Query 012386
Match_columns 465
No_of_seqs 200 out of 909
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 02:06:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012386.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012386hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02405 hexokinase 100.0 2E-117 5E-122 927.7 48.7 464 1-464 1-497 (497)
2 PLN02596 hexokinase-like 100.0 7E-114 2E-118 898.8 48.0 451 1-458 2-486 (490)
3 PLN02362 hexokinase 100.0 5E-114 1E-118 905.1 46.6 459 1-460 1-502 (509)
4 PLN02914 hexokinase 100.0 1E-110 3E-115 874.6 42.8 425 34-459 34-490 (490)
5 KOG1369 Hexokinase [Carbohydra 100.0 8E-102 2E-106 795.7 37.3 415 32-461 22-472 (474)
6 PTZ00107 hexokinase; Provision 100.0 2E-100 5E-105 796.5 43.3 405 36-458 6-462 (464)
7 COG5026 Hexokinase [Carbohydra 100.0 4.6E-87 9.9E-92 668.1 37.0 413 33-459 13-462 (466)
8 PF00349 Hexokinase_1: Hexokin 100.0 3.5E-56 7.6E-61 420.9 21.0 202 36-242 2-206 (206)
9 PF03727 Hexokinase_2: Hexokin 100.0 2.7E-47 5.9E-52 370.5 19.3 211 244-458 1-243 (243)
10 PRK13310 N-acetyl-D-glucosamin 99.9 9.1E-25 2E-29 219.1 24.3 268 96-453 1-300 (303)
11 TIGR00744 ROK_glcA_fam ROK fam 99.9 4.3E-24 9.2E-29 215.4 24.3 284 98-454 1-309 (318)
12 PRK09698 D-allose kinase; Prov 99.9 3.5E-23 7.6E-28 207.5 26.3 271 94-454 3-295 (302)
13 PRK09557 fructokinase; Reviewe 99.9 3.1E-23 6.8E-28 207.9 24.3 268 96-453 1-299 (301)
14 PRK05082 N-acetylmannosamine k 99.9 9.5E-23 2E-27 203.4 24.3 263 97-453 3-286 (291)
15 COG1940 NagC Transcriptional r 99.9 1E-22 2.2E-27 205.3 24.2 279 93-455 4-307 (314)
16 PRK12408 glucokinase; Provisio 99.9 3.7E-22 8E-27 203.2 20.3 272 90-453 10-331 (336)
17 PRK00292 glk glucokinase; Prov 99.9 4.6E-21 9.9E-26 193.6 23.3 266 96-453 3-313 (316)
18 PRK13311 N-acetyl-D-glucosamin 99.8 6.8E-19 1.5E-23 172.7 19.8 217 96-390 1-246 (256)
19 PRK14101 bifunctional glucokin 99.8 2.6E-18 5.7E-23 188.9 21.8 272 94-454 17-329 (638)
20 TIGR00749 glk glucokinase, pro 99.8 5.3E-18 1.1E-22 171.4 16.8 271 98-450 1-316 (316)
21 PF00480 ROK: ROK family; Int 99.7 7.7E-16 1.7E-20 142.3 12.3 160 99-290 1-179 (179)
22 PTZ00288 glucokinase 1; Provis 99.5 4.6E-12 1E-16 131.4 25.6 284 96-457 27-392 (405)
23 PF01869 BcrAD_BadFG: BadF/Bad 99.3 2.7E-10 5.9E-15 112.6 20.5 268 98-453 1-271 (271)
24 KOG1794 N-Acetylglucosamine ki 99.3 2.5E-09 5.5E-14 103.7 24.2 309 94-458 2-319 (336)
25 PF02685 Glucokinase: Glucokin 99.0 8.2E-09 1.8E-13 104.3 16.0 273 98-454 1-314 (316)
26 TIGR02707 butyr_kinase butyrat 99.0 4.6E-08 1E-12 100.2 20.9 261 97-427 2-320 (351)
27 PRK03011 butyrate kinase; Prov 98.9 2.3E-07 4.9E-12 95.4 21.7 283 96-450 3-342 (358)
28 smart00732 YqgFc Likely ribonu 98.8 1.3E-08 2.9E-13 84.7 8.0 98 96-237 2-99 (99)
29 COG2971 Predicted N-acetylgluc 98.6 2.5E-06 5.4E-11 84.3 19.0 273 94-453 4-289 (301)
30 COG0837 Glk Glucokinase [Carbo 98.2 0.00021 4.5E-09 70.6 20.2 267 96-453 7-317 (320)
31 PRK00976 hypothetical protein; 98.1 0.00012 2.5E-09 73.8 17.2 79 359-455 233-311 (326)
32 PRK13318 pantothenate kinase; 97.7 6.7E-05 1.5E-09 73.8 6.0 131 97-262 2-142 (258)
33 PF00370 FGGY_N: FGGY family o 97.3 0.001 2.2E-08 64.6 8.6 92 96-194 1-99 (245)
34 TIGR01312 XylB D-xylulose kina 97.2 0.00051 1.1E-08 73.4 6.2 90 98-194 1-97 (481)
35 TIGR00241 CoA_E_activ CoA-subs 97.1 0.015 3.3E-07 56.7 15.3 49 96-159 1-49 (248)
36 TIGR03286 methan_mark_15 putat 96.7 0.15 3.2E-06 53.2 18.3 24 90-113 139-162 (404)
37 PRK13321 pantothenate kinase; 96.6 0.0032 6.9E-08 61.9 5.6 138 97-263 2-143 (256)
38 TIGR01315 5C_CHO_kinase FGGY-f 96.6 0.0069 1.5E-07 66.0 8.6 73 97-176 2-77 (541)
39 TIGR01314 gntK_FGGY gluconate 96.5 0.0095 2.1E-07 64.3 8.7 73 96-176 1-76 (505)
40 TIGR01311 glycerol_kin glycero 96.5 0.0083 1.8E-07 64.5 8.2 61 96-159 2-65 (493)
41 PRK10939 autoinducer-2 (AI-2) 96.3 0.012 2.6E-07 63.7 8.4 73 96-175 4-81 (520)
42 PRK00047 glpK glycerol kinase; 96.3 0.011 2.4E-07 63.7 8.0 61 96-159 6-69 (498)
43 TIGR01234 L-ribulokinase L-rib 96.3 0.012 2.6E-07 64.1 8.1 61 96-159 2-77 (536)
44 PRK15027 xylulokinase; Provisi 96.2 0.015 3.2E-07 62.4 8.5 71 96-175 1-74 (484)
45 PRK10331 L-fuculokinase; Provi 96.0 0.023 5E-07 60.7 8.4 60 96-158 3-67 (470)
46 PTZ00294 glycerol kinase-like 95.8 0.034 7.4E-07 60.0 8.9 61 96-159 3-66 (504)
47 COG1070 XylB Sugar (pentulose 95.8 0.03 6.4E-07 60.5 8.3 63 95-159 4-69 (502)
48 PRK13317 pantothenate kinase; 95.8 1.1 2.5E-05 44.6 18.8 49 402-454 225-273 (277)
49 PLN02295 glycerol kinase 95.6 0.038 8.2E-07 59.8 8.3 62 96-160 1-65 (512)
50 TIGR00555 panK_eukar pantothen 95.5 1.9 4.1E-05 43.0 19.3 46 402-451 233-278 (279)
51 TIGR02628 fuculo_kin_coli L-fu 95.5 0.039 8.4E-07 58.9 8.0 59 96-157 2-65 (465)
52 PRK04123 ribulokinase; Provisi 95.5 0.046 9.9E-07 59.6 8.6 61 96-159 4-74 (548)
53 TIGR03192 benz_CoA_bzdQ benzoy 95.5 1 2.2E-05 45.1 17.1 70 360-455 217-288 (293)
54 COG1924 Activator of 2-hydroxy 94.1 3.9 8.4E-05 42.2 17.2 101 91-246 131-231 (396)
55 PTZ00009 heat shock 70 kDa pro 93.8 4.1 9E-05 45.6 18.7 55 205-261 153-212 (653)
56 KOG2517 Ribulose kinase and re 93.6 0.41 8.8E-06 51.4 9.8 95 94-201 5-103 (516)
57 PF07318 DUF1464: Protein of u 93.5 5.4 0.00012 40.8 17.2 277 99-455 1-315 (343)
58 PLN02669 xylulokinase 93.2 0.33 7.2E-06 53.1 8.6 78 87-175 3-96 (556)
59 PF00012 HSP70: Hsp70 protein; 92.3 12 0.00026 41.0 19.6 55 205-261 148-206 (602)
60 PF02782 FGGY_C: FGGY family o 91.7 1.7 3.8E-05 40.2 10.4 76 364-456 122-197 (198)
61 COG0554 GlpK Glycerol kinase [ 91.1 0.44 9.6E-06 50.4 6.1 74 94-175 4-81 (499)
62 TIGR01174 ftsA cell division p 90.7 12 0.00026 38.6 16.5 57 205-263 157-216 (371)
63 TIGR02627 rhamnulo_kin rhamnul 90.3 0.5 1.1E-05 50.3 5.9 59 98-156 1-63 (454)
64 TIGR01175 pilM type IV pilus a 90.0 2.7 5.9E-05 42.8 10.9 62 96-159 4-65 (348)
65 COG1069 AraB Ribulose kinase [ 89.8 1.1 2.3E-05 48.1 7.8 75 369-457 406-480 (544)
66 KOG0104 Molecular chaperones G 87.9 13 0.00028 41.7 14.4 83 359-457 333-415 (902)
67 KOG2517 Ribulose kinase and re 86.6 8.5 0.00018 41.6 12.0 49 402-459 417-465 (516)
68 PRK15080 ethanolamine utilizat 85.9 14 0.00031 36.4 12.6 136 89-263 18-155 (267)
69 COG4972 PilM Tfp pilus assembl 82.1 10 0.00022 38.6 9.6 125 96-222 11-165 (354)
70 PRK09472 ftsA cell division pr 80.2 43 0.00093 35.3 14.3 55 207-263 167-224 (420)
71 PRK05183 hscA chaperone protei 79.3 21 0.00046 39.6 12.2 55 205-261 162-219 (616)
72 PRK13410 molecular chaperone D 78.6 3.8 8.2E-05 46.0 6.0 82 359-457 297-378 (668)
73 PTZ00186 heat shock 70 kDa pre 78.0 7.8 0.00017 43.4 8.2 82 359-457 322-403 (657)
74 smart00842 FtsA Cell division 77.8 20 0.00044 33.1 9.8 106 97-215 1-108 (187)
75 PTZ00400 DnaK-type molecular c 77.5 31 0.00068 38.7 12.9 54 205-260 187-243 (663)
76 CHL00094 dnaK heat shock prote 75.4 5.1 0.00011 44.6 5.9 82 359-457 297-378 (621)
77 TIGR02350 prok_dnaK chaperone 74.7 29 0.00063 38.3 11.6 54 205-260 143-200 (595)
78 PF11104 PilM_2: Type IV pilus 73.3 17 0.00037 37.0 8.8 60 99-160 1-60 (340)
79 COG1069 AraB Ribulose kinase [ 72.5 17 0.00036 39.4 8.5 62 96-160 4-69 (544)
80 PRK00290 dnaK molecular chaper 72.3 43 0.00093 37.3 12.2 54 206-261 147-203 (627)
81 TIGR02529 EutJ ethanolamine ut 72.1 55 0.0012 31.7 11.6 50 209-263 78-128 (239)
82 COG1070 XylB Sugar (pentulose 72.1 1.4E+02 0.0031 32.2 15.9 77 364-457 374-450 (502)
83 PLN03184 chloroplast Hsp70; Pr 70.1 17 0.00037 40.8 8.5 82 359-457 334-415 (673)
84 TIGR01314 gntK_FGGY gluconate 70.0 23 0.0005 38.2 9.3 77 364-457 374-450 (505)
85 PRK10854 exopolyphosphatase; P 68.3 31 0.00066 37.5 9.7 62 96-157 12-75 (513)
86 TIGR01991 HscA Fe-S protein as 66.4 25 0.00054 39.0 8.7 82 359-457 281-362 (599)
87 PRK11031 guanosine pentaphosph 66.4 30 0.00065 37.4 9.2 62 96-157 7-70 (496)
88 PRK13929 rod-share determining 65.9 1.1E+02 0.0023 31.1 12.7 51 208-260 114-167 (335)
89 PF05378 Hydant_A_N: Hydantoin 65.7 21 0.00045 33.0 6.8 49 98-158 2-50 (176)
90 PRK01433 hscA chaperone protei 64.7 91 0.002 34.6 12.7 52 207-260 156-210 (595)
91 PRK13411 molecular chaperone D 64.3 18 0.00038 40.6 7.1 82 359-457 296-378 (653)
92 PRK10939 autoinducer-2 (AI-2) 63.0 41 0.00088 36.5 9.5 77 364-457 382-458 (520)
93 COG3426 Butyrate kinase [Energ 62.8 37 0.00081 34.0 8.1 60 359-427 264-323 (358)
94 PTZ00294 glycerol kinase-like 61.1 45 0.00097 36.0 9.4 46 403-457 410-455 (504)
95 PRK13928 rod shape-determining 60.6 96 0.0021 31.4 11.2 55 207-263 110-167 (336)
96 TIGR03706 exo_poly_only exopol 60.4 37 0.00081 34.0 8.1 61 97-157 2-64 (300)
97 TIGR01312 XylB D-xylulose kina 59.0 54 0.0012 34.8 9.5 47 403-458 394-440 (481)
98 TIGR00671 baf pantothenate kin 56.8 32 0.00069 33.5 6.6 44 98-150 2-45 (243)
99 PRK00109 Holliday junction res 55.5 94 0.002 27.5 8.9 22 95-116 4-25 (138)
