Query 012385
Match_columns 465
No_of_seqs 274 out of 1871
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 08:25:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012385.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012385hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2w2e_A AQY1, aquaporin, aquapo 19.3 2.6E+02 0.0089 26.5 7.4 28 133-160 122-149 (279)
2 3gd8_A Aquaporin-4; proton exc 10.3 3.5E+02 0.012 24.5 5.4 34 383-416 72-105 (223)
3 1col_A Colicin A; antibacteria 10.1 2.3E+02 0.008 25.6 3.9 25 399-423 178-202 (204)
4 2o9g_A Aquaporin Z; integral m 10.0 3.9E+02 0.013 24.4 5.6 35 382-416 71-105 (234)
5 1j4n_A Aquaporin 1; membrane p 9.6 4E+02 0.014 25.0 5.6 35 382-416 83-117 (271)
6 3d9s_A Aquaporin-5, AQP-5; aqu 9.5 4.6E+02 0.016 24.5 6.0 35 382-416 75-109 (266)
7 2w2e_A AQY1, aquaporin, aquapo 9.4 4.5E+02 0.016 24.7 6.0 35 382-416 117-151 (279)
8 3c02_A Aquaglyceroporin; membr 9.4 4.2E+02 0.014 24.6 5.7 36 382-417 75-110 (258)
9 3cn5_A Aquaporin; membrane pro 9.2 5.8E+02 0.02 24.3 6.7 35 382-416 129-163 (304)
10 3iyz_A Aquaporin-4; water tran 9.0 4.1E+02 0.014 25.9 5.6 34 383-416 120-153 (340)
No 1
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A*
Probab=19.27 E-value=2.6e+02 Score=26.47 Aligned_cols=28 Identities=7% Similarity=-0.178 Sum_probs=25.1
Q ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHh
Q 012385 133 KSFIDYDIALLSEPCMLLGVSIGVICNL 160 (465)
Q Consensus 133 ~~~Id~~~~~~l~~~~llGa~iGa~l~~ 160 (465)
.+.++|+.+....+.-++|+++|+.+..
T Consensus 122 ~g~~~~~~~~~YiiAQ~lGA~~ga~lv~ 149 (279)
T 2w2e_A 122 ARAIPPFRGILMAFTQIVAGMAAAGAAS 149 (279)
T ss_dssp TTSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5779999999999999999999998764
No 2
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens}
Probab=10.32 E-value=3.5e+02 Score=24.49 Aligned_cols=34 Identities=3% Similarity=0.081 Sum_probs=28.8
Q ss_pred HHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012385 383 QYLLLGMEQSGTALIFAIVCFVASLLGLLVVQKA 416 (465)
Q Consensus 383 ~~~~~G~i~~~~~~~l~~g~~lGa~iGa~l~~~i 416 (465)
.....|+++|.......+.-++|+.+|+.++.-+
T Consensus 72 a~~~~g~~~~~~~~~Yi~AQ~lGA~~ga~lv~~~ 105 (223)
T 3gd8_A 72 AMVCTRKISIAKSVFYIAAQCLGAIIGAGILYLV 105 (223)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456799999999999999999999999887643
No 3
>1col_A Colicin A; antibacterial protein; 2.40A {Escherichia coli} SCOP: f.1.1.1
Probab=10.09 E-value=2.3e+02 Score=25.63 Aligned_cols=25 Identities=16% Similarity=0.143 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHH
Q 012385 399 AIVCFVASLLGLLVVQKAIQEFGRA 423 (465)
Q Consensus 399 ~~g~~lGa~iGa~l~~~i~~~~~r~ 423 (465)
++.+.+|+++...++.++++...|.
