Query 012385
Match_columns 465
No_of_seqs 274 out of 1871
Neff 7.2
Searched_HMMs 13730
Date Mon Mar 25 08:25:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012385.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/012385hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ymga1 f.19.1.1 (A:6-239) Aqu 13.4 1.2E+02 0.0088 25.5 5.6 35 382-416 68-102 (234)
2 d1cola_ f.1.1.1 (A:) Colicin A 12.7 58 0.0042 27.3 3.0 22 399-420 174-195 (197)
3 d1ymga1 f.19.1.1 (A:6-239) Aqu 10.3 1.3E+02 0.0095 25.2 4.7 28 133-160 73-100 (234)
4 d1fx8a_ f.19.1.1 (A:) Glycerol 9.2 2.2E+02 0.016 24.0 5.9 36 381-416 67-102 (254)
5 d1rkla_ f.23.30.1 (A:) Oligosa 9.1 1.8E+02 0.013 16.8 3.4 26 432-457 10-35 (36)
6 d2yvxa3 f.57.1.1 (A:276-448) M 8.5 1.9E+02 0.014 23.3 4.8 47 333-386 119-166 (173)
7 d1j4na_ f.19.1.1 (A:) Aquapori 8.0 2.4E+02 0.017 23.6 5.6 36 382-417 83-118 (249)
8 d1rc2a_ f.19.1.1 (A:) Aquapori 6.6 2E+02 0.014 23.7 4.2 34 384-417 70-103 (231)
9 d1rc2a_ f.19.1.1 (A:) Aquapori 5.3 2.5E+02 0.018 23.0 4.1 28 133-160 73-100 (231)
10 d1j4na_ f.19.1.1 (A:) Aquapori 5.1 3.2E+02 0.023 22.7 4.7 28 133-160 88-115 (249)
No 1
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]}
Probab=13.41 E-value=1.2e+02 Score=25.49 Aligned_cols=35 Identities=14% Similarity=0.263 Sum_probs=30.4
Q ss_pred HHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012385 382 FQYLLLGMEQSGTALIFAIVCFVASLLGLLVVQKA 416 (465)
Q Consensus 382 ~~~~~~G~i~~~~~~~l~~g~~lGa~iGa~l~~~i 416 (465)
+.+...|+++|.......+.-++|+.+|+.++..+
T Consensus 68 la~~~~g~i~~~~~~~Yi~aQ~lGa~~ga~l~~~~ 102 (234)
T d1ymga1 68 FAFLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSV 102 (234)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCCChhheeeeeehHHHHHHHHHHHHHHH
Confidence 44667899999999999999999999999888654
No 2
>d1cola_ f.1.1.1 (A:) Colicin A {Escherichia coli [TaxId: 562]}
Probab=12.66 E-value=58 Score=27.27 Aligned_cols=22 Identities=14% Similarity=0.155 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHH
Q 012385 399 AIVCFVASLLGLLVVQKAIQEF 420 (465)
Q Consensus 399 ~~g~~lGa~iGa~l~~~i~~~~ 420 (465)
++.+++|+++...++.++++..
T Consensus 174 li~~~v~alIdd~~~~~iN~~l 195 (197)
T d1cola_ 174 LLAAVVGALIDDKFADALNNEI 195 (197)
T ss_dssp HHHHHHHHHHCTHHHHHHHHHT
T ss_pred HHHHHHHHHhhHHHHHHHHHHH
Confidence 5667778888777777776654
No 3
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]}
Probab=10.26 E-value=1.3e+02 Score=25.24 Aligned_cols=28 Identities=21% Similarity=0.102 Sum_probs=25.0
Q ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHh
Q 012385 133 KSFIDYDIALLSEPCMLLGVSIGVICNL 160 (465)
Q Consensus 133 ~~~Id~~~~~~l~~~~llGa~iGa~l~~ 160 (465)
.+.++|+......+.-++|+.+|+.+..