100 TIGR03123 one_C_unchar_1 proba 54.2 20 0.00044 36.5 4.9 30 361-390 249-278 (318)
101 PRK00047 glpK glycerol kinase; 53.9 64 0.0014 34.7 9.1 46 403-457 407-452 (498)
102 TIGR02259 benz_CoA_red_A benzo 53.2 17 0.00036 38.2 4.1 74 360-453 358-432 (432)
103 PRK13324 pantothenate kinase; 52.9 38 0.00081 33.4 6.5 44 97-149 2-46 (258)
104 COG1521 Pantothenate kinase ty 52.8 1.1E+02 0.0025 30.0 9.7 43 97-148 2-44 (251)
105 PRK10331 L-fuculokinase; Provi 52.7 69 0.0015 34.2 9.0 46 403-457 393-438 (470)
106 COG0443 DnaK Molecular chapero 52.7 2.4E+02 0.0052 31.2 13.3 53 208-262 136-190 (579)
107 TIGR01311 glycerol_kin glycero 52.6 69 0.0015 34.4 9.0 47 402-457 402-448 (493)
108 PRK04123 ribulokinase; Provisi 51.4 66 0.0014 35.1 8.7 41 218-260 260-302 (548)
109 PRK03657 hypothetical protein; 51.3 41 0.0009 31.0 6.0 58 47-105 70-135 (170)
110 PRK00180 acetate kinase A/prop 50.1 1.4E+02 0.0031 31.4 10.5 47 368-426 304-350 (402)
111 TIGR02261 benz_CoA_red_D benzo 49.4 96 0.0021 30.7 8.6 73 359-453 187-262 (262)
112 cd00529 RuvC_resolvase Hollida 49.3 1.1E+02 0.0023 27.6 8.4 59 96-159 1-59 (154)
113 TIGR00329 gcp_kae1 metallohydr 49.2 2.9E+02 0.0063 27.7 17.2 137 98-271 1-153 (305)
114 PF02075 RuvC: Crossover junct 47.3 1.1E+02 0.0024 27.4 8.1 58 97-159 1-58 (149)
115 PRK13326 pantothenate kinase; 46.8 46 0.00099 32.9 6.0 45 96-149 7-51 (262)
116 TIGR02628 fuculo_kin_coli L-fu 46.7 1E+02 0.0022 32.8 9.1 46 403-457 397-442 (465)
117 TIGR01234 L-ribulokinase L-rib 45.6 1.1E+02 0.0025 33.2 9.4 49 402-458 438-486 (536)
118 PF14574 DUF4445: Domain of un 45.5 45 0.00098 35.2 6.0 81 354-454 295-376 (412)
119 COG3734 DgoK 2-keto-3-deoxy-ga 44.8 19 0.00042 35.9 2.9 24 94-117 4-27 (306)
120 PF13941 MutL: MutL protein 43.4 83 0.0018 33.7 7.6 55 96-157 1-55 (457)
121 PRK13320 pantothenate kinase; 43.2 64 0.0014 31.4 6.4 18 96-113 3-20 (244)
122 PRK15027 xylulokinase; Provisi 42.8 1.4E+02 0.0031 31.8 9.6 37 218-255 220-257 (484)
123 PRK05571 ribose-5-phosphate is 42.4 11 0.00024 34.0 0.8 62 201-262 8-77 (148)
124 TIGR02259 benz_CoA_red_A benzo 40.3 61 0.0013 34.1 5.9 46 405-455 381-430 (432)
125 PLN02295 glycerol kinase 39.4 1.4E+02 0.0031 32.2 8.9 48 402-458 415-462 (512)
126 COG0816 Predicted endonuclease 38.5 1.2E+02 0.0025 27.2 6.7 22 95-116 2-23 (141)
127 PF11215 DUF3010: Protein of u 38.4 84 0.0018 28.0 5.6 60 97-160 3-62 (138)
128 TIGR01118 lacA galactose-6-pho 37.6 20 0.00043 32.1 1.6 59 202-262 9-74 (141)
129 PRK08621 galactose-6-phosphate 37.6 25 0.00055 31.4 2.3 60 201-262 8-74 (142)
130 COG1546 CinA Uncharacterized p 37.2 1.3E+02 0.0028 27.6 6.8 67 48-116 65-139 (162)
131 TIGR01315 5C_CHO_kinase FGGY-f 36.7 1.7E+02 0.0037 31.9 9.1 76 364-457 417-492 (541)
132 PF00022 Actin: Actin; InterP 35.9 56 0.0012 33.6 5.0 51 403-456 314-368 (393)
133 PRK00039 ruvC Holliday junctio 35.4 2.2E+02 0.0048 25.9 8.2 59 96-159 3-61 (164)
134 PRK10640 rhaB rhamnulokinase; 34.9 2.1E+02 0.0045 30.6 9.3 76 364-457 348-423 (471)
135 PRK07058 acetate kinase; Provi 34.7 2.3E+02 0.0049 29.8 9.1 48 367-427 299-346 (396)
136 TIGR02261 benz_CoA_red_D benzo 34.6 1.1E+02 0.0023 30.3 6.4 21 96-116 2-22 (262)
137 PRK12613 galactose-6-phosphate 34.3 28 0.0006 31.2 2.0 60 201-262 8-73 (141)
138 TIGR02627 rhamnulo_kin rhamnul 33.0 2.3E+02 0.0051 29.9 9.2 76 365-458 361-436 (454)
139 TIGR00016 ackA acetate kinase. 32.3 1.2E+02 0.0026 32.0 6.6 46 368-426 308-354 (404)
140 PF01548 DEDD_Tnp_IS110: Trans 32.1 80 0.0017 27.4 4.7 43 97-148 1-43 (144)
141 COG3894 Uncharacterized metal- 32.0 63 0.0014 34.9 4.4 38 227-265 311-348 (614)
142 PF03652 UPF0081: Uncharacteri 31.6 1.1E+02 0.0023 27.0 5.3 21 96-116 2-22 (135)
143 TIGR00250 RNAse_H_YqgF RNAse H 31.5 2.3E+02 0.005 24.7 7.4 28 206-239 73-100 (130)
144 PRK09605 bifunctional UGMP fam 31.5 7E+02 0.015 27.0 17.7 137 96-267 2-146 (535)
145 TIGR02133 RPI_actino ribose 5- 31.2 28 0.0006 31.4 1.5 61 202-262 9-77 (148)
146 PRK12440 acetate kinase; Revie 29.9 4.4E+02 0.0096 27.7 10.3 48 367-427 301-348 (397)
147 TIGR00143 hypF [NiFe] hydrogen 29.8 1.7E+02 0.0037 33.2 7.8 47 402-454 661-711 (711)
148 PF00871 Acetate_kinase: Aceto 28.6 1.4E+02 0.0031 31.3 6.4 25 244-268 199-223 (388)
149 TIGR03123 one_C_unchar_1 proba 28.4 40 0.00086 34.4 2.3 21 94-114 127-147 (318)
150 PF05402 PqqD: Coenzyme PQQ sy 28.2 1.4E+02 0.003 22.3 4.9 34 35-68 30-63 (68)
151 PRK14878 UGMP family protein; 28.1 6.4E+02 0.014 25.5 17.3 59 203-267 83-142 (323)
152 PLN02669 xylulokinase 28.0 2.6E+02 0.0056 30.7 8.6 39 217-256 266-306 (556)
153 COG1548 Predicted transcriptio 27.6 1.2E+02 0.0025 30.2 5.1 20 96-117 4-23 (330)
154 COG0145 HyuA N-methylhydantoin 26.8 49 0.0011 37.3 2.8 61 54-114 210-297 (674)
155 COG0698 RpiB Ribose 5-phosphat 26.8 57 0.0012 29.5 2.7 61 202-262 9-77 (151)
156 PF02502 LacAB_rpiB: Ribose/Ga 26.5 36 0.00079 30.3 1.4 61 202-262 8-75 (140)
157 PRK07157 acetate kinase; Provi 26.1 1.5E+02 0.0032 31.3 6.0 47 368-426 301-347 (400)
158 PF01968 Hydantoinase_A: Hydan 26.0 63 0.0014 32.3 3.2 20 96-116 78-97 (290)
159 COG5146 PanK Pantothenate kina 25.5 79 0.0017 30.9 3.6 142 96-266 19-167 (342)
160 PTZ00466 actin-like protein; P 25.4 45 0.00098 34.7 2.1 51 402-455 301-354 (380)
161 PRK12615 galactose-6-phosphate 24.8 27 0.00059 32.3 0.3 62 201-262 8-76 (171)
162 PTZ00340 O-sialoglycoprotein e 24.4 7.9E+02 0.017 25.3 19.5 135 96-261 2-141 (345)
163 TIGR01120 rpiB ribose 5-phosph 24.4 61 0.0013 29.1 2.4 61 202-262 8-75 (143)
164 PRK10753 transcriptional regul 24.4 1.7E+02 0.0038 23.7 5.0 35 39-73 5-39 (90)
165 PRK00285 ihfA integration host 24.2 1.7E+02 0.0037 24.0 5.0 36 38-73 6-41 (99)
166 TIGR00199 cinA_cterm competenc 24.1 2.8E+02 0.006 24.8 6.7 54 48-102 53-114 (146)
167 PF14639 YqgF: Holliday-juncti 24.0 5.3E+02 0.011 23.1 9.1 98 96-239 6-115 (150)
168 TIGR00987 himA integration hos 23.7 1.8E+02 0.0038 23.8 5.0 36 38-73 5-40 (96)
169 PRK08622 galactose-6-phosphate 23.6 28 0.00061 32.1 0.2 61 202-262 9-76 (171)
170 TIGR03722 arch_KAE1 universal 23.5 7.6E+02 0.017 24.8 15.9 60 204-269 85-145 (322)
171 smart00411 BHL bacterial (prok 23.4 1.9E+02 0.004 23.0 5.0 36 38-73 4-39 (90)
172 PRK12397 propionate kinase; Re 22.8 5.3E+02 0.011 27.3 9.3 47 367-426 302-348 (404)
173 PRK09604 UGMP family protein; 22.8 8.1E+02 0.018 24.8 19.3 139 96-271 2-155 (332)
174 COG0068 HypF Hydrogenase matur 22.5 4.2E+02 0.009 30.1 8.7 73 369-453 669-745 (750)
175 PRK03661 hypothetical protein; 22.4 3.2E+02 0.0069 24.9 6.9 56 47-103 64-127 (164)
176 PF03309 Pan_kinase: Type III 22.1 94 0.002 29.2 3.4 19 97-115 1-19 (206)
177 TIGR03723 bact_gcp putative gl 22.0 3.1E+02 0.0067 27.7 7.4 18 97-114 1-18 (314)
178 TIGR01119 lacB galactose-6-pho 22.0 66 0.0014 29.7 2.2 61 202-262 9-76 (171)
179 PTZ00004 actin-2; Provisional 21.9 34 0.00073 35.5 0.4 51 402-455 299-352 (378)
180 KOG1903 Cell cycle-associated 21.8 69 0.0015 29.2 2.2 81 87-180 50-146 (217)
181 PRK12379 propionate/acetate ki 21.7 1.8E+02 0.0039 30.6 5.6 47 367-426 298-344 (396)
182 PTZ00452 actin; Provisional 21.2 67 0.0014 33.3 2.4 51 402-455 296-349 (375)
183 PF00216 Bac_DNA_binding: Bact 20.9 2E+02 0.0044 22.7 4.8 36 38-73 4-39 (90)
184 PRK13331 pantothenate kinase; 20.8 1E+02 0.0022 30.3 3.4 20 94-113 6-25 (251)
185 TIGR03285 methan_mark_14 putat 20.5 9.9E+02 0.022 25.0 10.7 80 359-458 336-418 (445)
186 PRK11678 putative chaperone; P 20.3 92 0.002 33.3 3.3 49 211-261 176-227 (450)
187 PF14450 FtsA: Cell division p 20.1 98 0.0021 26.4 2.8 19 97-115 1-19 (120)
No 1
>PLN02405 hexokinase
Probab=100.00 E-value=2.4e-117 Score=927.66 Aligned_cols=464 Identities=87% Similarity=1.310 Sum_probs=425.9
Q ss_pred CCceeeeeehhhHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCCCCCCcce
Q 012386 1 MGKVTVAATVVCAAAVCAAAALVVRRRMKSTGRWARAVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASEGGSKLKM 80 (465)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~i~~~~~~em~~gL~~~~~s~~~M 80 (465)
|+|+.+++++++++++|++++..+++++++..+|.++.+++++++++|.+|.++|++|+++|..||++||+++++|+++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~f~~~~~~L~~v~~~f~~em~~GL~~~~~s~l~M 80 (497)
T PLN02405 1 MGKVAVGAAVVCAAAVCAAAALVVRRRMKSSGKWARAMEILKEFEEDCATPIGKLRQVADAMTVEMHAGLASEGGSKLKM 80 (497)
T ss_pred CCceeeehhhhhHHHHHHHHHHhhhcccccchhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhccCCCCCcce
Confidence 78878888888888888888889998888777888999999999999999999999999999999999999876789999
Q ss_pred eccccccCCCCCcceeEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCCcccCCcchHHHHHHHHHHHHHHhhCC
Q 012386 81 LISYVDNLPTGDEKGLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGE 160 (465)
Q Consensus 81 lpt~v~~lP~G~E~G~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~ 160 (465)
|||||+++|||+|+|.|||||||||||||++|+|.|++..++.+.+++++||+++|.+++++||||||+||.+|+++++.