T Consensus 178 il~a~v~s~Idd~~v~kiN~~ii~~ 202 (204)
T 1col_A 178 LLAAVVGALIDDKFADALNNEIIRP 202 (204)
T ss_dssp HHHHHHHHHHCTHHHHHHHHHTTC-
T ss_pred HHHHHHHHHhCHHHHHHHHHHhccC
Confidence 5677888888888888888776553
No 4
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A*
Probab=10.03 E-value=3.9e+02 Score=24.41 Aligned_cols=35 Identities=9% Similarity=0.048 Sum_probs=29.2
Q ss_pred HHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012385 382 FQYLLLGMEQSGTALIFAIVCFVASLLGLLVVQKA 416 (465)
Q Consensus 382 ~~~~~~G~i~~~~~~~l~~g~~lGa~iGa~l~~~i 416 (465)
+.....|+++|.......+.-++|+.+|+.++.-+
T Consensus 71 la~~~~g~~~~~~~~~Yi~aQ~lGa~~ga~l~~~~ 105 (234)
T 2o9g_A 71 IGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLI 105 (234)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567799999999999999999999999887543
No 5
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A
Probab=9.58 E-value=4e+02 Score=24.97 Aligned_cols=35 Identities=14% Similarity=0.188 Sum_probs=29.5
Q ss_pred HHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012385 382 FQYLLLGMEQSGTALIFAIVCFVASLLGLLVVQKA 416 (465)
Q Consensus 382 ~~~~~~G~i~~~~~~~l~~g~~lGa~iGa~l~~~i 416 (465)
+.....|+++|..+....+.-++|+.+|+.++..+
T Consensus 83 la~~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~ 117 (271)
T 1j4n_A 83 LGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGI 117 (271)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567799999999999999999999999887654
No 6
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens}
Probab=9.47 E-value=4.6e+02 Score=24.50 Aligned_cols=35 Identities=11% Similarity=0.123 Sum_probs=29.6
Q ss_pred HHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012385 382 FQYLLLGMEQSGTALIFAIVCFVASLLGLLVVQKA 416 (465)
Q Consensus 382 ~~~~~~G~i~~~~~~~l~~g~~lGa~iGa~l~~~i 416 (465)
+.....|+++|.......+.-++|+.+|+.++..+
T Consensus 75 la~~~~g~~~~~~~~~Yi~AQ~lGA~~ga~l~~~~ 109 (266)
T 3d9s_A 75 LALLVGNQISLLRAFFYVAAQLVGAIAGAGILYGV 109 (266)
T ss_dssp HHHHHTSSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567799999999999999999999999887654
No 7
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A*
Probab=9.40 E-value=4.5e+02 Score=24.74 Aligned_cols=35 Identities=11% Similarity=0.083 Sum_probs=28.6
Q ss_pred HHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012385 382 FQYLLLGMEQSGTALIFAIVCFVASLLGLLVVQKA 416 (465)
Q Consensus 382 ~~~~~~G~i~~~~~~~l~~g~~lGa~iGa~l~~~i 416 (465)
+.....|+++|..+....+.-++|+.+|+.++.-+
T Consensus 117 la~~~~g~~~~~~~~~YiiAQ~lGA~~ga~lv~~~ 151 (279)
T 2w2e_A 117 LALVLARAIPPFRGILMAFTQIVAGMAAAGAASAM 151 (279)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567789999999999999999999998877643
No 8
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum}
Probab=9.39 E-value=4.2e+02 Score=24.58 Aligned_cols=36 Identities=6% Similarity=0.040 Sum_probs=30.3
Q ss_pred HHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 012385 382 FQYLLLGMEQSGTALIFAIVCFVASLLGLLVVQKAI 417 (465)
Q Consensus 382 ~~~~~~G~i~~~~~~~l~~g~~lGa~iGa~l~~~i~ 417 (465)
+.....|+++|..+....+.-++|+.+|+.++.-+-
T Consensus 75 la~~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~ 110 (258)
T 3c02_A 75 IGLSSINKFDLKKIPVYFFAQLLGAFVGTSTVYGLY 110 (258)
T ss_dssp HHHHHTTSSCGGGHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 445677999999999999999999999998876553
No 9
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A
Probab=9.17 E-value=5.8e+02 Score=24.34 Aligned_cols=35 Identities=20% Similarity=0.278 Sum_probs=30.1
Q ss_pred HHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012385 382 FQYLLLGMEQSGTALIFAIVCFVASLLGLLVVQKA 416 (465)
Q Consensus 382 ~~~~~~G~i~~~~~~~l~~g~~lGa~iGa~l~~~i 416 (465)
+.....|+++|..+....+.-++|+.+|+.++.-+
T Consensus 129 la~~l~g~~~~~~~~~YiiAQ~lGAi~Ga~lv~~~ 163 (304)
T 3cn5_A 129 FGLFLARKVELLRALVYMIAQCLGAICGVGLVKAF 163 (304)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567899999999999999999999999888754
No 10
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=9.04 E-value=4.1e+02 Score=25.94 Aligned_cols=34 Identities=3% Similarity=0.083 Sum_probs=28.5
Q ss_pred HHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012385 383 QYLLLGMEQSGTALIFAIVCFVASLLGLLVVQKA 416 (465)
Q Consensus 383 ~~~~~G~i~~~~~~~l~~g~~lGa~iGa~l~~~i 416 (465)
..+..|.++|..++..++.-++|+.+|+.++..+
T Consensus 120 al~l~G~~~~~~~~~YiiAQ~lGA~~GA~lv~~~ 153 (340)
T 3iyz_A 120 AMVCTRKISIAKSVFYITAQCLGAIIGAGILYLV 153 (340)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556799999999999999999999999887654
Done!