Query 012385
Match_columns 465
No_of_seqs 274 out of 1871
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 02:05:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012385.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012385hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10621 hypothetical protein; 100.0 8.2E-29 1.8E-33 244.4 30.8 242 64-443 10-252 (266)
2 COG0730 Predicted permeases [G 100.0 5.7E-28 1.2E-32 237.3 31.5 236 65-429 6-243 (258)
3 PF01925 TauE: Sulfite exporte 100.0 1.5E-26 3.2E-31 224.1 24.5 228 70-430 2-234 (240)
4 PRK10621 hypothetical protein; 99.3 8.1E-11 1.8E-15 116.3 18.1 114 69-187 142-255 (266)
5 COG0730 Predicted permeases [G 99.2 1.5E-10 3.2E-15 113.8 15.1 104 326-429 7-110 (258)
6 PF01925 TauE: Sulfite exporte 99.1 1.8E-09 3.9E-14 104.5 14.4 108 70-182 129-240 (240)
7 PF02673 BacA: Bacitracin resi 94.9 4.3 9.2E-05 40.1 21.8 88 343-430 160-253 (259)
8 PF04018 DUF368: Domain of unk 93.2 9.4 0.0002 37.7 25.7 86 324-429 140-225 (257)
9 PRK11469 hypothetical protein; 87.3 26 0.00056 32.9 20.6 42 145-187 48-89 (188)
10 TIGR02840 spore_YtaF putative 84.7 37 0.0008 32.3 18.5 52 136-187 28-83 (206)
11 PRK00281 undecaprenyl pyrophos 78.9 72 0.0016 31.7 23.0 87 343-429 164-255 (268)
12 COG2119 Predicted membrane pro 77.5 63 0.0014 30.3 16.3 52 134-185 34-85 (190)
13 PF09605 Trep_Strep: Hypotheti 67.0 75 0.0016 29.7 10.9 32 391-422 154-185 (186)
14 COG3619 Predicted membrane pro 61.1 1E+02 0.0022 29.8 10.8 46 123-169 157-202 (226)
15 PTZ00370 STEVOR; Provisional 60.0 63 0.0014 32.3 9.2 46 150-195 243-291 (296)
16 PF04066 MrpF_PhaF: Multiple r 57.8 62 0.0013 23.9 6.8 54 362-415 2-55 (55)
17 COG2119 Predicted membrane pro 52.6 46 0.001 31.2 6.5 51 135-185 134-184 (190)
18 PF01169 UPF0016: Uncharacteri 51.4 42 0.00092 26.8 5.4 42 136-177 35-76 (78)
19 COG4280 Predicted membrane pro 48.5 1.1E+02 0.0024 29.1 8.3 32 160-191 59-90 (236)
20 PF11368 DUF3169: Protein of u 46.8 2.8E+02 0.0061 26.9 13.4 27 136-162 7-33 (248)
21 PF05232 BTP: Bacterial Transm 43.5 72 0.0016 24.7 5.4 41 86-126 16-56 (67)
22 PRK12554 undecaprenyl pyrophos 43.0 3.5E+02 0.0077 27.0 18.5 86 344-429 167-258 (276)
23 PRK10263 DNA translocase FtsK; 41.9 3.9E+02 0.0085 32.6 13.3 21 144-164 140-160 (1355)
24 COG1283 NptA Na+/phosphate sym 40.5 5.3E+02 0.012 28.3 20.2 41 383-423 200-240 (533)
25 PF11833 DUF3353: Protein of u 39.8 1.8E+02 0.0038 27.5 8.5 47 133-179 135-190 (194)
26 COG1968 BacA Undecaprenyl pyro 38.6 4.1E+02 0.009 26.5 22.6 77 353-429 175-256 (270)
27 PRK09548 PTS system ascorbate- 37.3 1E+02 0.0022 34.2 7.3 15 133-147 422-436 (602)
28 PF09489 CbtB: Probable cobalt 35.9 1.1E+02 0.0023 22.9 5.0 29 435-465 23-53 (54)
29 PHA02650 hypothetical protein; 34.5 1.8E+02 0.0039 23.4 6.3 43 259-301 29-71 (81)
30 PRK12600 putative monovalent c 34.0 2.4E+02 0.0053 23.4 7.5 56 360-415 29-84 (94)
31 TIGR02459 CbtB cobalt transpor 33.9 81 0.0018 24.0 4.1 17 447-465 41-59 (60)
32 KOG2881 Predicted membrane pro 33.7 2.1E+02 0.0047 28.4 8.1 50 142-191 107-156 (294)
33 COG1971 Predicted membrane pro 33.6 4.1E+02 0.009 25.0 20.4 52 137-188 36-90 (190)
34 TIGR00892 2A0113 monocarboxyla 33.0 2.1E+02 0.0046 30.0 8.9 18 145-162 379-396 (455)
35 TIGR00801 ncs2 uracil-xanthine 32.5 6.1E+02 0.013 26.6 12.9 39 348-387 21-61 (415)
36 PRK01844 hypothetical protein; 32.2 1.3E+02 0.0027 23.8 5.1 27 397-423 9-35 (72)
37 PRK06161 putative monovalent c 32.2 2.5E+02 0.0054 23.0 7.2 59 357-415 25-84 (89)
38 PRK12599 putative monovalent c 31.9 2.9E+02 0.0062 22.8 7.5 59 357-415 27-86 (91)
39 PF05977 MFS_3: Transmembrane 30.7 6.4E+02 0.014 27.5 12.3 43 143-185 351-393 (524)
40 COG4300 CadD Predicted permeas 30.6 2E+02 0.0043 27.0 6.9 53 133-185 34-87 (205)
41 PF02652 Lactate_perm: L-lacta 29.1 3.5E+02 0.0075 29.7 9.7 48 66-114 101-149 (522)
42 PRK00523 hypothetical protein; 29.0 1.5E+02 0.0033 23.4 5.0 26 397-422 10-35 (72)
43 COG3180 AbrB Putative ammonia 28.8 4.9E+02 0.011 27.0 10.1 99 324-444 9-107 (352)
44 PRK12612 putative monovalent c 28.7 3.2E+02 0.0069 22.2 7.3 56 360-415 29-84 (87)
45 TIGR02185 Trep_Strep conserved 28.2 4.9E+02 0.011 24.2 13.4 31 392-422 158-188 (189)
46 PF12273 RCR: Chitin synthesis 27.8 43 0.00093 29.2 2.1 12 281-292 2-13 (130)
47 PRK12604 putative monovalent c 27.6 3.3E+02 0.0072 22.0 7.4 55 360-414 27-81 (84)
48 TIGR02230 ATPase_gene1 F0F1-AT 27.3 1.6E+02 0.0036 24.7 5.4 25 141-165 49-73 (100)
49 PF01169 UPF0016: Uncharacteri 27.1 2.4E+02 0.0052 22.4 6.1 34 394-427 39-72 (78)
50 PF02652 Lactate_perm: L-lacta 26.8 8.7E+02 0.019 26.6 14.7 47 328-374 103-150 (522)
51 COG1784 Predicted membrane pro 26.6 7.6E+02 0.016 25.9 16.8 127 323-450 215-363 (395)
52 PF03596 Cad: Cadmium resistan 26.0 3.4E+02 0.0073 25.6 7.8 43 143-185 33-76 (191)
53 PRK12657 putative monovalent c 25.6 4E+02 0.0086 22.4 7.4 56 360-415 33-88 (100)
54 PRK08381 putative monovalent c 25.3 3.8E+02 0.0082 21.9 7.4 55 360-414 30-84 (87)
55 TIGR01478 STEVOR variant surfa 25.3 1E+02 0.0023 30.8 4.4 43 151-193 248-293 (295)
56 PF09527 ATPase_gene1: Putativ 23.8 2.9E+02 0.0063 20.0 6.8 46 140-185 6-52 (55)
57 PF05052 MerE: MerE protein; 23.1 2.6E+02 0.0056 22.1 5.3 34 145-181 35-68 (75)
58 PRK06814 acylglycerophosphoeth 22.9 1.3E+03 0.028 27.3 23.8 32 133-164 142-173 (1140)
59 PF07172 GRP: Glycine rich pro 22.6 65 0.0014 26.8 2.1 19 6-25 3-21 (95)
60 PRK00968 tetrahydromethanopter 22.2 4.1E+02 0.009 25.6 7.5 25 73-97 141-166 (240)
61 PF13829 DUF4191: Domain of un 22.0 2.7E+02 0.0059 27.0 6.5 57 235-304 22-78 (224)
62 TIGR00753 undec_PP_bacA undeca 21.7 7.8E+02 0.017 24.2 18.2 48 137-184 77-126 (255)
63 PF13491 DUF4117: Domain of un 21.6 5.8E+02 0.013 22.7 12.3 34 143-176 119-152 (171)
64 KOG0569 Permease of the major 21.5 2.3E+02 0.0051 30.7 6.6 60 397-457 64-123 (485)
65 PF11085 YqhR: Conserved membr 21.1 6.7E+02 0.015 23.3 8.7 102 328-429 22-142 (173)
66 PF03613 EIID-AGA: PTS system 20.8 1.6E+02 0.0035 29.1 4.9 40 287-345 224-263 (264)
67 PF09835 DUF2062: Uncharacteri 20.6 5.9E+02 0.013 22.4 13.3 48 66-116 22-69 (154)
No 1
>PRK10621 hypothetical protein; Provisional
Probab=99.97 E-value=8.2e-29 Score=244.41 Aligned_cols=242 Identities=18% Similarity=0.220 Sum_probs=205.2
Q ss_pred HHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccHHHHHH
Q 012385 64 ARSAIAGVFCFIAASISSAGGIGGGGLYIPILTISAGLELRTATSFSAFMVTGGSIANVMCNMLGTIGGKSFIDYDIALL 143 (465)
Q Consensus 64 ~~~v~~~~~g~lag~is~~~GiGGG~i~vPiL~~~~gl~~~~A~~ts~~~i~~~s~~~~~~~~~p~~~~~~~Id~~~~~~ 143 (465)
+..+..+++++++|+++++.| |||.+.+|++.. +|+|+++|++||.+.++.+++++.+.|.| ++++||+...+
T Consensus 10 ~~~~~l~~~g~~aG~l~gl~G-GGg~i~vP~L~~-~g~~~~~Av~tsl~~~~~~~~~~~~~~~~-----~~~v~~~~~~~ 82 (266)
T PRK10621 10 LLLGVLFFVAMLAGFIDSIAG-GGGLLTIPALLA-AGMSPAQALATNKLQACGGSFSASLYFIR-----RKVVNLADQKL 82 (266)
T ss_pred HHHHHHHHHHHHHHHHhhhcc-ccHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCCHHHHHH
Confidence 344667778999999999999 999999999974 79999999999999999999999998887 89999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhhhhcccCCccccCccccCCCCCCCCcc
Q 012385 144 SEPCMLLGVSIGVICNLVFPEWLVTVLFAILLAWSTFKTCTNGFSFWKLESENLKRDHTCGKIENGIVKDENCDGSEGVK 223 (465)
Q Consensus 144 l~~~~llGa~iGa~l~~~lp~~~l~~l~~~~Ll~~~~~~~~~~~~~~k~e~~~~~~~~~~~~~e~~~~~d~~~~~n~~~~ 223 (465)
+.+++++|+.+|+++..++|++.++.+++++++..+.+++.+. ++++ + +.
T Consensus 83 l~~~~l~Ga~~G~~l~~~l~~~~l~~~~~~~ll~~~~~~l~~~----~~~~-----~-------------~~-------- 132 (266)
T PRK10621 83 NIAMTFVGSMSGALLVQYVQADILRQILPILVIGIGLYFLLMP----KLGE-----E-------------DR-------- 132 (266)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC----cccc-----c-------------cc--------
Confidence 9999999999999999999999999999999999888876541 0000 0 00
Q ss_pred ccccccccccccccCCCChhhHHHHHHHHHHHHHHHHhcCCCCCCCcccccccChhHHHHHHHhHHHHHHHHHHHHHHhh
Q 012385 224 SYEEPLLSVDESNQLSFPWMKLGVLVLVWFCFSVLYLFRGNRDGQGIITMKPCGVGYWILSSLQIPLAIAFTAWILCRKE 303 (465)
Q Consensus 224 ~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ll~g~~~~~s~i~i~~c~~~Yw~~~~~~~~~~~~~~~~~~~~~~ 303 (465)
++ +.