T Consensus 81 lpSyv~~lPtG~E~G~flAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~ip~~~~~gt~~~LFdfIA~~i~~fl~~~~~ 160 (497)
T PLN02405 81 LISYVDNLPSGDEKGLFYALDLGGTNFRVLRVLLGGKDGRVVKQEFEEVSIPPHLMTGSSDALFDFIAAALAKFVATEGE 160 (497)
T ss_pred eccccccCCCCCcceeEEEEecCCceEEEEEEEEcCCCCceeEEEEEEeecChhhccCCHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999875556676777999999999999999999999999999998764
Q ss_pred CCCCCCCCcceeeeeeecccccccCCceEEeccCCccccCCCCCCcHHHHHHHHHHHcCCCeeEEEEEechHHHhhcccc
Q 012386 161 GFHVSPGRQRELGFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRY 240 (465)
Q Consensus 161 ~~~~~~~~~~~lG~tfSfPv~q~~i~~g~Li~wtKgF~~~~~~g~dv~~~L~~al~~~gl~v~v~alvNDtvatlla~~y 240 (465)
+.....++.+++|||||||++|+++++|+|++|||||++++++|+||+++|+++|+|+|+||+|+||+|||||||++++|
T Consensus 161 ~~~~~~~~~l~LGfTFSFPv~Qtsi~~g~Li~WTKGF~~~~~vG~DVv~lL~~Al~r~~l~v~v~AlvNDTVGTL~a~aY 240 (497)
T PLN02405 161 DFHLPPGRQRELGFTFSFPVKQTSISSGTLIKWTKGFSIDDAVGQDVVGELTKAMERVGLDMRVSALVNDTIGTLAGGRY 240 (497)
T ss_pred ccccCcccccccceeEeeeeccCCCCceEEEEeccccccCCccCchHHHHHHHHHHHcCCCceEEEEEecCHHHHHHhhc
Confidence 43222346799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEEEEccccceeEEccCCCCcccCCCC---------------------------------CCCCceeeeehhcc
Q 012386 241 HNKDAIAAVILGTGTNAAYVERAHAIPKWHGLL---------------------------------PKSGEMIFEKIISG 287 (465)
Q Consensus 241 ~~~~~~iglIlGTG~Na~yie~~~~i~k~~~~~---------------------------------~~~g~~~fEkm~SG 287 (465)
.++++.||+|+|||+|+||+|+.+.||||++.. .++|.++||||+||
T Consensus 241 ~~~~~~iG~IlGTGtNacY~E~~~~i~k~~~~~~~~~~miINtEwG~F~~~~lp~T~~D~~lD~~S~nPG~Q~fEKmiSG 320 (497)
T PLN02405 241 YNPDVVAAVILGTGTNAAYVERAQAIPKWHGLLPKSGEMVINMEWGNFRSSHLPLTEYDHALDVESLNPGEQIFEKIISG 320 (497)
T ss_pred CCCCceEEEEEeCCeeeEEEeecccCccccccCCCCCeEEEEeccccCCCCCCCCchHHHHHhhcCCCCCcchhhHHHhh
Confidence 999999999999999999999999999985421 13455699999999
Q ss_pred ccHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccCchhhhhcccCCCcCHHHHHHHHhhhhccCCCCHHHHHHHHHHHH
Q 012386 288 MYLGEIVRRVLCRMAEEANFFGDTVPPKLKIPFILRTPHMSAMHHDTSPDLRVVGKKLKDILEISNTSLKMRKLVVELCD 367 (465)
Q Consensus 288 ~YLGEi~R~~l~~~~~~~~lf~~~~~~~l~~~~~l~t~~ls~i~~d~s~~~~~~~~il~~~~~~~~~~~~d~~~~~~ia~ 367 (465)
||||||+|++|+++++++.||++..|+.|.+||+|+|++||.|+.|++++++.+.+++++.|+++..+.+|++.+++||+
T Consensus 321 ~YLGEivRlvLl~l~~~~~lF~g~~~~~L~~~~~l~T~~ls~i~~D~s~~l~~~~~~l~~~l~~~~~~~~~~~~vr~i~~ 400 (497)
T PLN02405 321 MYLGEILRRVLLKMAEEAAFFGDTVPPKLKIPFILRTPDMSAMHHDTSPDLKVVGSKLKDILEIPNTSLKMRKVVVELCN 400 (497)
T ss_pred ccHHHHHHHHHHHHHHhccccCCCCcHhhcCCCCcccHHHHHHhcCCCchHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999899999999999999999999999999999999999999998888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEecceeccchhHHHHHHHHHHHHhccCCCccEEEEEeCChhHH
Q 012386 368 IVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGI 447 (465)
Q Consensus 368 ~V~~RaA~l~aagiaaii~~~~~~~~~~~~~~~~~V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l~~a~Dgs~i 447 (465)
.|.+|||||+|++|+||++++++........++++|++|||+|++||.|+++++++++++++++..++|+|++++||||+
T Consensus 401 ~V~~RAArL~Aa~iaail~k~~~~~~~~~~~~~~~VavDGsvye~yp~f~~~~~~~l~ell~~~~~~~v~l~~a~DGSGv 480 (497)
T PLN02405 401 IVATRGARLSAAGIYGILKKLGRDTVKDGEKQKSVIAMDGGLFEHYTEFSKCMESTLKELLGEEVSESIEVEHSNDGSGI 480 (497)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccccccCCCcceEEEEeCchhhcCcCHHHHHHHHHHHHhCcccCceEEEEEecCchHH
Confidence 99999999999999999999987421111124689999999999999999999999999998766778999999999999
Q ss_pred HHHHHHHHhcccchhcc
Q 012386 448 GAALLAASHSQYLEVEE 464 (465)
Q Consensus 448 GAAl~Aa~~~~~~~~~~ 464 (465)
|||++||++++|++|||
T Consensus 481 GAAl~AA~~~~~~~~~~ 497 (497)
T PLN02405 481 GAALLAASHSLYLEVEE 497 (497)
T ss_pred HHHHHHHHHhhhhcccC
Confidence 99999999999988886
No 2
>PLN02596 hexokinase-like
Probab=100.00 E-value=7.5e-114 Score=898.78 Aligned_cols=451 Identities=53% Similarity=0.883 Sum_probs=415.3
Q ss_pred CCceeeeeehhhHHHHHHHHHHHHhhhh-ccchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCCCCCCcc
Q 012386 1 MGKVTVAATVVCAAAVCAAAALVVRRRM-KSTGRWARAVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASEGGSKLK 79 (465)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~L~~i~~~~~~em~~gL~~~~~s~~~ 79 (465)
|+|+.++++++|++++|++| +++.+|. +++.+|+++++++++|+++|.+|.++|++|+++|..||++||+++++|+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~f~~~~~~L~~i~~~f~~em~~GL~~~~~s~l~ 80 (490)
T PLN02596 2 MRKEVVVAATVATVAAVAAA-VLMGRWKRRKERQWKHTQRILRKFARECATPVSKLWEVADALVSDMTASLTAEETTTLN 80 (490)
T ss_pred CcceeeehhHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhccCCCCCCc
Confidence 78888888888888888888 7888887 666899999999999999999999999999999999999999986668999
Q ss_pred eeccccccCCCCCcceeEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCCcccCCcchHHHHHHHHHHHHHHhhC
Q 012386 80 MLISYVDNLPTGDEKGLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEG 159 (465)
Q Consensus 80 Mlpt~v~~lP~G~E~G~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~ 159 (465)
||||||+++|||+|+|.|||||||||||||++|+|.|++..+....+++|+||++++.+++++||||||+||++|+++++
T Consensus 81 MlpTyv~~lPtG~E~G~yLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~Ip~~l~~~t~~eLFd~IA~~i~~fl~~~~ 160 (490)
T PLN02596 81 MLVSYVASLPSGDEKGLYYGLNLRGSNFLLLRARLGGKNEPISDLYREEISIPSNVLNGTSQELFDYIALELAKFVAEHP 160 (490)
T ss_pred eecccCCCCCCCCcceEEEEEeeCCceEEEEEEEEcCCCCceEEEEEEEecCChHhhcCCHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999886544566666789999999999999999999999999999876
Q ss_pred CCCCCCCCCcceeeeeeecccccccCCceEEeccCCccccCCCCCCcHHHHHHHHHHHcCCCeeEEEEEechHHHhhccc
Q 012386 160 EGFHVSPGRQRELGFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGR 239 (465)
Q Consensus 160 ~~~~~~~~~~~~lG~tfSfPv~q~~i~~g~Li~wtKgF~~~~~~g~dv~~~L~~al~~~gl~v~v~alvNDtvatlla~~ 239 (465)
.+.....++.+++|||||||++|+++++|+|++| |||++++++|+||+++|+++++|+|+||+|+||+|||||||++++
T Consensus 161 ~~~~~~~~~~l~lGfTFSFP~~Q~si~~G~Li~W-KgF~~~~~vG~Dvv~lL~~Al~r~~l~v~v~AivNDTVgTL~a~a 239 (490)
T PLN02596 161 GDEADTPERVKKLGFTVSYPVDQAAASSGSAIKW-KSFSADDTVGKALVNDINRALEKHGLKIRVFALVDDTIGNLAGGR 239 (490)
T ss_pred cccccCcccccccceEEeeeeeecCCCCEEEEEe-ccccCCCccCcHHHHHHHHHHHhcCCCceEEEEEEcCHHHHHhhh
Confidence 4332222457999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred ccCCceEEEEEEccccceeEEccCCCCcccCCCC---------------------------------CCCCceeeeehhc
Q 012386 240 YHNKDAIAAVILGTGTNAAYVERAHAIPKWHGLL---------------------------------PKSGEMIFEKIIS 286 (465)
Q Consensus 240 y~~~~~~iglIlGTG~Na~yie~~~~i~k~~~~~---------------------------------~~~g~~~fEkm~S 286 (465)
|.++++.||+|+|||+|+||+|+.+.|+||++.. +++|.++||||+|
T Consensus 240 Y~~~~~~iG~I~GTGtNacY~E~~~~i~k~~~~~~~~~~miINtEwG~F~~~~lp~T~~D~~lD~~S~nPG~Q~fEKMiS 319 (490)
T PLN02596 240 YYNKDTVAAVTLGMGTNAAYVEPAQAIPKWQSPSPESQEIVISTEWGNFNSCHLPITEFDASLDAESSNPGSRIFEKLTS 319 (490)
T ss_pred cCCCCeEEEEEEecccceEEEEEccccccccCCCCCCCeEEEEeccccCCCCCCCCChHHHHHhccCCCCCcchHHHHHh
Confidence 9999999999999999999999999999885311 1356679999999
Q ss_pred cccHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccCchhhhhcccCCCcCHHHHHHHHhhhhccCCCCHHHHHHHHHHH
Q 012386 287 GMYLGEIVRRVLCRMAEEANFFGDTVPPKLKIPFILRTPHMSAMHHDTSPDLRVVGKKLKDILEISNTSLKMRKLVVELC 366 (465)
Q Consensus 287 G~YLGEi~R~~l~~~~~~~~lf~~~~~~~l~~~~~l~t~~ls~i~~d~s~~~~~~~~il~~~~~~~~~~~~d~~~~~~ia 366 (465)
|||||||+|++++++++++.||++..|+.|.++|+|+|++||.++.|++++++.+.++|++.|+++.++.+|++.+++||
T Consensus 320 G~YLGElvRlvl~~l~~~~~lF~~~~~~~L~~~~~l~T~~lS~i~~d~s~~~~~~~~~l~~~l~~~~~~~~d~~~lr~i~ 399 (490)
T PLN02596 320 GMYLGEIVRRVLLKMAEETALFGDTLPPKLTTPYLLRSPDMAAMHQDTSEDHEVVNEKLKEIFGITDSTPMAREVVAEVC 399 (490)
T ss_pred hhhHHHHHHHHHHHHHHhccccCCCCcHhhcCCCccccHHHHHHhcCCCchHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999988999999999999999999999999999999999999999888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEecceeccchhHHHHHHHHHHHHhccCCCccEEEEEeCChhH
Q 012386 367 DIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSG 446 (465)
Q Consensus 367 ~~V~~RaA~l~aagiaaii~~~~~~~~~~~~~~~~~V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l~~a~Dgs~ 446 (465)
++|.+|||||+|++|+||++++++. ..++++|++|||+|++||.|+++++++++++++++...+|.|.+++||||
T Consensus 400 ~~V~~RAArL~Aa~iaail~k~g~~-----~~~~~~VavDGSvye~~p~f~~~l~~al~ellg~~~~~~i~~~~s~DGSG 474 (490)
T PLN02596 400 DIVAERGARLAGAGIVGIIKKLGRI-----ENKKSVVTVEGGLYEHYRVFRNYLHSSVWEMLGSELSDNVVIEHSHGGSG 474 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC-----CCCceEEEEeCcceeeCcCHHHHHHHHHHHHhCcccCCcEEEEEccCchh
Confidence 9999999999999999999999863 12468999999999999999999999999999887777999999999999
Q ss_pred HHHHHHHHHhcc
Q 012386 447 IGAALLAASHSQ 458 (465)
Q Consensus 447 iGAAl~Aa~~~~ 458 (465)
+|||++||++++
T Consensus 475 ~GAAl~AA~~~~ 486 (490)
T PLN02596 475 AGALFLAACQTG 486 (490)
T ss_pred HHHHHHHHhhcc
Confidence 999999999984
No 3
>PLN02362 hexokinase
Probab=100.00 E-value=4.7e-114 Score=905.12 Aligned_cols=459 Identities=59% Similarity=0.964 Sum_probs=417.9
Q ss_pred CCceeeeeehhhHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCCCCCCcce
Q 012386 1 MGKVTVAATVVCAAAVCAAAALVVRRRMKSTGRWARAVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASEGGSKLKM 80 (465)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~i~~~~~~em~~gL~~~~~s~~~M 80 (465)
|+|+.+++++++++++|++++..+++++++..+|.++.+.+++|+++|.+|.++|++|+++|..||++||+++++|+++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~f~~~~~~L~~v~~~f~~em~~GL~~~~~s~l~M 80 (509)
T PLN02362 1 MGKVAVGLAAAAAVAACAVAAVMVGRRVKSRRKWRRVVGVLKELEEACETPVGRLRQVVDAMAVEMHAGLASEGGSKLKM 80 (509)
T ss_pred CCceeeehhhhHHHHHHHHHHHhhhcccccchhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhccCCCCCCce
Confidence 78877788788877778888888888888777889999999999999999999999999999999999999876689999
Q ss_pred eccccccCCCCCcceeEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCCcccCCcchHHHHHHHHHHHHHHhhCC
Q 012386 81 LISYVDNLPTGDEKGLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGE 160 (465)
Q Consensus 81 lpt~v~~lP~G~E~G~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~ 160 (465)
|||||+++|||+|+|.|||||||||||||++|+|.|++...+.+++++|+||+++|.+++++||||||+||.+|+++++.
