHHHHHhcCCHHHHHH
Q 012384 68 EPLFDFLTYLSINGSKTAQVNYLASGWVIHHKTDIWAKSSADRGKVVWAL---WPMGGAWLCTHLWEHYNYTMDRDFLEK 144 (465)
Q Consensus 68 ~~l~~~~~~~l~~~r~~A~~~yG~~G~~~p~~~~~~g~~~~~~~~~~~~~---~~~~~aw~a~~~w~yy~~TgD~~fL~~ 144 (465)
+.|++||++.|+.||++|++ +|++||+|||++. .|. +.++.|.. ..+.++.||+++|+||+.|+|.+||++
T Consensus 376 r~lL~YR~~~L~~Ar~~A~~-~g~~GA~yPW~s~-~G~----E~~~~w~~~~~e~HI~adIaya~~~Y~~~TgD~~fl~~ 449 (756)
T PRK13807 376 RNLLKYRYNQLPGAKENAKK-QGLKGALYPMVTF-NGI----ECHNEWEITFEEIHRNGAIAYAIYNYTNYTGDESYLKE 449 (756)
T ss_pred HHHHHHHHHhHHHHHHHHHH-cCCCccccceEcC-CCC----cCCCCcCCCceeEechHHHHHHHHHHHHHhCCHHHHHh
Confidence 99999999999999999999 7999999999874 443 22334422 245789999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcccCC-CCeEEECCCCCC-CCCcCCCCCCccccccCchHHHHHHHHHHHHHHHHHHH-------
Q 012384 145 RAYPLLEGCASFLLDWLIEGH-DGYLETNPSTSP-EHEFIAPDGKLACVSYSSTMDMAIIREVFSAIISAAEV------- 215 (465)
Q Consensus 145 ~~~p~l~~~A~F~~~~l~~~~-~G~y~i~ps~sP-E~~~~~~~G~~~~~~~n~t~d~~~v~~~l~~~~~~a~~------- 215 (465)
.++|||.|+|+||.+++.+++ +|+|+|..+++| |++. .++||+|||.|++++|+.++++++.
T Consensus 450 ~G~e~l~etArfw~s~~~~~~~~~~y~I~~V~GPDEY~~---------~vdNNayTN~ma~~~l~~A~~~~~~l~~~~~~ 520 (756)
T PRK13807 450 EGLEVLVEIARFWADRVHFSKRKNKYMIHGVTGPNEYEN---------NVNNNWYTNYIAAWTLEYTLENLDKVKKEAPA 520 (756)
T ss_pred cCHHHHHHHHHHHHHheEEeCCCCeEEECCcccccccCC---------CCCCchhHHHHHHHHHHHHHHHHHHhchhhHH
Confidence 999999999999999998765 789999999999 9984 5999999999999999999999864
Q ss_pred -hCCCcHHHHHHHHHHcCCCC-CCccCCCC---------ceeecccCCCCCCC----Cccch------------hhhhcc
Q 012384 216 -LEKNEDALVEKVLKSLPRLR-PTKIAEDG---------SIMEWAQDFKDPEV----HHRHL------------SHLFGL 268 (465)
Q Consensus 216 -Lg~~~~~~~~~w~~i~~~L~-p~~~~~~G---------~l~ew~~~~~~~~~----~hrh~------------s~L~~l 268 (465)
|+++ +++.++|++++++|. |++ +..| .+.+|..+..+.+. .|-|. --++.+
T Consensus 521 ~l~~~-~~e~~~w~~ia~~~~lp~~-~~~gi~~q~dgy~~l~~~d~~~~~~~~~~~~~~~~~~~i~~~qviKQADvvll~ 598 (756)
T PRK13807 521 RLNVT-EEELAKWQDIVDKMYLPYD-EELGIFVQHDGFLDKDLRPVSDLPPDQRPINQNWSWDRILRSPFIKQADVLQGI 598 (756)
T ss_pred HhcCC-HHHHHHHHHHHhCeEeccc-CCCCEEEccCCccccccCchhhcccccCCcccccCHHHHhcccEecHHHHHHHh
Confidence 5555 667889999999999 765 1222 22233221111000 01111 124455
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhhCCCCCChHHHHHHHHHHhcCChHHHHHHHHHHHhccCCcccc-cCCCCccccccc
Q 012384 269 FPGHTITIEKNPDLCKAAEKTLQKRGEEGPGWSITWKTALWARLHDQEHAYRMVKRLFNLVDPEHEK-HFEGGLYSNLFA 347 (465)
Q Consensus 269 ~P~~~i~~~~~p~l~~aa~~tl~~r~~~~~gws~~~~a~~aArlgd~e~A~~~l~~~~~~~~~~~~~-~~~~g~~~nl~~ 347 (465)
||+... -+++........++.|+.|+|++|++++++++|++|+.++|+++|.+.+. +|+++.+ +..+|+
T Consensus 599 yll~~~---f~~~~~~~n~~yYe~rT~HdSsLS~~i~ai~aa~~g~~~~A~~~f~~a~~-~Dl~~~~~~t~~Gi------ 668 (756)
T PRK13807 599 YFFEDR---FTKEEKRRNFDFYEPLTVHESSLSPCVHSILAAELGKEDKAVELYLRTAR-LDLDNYNNDTEDGL------ 668 (756)
T ss_pred ccCCCC---CCHHHHHHHHHHhcCcccCCCCCCHHHHHHHHHhcCCHHHHHHHHHHHHH-hhhhhccCCCCcch------
Confidence 665421 35666666677777788899999999999999999999999999999887 4543321 111222
Q ss_pred CCCCcccCccchhHHHHHHHHhh------ccCCeEEeCCCCCccccCceeecceeeecceEEEEEEeCCeEEEEEEEeCC
Q 012384 348 AHPPFQIDANFGFTAAVAEMLVQ------STLNDLYLLPALPWDKWSSGCVKGLKARGGETVSICWKDGDLHEVGIYSNY 421 (465)
Q Consensus 348 ~h~pfqidg~~g~~~av~emLlq------s~~g~i~l~PalP~~~W~~gs~~gL~arG~~~V~~~~~~g~~~~~~i~s~~ 421 (465)
+.+.++|.+.++++ .+++.|+|.|.|| ++|+..+|+ ++.||. .+++..+..++ +|+...
T Consensus 669 ---------H~~~~gG~w~~vv~Gf~Glr~~~~~L~~~P~LP-~~w~~l~f~-~~~rG~-~l~v~i~~~~~---~i~~~~ 733 (756)
T PRK13807 669 ---------HITSMAGSWLAIVQGFAGMRVRDGQLSFAPFLP-KEWTSYSFK-INFRGR-LLKVKVDKQEV---TIELLS 733 (756)
T ss_pred ---------hhhcchHHHHHHHheecceEecCCeEEEeCCCC-CccceeEEE-EEECCe-EEEEEEECCEE---EEEEcC
Confidence 24566666666655 4556899999999 999999997 999987 35555566653 455445
Q ss_pred CCCcccceeeeecCCeEEEEEccCCcEEEE
Q 012384 422 SNNDHDSFKTLHYRGTSVKVNLSAGKIYTF 451 (465)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~i 451 (465)
|.+++ +.+. | ..+.+.+|++.+|
T Consensus 734 g~~l~---i~v~--g--~~~~l~~g~~~~~ 756 (756)
T PRK13807 734 GEPLT---IEVY--G--KKVELKKGVTVTV 756 (756)
T ss_pred CCcEE---EEEC--C--EEEEEcCCcEeeC
Confidence 55566 4332 2 3344558887764
No 2
>COG1554 ATH1 Trehalose and maltose hydrolases (possible phosphorylases) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.4e-46 Score=391.89 Aligned_cols=378 Identities=17% Similarity=0.125 Sum_probs=282.9
Q ss_pred c-hhhccch------hhHHHHHHhhhhhhcccCC----CCCCCCC-C-CCCc--cccccccchhccccCCCCccccHHHH
Q 012384 7 W-SFYSSLV------DICLFLLHDLELRLPTCRA----YGTKILV-Q-HGTP--HVNINLEMNYWQSLPCNLSECQEPLF 71 (465)
Q Consensus 7 w-~~~~~~~------d~~~~~~~~~rYll~sssr----~g~~p~~-l-~~dy--h~n~N~qm~ywp~~~~n~~e~~~~l~ 71 (465)
| ++|+++- +.+++.-.|..|.|.+.++ .-++||+ | |-+| |.+|+||.+..|++..+.|++++.|+
T Consensus 297 W~~~W~~adI~Iegd~~~Q~avRfnLFhL~~~~~~~d~rlsIgaKGltGegY~GhvfWDTEif~lP~l~~t~P~vArnLL 376 (772)
T COG1554 297 WDDLWEKADIEIEGDPEAQQAVRFNLFHLLQTTPGHDERLSIGAKGLTGEGYGGHVFWDTEIFVLPFLLFTDPEVARNLL 376 (772)
T ss_pred HHHHHHhcCEEecCCHHHHHHHHHHHHHHHhhccCcccCCCCCCCCcCccccCCeeeecchHHhhhhhhccChHHHHHHH
Confidence 6 9999882 5556788899999876663 2357776 4 5567 99999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHhcCCCceEEccccCCCCCCCCCCCCcccccC--------------ccCHHHHHHHHHHHHHhcC
Q 012384 72 DFLTYLSINGSKTAQVNYLASGWVIHHKTDIWAKSSADRGKVVWALW--------------PMGGAWLCTHLWEHYNYTM 137 (465)
Q Consensus 72 ~~~~~~l~~~r~~A~~~yG~~G~~~p~~~~~~g~~~~~~~~~~~~~~--------------~~~~aw~a~~~w~yy~~Tg 137 (465)
.||+++|+.|+++|++ +|.+||+|||+|...|.. .+++|+.. .+.++.||+++|+|+++||
T Consensus 377 ~YR~~~L~~Ak~nA~~-~G~~GAlyPW~S~~~G~E----~t~~w~~~~~~~~~~~~~~~~E~Hin~dIAyAv~~Y~q~Tg 451 (772)
T COG1554 377 LYRYNTLPGAKENAKK-YGLKGALYPWESATDGDE----CTPEWEATFERTGWRVASSDREIHINADIAYAVWNYWQVTG 451 (772)
T ss_pred HHHHhcCHHHHHHHHH-cCCCcccceeeecCCCCc----cCCcccccccccccccCccccceehhhHHHHHHHHHHhhcC
Confidence 9999999999999999 899999999988654542 23444321 2358999999999999999
Q ss_pred CHHHHHHhhHHHHHHHHHHHHHhcccCC-CCeEEECCCCCC-CCCcCCCCCCccccccCchHHHHHHHHHHHHHHHHHH-
Q 012384 138 DRDFLEKRAYPLLEGCASFLLDWLIEGH-DGYLETNPSTSP-EHEFIAPDGKLACVSYSSTMDMAIIREVFSAIISAAE- 214 (465)
Q Consensus 138 D~~fL~~~~~p~l~~~A~F~~~~l~~~~-~G~y~i~ps~sP-E~~~~~~~G~~~~~~~n~t~d~~~v~~~l~~~~~~a~- 214 (465)
|++||++.++|+|.++|+||++++..+. +|+|+|..+++| ||+. .++||+|||.|++++|+.|+++++
T Consensus 452 D~~yl~~~G~evl~etArFW~srv~~~~~~~~y~I~gV~GPdEY~~---------~InNN~fTN~ma~w~L~~ale~~~~ 522 (772)
T COG1554 452 DDSYLADCGLEVLLETARFWASRVHFSDRNGRYEIHGVTGPDEYHN---------HVNNNAFTNLMAAWNLEYALEILEW 522 (772)
T ss_pred cHHHHHhcCHHHHHHHHHHHHHHheecccCCeEEEecCcCchhhhc---------cccchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999864 899999999999 9984 599999999999999999999987
Q ss_pred -------HhCCCcHHHHHHHHHHcCCCC-CCccC------CCCcee--ecccCCCCCCCCccchhhhhccCCCCC--CCC
Q 012384 215 -------VLEKNEDALVEKVLKSLPRLR-PTKIA------EDGSIM--EWAQDFKDPEVHHRHLSHLFGLFPGHT--ITI 276 (465)
Q Consensus 215 -------~Lg~~~~~~~~~w~~i~~~L~-p~~~~------~~G~l~--ew~~~~~~~~~~hrh~s~L~~l~P~~~--i~~ 276 (465)
.|+++ .++.++|++|.++|. |++.+ .+|.+. ++. +...++.-...+.+ +-++. +..
T Consensus 523 ~~~~~~~~l~it-~ee~~~w~di~~~my~p~de~~gv~~Q~dgf~~l~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~ 596 (772)
T COG1554 523 LWSELREKLNVT-TEEIEKWADIAKKMYYPEDEELGVIAQFDGFLDLEEID--LDAYEAAAGPLSQL---LSYDRESVLR 596 (772)
T ss_pred HHHHHHHhcCCC-HHHHHHHHHHHHhcCCCCCcccCceeeccchhhhhhCC--hhhcccccCcchhh---hhhcccccch
Confidence 37888 889999999999999 76521 122221 211 11111111011111 00111 110
Q ss_pred ---CCCHHH---------------HHHHHHHHhhhCCCCCChHHHHHHHHHHhcCChHHHHHHHHHHHhccCCcccccCC
Q 012384 277 ---EKNPDL---------------CKAAEKTLQKRGEEGPGWSITWKTALWARLHDQEHAYRMVKRLFNLVDPEHEKHFE 338 (465)
Q Consensus 277 ---~~~p~l---------------~~aa~~tl~~r~~~~~gws~~~~a~~aArlgd~e~A~~~l~~~~~~~~~~~~~~~~ 338 (465)
-+++++ .+.-...++.|+.|++++|++.|++++|++|..++||+++.+.++ +|++|.+
T Consensus 597 ~q~iKQADvlm~~Yl~~~~F~~~~i~~N~dyY~~rTvh~SSLSp~ihaila~~lg~~~~Aye~~~~~a~-iDL~n~~--- 672 (772)
T COG1554 597 SQFIKQADVLMLLYLLPDLFSPETIKRNFDYYEPRTVHDSSLSPAIHAILAAELGKRDKAYEYFRRAAR-IDLDDVN--- 672 (772)
T ss_pred hhhhhhHHHHHHHHhhhccCCHHHhhccceecccccccccccchHHHHHHHhhhCcHHHHHHHHHHHHh-ccccccC---
Confidence 033443 333344445668899999999999999999999999999999888 5664422
Q ss_pred CCcccccccCCCCcccCccc-hhHHHHHHHHhh------ccCCeEEeCCCCCccccCceeecceeeecceEEEEEEeCCe
Q 012384 339 GGLYSNLFAAHPPFQIDANF-GFTAAVAEMLVQ------STLNDLYLLPALPWDKWSSGCVKGLKARGGETVSICWKDGD 411 (465)
Q Consensus 339 ~g~~~nl~~~h~pfqidg~~-g~~~av~emLlq------s~~g~i~l~PalP~~~W~~gs~~gL~arG~~~V~~~~~~g~ 411 (465)
+.+ -||.| +.++|++..+++ .++|.+.+.|.|| +.|+..+|. +..||- .|.+...++
T Consensus 673 ~~t------------~dGiHiasm~g~W~aiV~GF~Gl~~~~~~l~~~P~LP-~~W~~l~F~-~~~rg~-~l~v~v~~~- 736 (772)
T COG1554 673 GST------------DDGIHIASMGGIWLAIVQGFAGLRTRDGQLSLAPFLP-DAWTRLKFP-LNWRGR-LLKVDVDGA- 736 (772)
T ss_pred CCc------------cchHhHHHHHHhHHHHHhhhcceEeeCCcEeECCCCc-ccccceEEE-EEEcce-EEEEEecCc-
Confidence 111 35543 456677777765 4567899999999 999999997 999975 455554443
Q ss_pred EEEEEEEeCCCC-Ccc
Q 012384 412 LHEVGIYSNYSN-NDH 426 (465)
Q Consensus 412 ~~~~~i~s~~~~-~~~ 426 (465)
.++++...|. .+.
T Consensus 737 --~v~~~~~~~~~~l~ 750 (772)
T COG1554 737 --AVTLTLEGGQTPLE 750 (772)
T ss_pred --ceEEEecCCCccee
Confidence 4566666665 555
No 3
>PF03632 Glyco_hydro_65m: Glycosyl hydrolase family 65 central catalytic domain; InterPro: IPR005195 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The family of glycosyl hydrolases (GH65 from CAZY) which contains this domain includes vacuolar acid trehalase and maltose phosphorylase. Maltose phosphorylase (MP) is a dimeric enzyme that catalyzes the conversion of maltose and inorganic phosphate into beta-D-glucose-1-phosphate and glucose. The central domain is the catalytic domain, which binds a phosphate ion that is proximal the the highly conserved Glu. The arrangement of the phosphate and the glutamate is thought to cause nucelophilic attack on the anomeric carbon atom []. The catalytic domain also forms the majority of the dimerisation interface.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1H54_A.