T Consensus 133 -----------~~--~~--------------------------------------------------------------- 136 (266)
T PRK10621 133 -----------QR--RL--------------------------------------------------------------- 136 (266)
T ss_pred -----------cc--cc---------------------------------------------------------------
Confidence 00 00
Q ss_pred hccccCCCCCCcCcccccCCchhHHHHHHHHHHHHHhhhcccchhhhHHHHHH-HcCCchHHHHHhHHHHHHHHHHHHHH
Q 012385 304 STQYHAPNQQGIGDLTRRGTSNKLIFPLMALLAGILGGLFGIGGGMLISPLLL-QIGTAPEVTAATCSFMVFFSSTMSAF 382 (465)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~aG~~sGl~GIGGG~i~~P~Ll-~~g~~~~~A~aTs~~~~~~~s~~s~~ 382 (465)
.+.......|+++|+++|++|+|||.+++|.++ ..++|++++++|+.++.+.++..+..
T Consensus 137 --------------------~~~~~~~~~G~~~G~lsG~~G~GgG~~~v~~l~~~~~~~~~~a~~ts~~~~~~~~~~~~~ 196 (266)
T PRK10621 137 --------------------YGLPFALIAGGCVGFYDGFFGPGAGSFYALAFVTLCGFNLAKATAHAKVLNATSNIGGLL 196 (266)
T ss_pred --------------------cchHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 000112457899999999999999999998774 78999999999999999999999999
Q ss_pred HHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012385 383 QYLLLGMEQSGTALIFAIVCFVASLLGLLVVQKAIQEFGRASLIVFSVSIVMALSTVLITS 443 (465)
Q Consensus 383 ~~~~~G~i~~~~~~~l~~g~~lGa~iGa~l~~~i~~~~~r~~~iv~ll~~~l~~s~v~~~~ 443 (465)
.|...|.+||..++.+.+++++|+++|+++.+|++++..|+.+..++ .++++.|..
T Consensus 197 ~~~~~G~v~~~~~l~l~~g~~~G~~lG~~l~~~~~~~~lr~~~~~ll-----~~~~i~~~~ 252 (266)
T PRK10621 197 LFILGGKVIWATGFVMLVGQFLGARLGARLVLSKGQKLIRPMIVIVS-----AVMSAKLLY 252 (266)
T ss_pred HHHhCCeehHHHHHHHHHHHHHHHHHHHHHHHHcCchHhHHHHHHHH-----HHHHHHHHH
Confidence 99999999999999999999999999999999999999999976665 444555544
No 2
>COG0730 Predicted permeases [General function prediction only]
Probab=99.97 E-value=5.7e-28 Score=237.26 Aligned_cols=236 Identities=25% Similarity=0.348 Sum_probs=205.4
Q ss_pred HHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccHHHHHHH
Q 012385 65 RSAIAGVFCFIAASISSAGGIGGGGLYIPILTISAGLELRTATSFSAFMVTGGSIANVMCNMLGTIGGKSFIDYDIALLS 144 (465)
Q Consensus 65 ~~v~~~~~g~lag~is~~~GiGGG~i~vPiL~~~~gl~~~~A~~ts~~~i~~~s~~~~~~~~~p~~~~~~~Id~~~~~~l 144 (465)
..++.+++|+++|+++++.|+|||.+.+|.+.. +++|++.|.++++..+..++..+++.|.| ++++||+.+..+
T Consensus 6 ~~~~~~~~g~l~g~i~g~~G~Ggg~i~~P~L~~-~~~~~~~a~~t~l~~~~~~~~~~~~~~~k-----~~~v~~~~~~~l 79 (258)
T COG0730 6 TLLLLFLVGLLAGFISGLAGGGGGLLTVPALLL-LGLPPAAALGTSLLAVLFTSLSSALAYLK-----RGNVDWKLALIL 79 (258)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCccHHHHHHH
Confidence 356678899999999999999999999999998 55999999999999999999999999998 899999999999
Q ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhhhhcccCCccccCccccCCCCCCCCccc
Q 012385 145 EPCMLLGVSIGVICNLVFPEWLVTVLFAILLAWSTFKTCTNGFSFWKLESENLKRDHTCGKIENGIVKDENCDGSEGVKS 224 (465)
Q Consensus 145 ~~~~llGa~iGa~l~~~lp~~~l~~l~~~~Ll~~~~~~~~~~~~~~k~e~~~~~~~~~~~~~e~~~~~d~~~~~n~~~~~ 224 (465)
.+++++|+.+|+++..++|++.++..+++++++.+++++++..+ ++ +++ +
T Consensus 80 ~~~~~~G~~lG~~l~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~----~~---~~~-------------~---------- 129 (258)
T COG0730 80 LLGALIGAFLGALLALLLPAELLKLLFGLLLLLLALYMLLGPRL----AK---AED-------------R---------- 129 (258)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhccc----cc---ccc-------------c----------
Confidence 99999999999999999999999999999999999999887221 00 000 0
Q ss_pred cccccccccccccCCCChhhHHHHHHHHHHHHHHHHhcCCCCCCCcccccccChhHHHHHHHhHHHHHHHHHHHHHHhhh
Q 012385 225 YEEPLLSVDESNQLSFPWMKLGVLVLVWFCFSVLYLFRGNRDGQGIITMKPCGVGYWILSSLQIPLAIAFTAWILCRKES 304 (465)
Q Consensus 225 ~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ll~g~~~~~s~i~i~~c~~~Yw~~~~~~~~~~~~~~~~~~~~~~~ 304 (465)
+++..|
T Consensus 130 -----------~~~~~~--------------------------------------------------------------- 135 (258)
T COG0730 130 -----------AARLRP--------------------------------------------------------------- 135 (258)
T ss_pred -----------ccccCc---------------------------------------------------------------
Confidence 000011
Q ss_pred ccccCCCCCCcCcccccCCchhHHHHHHHHHHHHHhhhcccchhhhHHHHHH-HcCCchHHHHHhHHHHHHHHHHHHHHH
Q 012385 305 TQYHAPNQQGIGDLTRRGTSNKLIFPLMALLAGILGGLFGIGGGMLISPLLL-QIGTAPEVTAATCSFMVFFSSTMSAFQ 383 (465)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~aG~~sGl~GIGGG~i~~P~Ll-~~g~~~~~A~aTs~~~~~~~s~~s~~~ 383 (465)
+........|+.+|+++|++|+|||...+|.+. ..+.|.+.+++|+.+.+++++..+...
T Consensus 136 -------------------~~~~~~~~~g~~~G~~sG~~G~GgG~~~vp~l~~~~~~~~~~~~~ts~~~~~~~~~~~~~~ 196 (258)
T COG0730 136 -------------------LLFALALLIGFLAGFLSGLFGVGGGFGIVPALLLLLLLPLKLAVATSLAIILNTASNGAAL 196 (258)
T ss_pred -------------------chhHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHH
Confidence 111234567899999999999999999999995 678999999999999999999999999
Q ss_pred HHH-cCCccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 012385 384 YLL-LGMEQSGTALIFAIVCFVASLLGLLVVQKAIQEFGRASLIVFS 429 (465)
Q Consensus 384 ~~~-~G~i~~~~~~~l~~g~~lGa~iGa~l~~~i~~~~~r~~~iv~l 429 (465)
|.. .|++||..+..+.+++++|+++|+++.+|++++..|+.+..++
T Consensus 197 ~~~~~g~~~~~~~~~l~~g~~~G~~lG~~l~~~~~~~~lr~~~~~~~ 243 (258)
T COG0730 197 YLFALGAVDWPLALLLAVGSILGAYLGARLARRLSPKVLRRLFALVL 243 (258)
T ss_pred HHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999 7999999988999999999999999999999999999976555
No 3
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised.; GO: 0016021 integral to membrane
Probab=99.95 E-value=1.5e-26 Score=224.07 Aligned_cols=228 Identities=29% Similarity=0.440 Sum_probs=196.5
Q ss_pred HHHHHHHHHHhhccccchhhhHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccHHHHHHHHHHHH
Q 012385 70 GVFCFIAASISSAGGIGGGGLYIPILTISAGLELRTATSFSAFMVTGGSIANVMCNMLGTIGGKSFIDYDIALLSEPCML 149 (465)
Q Consensus 70 ~~~g~lag~is~~~GiGGG~i~vPiL~~~~gl~~~~A~~ts~~~i~~~s~~~~~~~~~p~~~~~~~Id~~~~~~l~~~~l 149 (465)
+++++++|++.+..|+|||.+.+|++.. + +|+++|++++.+....++..+++.|.| ++++||+...++.++++
T Consensus 2 ~~~~~~ag~v~g~~G~g~g~i~~p~l~~-~-l~~~~a~~~~~~~~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~~~ 74 (240)
T PF01925_consen 2 LLIGFLAGFVSGITGFGGGLIAVPILIL-F-LPPKQAVATSLFINLFTSLIAALRHRK-----HGNIDWKIVLPLIIGAL 74 (240)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHH-H-cCHHHHHHHHHHHHHHHHHHHHHHHHH-----ccccchhhhhhhhhHhH
Confidence 4688999999999999999999999998 5 899999999999999999999999876 78899999999999999
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhhhhcccCCccccCccccCCCCCCCCcccccccc
Q 012385 150 LGVSIGVICNLVFPEWLVTVLFAILLAWSTFKTCTNGFSFWKLESENLKRDHTCGKIENGIVKDENCDGSEGVKSYEEPL 229 (465)
Q Consensus 150 lGa~iGa~l~~~lp~~~l~~l~~~~Ll~~~~~~~~~~~~~~k~e~~~~~~~~~~~~~e~~~~~d~~~~~n~~~~~~~~~~ 229 (465)
+|+.+|+++...+|++.++.+++++++..+.+++.+..+ ++. |+
T Consensus 75 ~g~~iG~~l~~~l~~~~l~~~~~~~ll~~~~~~~~~~~~---~~~------------------~~--------------- 118 (240)
T PF01925_consen 75 IGVVIGAWLLSLLPDDILKLIFGLFLLLLAIYMLLKKRR---KTP------------------KS--------------- 118 (240)
T ss_pred HHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHhcccc---ccc------------------cc---------------
Confidence 999999999999999999999999999999988775110 000 00
Q ss_pred ccccccccCCCChhhHHHHHHHHHHHHHHHHhcCCCCCCCcccccccChhHHHHHHHhHHHHHHHHHHHHHHhhhccccC
Q 012385 230 LSVDESNQLSFPWMKLGVLVLVWFCFSVLYLFRGNRDGQGIITMKPCGVGYWILSSLQIPLAIAFTAWILCRKESTQYHA 309 (465)
Q Consensus 230 l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ll~g~~~~~s~i~i~~c~~~Yw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (465)
+ +.+
T Consensus 119 ----~----~~~-------------------------------------------------------------------- 122 (240)
T PF01925_consen 119 ----R----SSP-------------------------------------------------------------------- 122 (240)
T ss_pred ----c----ccc--------------------------------------------------------------------
Confidence 0 000
Q ss_pred CCCCCcCcccccCCchhHHHHHHHHH-HHHHhhhcccchhhhHHHHHH-HcCCchHHHHHhHHHHHHHHHHHHHHHHHHc
Q 012385 310 PNQQGIGDLTRRGTSNKLIFPLMALL-AGILGGLFGIGGGMLISPLLL-QIGTAPEVTAATCSFMVFFSSTMSAFQYLLL 387 (465)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~l~g~~-aG~~sGl~GIGGG~i~~P~Ll-~~g~~~~~A~aTs~~~~~~~s~~s~~~~~~~ 387 (465)
.+.......|.+ +|+++|++|+|||.+.+|++. ..+.|++++.+|+.++.++++..+...|...