T Consensus 81 lPTyv~~lPtG~E~G~fLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~Ip~~l~~~~~~eLFd~IA~~i~~fl~~~~~ 160 (509)
T PLN02362 81 LLTFVDDLPTGSEIGTYYALDLGGTNFRVLRVQLGGQRSSILSQDVERHPIPQHLMNSTSEVLFDFIASSLKQFVEKEEN 160 (509)
T ss_pred ecCccCCCCCCCcceeEEEEecCCceEEEEEEEecCCCcceeeceeEEEecChhhccCCHHHHHHHHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999876556555556899999999999999999999999999998764
Q ss_pred CCCCCCCCcceeeeeeecccccccCCceEEeccCCccccCCCCCCcHHHHHHHHHHHcCCCeeEEEEEechHHHhhcccc
Q 012386 161 GFHVSPGRQRELGFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRY 240 (465)
Q Consensus 161 ~~~~~~~~~~~lG~tfSfPv~q~~i~~g~Li~wtKgF~~~~~~g~dv~~~L~~al~~~gl~v~v~alvNDtvatlla~~y 240 (465)
+.+....+.+++|||||||++|+++++|+|++|||||++++++|+||+++|+++|+|+++||+|+||+|||||||++++|
T Consensus 161 ~~~~~~~~~l~LGfTFSFPv~Q~si~~g~Li~WtKGF~~~~v~G~DVv~lL~~Al~r~~l~v~v~AlvNDTVgTL~a~aY 240 (509)
T PLN02362 161 GSEFSQVRRRELGFTFSFPVKQTSISSGILIKWTKGFAISDMVGKDVAECLQGALNRRGLDMRVAALVNDTVGTLALGHY 240 (509)
T ss_pred cccccccccccceeEEeeeeccCCCCceEEEEeccccccCcccCchHHHHHHHHHHHcCCCcEEEEEEEcCHHHHHhhhc
Confidence 32222235799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEEEEccccceeEEccCCCCcccCCCC---------------------------------CCCCceeeeehhcc
Q 012386 241 HNKDAIAAVILGTGTNAAYVERAHAIPKWHGLL---------------------------------PKSGEMIFEKIISG 287 (465)
Q Consensus 241 ~~~~~~iglIlGTG~Na~yie~~~~i~k~~~~~---------------------------------~~~g~~~fEkm~SG 287 (465)
.++++.||+|+|||+|+||+|+.+.|+||++.. +++|.++||||+||
T Consensus 241 ~~~~~~iG~IlGTGtNacY~E~~~~i~k~~~~~~~~~~miINtEwG~F~~~~lp~T~~D~~lD~~S~nPG~Q~fEKmiSG 320 (509)
T PLN02362 241 HDPDTVAAVIIGTGTNACYLERTDAIIKCQGLLTTSGSMVVNMEWGNFWSSHLPRTSYDIDLDAESPNPNDQGFEKMISG 320 (509)
T ss_pred CCCCceEEEEEECCccceEeeehhhcccccccCCCCCcEEEEeeccCCCCCCCCCchHHHHHhcCCCCcCcchHHHHHhh
Confidence 999999999999999999999999998885421 13566799999999
Q ss_pred ccHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccCchhhhhcccCCCcCHHHHHHHHhhhhccCCCCHHHHHHHHHHHH
Q 012386 288 MYLGEIVRRVLCRMAEEANFFGDTVPPKLKIPFILRTPHMSAMHHDTSPDLRVVGKKLKDILEISNTSLKMRKLVVELCD 367 (465)
Q Consensus 288 ~YLGEi~R~~l~~~~~~~~lf~~~~~~~l~~~~~l~t~~ls~i~~d~s~~~~~~~~il~~~~~~~~~~~~d~~~~~~ia~ 367 (465)
||||||+|++|++|++++.||++ .|++|.+||+|+|++||.|+.|++++++.+.++|++.++++.++.+|++.+++||+
T Consensus 321 ~YLGEivRlvL~~l~~~~~lF~~-~~~~L~~~~~l~T~~ls~i~~d~s~~l~~~~~~l~~~~~~~~~~~~~~~~v~~i~~ 399 (509)
T PLN02362 321 MYLGDIVRRVILRMSQESDIFGP-VSSRLSTPFVLRTPSVAAMHEDDSPELQEVARILKETLGISEVPLKVRKLVVKICD 399 (509)
T ss_pred ccHHHHHHHHHHHHHhccccccC-CcHhhcCCCccccHHHHHHhcCCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999985 68899999999999999999999999999999999999998889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCcC-CC---------CCceEEEEEecceeccchhHHHHHHHHHHHHhccCCCccEE
Q 012386 368 IVATRGARLSAAGIVGILKKLGRDTVR-DG---------EKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVV 437 (465)
Q Consensus 368 ~V~~RaA~l~aagiaaii~~~~~~~~~-~~---------~~~~~~V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~ 437 (465)
.|.+|||||+|++|+||++++++.... .. ..++++|++|||+|++||.|+++++++++++++++...+|.
T Consensus 400 ~V~~RaArL~Aa~iaail~k~~~~~~~~~~~~~~~~~~~~~~~~~VavDGsvye~yp~f~~~~~~~l~ell~~~~~~~v~ 479 (509)
T PLN02362 400 VVTRRAARLAAAGIVGILKKIGRDGSGGITSGRSRSDIQIMRRTVVAVEGGLYTNYTMFREYLHEALNEILGEDVAQHVI 479 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccccccccCCCceEEEEEeCchhhcCcCHHHHHHHHHHHHhCcccCceEE
Confidence 999999999999999999999842110 00 12468999999999999999999999999999887778999
Q ss_pred EEEeCChhHHHHHHHHHHhcccc
Q 012386 438 IEHSNDGSGIGAALLAASHSQYL 460 (465)
Q Consensus 438 l~~a~Dgs~iGAAl~Aa~~~~~~ 460 (465)
|.+++|||++|||++||++++|.
T Consensus 480 i~~a~DGSgvGAAl~AA~~~~~~ 502 (509)
T PLN02362 480 LKATEDGSGIGSALLAASYSSYS 502 (509)
T ss_pred EEEccCchHHHHHHHHHHHHhhh
Confidence 99999999999999999999984
No 4
>PLN02914 hexokinase
Probab=100.00 E-value=1.2e-110 Score=874.64 Aligned_cols=425 Identities=60% Similarity=0.989 Sum_probs=389.9
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCCCCCCcceeccccccCCCCCcceeEEEEEeCCceEEEEEEE
Q 012386 34 WARAVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASEGGSKLKMLISYVDNLPTGDEKGLFYALDLGGTNFRVLRVQ 113 (465)
Q Consensus 34 ~~~~~~~l~~~~~~~~~~~~~L~~i~~~~~~em~~gL~~~~~s~~~Mlpt~v~~lP~G~E~G~~LaiDlGGTNlRv~~V~ 113 (465)
..++.+.+++|+++|.+|.++|++|+++|.+||++||+++++|+++||||||.++|||+|+|.|||||||||||||++|+
T Consensus 34 ~~~~~~~~~~~~~~f~~~~~~L~~i~~~f~~em~~GL~~~~~s~l~MlpTyv~~lPtG~E~G~fLAlDlGGTNfRV~~V~ 113 (490)
T PLN02914 34 AVSVAPILTKLQKDCATPLPVLRHVADAMAADMRAGLAVDGGGDLKMILSYVDSLPSGNEKGLFYALDLGGTNFRVLRVQ 113 (490)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhccCCCCCcceeccccCCCCCCCeeeEEEEEecCCceEEEEEEE
Confidence 34688899999999999999999999999999999999875689999999999999999999999999999999999999
Q ss_pred ecCCcceeEEEEeeeeecCCCcccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCcceeeeeeecccccccCCceEEecc
Q 012386 114 LGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSFPVRQTSIASGDLIKW 193 (465)
Q Consensus 114 l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG~tfSfPv~q~~i~~g~Li~w 193 (465)
|.|++..+....+++++||++++.+++++||||||+||++|++++..+...+.++.++||||||||++|+++++|+|++|
T Consensus 114 L~g~~~~~~~~~~~~~~ip~~l~~gt~~eLFdfIA~~i~~fl~~~~~~~~~~~~~~l~LGfTFSFP~~Q~si~~g~Li~W 193 (490)
T PLN02914 114 LGGKDERVIATEFEQVSIPQELMFGTSEELFDFIASGLANFVAKEGGKFHLPEGRKREIGFTFSFPVKQTSIDSGILMKW 193 (490)
T ss_pred ecCCCCceeeeeEEEecCChhhccCCHHHHHHHHHHHHHHHHHhccccccCCccccccceeeEeeeeecCCCCceEEEEe
Confidence 98875556666677999999999999999999999999999998764332223468999999999999999999999999
Q ss_pred CCccccCCCCCCcHHHHHHHHHHHcCCCeeEEEEEechHHHhhcccccCCceEEEEEEccccceeEEccCCCCcccCCCC
Q 012386 194 TKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHNKDAIAAVILGTGTNAAYVERAHAIPKWHGLL 273 (465)
Q Consensus 194 tKgF~~~~~~g~dv~~~L~~al~~~gl~v~v~alvNDtvatlla~~y~~~~~~iglIlGTG~Na~yie~~~~i~k~~~~~ 273 (465)
||||+++|++|+||+++|+++|+|+++||+|+||+|||||||++++|.++++.||+|+|||+|+||+|+.+.||||++..
T Consensus 194 TKGF~~~gv~G~DVv~lL~~Al~r~~l~v~v~AivNDTVGTL~a~aY~~~~~~iGlIlGTGtNacY~E~~~~i~k~~~~~ 273 (490)
T PLN02914 194 TKGFAVSGTAGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYWDDDVMVAVILGTGTNACYVERTDAIPKLQGQK 273 (490)
T ss_pred ccccccCCccCchHHHHHHHHHHHcCCCceEEEEEEcCHHHHHhhhcCCCCceEEEEEECCeeeEEEeecccccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999985421
Q ss_pred --------------------------------CCCCceeeeehhccccHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCc
Q 012386 274 --------------------------------PKSGEMIFEKIISGMYLGEIVRRVLCRMAEEANFFGDTVPPKLKIPFI 321 (465)
Q Consensus 274 --------------------------------~~~g~~~fEkm~SG~YLGEi~R~~l~~~~~~~~lf~~~~~~~l~~~~~ 321 (465)
+++|.++||||+||+|||||+|++|+++++++.||++..|+.|.++|+
T Consensus 274 ~~~~~miINtEwG~F~~~lp~T~~D~~lD~~S~nPG~Q~fEKmiSG~YLGEivRlvLl~l~~~~~lF~~~~~~~L~~~~~ 353 (490)
T PLN02914 274 SSSGRTIINTEWGAFSDGLPLTEFDREMDAASINPGEQIFEKTISGMYLGEIVRRVLLKMAETSDLFGHFVPEKLSTPFA 353 (490)
T ss_pred CCCceEEEeccccccCCCCCCChHHHHHhhCCCCCCcchhhhHHhhhhHHHHHHHHHHHHHHhcccccCCCcHhhcCCCc
Confidence 135667999999999999999999999999999999888999999999
Q ss_pred cCchhhhhcccCCCcCHHHHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceE
Q 012386 322 LRTPHMSAMHHDTSPDLRVVGKKLKDILEISNTSLKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKS 401 (465)
Q Consensus 322 l~t~~ls~i~~d~s~~~~~~~~il~~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~aagiaaii~~~~~~~~~~~~~~~~ 401 (465)
|+|++||.|+.|+++++..+.++|++.+++ +++.+|++.+++||++|.+|||||+|++|+||+++++.........+++
T Consensus 354 l~T~~ls~i~~D~s~~l~~~~~~l~~~~~~-~~~~~d~~~vr~i~~~V~~RAArL~Aa~iaail~k~~~~~~~~~~~~~~ 432 (490)
T PLN02914 354 LRTPHLCAMQQDNSDDLQAVGSILYDVLGV-EASLSARRRVVEVCDTIVKRGGRLAGAGIVGILEKMEEDSKGMIFGKRT 432 (490)
T ss_pred cccHHHHHHhcCCChhHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCceE
Confidence 999999999999999999999999999998 5899999999999999999999999999999999998631100112468
Q ss_pred EEEEecceeccchhHHHHHHHHHHHHhccCCCccEEEEEeCChhHHHHHHHHHHhccc
Q 012386 402 VIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHSQY 459 (465)
Q Consensus 402 ~V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l~~a~Dgs~iGAAl~Aa~~~~~ 459 (465)
+||+|||+|++||.|+++++++++++++++..++|+|++++||||+|||++||++++|
T Consensus 433 ~VavDGSv~~~~p~f~~~l~~~l~ellg~~~~~~i~i~~a~DGSGvGAAl~AA~~s~~ 490 (490)
T PLN02914 433 VVAMDGGLYEKYPQYRRYMQDAVTELLGLELSKNIAIEHTKDGSGIGAALLAATNSKY 490 (490)
T ss_pred EEEEeCchhhcCccHHHHHHHHHHHHhCcccCCcEEEEEccCchHHHHHHHHHHhhcC
Confidence 9999999999999999999999999998877779999999999999999999999976
No 5
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.9e-102 Score=795.73 Aligned_cols=415 Identities=46% Similarity=0.691 Sum_probs=383.1
Q ss_pred hhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCCCC-CCcceeccccccCCCCCcceeEEEEEeCCceEEEE
Q 012386 32 GRWARAVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASEGG-SKLKMLISYVDNLPTGDEKGLFYALDLGGTNFRVL 110 (465)
Q Consensus 32 ~~~~~~~~~l~~~~~~~~~~~~~L~~i~~~~~~em~~gL~~~~~-s~~~Mlpt~v~~lP~G~E~G~~LaiDlGGTNlRv~ 110 (465)
.++..+..+++++++.|.+|.++|++++++|.+||++||++... +.++||||||.++|+|+|+|.|||||||||||||+
T Consensus 22 ~~~~~~~~~l~~~~~~f~l~~~~L~~v~~~~~~em~~gL~~~~~g~~~~mlpt~V~~lP~G~E~G~~lalDLGGTn~Rv~ 101 (474)
T KOG1369|consen 22 SRLAAVSRQLEELLALFQLPDEQLREVVDAFREEMERGLAKKTHGSAVKMLPTYVPDLPDGTEKGKFLALDLGGTNFRVL 101 (474)
T ss_pred hhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCcccccchhhcccCCCCCcCCCEEEEecCCCceEEE
Confidence 47888999999999999999999999999999999999996443 44999999999999999999999999999999999
Q ss_pred EEEecCCcceeEEEEeeeeecCCCcccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCcceeeeeeecccccccCCceEE
Q 012386 111 RVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSFPVRQTSIASGDL 190 (465)
Q Consensus 111 ~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG~tfSfPv~q~~i~~g~L 190 (465)
+|.++|++. ...+.+++|+||+++|++++++|||||++|+.+|+++++... ...+|+||||||||+|+++++|.|
T Consensus 102 ~v~L~g~~~-~~~~~~~~~~ip~~~m~gt~~~Lfd~Ia~~l~~F~~~~~~~~----~~~l~lgFTFSfP~~Q~si~~g~L 176 (474)
T KOG1369|consen 102 LVKLGGGRT-SVRMYNKIYAIPEEIMQGTGEELFDFIARCLADFLDKMGLKG----ASKLPLGFTFSFPCRQTSIDKGTL 176 (474)
T ss_pred EEEecCCcc-cceeeeeeEecCHHHHcCchHHHHHHHHHHHHHHHHHhcccc----ccccccceEEeeeeeecccccceE
Confidence 999988754 555566789999999999999999999999999999887542 122999999999999999999999
Q ss_pred eccCCccccCCCCCCcHHHHHHHHHHHcCCC-eeEEEEEechHHHhhcccccCCceEEEEEEccccceeEEccCCCCccc
Q 012386 191 IKWTKGFSIEDTVGEDVVGELTKAMERIGLD-MRVAALVNDTIGTLAGGRYHNKDAIAAVILGTGTNAAYVERAHAIPKW 269 (465)
Q Consensus 191 i~wtKgF~~~~~~g~dv~~~L~~al~~~gl~-v~v~alvNDtvatlla~~y~~~~~~iglIlGTG~Na~yie~~~~i~k~ 269 (465)
++|||||++++++|+||+++|+++|+|++++ +.|+|++||||||+++++|.+++|.||+|+|||||+||+|+..+|+++
T Consensus 177 ~~wTkGf~~~~~~g~Dvv~~L~eal~rr~~~~i~V~AlvNDTvGtl~~~~y~~~~~~igvI~GTGtNacY~e~~~~i~k~ 256 (474)
T KOG1369|consen 177 IRWTKGFKATDCEGEDVVRLLREAIKRRGLFDMDVVAVVNDTVGTLMTCAYEDPNCEIGVIFGTGTNACYMEDMRNIEKV 256 (474)
T ss_pred EEecccccchhhhcchHHHHHHHHHHHcCCcceEEEEEEecCHHhHhhceecCCCcEEEEEECCCccceeeeeccchhhc
Confidence 9999999999999999999999999999998 999999999999999999999999999999999999999999999998
Q ss_pred CCCC----------------------------------CCCCceeeeehhccccHHHHHHHHHHHHhhcccCCCCCCCCC
Q 012386 270 HGLL----------------------------------PKSGEMIFEKIISGMYLGEIVRRVLCRMAEEANFFGDTVPPK 315 (465)
Q Consensus 270 ~~~~----------------------------------~~~g~~~fEkm~SG~YLGEi~R~~l~~~~~~~~lf~~~~~~~ 315 (465)
.+.. +++|.+.||||+||||||||+|++|++|.+++.||++.. ++
T Consensus 257 ~~~~~~~~miIN~EWG~F~~~~~~l~~T~yD~~vD~eS~npG~~~~EKmisGmYLGEivR~vLl~m~~~~~lf~~~~-~~ 335 (474)
T KOG1369|consen 257 EGDAGRGPMCINTEWGAFGDNSLDLPRTEYDVVVDEESLNPGKQLFEKMISGMYLGEIVRLVLLDLLEEGLLFGGQS-TK 335 (474)
T ss_pred ccccCCCceEEEccccCCCccccccchhhHHHHHhhhcCCcchhHHHHHhccccHHHHHHHHHHHHhHhhhhhcccc-cc
Confidence 7421 245667999999999999999999999999999999876 67
Q ss_pred CCCCCccCchhhhhcccCCCcCHHHHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCC
Q 012386 316 LKIPFILRTPHMSAMHHDTSPDLRVVGKKLKDILEISNTSLKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRD 395 (465)
Q Consensus 316 l~~~~~l~t~~ls~i~~d~s~~~~~~~~il~~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~aagiaaii~~~~~~~~~~ 395 (465)
+ +|+.|+|+++|+|++|+++++..+.. +.+.+|++..+.+|++.++++|+.|++|||||+||||+||+++++..
