BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012385
(465 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q57883|Y441_METJA UPF0721 transmembrane protein MJ0441 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0441 PE=3 SV=1
Length = 267
Score = 40.4 bits (93), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Query: 331 LMALLAGILGGLFGIGGGMLISPLL------LQIGTAPEVTAATCSFMVFFSSTMSAFQY 384
++ + GILG LFGIGGG L++P+L I + T F+VF +S +S F++
Sbjct: 18 IVGFIVGILGSLFGIGGGFLVAPILTFIFDYFGIPDGVKFAVGTSLFVVFINSIISIFRH 77
>sp|P44054|Y806_HAEIN UPF0721 transmembrane protein HI_0806 OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_0806
PE=3 SV=1
Length = 268
Score = 37.4 bits (85), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 9/110 (8%)
Query: 79 ISSAGGIGGGGLYIPILTI---SAGLELRTATSFSAFMVTGGSIANVMCNMLGTIGGKSF 135
+S+ GIGGG L +PIL +++ +ATS + M T + N+L K
Sbjct: 19 VSAIFGIGGGVLMVPILRTLFPELPIQVISATSLTIVMCTA------LINLLFFHKQKIK 72
Query: 136 IDYDIALLSEPCMLLGVSIGVICNLVFPEWLVTVLFAILLAWSTFKTCTN 185
IDY +L M++GV IG + F +++++F + L+ KT N
Sbjct: 73 IDYINMILWSIAMVIGVQIGFELSFYFSTAIISLIFTVSLSALAIKTFLN 122
>sp|O34578|YJNA_BACSU UPF0721 transmembrane protein YjnA OS=Bacillus subtilis (strain
168) GN=yjnA PE=3 SV=1
Length = 254
Score = 35.0 bits (79), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 331 LMALLAGILGGLFGIGGGMLISPLLLQIGTAPEVTAAT 368
LM L G L GL G+GG L++PLL+ +G P + T
Sbjct: 7 LMGLFVGALVGLTGVGGAALLTPLLIVLGINPSIAVGT 44
>sp|P54437|YRKJ_BACSU UPF0721 transmembrane protein YrkJ OS=Bacillus subtilis (strain
168) GN=yrkJ PE=3 SV=1
Length = 261
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 9/121 (7%)
Query: 301 RKESTQYHAPNQQGIGDLTRRGTSNKLIFPLMALLAGILGGLFGIGGGMLISPLLLQIGT 360
+ + Q H+ +++ I NK + +A + G + G+ G GG ++ P++L I
Sbjct: 128 KGQKGQEHSEDKEVI--------FNKWLASSLAFIIGGVSGILGAGGAFILVPIMLSILN 179
Query: 361 AP-EVTAATCSFMVFFSSTMSAFQYLLLGMEQSGTALIFAIVCFVASLLGLLVVQKAIQE 419
P VT A+ + F SS + ++ G AL+ I +AS +G V QK +
Sbjct: 180 IPVRVTVASSLAITFLSSIGATVGKVITGQVLFVPALVLMITSLIASPIGASVGQKVNTK 239
Query: 420 F 420
F
Sbjct: 240 F 240
>sp|P44070|Y902_HAEIN UPF0721 transmembrane protein HI_0902 OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_0902
PE=3 SV=1
Length = 264
Score = 33.5 bits (75), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Query: 331 LMALLAGILGGLFGIGGGMLISP---LLLQIGTAPE 363
L+ LAG L GLFGIGGG++I P LL I PE
Sbjct: 10 LVGALAGFLAGLFGIGGGLVIVPTLVYLLPIVDVPE 45
>sp|Q8U9I9|PGK_AGRT5 Phosphoglycerate kinase OS=Agrobacterium tumefaciens (strain C58 /
ATCC 33970) GN=pgk PE=3 SV=2
Length = 400
Score = 32.7 bits (73), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 113 MVTGGSIANVMCNMLGTIGGKSFIDYDIALLSEPCMLLGVSIGVICNLVFPE 164
+V GG +AN GT GKS ++D+A ++ M+ + G C +V PE
Sbjct: 217 LVIGGGMANTFLAARGTNVGKSLCEHDLAETAKQIMIEAATSG--CAIVLPE 266
>sp|Q1MC31|PGK_RHIL3 Phosphoglycerate kinase OS=Rhizobium leguminosarum bv. viciae
(strain 3841) GN=pgk PE=3 SV=1
Length = 401
Score = 32.3 bits (72), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 113 MVTGGSIANVMCNMLGTIGGKSFIDYDIALLSEPCMLLGVSIGVICNLVFPE 164
+V GG +AN GT GKS ++D+A ++ M+ + G C ++ PE
Sbjct: 217 LVIGGGMANTFIAARGTNVGKSLCEHDLAETAKQIMIEAATAG--CAIILPE 266
>sp|B5ZPA0|PGK_RHILW Phosphoglycerate kinase OS=Rhizobium leguminosarum bv. trifolii
(strain WSM2304) GN=pgk PE=3 SV=1
Length = 400
Score = 32.0 bits (71), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 113 MVTGGSIANVMCNMLGTIGGKSFIDYDIALLSEPCMLLGVSIGVICNLVFPE 164
+V GG +AN GT GKS ++D+A + M+ + G C ++ PE
Sbjct: 217 LVIGGGMANTFIAARGTNVGKSLCEHDLAETARQIMIEAATSG--CAIILPE 266
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.138 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 159,855,560
Number of Sequences: 539616
Number of extensions: 6428877
Number of successful extensions: 21923
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 21886
Number of HSP's gapped (non-prelim): 84
length of query: 465
length of database: 191,569,459
effective HSP length: 121
effective length of query: 344
effective length of database: 126,275,923
effective search space: 43438917512
effective search space used: 43438917512
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 63 (28.9 bits)