T Consensus 123 --------------~~~~~~~~~g~~~~G~~~G~~g~ggg~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~~~~~~~~~ 188 (240)
T PF01925_consen 123 --------------PKRWLLFLLGGLFIGFLSGLFGIGGGPLLVPLLLYLFGLDPKKARATSAFFFFFSSVAALISFLIL 188 (240)
T ss_pred --------------cchhhhhhhhHHHhhHHHhhhhccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 011112334455 999999999999999999997 4799999999999999999999999999999
Q ss_pred CCccHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 012385 388 GMEQSGTALI---FAIVCFVASLLGLLVVQKAIQEFGRASLIVFSV 430 (465)
Q Consensus 388 G~i~~~~~~~---l~~g~~lGa~iGa~l~~~i~~~~~r~~~iv~ll 430 (465)
|.+||+.... +.+++++|+++|.++.+|+++++.|+.+.++++
T Consensus 189 g~~~~~~~~~~~~~~~~~~~G~~lG~~~~~~i~~~~~~~~~~~ll~ 234 (240)
T PF01925_consen 189 GDVDWPMLLLSLILLPGAFLGAFLGAKLARKIPQKVFRRIFLILLL 234 (240)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999987776 999999999999999999999999999777663
No 4
>PRK10621 hypothetical protein; Provisional
Probab=99.32 E-value=8.1e-11 Score=116.33 Aligned_cols=114 Identities=17% Similarity=0.162 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHhhccccchhhhHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccHHHHHHHHHHH
Q 012385 69 AGVFCFIAASISSAGGIGGGGLYIPILTISAGLELRTATSFSAFMVTGGSIANVMCNMLGTIGGKSFIDYDIALLSEPCM 148 (465)
Q Consensus 69 ~~~~g~lag~is~~~GiGGG~i~vPiL~~~~gl~~~~A~~ts~~~i~~~s~~~~~~~~~p~~~~~~~Id~~~~~~l~~~~ 148 (465)
...+|+++|+++++.|+|||.+.+|.+...+++|+++|++++....+.+++.+...|.. .+.+||..+..+.+++
T Consensus 142 ~~~~G~~~G~lsG~~G~GgG~~~v~~l~~~~~~~~~~a~~ts~~~~~~~~~~~~~~~~~-----~G~v~~~~~l~l~~g~ 216 (266)
T PRK10621 142 ALIAGGCVGFYDGFFGPGAGSFYALAFVTLCGFNLAKATAHAKVLNATSNIGGLLLFIL-----GGKVIWATGFVMLVGQ 216 (266)
T ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHh-----CCeehHHHHHHHHHHH
Confidence 34578889999999999999999999998899999999999999889999988888876 7889999999999999
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhc
Q 012385 149 LLGVSIGVICNLVFPEWLVTVLFAILLAWSTFKTCTNGF 187 (465)
Q Consensus 149 llGa~iGa~l~~~lp~~~l~~l~~~~Ll~~~~~~~~~~~ 187 (465)
++|+.+|+++.+.+|++.+|.++..+++.++.+++.+..
T Consensus 217 ~~G~~lG~~l~~~~~~~~lr~~~~~ll~~~~i~~~~~~~ 255 (266)
T PRK10621 217 FLGARLGARLVLSKGQKLIRPMIVIVSAVMSAKLLYDSH 255 (266)
T ss_pred HHHHHHHHHHHHHcCchHhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988754
No 5
>COG0730 Predicted permeases [General function prediction only]
Probab=99.24 E-value=1.5e-10 Score=113.85 Aligned_cols=104 Identities=33% Similarity=0.477 Sum_probs=97.7
Q ss_pred hHHHHHHHHHHHHHhhhcccchhhhHHHHHHHcCCchHHHHHhHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHH
Q 012385 326 KLIFPLMALLAGILGGLFGIGGGMLISPLLLQIGTAPEVTAATCSFMVFFSSTMSAFQYLLLGMEQSGTALIFAIVCFVA 405 (465)
Q Consensus 326 ~~~~~l~g~~aG~~sGl~GIGGG~i~~P~Ll~~g~~~~~A~aTs~~~~~~~s~~s~~~~~~~G~i~~~~~~~l~~g~~lG 405 (465)
.....+.|+++|+++|++|+|||.+.+|.++..++||+.|.+|+.....+++..+...|.++|++||+.+..+.+++++|
T Consensus 7 ~~~~~~~g~l~g~i~g~~G~Ggg~i~~P~L~~~~~~~~~a~~t~l~~~~~~~~~~~~~~~k~~~v~~~~~~~l~~~~~~G 86 (258)
T COG0730 7 LLLLFLVGLLAGFISGLAGGGGGLLTVPALLLLGLPPAAALGTSLLAVLFTSLSSALAYLKRGNVDWKLALILLLGALIG 86 (258)
T ss_pred HHHHHHHHHHHHHHHHHhcccchHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHH
Confidence 45667889999999999999999999999998889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Q 012385 406 SLLGLLVVQKAIQEFGRASLIVFS 429 (465)
Q Consensus 406 a~iGa~l~~~i~~~~~r~~~iv~l 429 (465)
+.+|+.+..+++++..+..+.+++
T Consensus 87 ~~lG~~l~~~~~~~~l~~~~~~~l 110 (258)
T COG0730 87 AFLGALLALLLPAELLKLLFGLLL 110 (258)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHH
Confidence 999999999999999998765555
No 6
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised.; GO: 0016021 integral to membrane
Probab=99.09 E-value=1.8e-09 Score=104.49 Aligned_cols=108 Identities=29% Similarity=0.389 Sum_probs=98.1
Q ss_pred HHHHHH-HHHHhhccccchhhhHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccHHHHHH---HH
Q 012385 70 GVFCFI-AASISSAGGIGGGGLYIPILTISAGLELRTATSFSAFMVTGGSIANVMCNMLGTIGGKSFIDYDIALL---SE 145 (465)
Q Consensus 70 ~~~g~l-ag~is~~~GiGGG~i~vPiL~~~~gl~~~~A~~ts~~~i~~~s~~~~~~~~~p~~~~~~~Id~~~~~~---l~ 145 (465)
..+|++ +|+++++.|+|||.+.+|++....++|++++.+|+....+.++..+...|.. .+.+||+.... +.
T Consensus 129 ~~~g~~~~G~~~G~~g~ggg~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~ 203 (240)
T PF01925_consen 129 FLLGGLFIGFLSGLFGIGGGPLLVPLLLYLFGLDPKKARATSAFFFFFSSVAALISFLI-----LGDVDWPMLLLSLILL 203 (240)
T ss_pred hhhhHHHhhHHHhhhhccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCcccHHHHHHHHHHH
Confidence 344444 8888888899999999999998789999999999999999999999999987 89999998777 99
Q ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Q 012385 146 PCMLLGVSIGVICNLVFPEWLVTVLFAILLAWSTFKT 182 (465)
Q Consensus 146 ~~~llGa~iGa~l~~~lp~~~l~~l~~~~Ll~~~~~~ 182 (465)
+++++|+.+|.++.+.+|++.++.++.++++.++.++
T Consensus 204 ~~~~~G~~lG~~~~~~i~~~~~~~~~~~ll~~~~~~l 240 (240)
T PF01925_consen 204 PGAFLGAFLGAKLARKIPQKVFRRIFLILLLLSGLKL 240 (240)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999988763
No 7
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=94.94 E-value=4.3 Score=40.15 Aligned_cols=88 Identities=15% Similarity=0.058 Sum_probs=63.4
Q ss_pred cccchhhhHHHHHHHcCCchHHHHHhHHHHHHHHHHHHHHHHHHcC------CccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012385 343 FGIGGGMLISPLLLQIGTAPEVTAATCSFMVFFSSTMSAFQYLLLG------MEQSGTALIFAIVCFVASLLGLLVVQKA 416 (465)
Q Consensus 343 ~GIGGG~i~~P~Ll~~g~~~~~A~aTs~~~~~~~s~~s~~~~~~~G------~i~~~~~~~l~~g~~lGa~iGa~l~~~i 416 (465)
=|+.=.-..+...+..|++.++|.--|-.+..+....+..--.... ..++.....-.+.+++-+++.-+...|+
T Consensus 160 PGiSRSG~Ti~~~l~~G~~r~~A~~fSFllsiP~ilga~~l~~~~~~~~~~~~~~~~~~~ig~~~afv~g~l~i~~ll~~ 239 (259)
T PF02673_consen 160 PGISRSGATITAGLLLGLDREEAARFSFLLSIPAILGAGLLELKDLFSAGLDSGSWPPLLIGFVVAFVVGYLAIKWLLRF 239 (259)
T ss_pred CCcChHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555445566666789999999999999988888888776554432 2345555556677788888888888888
Q ss_pred HHHHHHHHHHHHHH
Q 012385 417 IQEFGRASLIVFSV 430 (465)
Q Consensus 417 ~~~~~r~~~iv~ll 430 (465)
-++...+.|.++.+
T Consensus 240 ~~~~~~~~F~~Y~~ 253 (259)
T PF02673_consen 240 LKRRKLRPFAIYRI 253 (259)
T ss_pred HhhCCceeehhHHh
Confidence 88877777766653
No 8
>PF04018 DUF368: Domain of unknown function (DUF368); InterPro: IPR007163 This is a predicted transmembrane family of unknown function. Proteins usually have between 6 and 9 predicted transmembrane segments.
Probab=93.21 E-value=9.4 Score=37.68 Aligned_cols=86 Identities=19% Similarity=0.210 Sum_probs=56.9
Q ss_pred chhHHHHHHHHHHHHHhhhcccchhhhHHHHHHHcCCchHHHHHhHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHH
Q 012385 324 SNKLIFPLMALLAGILGGLFGIGGGMLISPLLLQIGTAPEVTAATCSFMVFFSSTMSAFQYLLLGMEQSGTALIFAIVCF 403 (465)
Q Consensus 324 ~~~~~~~l~g~~aG~~sGl~GIGGG~i~~P~Ll~~g~~~~~A~aTs~~~~~~~s~~s~~~~~~~G~i~~~~~~~l~~g~~ 403 (465)
.+.+...+.|++++.--=+=|+.|..+ |+.+|.=.....+-+.+.. -|+....++++|++
T Consensus 140 ~~~~~lf~~G~ia~~AMIlPGiSGS~i----LlilG~Y~~vl~ai~~~~~----------------~~~~~L~~f~~G~~ 199 (257)
T PF04018_consen 140 PSYLYLFLAGAIAACAMILPGISGSFI----LLILGLYEPVLSAISDLID----------------SNIPVLIPFGIGVV 199 (257)
T ss_pred chHHHHHHHHHHHHHHHhcCCCcHHHH----HHHHHhHHHHHHHHHHhhh----------------hhhHHHHHHHHHHH
Confidence 345556666666665555567777432 2344443333333322222 57888999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Q 012385 404 VASLLGLLVVQKAIQEFGRASLIVFS 429 (465)
Q Consensus 404 lGa~iGa~l~~~i~~~~~r~~~iv~l 429 (465)
+|-.+-+|+.+++-+++.+..+..++
T Consensus 200 ~Gi~~~skll~~ll~~~~~~t~~~i~ 225 (257)
T PF04018_consen 200 IGILLFSKLLSYLLKRYRSQTYAFII 225 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888765544
No 9
>PRK11469 hypothetical protein; Provisional
Probab=87.30 E-value=26 Score=32.88 Aligned_cols=42 Identities=21% Similarity=0.374 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhc
Q 012385 145 EPCMLLGVSIGVICNLVFPEWLVTVLFAILLAWSTFKTCTNGF 187 (465)
Q Consensus 145 ~~~~llGa~iGa~l~~~lp~~~l~~l~~~~Ll~~~~~~~~~~~ 187 (465)
....++|-..|..+..++|+.. .++-..+|++++.++++++.