Probab=100.00 E-value=2.2e-41 Score=340.68 Aligned_cols=315 Identities=17% Similarity=0.139 Sum_probs=207.2
Q ss_pred hhhhhhcccC-CCC---CCCCC-C-CCCc--cccccccchhccccCCCCccccHHHHHHHHHHHHhHHHHHHHhcCCCce
Q 012384 23 DLELRLPTCR-AYG---TKILV-Q-HGTP--HVNINLEMNYWQSLPCNLSECQEPLFDFLTYLSINGSKTAQVNYLASGW 94 (465)
Q Consensus 23 ~~rYll~sss-r~g---~~p~~-l-~~dy--h~n~N~qm~ywp~~~~n~~e~~~~l~~~~~~~l~~~r~~A~~~yG~~G~ 94 (465)
++.|.|.++. +.+ ++||+ | +.+| |.+|++|+.+.|++...+||+++.|++||.++|+.||++|++ +|++||
T Consensus 2 ~~lfhL~~~~~~~~~~~~i~a~GLsge~Y~Gh~FWDtE~~~~P~~~~~~Pe~Ar~lL~YR~~~L~~Ar~~A~~-~g~~GA 80 (370)
T PF03632_consen 2 FNLFHLLQSAPRHDSRLSIGAKGLSGEGYKGHVFWDTEIFMLPFFLLTHPEAARSLLNYRYRTLPQARENARE-YGYKGA 80 (370)
T ss_dssp HHHHHHHHH--SS-TT----TTTTS-STTTTSB-THHHHCHHHHHHHS-HHHHHHHHHHHHTTHHHHHHHHHC-TT--S-
T ss_pred cHHHHHHHhcCCCCCCCCcCCCCCCCCCcCCeeeecchHHhcchHhhcCHHHHHHHHHHHHHHHHHHHHHHHH-cCCCcc
Confidence 5667776554 321 37666 5 5556 899999999999999999999999999999999999999999 799999
Q ss_pred EEccccCCCCCCCCCCCCccc---ccCccCHHHHHHHHHHHHHhcCCHHHHHHhhHHHHHHHHHHHHHhcccCC-CCeEE
Q 012384 95 VIHHKTDIWAKSSADRGKVVW---ALWPMGGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIEGH-DGYLE 170 (465)
Q Consensus 95 ~~p~~~~~~g~~~~~~~~~~~---~~~~~~~aw~a~~~w~yy~~TgD~~fL~~~~~p~l~~~A~F~~~~l~~~~-~G~y~ 170 (465)
+|||+|...|..+. ..| ....+.+++||+++|+||+.|||.+||+++++|+|+|+|+||.+++++++ +|+|+
T Consensus 81 ~yPWeS~~~G~E~t----~~~~~~~~e~Hi~adIa~a~~~Y~~~TgD~~~l~~~g~eil~etArfw~sr~~~~~~~g~y~ 156 (370)
T PF03632_consen 81 MYPWESARTGEECT----GPWPAGDYEIHINADIAYAIWQYYQATGDEEFLREYGAEILFETARFWASRVEYNEDTGRYE 156 (370)
T ss_dssp ---SSBSS-SSB--------HHHHTT-THHHHHHHHHHHHHHHHH---TTTTTHHHHHHHHHHHHHHHH-EEETTTTEEE
T ss_pred eeecccccCccccC----CCCCchHhhhcchHHHHHHHHHHHHhCCcHHHHHccCHHHHHHHHHHHHHheEEcCCCCeEE
Confidence 99999987774321 112 12245689999999999999999999999999999999999999999887 59999
Q ss_pred ECCCCCC-CCCcCCCCCCccccccCchHHHHHHHHHHHHHHHHHHHhC-----CCcHHHHHHHHHHcCCCC-CCccCCCC
Q 012384 171 TNPSTSP-EHEFIAPDGKLACVSYSSTMDMAIIREVFSAIISAAEVLE-----KNEDALVEKVLKSLPRLR-PTKIAEDG 243 (465)
Q Consensus 171 i~ps~sP-E~~~~~~~G~~~~~~~n~t~d~~~v~~~l~~~~~~a~~Lg-----~~~~~~~~~w~~i~~~L~-p~~~~~~G 243 (465)
|..+++| |++. .++||+|||.++++.|+.++++++.++ ++ +++.++|++++++|. |++ ++.|
T Consensus 157 i~~V~GPDEY~~---------~V~NnayTN~ma~~~L~~A~~~~~~~~~~~l~~~-~~e~~~W~~ia~~i~lP~d-~~~g 225 (370)
T PF03632_consen 157 IRNVTGPDEYHE---------NVDNNAYTNAMAKWNLRLAAEAAERLGEEKLGLT-EEEPEKWKEIADKIYLPYD-EETG 225 (370)
T ss_dssp --SB--SSTTS----------SBS--HHHHHHHHHHHHHHHHHHTTS-HHHHT---HHHHHHHHHHHHTB---EE-TTTT
T ss_pred ecccCchhcccC---------CCCCcHHHHHHHHHHHHHHHHHHHHCchhhcCCC-HHHHHHHHHHHhcCCcCcC-CCCC
Confidence 9999999 9884 599999999999999999999986554 55 678899999999999 654 2333
Q ss_pred ce---------eecccCCCCCCCCcc-----c------------hhhhhccCCCCCCCCCCCHHHHHHHHHHHhhhCCCC
Q 012384 244 SI---------MEWAQDFKDPEVHHR-----H------------LSHLFGLFPGHTITIEKNPDLCKAAEKTLQKRGEEG 297 (465)
Q Consensus 244 ~l---------~ew~~~~~~~~~~hr-----h------------~s~L~~l~P~~~i~~~~~p~l~~aa~~tl~~r~~~~ 297 (465)
.+ .+|..+ +...+++ | .--++..||... .-+++..++..+.++.|+.|+
T Consensus 226 i~~q~dgy~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~qviKQADvvll~~~l~~---~~~~~~~~~n~~yYe~~T~hd 300 (370)
T PF03632_consen 226 IIPQFDGYFDLKEWDFS--EKPGDIRLLLHYHPDVIYRSQVIKQADVVLLMYLLPE---EFTEEQKRANLDYYEPRTTHD 300 (370)
T ss_dssp EE-SSTTGGGS----GG--GS-GGG-HHHCS-HHHHHHSS-BSS-SHHHHHHHTCC---CS-HHHHHHHHHHHGGGB---
T ss_pred CCcCCCCcccccCcChh--hcCcccchhhcCCcccccccceecHHHHHHHHHHCCC---CCCHHHHHHHHHHHcCccCCC
Confidence 22 222211 1011111 0 011334454331 146777777788888899888
Q ss_pred CChHHHHHHHHHHhcCChHHHHHHHHHHHhccCCcccccCCCCcccccccCCCCcccCc-cchhHHHHHHHHhhccCC
Q 012384 298 PGWSITWKTALWARLHDQEHAYRMVKRLFNLVDPEHEKHFEGGLYSNLFAAHPPFQIDA-NFGFTAAVAEMLVQSTLN 374 (465)
Q Consensus 298 ~gws~~~~a~~aArlgd~e~A~~~l~~~~~~~~~~~~~~~~~g~~~nl~~~h~pfqidg-~~g~~~av~emLlqs~~g 374 (465)
+++|.++++|++|++|+.++|+++|.+.+. +|+++.. +++ -+| ..+.++|++.++++...|
T Consensus 301 ssLS~~i~ai~aa~lg~~~~A~~~f~~s~~-~Dl~~~~---~~~------------~~G~h~a~~gG~wq~~v~Gf~G 362 (370)
T PF03632_consen 301 SSLSWSIHAIVAARLGDSEKAYDYFRKSAR-IDLDNEN---GNT------------AEGIHLAGMGGFWQAVVFGFGG 362 (370)
T ss_dssp STTCHHHHHHHHHHTT-HHHHHHHHCCCCT-TTTTTTT---S-G------------GG---GGGGGHHHHHHHTTTT-
T ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCcccC---CCC------------CcchHHHHHHHHHHHHHhccCc
Confidence 899999999999999999999999987776 4543221 111 233 456777888888877766
No 4
>KOG4125 consensus Acid trehalase [Carbohydrate transport and metabolism]
Probab=99.92 E-value=6.6e-24 Score=208.84 Aligned_cols=334 Identities=13% Similarity=0.133 Sum_probs=232.3
Q ss_pred ccchhhccc-h----hhHH-HHHHhhhhhhcccCC---------CCCCCCCC-----CCCc--cccccccchhccccCCC
Q 012384 5 PWWSFYSSL-V----DICL-FLLHDLELRLPTCRA---------YGTKILVQ-----HGTP--HVNINLEMNYWQSLPCN 62 (465)
Q Consensus 5 ~ww~~~~~~-~----d~~~-~~~~~~rYll~sssr---------~g~~p~~l-----~~dy--h~n~N~qm~ywp~~~~n 62 (465)
+|=+||..- . +..+ +....+.|.|.|+-- .|-.|-+| ..+| |.+|++++-+.|....=
T Consensus 233 aW~~lW~d~f~~~~~~L~L~Q~~r~slfYllS~LPqpk~~n~~~~GLSP~GLsnG~~E~~Y~GHvFWD~diWM~P~il~F 312 (682)
T KOG4125|consen 233 AWYDLWNDAFIEIPSDLLLEQTARSSLFYLLSNLPQPKDYNVSSDGLSPVGLSNGLSEDSYGGHVFWDADIWMEPALLPF 312 (682)
T ss_pred HHHHHHHhhhhccCcHHHHHHHHhhhhhhHhhcCCCcCCCCccccCcCcccccCCcchhhcCCceeecchhhhhhhhhhc
Confidence 333999865 1 2222 234556666666542 13456666 3445 89999999999999999
Q ss_pred CccccHHHHHHHHHHHHhHHHHHHHhcCCCceEEccccCCCCCCC-CC--CCCcccccCccCHHHHHHHHHHHHHhcCCH
Q 012384 63 LSECQEPLFDFLTYLSINGSKTAQVNYLASGWVIHHKTDIWAKSS-AD--RGKVVWALWPMGGAWLCTHLWEHYNYTMDR 139 (465)
Q Consensus 63 ~~e~~~~l~~~~~~~l~~~r~~A~~~yG~~G~~~p~~~~~~g~~~-~~--~~~~~~~~~~~~~aw~a~~~w~yy~~TgD~ 139 (465)
+||.++.+++||.|.|+.|+.+|.. +|++|+.|||++...|... +. ....+. +.+..++.++=-||.-|.|.
T Consensus 313 ~p~~A~~~L~YR~RtL~~Ak~nA~~-~GY~GA~FpWESA~~G~EV~~e~~~~~QE~----Hin~dv~~Af~~y~h~~~D~ 387 (682)
T KOG4125|consen 313 FPNVAQNMLNYRNRTLSQAKLNAEK-YGYPGAIFPWESAKYGNEVSTEGPCVDQEY----HINVDVAMAFSIYLHEGIDD 387 (682)
T ss_pred CHHHHHHHHHhhhhhHHHHHhhHHh-cCCCCccccccccccccccCCCCCceeEEE----EecHHHHHHHHHHHHhccch
Confidence 9999999999999999999999999 8999999999988777642 11 112223 34568899998999999999
Q ss_pred HHHHHhhHHHHHHHHHHHHHhcccCC-CCeEEECCCCCC-CCCcCCCCCCccccccCchHHHHHHHHHHHHHHHHHHHhC
Q 012384 140 DFLEKRAYPLLEGCASFLLDWLIEGH-DGYLETNPSTSP-EHEFIAPDGKLACVSYSSTMDMAIIREVFSAIISAAEVLE 217 (465)
Q Consensus 140 ~fL~~~~~p~l~~~A~F~~~~l~~~~-~G~y~i~ps~sP-E~~~~~~~G~~~~~~~n~t~d~~~v~~~l~~~~~~a~~Lg 217 (465)
+|++..+||+++.+|+||.++++.++ .++||+..+++| |+++ .++|+.|||+.++-+|+-|..+|+-||
T Consensus 388 e~~~~t~Wpi~~~VA~F~~SRv~~~~s~~~yHL~nVM~PDE~H~---------~VNn~VYTNa~~k~~L~FA~~LA~hlG 458 (682)
T KOG4125|consen 388 EYLRYTTWPIIKNVAQFFTSRVKYNSSLGLYHLYNVMDPDEFHN---------HVNNGVYTNAGIKTLLKFATDLANHLG 458 (682)
T ss_pred hhhccCCchhHHHHHHHhhheeEecCccceeeeeccCCchhccc---------ccccchhhhHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999887 899999999999 8885 489999999999999999999999999
Q ss_pred CCcHHHHHHHHHHcCCCC-CCccCCCCceeecccCCCCCCCCccchhhhhccCCCCCCCCCCCHHHHHHHHHHHhhhCC-
Q 012384 218 KNEDALVEKVLKSLPRLR-PTKIAEDGSIMEWAQDFKDPEVHHRHLSHLFGLFPGHTITIEKNPDLCKAAEKTLQKRGE- 295 (465)
Q Consensus 218 ~~~~~~~~~w~~i~~~L~-p~~~~~~G~l~ew~~~~~~~~~~hrh~s~L~~l~P~~~i~~~~~p~l~~aa~~tl~~r~~- 295 (465)
+. ..++|.+++++|. |..+..+- -.|..--....+. .+- --.+.+||.+-|+. .... -..+.+..|+.
T Consensus 459 ~~---~~~kW~eVsD~i~iprDvs~N~-HPey~g~V~~~~i-kqa-d~~l~~ypl~~~~~---~s~~-ndl~~y~~~~~~ 528 (682)
T KOG4125|consen 459 EV---VDPKWSEVSDDIYIPRDVSSNI-HPEYSGMVSSVEI-KQA-DVTLMVYPLGYIND---ESIL-NDLYYYSERQSA 528 (682)
T ss_pred Cc---cChhHHHhccCceecccccccc-Chhhccccchhhh-hhc-ceEEEecccccccc---hhhh-hhhhhhhhcccc
Confidence 75 5789999999999 76544221 1111100000011 111 12356799887753 2221 11222333332
Q ss_pred CCCChHHHHHHHHHHhcCChHHHHHHHHHHHhcc-CCcc--cccCCCCcccccccCCCCcccCccchhHHHHHHHH
Q 012384 296 EGPGWSITWKTALWARLHDQEHAYRMVKRLFNLV-DPEH--EKHFEGGLYSNLFAAHPPFQIDANFGFTAAVAEML 368 (465)
Q Consensus 296 ~~~gws~~~~a~~aArlgd~e~A~~~l~~~~~~~-~~~~--~~~~~~g~~~nl~~~h~pfqidg~~g~~~av~emL 368 (465)
.+.....++++..++|+-..-.|-++|.+..... .++= ....+.|. +.+.|-+.|+.|+++++.-.+
T Consensus 529 sgpamt~~~f~a~~~~~l~~~~~~~y~~~~~~~y~r~~f~~~se~~~g~------~~~a~flt~~ggflq~~~fg~ 598 (682)
T KOG4125|consen 529 SGPAMTYPVFVAAAAGLLNHGSSSSYLYKSVLPYLRAPFAQFSEQSNGL------TQPAFFLTANGGFLQSILFGL 598 (682)
T ss_pred cCCccccHHHHHHHHhhhcccchhHHHHhcchhhccchhhhhccCCCCC------CCcceeeecccHHHHHHHhcc
Confidence 3444444448888888877667777887766532 2211 01111222 122344889999999988776
No 5
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=99.01 E-value=5.5e-09 Score=113.92 Aligned_cols=277 Identities=16% Similarity=0.172 Sum_probs=169.5
Q ss_pred CCccccccccc--hhccccCCCCccccHHHHHHHHHHHHhHHHHHHHhcCCCceEEccccCCCCCCCCCCCCcccccCcc
Q 012384 43 GTPHVNINLEM--NYWQSLPCNLSECQEPLFDFLTYLSINGSKTAQVNYLASGWVIHHKTDIWAKSSADRGKVVWALWPM 120 (465)
Q Consensus 43 ~dyh~n~N~qm--~ywp~~~~n~~e~~~~l~~~~~~~l~~~r~~A~~~yG~~G~~~p~~~~~~g~~~~~~~~~~~~~~~~ 120 (465)
++|+.-|.=.. ....+..++++|.++.+++|+.+... .+|...+. ..+.|...| -.|....-
T Consensus 290 ~~Y~y~W~RD~~~~a~Al~~~G~~~~a~~~l~~l~~~q~-----------~~G~~~~~-~~~dG~~~~----~~~~~Q~D 353 (616)
T TIGR01577 290 GGYAYCWGRDASYIATALDRAGYHDRVDRFFRWAMQTQS-----------RDGSWQQR-YYLNGRLAP----LQWGLQID 353 (616)
T ss_pred CCCceeccccHHHHHHHHHHCCCHHHHHHHHHHHHHhhC-----------cCCCcceE-EecCCCCCC----CCCCcccc
Confidence 45664433222 23344578899999999999866532 24443322 112332211 01111111
Q ss_pred CHHHHHHHHHHHHHhcCCHHHHHHhhHHHHHHHHHHHHHhcccCCCCeEEECCCCCC-CCCcCCCCCCccccccCchHHH
Q 012384 121 GGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIEGHDGYLETNPSTSP-EHEFIAPDGKLACVSYSSTMDM 199 (465)
Q Consensus 121 ~~aw~a~~~w~yy~~TgD~~fL~~~~~p~l~~~A~F~~~~l~~~~~G~y~i~ps~sP-E~~~~~~~G~~~~~~~n~t~d~ 199 (465)
..+.+...+|+|++.|+|.+|++ +.+|+++.+++|..+... .+ + ..|+.+. |... |. .+++.
T Consensus 354 ~~g~~l~al~~y~~~t~d~~~~~-~~~~~v~~a~~fl~~~~~---~~-l-~~~~~~lWEer~----G~-------~~~t~ 416 (616)
T TIGR01577 354 ETGSILWAMDQHYRLTNDRAFLE-EIWESVQKAAQYLILFID---PE-T-PLPCRDLWEERE----GV-------FTYTA 416 (616)
T ss_pred chhHHHHHHHHHHHHHCCHHHHH-HHHHHHHHHHHHHHHhcc---CC-C-CCCCCccceecC----Cc-------cCccH
Confidence 24455668899999999999997 599999999999998642 12 1 2245554 4432 21 68899
Q ss_pred HHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCCC-Cc---cCCC-CceeecccCCCCCCCCccchhhhhcc-CCCCC
Q 012384 200 AIIREVFSAIISAAEVLEKNEDALVEKVLKSLPRLRP-TK---IAED-GSIMEWAQDFKDPEVHHRHLSHLFGL-FPGHT 273 (465)
Q Consensus 200 ~~v~~~l~~~~~~a~~Lg~~~~~~~~~w~~i~~~L~p-~~---~~~~-G~l~ew~~~~~~~~~~hrh~s~L~~l-~P~~~ 273 (465)
++++..|..++++++.+|.+ +..++|++.+++|.. +. .+++ |.+.....+ ...+....+.++.+ .|++.
T Consensus 417 a~~~aAL~~aa~lA~~lGd~--~~a~~~~~~Ad~ik~~i~~~~w~~~~g~F~~~~~~---~~~~~~vDaSlL~l~~~~g~ 491 (616)
T TIGR01577 417 SAVYGGLDAAAAVADKLGEK--RLAQNWKKAAEFIKRAVEERFWLPERQVFAKGIKL---MVLDKTIDISILGISVPFNL 491 (616)
T ss_pred HHHHHHHHHHHHHHHHcCCh--HHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeecC---CCCCCcccHHHHhHHHhcCC
Confidence 99999999999999999965 467788888888762 21 1222 333322111 01123344556666 57888
Q ss_pred CCCCCCHHHH---HHHHHHHhh-------h--CC---CCCCh--HHHHHHHHHHhcCChH-------------HHHHHHH
Q 012384 274 ITIEKNPDLC---KAAEKTLQK-------R--GE---EGPGW--SITWKTALWARLHDQE-------------HAYRMVK 323 (465)
Q Consensus 274 i~~~~~p~l~---~aa~~tl~~-------r--~~---~~~gw--s~~~~a~~aArlgd~e-------------~A~~~l~ 323 (465)
+.+ ++|.++ +++.+.|.. | ++ +++.| +..|++..++++|+.+ +|.++|.