T Consensus 336 l-~p~~~~T~~~S~i~~D~~~~l~~~~~-~~~~l~~~~~~~~~r~~V~~vc~~v~~RaA~L~aagIaail~k~~~~---- 409 (474)
T KOG1369|consen 336 L-TPFIFETKYVSAIEEDDTGALQETEK-ILDLLGLETTTTEDRKLVREVCDVVSRRAARLAAAGIAAILNKTGEL---- 409 (474)
T ss_pred c-CcceeccchHHhHhcCCchHHHHHHH-HHHhhCCCcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccc----
Confidence 7 99999999999999999999998888 77779998899999999999999999999999999999999999852
Q ss_pred CCCceEEEEEecceeccchhHHHHHHHHHHHHhccCCCccEEEEEeCChhHHHHHHHHHHhcccch
Q 012386 396 GEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHSQYLE 461 (465)
Q Consensus 396 ~~~~~~~V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l~~a~Dgs~iGAAl~Aa~~~~~~~ 461 (465)
...+++||+|||+|++||.|+++|+++++++++ ....|.|.+++|||++|||++||+++++++
T Consensus 410 -~~~~~~VgvdGsly~~yP~f~~~m~~~l~eLlg--~~~~v~i~~s~dgSg~GAAL~Aav~~~~~~ 472 (474)
T KOG1369|consen 410 -SRKRVTVGVDGSLYKNHPFFREYLKEALRELLG--PSIHVKLVLSEDGSGRGAALIAAVASRLKQ 472 (474)
T ss_pred -ccCceEEEeccchhHcCchHHHHHHHHHHHHhC--CCceEEEEECCCCccccHHHHHHHHhhhhc
Confidence 225789999999999999999999999999998 356899999999999999999999998864
No 6
>PTZ00107 hexokinase; Provisional
Probab=100.00 E-value=2.5e-100 Score=796.50 Aligned_cols=405 Identities=34% Similarity=0.542 Sum_probs=362.9
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCC---------CCCCcceeccccccCCCCCcceeEEEEEeCCce
Q 012386 36 RAVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASE---------GGSKLKMLISYVDNLPTGDEKGLFYALDLGGTN 106 (465)
Q Consensus 36 ~~~~~l~~~~~~~~~~~~~L~~i~~~~~~em~~gL~~~---------~~s~~~Mlpt~v~~lP~G~E~G~~LaiDlGGTN 106 (465)
+..+.+++++++|.+|.++|++|+++|.+||++||+++ ++|+++||||||+++|||+|+|.||||||||||
T Consensus 6 ~~~~~~~~~~~~f~~~~~~L~~i~~~f~~em~~GL~~~~~~~~~~~~~~s~l~Mlps~v~~lPtG~E~G~fLAlDlGGTN 85 (464)
T PTZ00107 6 KQRVRLASLVNQFTMSKEKLKELVDYFLYELVEGLEAHRRHRNLWIPNECSFKMLDSCVYNLPTGKEKGVYYAIDFGGTN 85 (464)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCccccccccCCCCCCCccceEEEEecCCce
Confidence 34566788888999999999999999999999999875 358899999999999999999999999999999
Q ss_pred EEEEEEEecCCcceeEEEEeeeeecCCCcccC---------CcchHHHHHHHHHHHHHHhhCCCCCCCCCCcceeeeeee
Q 012386 107 FRVLRVQLGGREGRVVKQEFEEVSIPPHLMTG---------SSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFS 177 (465)
Q Consensus 107 lRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~---------~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG~tfS 177 (465)
|||++|+|.|++ .....+++++||++++.+ ++++||||||+||.+|+++++... ...+.+++|||||
T Consensus 86 ~RV~~V~L~g~~--~~~~~~~~~~ip~~~~~~~~~~~~k~~t~~~lFd~IA~~i~~fl~~~~~~~--~~~~~l~lGfTFS 161 (464)
T PTZ00107 86 FRAVRVSLRGGG--KMERTQSKFSLPKSALLGEKGLLDKKATATDLFDHIAKSIKKMMEENGDPE--DLNKPVPVGFTFS 161 (464)
T ss_pred EEEEEEEeCCCC--ceeeEEEEEeCCHHHhccccccccccCCHHHHHHHHHHHHHHHHHhccccc--cccccccceeEEe
Confidence 999999998863 333344589999998888 899999999999999999876211 1235799999999
Q ss_pred cccccccCCceEEeccCCcccc-----CCCCCCcHHHHHHHHHHHcCCCeeEEEEEechHHHhhcccccC----CceEEE
Q 012386 178 FPVRQTSIASGDLIKWTKGFSI-----EDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHN----KDAIAA 248 (465)
Q Consensus 178 fPv~q~~i~~g~Li~wtKgF~~-----~~~~g~dv~~~L~~al~~~gl~v~v~alvNDtvatlla~~y~~----~~~~ig 248 (465)
||++|+++++|+|++|||||++ ++++|+||+++|+++|+|+++||+|+||+|||||||++++|.+ +++.||
T Consensus 162 FP~~Q~si~~g~Li~WtKGF~~~~~~~~~v~G~DV~~lL~~Al~r~~l~v~v~AivNDTVgTL~a~ay~~~~~~~~~~iG 241 (464)
T PTZ00107 162 FPCTQLSVNNAILIDWTKGFETGRATNDPVEGKDVGELLNDAFKRNNVPANVVAVLNDTVGTLISCAYQKPKNTPPCQVG 241 (464)
T ss_pred eeeecccCCceEEEEeccceeeccCCCCCccCchHHHHHHHHHHHcCCCceEEEEEEcCHHHHHHHHhcCcCCCCCceEE
Confidence 9999999999999999999999 9999999999999999999999999999999999999999999 999999
Q ss_pred EEEccccceeEEccCCCCcc---------cCC------------C----CCCCCceeeeehhccccHHHHHHHHHHHHhh
Q 012386 249 VILGTGTNAAYVERAHAIPK---------WHG------------L----LPKSGEMIFEKIISGMYLGEIVRRVLCRMAE 303 (465)
Q Consensus 249 lIlGTG~Na~yie~~~~i~k---------~~~------------~----~~~~g~~~fEkm~SG~YLGEi~R~~l~~~~~ 303 (465)
+|+|||+|+||+|+....++ |.. . .+++|.|+||||+||+|||||+|++++++.+
T Consensus 242 lIlGTG~NacY~E~~~~~~~~~~~iINtEwG~F~~~lp~T~~D~~lD~~S~npg~Q~fEKmiSG~YLGEi~Rlvl~~l~~ 321 (464)
T PTZ00107 242 VIIGTGSNACYFEPEVSAYGYAGTPINMECGNFDSKLPITPYDLEMDWYTPNRGRQQFEKMISGAYLGEISRRLIVHLLQ 321 (464)
T ss_pred EEEeccccceeeehhhccCCCCcEEEEeeccccCCCCCCChHHHHHhhcCCCCCcCchhhHHhhhhHHHHHHHHHHHHHh
Confidence 99999999999997543221 111 1 1357888999999999999999999999987
Q ss_pred cccCCCCCCCCCCCCCCccCchhhhhcccCCCcCHHHHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012386 304 EANFFGDTVPPKLKIPFILRTPHMSAMHHDTSPDLRVVGKKLKDILEISNTSLKMRKLVVELCDIVATRGARLSAAGIVG 383 (465)
Q Consensus 304 ~~~lf~~~~~~~l~~~~~l~t~~ls~i~~d~s~~~~~~~~il~~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~aagiaa 383 (465)
+ ..|+.|.++++|+|+++|.|+.|+++++..+.++|++.+++. ++.+|++.+++||+.|.+|||+|+|++|+|
T Consensus 322 ~------~~~~~l~~~~~~~t~~ls~i~~d~s~~l~~~~~~l~~~~~~~-~~~~d~~~lr~i~~~V~~RAA~L~Aa~iaa 394 (464)
T PTZ00107 322 L------KAPPKMWQSGSFESEDASMILNDQSPDLQFSRQVIKEAWDVD-LTDEDLYTIRKICELVRGRAAQLAAAFIAA 394 (464)
T ss_pred c------CCchhhcCCcccccHHHHhhhcCCCchHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 347788899999999999999999999999999999998884 788999999999999999999999999999
Q ss_pred HHHHhCCCCcCCCCCceEEEEEecceeccchhHHHHHHHHHHHHhccCCCccEEEEEeCChhHHHHHHHHHHhcc
Q 012386 384 ILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHSQ 458 (465)
Q Consensus 384 ii~~~~~~~~~~~~~~~~~V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l~~a~Dgs~iGAAl~Aa~~~~ 458 (465)
|+++++... ++++|++|||+|++||.|++++++++++++++. ..+|.|++++|||++|||++||++++
T Consensus 395 il~k~~~~~------~~~~VgvDGSv~~~~p~f~~~~~~~l~~ll~~~-~~~v~l~~a~DGSg~GAAl~AA~~~~ 462 (464)
T PTZ00107 395 PAKKTRTVQ------GKATVAIDGSVYVKNPWFRRLLQEYINSILGPD-AGNVVFYLADDGSGKGAAIIAAMVAN 462 (464)
T ss_pred HHHHhCCCC------CceEEEEeCcceecCccHHHHHHHHHHHHhCCC-CCcEEEEEccCchHHHHHHHHHHhcc
Confidence 999998721 468999999999999999999999999999876 56899999999999999999999874
No 7
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.6e-87 Score=668.13 Aligned_cols=413 Identities=38% Similarity=0.592 Sum_probs=375.8
Q ss_pred hHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCCCCCCcceeccccccCCCCCcceeEEEEEeCCceEEEEEE
Q 012386 33 RWARAVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASEGGSKLKMLISYVDNLPTGDEKGLFYALDLGGTNFRVLRV 112 (465)
Q Consensus 33 ~~~~~~~~l~~~~~~~~~~~~~L~~i~~~~~~em~~gL~~~~~s~~~Mlpt~v~~lP~G~E~G~~LaiDlGGTNlRv~~V 112 (465)
-|..+++.+.++++.|.+|.|+|.++.++|.+||++||+...++.++|+|+||...|+|+|+|.||+||+||||||+++|
T Consensus 13 ~~~~l~~~~~~~~~~~~~p~e~l~~v~~~Fieel~kgL~~~~G~~l~MIP~~v~~~p~g~e~g~~LaiD~GGTnlRvc~V 92 (466)
T COG5026 13 VEAALEQAVEELVESFTVPTEDLREVVKAFIEELEKGLQPKSGDFLPMIPTWVAPLPTGNESGSVLAIDLGGTNLRVCLV 92 (466)
T ss_pred ccHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHhccCCCCCCccccccccccCCCCCCCCCCEEEEecCCceEEEEEE
Confidence 57889999999999999999999999999999999999954434599999999999999999999999999999999999
Q ss_pred EecCCcceeEEEEeeeeecCCCcccC-CcchHHHHHHHHHHHHHHhhCCCCCCCCCCcceeeeeeecccccccCCceEEe
Q 012386 113 QLGGREGRVVKQEFEEVSIPPHLMTG-SSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSFPVRQTSIASGDLI 191 (465)
Q Consensus 113 ~l~g~~~~i~~~~~~~~~ip~~~~~~-~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG~tfSfPv~q~~i~~g~Li 191 (465)
.++|.+...+.+ + ++.+|.+.... +.+++|++||++++.|++++..+. ..+.+++|||||||++|+++++|.|+
T Consensus 93 ~l~g~gt~~~~~-s-ks~lp~e~~~~~~~~~l~~~iadrl~~fi~~~~~~~---~~~~l~~gfTFSYP~~q~sin~g~l~ 167 (466)
T COG5026 93 VLGGDGTFDIEQ-S-KSFLPVECRDSESRDELFGFIADRLAAFIKEQHPSG---YGSKLPIGFTFSYPLNQTSINEGQLI 167 (466)
T ss_pred EeCCCCCccccc-C-cccCchhhccCCChHHHHHHHHHHHHHHHHHhCchh---ccCcceeeEEEeccccccccCceeeE
Confidence 998876544433 2 44499887755 789999999999999999887643 25689999999999999999999999
Q ss_pred ccCCccccCCCCCCcHHHHHHHHHHHcCCCeeEEEEEechHHHhhcccccCCceEEEEEEccccceeEEccCCCCcccCC
Q 012386 192 KWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHNKDAIAAVILGTGTNAAYVERAHAIPKWHG 271 (465)
Q Consensus 192 ~wtKgF~~~~~~g~dv~~~L~~al~~~gl~v~v~alvNDtvatlla~~y~~~~~~iglIlGTG~Na~yie~~~~i~k~~~ 271 (465)
+|||||++++++|.||+++|+++|+++++|++|++|+|||+||++++.|.++++.||+|+|||||+||+++...|||+..