T Consensus 48 ~~m~~~g~~~G~~l~~~i~~~~-~~i~~~lL~~lG~~mi~e~~ 89 (188)
T PRK11469 48 TLTPLIGWGMGMLASRFVLEWN-HWIAFVLLIFLGGRMIIEGF 89 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 3455566777888888877744 77778888999999999854
No 10
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=84.68 E-value=37 Score=32.27 Aligned_cols=52 Identities=17% Similarity=0.212 Sum_probs=39.9
Q ss_pred ccHHHHHHH----HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhc
Q 012385 136 IDYDIALLS----EPCMLLGVSIGVICNLVFPEWLVTVLFAILLAWSTFKTCTNGF 187 (465)
Q Consensus 136 Id~~~~~~l----~~~~llGa~iGa~l~~~lp~~~l~~l~~~~Ll~~~~~~~~~~~ 187 (465)
+.++....+ .....+|..+|..+..++|+++-.++=+++|++.+.+++++++
T Consensus 28 ~~~~~~l~ig~~~~~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~mi~~~~ 83 (206)
T TIGR02840 28 IPFLSNLIIAVISGLFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIWIIYNAF 83 (206)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 345554444 4566677778888888888888888889999999999999865
No 11
>PRK00281 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=78.87 E-value=72 Score=31.69 Aligned_cols=87 Identities=15% Similarity=0.108 Sum_probs=56.0
Q ss_pred cccchhhhHHHHHHHcCCchHHHHHhHHHHHHHHHHHHHHHHHHcC--C---ccHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 012385 343 FGIGGGMLISPLLLQIGTAPEVTAATCSFMVFFSSTMSAFQYLLLG--M---EQSGTALIFAIVCFVASLLGLLVVQKAI 417 (465)
Q Consensus 343 ~GIGGG~i~~P~Ll~~g~~~~~A~aTs~~~~~~~s~~s~~~~~~~G--~---i~~~~~~~l~~g~~lGa~iGa~l~~~i~ 417 (465)
=|+.=.-..+...+..|++.++|+--|-.+..+.-+.+...-.... . .++...+.-.+.+++-+++.-+...|.-
T Consensus 164 PGiSRSG~TI~~~l~~G~~r~~Aa~fSFLlsiPai~gA~~l~~~~~~~~~~~~~~~~~~~g~i~afi~g~~~I~~ll~~~ 243 (268)
T PRK00281 164 PGTSRSGATISGGLLLGLSREAAAEFSFLLAIPAMLGASLLDLLKLFHLLSAADLPLLAVGFVVAFVVALIAIKWLLKYI 243 (268)
T ss_pred CCCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444434555666788999999999998888887777766443221 1 3333334445566777777777777777
Q ss_pred HHHHHHHHHHHH
Q 012385 418 QEFGRASLIVFS 429 (465)
Q Consensus 418 ~~~~r~~~iv~l 429 (465)
++..-..|.++.
T Consensus 244 ~~~~~~~F~~Yr 255 (268)
T PRK00281 244 KRHSFTPFAIYR 255 (268)
T ss_pred HhCCceehHHHH
Confidence 766666666555
No 12
>COG2119 Predicted membrane protein [Function unknown]
Probab=77.54 E-value=63 Score=30.29 Aligned_cols=52 Identities=15% Similarity=0.024 Sum_probs=43.6
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhh
Q 012385 134 SFIDYDIALLSEPCMLLGVSIGVICNLVFPEWLVTVLFAILLAWSTFKTCTN 185 (465)
Q Consensus 134 ~~Id~~~~~~l~~~~llGa~iGa~l~~~lp~~~l~~l~~~~Ll~~~~~~~~~ 185 (465)
..|---.+.-......+.+.+|......+|++.+.+.-+...+..+.+++.+
T Consensus 34 ~~v~~g~~~a~~~m~~la~~vG~~~~~~~~~~~~~~~~~~~Flafav~~l~e 85 (190)
T COG2119 34 WPVFAGIAIALFAMHALAVLVGHAAASLLPERPLAWASGVLFLAFAVWMLIE 85 (190)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHhcc
Confidence 3344556666777888999999999999999999999999999999988775
No 13
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=67.00 E-value=75 Score=29.66 Aligned_cols=32 Identities=28% Similarity=0.420 Sum_probs=23.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 012385 391 QSGTALIFAIVCFVASLLGLLVVQKAIQEFGR 422 (465)
Q Consensus 391 ~~~~~~~l~~g~~lGa~iGa~l~~~i~~~~~r 422 (465)
+.+..+.+.+.+++++.+|+.+.+|+-+|+.+
T Consensus 154 ~~~~~~~~~~~~~v~a~lG~~lG~kllkKHF~ 185 (186)
T PF09605_consen 154 TPWMLIIIIIITFVGALLGALLGKKLLKKHFE 185 (186)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44566666777788888888888887777654
No 14
>COG3619 Predicted membrane protein [Function unknown]
Probab=61.14 E-value=1e+02 Score=29.84 Aligned_cols=46 Identities=20% Similarity=0.147 Sum_probs=35.7
Q ss_pred HHHHhcccCCCccccHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHH
Q 012385 123 MCNMLGTIGGKSFIDYDIALLSEPCMLLGVSIGVICNLVFPEWLVTV 169 (465)
Q Consensus 123 ~~~~~p~~~~~~~Id~~~~~~l~~~~llGa~iGa~l~~~lp~~~l~~ 169 (465)
..++.++++ ++..||..-..+..+-+.|+++|+.+...+-++.+..
T Consensus 157 ~~~l~~k~~-~~~~~~~~~~~~il~f~~GAi~g~ll~~~~g~~al~~ 202 (226)
T COG3619 157 GRYLSGKDK-EKLRDWLIYLSLILSFIVGAICGALLTLFFGLKALWV 202 (226)
T ss_pred HHHHhccch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 334444445 7788999999999999999999999998877665544
No 15
>PTZ00370 STEVOR; Provisional
Probab=60.00 E-value=63 Score=32.31 Aligned_cols=46 Identities=20% Similarity=0.304 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhhcc---HHHHHHHHHHHHHHHHHHHHhhhcchhhhhhh
Q 012385 150 LGVSIGVICNLVFP---EWLVTVLFAILLAWSTFKTCTNGFSFWKLESE 195 (465)
Q Consensus 150 lGa~iGa~l~~~lp---~~~l~~l~~~~Ll~~~~~~~~~~~~~~k~e~~ 195 (465)
.|...|+..+.+.| ..++.++++++|++.=+++.++..+.||.|.+
T Consensus 243 agtAAtaAsaaF~Pygiaalvllil~vvliilYiwlyrrRK~swkhe~k 291 (296)
T PTZ00370 243 AGTAASAASSAFYPYGIAALVLLILAVVLIILYIWLYRRRKNSWKHECK 291 (296)
T ss_pred cchHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHH
Confidence 34444444444445 34556666777777777777777788888754
No 16
>PF04066 MrpF_PhaF: Multiple resistance and pH regulation protein F (MrpF / PhaF); InterPro: IPR007208 Members of the PhaF/MrpF family are predicted to be integral membrane proteins with three transmembrane regions, involved in regulation of pH. PhaF is part of a potassium efflux system involved in pH regulation. It is also involved in symbiosis in Rhizobium meliloti (Sinorhizobium meliloti) []. MrpF is a part of a Na+/H+ antiporter complex, also involved in pH homeostasis. MrpF is thought to be an efflux system for Na+ and cholate []. The Mrp system in Gram-positive species may also have primary energisation capacities [].; GO: 0015075 ion transmembrane transporter activity, 0034220 ion transmembrane transport, 0016021 integral to membrane
Probab=57.75 E-value=62 Score=23.89 Aligned_cols=54 Identities=11% Similarity=0.113 Sum_probs=44.2
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 012385 362 PEVTAATCSFMVFFSSTMSAFQYLLLGMEQSGTALIFAIVCFVASLLGLLVVQK 415 (465)
Q Consensus 362 ~~~A~aTs~~~~~~~s~~s~~~~~~~G~i~~~~~~~l~~g~~lGa~iGa~l~~~ 415 (465)
+.+.+|...+...................-.+.++.+.+-+++|+..-+|...|
T Consensus 2 ~DRvva~d~~~~~~v~~l~l~a~~~~~~~~lDialv~all~Fvgtva~arfl~r 55 (55)
T PF04066_consen 2 ADRVVALDLISTLIVALLALLAIITGRPFYLDIALVYALLGFVGTVAFARFLER 55 (55)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 467788888888888888888887777777899999999999999888776543
No 17
>COG2119 Predicted membrane protein [Function unknown]
Probab=52.62 E-value=46 Score=31.16 Aligned_cols=51 Identities=18% Similarity=0.104 Sum_probs=44.3
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhh
Q 012385 135 FIDYDIALLSEPCMLLGVSIGVICNLVFPEWLVTVLFAILLAWSTFKTCTN 185 (465)
Q Consensus 135 ~Id~~~~~~l~~~~llGa~iGa~l~~~lp~~~l~~l~~~~Ll~~~~~~~~~ 185 (465)
.+-.-..+-+.+++++++..|-++++.+|++.++.+-+++.++.+...+..
T Consensus 134 ~V~~Gt~lg~~l~s~laVl~G~~ia~ki~~r~l~~~aallFl~fal~~~~~ 184 (190)
T COG2119 134 AVFAGTTLGMILASVLAVLLGKLIAGKLPERLLRFIAALLFLIFALVLLWQ 184 (190)
T ss_pred eeehhhHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566788899999999999999999999999999999998888877765
No 18
>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities. These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane
Probab=51.41 E-value=42 Score=26.75 Aligned_cols=42 Identities=17% Similarity=0.091 Sum_probs=34.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Q 012385 136 IDYDIALLSEPCMLLGVSIGVICNLVFPEWLVTVLFAILLAW 177 (465)
Q Consensus 136 Id~~~~~~l~~~~llGa~iGa~l~~~lp~~~l~~l~~~~Ll~ 177 (465)
+-.-...-+.....+++.+|.++.+++|+++++++-+.+.+.
T Consensus 35 V~~G~~~al~~~~~lav~~G~~l~~~ip~~~i~~~~~~lFl~ 76 (78)
T PF01169_consen 35 VFAGATLALALATGLAVLLGSWLASRIPERYIKWVAGALFLL 76 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 444556667788899999999999999999999988877654
No 19
>COG4280 Predicted membrane protein [Function unknown]
Probab=48.48 E-value=1.1e+02 Score=29.08 Aligned_cols=32 Identities=9% Similarity=0.180 Sum_probs=27.9
Q ss_pred hhccHHHHHHHHHHHHHHHHHHHHhhhcchhh
Q 012385 160 LVFPEWLVTVLFAILLAWSTFKTCTNGFSFWK 191 (465)
Q Consensus 160 ~~lp~~~l~~l~~~~Ll~~~~~~~~~~~~~~k 191 (465)
..+|-..+++..+++|++-+++-.|+..++++
T Consensus 59 ~lvPln~lqiv~gvLLllFG~rw~Rsavrr~a 90 (236)
T COG4280 59 YLVPLNYLQIVSGVLLLLFGYRWIRSAVRRFA 90 (236)
T ss_pred eeeechHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36799999999999999999999999776554
No 20
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=46.80 E-value=2.8e+02 Score=26.89 Aligned_cols=27 Identities=22% Similarity=0.038 Sum_probs=21.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhc
Q 012385 136 IDYDIALLSEPCMLLGVSIGVICNLVF 162 (465)
Q Consensus 136 Id~~~~~~l~~~~llGa~iGa~l~~~l 162 (465)
--|+....+.+|+++|+.+|......-
T Consensus 7 ~~~~~~~~illg~~iGg~~G~~~~~~~ 33 (248)
T PF11368_consen 7 RILRFLLLILLGGLIGGFIGFFIGRIG 33 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 447888889999999999998776544
No 21
>PF05232 BTP: Bacterial Transmembrane Pair family; InterPro: IPR007896 This domain represents a conserved pair of transmembrane helices. It appears to be found as two tandem repeats in a family of hypothetical proteins.
Probab=43.45 E-value=72 Score=24.70 Aligned_cols=41 Identities=17% Similarity=0.186 Sum_probs=33.1
Q ss_pred chhhhHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 012385 86 GGGGLYIPILTISAGLELRTATSFSAFMVTGGSIANVMCNM 126 (465)
Q Consensus 86 GGG~i~vPiL~~~~gl~~~~A~~ts~~~i~~~s~~~~~~~~ 126 (465)
|+=.+.+|++..++|.+..+|.+++.........-+.++|.