T Consensus 492 l~~-~Dpr~v~Tv~~I~~~L~~~~~ggi~RY~~D~y~~g~~w~i~T~wla~~~~~~g~~~~~~~~~~~~~~~~~A~~ll~ 570 (616)
T TIGR01577 492 IAP-DDERMVKMAEAIEKHLTSPIVGGIKRYENDPYVGGNPWILTTLWLSQLYIKQGRILKALNHNGADIYLQKSKKLLK 570 (616)
T ss_pred CCC-CChHHHHHHHHHHHHhcccCCCeeeCCCCCCCCCCCcHHHHHHHHHHHHHHhcccccccccchhhhHHHHHHHHHH
Confidence 888 577654 555555532 1 11 24667 6789999999999775 8999999
Q ss_pred HHHhccCCcccccCCCCcccccccCCCCcccCccchhHHHHHHHHhhccCC
Q 012384 324 RLFNLVDPEHEKHFEGGLYSNLFAAHPPFQIDANFGFTAAVAEMLVQSTLN 374 (465)
Q Consensus 324 ~~~~~~~~~~~~~~~~g~~~nl~~~h~pfqidg~~g~~~av~emLlqs~~g 374 (465)
+++....+ .|++| .|+|...|.+.+.. .|.+||.+
T Consensus 571 ~~~~~~~~-------~Gll~--------Eqvd~~~g~~~g~~-Pl~wSHa~ 605 (616)
T TIGR01577 571 WVMDHRTD-------LGLLP--------EQVDKETGKPAWAV-PLGWSHAM 605 (616)
T ss_pred HHHhcCCC-------CCCCc--------cccCCCCCCCCCcC-CcccchHH
Confidence 98885322 45554 66665555554433 34444443
No 6
>COG3387 SGA1 Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=98.80 E-value=1.4e-08 Score=109.57 Aligned_cols=334 Identities=17% Similarity=0.160 Sum_probs=209.3
Q ss_pred CccccchhhccchhhHH----HHHHhhhhhhcccC-C-CCCCCCCC--------CCC--ccccccccchh--ccccCCCC
Q 012384 2 KIHPWWSFYSSLVDICL----FLLHDLELRLPTCR-A-YGTKILVQ--------HGT--PHVNINLEMNY--WQSLPCNL 63 (465)
Q Consensus 2 ~~~~ww~~~~~~~d~~~----~~~~~~rYll~sss-r-~g~~p~~l--------~~d--yh~n~N~qm~y--wp~~~~n~ 63 (465)
++..+|.-|.+.....- -+++-+.+.|.+.. . .|.+-++. ++. |+.-|.=...+ +.....++
T Consensus 223 ~~~~~Wr~w~~~~~~~~~~~~~~~~rS~l~l~~~~~~~~G~ivAs~t~~l~~~~~g~~dY~y~W~RD~~~~~~AL~~~G~ 302 (612)
T COG3387 223 RTTDYWRSWLSKLNPLGRAYASALYRSALVLKALNYNPTGAIVASPTTSLPELIGGTRDYRYVWPRDASYAALALLAIGY 302 (612)
T ss_pred HHHHHHHHHHhhcCCcchhhHHHHHHHHHHHHHcccCCCCcEEEcCCCCccccCCCCCCceEEccCcHHHHHHHHHHcCC
Confidence 34567777776632222 12333333332222 2 24433332 555 88766666654 34457999
Q ss_pred ccccHHHHHHHHHHH-HhHHHHHHHhcCCCceEEccccCCCCCCCCCCCCcccccCccCHHHHHHHHHHHHHhcCCHHHH
Q 012384 64 SECQEPLFDFLTYLS-INGSKTAQVNYLASGWVIHHKTDIWAKSSADRGKVVWALWPMGGAWLCTHLWEHYNYTMDRDFL 142 (465)
Q Consensus 64 ~e~~~~l~~~~~~~l-~~~r~~A~~~yG~~G~~~p~~~~~~g~~~~~~~~~~~~~~~~~~aw~a~~~w~yy~~TgD~~fL 142 (465)
.+.++.+|.|+.+.. +.+. -...|+.+|.-. ...|.. -. +.......+...+++...+++.|++..+|..+.
T Consensus 303 ~~~a~~~f~~l~~~~~~~~~--~~~~y~~~g~~~---~~~w~~-~~-~~~~~~pv~~~~~a~~~~~ld~~~~~~~~~~~~ 375 (612)
T COG3387 303 KKEALRFFEFLPDVQTPNGK--LYHKYSIDGSDL---AESWLP-VS-GYYNSFPVRIGNTALVQGALDVYGSIMNDIYFY 375 (612)
T ss_pred HHHHHHHHHHHHHhhCCCCc--eeeEEecCCCcc---cccccc-cc-CCCCCCceEEcchhhHHHHHHHHHHHHHHHHHH
Confidence 999999999998765 3343 122255565410 111211 00 001112233446789999999999999999999
Q ss_pred HHhhHHHHHHHHHHHHHhcccCCCCeEEECCCCCC-CCCcCCCCCCccccccCchHHHHHHHHHHHHHHHHHHHhCCCcH
Q 012384 143 EKRAYPLLEGCASFLLDWLIEGHDGYLETNPSTSP-EHEFIAPDGKLACVSYSSTMDMAIIREVFSAIISAAEVLEKNED 221 (465)
Q Consensus 143 ~~~~~p~l~~~A~F~~~~l~~~~~G~y~i~ps~sP-E~~~~~~~G~~~~~~~n~t~d~~~v~~~l~~~~~~a~~Lg~~~~ 221 (465)
..+...+++..++|... +.+...+ -..|+.+- |.+. | ..+|+.++++..|..+.++|+..| + .
T Consensus 376 ~~~~~~~~~~~~~~~~~-~~~~~~~--~~~p~~~~WEer~----g-------~~~yt~~~~~agLd~A~~lA~~~g-d-~ 439 (612)
T COG3387 376 AKYYAIYILPAADYLRR-MEKIKAN--LPTPDFDLWEERG----G-------HFTYTKATVYAGLDAAADLAEEFG-D-K 439 (612)
T ss_pred HhhcchhhHHHHHHHHH-HHhhhcC--CCCCccceecccC----C-------cccchHHHHHHHHHHHHHHHHHhC-C-c
Confidence 87778899999999988 5443223 24566676 6663 1 589999999999999999999999 4 5
Q ss_pred HHHHHHHHHcCCCCC-Cc----cCCCCceeecccCCCCCCCCccchhhhhccCCCCCCCCCCCHHH---HHHHHHHHhhh
Q 012384 222 ALVEKVLKSLPRLRP-TK----IAEDGSIMEWAQDFKDPEVHHRHLSHLFGLFPGHTITIEKNPDL---CKAAEKTLQKR 293 (465)
Q Consensus 222 ~~~~~w~~i~~~L~p-~~----~~~~G~l~ew~~~~~~~~~~hrh~s~L~~l~P~~~i~~~~~p~l---~~aa~~tl~~r 293 (465)
+..++|++.+++|.- +. ..+.|.+..-. +..++..+.+.+.++.-++.|.+ +||.. ++++.+.|..-
T Consensus 440 ~~a~~~~~~ad~ik~~v~~~~~~~~~~~f~r~~----~~~~~~~vDasll~l~~fg~i~~-~D~~~~~t~~~I~~~L~~~ 514 (612)
T COG3387 440 GSAEHWRKTADELKEAVLRRGYAEDGGYFVRSL----GRKPDDTVDASLLGLVLFGFIPP-DDPRILATVEAIERELLVD 514 (612)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCCeeehhc----CCCccccccHHHhhccccCccCC-CCHHHHHHHHHHHHHHhhc
Confidence 678899999988873 21 12223222111 11234556667777766888888 78854 44454554321
Q ss_pred -------C---C----C-CCCh--HHHHHHHHHHhcCChHHHHHHHHHHHhccCCcccccCCCCcccccccCCCCcccCc
Q 012384 294 -------G---E----E-GPGW--SITWKTALWARLHDQEHAYRMVKRLFNLVDPEHEKHFEGGLYSNLFAAHPPFQIDA 356 (465)
Q Consensus 294 -------~---~----~-~~gw--s~~~~a~~aArlgd~e~A~~~l~~~~~~~~~~~~~~~~~g~~~nl~~~h~pfqidg 356 (465)
. . . +..| ...|++....++|+.++|.+++.+++.... ..|.++ .|++-
T Consensus 515 ~~gi~RY~~~~~d~~~~~~~~w~i~t~Wl~~~~~~~g~~~~a~~ll~~l~~~a~-------~~gll~--------EQv~~ 579 (612)
T COG3387 515 GGGIRRYNNEYDDGLGGDNGPWIITTLWLSEYYLALGRLDEAKKLLEWLLAFAS-------PLGLLP--------EQVDD 579 (612)
T ss_pred CCcEEcCccccccccCCCCCcceeehhHHHHHHHHccchHHHHHHHHHHHHhcC-------CCCCcc--------hhhcC
Confidence 1 1 1 2245 578999999999999999999999887432 256654 67776
Q ss_pred cchhHHHHHHHHhhccCCeEEeC
Q 012384 357 NFGFTAAVAEMLVQSTLNDLYLL 379 (465)
Q Consensus 357 ~~g~~~av~emLlqs~~g~i~l~ 379 (465)
..|-+.+.. .|.+||.+.|...
T Consensus 580 ~~G~~~g~~-PlawSha~~I~ai 601 (612)
T COG3387 580 GSGEPLGAF-PLAWSHAEFIIAI 601 (612)
T ss_pred CCCccCCCC-cchhhhHHHHHHH
Confidence 666665444 4667776655443
No 7
>PF05592 Bac_rhamnosid: Bacterial alpha-L-rhamnosidase; InterPro: IPR008902 This entry consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria [].; PDB: 2OKX_B 3CIH_A.
Probab=98.26 E-value=6.3e-06 Score=88.13 Aligned_cols=269 Identities=18% Similarity=0.185 Sum_probs=134.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHhhHHHHHHHHHHHHHhcccC--CCCeEEECCCCC-CCCCcCCCCCCccccccCchHHH
Q 012384 123 AWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIEG--HDGYLETNPSTS-PEHEFIAPDGKLACVSYSSTMDM 199 (465)
Q Consensus 123 aw~a~~~w~yy~~TgD~~fL~~~~~p~l~~~A~F~~~~l~~~--~~G~y~i~ps~s-PE~~~~~~~G~~~~~~~n~t~d~ 199 (465)
.+....+|+||++|||++||+ +.||.|+...+|+..+.... ......+. ... |+... .......+..+
T Consensus 207 l~~i~~~~~~y~~tGD~~~l~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-DW~~~~~~~-------~~~~~~~~~~~ 277 (509)
T PF05592_consen 207 LAWIIIPWDYYLYTGDREFLE-EYYPAMKRYLDYLERRVDDGLDGLPGWGFG-DWLAPGNDG-------DGPTPGATITN 277 (509)
T ss_dssp HHHHHHHHHHHHHHT-HHHHH-HHHHHHHHHHHHHHTTB-TSSB-CCSB--S--SS----TT----------SCCEEHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHH-HHHHHHHHHHHHHHHhCCccccCCCCCcee-ecCCccCcc-------cccchHHHHHH
Confidence 455678999999999999997 69999999999999986541 00111111 222 22111 01245577799
Q ss_pred HHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCC-CCc---c-CCCCceeecccCCCCCCCCccchhhhhccCCCCCC
Q 012384 200 AIIREVFSAIISAAEVLEKNEDALVEKVLKSLPRLR-PTK---I-AEDGSIMEWAQDFKDPEVHHRHLSHLFGLFPGHTI 274 (465)
Q Consensus 200 ~~v~~~l~~~~~~a~~Lg~~~~~~~~~w~~i~~~L~-p~~---~-~~~G~l~ew~~~~~~~~~~hrh~s~L~~l~P~~~i 274 (465)
++....|+.+.++|+.||.+ +..++|++.+++|. .+. . .+.|.. ....+.+..++|+ .+.+
T Consensus 278 ~~~~~~l~~~a~lA~~lg~~--~~a~~y~~~a~~lk~a~~~~~~d~~~g~~-----------~~~sq~~~alAl~-~gl~ 343 (509)
T PF05592_consen 278 ALYYYALRAAAELAEALGKD--EDAAEYRARAERLKAAINRHFWDPEKGGY-----------ADGSQHANALALL-FGLV 343 (509)
T ss_dssp HHHHHHHHHHHHHHHHCT-H--HHHHHHHHHHHHHHHHHHHHCEETTTTEE-----------CTTSHCHHHHCHH-CCHC
T ss_pred HHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHHHHhccCcccCcc-----------cCCchHHHHHHHH-hchh
Confidence 99999999999999999975 45788988888887 221 1 122311 0111222223333 1211
Q ss_pred CCCCCHHHHHHHHHHHhhh----CCC-CCC-hHHHHHHHHHHhcCChHHHHHHHHHHHhc-----cCCcccccCCCCccc
Q 012384 275 TIEKNPDLCKAAEKTLQKR----GEE-GPG-WSITWKTALWARLHDQEHAYRMVKRLFNL-----VDPEHEKHFEGGLYS 343 (465)
Q Consensus 275 ~~~~~p~l~~aa~~tl~~r----~~~-~~g-ws~~~~a~~aArlgd~e~A~~~l~~~~~~-----~~~~~~~~~~~g~~~ 343 (465)
+ .++..+.+.+.|..+ +.+ ..| .+..+..-..++.|..+.|++++.+.... ++. ...++.
T Consensus 344 -p--~~~~~~~~~~~l~~~~~~~~~~~~~g~~g~~~~~~~L~~~g~~~~a~~~~~~~~~~~w~~ml~~------g~tT~w 414 (509)
T PF05592_consen 344 -P--EEERAAAALKRLAKRIAANGYHLSTGFIGSPYLLEALFRAGRADGAYDLLTQRDYPSWGYMLDQ------GATTLW 414 (509)
T ss_dssp ----HHHHTCHCHCHCHHCCHCCCHS--TCCC-CHHHHHHHHHCCHHCCHHHHHHHHHHHHCHHHHCT------T-SS--
T ss_pred -h--hhhhHHHHHHHHHHHHHhcCCCcCcccccHHHHHHHHHHcCCHHHHHHHHHhccccchhHHHhC------CCCEEE
Confidence 1 111112233333322 111 111 12222333557889999999998764321 111 011112
Q ss_pred ccccC--CCCcccCccchhHHHHHHHHhhccC---------CeEEeCCCCCccccCceeecceeeecc-eEEEEEEeCCe
Q 012384 344 NLFAA--HPPFQIDANFGFTAAVAEMLVQSTL---------NDLYLLPALPWDKWSSGCVKGLKARGG-ETVSICWKDGD 411 (465)
Q Consensus 344 nl~~~--h~pfqidg~~g~~~av~emLlqs~~---------g~i~l~PalP~~~W~~gs~~gL~arG~-~~V~~~~~~g~ 411 (465)
-.|+. ..+...--+|+..+++..-|.+.-. ..+.|.|.+| ...+..+-+ +...-| +.|+-+.++|+
T Consensus 415 E~w~~~~~~~~~~S~~H~w~~~p~~~l~~~v~GI~p~~pG~~~~~i~P~~~-~~L~~~~~~-~~T~~G~I~v~w~~~~g~ 492 (509)
T PF05592_consen 415 EYWDGDGGDPPNRSLCHAWSAGPTYWLYRYVLGIRPTEPGFKEFRIAPQPP-GDLTWAEGT-VPTPYGEISVSWKREDGK 492 (509)
T ss_dssp SS-STT-TCTT-S-SSBGGG-THHHHHHHCTS-EEESSGGGSEEEE------TT-SEEEEE-EEETTCEEEEEEEEETTE
T ss_pred EecCccCCCCCCCCCCCCcchhHHHHHHHHhhceEeCCCCCcEEEEEEecC-CCCcEEEEE-EECCCceEEEEEEEeCCE
Confidence 12221 1222234478888888876654322 3788899987 555444332 334334 44444445676
Q ss_pred EEEEEEEeCCCCCcc
Q 012384 412 LHEVGIYSNYSNNDH 426 (465)
Q Consensus 412 ~~~~~i~s~~~~~~~ 426 (465)
.+++|+.-.+.+.+
T Consensus 493 -~~l~v~vP~~t~a~ 506 (509)
T PF05592_consen 493 -LTLEVTVPAGTTAE 506 (509)
T ss_dssp -EEEEEEEETTSEEE
T ss_pred -EEEEEEeCCCCEEE
Confidence 36666655554444
No 8
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.
Probab=97.95 E-value=0.00017 Score=78.56 Aligned_cols=258 Identities=16% Similarity=0.120 Sum_probs=147.5
Q ss_pred ccCCCCccccHHHHHHHHHHHH-hHHHHHHHhcCCCceEEccccCCCCCCCCCCCCcccccCcc-CHHHHHHHHHHHHHh
Q 012384 58 SLPCNLSECQEPLFDFLTYLSI-NGSKTAQVNYLASGWVIHHKTDIWAKSSADRGKVVWALWPM-GGAWLCTHLWEHYNY 135 (465)
Q Consensus 58 ~~~~n~~e~~~~l~~~~~~~l~-~~r~~A~~~yG~~G~~~p~~~~~~g~~~~~~~~~~~~~~~~-~~aw~a~~~w~yy~~ 135 (465)
+...++.|.++.+|+|+.+... .+.. -+. |+.+|-. .|.--+. ..+.+...+|.+++.
T Consensus 307 L~~~G~~~~a~~~~~~l~~~~~~~G~~-lq~-y~vdG~~------------------~~~~iQlD~~g~~i~~~~~l~~~ 366 (648)
T TIGR01535 307 FLAAGDVDSALRSLDYLAKVQQDNGMF-PQN-SWVDGKP------------------YWTGIQLDETAFPILLAYRLHRY 366 (648)
T ss_pred HHHCCCHHHHHHHHHHHHHHhccCCCc-Cce-eccCCCC------------------CCCCccccHHHHHHHHHHHHHHc
Confidence 3579999999999999987753 2211 111 3333322 1211111 134444555666664
Q ss_pred cCCHHHHHHhhHHHHHHHHHHHHHhcccCCCCeEEECCCCCC-CCCcCCCCCCccccccCchHHHHHHHHHHHHHHHHHH
Q 012384 136 TMDRDFLEKRAYPLLEGCASFLLDWLIEGHDGYLETNPSTSP-EHEFIAPDGKLACVSYSSTMDMAIIREVFSAIISAAE 214 (465)
Q Consensus 136 TgD~~fL~~~~~p~l~~~A~F~~~~l~~~~~G~y~i~ps~sP-E~~~~~~~G~~~~~~~n~t~d~~~v~~~l~~~~~~a~ 214 (465)
+. ...+++++.+|+|....- ..|+.+. |... | -..||.+.|...|..+.++++
T Consensus 367 --~~----~~~~~~vk~aadfl~~~~---------p~p~~d~WEer~----g-------~~~~T~a~v~aaL~~Aa~iA~ 420 (648)
T TIGR01535 367 --DH----AFYDKMLKPAADFIVKNG---------PKTGQERWEEIG----G-------YSPSTLAAEIAGLTAAADIAE 420 (648)
T ss_pred --Cc----HHHHHHHHHHHHHHHHcC---------CCCCCCcccccC----C-------cCchhHHHHHHHHHHHHHHHH
Confidence 22 236899999999988852 3344444 5542 2 256899999999999999999
Q ss_pred HhCCCcHHHHHHHHHHcCCCCC-C---ccCC------CCceeecccCCCCC--------------CCCccchhhhhccCC
Q 012384 215 VLEKNEDALVEKVLKSLPRLRP-T---KIAE------DGSIMEWAQDFKDP--------------EVHHRHLSHLFGLFP 270 (465)
Q Consensus 215 ~Lg~~~~~~~~~w~~i~~~L~p-~---~~~~------~G~l~ew~~~~~~~--------------~~~hrh~s~L~~l~P 270 (465)
.+|.+ +..++|++.++++.. + -.+. .|.+..-..+..+. ..+..-.+.++.+..