T Consensus 168 rwTKgf~i~e~ig~dvv~~l~e~l~~r~~pi~v~aviNDttgtlla~~yt~~~~~iG~IfGTGtN~~y~e~~~~ipkl~~ 247 (466)
T COG5026 168 RWTKGFDIPEVIGTDVVRLLQEALSARNLPIRVVAVINDTTGTLLASVYTSSETIIGIIFGTGTNGCYCEPKGRIPKLPR 247 (466)
T ss_pred eecccCcchhhhhhhHHHHHHHHHHhcCCceEEEEEecccHHHHHHHhhcCCCCeEEEEEecCccceEEeecccCCcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998872
Q ss_pred C-C-----------------------------------CCCCceeeeehhccccHHHHHHHHHHHHhhcccCCCCCCCCC
Q 012386 272 L-L-----------------------------------PKSGEMIFEKIISGMYLGEIVRRVLCRMAEEANFFGDTVPPK 315 (465)
Q Consensus 272 ~-~-----------------------------------~~~g~~~fEkm~SG~YLGEi~R~~l~~~~~~~~lf~~~~~~~ 315 (465)
. + |++|.+.||||+||+|||||+|++|.++..++.+|.+..|++
T Consensus 248 d~~~~~~pm~iN~EwGsfdn~~~~Lp~t~ydv~idq~s~~pg~~~~Ek~~sG~yLGellr~~L~~l~~qg~~~~~q~~~~ 327 (466)
T COG5026 248 DDLPETGPMLINCEWGSFDNELSVLPRTKYDVLIDQESPNPGHQIFEKMSSGMYLGELLRLILRNLYEQGLIFNGQDPEK 327 (466)
T ss_pred ccccccCCeEEEecccccCcceeeccccceeeeeccCCCCcchHHHhhhhcceeHHHHHHHHHHHHHHHHhhccccchhh
Confidence 0 1 234555999999999999999999999999999999899999
Q ss_pred CCCCCccCchhhhhcccCCCcCHHHHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCC
Q 012386 316 LKIPFILRTPHMSAMHHDTSPDLRVVGKKLKDILEISNTSLKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRD 395 (465)
Q Consensus 316 l~~~~~l~t~~ls~i~~d~s~~~~~~~~il~~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~aagiaaii~~~~~~~~~~ 395 (465)
+..|+.++|..+|.++.|++++++++...+.+.|+. ..+.++++.++.+|+.|++|||||+|++|+|++.+.+..
T Consensus 328 ~~~p~~l~t~~~s~i~~D~~~nl~~t~~~f~~~~~~-~tt~eer~lI~~l~~~i~~RAArlaa~~iaAi~~ktG~~---- 402 (466)
T COG5026 328 LTDPFALSTSVLSRIEEDPFENLRNTLTTFLNDFRA-PTTKEERKLIRRLVELIGRRAARLAAVPIAAIVIKTGAY---- 402 (466)
T ss_pred cccceeeecchhhhhccccccccchhHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHhhHHHHhhhHHHhhhhcCCC----
Confidence 999999999999999999999999999999998998 478899999999999999999999999999999999852
Q ss_pred CCCceEEEEEecceeccchhHHHHHHHHHHHHhccCCCccEEEEEeCChhHHHHHHHHHHhccc
Q 012386 396 GEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHSQY 459 (465)
Q Consensus 396 ~~~~~~~V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l~~a~Dgs~iGAAl~Aa~~~~~ 459 (465)
++..|+.||+++++||.|+++++++++++++.... .+.+++++|||++|||++|+.+.+.
T Consensus 403 ---k~~~v~~dGsv~e~yp~f~~~~~~~l~~~~g~~~~-~i~i~~a~dgsglGAAl~a~~~~k~ 462 (466)
T COG5026 403 ---KAYHVGADGSVIERYPGFRSMLREALKALLGEEGE-KIKIKPAEDGSGLGAALCALLAQKP 462 (466)
T ss_pred ---ccceeeeecchhhhchhHHHHHHHHHHHhhcccCc-eeeEEecccCcchHHHHHHHHhccc
Confidence 35579999999999999999999999999985444 8999999999999999999887643
No 8
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=100.00 E-value=3.5e-56 Score=420.90 Aligned_cols=202 Identities=48% Similarity=0.753 Sum_probs=171.1
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCCCCC--CcceeccccccCCCCCcceeEEEEEeCCceEEEEEEE
Q 012386 36 RAVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASEGGS--KLKMLISYVDNLPTGDEKGLFYALDLGGTNFRVLRVQ 113 (465)
Q Consensus 36 ~~~~~l~~~~~~~~~~~~~L~~i~~~~~~em~~gL~~~~~s--~~~Mlpt~v~~lP~G~E~G~~LaiDlGGTNlRv~~V~ 113 (465)
+..+.++++.++|.+|.++|++|+++|++||+.||++++.+ +++||||||+++|+|+|+|.|||||||||||||++|+
T Consensus 2 ~~~~~v~~~~~~f~~s~~~L~~i~~~f~~em~~gL~~~~~~~~~l~MlPs~v~~~P~G~E~G~~LalDlGGTnlRv~~V~ 81 (206)
T PF00349_consen 2 DLQQAVQKLLQQFTLSDEQLQEISDRFLEEMEKGLAKSSSSMSSLKMLPSYVTSLPTGNEKGDFLALDLGGTNLRVALVE 81 (206)
T ss_dssp HHHHHHHHHHGGGS--HHHHHHHHHHHHHHHHHHHSTTTGCG-SS-EEEESEESSTTSTTEEEEEEEEESSSSEEEEEEE
T ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHccCCCCceeeeccccccccCCCCCCCceEEEEeecCcEEEEEEEE
Confidence 45678889999999999999999999999999999986522 4999999999999999999999999999999999999
Q ss_pred ecCCcceeEEEEeeeeecCCCcccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCcceeeeeeecccccccCCceEEecc
Q 012386 114 LGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSFPVRQTSIASGDLIKW 193 (465)
Q Consensus 114 l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG~tfSfPv~q~~i~~g~Li~w 193 (465)
+.|++ .....+++|+||.+++.+++++||||||+||.+|+++++.. +.++.+++|||||||++|+++++|+|++|
T Consensus 82 L~g~~--~~~~~~~~~~ip~~~~~~~~~~lFd~ia~~i~~f~~~~~~~---~~~~~l~lGfTFSFP~~q~~~~~g~li~w 156 (206)
T PF00349_consen 82 LSGNG--KVEIEQEKYKIPEELMNGSGEELFDFIADCIAEFLKEHNLE---SRDEKLPLGFTFSFPVEQTSLNSGTLIRW 156 (206)
T ss_dssp EESSS--EEEEEEEEEE--HHHHTSBHHHHHHHHHHHHHHHHHHTTTT---STTSEEEEEEEEESSEEESSTTEEEE---
T ss_pred EcCCC--CceeeeccccCChHHhcCCcccHHHHHHHHHHHHHHHhccc---ccccccceEEEEEEEEEeccCCCeEEEEe
Confidence 98875 33334468999999999999999999999999999987652 12678999999999999999999999999
Q ss_pred CCccccCCCCCCcHHHHHHHHHHHcCCC-eeEEEEEechHHHhhcccccC
Q 012386 194 TKGFSIEDTVGEDVVGELTKAMERIGLD-MRVAALVNDTIGTLAGGRYHN 242 (465)
Q Consensus 194 tKgF~~~~~~g~dv~~~L~~al~~~gl~-v~v~alvNDtvatlla~~y~~ 242 (465)
||||++++++|+|++++|+++|+|++++ |+|+||+|||||||++++|.+
T Consensus 157 tKgf~~~~~~G~dv~~lL~~al~r~~~~~v~v~aivNDTVgTLla~~Y~~ 206 (206)
T PF00349_consen 157 TKGFDISGVVGKDVVELLQDALKRRGLPNVKVVAIVNDTVGTLLAGAYQD 206 (206)
T ss_dssp -TT---BTGTTSBHHHHHHHHHHHHTSSEEEEEEEE-HHHHHHHHHHTT-
T ss_pred eccccccCCCCCccchhHHHHHHHhcccCcceEEEEECCHHHhhhhhcCC
Confidence 9999999999999999999999999998 999999999999999999964
No 9
>PF03727 Hexokinase_2: Hexokinase; InterPro: IPR022673 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF00349 from PFAM. Some members of the family have two copies of each of these domains. This entry represents the more C-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4DHY_A 3ID8_A 4DCH_A 3FGU_A 3QIC_A 3A0I_X 3VEY_A 3IDH_A 3VEV_A 3VF6_A ....