T Consensus 16 ~~l~~~~P~~a~~~~~~~~~a~~l~v~~s~~a~~wn~ifN~ 56 (67)
T PF05232_consen 16 GALLISVPLIAWWLGISLWQAGALDVGLSLFAMVWNYIFNW 56 (67)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467899999999999999998888877777777776665
No 22
>PRK12554 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=42.99 E-value=3.5e+02 Score=26.96 Aligned_cols=86 Identities=12% Similarity=0.079 Sum_probs=52.4
Q ss_pred ccchhhhHHHHHHHcCCchHHHHHhHHHHHHHHHHHHHHHHHHcC--Cc----cHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 012385 344 GIGGGMLISPLLLQIGTAPEVTAATCSFMVFFSSTMSAFQYLLLG--ME----QSGTALIFAIVCFVASLLGLLVVQKAI 417 (465)
Q Consensus 344 GIGGG~i~~P~Ll~~g~~~~~A~aTs~~~~~~~s~~s~~~~~~~G--~i----~~~~~~~l~~g~~lGa~iGa~l~~~i~ 417 (465)
|+.=.-..+...+..|++.++|+=-|-++..+.-+.+...-.... .. ++.....-.+.+++-+++.-+...+.-
T Consensus 167 GiSRSG~TI~a~l~~G~~r~~Aa~fSFllsiP~i~gA~~l~~~~~~~~~~~~~~~~~~~~g~i~afi~~~l~i~~ll~~~ 246 (276)
T PRK12554 167 GVSRSGATIIAGLLLGLTREAAARFSFLLAIPAVFGAGLLELYKIFHDPNASTLLGPTAVAFIVAFIVGYISIAWFMNFL 246 (276)
T ss_pred CCCCchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 343333445555678999999988888888887777766443221 11 222223345556677777777777777
Q ss_pred HHHHHHHHHHHH
Q 012385 418 QEFGRASLIVFS 429 (465)
Q Consensus 418 ~~~~r~~~iv~l 429 (465)
++..-..|.++.
T Consensus 247 ~~~~~~~Fa~Yr 258 (276)
T PRK12554 247 KKGSLKYFAIYR 258 (276)
T ss_pred HhCCceEEehHH
Confidence 666544555554
No 23
>PRK10263 DNA translocase FtsK; Provisional
Probab=41.86 E-value=3.9e+02 Score=32.63 Aligned_cols=21 Identities=5% Similarity=0.044 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHhhccH
Q 012385 144 SEPCMLLGVSIGVICNLVFPE 164 (465)
Q Consensus 144 l~~~~llGa~iGa~l~~~lp~ 164 (465)
+..|+++|..++..+...+..
T Consensus 140 ~~gGGIIG~lLs~lL~~LfG~ 160 (1355)
T PRK10263 140 FASGGVIGSLLSTTLQPLLHS 160 (1355)
T ss_pred ccccchHHHHHHHHHHHHHhH
Confidence 356888888888887777654
No 24
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=40.47 E-value=5.3e+02 Score=28.30 Aligned_cols=41 Identities=10% Similarity=0.092 Sum_probs=29.2
Q ss_pred HHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 012385 383 QYLLLGMEQSGTALIFAIVCFVASLLGLLVVQKAIQEFGRA 423 (465)
Q Consensus 383 ~~~~~G~i~~~~~~~l~~g~~lGa~iGa~l~~~i~~~~~r~ 423 (465)
.+...|.++...+..+..|+-+|+-+-+.++..-.+..-|+
T Consensus 200 ~l~~~glis~~~~~alvLGaNlGt~i~a~laa~~~~~~arr 240 (533)
T COG1283 200 SLTSQGLISLEAALALVLGANLGTTITAVLAALGASAAARR 240 (533)
T ss_pred HHHhCcccchhHHHHHHHHHhhhchhHHHHHhcccchhHHH
Confidence 34557888999999999888888887777765544433333
No 25
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=39.83 E-value=1.8e+02 Score=27.51 Aligned_cols=47 Identities=19% Similarity=0.243 Sum_probs=31.8
Q ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHhhccH---------HHHHHHHHHHHHHHH
Q 012385 133 KSFIDYDIALLSEPCMLLGVSIGVICNLVFPE---------WLVTVLFAILLAWST 179 (465)
Q Consensus 133 ~~~Id~~~~~~l~~~~llGa~iGa~l~~~lp~---------~~l~~l~~~~Ll~~~ 179 (465)
++.--++-..+-..+.++|..+|+.+...++. ..+.-++..++++++
T Consensus 135 K~~~~~rA~~~~~~~L~~G~~lGs~l~~~l~~~~~p~~~s~~~~~sl~~~i~lwl~ 190 (194)
T PF11833_consen 135 KERKLGRAFLWTLGGLVVGLILGSLLASWLPVDIVPGPWSPEQLVSLFTYILLWLV 190 (194)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 44445677777777778888999988876643 455566666665554
No 26
>COG1968 BacA Undecaprenyl pyrophosphate phosphatase [Lipid transport and metabolism]
Probab=38.56 E-value=4.1e+02 Score=26.47 Aligned_cols=77 Identities=17% Similarity=0.155 Sum_probs=48.5
Q ss_pred HHHHHcCCchHHHHHhHHHHHHHHHHHHHHHHHHcC-----CccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 012385 353 PLLLQIGTAPEVTAATCSFMVFFSSTMSAFQYLLLG-----MEQSGTALIFAIVCFVASLLGLLVVQKAIQEFGRASLIV 427 (465)
Q Consensus 353 P~Ll~~g~~~~~A~aTs~~~~~~~s~~s~~~~~~~G-----~i~~~~~~~l~~g~~lGa~iGa~l~~~i~~~~~r~~~iv 427 (465)
...+.+|++.++|.=-|-+...++.+.+..--.... ..++.....-.+.+++-+++.-+...+.-++..-..|.+
T Consensus 175 ~~~lllG~~r~~AaefSFlLaIP~m~GA~~l~l~k~~~~~~~~~~~~l~vg~i~AFvv~~~~I~~ll~~i~~~~~~~F~~ 254 (270)
T COG1968 175 SGGLLLGLSREAAAEFSFLLAIPAMFGASALDLFKSGDALSAADLPILLVGFIVAFVVSLIAIKFLLRFIKRHSFIPFAI 254 (270)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeehHH
Confidence 344678999888888887777777776665444332 234455555566677777777776666666555455555
Q ss_pred HH
Q 012385 428 FS 429 (465)
Q Consensus 428 ~l 429 (465)
+-
T Consensus 255 Yr 256 (270)
T COG1968 255 YR 256 (270)
T ss_pred HH
Confidence 43
No 27
>PRK09548 PTS system ascorbate-specific transporter subunits IICB; Provisional
Probab=37.34 E-value=1e+02 Score=34.22 Aligned_cols=15 Identities=7% Similarity=0.098 Sum_probs=10.7
Q ss_pred CccccHHHHHHHHHH
Q 012385 133 KSFIDYDIALLSEPC 147 (465)
Q Consensus 133 ~~~Id~~~~~~l~~~ 147 (465)
.+..||...++...-
T Consensus 422 ~g~~D~~~~~p~~~~ 436 (602)
T PRK09548 422 MGMADWALGFPPILQ 436 (602)
T ss_pred ecCcchhhhhhhHhh
Confidence 477899988885444
No 28
>PF09489 CbtB: Probable cobalt transporter subunit (CbtB); InterPro: IPR012667 This entry represents a family of proteins which have been proposed to act as cobalt transporters acting in concert with vitamin B12 biosynthesis systems []. Evidence for this assignment includes 1) prediction of a single transmembrane segment and a C-terminal histidine-rich motif likely to be a metal-binding site, 2) positional gene linkage with known B12 biosynthesis genes, 3) upstream proximity of B12 transcriptional regulatory sites, 4) the absence of other known cobalt import systems and 5) the obligate co-localization with a protein (CbtA) predicted to have five additional transmembrane segments.
Probab=35.86 E-value=1.1e+02 Score=22.85 Aligned_cols=29 Identities=24% Similarity=0.452 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHhhh-cCCC-CCCCCCC
Q 012385 435 ALSTVLITSFEALDIWRDYT-SGNY-MGFKFPC 465 (465)
Q Consensus 435 ~~s~v~~~~~g~~~~~~~~~-~g~~-~gf~~~c 465 (465)
.+..+....+.=..++.|.. |.|+ +|| ||
T Consensus 23 g~~l~~~~gf~~~~~~HdaaHD~RH~~gf--PC 53 (54)
T PF09489_consen 23 GLLLLYFVGFSQAPAVHDAAHDTRHAAGF--PC 53 (54)
T ss_pred HHHHHHHHHhcchHHHHHHhhhhHHhcCC--CC
Confidence 33334444455566777766 6666 776 66
No 29
>PHA02650 hypothetical protein; Provisional
Probab=34.47 E-value=1.8e+02 Score=23.39 Aligned_cols=43 Identities=7% Similarity=0.070 Sum_probs=21.1
Q ss_pred HHhcCCCCCCCcccccccChhHHHHHHHhHHHHHHHHHHHHHH
Q 012385 259 YLFRGNRDGQGIITMKPCGVGYWILSSLQIPLAIAFTAWILCR 301 (465)
Q Consensus 259 ~ll~g~~~~~s~i~i~~c~~~Yw~~~~~~~~~~~~~~~~~~~~ 301 (465)
+.+.+.+.-.+.+....|..|||++..+.+.+.+++..+.+.+
T Consensus 29 SVLtD~~~~~~~~~~~~~~~~~~~ii~i~~v~i~~l~~flYLK 71 (81)
T PHA02650 29 SVLSDEDGSKKTIKSVSWFNGQNFIFLIFSLIIVALFSFFVFK 71 (81)
T ss_pred HHHcCCCCccccccccCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443323333455666777766665555544443333333
No 30
>PRK12600 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=34.02 E-value=2.4e+02 Score=23.36 Aligned_cols=56 Identities=16% Similarity=0.166 Sum_probs=47.1
Q ss_pred CchHHHHHhHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 012385 360 TAPEVTAATCSFMVFFSSTMSAFQYLLLGMEQSGTALIFAIVCFVASLLGLLVVQK 415 (465)
Q Consensus 360 ~~~~~A~aTs~~~~~~~s~~s~~~~~~~G~i~~~~~~~l~~g~~lGa~iGa~l~~~ 415 (465)
-.+++.+|...+.....++............-.+.++.++.-+++|+..=+|...+
T Consensus 29 t~~DRvvAlD~l~~~~v~~i~l~~~~~~~~~~ldvalvlAll~Fv~tva~Aryl~~ 84 (94)
T PRK12600 29 TLADRVVALDAIGINLIAIIALFSILLDTKAYLEVILLIGILAFIGTAAFSKFIEK 84 (94)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46899999999999888888888887777777899999999999998887776653
No 31
>TIGR02459 CbtB cobalt transporter subunit CbtB (proposed). This model represents a family of proteins which have been proposed to act as cobalt transporters acting in concert with vitamin B12 biosynthesis systems. Evidence for this assignment includes 1) prediction of a single trans-membrane segment and a C-terminal histidine-rich motif likely to be a metal-binding site, 2) positional gene linkage with known B12 biosynthesis genes, 3) upstream proximity of B12 transcriptional regulatory sites, 4) the absence of other known cobalt import systems and 5) the obligate co-localization with a protein (CbtA) predicted to have five additional trans-membrane segments.
Probab=33.93 E-value=81 Score=24.00 Aligned_cols=17 Identities=24% Similarity=0.563 Sum_probs=11.2
Q ss_pred HHHHHhhh-cCCC-CCCCCCC
Q 012385 447 LDIWRDYT-SGNY-MGFKFPC 465 (465)
Q Consensus 447 ~~~~~~~~-~g~~-~gf~~~c 465 (465)
.+.+.|.. |+|+ +|| ||
T Consensus 41 ~~~vHe~~HD~RH~~gF--PC 59 (60)
T TIGR02459 41 IDAVHNAAHDTRHSAAF--PC 59 (60)
T ss_pred HHHHHHHHHHHHHhcCC--CC
Confidence 45556655 7777 888 66
No 32
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=33.67 E-value=2.1e+02 Score=28.39 Aligned_cols=50 Identities=16% Similarity=0.129 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhcchhh
Q 012385 142 LLSEPCMLLGVSIGVICNLVFPEWLVTVLFAILLAWSTFKTCTNGFSFWK 191 (465)
Q Consensus 142 ~~l~~~~llGa~iGa~l~~~lp~~~l~~l~~~~Ll~~~~~~~~~~~~~~k 191 (465)
..+.++.++.+.+|=..-..+|..+-..+-+++.++-++++++.+++..+
T Consensus 107 ~AL~lMTiLS~~lG~aap~lipr~~T~~~~t~LF~iFGlkmL~eg~~~~~ 156 (294)
T KOG2881|consen 107 SALALMTILSVLLGWAAPNLIPRKYTYYLATALFLIFGLKMLKEGWEMSP 156 (294)
T ss_pred HHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 34566778888888777778888888888888888899999999865443
No 33
>COG1971 Predicted membrane protein [Function unknown]
Probab=33.64 E-value=4.1e+02 Score=25.03 Aligned_cols=52 Identities=19% Similarity=0.105 Sum_probs=33.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhcc---HHHHHHHHHHHHHHHHHHHHhhhcc
Q 012385 137 DYDIALLSEPCMLLGVSIGVICNLVFP---EWLVTVLFAILLAWSTFKTCTNGFS 188 (465)
Q Consensus 137 d~~~~~~l~~~~llGa~iGa~l~~~lp---~~~l~~l~~~~Ll~~~~~~~~~~~~ 188 (465)
....+..+.....+-..+|....+.+| ..+=.++=.++|.+.+.+|++++++
T Consensus 36 ~L~ia~~fG~f~~i~pliG~~~g~~~s~~i~~~~~wigf~lL~~lG~~mI~e~f~ 90 (190)
T COG1971 36 ALVIALIFGVFQAIMPLIGWFIGKFLSTFIAEWAHWIGFVLLIILGLKMIIEGFK 90 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445555555555444555555555444 5566677778888999999998763
No 34
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=32.96 E-value=2.1e+02 Score=30.02 Aligned_cols=18 Identities=11% Similarity=-0.075 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 012385 145 EPCMLLGVSIGVICNLVF 162 (465)
Q Consensus 145 ~~~~llGa~iGa~l~~~l 162 (465)
..+..+|..++..+....