T Consensus 421 ~~g~~--~~a~~w~~~Ad~i~~~i~~~~~~~~g~~~~~~~f~r~~~~~~~~~~~~~~~~n~~~~~~~~~~vDaSlL~L~~ 498 (648)
T TIGR01535 421 QNGDA--GSAQKYRETADNWQKLIENWTFTTNGPLGDGQYYLRIAGLGDPNADFLINIANGGGVYPEKEVLDPGFLELVR 498 (648)
T ss_pred HcCCc--HHHHHHHHHHHHHHHHHHHhCcCCCcccCCCCeEEEeecCCCCccccccccccccccCCCCCccCHHHHHHHH
Confidence 99976 367888887777642 1 1122 22222111000000 112233455666666
Q ss_pred CCCCCCCCCHHH---HHHHHHHHhh---------h--CC--C-------------CCCh--HHHHHHHHHHhcCChHHHH
Q 012384 271 GHTITIEKNPDL---CKAAEKTLQK---------R--GE--E-------------GPGW--SITWKTALWARLHDQEHAY 319 (465)
Q Consensus 271 ~~~i~~~~~p~l---~~aa~~tl~~---------r--~~--~-------------~~gw--s~~~~a~~aArlgd~e~A~ 319 (465)
++.+.+ +||.+ ++++.+.|.. | ++ + ++.| ...|++......|+ +|.
T Consensus 499 ~G~~~~-dDPri~~Tl~aIe~~L~~~~~~~g~~~RY~~Dgyg~~~~~~~~~~~~~G~~Wpi~T~~~~~y~l~~~~--~a~ 575 (648)
T TIGR01535 499 LGVKSP-DDPHILATLKEIDSTIKVDTPKGPSWYRYTHDGYGEPAKTEAYDGTGKGRLWPLLTGERGHYELAAGK--DAT 575 (648)
T ss_pred cCCcCC-CCHHHHHHHHHHHHHhccCCCCCCeEEecCCCCCCCcCCCCCccCCcCCceeehhhhHHHHHHHHcCC--hHH
Confidence 788877 68876 3455555531 2 11 0 2346 46777776665555 577
Q ss_pred HHHHHHHhccCCcccccCCCCcccccccCCCCcccCcc---------chhHHHHHHHHhhccCCeEEeCCC
Q 012384 320 RMVKRLFNLVDPEHEKHFEGGLYSNLFAAHPPFQIDAN---------FGFTAAVAEMLVQSTLNDLYLLPA 381 (465)
Q Consensus 320 ~~l~~~~~~~~~~~~~~~~~g~~~nl~~~h~pfqidg~---------~g~~~av~emLlqs~~g~i~l~Pa 381 (465)
.+++++..... .+|..| .|+.-. .|-+.+-+-.|++||...|.|+-.
T Consensus 576 ~~l~~~~~~a~-------~~g~lp--------EQV~d~~~~~~~~~~~G~pt~Sa~PL~WsHA~yi~l~~s 631 (648)
T TIGR01535 576 PYLKAMEKFAN-------EGGMIP--------EQVWDQTDLPSRGLFYGLPTDSASPLNWAHAEYVKLLRS 631 (648)
T ss_pred HHHHHHHHhcC-------cCCCcC--------cccCCCCCCcccccccCCcCCccccchhhHHHHHHHHHH
Confidence 89988877432 245554 555322 255543333677777766665443
No 9
>PF06202 GDE_C: Amylo-alpha-1,6-glucosidase ; InterPro: IPR010401 This family includes human glycogen branching enzyme P35573 from SWISSPROT. This enzyme contains a number of distinct catalytic activities. It has been shown for the yeast homologue O93808 from SWISSPROT that mutations in this region disrupt the enzymes Amylo-alpha-1,6-glucosidase (3.2.1.33 from EC).; GO: 0004135 amylo-alpha-1,6-glucosidase activity, 0005978 glycogen biosynthetic process
Probab=97.57 E-value=0.0051 Score=63.10 Aligned_cols=240 Identities=21% Similarity=0.249 Sum_probs=122.9
Q ss_pred CHHHHHHHHHHHHHhcCCHHHHHHhhHHHHHHHHHHHHHhcc----cC-CCCeEEECCCCCCCCCcCCC--CCCcccccc
Q 012384 121 GGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLI----EG-HDGYLETNPSTSPEHEFIAP--DGKLACVSY 193 (465)
Q Consensus 121 ~~aw~a~~~w~yy~~TgD~~fL~~~~~p~l~~~A~F~~~~l~----~~-~~G~y~i~ps~sPE~~~~~~--~G~~~~~~~ 193 (465)
.+.|....+.+|+++|+|.+||+ +.+|.|+++.+.+.+-.. .| ++| +...+.-..=.++.+. +|.....-.
T Consensus 85 at~wfl~~l~~Y~~~t~D~~~l~-~~~~~i~~il~~~~~g~~~~~~~d~~~g-l~~~~~~~~~~tWmD~~~~g~~~tpr~ 162 (370)
T PF06202_consen 85 ATLWFLIALQEYYRWTGDYSFLR-ELYPAIEEILEWYADGTDFGIRVDPEDG-LIYSGNGLNNQTWMDARNDGRPVTPRD 162 (370)
T ss_pred cHHHHHHHHHHHHHHhCCHHHHH-HHHHHHHHHHHHHHhCCCCccccccCCC-eeecCCCCCCCCccccccCCccccCCC
Confidence 35688999999999999999996 699999999999876433 23 245 3222211111122111 111000001
Q ss_pred C-chHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCC-CC----ccCCCCceeecccCCCCCCCCccchhhhhc
Q 012384 194 S-STMDMAIIREVFSAIISAAEVLEKNEDALVEKVLKSLPRLR-PT----KIAEDGSIMEWAQDFKDPEVHHRHLSHLFG 267 (465)
Q Consensus 194 n-~t~d~~~v~~~l~~~~~~a~~Lg~~~~~~~~~w~~i~~~L~-p~----~~~~~G~l~ew~~~~~~~~~~hrh~s~L~~ 267 (465)
+ +.--|+++...|..+.++++..+.+ ...+|++.+++|. -+ -..+.|.+..........+..-|.. ++.+
T Consensus 163 g~~vEIqal~y~AL~~~~~la~~~~~~---~a~~~~~~A~~lk~~F~~~FW~~~~g~~~d~ld~~~~~d~~irpN-~~~a 238 (370)
T PF06202_consen 163 GAAVEIQALWYNALRFAAELAEKFGDE---LAARYREWAERLKESFEKRFWDEDRGYYADALDGDKEPDDSIRPN-QLIA 238 (370)
T ss_pred CcchHHHHHHHHHHHHHHHHHhhcCCc---hHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEecCCCCCCcccccC-chhH
Confidence 1 2345778888888888888866543 4567887777776 32 2233444443322211112222322 2222
Q ss_pred -cCCCCCCCCCCCHHHHHHHH---------HHHhhh-----C-------------CCCCCh--HHHHHHHHHHhcCC-hH
Q 012384 268 -LFPGHTITIEKNPDLCKAAE---------KTLQKR-----G-------------EEGPGW--SITWKTALWARLHD-QE 316 (465)
Q Consensus 268 -l~P~~~i~~~~~p~l~~aa~---------~tl~~r-----~-------------~~~~gw--s~~~~a~~aArlgd-~e 316 (465)
..|...++.+....+++.+. +||... + +.++-| -.+..+...+|.|. .+
T Consensus 239 ~~L~~~~l~~~~a~~vl~~~~~~L~tp~GlRTLs~~~~~Y~p~y~g~~~~rd~sYHnGsvWpw~~g~~~~al~r~g~~~~ 318 (370)
T PF06202_consen 239 LSLPPGLLDPEQAKKVLDRVEEELLTPWGLRTLSPSDPRYNPIYEGDQDSRDMSYHNGSVWPWDNGIYAEALLRYGFDEE 318 (370)
T ss_pred HhcCCccCCHHHHHHHHHHHHHHcCCCCchhcccCCCCCcCCCCCCccccCcccccCCCcCcCcHHHHHHHHHHhCccch
Confidence 23445554321122233332 222211 1 013444 44555556678887 46
Q ss_pred HHHHHHHHHHhccCCcccccCCCCcccccccCCCCcccCccchhHHHHHHH
Q 012384 317 HAYRMVKRLFNLVDPEHEKHFEGGLYSNLFAAHPPFQIDANFGFTAAVAEM 367 (465)
Q Consensus 317 ~A~~~l~~~~~~~~~~~~~~~~~g~~~nl~~~h~pfqidg~~g~~~av~em 367 (465)
++.+.+..++..+.. ......-|..|-+++..+|+...|...=+-++.++
T Consensus 319 ~~~~~~~~ll~~~~~-~~~~~~~~~lpEl~dg~~~~~p~gc~~QAWS~a~i 368 (370)
T PF06202_consen 319 EAIREAKSLLEGFEE-HLQEFGLGRLPELFDGDPPHYPRGCSPQAWSVAEI 368 (370)
T ss_pred HHHHHHHHHHHHHHH-HHhhccCCCcchhcCCCCCCCCCCCHHHHHHHHHh
Confidence 677666666552210 00011245567777766665555544434455544
No 10
>PF04685 DUF608: Protein of unknown function, DUF608; InterPro: IPR006775 This domain is found in non-lysosomal glucosylceramidases that catalyze the conversion of glucosylceramide to free glucose and ceramide []. It is involved in sphingomyelin generation and prevention of glycolipid accumulation and may also catalyze the hydrolysis of bile acid 3-O-glucosides, however, the relevance of such activity is unclear in vivo []. ; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0016021 integral to membrane; PDB: 1V7V_A 1V7W_A 1V7X_A.
Probab=97.47 E-value=0.00012 Score=74.82 Aligned_cols=168 Identities=18% Similarity=0.244 Sum_probs=54.8
Q ss_pred hccccCCCCccccHHHHHHHHHHHHhHHHHHHHhcCC---------CceEEcccc----CCCCCCCCCCCCcccccCccC
Q 012384 55 YWQSLPCNLSECQEPLFDFLTYLSINGSKTAQVNYLA---------SGWVIHHKT----DIWAKSSADRGKVVWALWPMG 121 (465)
Q Consensus 55 ywp~~~~n~~e~~~~l~~~~~~~l~~~r~~A~~~yG~---------~G~~~p~~~----~~~g~~~~~~~~~~~~~~~~~ 121 (465)
+-+++....|++.+++..-..+....--..-+. ++. +|.+-|--. +||+.+.... -.....|.-.
T Consensus 23 ~s~al~~lfP~Le~s~~~~~~~~~~~~~~~~~~-~~~~~~~~~~k~~G~vphdlg~p~~~P~~~~n~y~-~~~~~~~~D~ 100 (365)
T PF04685_consen 23 ASFALLKLFPELERSMQRDFADAILSEDNTERK-ILYDGKIAPRKVRGAVPHDLGSPFDDPWDRTNAYN-YHDVYAWKDL 100 (365)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence 556677888999988885443333221111111 222 344432211 2343321000 0011123334
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHhhHHHHHHHHHHHHHhcccCCCCeEEECCCCCCCCCcCCCCCCccccccCchHHHHH
Q 012384 122 GAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIEGHDGYLETNPSTSPEHEFIAPDGKLACVSYSSTMDMAI 201 (465)
Q Consensus 122 ~aw~a~~~w~yy~~TgD~~fL~~~~~p~l~~~A~F~~~~l~~~~~G~y~i~ps~sPE~~~~~~~G~~~~~~~n~t~d~~~ 201 (465)
+.+....++++|+.|||.+||+ +.||.++++.+|...+ ..|.||- +.....|.+++- .-. ..--++|+..+
T Consensus 101 ~~~fVL~vyr~~~~TGD~~fL~-~~wp~v~~a~~~~~~~-D~d~dGl--~e~~g~~D~TyD---~~~--~~G~say~~~L 171 (365)
T PF04685_consen 101 NPKFVLQVYRDYKWTGDRDFLK-EMWPAVKKAMDYLLSW-DRDGDGL--PENPGHPDQTYD---DWS--MYGPSAYCGGL 171 (365)
T ss_dssp -----------------------EHHHHHHHHHHHHHHS-B--TTS---BEEET---SSST---T-E--EEEEEHHHHHH
T ss_pred cccccccccccccccccchhhh-hHHHHHHHHHHHHHhh-CCCCCCC--CCCCCCCccccc---cCC--eeCCCHHHHHH
Confidence 5677889999999999999997 6999999999999984 3444773 333334455541 111 22347999999
Q ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCC
Q 012384 202 IREVFSAIISAAEVLEKNEDALVEKVLKSLPRLR 235 (465)
Q Consensus 202 v~~~l~~~~~~a~~Lg~~~~~~~~~w~~i~~~L~ 235 (465)
.-..|+.++++|+.||.. +..+++++.+++..
T Consensus 172 ~laAL~A~~emA~~lgd~--~~a~~y~~~~~~~~ 203 (365)
T PF04685_consen 172 WLAALRAAAEMAKILGDP--ELAAKYRELAEKAK 203 (365)
T ss_dssp HHHHHHHHHHHHHHHT-H--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHH
Confidence 999999999999999963 56777888777766
No 11
>COG3408 GDB1 Glycogen debranching enzyme [Carbohydrate transport and metabolism]
Probab=97.37 E-value=0.0074 Score=65.93 Aligned_cols=300 Identities=17% Similarity=0.183 Sum_probs=152.9
Q ss_pred CCCCccccHHHHHHHHHHHHhHHHHHHHhcCCCceEEccccCCCCCCCCCCCCcccccCccCHHHHHHHHHHHHHhcCCH
Q 012384 60 PCNLSECQEPLFDFLTYLSINGSKTAQVNYLASGWVIHHKTDIWAKSSADRGKVVWALWPMGGAWLCTHLWEHYNYTMDR 139 (465)
Q Consensus 60 ~~n~~e~~~~l~~~~~~~l~~~r~~A~~~yG~~G~~~p~~~~~~g~~~~~~~~~~~~~~~~~~aw~a~~~w~yy~~TgD~ 139 (465)
..+++|+|+..+..+.+.. .+|-+ ||+. ....+ +.+.|. ..-...|.++.+.+|+.+|+|.
T Consensus 298 ~~g~~elArg~L~~~a~~~------------~~GkI-Phe~---~~~~~--~~~~Y~-tvD~t~~~i~~~~~y~~~t~d~ 358 (641)
T COG3408 298 LVGRFELARGTLNTLARYS------------EPGKI-PHEI---LLSIP--GEPYYN-TVDATPLFIYLLGAYLKYTGDT 358 (641)
T ss_pred hcCCHHHHHHHHHHHHhhc------------cCCCC-cchh---hhcCC--Ccceec-cCCCcHHHHHHHHHHHHHhccH
Confidence 3478899988888775552 23433 3221 00000 112221 0112458899999999999999
Q ss_pred HHHHHhhHHHHHHHHHHHHHhcccC--CCCeEEECCCCCCCCCcCCCCCCcc-ccc-cCchHHHHHH-HHHHHHHHHHHH
Q 012384 140 DFLEKRAYPLLEGCASFLLDWLIEG--HDGYLETNPSTSPEHEFIAPDGKLA-CVS-YSSTMDMAII-REVFSAIISAAE 214 (465)
Q Consensus 140 ~fL~~~~~p~l~~~A~F~~~~l~~~--~~G~y~i~ps~sPE~~~~~~~G~~~-~~~-~n~t~d~~~v-~~~l~~~~~~a~ 214 (465)
+|++ +.+|.+..+.+.+......+ .+|...+.. -++ .++.+...... ... .+..-++..+ ..++..+..++.
T Consensus 359 ~~i~-e~~~~v~~a~d~~~~~~~~~~~~~~~~l~~~-~~~-~tW~Ds~~~~~~~~~~~g~pi~i~al~~~~~~a~~~~a~ 435 (641)
T COG3408 359 EFIR-ELWPSVGAALDWILKGFDFGFDTYGDGLLEG-GSN-QTWMDSGDDIFAVTPRAGKPVAINALQYYALKAALRLAN 435 (641)
T ss_pred HHHH-HHHHHHHHHHHHHHhcCCccceecCcccccC-CCC-CCCeecCCccccccCCCCCceeHHHHHHHHHHHHHHHHH
Confidence 9997 59999999999987775332 222222221 000 01111000000 001 2234444444 448888888899
Q ss_pred HhCCCcHHHHHHHHHHcCCCCC-CccC---CCCceeecccCCCCCCCCccchhhhhccCCCCCCCCCCCHHHHHHHHHHH
Q 012384 215 VLEKNEDALVEKVLKSLPRLRP-TKIA---EDGSIMEWAQDFKDPEVHHRHLSHLFGLFPGHTITIEKNPDLCKAAEKTL 290 (465)
Q Consensus 215 ~Lg~~~~~~~~~w~~i~~~L~p-~~~~---~~G~l~ew~~~~~~~~~~hrh~s~L~~l~P~~~i~~~~~p~l~~aa~~tl 290 (465)
.|+ + .+..++|.+++++|.. +.-+ +.+ +..-..+ +.+..-|..+......|+..|.. ++.. ++.+-+
T Consensus 436 ll~-~-~~~~~~~~~~a~~l~~~F~~~fw~~~~-f~dl~~~--~~~~~~r~~~~~a~~l~~~gi~~---~~~~-~~~~l~ 506 (641)
T COG3408 436 LLG-D-EEDAARLEKIARRLKESFEAKFWNPTG-FYDLALD--DKDVPIRPNFSNAIHLLYTGIVD---PERA-VIIRLA 506 (641)
T ss_pred Hhc-c-cccHHHHHHHHHHHHHHHHHHhhCccc-hHhhhcc--CCCcccCccceecccccccccCc---hHHH-HHHHHH
Confidence 998 4 5667889888888873 2211 111 1111111 11222232222222233333432 2221 222222
Q ss_pred h-----hhC----------------CCCCCh--HHHHHHHHHHhcCChH-HHHHHHHHHHhccCCcccccCCCCcccccc
Q 012384 291 Q-----KRG----------------EEGPGW--SITWKTALWARLHDQE-HAYRMVKRLFNLVDPEHEKHFEGGLYSNLF 346 (465)
Q Consensus 291 ~-----~r~----------------~~~~gw--s~~~~a~~aArlgd~e-~A~~~l~~~~~~~~~~~~~~~~~g~~~nl~ 346 (465)
+ .+| ..++-| -.++.+.-+.|.|..+ ++.+.++..+....+ |..|-+|
T Consensus 507 e~~lltp~GlRTLS~~dp~Y~p~yYH~GtVWP~~~gifv~g~~r~G~~~~~~~~~~~~~~~~a~~--------~~~pE~f 578 (641)
T COG3408 507 EEDLLTPWGLRTLSPDDPRYNPMYYHNGTVWPHDTGIFVLGLRRYGLKDIQALELFDGLFSSASP--------GRIPELF 578 (641)
T ss_pred HHhccCCccccccCCCCCCcCCCcccCCCcccchHHHHHHHHHHcCcccHHHHHHHHHHhhhccc--------CCCcccc
Confidence 1 111 123444 5677777788889888 888888888764432 2113332
Q ss_pred c---CC-CCcccCccc--h-hHHHHHHHHhhccCCeEEeCCCCCccccCceeecceeeecce
Q 012384 347 A---AH-PPFQIDANF--G-FTAAVAEMLVQSTLNDLYLLPALPWDKWSSGCVKGLKARGGE 401 (465)
Q Consensus 347 ~---~h-~pfqidg~~--g-~~~av~emLlqs~~g~i~l~PalP~~~W~~gs~~gL~arG~~ 401 (465)
+ .| |--++...- | ...++.++++--..+..++++. | ..|+..+++ |+.+|..