Probab=100.00 E-value=2.7e-47 Score=370.47 Aligned_cols=211 Identities=38% Similarity=0.638 Sum_probs=183.7
Q ss_pred ceEEEEEEccccceeEEccCCCCcccCCC--------------------------------CCCCCceeeeehhccccHH
Q 012386 244 DAIAAVILGTGTNAAYVERAHAIPKWHGL--------------------------------LPKSGEMIFEKIISGMYLG 291 (465)
Q Consensus 244 ~~~iglIlGTG~Na~yie~~~~i~k~~~~--------------------------------~~~~g~~~fEkm~SG~YLG 291 (465)
+|.||+|+|||+|+||+|+.++|+++++. .+.+|.++||||+||+|||
T Consensus 1 ~~~iGlIlGTG~Na~Y~e~~~~i~~~~~~~~~~iINtEwg~f~~~~~~~~~t~~D~~lD~~s~~pg~q~~EKmvsG~YLG 80 (243)
T PF03727_consen 1 ECRIGLILGTGTNACYMEKTSNIPKLKGKDGKMIINTEWGNFDNGLLDLPRTEYDKQLDAESPNPGFQPFEKMVSGMYLG 80 (243)
T ss_dssp TEEEEEEESSSEEEEEEEEGGG-TTSSTSSSEEEEEE-GGGTTTTTTTTTS-HHHHHHHHTSSSTTSSTTHHHTSHHHHH
T ss_pred CcEEEEEEeCCeeEEEeeecccCccccccCCeEEEEeecCCCCCCCccCCCCcccHHHhhhhhccCceEEeeEeceecHH
Confidence 48999999999999999999999888761 0245777999999999999
Q ss_pred HHHHHHHHHHhhcccCCCCCCCCCCCCCCccCchhhhhcccCCCcCHHHHHHHHhhhhccCCCCHHHHHHHHHHHHHHHH
Q 012386 292 EIVRRVLCRMAEEANFFGDTVPPKLKIPFILRTPHMSAMHHDTSPDLRVVGKKLKDILEISNTSLKMRKLVVELCDIVAT 371 (465)
Q Consensus 292 Ei~R~~l~~~~~~~~lf~~~~~~~l~~~~~l~t~~ls~i~~d~s~~~~~~~~il~~~~~~~~~~~~d~~~~~~ia~~V~~ 371 (465)
||+|++++++.+++.||++..|+.|.++++|+|++||.+++|++.++..+..+|.+.+++. ++.+|++.++.||++|++
T Consensus 81 El~Rlvl~~l~~~~~lf~~~~~~~l~~~~~~~t~~~s~i~~d~~~~~~~~~~~l~~~~~~~-~t~~d~~~lr~I~~aV~~ 159 (243)
T PF03727_consen 81 ELVRLVLLDLIKEGLLFGGQDPEKLNTPYSFDTKFLSEIEEDPSDDLSETREILQEFFGLP-PTEEDRQILRRICEAVST 159 (243)
T ss_dssp HHHHHHHHHHHHTTSSGGGS--TTTTSTTSS-HHHHHHHTCT-TTCHHHHHHHHHHCTTSS-S-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCccCCcchHHhcCCCcccHHHHhhhhhhcccchHHHHHHHhhccCCC-CCHHHHHHHHHHHHHHHH
Confidence 9999999999999999998899999999999999999999999999999999999999984 799999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEecceeccchhHHHHHHHHHHHHhccCCCccEEEEEeCChhHHHHHH
Q 012386 372 RGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAAL 451 (465)
Q Consensus 372 RaA~l~aagiaaii~~~~~~~~~~~~~~~~~V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l~~a~Dgs~iGAAl 451 (465)
|||+|+|++|+||+++++.... .+.++++|++|||+|++||.|++++++++++++++. ..+|+|++++|||++|||+
T Consensus 160 RAA~L~Aa~iaail~~~~~~~~--~~~~~v~VavDGSv~~~~p~f~~~l~~~l~~L~~~~-~~~v~~~~~~dgsg~GAAi 236 (243)
T PF03727_consen 160 RAARLVAAAIAAILNKIRENKG--RPRREVTVAVDGSVYEKYPNFRERLQEALDELLPEE-GCKVEFVLSEDGSGVGAAI 236 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCT--CSSEEEEEEEESHHHHHSTTHHHHHHHHHHHHSTT--CEEEEEEE-SSTHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhhhcccc--ccCCceEEEEeCcceeeCHHHHHHHHHHHHHhcccc-cceEEEEEecCchHHHHHH
Confidence 9999999999999999642110 223588999999999999999999999999998875 5689999999999999999
Q ss_pred HHHHhcc
Q 012386 452 LAASHSQ 458 (465)
Q Consensus 452 ~Aa~~~~ 458 (465)
+||+++|
T Consensus 237 ~AA~a~r 243 (243)
T PF03727_consen 237 AAAVACR 243 (243)
T ss_dssp HHHHHHH
T ss_pred HHHHhcC
Confidence 9998864
No 10
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=99.94 E-value=9.1e-25 Score=219.11 Aligned_cols=268 Identities=20% Similarity=0.229 Sum_probs=199.1
Q ss_pred eEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCCcccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCcceeeee
Q 012386 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFT 175 (465)
Q Consensus 96 ~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG~t 175 (465)
.+++||+|||++|++++++.|+ ++.+. +++.|. .+.+++.+.|.+.+.++....+ ....+|++
T Consensus 1 ~~lgidig~t~i~~~l~d~~g~---i~~~~--~~~~~~----~~~~~~~~~i~~~i~~~~~~~~--------~~~~igia 63 (303)
T PRK13310 1 MYYGFDIGGTKIELGVFNEKLE---LQWEE--RVPTPR----DSYDAFLDAVCELVAEADQRFG--------CKGSVGIG 63 (303)
T ss_pred CeEEEEeCCCcEEEEEECCCCc---EEEEE--EecCCC----cCHHHHHHHHHHHHHHHHhhcC--------CcceEEEe
Confidence 3799999999999999999884 66443 455553 3577889999988888864432 13479999
Q ss_pred eecccccccCCceEEeccCCccccCCCCCCcHHHHHHHHHHHcCCCeeEEEEEechHHHhhccccc----CCceEEEEEE
Q 012386 176 FSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH----NKDAIAAVIL 251 (465)
Q Consensus 176 fSfPv~q~~i~~g~Li~wtKgF~~~~~~g~dv~~~L~~al~~~gl~v~v~alvNDtvatlla~~y~----~~~~~iglIl 251 (465)
+|+|++.. .+.+ .++ +.+++.+.|+.+.|++.+ ++|| .+.||+++.+++++|. +.++.+++.+
T Consensus 64 ~pG~vd~~---~g~~-~~~---~~~~w~~~~l~~~l~~~~---~~pV---~ieNDa~aaalaE~~~g~~~~~~~~~~l~~ 130 (303)
T PRK13310 64 IPGMPETE---DGTL-YAA---NVPAASGKPLRADLSARL---GRDV---RLDNDANCFALSEAWDDEFTQYPLVMGLIL 130 (303)
T ss_pred CCCcccCC---CCEE-ecc---CcccccCCcHHHHHHHHH---CCCe---EEeccHhHHHHHHhhhccccCCCcEEEEEe
Confidence 99999742 2332 222 344455899999999999 8996 9999999999999874 5689999999
Q ss_pred ccccceeEEccCCCCcccCC---C-----CCCC----------------Cce-eeeehhccccHHHHHHHHHHHHhhccc
Q 012386 252 GTGTNAAYVERAHAIPKWHG---L-----LPKS----------------GEM-IFEKIISGMYLGEIVRRVLCRMAEEAN 306 (465)
Q Consensus 252 GTG~Na~yie~~~~i~k~~~---~-----~~~~----------------g~~-~fEkm~SG~YLGEi~R~~l~~~~~~~~ 306 (465)
|||++++++.+++.+.+.++ + +++. |+. |+|.++|+..|-+..+. ..
T Consensus 131 gtGiG~giv~~G~l~~G~~g~aGEiGH~~v~~~~~~~~g~~~~~~~C~CG~~gclE~~~S~~al~~~~~~----~~---- 202 (303)
T PRK13310 131 GTGVGGGLVFNGKPISGRSYITGEFGHMRLPVDALTLLGWDAPLRRCGCGQKGCIENYLSGRGFEWLYQH----YY---- 202 (303)
T ss_pred cCceEEEEEECCEEeeCCCCccccccceeecccccccccccCCCccCCCCCcchHHHhhcHHHHHHHHHH----hc----
Confidence 99999999999988877654 2 1221 222 99999999987433321 00
Q ss_pred CCCCCCCCCCCCCCccCchhhhhcccCCCcCHHHHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012386 307 FFGDTVPPKLKIPFILRTPHMSAMHHDTSPDLRVVGKKLKDILEISNTSLKMRKLVVELCDIVATRGARLSAAGIVGILK 386 (465)
Q Consensus 307 lf~~~~~~~l~~~~~l~t~~ls~i~~d~s~~~~~~~~il~~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~aagiaaii~ 386 (465)
. . .+ ...++++. ++..+..|..+++++++++|.+|+++++
T Consensus 203 ----~-~-------~~-----------------~~~~l~~~-----------~~~gd~~a~~~~~~~~~~la~~l~n~~~ 242 (303)
T PRK13310 203 ----G-E-------PL-----------------QAPEIIAL-----------YYQGDEQAVAHVERYLDLLAICLGNILT 242 (303)
T ss_pred ----c-C-------CC-----------------CHHHHHHH-----------HHcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 00 11222222 5667788999999999999999999999
Q ss_pred HhCCCCcCCCCCceEEEEEecceeccchhHHHHHHHHHHHHhccCCCccEEEEEe---CChhHHHHHHHH
Q 012386 387 KLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHS---NDGSGIGAALLA 453 (465)
Q Consensus 387 ~~~~~~~~~~~~~~~~V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l~~a---~Dgs~iGAAl~A 453 (465)
.++| + .|.++|++.+ .+.|.+.+++.+++...+.. ..+.|+.+ +|++.+|||.++
T Consensus 243 ~ldP--------~--~IvlgG~~~~-~~~~~~~l~~~~~~~~~~~~-~~~~i~~s~~~~~a~~~GAa~~~ 300 (303)
T PRK13310 243 IVDP--------H--LVVLGGGLSN-FDAIYEQLPKRLPRHLLPVA-RVPRIEKARHGDAGGVRGAAFLH 300 (303)
T ss_pred HcCC--------C--EEEECCcccC-hHHHHHHHHHHHHHHhcccc-cCceEEEcccCchHHHHhHHHHh
Confidence 9999 4 6778999987 78899999999987654432 34566555 888999999876
No 11
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=99.93 E-value=4.3e-24 Score=215.44 Aligned_cols=284 Identities=19% Similarity=0.209 Sum_probs=204.9
Q ss_pred EEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCCcccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCcceeeeeee
Q 012386 98 YALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFS 177 (465)
Q Consensus 98 LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG~tfS 177 (465)
|+||+|||++|++++++.|+ ++.+. +++.+ .+.+++++.|.+.|.+++++.+... .+...+|+++|
T Consensus 1 lgidig~t~~~~~l~d~~g~---i~~~~--~~~~~-----~~~~~~~~~l~~~i~~~~~~~~~~~----~~i~gIgva~p 66 (318)
T TIGR00744 1 IGVDIGGTTIKLGVVDEEGN---ILSKW--KVPTD-----TTPETIVDAIASAVDSFIQHIAKVG----HEIVAIGIGAP 66 (318)
T ss_pred CEEEeCCCEEEEEEECCCCC---EEEEE--EeCCC-----CCHHHHHHHHHHHHHHHHHhcCCCc----cceEEEEEecc
Confidence 58999999999999999884 65433 33433 2467899999999999998765322 45789999999
Q ss_pred cccccc-c-CCceEEeccCCccccCCCCCCcHHHHHHHHHHHcCCCeeEEEEEechHHHhhccccc----CCceEEEEEE
Q 012386 178 FPVRQT-S-IASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH----NKDAIAAVIL 251 (465)
Q Consensus 178 fPv~q~-~-i~~g~Li~wtKgF~~~~~~g~dv~~~L~~al~~~gl~v~v~alvNDtvatlla~~y~----~~~~~iglIl 251 (465)
+|++.. + +.....+.|. +.|+.+.|++.+ ++|| .+.||+++.+++++|. +.++.+.+++
T Consensus 67 G~vd~~~g~~~~~~~~~w~---------~~~l~~~l~~~~---~~pv---~v~NDa~~~alaE~~~g~~~~~~~~~~v~i 131 (318)
T TIGR00744 67 GPVNRQRGTVYFAVNLDWK---------QEPLKEKVEARV---GLPV---VVENDANAAALGEYKKGAGKGARDVICITL 131 (318)
T ss_pred ccccCCCCEEEecCCCCCC---------CCCHHHHHHHHH---CCCE---EEechHHHHHHHHHHhcccCCCCcEEEEEe
Confidence 999743 2 2222333555 689999999999 8996 9999999999999874 5688999999
Q ss_pred ccccceeEEccCCCCcccCC---CC-----CCCC-------ce-eeeehhccccHHHHHHHHHHHHhhcccCCCCCCCCC
Q 012386 252 GTGTNAAYVERAHAIPKWHG---LL-----PKSG-------EM-IFEKIISGMYLGEIVRRVLCRMAEEANFFGDTVPPK 315 (465)
Q Consensus 252 GTG~Na~yie~~~~i~k~~~---~~-----~~~g-------~~-~fEkm~SG~YLGEi~R~~l~~~~~~~~lf~~~~~~~ 315 (465)
|||++++++.+++.+.+.++ ++ .+.| .. |+|.++|+..|-+..+. .... . ..++.
T Consensus 132 gtGiG~giv~~G~~~~G~~g~agEiGh~~v~~~g~~~C~cG~~gclE~~~s~~al~~~~~~---~~~~----~--~~~~~ 202 (318)
T TIGR00744 132 GTGLGGGIIINGEIRHGHNGVGAEIGHIRMVPDGRLLCNCGKQGCIETYASATGLVRYAKR---ANAK----P--ERAEV 202 (318)
T ss_pred CCccEEEEEECCEEeecCCCCCcccCceEeCCCCCcccCCCCcchHHHHhCHHHHHHHHHH---Hhcc----c--cccch
Confidence 99999999999988876654 21 2233 22 99999999988443222 1100 0 00011
Q ss_pred CCCCCccCchhhhhcccCCCcCHHHHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCC
Q 012386 316 LKIPFILRTPHMSAMHHDTSPDLRVVGKKLKDILEISNTSLKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRD 395 (465)
Q Consensus 316 l~~~~~l~t~~ls~i~~d~s~~~~~~~~il~~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~aagiaaii~~~~~~~~~~ 395 (465)
+.. ...+. . .....+++. ++.++..|..+++++++++|.+|+++++.++|
T Consensus 203 ~~~-----------~~~~~--~-~~~~~i~~~-----------~~~gD~~a~~i~~~~~~~L~~~i~~~~~~~dP----- 252 (318)
T TIGR00744 203 LLA-----------LGDGD--G-ISAKHVFVA-----------ARQGDPVAVDSYREVARWAGAGLADLASLFNP----- 252 (318)
T ss_pred hhc-----------ccccC--C-CCHHHHHHH-----------HHCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC-----
Confidence 100 00000 0 012333333 66778999999999999999999999999998
Q ss_pred CCCceEEEEEecceeccchhHHHHHHHHHHHHhccCCCccEEEEEe---CChhHHHHHHHHH
Q 012386 396 GEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHS---NDGSGIGAALLAA 454 (465)
Q Consensus 396 ~~~~~~~V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l~~a---~Dgs~iGAAl~Aa 454 (465)
+ .|.++|++.+..+.|.+.+++.+++...+.....+.|..+ ++++.+|||.++.
T Consensus 253 ---~--~IvlgG~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~Gaa~~~~ 309 (318)
T TIGR00744 253 ---S--AIVLGGGLSDAGDLLLDPIRKSYKRWLFGGARQVADIIAAQLGNDAGLVGAADLAR 309 (318)
T ss_pred ---C--EEEECChhhhCcHHHHHHHHHHHHHHhhhcccCCcEEEEcccCCchhhHHHHHHHH
Confidence 4 5889999999999999999999988755433344555554 7889999998863
No 12
>PRK09698 D-allose kinase; Provisional
Probab=99.92 E-value=3.5e-23 Score=207.48 Aligned_cols=271 Identities=18% Similarity=0.179 Sum_probs=194.5
Q ss_pred ceeEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCCcccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCcceee
Q 012386 94 KGLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELG 173 (465)
Q Consensus 94 ~G~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG 173 (465)
.+++++||+|||++|+++++++|+ ++.+. .++.|.. .+.+ .++.+++.|.+++++.+ .+...+|
T Consensus 3 ~~~~lgidig~t~i~~~l~d~~g~---i~~~~--~~~~~~~---~~~~-~~~~l~~~i~~~~~~~~-------~~i~gig 66 (302)
T PRK09698 3 KNVVLGIDMGGTHIRFCLVDAEGE---ILHCE--KKRTAEV---IAPD-LVSGLGEMIDEYLRRFN-------ARCHGIV 66 (302)
T ss_pred ccEEEEEEcCCcEEEEEEEcCCCC---EEEEE--EeCCccc---cchH-HHHHHHHHHHHHHHHcC-------CCeeEEE
Confidence 468999999999999999999884 66433 4555533 2344 49999999999998753 2478899
Q ss_pred eeeecccccccCCceEEeccCCccccCCCCCCcHHHHHHHHHHHcCCCeeEEEEEechHHHhhccccc---CCceEEEEE
Q 012386 174 FTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH---NKDAIAAVI 250 (465)
Q Consensus 174 ~tfSfPv~q~~i~~g~Li~wtKgF~~~~~~g~dv~~~L~~al~~~gl~v~v~alvNDtvatlla~~y~---~~~~~iglI 250 (465)
+++|+|++.. .+.++. +..+..+++.+.|+.+.|++++ ++|| .+.||+++.++++.+. +.++.+++.