T Consensus 379 ~lg~~igp~i~G~l~~~~ 396 (455)
T TIGR00892 379 CCAVLIGPPLAGRLVDAT 396 (455)
T ss_pred HHHHHccccceeeeehhc
Confidence 344444554444444333
No 35
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=32.45 E-value=6.1e+02 Score=26.62 Aligned_cols=39 Identities=23% Similarity=0.263 Sum_probs=25.0
Q ss_pred hhhHHHHHH--HcCCchHHHHHhHHHHHHHHHHHHHHHHHHc
Q 012385 348 GMLISPLLL--QIGTAPEVTAATCSFMVFFSSTMSAFQYLLL 387 (465)
Q Consensus 348 G~i~~P~Ll--~~g~~~~~A~aTs~~~~~~~s~~s~~~~~~~ 387 (465)
+.+.+|+++ .. +++++...--....+.+.+.+.++....
T Consensus 21 ~~i~~p~iv~~~~-l~~~~~~~li~at~~~sgi~Tllq~~~~ 61 (415)
T TIGR00801 21 GTVLVPLLVGLAP-LSAEQTQYLVSISLLTSGIGTLLQLFRT 61 (415)
T ss_pred HHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 577888885 35 7777766655556666666666665443
No 36
>PRK01844 hypothetical protein; Provisional
Probab=32.18 E-value=1.3e+02 Score=23.85 Aligned_cols=27 Identities=11% Similarity=0.282 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 012385 397 IFAIVCFVASLLGLLVVQKAIQEFGRA 423 (465)
Q Consensus 397 ~l~~g~~lGa~iGa~l~~~i~~~~~r~ 423 (465)
...++.++|...|-.+++|.-+++++.
T Consensus 9 l~I~~li~G~~~Gff~ark~~~k~lk~ 35 (72)
T PRK01844 9 VGVVALVAGVALGFFIARKYMMNYLQK 35 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666666667777766666553
No 37
>PRK06161 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=32.18 E-value=2.5e+02 Score=22.98 Aligned_cols=59 Identities=17% Similarity=0.099 Sum_probs=48.0
Q ss_pred HcC-CchHHHHHhHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 012385 357 QIG-TAPEVTAATCSFMVFFSSTMSAFQYLLLGMEQSGTALIFAIVCFVASLLGLLVVQK 415 (465)
Q Consensus 357 ~~g-~~~~~A~aTs~~~~~~~s~~s~~~~~~~G~i~~~~~~~l~~g~~lGa~iGa~l~~~ 415 (465)
..| -.+++++|...+.....+.............-.+.++.+..-+++|+..=+|...|
T Consensus 25 v~GPt~~DRvvA~D~l~~~~v~~i~l~~~~~~~~~~ldvalvlAll~Fl~tva~AR~~~~ 84 (89)
T PRK06161 25 LRGPRAQDRILALDTLYINAILLLLVFGIRLGSTIYFEAALLIALLGFVSTVALAKFLLR 84 (89)
T ss_pred HcCccHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344 68999999999999888888888887777777888999988899998877776544
No 38
>PRK12599 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=31.93 E-value=2.9e+02 Score=22.75 Aligned_cols=59 Identities=12% Similarity=0.127 Sum_probs=49.0
Q ss_pred HcC-CchHHHHHhHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 012385 357 QIG-TAPEVTAATCSFMVFFSSTMSAFQYLLLGMEQSGTALIFAIVCFVASLLGLLVVQK 415 (465)
Q Consensus 357 ~~g-~~~~~A~aTs~~~~~~~s~~s~~~~~~~G~i~~~~~~~l~~g~~lGa~iGa~l~~~ 415 (465)
..| -.+++.+|...+......+............-.+.++.+..-+++|+..=+|...|
T Consensus 27 i~GPt~~DRvvAld~~~~~~v~~i~lla~~~~~~~~~dvalvlall~Fvgtva~Aryl~~ 86 (91)
T PRK12599 27 ILGPTLPDRVVALDTLNTITVGIIAVLAAATGRPLYLDIAIVYALLSFLGTVAIAKYLVG 86 (91)
T ss_pred hcCccHhHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344 37899999999999999998888888777777899999999999998887776654
No 39
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=30.75 E-value=6.4e+02 Score=27.45 Aligned_cols=43 Identities=14% Similarity=-0.071 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhh
Q 012385 143 LSEPCMLLGVSIGVICNLVFPEWLVTVLFAILLAWSTFKTCTN 185 (465)
Q Consensus 143 ~l~~~~llGa~iGa~l~~~lp~~~l~~l~~~~Ll~~~~~~~~~ 185 (465)
....+..+|+.++..+...+.......+-++.++..+...++.
T Consensus 351 ~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~~~ 393 (524)
T PF05977_consen 351 VFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIALRF 393 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344556677777777777666555445555555544444433
No 40
>COG4300 CadD Predicted permease, cadmium resistance protein [Inorganic ion transport and metabolism]
Probab=30.62 E-value=2e+02 Score=26.99 Aligned_cols=53 Identities=13% Similarity=0.116 Sum_probs=37.5
Q ss_pred CccccHHHHHHHHHHHH-HHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhh
Q 012385 133 KSFIDYDIALLSEPCML-LGVSIGVICNLVFPEWLVTVLFAILLAWSTFKTCTN 185 (465)
Q Consensus 133 ~~~Id~~~~~~l~~~~l-lGa~iGa~l~~~lp~~~l~~l~~~~Ll~~~~~~~~~ 185 (465)
+...|.-..-.+.-..+ +-+..+++...++|++++.-+++..-++.+.|...+
T Consensus 34 k~~~~I~~GQyLGs~~lilaSL~~a~v~~fvp~e~I~glLGLIPi~LGik~l~~ 87 (205)
T COG4300 34 KDILHIYLGQYLGSVILILASLLFAFVLNFVPEEWILGLLGLIPIYLGIKVLIL 87 (205)
T ss_pred CcEEEEeHHHHHhHHHHHHHHHHHHHHHhhCcHHHHHHHHhHHHHHHhhHHhhc
Confidence 33344444444444433 344667788889999999999999999999987766
No 41
>PF02652 Lactate_perm: L-lactate permease; InterPro: IPR003804 L-lactate permease is an integral membrane protein probably involved in L-lactate transport.; GO: 0015129 lactate transmembrane transporter activity, 0015727 lactate transport
Probab=29.08 E-value=3.5e+02 Score=29.65 Aligned_cols=48 Identities=17% Similarity=0.160 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHhhccccchhh-hHHHHHHHHhCCChhHHHHHHHHHH
Q 012385 66 SAIAGVFCFIAASISSAGGIGGGG-LYIPILTISAGLELRTATSFSAFMV 114 (465)
Q Consensus 66 ~v~~~~~g~lag~is~~~GiGGG~-i~vPiL~~~~gl~~~~A~~ts~~~i 114 (465)
.-..++.-.+++++=++.|.|-.. +..|+|.. +|+||-.|+..+++..
T Consensus 101 ~q~lli~~~Fg~flEgaaGFGtpvAI~aplLv~-LGf~P~~Aa~l~Li~n 149 (522)
T PF02652_consen 101 VQVLLIAFGFGAFLEGAAGFGTPVAIAAPLLVA-LGFPPLQAAALCLIGN 149 (522)
T ss_pred HHHHHHHHHHHHHHHhhhcccchHHHHHHHHHH-cCCChHHHHHHHHHHc
Confidence 333444445677888889999886 55666664 9999999999998753
No 42
>PRK00523 hypothetical protein; Provisional
Probab=29.04 E-value=1.5e+02 Score=23.42 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH
Q 012385 397 IFAIVCFVASLLGLLVVQKAIQEFGR 422 (465)
Q Consensus 397 ~l~~g~~lGa~iGa~l~~~i~~~~~r 422 (465)
...++.++|...|-.+++|.-+++++
T Consensus 10 l~i~~li~G~~~Gffiark~~~k~l~ 35 (72)
T PRK00523 10 LGIPLLIVGGIIGYFVSKKMFKKQIR 35 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556666666677776666655
No 43
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=28.77 E-value=4.9e+02 Score=27.00 Aligned_cols=99 Identities=19% Similarity=0.175 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHHHhhhcccchhhhHHHHHHHcCCchHHHHHhHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHH
Q 012385 324 SNKLIFPLMALLAGILGGLFGIGGGMLISPLLLQIGTAPEVTAATCSFMVFFSSTMSAFQYLLLGMEQSGTALIFAIVCF 403 (465)
Q Consensus 324 ~~~~~~~l~g~~aG~~sGl~GIGGG~i~~P~Ll~~g~~~~~A~aTs~~~~~~~s~~s~~~~~~~G~i~~~~~~~l~~g~~ 403 (465)
.+.....+.+++.|.+.-+.++..+.++.+.+... ...-..-..+.++-.+....-.+
T Consensus 9 ~~w~i~l~ls~~~g~l~~~~~vPa~~mlG~~l~a~----------------------~v~~~~~~~l~~P~~l~~~~q~i 66 (352)
T COG3180 9 LQWFILLLLSLLGGWLLTLLHVPAAWMLGAPLLAG----------------------IVAGLRGLTLPLPRGLFKAGQVI 66 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH----------------------HHHHhccccccCChHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012385 404 VASLLGLLVVQKAIQEFGRASLIVFSVSIVMALSTVLITSF 444 (465)
Q Consensus 404 lGa~iGa~l~~~i~~~~~r~~~iv~ll~~~l~~s~v~~~~~ 444 (465)
+|..+|+++....-+..++....++.+.+....+++.+.+.
T Consensus 67 lG~~ig~~~t~s~l~~l~~~w~~~~~v~~~tl~~s~l~g~l 107 (352)
T COG3180 67 LGIMIGASLTPSVLDTLKSNWPIVLVVLLLTLLSSILLGWL 107 (352)
T ss_pred HHHHHhhhcCHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH
No 44
>PRK12612 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=28.74 E-value=3.2e+02 Score=22.21 Aligned_cols=56 Identities=5% Similarity=-0.056 Sum_probs=46.3
Q ss_pred CchHHHHHhHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 012385 360 TAPEVTAATCSFMVFFSSTMSAFQYLLLGMEQSGTALIFAIVCFVASLLGLLVVQK 415 (465)
Q Consensus 360 ~~~~~A~aTs~~~~~~~s~~s~~~~~~~G~i~~~~~~~l~~g~~lGa~iGa~l~~~ 415 (465)
-.+.+.+|...+................-..-.+.++.+++.+++|+..=+|...+
T Consensus 29 t~~DRvvalD~l~~~~v~~l~~~~~~~~~~~~~dvalvlall~FvgTva~Ar~l~~ 84 (87)
T PRK12612 29 DILTRLVISDMVFYAMALILLCLGLYNGTSIYYDIALAAGLLGFLGTIAYARIISG 84 (87)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57899999999988888888888777777777889999999999998887776543
No 45
>TIGR02185 Trep_Strep conserved hypothetical integral membrane protein TIGR02185. This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C-terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae R6.