T Consensus 73 ~g~i~~~~~~~Yi~aQ~lGa~~ga~l~~ 100 (234)
T d1ymga1 73 GSQMSLLRAICYMVAQLLGAVAGAAVLY 100 (234)
T ss_dssp TTSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCChhheeeeeehHHHHHHHHHHHHH
Confidence 6789999999999999999999987653
No 4
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]}
Probab=9.23 E-value=2.2e+02 Score=23.98 Aligned_cols=36 Identities=8% Similarity=0.098 Sum_probs=30.1
Q ss_pred HHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012385 381 AFQYLLLGMEQSGTALIFAIVCFVASLLGLLVVQKA 416 (465)
Q Consensus 381 ~~~~~~~G~i~~~~~~~l~~g~~lGa~iGa~l~~~i 416 (465)
++.....|+++|.......+.-++|+.+|+.+..-+
T Consensus 67 Tla~~i~g~~~~~~~~~Yi~aQ~lGa~~ga~l~~~~ 102 (254)
T d1fx8a_ 67 TIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGL 102 (254)
T ss_dssp HHHHHHHSCCCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 344667899999999999999999999999887644
No 5
>d1rkla_ f.23.30.1 (A:) Oligosaccharyltransferase subunit ost4p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=9.06 E-value=1.8e+02 Score=16.81 Aligned_cols=26 Identities=12% Similarity=0.147 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCC
Q 012385 432 IVMALSTVLITSFEALDIWRDYTSGN 457 (465)
Q Consensus 432 ~~l~~s~v~~~~~g~~~~~~~~~~g~ 457 (465)
+++.+..+.|+..-+++++..-.+|+
T Consensus 10 ~~i~fgi~mmtliviyh~~~st~s~k 35 (36)
T d1rkla_ 10 LAITFGIVMMTLIVIYHAVDSTMSPK 35 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCCCC
T ss_pred EEeehhHHHHHHHHHHhhhccccCCC
Confidence 44566677787777888877655554
No 6
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=8.48 E-value=1.9e+02 Score=23.27 Aligned_cols=47 Identities=23% Similarity=0.474 Sum_probs=31.6
Q ss_pred HHHHHHHhhhcccchhhhHHHHHH-HcCCchHHHHHhHHHHHHHHHHHHHHHHHH
Q 012385 333 ALLAGILGGLFGIGGGMLISPLLL-QIGTAPEVTAATCSFMVFFSSTMSAFQYLL 386 (465)
Q Consensus 333 g~~aG~~sGl~GIGGG~i~~P~Ll-~~g~~~~~A~aTs~~~~~~~s~~s~~~~~~ 386 (465)
-+..-.+++++| ...|+++ .+|.||.. +++-+....+.+.+...|..
T Consensus 119 l~~~~~ia~~~G-----~~lPlll~klg~DPA~--aS~P~itti~Di~g~~iyf~ 166 (173)
T d2yvxa3 119 LVLIVFFANLVG-----AMLPFLLRRLGVDPAL--VSNPLVATLSDVTGLLIYLS 166 (173)
T ss_dssp HHHHHHHHHHHH-----HHHHHHHHHTSCCGGG--SCSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHhCCChhh--hhhhHHHHHHHHHHHHHHHH
Confidence 334445566665 4568875 79999965 45566777788888877754
No 7
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.05 E-value=2.4e+02 Score=23.61 Aligned_cols=36 Identities=14% Similarity=0.177 Sum_probs=30.2
Q ss_pred HHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 012385 382 FQYLLLGMEQSGTALIFAIVCFVASLLGLLVVQKAI 417 (465)
Q Consensus 382 ~~~~~~G~i~~~~~~~l~~g~~lGa~iGa~l~~~i~ 417 (465)
+.....|++++.......+.-++|+.+|+.+...+-
T Consensus 83 la~~~~g~i~~~~~~~Yi~aQ~lGa~~g~~~~~~~~ 118 (249)
T d1j4na_ 83 LGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGIT 118 (249)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhccccchhheeeeeeHHHHHHHHHHhhheeec
Confidence 345667999999999999999999999988876553
No 8
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]}
Probab=6.60 E-value=2e+02 Score=23.73 Aligned_cols=34 Identities=9% Similarity=0.042 Sum_probs=29.3
Q ss_pred HHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 012385 384 YLLLGMEQSGTALIFAIVCFVASLLGLLVVQKAI 417 (465)
Q Consensus 384 ~~~~G~i~~~~~~~l~~g~~lGa~iGa~l~~~i~ 417 (465)
....|+++|.......+.-++|+.+|+.+..-+.
T Consensus 70 ~~~~g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~i~ 103 (231)
T d1rc2a_ 70 LWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIA 103 (231)
T ss_dssp HHHTTCSCTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4568999999999999999999999998876553
No 9
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]}
Probab=5.29 E-value=2.5e+02 Score=22.98 Aligned_cols=28 Identities=4% Similarity=-0.162 Sum_probs=25.1
Q ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHh
Q 012385 133 KSFIDYDIALLSEPCMLLGVSIGVICNL 160 (465)
Q Consensus 133 ~~~Id~~~~~~l~~~~llGa~iGa~l~~ 160 (465)
.+.++|+.+....+.-++|+.+|+.+..
T Consensus 73 ~g~~~~~~~~~Yi~aQ~lGa~~g~~l~~ 100 (231)
T d1rc2a_ 73 GGRFPAKEVVGYVIAQVVGGIVAAALLY 100 (231)
T ss_dssp TTCSCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5779999999999999999999998754
No 10
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.06 E-value=3.2e+02 Score=22.67 Aligned_cols=28 Identities=11% Similarity=-0.037 Sum_probs=24.8
Q ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHh
Q 012385 133 KSFIDYDIALLSEPCMLLGVSIGVICNL 160 (465)
Q Consensus 133 ~~~Id~~~~~~l~~~~llGa~iGa~l~~ 160 (465)
.+.++|+......+.-++|+.+|+.+..
T Consensus 88 ~g~i~~~~~~~Yi~aQ~lGa~~g~~~~~ 115 (249)
T d1j4na_ 88 SCQISVLRAIMYIIAQCVGAIVATAILS 115 (249)
T ss_dssp TTSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhheeeeeeHHHHHHHHHHhhhe
Confidence 5789999999999999999999987654
Done!