T Consensus 579 ~g~~~~~P~gc~~QAWS~a~~l~~~~~~~lg~~p~~~~~~~~-p-~~~~~~~~~-~~~~~~~ 637 (641)
T COG3408 579 DGDSPNRPKGCYPQAWSSAEILRSLLQGLLGIKPDGFRLFKT-P-ESLKIVKLS-LKVRGKL 637 (641)
T ss_pred cccCCCCCCCcchhhhhHHHHHHHHHHHHhCCCcCcccccCC-C-ccccceEEE-EEeccee
Confidence 2 22 212222111 1 1112333333333333377888 9 999999998 9988763
No 12
>PF03633 Glyco_hydro_65C: Glycosyl hydrolase family 65, C-terminal domain ; InterPro: IPR005194 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This family of glycosyl hydrolases (GH65 from CAZY) contains this domain and includes vacuolar acid trehalase and maltose phosphorylases. Maltose phosphorylase (MP) is a dimeric enzyme that catalyzes the conversion of maltose and inorganic phosphate into beta-D-glucose-1-phosphate and glucose. The C-terminal domain forms a two layered jelly roll motif. This domain is situated at the base of the catalytic domain, however its function remains unknown [].; PDB: 1H54_A.
Probab=97.21 E-value=0.00092 Score=48.59 Aligned_cols=42 Identities=26% Similarity=0.400 Sum_probs=26.6
Q ss_pred CCCCccccCceeecceeeecceEEEEEEeCCeEEEEEEEeCCCCCcc
Q 012384 380 PALPWDKWSSGCVKGLKARGGETVSICWKDGDLHEVGIYSNYSNNDH 426 (465)
Q Consensus 380 PalP~~~W~~gs~~gL~arG~~~V~~~~~~g~~~~~~i~s~~~~~~~ 426 (465)
|.|| ++|+..+|+ |+.||. .++++.+.+++ ++++.++. .+++
T Consensus 1 P~LP-~~w~~l~F~-~~~rg~-~l~v~i~~~~v-~v~~~~g~-~~l~ 42 (54)
T PF03633_consen 1 PRLP-KQWSSLSFR-LRYRGH-WLEVEITHEKV-TVTLLSGD-APLT 42 (54)
T ss_dssp -----TT-SEEEEE-EEETTE-EEEEEEETTEE-EEEEEESS---EE
T ss_pred CcCC-CccCEeEEE-EEECCE-EEEEEEECCEE-EEEEccCC-ccEE
Confidence 8899 999999998 999987 36666688774 56666554 4766
No 13
>COG3459 Cellobiose phosphorylase [Carbohydrate transport and metabolism]
Probab=97.20 E-value=0.018 Score=63.80 Aligned_cols=104 Identities=15% Similarity=0.125 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHhhHHHH-------------------HHHHHHHHHhcccCCCCeEEECCCCCCCCCcCC
Q 012384 123 AWLCTHLWEHYNYTMDRDFLEKRAYPLL-------------------EGCASFLLDWLIEGHDGYLETNPSTSPEHEFIA 183 (465)
Q Consensus 123 aw~a~~~w~yy~~TgD~~fL~~~~~p~l-------------------~~~A~F~~~~l~~~~~G~y~i~ps~sPE~~~~~ 183 (465)
.|+++.+-+|...|||.++|.| ..|++ ..+.+|-+.++.. .|...+.. +-=|-..+
T Consensus 672 vWl~~a~~~Yl~~TGD~aILdE-~iPf~~~~~l~~~s~e~~TLyEH~~rAld~av~r~g~--~glpli~g--GDWND~ln 746 (1056)
T COG3459 672 VWLLKAIADYLKETGDAAILDE-VIPFIDGPALPEFSKEQATLYEHCARALDLAVARLGP--HGLPLILG--GDWNDGLN 746 (1056)
T ss_pred eeeHHHHHHHHHhcCcHhhhhc-cccccCCCccccccccchhHHHHHHHHHHHHHHhcCC--CCcccccC--Cccccccc
Confidence 5999999999999999999964 55555 3333444433322 23221111 10000011
Q ss_pred C---CCCccccccCchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCC-CCc
Q 012384 184 P---DGKLACVSYSSTMDMAIIREVFSAIISAAEVLEKNEDALVEKVLKSLPRLR-PTK 238 (465)
Q Consensus 184 ~---~G~~~~~~~n~t~d~~~v~~~l~~~~~~a~~Lg~~~~~~~~~w~~i~~~L~-p~~ 238 (465)
+ .|+ .-+.+-==++-..|+..+++|+.++.. +...+|++-.+.|. .+.
T Consensus 747 ~vg~~g~-----geSv~lgW~l~~tlq~F~~lak~r~d~--~r~~~~~~~~ea~~~~~~ 798 (1056)
T COG3459 747 LVGNGGK-----GESVWLGWFLALTLQTFKELAKARGDE--ARADTWAKHVEALREALE 798 (1056)
T ss_pred ccccCCc-----cceeehhhHHHHHHHHHHHHHHhcCcH--HHHHHHHHHHHHHHHHHH
Confidence 1 111 011122223445567778888888854 56788998888887 443
No 14
>PRK10137 alpha-glucosidase; Provisional
Probab=96.06 E-value=0.84 Score=50.96 Aligned_cols=45 Identities=24% Similarity=0.302 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHhhHHHHHHHHHHHHHhcccCCCCeE
Q 012384 124 WLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIEGHDGYL 169 (465)
Q Consensus 124 w~a~~~w~yy~~TgD~~fL~~~~~p~l~~~A~F~~~~l~~~~~G~y 169 (465)
-.|..+|++|+.|+|++||+ +.||-|...-++|...-..+.+|..
T Consensus 421 L~a~av~~vy~~t~d~~fl~-~lyPkL~a~h~Ww~~~RD~dg~Gl~ 465 (786)
T PRK10137 421 LAAWSVMEVYNVTQDKAWLA-EMYPKLVAYHDWWLRNRDHNGNGVP 465 (786)
T ss_pred HHHHHHHHHHHHhCCHHHHH-HHHHHHHHHHHHHHhcCCCCCCcee
Confidence 44556789999999999997 6999999999999998665657743
No 15
>TIGR01561 gde_arch glycogen debranching enzyme, archaeal type, putative. The seed for this model is composed of two uncharacterized archaeal proteins from Methanosarcina acetivorans and Sulfolobus solfataricus. Trusted cutoff is set so that essentially only archaeal members hit the model. The notable exceptions to archaeal membership are the Gram positive Clostridium perfringens which scores much better than some other archaea and the Cyanobacterium Nostoc sp. which scores just above the trusted cutoff. Noise cutoff is set to exclude the characterized eukaryotic glycogen debranching enzyme in S. cerevisiae. These cutoffs leave the prokaryotes Porphyromonas gingivalis and Deinococcus radiodurans below trusted but above noise. Multiple alignments including these last two species exhibit sequence divergence which may suggest a subtly different function for these prokaryotic proteins.
Probab=95.31 E-value=0.2 Score=54.13 Aligned_cols=105 Identities=10% Similarity=0.068 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHhhHHHHHHHHHHHHHhc---c-cCCCCeEEECCCCCCCCCcCCC-CCCcc--ccccC
Q 012384 122 GAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWL---I-EGHDGYLETNPSTSPEHEFIAP-DGKLA--CVSYS 194 (465)
Q Consensus 122 ~aw~a~~~w~yy~~TgD~~fL~~~~~p~l~~~A~F~~~~l---~-~~~~G~y~i~ps~sPE~~~~~~-~G~~~--~~~~n 194 (465)
+.|....+.+|+++|+|.++++ +.+|.|+++.+-|.+=. + .|+||-+.-. .+ -++.+. .|... +-.--
T Consensus 350 tLWfi~al~~Y~~~tgD~~~l~-~l~p~l~~ii~~y~~G~~~~i~~d~dGLi~~g---~~-lTWMDa~~g~~~~tPR~G~ 424 (575)
T TIGR01561 350 SLWAIHAIDKTFAYSQDFLFIR-DVVDKVLDIIDNYCAGNDFAIGMDNDLIFHKG---AP-LTWMDAKVDERAVTPRAGA 424 (575)
T ss_pred HHHHHHHHHHHHHHhCCHHHHH-HHHHHHHHHHHHHhcCCCcEEEECCCccEeCC---CC-CCCCCCCCCCccCCCCCCc
Confidence 5699999999999999999996 69999999988775510 0 1223422111 11 123221 01000 01113
Q ss_pred chHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCC
Q 012384 195 STMDMAIIREVFSAIISAAEVLEKNEDALVEKVLKSLPRLR 235 (465)
Q Consensus 195 ~t~d~~~v~~~l~~~~~~a~~Lg~~~~~~~~~w~~i~~~L~ 235 (465)
+.--|++++..|+.+.++++.+|.+ . .+|++.+++|.
T Consensus 425 ~VEInALwYnAL~~~a~la~~~g~~-a---~~y~~~A~~lk 461 (575)
T TIGR01561 425 ACEINALWYNALKTAEFLGNELGED-A---ESLEEKAAGVA 461 (575)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCcc-H---HHHHHHHHHHH
Confidence 6788899999999999999999854 3 34555555554
No 16
>PRK13271 treA trehalase; Provisional
Probab=92.29 E-value=4 Score=44.21 Aligned_cols=86 Identities=12% Similarity=0.139 Sum_probs=54.8
Q ss_pred CCCccccccccchhcccc-------CCCCccccHHHHHHHHHHHHhHHHHHHHhcCC--CceEEccccCCCCCCCCCCCC
Q 012384 42 HGTPHVNINLEMNYWQSL-------PCNLSECQEPLFDFLTYLSINGSKTAQVNYLA--SGWVIHHKTDIWAKSSADRGK 112 (465)
Q Consensus 42 ~~dyh~n~N~qm~ywp~~-------~~n~~e~~~~l~~~~~~~l~~~r~~A~~~yG~--~G~~~p~~~~~~g~~~~~~~~ 112 (465)
||-|. |++||=.| .+++.|+++.+++-. ...-.+ ||+ .|-..- ..+.+.|
T Consensus 154 GGRFr-----E~YYWDSY~i~~GLl~s~~~~~a~~mi~Nf-------~~~i~~-yG~IPNg~R~Y----Yl~RSQP---- 212 (569)
T PRK13271 154 GGRFR-----EVYYWDSYFTMLGLAESGHWDKVADMVANF-------AHEIDT-WGHIPNGNRSY----YLSRSQP---- 212 (569)
T ss_pred CCCcc-----hhhhhHHHHHHHhhHhcCCHHHHHHHHHHH-------HHHHHH-hCcCcCCchhh----cccCCCC----
Confidence 78775 88888553 466666666555332 222233 675 444321 1222222
Q ss_pred cccccCccCHHHHHHHHHHHHHhcCCHHHHHHhhHHHHHHHHHHHHHh
Q 012384 113 VVWALWPMGGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDW 160 (465)
Q Consensus 113 ~~~~~~~~~~aw~a~~~w~yy~~TgD~~fL~~~~~p~l~~~A~F~~~~ 160 (465)
..++.++..|++.|+| +||+ +.+|.|+.=-+||.+-
T Consensus 213 ----------P~l~~Mv~~~~~~~~~-~~l~-~~lp~l~kEy~~Wm~~ 248 (569)
T PRK13271 213 ----------PFFALMVELLAQHEGD-AALK-QYLPQMQKEYAYWMEG 248 (569)
T ss_pred ----------hhHHHHHHHHHhcCcH-HHHH-HHHHHHHHHHHHHhCC
Confidence 2677788899999998 5997 7999888888999873
No 17
>COG4354 Predicted bile acid beta-glucosidase [Carbohydrate transport and metabolism]
Probab=89.05 E-value=0.57 Score=49.50 Aligned_cols=92 Identities=20% Similarity=0.381 Sum_probs=61.8
Q ss_pred CccCHHHHHHHHHHHHHhcCCHHHHHHhhHHHHHHHHHHHHHhcccCCCCeEEECCCCCCCCCcCCCCCCccccccCchH
Q 012384 118 WPMGGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIEGHDGYLETNPSTSPEHEFIAPDGKLACVSYSSTM 197 (465)
Q Consensus 118 ~~~~~aw~a~~~w~yy~~TgD~~fL~~~~~p~l~~~A~F~~~~l~~~~~G~y~i~ps~sPE~~~~~~~G~~~~~~~n~t~ 197 (465)
|.-.+..+...++.+|.||+|.+||+ +.||.++++.+....+ ..+.||- ...+-.|.+.+ |+.. +--=++|
T Consensus 440 wkDlgp~fVLlvYrdf~~T~D~eFL~-e~y~~iv~~iD~~~~~-d~d~Dgi--P~~~g~~d~~f---Da~~--i~G~ssy 510 (721)
T COG4354 440 WKDLGPDFVLLVYRDFKFTNDREFLK-EVYPVIVEAIDWLKRF-DQDNDGI--PENSGAMDNTF---DATR--IQGHSSY 510 (721)
T ss_pred hhhcCCcEEeeehhhhhhcccHHHHH-HHHHHHHHHHHHHHhh-cccCCCC--CcccCCccccc---ccce--eechhhh
Confidence 43334456778999999999999997 5999999999976544 3333561 22233334443 1110 1122678
Q ss_pred HHHHHHHHHHHHHHHHHHhCC
Q 012384 198 DMAIIREVFSAIISAAEVLEK 218 (465)
Q Consensus 198 d~~~v~~~l~~~~~~a~~Lg~ 218 (465)
..+|.-..|.+++++++.|+.
T Consensus 511 ~~sl~iaal~A~l~is~~l~~ 531 (721)
T COG4354 511 CGSLFIAALIAALEISKYLLD 531 (721)
T ss_pred hhHHHHHHHHHHHHHHHHHhh
Confidence 888888888899999888764
No 18
>PRK13272 treA trehalase; Provisional
Probab=85.69 E-value=53 Score=35.48 Aligned_cols=86 Identities=15% Similarity=0.234 Sum_probs=55.1
Q ss_pred CCCccccccccchhccc-------cCCCCccccHHHHHHHHHHHHhHHHHHHHhcCC--CceEEccccCCCCCCCCCCCC
Q 012384 42 HGTPHVNINLEMNYWQS-------LPCNLSECQEPLFDFLTYLSINGSKTAQVNYLA--SGWVIHHKTDIWAKSSADRGK 112 (465)
Q Consensus 42 ~~dyh~n~N~qm~ywp~-------~~~n~~e~~~~l~~~~~~~l~~~r~~A~~~yG~--~G~~~p~~~~~~g~~~~~~~~ 112 (465)
||-|. |++||=. +.+++.++++.+++-. ..--.+ ||+ .|-..- -.+.+.|
T Consensus 155 GGRFr-----E~YYWDSY~i~~GLl~s~~~~~a~~mi~Nf-------~~~i~~-yGfIPNG~R~Y----Yl~RSQP---- 213 (542)
T PRK13272 155 GGRFR-----EVYYWDSYFTMLGLVKSGQTTLSRQMLDNF-------AYLIDT-YGHIPNGNRTY----YLSRSQP---- 213 (542)
T ss_pred CCCcc-----chhhhHHHHHHHhhhhcCcHHHHHHHHHHH-------HHHHHH-cCcCcCCchhc----cccCCCc----
Confidence 77775 8888855 3566666666655332 222233 675 444321 1222222
Q ss_pred cccccCccCHHHHHHHHHHHHHhcCCHHHHHHhhHHHHHHHHHHHHHh
Q 012384 113 VVWALWPMGGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDW 160 (465)
Q Consensus 113 ~~~~~~~~~~aw~a~~~w~yy~~TgD~~fL~~~~~p~l~~~A~F~~~~ 160 (465)
..++.++..|++.|+|..| + +.+|.|++=-+||.+-
T Consensus 214 ----------P~l~~Mv~~~~~~t~d~~~-~-~~lp~l~kEy~~Wm~~ 249 (542)
T PRK13272 214 ----------PFFSYMVELQAGVEGDAAY-Q-RYLPQLQKEYAYWMQG 249 (542)
T ss_pred ----------hhHHHHHHHHHHhcChHHH-H-HHHHHHHHHHHHHcCC
Confidence 2678889999999999987 4 6999888777999863
No 19
>KOG2119 consensus Predicted bile acid beta-glucosidase [Carbohydrate transport and metabolism]
Probab=82.77 E-value=4.3 Score=44.23 Aligned_cols=97 Identities=15% Similarity=0.208 Sum_probs=66.0
Q ss_pred HHHHHHHHHhcCCHHHHHHhhHHHHHHHHHHHHHhcccCCCCeEEECCCCCCCCCcCCCCCCcccccc-CchHHHHHHHH
Q 012384 126 CTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIEGHDGYLETNPSTSPEHEFIAPDGKLACVSY-SSTMDMAIIRE 204 (465)
Q Consensus 126 a~~~w~yy~~TgD~~fL~~~~~p~l~~~A~F~~~~l~~~~~G~y~i~ps~sPE~~~~~~~G~~~~~~~-n~t~d~~~v~~ 204 (465)
...+|.=|-.|||+.||+ ..||..+.+.+..+.| .+|.||- |...--|..++ +++.+. =++|-=.+.-.