Probab=28.21 E-value=4.9e+02 Score=24.21 Aligned_cols=31 Identities=23% Similarity=0.306 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 012385 392 SGTALIFAIVCFVASLLGLLVVQKAIQEFGR 422 (465)
Q Consensus 392 ~~~~~~l~~g~~lGa~iGa~l~~~i~~~~~r 422 (465)
......+.+.+++++.+|+.+.+|+-+|+.+
T Consensus 158 ~~~~~~~~~~t~v~~~iG~~iG~kllkKHF~ 188 (189)
T TIGR02185 158 AIWAVIMIVLTAVAGIAGVLIGKKLLKKHFE 188 (189)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3445566667777778888777777777654
No 46
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=27.83 E-value=43 Score=29.24 Aligned_cols=12 Identities=25% Similarity=0.653 Sum_probs=5.1
Q ss_pred HHHHHHhHHHHH
Q 012385 281 WILSSLQIPLAI 292 (465)
Q Consensus 281 w~~~~~~~~~~~ 292 (465)
|+++++.+.+++
T Consensus 2 W~l~~iii~~i~ 13 (130)
T PF12273_consen 2 WVLFAIIIVAIL 13 (130)
T ss_pred eeeHHHHHHHHH
Confidence 444444444333
No 47
>PRK12604 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=27.60 E-value=3.3e+02 Score=22.05 Aligned_cols=55 Identities=20% Similarity=0.184 Sum_probs=46.5
Q ss_pred CchHHHHHhHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHH
Q 012385 360 TAPEVTAATCSFMVFFSSTMSAFQYLLLGMEQSGTALIFAIVCFVASLLGLLVVQ 414 (465)
Q Consensus 360 ~~~~~A~aTs~~~~~~~s~~s~~~~~~~G~i~~~~~~~l~~g~~lGa~iGa~l~~ 414 (465)
-.+++.+|.......................-.+.++.+..-+++|+..=+|...
T Consensus 27 t~~DRvvAlD~l~~~~v~~i~l~a~~~~~~~~ldvalvlAll~Fv~tva~Aryl~ 81 (84)
T PRK12604 27 TTVDRLVAVDIMTTITTGLMVLFALYYKRMIFLDVALVYAILAFVGVIAFARYLE 81 (84)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999998888888887777788999999999999887766653
No 48
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=27.26 E-value=1.6e+02 Score=24.72 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccHH
Q 012385 141 ALLSEPCMLLGVSIGVICNLVFPEW 165 (465)
Q Consensus 141 ~~~l~~~~llGa~iGa~l~~~lp~~ 165 (465)
.+-+.++.++|+.+|-++-+.+|..
T Consensus 49 G~~~v~pil~G~~lG~WLD~~~~t~ 73 (100)
T TIGR02230 49 GWSVAIPTLLGVAVGIWLDRHYPSP 73 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 3456677788888999998888753
No 49
>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities. These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane
Probab=27.14 E-value=2.4e+02 Score=22.39 Aligned_cols=34 Identities=18% Similarity=0.174 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 012385 394 TALIFAIVCFVASLLGLLVVQKAIQEFGRASLIV 427 (465)
Q Consensus 394 ~~~~l~~g~~lGa~iGa~l~~~i~~~~~r~~~iv 427 (465)
..+.+.....++..+|..+.+++|+++.+..-.+
T Consensus 39 ~~~al~~~~~lav~~G~~l~~~ip~~~i~~~~~~ 72 (78)
T PF01169_consen 39 ATLALALATGLAVLLGSWLASRIPERYIKWVAGA 72 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 3345566778889999999999999998876433
No 50
>PF02652 Lactate_perm: L-lactate permease; InterPro: IPR003804 L-lactate permease is an integral membrane protein probably involved in L-lactate transport.; GO: 0015129 lactate transmembrane transporter activity, 0015727 lactate transport
Probab=26.83 E-value=8.7e+02 Score=26.59 Aligned_cols=47 Identities=26% Similarity=0.417 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhhhcccchhh-hHHHHHHHcCCchHHHHHhHHHHHH
Q 012385 328 IFPLMALLAGILGGLFGIGGGM-LISPLLLQIGTAPEVTAATCSFMVF 374 (465)
Q Consensus 328 ~~~l~g~~aG~~sGl~GIGGG~-i~~P~Ll~~g~~~~~A~aTs~~~~~ 374 (465)
...+.=.+.+++-|..|-|.+. +..|+|+.+|.||..|+..++....
T Consensus 103 ~lli~~~Fg~flEgaaGFGtpvAI~aplLv~LGf~P~~Aa~l~Li~n~ 150 (522)
T PF02652_consen 103 VLLIAFGFGAFLEGAAGFGTPVAIAAPLLVALGFPPLQAAALCLIGNS 150 (522)
T ss_pred HHHHHHHHHHHHHhhhcccchHHHHHHHHHHcCCChHHHHHHHHHHcC
Confidence 3334444566899999888885 5566778999999999999988653
No 51
>COG1784 Predicted membrane protein [Function unknown]
Probab=26.65 E-value=7.6e+02 Score=25.85 Aligned_cols=127 Identities=13% Similarity=0.038 Sum_probs=58.8
Q ss_pred CchhHHHHHHHHHHHHHhhhc-ccchhhhHHHHHHHcCCchH-----------HHHHhHHHHHHHHH---HHHHHHHH--
Q 012385 323 TSNKLIFPLMALLAGILGGLF-GIGGGMLISPLLLQIGTAPE-----------VTAATCSFMVFFSS---TMSAFQYL-- 385 (465)
Q Consensus 323 ~~~~~~~~l~g~~aG~~sGl~-GIGGG~i~~P~Ll~~g~~~~-----------~A~aTs~~~~~~~s---~~s~~~~~-- 385 (465)
.++..+..+.|.++|++-+++ |++++-...-.-...+-+-. .|.+......+... =++...+.
T Consensus 215 ~~~~~k~~~~gslAG~~~~~LPGvs~aqa~~la~~~~~~~~~~~fi~avs~intanavfsL~aL~~iG~~RSGv~vai~~ 294 (395)
T COG1784 215 GKRLLKSSFAGSLAGALVSFLPGVSPAQAALLASKLTGDDEDRRFITAVSGINTANAVFSLVALIAIGKPRSGVAVAIQR 294 (395)
T ss_pred ccccchhHHHHHHHHHHHHHcCCCcHHHHHHHHHHhccCCCCceEEEEEeccchHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 355666777777777777764 66655433333333333322 12222221111100 01111111
Q ss_pred HcCCccHHHHHHH-----HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012385 386 LLGMEQSGTALIF-----AIVCFVASLLGLLVVQKAIQEFGRASLIVFSVSIVMALSTVLITSFEALDIW 450 (465)
Q Consensus 386 ~~G~i~~~~~~~l-----~~g~~lGa~iGa~l~~~i~~~~~r~~~iv~ll~~~l~~s~v~~~~~g~~~~~ 450 (465)
..+.++.++.+.+ .+...++.+++.+...|+..+..++....++...++.. -+.|.+.|+....
T Consensus 295 ~~~~i~~p~~i~l~~~a~~i~~~L~~~ls~~~~~~v~~~~~s~l~a~vl~~lvil~-~~~~gf~gl~v~~ 363 (395)
T COG1784 295 SVGDITLPYLIFLVLSAALIAVALAPWLSILALLKVRFKDYSKLCAGVLLFLVILG-YLLMGFIGLGVLG 363 (395)
T ss_pred HhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHH
Confidence 2344554433322 23334555555555556666666666666554444333 5566666654443
No 52
>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family. To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.
Probab=25.97 E-value=3.4e+02 Score=25.60 Aligned_cols=43 Identities=14% Similarity=0.169 Sum_probs=32.7
Q ss_pred HHHHHHHH-HHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhh
Q 012385 143 LSEPCMLL-GVSIGVICNLVFPEWLVTVLFAILLAWSTFKTCTN 185 (465)
Q Consensus 143 ~l~~~~ll-Ga~iGa~l~~~lp~~~l~~l~~~~Ll~~~~~~~~~ 185 (465)
.+....++ .+.+++.....+|++++.-+++++-++.++|.+.+
T Consensus 33 ylG~~~Lv~~Sl~~~~~l~~ip~~wiLGlLGliPI~lGi~~l~~ 76 (191)
T PF03596_consen 33 YLGFTILVLASLLGAFGLLFIPPEWILGLLGLIPIYLGIKALFS 76 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 34444433 35667888889999999999999999999986654
No 53
>PRK12657 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=25.58 E-value=4e+02 Score=22.39 Aligned_cols=56 Identities=14% Similarity=0.134 Sum_probs=46.7
Q ss_pred CchHHHHHhHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 012385 360 TAPEVTAATCSFMVFFSSTMSAFQYLLLGMEQSGTALIFAIVCFVASLLGLLVVQK 415 (465)
Q Consensus 360 ~~~~~A~aTs~~~~~~~s~~s~~~~~~~G~i~~~~~~~l~~g~~lGa~iGa~l~~~ 415 (465)
-.+.+.+|-..+.....+..+..........-.+.++.++.-+++|+..=+|...|
T Consensus 33 t~~DRivAlD~l~~~~v~~i~l~a~~~~~~~~ldvaLvlAll~Fv~tva~ARyl~~ 88 (100)
T PRK12657 33 TTADRVVTFDTTSAVVMSIVGVLSVLMGTVSFLDSIMLIAIISFVSSVSISRFIGG 88 (100)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 56889999999988888888888777777777889999999999999888777654
No 54
>PRK08381 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=25.34 E-value=3.8e+02 Score=21.92 Aligned_cols=55 Identities=11% Similarity=0.057 Sum_probs=46.6
Q ss_pred CchHHHHHhHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHH
Q 012385 360 TAPEVTAATCSFMVFFSSTMSAFQYLLLGMEQSGTALIFAIVCFVASLLGLLVVQ 414 (465)
Q Consensus 360 ~~~~~A~aTs~~~~~~~s~~s~~~~~~~G~i~~~~~~~l~~g~~lGa~iGa~l~~ 414 (465)
-.+++..|.........+.............-.+.++.+..-+++|+..=+|...
T Consensus 30 t~~DRvvAlD~l~~~~v~~i~l~~~~~~~~~~ldvalv~All~Fv~tva~Ary~~ 84 (87)
T PRK08381 30 TLADRIVGLNTITTKVVGIIAILSVLWEEYYLLDLAIVLLMVNAVGGLILAKYME 84 (87)
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999988888888888777789999999999999887766654
No 55
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=25.26 E-value=1e+02 Score=30.78 Aligned_cols=43 Identities=16% Similarity=0.213 Sum_probs=23.4
Q ss_pred HHHHHHHHHhhcc---HHHHHHHHHHHHHHHHHHHHhhhcchhhhh
Q 012385 151 GVSIGVICNLVFP---EWLVTVLFAILLAWSTFKTCTNGFSFWKLE 193 (465)
Q Consensus 151 Ga~iGa~l~~~lp---~~~l~~l~~~~Ll~~~~~~~~~~~~~~k~e 193 (465)
|...++..+.+.| ..++.++++++|++.=+++.++.++.||.|
T Consensus 248 gtAAtaA~aaF~Pcgiaalvllil~vvliiLYiWlyrrRK~swkhe 293 (295)
T TIGR01478 248 ERAASAATSTFLPYGIAALVLIILTVVLIILYIWLYRRRKKSWKHE 293 (295)
T ss_pred chHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 3334444444444 234555566666666666666656666655
No 56
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=23.82 E-value=2.9e+02 Score=20.02 Aligned_cols=46 Identities=15% Similarity=0.123 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccH-HHHHHHHHHHHHHHHHHHHhh
Q 012385 140 IALLSEPCMLLGVSIGVICNLVFPE-WLVTVLFAILLAWSTFKTCTN 185 (465)
Q Consensus 140 ~~~~l~~~~llGa~iGa~l~~~lp~-~~l~~l~~~~Ll~~~~~~~~~ 185 (465)
+..-+..+.++|..+|-++-++++. .+...+..++=+..+.+...|
T Consensus 6 lg~~~~~~i~~g~~~G~~lD~~~~t~p~~~~~g~llG~~~g~~~~~~ 52 (55)
T PF09527_consen 6 LGFTMAAPILVGFFLGYWLDKWFGTSPWFTLIGLLLGIAAGFYNVYR 52 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888888999998888877 444444444334455544443
No 57
>PF05052 MerE: MerE protein; InterPro: IPR007746 The prokaryotic MerE (or URF-1) protein is part of the mercury resistance operon often located on plasmids or transposons [, ]. It has been suggested that MerE is a broad mercury transporter mediating transport across the bacterial membrane [].
Probab=23.14 E-value=2.6e+02 Score=22.14 Aligned_cols=34 Identities=18% Similarity=0.232 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHH
Q 012385 145 EPCMLLGVSIGVICNLVFPEWLVTVLFAILLAWSTFK 181 (465)
Q Consensus 145 ~~~~llGa~iGa~l~~~lp~~~l~~l~~~~Ll~~~~~ 181 (465)
+...+.|+..|+++..+ |.+..+....+++.++.
T Consensus 35 l~~vLaGTaaGafl~e~---w~iaal~l~~LF~lsl~ 68 (75)
T PF05052_consen 35 LAPVLAGTAAGAFLGEH---WVIAALTLTGLFVLSLT 68 (75)
T ss_pred HHHHHccchHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 33455566667666553 44544444444444443
No 58
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=22.91 E-value=1.3e+03 Score=27.29 Aligned_cols=32 Identities=16% Similarity=-0.029 Sum_probs=21.6
Q ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHhhccH
Q 012385 133 KSFIDYDIALLSEPCMLLGVSIGVICNLVFPE 164 (465)
Q Consensus 133 ~~~Id~~~~~~l~~~~llGa~iGa~l~~~lp~ 164 (465)
.+..+=........+.++|..+|.++.....-
T Consensus 142 ~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~ 173 (1140)
T PRK06814 142 LLGANALVEAGTFIAILLGTIIGGLATISGNF 173 (1140)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 44444445556667888888888888776543
No 59
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=22.65 E-value=65 Score=26.81 Aligned_cols=19 Identities=26% Similarity=0.160 Sum_probs=8.7
Q ss_pred hhHHHHHHHHHHHHHHHHHh
Q 012385 6 SKTQNFLTSVTLFLAICITL 25 (465)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~ 25 (465)
||+.++|.++ +++++++++
T Consensus 3 SK~~llL~l~-LA~lLlisS 21 (95)
T PF07172_consen 3 SKAFLLLGLL-LAALLLISS 21 (95)
T ss_pred hhHHHHHHHH-HHHHHHHHh
Confidence 5665555543 333333443
No 60
>PRK00968 tetrahydromethanopterin S-methyltransferase subunit D; Provisional
Probab=22.15 E-value=4.1e+02 Score=25.56 Aligned_cols=25 Identities=40% Similarity=0.880 Sum_probs=17.5
Q ss_pred HHHHHHHh-hccccchhhhHHHHHHH
Q 012385 73 CFIAASIS-SAGGIGGGGLYIPILTI 97 (465)
Q Consensus 73 g~lag~is-~~~GiGGG~i~vPiL~~ 97 (465)
+|++|.++ .+.|+||+.++..++..
T Consensus 141 sfvsGvIGg~lGGiGG~LiY~al~~~ 166 (240)
T PRK00968 141 SFVSGVIGGALGGIGGALIYIALLEL 166 (240)
T ss_pred eeehhhhhhhhcccchHHHHHHHHHh
Confidence 34444442 34689999999999986
No 61
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=22.03 E-value=2.7e+02 Score=26.96 Aligned_cols=57 Identities=19% Similarity=0.405 Sum_probs=0.0
Q ss_pred cccCCCChhhHHHHHHHHHHHHHHHHhcCCCCCCCcccccccChhHHHHHHHhHHHHHHHHHHHHHHhhh
Q 012385 235 SNQLSFPWMKLGVLVLVWFCFSVLYLFRGNRDGQGIITMKPCGVGYWILSSLQIPLAIAFTAWILCRKES 304 (465)
Q Consensus 235 ~~~~~~p~~~~~~~~~~~~~~~~~~ll~g~~~~~s~i~i~~c~~~Yw~~~~~~~~~~~~~~~~~~~~~~~ 304 (465)
+++...+|.-++.++..-++++++-++-|. .|||++..+.+.++..+..+-..-.+.
T Consensus 22 k~dp~l~~~ml~a~l~~~~v~v~ig~l~~~-------------~~~~~i~gi~~g~l~am~vl~rra~ra 78 (224)
T PF13829_consen 22 KEDPKLPWLMLGAFLGPIAVFVLIGLLFGS-------------WWYWLIIGILLGLLAAMIVLSRRAQRA 78 (224)
T ss_pred HHCcchHHHHHHHHHHHHHHHHHHHHHHcc-------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
No 62
>TIGR00753 undec_PP_bacA undecaprenyl-diphosphatase UppP. This is a family of small, highly hydrophobic proteins. Overexpression of this protein in Escherichia coli is associated with bacitracin resistance, and the protein was originally proposed to be an undecaprenol kinase and called bacA. It is now known to be an undecaprenyl pyrophosphate phosphatase (EC 3.6.1.27) and is renamed UppP.
Probab=21.71 E-value=7.8e+02 Score=24.23 Aligned_cols=48 Identities=15% Similarity=0.074 Sum_probs=35.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH--HHHHHHHHHHHHHHHh
Q 012385 137 DYDIALLSEPCMLLGVSIGVICNLVFPEWLVT--VLFAILLAWSTFKTCT 184 (465)
Q Consensus 137 d~~~~~~l~~~~llGa~iGa~l~~~lp~~~l~--~l~~~~Ll~~~~~~~~ 184 (465)
|++..+.+.+++++.+++|..+-..+++.... ...++.++..+..++.
T Consensus 77 ~~~l~~~iii~tiP~~i~Gl~~~~~i~~~l~~~~~~v~~~Lii~gilL~~ 126 (255)
T TIGR00753 77 DLLLLKLILLGLIPTVVLGLLFKDLIKSLLFNFLLTVVIALIVGAGLLIL 126 (255)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 67888899999999999998888776554322 3556666666665554
No 63
>PF13491 DUF4117: Domain of unknown function (DUF4117)
Probab=21.58 E-value=5.8e+02 Score=22.69 Aligned_cols=34 Identities=9% Similarity=0.081 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Q 012385 143 LSEPCMLLGVSIGVICNLVFPEWLVTVLFAILLA 176 (465)
Q Consensus 143 ~l~~~~llGa~iGa~l~~~lp~~~l~~l~~~~Ll 176 (465)
....++++|..+...+.+.+...--..++...++
T Consensus 119 ~~~~GG~iG~~l~~~l~~~lG~~Ga~iil~~~~~ 152 (171)
T PF13491_consen 119 PYGGGGIIGYLLASLLVKLLGKVGALIILLVLLL 152 (171)
T ss_pred CCCCCCHhHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3457788888888888777766544443333333
No 64
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=21.51 E-value=2.3e+02 Score=30.66 Aligned_cols=60 Identities=13% Similarity=0.297 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 012385 397 IFAIVCFVASLLGLLVVQKAIQEFGRASLIVFSVSIVMALSTVLITSFEALDIWRDYTSGN 457 (465)
Q Consensus 397 ~l~~g~~lGa~iGa~l~~~i~~~~~r~~~iv~ll~~~l~~s~v~~~~~g~~~~~~~~~~g~ 457 (465)
.....-.+|+.+|+.++..+.++++|+ -.+++-.+...++++.+...-..+..+.+.-||
T Consensus 64 ~~vs~f~iG~~~Gs~~~~~la~~~GRK-~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR 123 (485)
T KOG0569|consen 64 LIVSIFFIGGMIGSFSSGLLADRFGRK-NALLLSNLLAVLAALLMGLSKSAPSFEMLILGR 123 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcch-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
No 65
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=21.05 E-value=6.7e+02 Score=23.26 Aligned_cols=102 Identities=15% Similarity=0.140 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHhhhcc----------cchhhhHHHHHHHcCCchHHHHHhHHHHHHHHHHHHHHHH-HHcCCcc--H--
Q 012385 328 IFPLMALLAGILGGLFG----------IGGGMLISPLLLQIGTAPEVTAATCSFMVFFSSTMSAFQY-LLLGMEQ--S-- 392 (465)
Q Consensus 328 ~~~l~g~~aG~~sGl~G----------IGGG~i~~P~Ll~~g~~~~~A~aTs~~~~~~~s~~s~~~~-~~~G~i~--~-- 392 (465)
.....|+.+|++-|+++ ++-+.++-|...--=.+..--...+.++....|+.+++.| +..+++. |
T Consensus 22 ~~~~iGf~gGliWs~v~yl~y~f~FT~v~P~~ll~Pf~~g~wk~t~~G~~igi~~~gv~Si~aAllY~~~l~k~~g~W~G 101 (173)
T PF11085_consen 22 KVLEIGFFGGLIWSLVRYLAYFFHFTEVGPNFLLEPFALGDWKNTWLGNLIGIVFIGVFSIVAALLYYALLKKFKGPWPG 101 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccChhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchH
Confidence 44567888888887654 4555666665542112222233334444555555555544 4444432 2
Q ss_pred ---HHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHH
Q 012385 393 ---GTALIFAIVCFVASLLG-LLVVQKAIQEFGRASLIVFS 429 (465)
Q Consensus 393 ---~~~~~l~~g~~lGa~iG-a~l~~~i~~~~~r~~~iv~l 429 (465)
..+++.++-.+++-..+ .+-..+++..+.-..+-+++
T Consensus 102 i~YG~~~W~ivF~~lnP~fp~~~~~~~l~~nTiiT~~Ciyi 142 (173)
T PF11085_consen 102 ILYGLAWWAIVFFVLNPIFPMIKPVTELDWNTIITTLCIYI 142 (173)
T ss_pred HHHHHHHHHHHHHHhcccccCChhhhhCchhHHHHHHHHHH
Confidence 23333333333443332 23455666666655554444
No 66
>PF03613 EIID-AGA: PTS system mannose/fructose/sorbose family IID component; InterPro: IPR004704 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IID subunits of this family of PTS transporters.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane
Probab=20.84 E-value=1.6e+02 Score=29.15 Aligned_cols=40 Identities=25% Similarity=0.538 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHHHhhhccccCCCCCCcCcccccCCchhHHHHHHHHHHHHHhhhccc
Q 012385 287 QIPLAIAFTAWILCRKESTQYHAPNQQGIGDLTRRGTSNKLIFPLMALLAGILGGLFGI 345 (465)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~aG~~sGl~GI 345 (465)
.+|+++.+..|++.++++. +..+..+.-+++|++.+.+||
T Consensus 224 lLpl~~~~~~y~ll~kk~~-------------------~~~~~i~~~~vi~iv~~~~Gi 263 (264)
T PF03613_consen 224 LLPLLLTLLVYWLLKKKKV-------------------SPTKLILIIIVIGIVGAALGI 263 (264)
T ss_pred HHHHHHHHHHHHHHhcCCC-------------------CHHHHHHHHHHHHHHHHHhcc
Confidence 5677777777777766542 345566777888888888885
No 67
>PF09835 DUF2062: Uncharacterized protein conserved in bacteria (DUF2062); InterPro: IPR018639 This domain, found in various prokaryotic proteins, has no known function. It is found at the C-terminal of family 2 glycosyltransferase proteins, in addition to proteins of unknown function.
Probab=20.60 E-value=5.9e+02 Score=22.45 Aligned_cols=48 Identities=10% Similarity=-0.131 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHhhccccchhhhHHHHHHHHhCCChhHHHHHHHHHHHH
Q 012385 66 SAIAGVFCFIAASISSAGGIGGGGLYIPILTISAGLELRTATSFSAFMVTG 116 (465)
Q Consensus 66 ~v~~~~~g~lag~is~~~GiGGG~i~vPiL~~~~gl~~~~A~~ts~~~i~~ 116 (465)
...++.+|+..|++ =.. |...+..-.+..++..+...|...+.+..-.
T Consensus 22 iA~g~AiG~fig~~-P~~--g~~~~l~~~la~~~r~N~~aa~~~~~i~nPl 69 (154)
T PF09835_consen 22 IALGFAIGVFIGFL-PIF--GLQTVLAIALALLFRLNKPAAILGTWISNPL 69 (154)
T ss_pred HHHHHHHHHHHHHH-hcc--hHHHHHHHHHHHHHHccHHHHHHHHHHHhHH
Confidence 34466677666644 222 5566666666767787777777666554433
Done!