T Consensus 563 VLqvYRD~~~tgd~~flk-~~wpsv~~ime~l~~f-DKD~DGm--IEN~GfpDQTY------D~W~~tGvSAYCGgLWlA 632 (879)
T KOG2119|consen 563 VLQVYRDYVATGDEKFLK-AVWPSVYAIMEYLEQF-DKDNDGM--IENEGFPDQTY------DAWSMTGVSAYCGGLWLA 632 (879)
T ss_pred EEEEEeeeEEeccHHHHH-HHHHHHHHHHHHHHhh-cccCCcc--cccCCCCCccc------cceEEecchhhhhHHHHH
Confidence 334555566799999998 5999999998888777 4555784 43333333332 223233 35899999999
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHcCCC
Q 012384 205 VFSAIISAAEVLEKNEDALVEKVLKSLPRL 234 (465)
Q Consensus 205 ~l~~~~~~a~~Lg~~~~~~~~~w~~i~~~L 234 (465)
.|+.++++|..+|.+ +.....++++++=
T Consensus 633 ALqa~~amA~~~g~~--~~~~~f~~kleka 660 (879)
T KOG2119|consen 633 ALQAASAMARQIGDP--NTQDYFNNKLEKA 660 (879)
T ss_pred HHHHHHHHHHHhCCh--hHHHHHHHHHHHH
Confidence 999999999999965 3344455554443
No 20
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=80.53 E-value=39 Score=40.40 Aligned_cols=37 Identities=3% Similarity=0.039 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHhcCC-HHHHH---------------------HhhHHHHHHHHHHHH
Q 012384 122 GAWLCTHLWEHYNYTMD-RDFLE---------------------KRAYPLLEGCASFLL 158 (465)
Q Consensus 122 ~aw~a~~~w~yy~~TgD-~~fL~---------------------~~~~p~l~~~A~F~~ 158 (465)
..|..+++.+|+++++| .+.|+ +..+|+|+++.+-+.
T Consensus 1093 ~lWfi~AIqdY~~~~~dg~~iL~~~v~R~fp~Ddt~~~~~~~~~~~l~~~iqeIl~~h~ 1151 (1464)
T TIGR01531 1093 AWFWLQCIQDYVEIVPNGEKILKDPVRRIYPDDDSIPVDDGRADQYLFEVIYEALQKHF 1151 (1464)
T ss_pred HHHHHHHHHHHHHHcCCHHHhhhccccccccccccccccchhHHHHHHHHHHHHHHHHH
Confidence 45899999999999999 55543 345889999998887
No 21
>PF06824 DUF1237: Protein of unknown function (DUF1237); InterPro: IPR008313 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2P0V_B 3QSP_B 3QPF_A 3QRY_A 3ON6_A 3QT9_A 3QT3_A 2NVP_A 3P2C_B.
Probab=79.10 E-value=9.3 Score=39.63 Aligned_cols=114 Identities=10% Similarity=-0.006 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHhhHHHHHHHHHHHHHhcc--cCC-----CCeEEECC-CCCC-CCCcC-------CCC
Q 012384 122 GAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLI--EGH-----DGYLETNP-STSP-EHEFI-------APD 185 (465)
Q Consensus 122 ~aw~a~~~w~yy~~TgD~~fL~~~~~p~l~~~A~F~~~~l~--~~~-----~G~y~i~p-s~sP-E~~~~-------~~~ 185 (465)
.+......|.||+.|||.+|+.+.....++.+.+-|..-.. .++ .+.|...- +..+ |.-+. ...
T Consensus 130 L~~~l~La~~y~~~Tgd~~~f~~~~~~A~~~il~~~~~eq~~t~~~~~~~~~s~Y~F~R~~~~~tdtl~~~G~G~pv~~t 209 (424)
T PF06824_consen 130 LCYFLQLAYQYWKATGDTSFFDEDWLRAVRLILDTWRTEQRPTYDEDHEGLPSPYRFQRPTCRPTDTLPNDGRGNPVAYT 209 (424)
T ss_dssp HHHHHHHHHHHHHHH--GTTSSHHHHHHHHHHHHHHHHTTG------SSSCS-S---BESBSSGGGS-HHHHT-S----S
T ss_pred hhHHHHHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHhhhccccccCCCcceeeccCCCCCccccCCCcCCcCCCC
Confidence 45566778899999999999987766777777777765433 111 12233321 2222 22210 001
Q ss_pred CCc---cccccC------chHHHHHHHHHHHHHHHHHHHhCCCc-HHHHHHHHHHcCCCC
Q 012384 186 GKL---ACVSYS------STMDMAIIREVFSAIISAAEVLEKNE-DALVEKVLKSLPRLR 235 (465)
Q Consensus 186 G~~---~~~~~n------~t~d~~~v~~~l~~~~~~a~~Lg~~~-~~~~~~w~~i~~~L~ 235 (465)
|.. ....++ ....|+++.-.|+.+.++.+.+..++ .++.++.+++++.+.
T Consensus 210 Gli~S~FRPSDDa~~y~yliPsNm~a~v~L~~laei~~~~~~~~~~~la~~~~~la~eI~ 269 (424)
T PF06824_consen 210 GLIWSGFRPSDDACIYPYLIPSNMFAVVALEYLAEILRALGWDDSAELAERARALADEIR 269 (424)
T ss_dssp SS-B-SB-TTSSB-SSSEEHHHHHHHHHHHHHHHHHHHHTT-THHHHHHHHHHHHHHHHH
T ss_pred CceecCcCCCCcchhcCcCChHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 110 011223 35789999999999999999888762 145556655555554
No 22
>PLN02567 alpha,alpha-trehalase
Probab=75.40 E-value=5.3 Score=43.23 Aligned_cols=86 Identities=22% Similarity=0.271 Sum_probs=55.9
Q ss_pred CCCccccccccchhccc-------cCCCCccccHHHHHHHHHHHHhHHHHHHHhcCC--CceEEccccCCCCCCCCCCCC
Q 012384 42 HGTPHVNINLEMNYWQS-------LPCNLSECQEPLFDFLTYLSINGSKTAQVNYLA--SGWVIHHKTDIWAKSSADRGK 112 (465)
Q Consensus 42 ~~dyh~n~N~qm~ywp~-------~~~n~~e~~~~l~~~~~~~l~~~r~~A~~~yG~--~G~~~p~~~~~~g~~~~~~~~ 112 (465)
||-|. |++||=. +.+++.++++.+++-. ...-.+ ||+ .|...- -.+.+-|
T Consensus 147 GgRFr-----E~yyWDSy~i~~GLl~s~~~~~A~~mi~Nf-------~~~i~~-~GfIPNg~R~Y----yl~RSQP---- 205 (554)
T PLN02567 147 GSRFR-----EVYYWDSYWVIRGLLASKMYETAKGVVENL-------LYLVDT-YGFVPNGARAY----YTNRSQP---- 205 (554)
T ss_pred CCCcC-----ccchHHHHHHHHHHHhCCCHHHHHHHHHHH-------HHHHHH-cCcCCCCCccc----ccCCCCc----
Confidence 88876 8888844 3566667776666433 222222 664 443210 0122222
Q ss_pred cccccCccCHHHHHHHHHHHHHhcCCHHHHHHhhHHHHHHHHHHHHH
Q 012384 113 VVWALWPMGGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLD 159 (465)
Q Consensus 113 ~~~~~~~~~~aw~a~~~w~yy~~TgD~~fL~~~~~p~l~~~A~F~~~ 159 (465)
.-++.+++.+|+.|+|++||+ +.+|.|+.==+||.+
T Consensus 206 ----------Plla~mV~~~~~~t~d~~~l~-~~lp~L~~E~~~W~~ 241 (554)
T PLN02567 206 ----------PLLSAMVLAVYAATKDVELVR-RALPALLKEHAFWTS 241 (554)
T ss_pred ----------HHHHHHHHHHHHhcCcHHHHH-HHHHHHHHHHHHHhc
Confidence 267888999999999999997 699977777789977
No 23
>PF01204 Trehalase: Trehalase; InterPro: IPR001661 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 37 GH37 from CAZY comprises enzymes with only one known activity; trehalase (3.2.1.28 from EC). Trehalase is the enzyme responsible for the degradation of the disaccharide alpha,alpha-trehalose yielding two glucose subunits []. It is an enzyme found in a wide variety of organisms and whose sequence has been highly conserved throughout evolution.; GO: 0004555 alpha,alpha-trehalase activity, 0005991 trehalose metabolic process; PDB: 2JJB_B 2WYN_B 2JG0_A 2JF4_A 3C67_A 3D3I_B 3C69_A 3C68_A 2Z07_B.
Probab=62.02 E-value=6.8 Score=42.06 Aligned_cols=86 Identities=28% Similarity=0.383 Sum_probs=53.6
Q ss_pred CCCccccccccchhccc-------cCCCCccccHHHHHHHHHHHHhHHHHHHHhcCC--CceEEccccCCCCCCCCCCCC
Q 012384 42 HGTPHVNINLEMNYWQS-------LPCNLSECQEPLFDFLTYLSINGSKTAQVNYLA--SGWVIHHKTDIWAKSSADRGK 112 (465)
Q Consensus 42 ~~dyh~n~N~qm~ywp~-------~~~n~~e~~~~l~~~~~~~l~~~r~~A~~~yG~--~G~~~p~~~~~~g~~~~~~~~ 112 (465)
||-|- ||+||=. +.+++.++++.+++-. ..--.+ ||+ .|...- --+.+-|
T Consensus 123 GGRF~-----E~YyWDSYfi~~GLl~s~~~~~a~~mi~Nf-------~~~i~~-yGfipNg~R~Y----yl~RSQP---- 181 (512)
T PF01204_consen 123 GGRFR-----EMYYWDSYFIILGLLASGMYETAKGMIENF-------LYLIDR-YGFIPNGNRTY----YLNRSQP---- 181 (512)
T ss_dssp BTTB------S-BHHHHHHHHHHHHHTT-HHHHHHHHHHH-------HHHHHH-HSS--SBSBGG----GTT---S----
T ss_pred CCCcc-----cchhHhHHHHHHHHHHcCCHHHHHHHHHHH-------HHHHHH-hCcCCCCccHH----hccCCCC----
Confidence 77665 8888854 4567767666655433 222233 675 444421 0111222
Q ss_pred cccccCccCHHHHHHHHHHHHHhcCCHHHHHHhhHHHHHHHHHHHHH
Q 012384 113 VVWALWPMGGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLD 159 (465)
Q Consensus 113 ~~~~~~~~~~aw~a~~~w~yy~~TgD~~fL~~~~~p~l~~~A~F~~~ 159 (465)
..++.+++.+|+.|+|++||+ +.+|.|++=-+||.+
T Consensus 182 ----------Plla~mV~~~y~~t~d~~~l~-~~lp~L~ke~~fW~~ 217 (512)
T PF01204_consen 182 ----------PLLAQMVREYYEATKDKAFLR-EALPALEKEYEFWMD 217 (512)
T ss_dssp ------------HHHHHHHHHHHHHTCHHHH-HHHHHHHHHHHHHCC
T ss_pred ----------chHHHHHHHHHHhcCCHHHHH-HHHHHHHHHHHHHCC
Confidence 267888999999999999997 699999999999984
No 24
>PLN02703 beta-fructofuranosidase
Probab=50.17 E-value=3.7e+02 Score=29.18 Aligned_cols=146 Identities=11% Similarity=-0.096 Sum_probs=76.7
Q ss_pred hccccCCCCccccHHHHHHHHHHHHhHHHHHHHhcCCCceEEcccc----CC-CCCC--------CCCCCCcccccCc-c
Q 012384 55 YWQSLPCNLSECQEPLFDFLTYLSINGSKTAQVNYLASGWVIHHKT----DI-WAKS--------SADRGKVVWALWP-M 120 (465)
Q Consensus 55 ywp~~~~n~~e~~~~l~~~~~~~l~~~r~~A~~~yG~~G~~~p~~~----~~-~g~~--------~~~~~~~~~~~~~-~ 120 (465)
...+++.+.+|+.+.++.....+-..-+.-+.- -.-+| ++|.+- ++ .+.. ..++...-+-..+ -
T Consensus 180 aLafLl~Ge~eIVrnFl~~tL~lq~~ektld~~-q~g~G-~mPaSfkv~~~~~~~~~~~~ee~l~aDfGe~AIgRV~pVD 257 (618)
T PLN02703 180 GIAFLLKGEYDIVRNFILYTLQLQSWEKTMDCH-SPGQG-LMPCSFKVKTVPLDGDDSMTEEVLDPDFGEAAIGRVAPVD 257 (618)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhhhhHHHHHhc-cCCCC-CcCceeeecccccccccccccccccCCcCccceeeecccc
Confidence 345678999999999998777655544444442 13367 556442 11 1110 0001000000011 1
Q ss_pred CHHHHHHHHHHHHHhcCCHHHHHHhhH--HHHHHHHHHHHHhcccCCCCeEEECCCCCCCCCcCCCCCCccccccCchHH
Q 012384 121 GGAWLCTHLWEHYNYTMDRDFLEKRAY--PLLEGCASFLLDWLIEGHDGYLETNPSTSPEHEFIAPDGKLACVSYSSTMD 198 (465)
Q Consensus 121 ~~aw~a~~~w~yy~~TgD~~fL~~~~~--p~l~~~A~F~~~~l~~~~~G~y~i~ps~sPE~~~~~~~G~~~~~~~n~t~d 198 (465)
.+.|-...++.|...|||.+|.+ +.- +-|+-+.+..+.. ..|....+ ..|..|- ..+ +.+..---+-++
T Consensus 258 S~LWWIIllraY~k~TgD~sf~e-~~~~Q~gI~liL~LcLa~-~Fd~fPtL-lVpDgs~---miD---RrMgv~G~PLEi 328 (618)
T PLN02703 258 SGLWWIILLRAYGKCTGDLSVQE-RVDVQTGIKMILKLCLAD-GFDMFPTL-LVTDGSC---MID---RRMGIHGHPLEI 328 (618)
T ss_pred chhHHHHHHHHHHHhhccHHHhh-hhhHHHHHHHHHHHHccC-cCCCCceE-eccCCCc---hhc---cccCcCCccHHH
Confidence 35688888999999999999996 333 4555554443332 12212333 2232222 000 001122347788
Q ss_pred HHHHHHHHHHHHH
Q 012384 199 MAIIREVFSAIIS 211 (465)
Q Consensus 199 ~~~v~~~l~~~~~ 211 (465)
+++..+.|+.+.+
T Consensus 329 QaLfy~ALR~a~~ 341 (618)
T PLN02703 329 QALFYSALVCARE 341 (618)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888887765
No 25
>PRK13270 treF trehalase; Provisional
Probab=47.68 E-value=4e+02 Score=28.95 Aligned_cols=166 Identities=13% Similarity=0.166 Sum_probs=81.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCC-CC---ccC-CCCceeecccCCCCCCCCccchhhhhccCC
Q 012384 196 TMDMAIIREVFSAIISAAEVLEKNEDALVEKVLKSLPRLR-PT---KIA-EDGSIMEWAQDFKDPEVHHRHLSHLFGLFP 270 (465)
Q Consensus 196 t~d~~~v~~~l~~~~~~a~~Lg~~~~~~~~~w~~i~~~L~-p~---~~~-~~G~l~ew~~~~~~~~~~hrh~s~L~~l~P 270 (465)
.-=|+++......+.++++.+|.+ +..++|++.++++. .+ -.+ ..|....... ..........+.++++|=
T Consensus 349 VDLNaiL~~~e~~LA~~a~~lG~~--~~a~~~~~~A~~r~~AI~~~LWnee~G~~~DYD~--~~~~~~~~s~a~f~PLwa 424 (549)
T PRK13270 349 IDLNAFLYKLESAIANISALKGEK--ETEALFRQKASARRDAVNRYLWDDENGIYRDYDW--RREQLALFSAAAIVPLYV 424 (549)
T ss_pred hhHHHHHHHHHHHHHHHHHHhCCh--HHHHHHHHHHHHHHHHHHHhccCcccCeEEeccc--ccCccccccHHHHHHHHh
Confidence 344678888888888999999964 34556666555443 11 112 3444332211 111112223444556652
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhh----CC-------------CCCChHH-HHHHHHH-HhcCChHHHHHHHHHHHhccCC
Q 012384 271 GHTITIEKNPDLCKAAEKTLQKR----GE-------------EGPGWSI-TWKTALW-ARLHDQEHAYRMVKRLFNLVDP 331 (465)
Q Consensus 271 ~~~i~~~~~p~l~~aa~~tl~~r----~~-------------~~~gws~-~~~a~~a-Arlgd~e~A~~~l~~~~~~~~~ 331 (465)
+. -+|+..+.+.+.+..+ |. .-++|.+ .|+++.. .|.|..+.|.++=++.++....
T Consensus 425 -G~----a~~~qa~~l~~~l~~~ll~pGGl~tS~~~sgqQWD~PN~WaPlqwmiieGL~ryG~~~lA~~LA~rwl~~~~~ 499 (549)
T PRK13270 425 -GM----ANHEQADRLANAVRSRLLTPGGILASEYETGEQWDKPNGWAPLQWMAIQGFKMYGDDLLGDEIARSWLKTVNQ 499 (549)
T ss_pred -CC----CCHHHHHHHHHHHHHhcccCCCcCCCCCCCcccCCCCCCCccHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 22 2344443444444432 11 1247864 3444433 5668888888877776663210
Q ss_pred cccccCCCCccccc--------ccCCCCcccCccchhHHHHHHHHhhcc
Q 012384 332 EHEKHFEGGLYSNL--------FAAHPPFQIDANFGFTAAVAEMLVQST 372 (465)
Q Consensus 332 ~~~~~~~~g~~~nl--------~~~h~pfqidg~~g~~~av~emLlqs~ 372 (465)
.....++.+... .+..+-+.+-..||-++||.-.|+...
T Consensus 500 --~~~~~g~m~EKYdv~~~~g~~GgGGEY~~q~GFGWTNGV~l~~l~~y 546 (549)
T PRK13270 500 --FYQEHHKLIEKYHIAGGVPREGGGGEYPLQDGFGWTNGVVRRLIGLY 546 (549)
T ss_pred --HHhhcCeeEEEecCCCCCCCCCCCCCcCCCCCcCcHHHHHHHHHHHh
Confidence 000001111110 011122334456899999987776543
No 26
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=45.72 E-value=34 Score=22.98 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=21.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHh
Q 012384 304 WKTALWARLHDQEHAYRMVKRLFN 327 (465)
Q Consensus 304 ~~a~~aArlgd~e~A~~~l~~~~~ 327 (465)
.++..+.++|+.++|.+.+++.++
T Consensus 6 ~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 6 ALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 357788999999999999999998
No 27
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=41.73 E-value=40 Score=19.96 Aligned_cols=23 Identities=13% Similarity=0.065 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHH
Q 012384 301 SITWKTALWARLHDQEHAYRMVK 323 (465)
Q Consensus 301 s~~~~a~~aArlgd~e~A~~~l~ 323 (465)
....++....+.||.++|...+.
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34557788899999999998774
No 28
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=41.45 E-value=52 Score=25.83 Aligned_cols=27 Identities=22% Similarity=0.437 Sum_probs=22.6
Q ss_pred eeeecc-eEEEEEEeCCeEEEEEEEeCC
Q 012384 395 LKARGG-ETVSICWKDGDLHEVGIYSNY 421 (465)
Q Consensus 395 L~arG~-~~V~~~~~~g~~~~~~i~s~~ 421 (465)
-|..|| +.|.+..++|+++.+.|.++-
T Consensus 11 ~rf~~G~v~v~~~V~~G~I~~i~i~gDf 38 (86)
T PF10437_consen 11 RRFPWGTVEVHLNVKNGIIKDIKIYGDF 38 (86)
T ss_dssp EEETTEEEEEEEEEETTEEEEEEEEECB
T ss_pred eEcCCceEEEEEEEECCEEEEEEEECCC
Confidence 566677 788888999999999999863
No 29
>PF00723 Glyco_hydro_15: Glycosyl hydrolases family 15; InterPro: IPR011613 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 15 GH15 from CAZY comprises enzymes with several known activities; glucoamylase (3.2.1.3 from EC); alpha-glucosidase (3.2.1.20 from EC); glucodextranase (3.2.1.70 from EC). Glucoamylase (GA) catalyses the release of D-glucose from the non-reducing ends of starch and other oligo- or poly-saccharides. Studies of fungal GA have indicated 3 closely-clustered acidic residues that play a role in the catalytic mechanism []. This region is also conserved in a recently sequenced bacterial GA []. The 3D structure of the pseudo-tetrasaccharide acarbose complexed with glucoamylase II(471) from Aspergillus awamori var. X100 has been determined to 2.4A resolution []. The protein belongs to the mainly-alpha class, and contains 19 helices and 9 strands. This protein is found in higher organisms, and is represented by phosphorylase kinase subunits.; GO: 0004339 glucan 1,4-alpha-glucosidase activity, 0005976 polysaccharide metabolic process; PDB: 1GAI_A 1GAH_A 1LF6_B 1LF9_A 3EQA_A 1AYX_A 2F6D_A 2FBA_A 1DOG_A 1GLM_A ....
Probab=41.15 E-value=57 Score=34.26 Aligned_cols=89 Identities=12% Similarity=0.141 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHhhHHH--HHHHHHHHHHhcccCCCCeEEECCCCCC-CCCcCCCCCCccccccCchH-
Q 012384 122 GAWLCTHLWEHYNYTMDRDFLEKRAYPL--LEGCASFLLDWLIEGHDGYLETNPSTSP-EHEFIAPDGKLACVSYSSTM- 197 (465)
Q Consensus 122 ~aw~a~~~w~yy~~TgD~~fL~~~~~p~--l~~~A~F~~~~l~~~~~G~y~i~ps~sP-E~~~~~~~G~~~~~~~n~t~- 197 (465)
.+-.+..+|+|.+.. ..+. ...+++ ++..++|....... |+.+. |+.. | -..|
T Consensus 128 ~gl~l~~l~~~~~~g--~~~~-~~~~~~~~I~~~~~yi~~~w~~---------pd~dlWEe~~----g-------~~~f~ 184 (448)
T PF00723_consen 128 PGLRLLALWQYIDSG--LQII-YTYWEVSFIKNDLDYIERNWRE---------PDFDLWEERN----G-------IHFFT 184 (448)
T ss_dssp HHHHHHHHHHHHHTT--HHHH-HTHHHHHTHHHHHHHHHHHTTS---------BEE-TTSS-E----E-------EEHH-
T ss_pred hHHHHHHHHHHHHcC--CCcc-cccchhHHHHHHHHHHHHHcCC---------cCCccccccC----C-------CCccc
Confidence 566677777773332 4444 468888 88888887776321 24455 6432 1 2567
Q ss_pred -HHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCC
Q 012384 198 -DMAIIREVFSAIISAAEVLEKNEDALVEKVLKSLPRLR 235 (465)
Q Consensus 198 -d~~~v~~~l~~~~~~a~~Lg~~~~~~~~~w~~i~~~L~ 235 (465)
|.++++..|..+++.++.+|.. +..++|++.++++.
T Consensus 185 ~S~~~~~~AL~~a~~~a~~~g~~--~~~~~~~~~a~~i~ 221 (448)
T PF00723_consen 185 ASSAMQWAALLRAANLAELFGDP--GDAERWRETADEIR 221 (448)
T ss_dssp -HHHHHHHHHHHHHHHHHHTT-H--HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHcCCc--hHHHHHHHHHHHHH
Confidence 9999999999999999999854 34556665555554
No 30
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=39.43 E-value=69 Score=19.26 Aligned_cols=23 Identities=13% Similarity=0.143 Sum_probs=19.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh
Q 012384 305 KTALWARLHDQEHAYRMVKRLFN 327 (465)
Q Consensus 305 ~a~~aArlgd~e~A~~~l~~~~~ 327 (465)
....+++.|+.++|.++|....+
T Consensus 6 li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 6 LIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 34457999999999999998776
No 31
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=38.62 E-value=63 Score=19.88 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=20.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHh
Q 012384 304 WKTALWARLHDQEHAYRMVKRLFN 327 (465)
Q Consensus 304 ~~a~~aArlgd~e~A~~~l~~~~~ 327 (465)
..+.....+|+.++|.+.+++.++
T Consensus 6 ~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 6 NLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCchHHHHHHHHHHH
Confidence 367788899999999999999987
No 32
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=38.54 E-value=61 Score=20.64 Aligned_cols=27 Identities=7% Similarity=0.151 Sum_probs=22.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhc
Q 012384 302 ITWKTALWARLHDQEHAYRMVKRLFNL 328 (465)
Q Consensus 302 ~~~~a~~aArlgd~e~A~~~l~~~~~~ 328 (465)
...++.++...|+.++|.+++.+.+..
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 445788889999999999999998873
No 33
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=37.63 E-value=2.1e+02 Score=28.92 Aligned_cols=42 Identities=12% Similarity=-0.074 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHhhHHHHHHHHHHHHHhcccCCCCeE
Q 012384 122 GAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIEGHDGYL 169 (465)
Q Consensus 122 ~aw~a~~~w~yy~~TgD~~fL~~~~~p~l~~~A~F~~~~l~~~~~G~y 169 (465)
-+.++.++-+.|+.|+|+++|. ..+++++|+..++. +++|.+
T Consensus 117 ~a~~l~ala~~~~at~d~~~l~-----~A~~~~~~l~~~~~-~~~g~~ 158 (384)
T cd00249 117 HAFALLAAAQAAKVGGDPEARA-----LAEETIDLLERRFW-EDHPGA 158 (384)
T ss_pred HHHHHHHHHHHHHhcCCHHHHH-----HHHHHHHHHHHHhc-cCCCcc
Confidence 5678888889999999998884 47888888888876 434543
No 34
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=37.48 E-value=62 Score=19.68 Aligned_cols=24 Identities=13% Similarity=0.246 Sum_probs=20.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHh
Q 012384 304 WKTALWARLHDQEHAYRMVKRLFN 327 (465)
Q Consensus 304 ~~a~~aArlgd~e~A~~~l~~~~~ 327 (465)
..+.++-.+|+-++|.+++++.++
T Consensus 6 ~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 6 YLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHH
Confidence 357788899999999999999987
No 35
>PF11344 DUF3146: Protein of unknown function (DUF3146); InterPro: IPR021492 This family of proteins with unknown function appear to be restricted to Cyanobacteria.
Probab=36.98 E-value=39 Score=26.14 Aligned_cols=64 Identities=19% Similarity=0.398 Sum_probs=46.0
Q ss_pred cccCceeecceeeecceEEEEEEe--CCeEEEEEEEeCCCCCcccceeeeecC--CeEEEEEccCCcEEEEeecc
Q 012384 385 DKWSSGCVKGLKARGGETVSICWK--DGDLHEVGIYSNYSNNDHDSFKTLHYR--GTSVKVNLSAGKIYTFNRQL 455 (465)
Q Consensus 385 ~~W~~gs~~gL~arG~~~V~~~~~--~g~~~~~~i~s~~~~~~~~~~~~~~~~--~~~~~~~~~~G~~~~i~~~~ 455 (465)
..|..+.+.|-..-|+|.=.+.|. .|+ +.|++.-|+.+- .-|-. ....++.+++|..|.++..+
T Consensus 12 qs~~~g~leGeV~Ag~f~W~F~W~F~~G~---L~V~PslGRALI----~d~L~RFL~k~DY~LEpGgdY~Ftira 79 (80)
T PF11344_consen 12 QSWQQGCLEGEVSAGGFEWQFQWHFRRGE---LSVEPSLGRALI----QDPLGRFLEKSDYQLEPGGDYSFTIRA 79 (80)
T ss_pred eeccCCcEEEEEEccceEEEEEEEEcCCc---EEEccccchHHH----HhHHHHHHhhcceeccCCCceEEEEec
Confidence 568889999988889999999986 454 577777776652 22211 13457889999999987654
No 36
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=36.09 E-value=58 Score=23.37 Aligned_cols=27 Identities=22% Similarity=0.357 Sum_probs=21.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhccCCc
Q 012384 305 KTALWARLHDQEHAYRMVKRLFNLVDPE 332 (465)
Q Consensus 305 ~a~~aArlgd~e~A~~~l~~~~~~~~~~ 332 (465)
+|+-..++|+-++|.+++..+++ .+|+
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~-~eP~ 33 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE-IEPD 33 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH-HTTS
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh-hCCC
Confidence 57778999999999999999998 4553
No 37
>PF09244 DUF1964: Domain of unknown function (DUF1964); InterPro: IPR015325 This domain is C-terminal to the catalytic sucrose phosphorylase beta/alpha barrel domain. It adopts a beta-sandwich fold, with Greek-key topology and is functionally uncharacterised []. ; PDB: 1R7A_B 2GDU_A 2GDV_A.
Probab=35.66 E-value=1.3e+02 Score=22.30 Aligned_cols=57 Identities=14% Similarity=0.135 Sum_probs=30.9
Q ss_pred ceeecceeeecceEEEEEEeCCeEEEEEEEeCCCCCcccceeeeecCCeEEEEEccCCcEEE
Q 012384 389 SGCVKGLKARGGETVSICWKDGDLHEVGIYSNYSNNDHDSFKTLHYRGTSVKVNLSAGKIYT 450 (465)
Q Consensus 389 ~gs~~gL~arG~~~V~~~~~~g~~~~~~i~s~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 450 (465)
+|.|+ .-+-|...|+++|++.. ++++++=+-|+-+- +.|.-+-.++..+=.+|+-.+
T Consensus 3 dG~FS-y~~dgdtSitf~W~g~~-t~atLtFePg~Glg---~~n~~pVatl~W~DsaG~H~T 59 (68)
T PF09244_consen 3 DGEFS-YEADGDTSITFTWTGAT-TSATLTFEPGRGLG---VDNTTPVATLAWTDSAGDHRT 59 (68)
T ss_dssp GSEEE-EEEETTTEEEEEEE-SS--EEEEEE-GGGC-S---TT--S--EEEEEEETTEEEEE
T ss_pred cceee-EecCCCcEEEEEEeccc-cEEEEEEccCcccC---ccCCcceeEEEEeccCCCccc
Confidence 46675 77888899999998765 56666644443333 223332244555556666544
No 38
>PF08695 Coa1: Cytochrome oxidase complex assembly protein 1; InterPro: IPR014807 Coa1 is an inner mitochondrial membrane protein that associates with Shy1 and is required for cytochrome oxidase complex IV assembly. It contains a conserved hydrophobic segment (amino acids 74-92) with the potential to form a membrane-spanning helix. The N terminus of Coa1 is rich in positively charged amino acids and could form an amphipathic alpha helix, characteristic of a mitochondrial presequence. A cleavage site for the mitochondrial processing peptidase is predicted adjacent to the presequence. Upon in vitro import into mitochondria, Coa1 is processed to a mature form, indicating that it possesses a cleavable presequence []. The eukaryotic cytochrome oxidase complex consists of 12-13 subunits, with three mitochondrial encoded subunits, Cox1-Cox3, forming the core enzyme. Translation of the Cox1 transcript requires the two promoters, Pet309 and Mss51, and the latter has an additional role in translational elongation. Coa1 is necessary for linking the activity of Mss51 to Cox1 insertion into the assembly complex [].
Probab=35.04 E-value=1.2e+02 Score=25.15 Aligned_cols=65 Identities=18% Similarity=0.345 Sum_probs=40.9
Q ss_pred eEEeCCCCCccccCceeecceeeecceEEEEEEeC--CeEEEEEEEeCCCCCcccceeeeecCCeEEEEEccCCcEEEE
Q 012384 375 DLYLLPALPWDKWSSGCVKGLKARGGETVSICWKD--GDLHEVGIYSNYSNNDHDSFKTLHYRGTSVKVNLSAGKIYTF 451 (465)
Q Consensus 375 ~i~l~PalP~~~W~~gs~~gL~arG~~~V~~~~~~--g~~~~~~i~s~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~i 451 (465)
-|.+-+.+| |-.|++... .|...+++..++ |+ ..+.+++.+...- .+|.-.++.+.++.|+++.|
T Consensus 48 ~ipi~~~~~---~i~G~~~~~--~g~a~~~~pV~G~k~~-G~v~~~a~r~~~~------~~W~~~~~~v~~~~g~~I~L 114 (116)
T PF08695_consen 48 NIPIKDGWP---WISGSINTS--KGRADLSFPVKGPKGK-GTVYVEATRSGGK------DPWEILRLEVEIDDGQVIDL 114 (116)
T ss_pred CCCcccCcc---cccceeecc--CcEEEEEEEEEcCCCc-EEEEEEEEecCCC------CceEEEEEEEEeCCCCEEeC
Confidence 366667766 678888755 665555555554 33 4566777655442 24544567788888888876
No 39
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=34.02 E-value=82 Score=20.06 Aligned_cols=24 Identities=13% Similarity=0.122 Sum_probs=19.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHh
Q 012384 304 WKTALWARLHDQEHAYRMVKRLFN 327 (465)
Q Consensus 304 ~~a~~aArlgd~e~A~~~l~~~~~ 327 (465)
-++.++.++|+-++|.+++.+.+.
T Consensus 4 ~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 4 NLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 367788999999999999999664
No 40
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=34.02 E-value=1.9e+02 Score=32.05 Aligned_cols=52 Identities=25% Similarity=0.263 Sum_probs=40.0
Q ss_pred CHHHHHHHHHHHHHhcCCHHHHHHhhHHHHHHHHHHHHHhcccCCCCeEEECCCCCC
Q 012384 121 GGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIEGHDGYLETNPSTSP 177 (465)
Q Consensus 121 ~~aw~a~~~w~yy~~TgD~~fL~~~~~p~l~~~A~F~~~~l~~~~~G~y~i~ps~sP 177 (465)
.+|+++..+-+.|+.|||..|.+ +.+++.+|....+...+.|.|..-..-++
T Consensus 274 DnA~l~~~y~~ay~~tgd~~y~~-----~a~~i~~~l~rel~sp~ggFyss~DAD~~ 325 (667)
T COG1331 274 DNALLLRAYAEAYRATGDDLYRR-----AAEGILDYLLRELYSPEGGFYSSLDADSD 325 (667)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHH-----HHHHHHHHHHHHhcCCCCceeecccccCc
Confidence 48999999999999999999885 57899999999887654555544433344
No 41
>PF06627 DUF1153: Protein of unknown function (DUF1153); InterPro: IPR009534 This family consists of several short, hypothetical bacterial proteins of unknown function.; PDB: 2OA4_A 2JRT_A.
Probab=34.00 E-value=43 Score=26.81 Aligned_cols=37 Identities=11% Similarity=0.103 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC
Q 012384 196 TMDMAIIREVFSAIISAAEVLEKNEDALVEKVLKSLPR 233 (465)
Q Consensus 196 t~d~~~v~~~l~~~~~~a~~Lg~~~~~~~~~w~~i~~~ 233 (465)
+-=+..|+..+-..-|+++..+++ +++.+.|++..++
T Consensus 39 AaVV~aV~~Glis~~EA~~rY~Ls-~eEf~~W~~av~r 75 (90)
T PF06627_consen 39 AAVVRAVRGGLISVEEACRRYGLS-EEEFESWQRAVDR 75 (90)
T ss_dssp HHHHHHHHCTTS-HHHHHHCTTSS-HHHHHHHHHHCCT
T ss_pred HHHHHHHHcCCCCHHHHHHHhCCC-HHHHHHHHHHHHH
Confidence 334455666666777899999999 8889999987764
No 42
>PF13041 PPR_2: PPR repeat family
Probab=32.66 E-value=96 Score=21.19 Aligned_cols=23 Identities=13% Similarity=0.183 Sum_probs=19.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh
Q 012384 305 KTALWARLHDQEHAYRMVKRLFN 327 (465)
Q Consensus 305 ~a~~aArlgd~e~A~~~l~~~~~ 327 (465)
..-..++.|+.++|.++|++..+
T Consensus 9 li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 9 LISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHH
Confidence 44467899999999999999887
No 43
>PRK09744 DNA-binding transcriptional regulator DicC; Provisional
Probab=31.08 E-value=23 Score=27.33 Aligned_cols=42 Identities=17% Similarity=0.162 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCCCCccC--CCCcee
Q 012384 204 EVFSAIISAAEVLEKNEDALVEKVLKSLPRLRPTKIA--EDGSIM 246 (465)
Q Consensus 204 ~~l~~~~~~a~~Lg~~~~~~~~~w~~i~~~L~p~~~~--~~G~l~ 246 (465)
.-|....++|..||++ .+-..+|.++...+..+++. ..|.|+
T Consensus 8 ~yFGs~~kvA~aLGIs-~~AVsQWGe~VPe~rA~~ie~~T~G~LK 51 (75)
T PRK09744 8 AFFGSKTKLANAAGVR-LASVAAWGELVPEGRAMRLQEASGGELQ 51 (75)
T ss_pred HHhCcHHHHHHHHCCC-HHHHHHHhccCcHHHHHHHHHHhCCcee
Confidence 3467778999999999 88899999888888877655 346665
No 44
>PF13811 DUF4186: Domain of unknown function (DUF4186)
Probab=30.70 E-value=63 Score=26.97 Aligned_cols=27 Identities=19% Similarity=0.415 Sum_probs=22.5
Q ss_pred cCCHHHHHHhhHH-HHHHHHHHHHHhcc
Q 012384 136 TMDRDFLEKRAYP-LLEGCASFLLDWLI 162 (465)
Q Consensus 136 TgD~~fL~~~~~p-~l~~~A~F~~~~l~ 162 (465)
..|.+|++++|.+ ++..+++|...+|-
T Consensus 21 ~kd~~Y~~~kG~~~I~~Ha~dfi~~RLa 48 (111)
T PF13811_consen 21 AKDRAYIRDKGLDTIREHARDFIAKRLA 48 (111)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHhC
Confidence 4578999999999 66778889888875
No 45
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=30.18 E-value=76 Score=19.02 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=20.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHh
Q 012384 304 WKTALWARLHDQEHAYRMVKRLFN 327 (465)
Q Consensus 304 ~~a~~aArlgd~e~A~~~l~~~~~ 327 (465)
..+.+..++|+.++|.+.|++++.
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH
Confidence 456777889999999999999887
No 46
>PF12857 TOBE_3: TOBE-like domain; InterPro: IPR024765 The TOBE (transport-associated OB) domain [] always occurs as a dimer and it is found in ABC transporters immediately after the ATPase domain. This entry represents a TOBE-like domain, found in the C terminus of ATPase subunit CysA. CysA is part of the CysATWP ABC transporter complex, involved in sulphate/thiosulphate import [, ].
Probab=29.92 E-value=1.3e+02 Score=21.67 Aligned_cols=32 Identities=19% Similarity=0.228 Sum_probs=17.4
Q ss_pred eeecceeeecc-eEEEEEEe-CCeEEEEEEEeCC
Q 012384 390 GCVKGLKARGG-ETVSICWK-DGDLHEVGIYSNY 421 (465)
Q Consensus 390 gs~~gL~arG~-~~V~~~~~-~g~~~~~~i~s~~ 421 (465)
+.+..++.-|. .+|++... +|...+|+|..+.
T Consensus 9 a~V~~v~~~G~~vRlEl~~~~~~~~iEvel~~~~ 42 (58)
T PF12857_consen 9 ARVRRVRPVGPEVRLELKRLDDGEPIEVELPRER 42 (58)
T ss_pred EEEEEEEecCCeEEEEEEECCCCCEEEEEeCHhH
Confidence 45666666666 35555444 4555555555433
No 47
>PLN03005 beta-fructofuranosidase
Probab=29.34 E-value=4.7e+02 Score=28.07 Aligned_cols=142 Identities=14% Similarity=0.049 Sum_probs=77.5
Q ss_pred ccccCCCCccccHHHHHHHHHHHHhHHHHHHHhc-CCCceEEccccC----C-CCCC---CCCCCCcccc-cCc-cCHHH
Q 012384 56 WQSLPCNLSECQEPLFDFLTYLSINGSKTAQVNY-LASGWVIHHKTD----I-WAKS---SADRGKVVWA-LWP-MGGAW 124 (465)
Q Consensus 56 wp~~~~n~~e~~~~l~~~~~~~l~~~r~~A~~~y-G~~G~~~p~~~~----~-~g~~---~~~~~~~~~~-~~~-~~~aw 124 (465)
..+++.+.+|+.+.++.-...+...-++ -+.| .-+| ++|.+-. + -+.. +.++.. .-+ -.| -.+.|
T Consensus 133 LafLl~Ge~eIVrnFl~~~L~Lq~~ek~--~d~~q~g~G-~mPaSfkv~~~p~~~~~~l~aDfG~~-aIGRv~pVDS~LW 208 (550)
T PLN03005 133 LAFLMNGEPDIVKHFLLKTLQLQGWEKR--VDRFKLGEG-VMPASFKVLHDPIRETDNIVADFGES-AIGRVAPVDSGFW 208 (550)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHhhhhhh--hhcccCCCC-CcCceeeecccccCCCcccccccccc-ccccccccchhhH
Confidence 3557799999999988876665442221 1112 2366 5554422 2 1110 000000 000 001 13568
Q ss_pred HHHHHHHHHHhcCCHHHHHHhhHHHHHHHHHHHHHhcccCC-C--CeEEECCCCCCCCCcCCCCCCccccccCchHHHHH
Q 012384 125 LCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIEGH-D--GYLETNPSTSPEHEFIAPDGKLACVSYSSTMDMAI 201 (465)
Q Consensus 125 ~a~~~w~yy~~TgD~~fL~~~~~p~l~~~A~F~~~~l~~~~-~--G~y~i~ps~sPE~~~~~~~G~~~~~~~n~t~d~~~ 201 (465)
-...++.|...|||.+|.+ + |=+..+.+..++.+..+. + ..+ ..|..|- ..+ +.+..---+-+++++
T Consensus 209 WIIllraY~k~tgD~s~~e-~--pevQrgi~lil~lcLa~~Fd~~ptL-lvpDgs~---miD---RrMgv~G~pLeiQaL 278 (550)
T PLN03005 209 WIILLRAYTKSTGDLTLSE-T--PECQKGMKLILSLCLAEGFDTFPTL-LCADGCS---MID---RRMGVYGYPIEIQAL 278 (550)
T ss_pred HHHHHHHHHhhccchhhhh-C--hHHHHHHHHHHHHhcccccCCCceE-eccCCcc---ccc---cccccCCccHHHHHH
Confidence 7888999999999999996 4 777777887777665433 2 222 2222221 010 011122347788888
Q ss_pred HHHHHHHHHH
Q 012384 202 IREVFSAIIS 211 (465)
Q Consensus 202 v~~~l~~~~~ 211 (465)
..+.|+.+.+
T Consensus 279 fy~ALR~~~~ 288 (550)
T PLN03005 279 FFMALRSALS 288 (550)
T ss_pred HHHHHHHHHH
Confidence 8888887765
No 48
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=29.00 E-value=1.2e+02 Score=18.36 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=21.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHh
Q 012384 304 WKTALWARLHDQEHAYRMVKRLFN 327 (465)
Q Consensus 304 ~~a~~aArlgd~e~A~~~l~~~~~ 327 (465)
..+.++..+|+.++|.++|...+.
T Consensus 6 ~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 6 NLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 357788899999999999999887
No 49
>PLN02973 beta-fructofuranosidase
Probab=27.63 E-value=8e+02 Score=26.48 Aligned_cols=141 Identities=13% Similarity=0.034 Sum_probs=74.9
Q ss_pred ccccCCCCccccHHHHHHHHHHHHhHHHHHHHhcCCCceEEccccC----C-CCCCCCCCCCccccc------Cc-cCHH
Q 012384 56 WQSLPCNLSECQEPLFDFLTYLSINGSKTAQVNYLASGWVIHHKTD----I-WAKSSADRGKVVWAL------WP-MGGA 123 (465)
Q Consensus 56 wp~~~~n~~e~~~~l~~~~~~~l~~~r~~A~~~yG~~G~~~p~~~~----~-~g~~~~~~~~~~~~~------~~-~~~a 123 (465)
..+++.+.+|+.+.++.-...+-..-+.-+.- -.-+| ++|.+-. + -+... ....+.. .| -.+.
T Consensus 154 LafLl~Ge~eIVrnFl~~TL~lq~~ektld~~-q~g~G-~mPaSfkv~~~p~~~~e~---l~aDfG~~aIGRV~pVDS~L 228 (571)
T PLN02973 154 LAFLMNGEPDIVKNFLLKTLRLQSWEKKIDRF-QLGEG-VMPASFKVFHDPVRNHET---LIADFGESAIGRVAPVDSGF 228 (571)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhhhhHHHHHhc-ccCCC-CcCceeeecccccCcccc---ccccccccccccccccchhh
Confidence 35567899999998875444433333333332 12366 5554422 2 11100 0011110 01 1256
Q ss_pred HHHHHHHHHHHhcCCHHHHHHhhHHHHHHHHHHHHHhcccCC-C--CeEEECCCCCCCCCcCCCCCCccccccCchHHHH
Q 012384 124 WLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIEGH-D--GYLETNPSTSPEHEFIAPDGKLACVSYSSTMDMA 200 (465)
Q Consensus 124 w~a~~~w~yy~~TgD~~fL~~~~~p~l~~~A~F~~~~l~~~~-~--G~y~i~ps~sPE~~~~~~~G~~~~~~~n~t~d~~ 200 (465)
|-...++.|...|||.+|.+ -|=+..+.+..++.+-.+. + ..+ ..|..|- ..+ ..+..---+-++++
T Consensus 229 WWIIllraY~k~TgD~s~~e---~pevQrgi~lil~lcL~~~Fd~~ptL-lVpDgs~---miD---rrMgv~G~pLeiQa 298 (571)
T PLN02973 229 WWIILLRAYTKSTGDSSLAD---MPECQKGIRLILSLCLSEGFDTFPTL-LCADGCC---MID---RRMGVYGYPIEIQA 298 (571)
T ss_pred HHHHHHHHHHHhccchhhhh---cHHHHHHHHHHHHHhcccccCCCceE-eccCCcc---ccc---cccccCCccHHHHH
Confidence 87888999999999999985 6767777777777543322 2 222 2222211 000 00112224678888
Q ss_pred HHHHHHHHHHH
Q 012384 201 IIREVFSAIIS 211 (465)
Q Consensus 201 ~v~~~l~~~~~ 211 (465)
+..+.|+.+.+
T Consensus 299 Lfy~ALR~a~~ 309 (571)
T PLN02973 299 LFFMALRCALL 309 (571)
T ss_pred HHHHHHHHHHH
Confidence 88888887765
No 50
>PF12854 PPR_1: PPR repeat
Probab=25.98 E-value=1.1e+02 Score=19.36 Aligned_cols=21 Identities=5% Similarity=0.110 Sum_probs=17.5
Q ss_pred HHHHHHHhcCChHHHHHHHHH
Q 012384 304 WKTALWARLHDQEHAYRMVKR 324 (465)
Q Consensus 304 ~~a~~aArlgd~e~A~~~l~~ 324 (465)
.+...+++.|+-++|.++|.+
T Consensus 12 ~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 12 TLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HHHHHHHHCCCHHHHHHHHHh
Confidence 355677999999999999875
No 51
>KOG0602 consensus Neutral trehalase [Carbohydrate transport and metabolism]
Probab=25.70 E-value=71 Score=34.74 Aligned_cols=41 Identities=32% Similarity=0.357 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHhhHHHHHHHHHHHHHhcccCC
Q 012384 124 WLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIEGH 165 (465)
Q Consensus 124 w~a~~~w~yy~~TgD~~fL~~~~~p~l~~~A~F~~~~l~~~~ 165 (465)
.+..++++||+.|+|.+||+ +++|.|..=-+||.+.-..+.
T Consensus 240 llt~Mv~~~y~~t~~~~~~~-~~l~tl~kEy~fw~~~~~~~~ 280 (600)
T KOG0602|consen 240 LLTGMVYEYYEATNDEQFLK-RALPTLIKEYEFWTNNRTEDV 280 (600)
T ss_pred hhhhhHHHhhhccCcHHHHH-HHHHHHhhheecccCCCcccc
Confidence 56778899999999999998 699976666679987755443
No 52
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=24.88 E-value=3.3e+02 Score=21.32 Aligned_cols=54 Identities=11% Similarity=0.227 Sum_probs=28.4
Q ss_pred eeeecceEEEEEEeCCeEEEEEEEeCCCCCcccceeeeecCC------eEEEEEccCCcEEEEeec
Q 012384 395 LKARGGETVSICWKDGDLHEVGIYSNYSNNDHDSFKTLHYRG------TSVKVNLSAGKIYTFNRQ 454 (465)
Q Consensus 395 L~arG~~~V~~~~~~g~~~~~~i~s~~~~~~~~~~~~~~~~~------~~~~~~~~~G~~~~i~~~ 454 (465)
+.-.+.-.|.+....|+--++.|+...|.++ ..|+. ...+..+.+|++++....
T Consensus 8 v~N~s~~~v~l~f~sgq~~D~~v~d~~g~~v------wrwS~~~~FtQal~~~~l~pGe~~~~~~~ 67 (82)
T PF12690_consen 8 VTNNSDEPVTLQFPSGQRYDFVVKDKEGKEV------WRWSDGKMFTQALQEETLEPGESLTYEET 67 (82)
T ss_dssp EEE-SSS-EEEEESSS--EEEEEE-TT--EE------EETTTT-------EEEEE-TT-EEEEEEE
T ss_pred EEeCCCCeEEEEeCCCCEEEEEEECCCCCEE------EEecCCchhhheeeEEEECCCCEEEEEEE
Confidence 4445555677777777777777775555543 34543 346788889988888653
No 53
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=24.29 E-value=1.7e+02 Score=17.55 Aligned_cols=23 Identities=13% Similarity=0.158 Sum_probs=18.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh
Q 012384 305 KTALWARLHDQEHAYRMVKRLFN 327 (465)
Q Consensus 305 ~a~~aArlgd~e~A~~~l~~~~~ 327 (465)
..-.+++.|+.+.|.+.+....+
T Consensus 7 ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 7 LLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 44467889999999999988776
No 54
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=23.30 E-value=2.2e+02 Score=29.10 Aligned_cols=40 Identities=10% Similarity=-0.065 Sum_probs=29.3
Q ss_pred CCeEEeCCCCCccccC--ceeecceeeecceEEE-EEEeCCeEE
Q 012384 373 LNDLYLLPALPWDKWS--SGCVKGLKARGGETVS-ICWKDGDLH 413 (465)
Q Consensus 373 ~g~i~l~PalP~~~W~--~gs~~gL~arG~~~V~-~~~~~g~~~ 413 (465)
.|+++|+++|| .+-. +.+|-+.-..|-..|+ .+|-||+..
T Consensus 55 TGKfhv~~~WP-~~v~~P~~sFlN~g~PGPv~vR~~t~lng~~~ 97 (399)
T TIGR03079 55 TGKFHLAEDWP-RAVEKPHVSFFNVGSPSPVFVRLSTKVNGMPV 97 (399)
T ss_pred EEEEEEcccCc-hhcCCCceEEEecCCCCCeEEEeeEEECCEee
Confidence 58999999999 7654 3577677777776665 557788753
No 55
>PF12518 DUF3721: Protein of unknown function; InterPro: IPR022196 This domain family is found in bacteria and eukaryotes, and is approximately 30 amino acids in length. There is a conserved WMPC sequence motif. There are two completely conserved residues (A and C) that may be functionally important.
Probab=22.77 E-value=64 Score=21.03 Aligned_cols=16 Identities=19% Similarity=0.065 Sum_probs=13.4
Q ss_pred HhHHHHHHHhcCCCceE
Q 012384 79 INGSKTAQVNYLASGWV 95 (465)
Q Consensus 79 ~~~r~~A~~~yG~~G~~ 95 (465)
..|.+.|++ +||.|+-
T Consensus 5 ~eAe~~A~~-~GC~G~H 20 (34)
T PF12518_consen 5 AEAEKRAKE-LGCKGAH 20 (34)
T ss_pred HHHHHHHHH-cCCcchh
Confidence 568889999 7999984
No 56
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=21.63 E-value=5.9e+02 Score=25.52 Aligned_cols=44 Identities=16% Similarity=0.067 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHhhHHHHHHHHHHHHHhcccCC-CCeEE
Q 012384 122 GAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIEGH-DGYLE 170 (465)
Q Consensus 122 ~aw~a~~~w~yy~~TgD~~fL~~~~~p~l~~~A~F~~~~l~~~~-~G~y~ 170 (465)
.+-+.+.+-.+|+.++|+++|. ..+.+++|+..++...+ .|.+.
T Consensus 55 ~ar~i~~~a~a~~~~~~~~~l~-----~A~~~~~fl~~~~~d~~~Gg~~~ 99 (384)
T cd00249 55 QARQVYCFAVAYLLGWRPEWLE-----AAEHGLEYLDRHGRDPDHGGWYF 99 (384)
T ss_pred ecHHHHHHHHHHHhcCChhHHH-----HHHHHHHHHHHhCcCCCCCCEEE
Confidence 4577778888999999988763 57999999999876433 34443
No 57
>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.
Probab=21.54 E-value=2.3e+02 Score=23.00 Aligned_cols=47 Identities=11% Similarity=-0.022 Sum_probs=20.1
Q ss_pred CCeEEEEEEEeCCCCCcccceeeeecCCeEEEEEccCCcEEEEeecccccc
Q 012384 409 DGDLHEVGIYSNYSNNDHDSFKTLHYRGTSVKVNLSAGKIYTFNRQLKCTN 459 (465)
Q Consensus 409 ~g~~~~~~i~s~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~i~~~~~~~~ 459 (465)
+|+++.+.+....|.+-+|= |-.| +..+|.|.+-|.-+|....-.+|
T Consensus 9 dGkV~S~~~~~~dG~~~TlG-Vm~p---GeY~F~T~~~E~M~vvsG~l~V~ 55 (94)
T PF06865_consen 9 DGKVKSITFEFADGSKKTLG-VMLP---GEYTFGTSAPERMEVVSGELEVK 55 (94)
T ss_dssp CCTEEEEEEEETTSEEEEEE-EE-S---ECEEEEESS-EEEEEEESEEEEE
T ss_pred CCeEEEEEEEcCCCCcceEE-EEee---eEEEEcCCCCEEEEEEEeEEEEE
Confidence 45555555555554444411 1112 23455555555555544433333
No 58
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=21.07 E-value=2.7e+02 Score=19.73 Aligned_cols=30 Identities=7% Similarity=-0.067 Sum_probs=23.7
Q ss_pred CChHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 012384 298 PGWSITWKTALWARLHDQEHAYRMVKRLFN 327 (465)
Q Consensus 298 ~gws~~~~a~~aArlgd~e~A~~~l~~~~~ 327 (465)
.......++.+..+.|+.++|..++++.+.
T Consensus 30 ~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 30 NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555578888999999999999999887
No 59
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=20.14 E-value=3.7e+02 Score=27.52 Aligned_cols=40 Identities=10% Similarity=0.148 Sum_probs=26.0
Q ss_pred CCeEEeCCCCCccccC--ceeecceeeecc-eEEEEEEeCCeEE
Q 012384 373 LNDLYLLPALPWDKWS--SGCVKGLKARGG-ETVSICWKDGDLH 413 (465)
Q Consensus 373 ~g~i~l~PalP~~~W~--~gs~~gL~arG~-~~V~~~~~~g~~~ 413 (465)
.|++++++.|| .+-. +.+|=++-..|- |....+|-+|+.+
T Consensus 35 TGK~~v~~~WP-~~v~~P~~~FLnv~~PGPv~vr~e~~ing~~~ 77 (381)
T PF04744_consen 35 TGKFHVFEDWP-EAVAKPEVAFLNVGEPGPVFVRKERWINGQPV 77 (381)
T ss_dssp EEEEEE-TT---TTS--TTSEEEEEESSSSSEEEEEEEETTEE-
T ss_pred EEEEEEcccCh-hhcCCCceEEEecCCCCCeeeeeeeeecCccc
Confidence 48999999999 7654 357777888887 4445678888865
Done!