T Consensus 67 ia~pG~vd~~---~g~i~~-~~~~~~~~~~~~~l~~~l~~~~---~~pv---~v~NDa~aaa~~E~~~~~~~~~~~~~v~ 136 (302)
T PRK09698 67 MGFPALVSKD---RRTVIS-TPNLPLTALDLYDLADKLENTL---NCPV---FFSRDVNLQLLWDVKENNLTQQLVLGAY 136 (302)
T ss_pred EeCCcceeCC---CCEEEe-cCCCCccccccCCHHHHHHHHh---CCCE---EEcchHhHHHHHHHHhcCCCCceEEEEE
Confidence 9999999742 233322 2222222566899999999999 9996 9999999999998753 456899999
Q ss_pred EccccceeEEccCCCCcccCC---CC-----CCC------Cce-eeeehhccccHHHHHHHHHHHHhhcccCCCCCCCCC
Q 012386 251 LGTGTNAAYVERAHAIPKWHG---LL-----PKS------GEM-IFEKIISGMYLGEIVRRVLCRMAEEANFFGDTVPPK 315 (465)
Q Consensus 251 lGTG~Na~yie~~~~i~k~~~---~~-----~~~------g~~-~fEkm~SG~YLGEi~R~~l~~~~~~~~lf~~~~~~~ 315 (465)
+|||++++++.+++.+.+.++ ++ ++. |+. |+|.++|+..|- |..-.. + +.
T Consensus 137 lgtGIG~giv~~G~~~~G~~g~agEiGh~~v~~~~~~C~CG~~gclE~~~S~~al~---~~~~~~-------~----~~- 201 (302)
T PRK09698 137 LGTGMGFAVWMNGAPWTGAHGVAGELGHIPLGDMTQHCGCGNPGCLETNCSGMALR---RWYEQQ-------P----RD- 201 (302)
T ss_pred ecCceEEEEEECCEEeeCCCCCccccCceEeeCCCcccCCCCccchHhhcCHHHHH---HHHHHh-------c----CC-
Confidence 999999999999988877654 21 122 333 999999998873 322110 0 00
Q ss_pred CCCCCccCchhhhhcccCCCcCHHHHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCC
Q 012386 316 LKIPFILRTPHMSAMHHDTSPDLRVVGKKLKDILEISNTSLKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRD 395 (465)
Q Consensus 316 l~~~~~l~t~~ls~i~~d~s~~~~~~~~il~~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~aagiaaii~~~~~~~~~~ 395 (465)
. + ..++++. .+ + ..+++++++++|.+|+++++.++|
T Consensus 202 ----~--~-----------------~~~l~~~-~~------------~---~~~~~~~~~~la~~l~~li~~ldP----- 237 (302)
T PRK09698 202 ----Y--P-----------------LSDLFVH-AG------------D---HPFIQSLLENLARAIATSINLFDP----- 237 (302)
T ss_pred ----C--C-----------------HHHHHHH-cC------------C---HHHHHHHHHHHHHHHHHHHHHhCC-----
Confidence 0 0 1111211 00 0 025678889999999999999999
Q ss_pred CCCceEEEEEecceeccchhHHHHHHHHHHHHhccC-CCccEEEEEe---CChhHHHHHHHHH
Q 012386 396 GEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEE-VSETVVIEHS---NDGSGIGAALLAA 454 (465)
Q Consensus 396 ~~~~~~~V~idGsv~~~~~~f~~~l~~~l~~~~~~~-~~~~v~l~~a---~Dgs~iGAAl~Aa 454 (465)
+ .|+++|++.+..+.|.+.+++.+++.+... ....+.|..+ +|++.+|||.++.
T Consensus 238 ---~--~IvlgG~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~a~~~GAa~~~~ 295 (302)
T PRK09698 238 ---D--AIILGGGVMDMPAFPRETLIAMIQKYLRKPLPYEVVRFIYASSSDFNGAQGAAILAH 295 (302)
T ss_pred ---C--EEEEcCccccCchhHHHHHHHHHHHHccCccccCCcEEEECCcCCcccHHhHHHHHH
Confidence 4 688999999988888999999999876522 2335666555 7889999998863
No 13
>PRK09557 fructokinase; Reviewed
Probab=99.92 E-value=3.1e-23 Score=207.88 Aligned_cols=268 Identities=19% Similarity=0.234 Sum_probs=193.7
Q ss_pred eEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCCcccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCcceeeee
Q 012386 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFT 175 (465)
Q Consensus 96 ~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG~t 175 (465)
.+|++|+|||++|+++++++|+ ++.+. +++.|. .+.+++.+.|++.+.++..+.+ ....+|++
T Consensus 1 ~~lgidig~t~~~~~l~d~~g~---i~~~~--~~~~~~----~~~~~~~~~i~~~i~~~~~~~~--------~~~gIgi~ 63 (301)
T PRK09557 1 MRIGIDLGGTKIEVIALDDAGE---ELFRK--RLPTPR----DDYQQTIEAIATLVDMAEQATG--------QRGTVGVG 63 (301)
T ss_pred CEEEEEECCCcEEEEEECCCCC---EEEEE--EecCCC----CCHHHHHHHHHHHHHHHHhhcC--------CceEEEec
Confidence 3799999999999999999884 55443 445442 2567788888888888765432 24689999
Q ss_pred eecccccccCCceEEeccCCccccCCCCCCcHHHHHHHHHHHcCCCeeEEEEEechHHHhhccccc----CCceEEEEEE
Q 012386 176 FSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH----NKDAIAAVIL 251 (465)
Q Consensus 176 fSfPv~q~~i~~g~Li~wtKgF~~~~~~g~dv~~~L~~al~~~gl~v~v~alvNDtvatlla~~y~----~~~~~iglIl 251 (465)
+|+|++.. .+.+.... ...+.+.|+.+.|++.+ ++|| .+.||+++.++++.+. +.++.+.+++
T Consensus 64 ~pG~vd~~---~g~i~~~~----~~~~~~~~l~~~l~~~~---~~pv---~~~NDa~aaA~aE~~~g~~~~~~~~~~l~i 130 (301)
T PRK09557 64 IPGSISPY---TGLVKNAN----STWLNGQPLDKDLSARL---NREV---RLANDANCLAVSEAVDGAAAGKQTVFAVII 130 (301)
T ss_pred CcccCcCC---CCeEEecC----CccccCCCHHHHHHHHH---CCCE---EEccchhHHHHHHHHhcccCCCCcEEEEEE
Confidence 99999642 22222111 01113789999999999 8996 8999999999999873 4688999999
Q ss_pred ccccceeEEccCCCCcccCC---C-----CCC---------C------Cce-eeeehhccccHHHHHHHHHHHHhhcccC
Q 012386 252 GTGTNAAYVERAHAIPKWHG---L-----LPK---------S------GEM-IFEKIISGMYLGEIVRRVLCRMAEEANF 307 (465)
Q Consensus 252 GTG~Na~yie~~~~i~k~~~---~-----~~~---------~------g~~-~fEkm~SG~YLGEi~R~~l~~~~~~~~l 307 (465)
|||++++++.+++.+.+.++ + +++ + |.. |+|.++|+..|-+..+. ..
T Consensus 131 gtGiG~giv~~G~l~~G~~g~aGEiGH~~v~~~~~~~~~~~~g~~c~cG~~GclE~~~S~~al~~~~~~---~~------ 201 (301)
T PRK09557 131 GTGCGAGVAINGRVHIGGNGIAGEWGHNPLPWMDEDELRYRNEVPCYCGKQGCIETFISGTGFATDYRR---LS------ 201 (301)
T ss_pred ccceEEEEEECCEEEecCCCCCcccCceecccccccccccCCCCcCCCCCCCEEeEEEcHHHHHHHHHH---hc------
Confidence 99999999999988776653 2 111 1 222 99999999988433221 10
Q ss_pred CCCCCCCCCCCCCccCchhhhhcccCCCcCHHHHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012386 308 FGDTVPPKLKIPFILRTPHMSAMHHDTSPDLRVVGKKLKDILEISNTSLKMRKLVVELCDIVATRGARLSAAGIVGILKK 387 (465)
Q Consensus 308 f~~~~~~~l~~~~~l~t~~ls~i~~d~s~~~~~~~~il~~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~aagiaaii~~ 387 (465)
. . .++ ...+++. ++..+..|+.+++++++++|.+|+++++.
T Consensus 202 ---~--~------~~~-----------------~~~l~~~-----------~~~gd~~a~~~l~~~~~~La~~l~~l~~~ 242 (301)
T PRK09557 202 ---G--K------ALK-----------------GSEIIRL-----------VEEGDPVAELAFRRYEDRLAKSLAHVINI 242 (301)
T ss_pred ---c--C------CCC-----------------HHHHHHH-----------HHcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 001 1222222 55667889999999999999999999999
Q ss_pred hCCCCcCCCCCceEEEEEecceeccchhHHHHHHHHHHHHhccCCCccEEEEEe---CChhHHHHHHHH
Q 012386 388 LGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHS---NDGSGIGAALLA 453 (465)
Q Consensus 388 ~~~~~~~~~~~~~~~V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l~~a---~Dgs~iGAAl~A 453 (465)
++| + .|.++|++... +.|.+.+++.+++...+... .+.|+.+ +|++.+|||.++
T Consensus 243 ldP--------~--~IvlgG~~~~~-~~~~~~l~~~~~~~~~~~~~-~~~i~~s~~~~~a~~~GAa~~~ 299 (301)
T PRK09557 243 LDP--------D--VIVLGGGMSNV-DRLYPTLPALLKQYVFGGEC-ETPVRKALHGDSSGVRGAAWLW 299 (301)
T ss_pred hCC--------C--EEEEcCcccch-HHHHHHHHHHHHHHhccccc-CCeEEEcccCCchhhhhhhHhh
Confidence 999 4 68899999874 77888999999887653222 4555554 889999999764
No 14
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=99.91 E-value=9.5e-23 Score=203.38 Aligned_cols=263 Identities=16% Similarity=0.157 Sum_probs=190.2
Q ss_pred EEEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCCcccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCcceeeeee
Q 012386 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTF 176 (465)
Q Consensus 97 ~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG~tf 176 (465)
+++||+|||++|+++++++|+ ++.+. .++.|.. .+.+++.+.|.+.+.++.. +...+|+++
T Consensus 3 ~lgvdig~~~i~~~l~dl~g~---i~~~~--~~~~~~~---~~~~~~~~~i~~~i~~~~~-----------~~~~igi~~ 63 (291)
T PRK05082 3 TLAIDIGGTKIAAALVGEDGQ---IRQRR--QIPTPAS---QTPEALRQALSALVSPLQA-----------QADRVAVAS 63 (291)
T ss_pred EEEEEECCCEEEEEEEcCCCc---EEEEE--EecCCCC---CCHHHHHHHHHHHHHHhhh-----------cCcEEEEeC
Confidence 799999999999999999884 65433 4555542 3567788888888877742 135799999
Q ss_pred ecccccccCCceEEeccCCccccCCCCCCcHHHHHHHHHHHcCCCeeEEEEEechHHHhhccccc---CCceEEEEEEcc
Q 012386 177 SFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH---NKDAIAAVILGT 253 (465)
Q Consensus 177 SfPv~q~~i~~g~Li~wtKgF~~~~~~g~dv~~~L~~al~~~gl~v~v~alvNDtvatlla~~y~---~~~~~iglIlGT 253 (465)
|+|++... ...+ ...+.+++.+.|+.+.|++.+ ++|| .+.||+++.++++++. +.++.+.+.+||
T Consensus 64 pG~vd~~~---~~~~---~~~~~~~w~~~~l~~~l~~~~---~~pv---~v~NDa~a~a~aE~~~g~~~~~~~~~l~ig~ 131 (291)
T PRK05082 64 TGIINDGI---LTAL---NPHNLGGLLHFPLVQTLEQLT---DLPT---IALNDAQAAAWAEYQALPDDIRNMVFITVST 131 (291)
T ss_pred cccccCCe---eEEe---cCCCCccccCCChHHHHHHHh---CCCE---EEECcHHHHHHHHHHhcCCCCCCEEEEEECC
Confidence 99996321 1100 011223344899999999998 8996 9999999999999864 567899999999
Q ss_pred ccceeEEccCCCCcccCC---CC-----CCC------Cce-eeeehhccccHHHHHHHHHHHHhhcccCCCCCCCCCCCC
Q 012386 254 GTNAAYVERAHAIPKWHG---LL-----PKS------GEM-IFEKIISGMYLGEIVRRVLCRMAEEANFFGDTVPPKLKI 318 (465)
Q Consensus 254 G~Na~yie~~~~i~k~~~---~~-----~~~------g~~-~fEkm~SG~YLGEi~R~~l~~~~~~~~lf~~~~~~~l~~ 318 (465)
|++++++.+++.+.+.++ ++ ++. |.. |+|.++|+..| .|..- .. + +.
T Consensus 132 GiG~giv~~G~~~~G~~g~AGEiGh~~v~~~g~~c~CG~~GclE~~~S~~al---~~~~~-~~------~----~~---- 193 (291)
T PRK05082 132 GVGGGIVLNGKLLTGPGGLAGHIGHTLADPHGPVCGCGRRGCVEAIASGRAI---AAAAQ-GW------L----AG---- 193 (291)
T ss_pred CcceEEEECCEEeeCCCCccccccceEecCCCCCCCCCCcCchhhhcCHHHH---HHHHH-Hh------h----cC----
Confidence 999999999988876654 21 222 333 99999999988 33211 10 0 00
Q ss_pred CCccCchhhhhcccCCCcCHHHHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCC
Q 012386 319 PFILRTPHMSAMHHDTSPDLRVVGKKLKDILEISNTSLKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEK 398 (465)
Q Consensus 319 ~~~l~t~~ls~i~~d~s~~~~~~~~il~~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~aagiaaii~~~~~~~~~~~~~ 398 (465)
.+ ...+++. ++..+..|..+++++++++|.+|+++++.++|
T Consensus 194 ---~~-----------------~~~i~~~-----------~~~gd~~a~~~~~~~~~~la~~l~~l~~~~dp-------- 234 (291)
T PRK05082 194 ---CD-----------------AKTIFER-----------AGQGDEQAQALINRSAQAIARLIADLKATLDC-------- 234 (291)
T ss_pred ---CC-----------------HHHHHHH-----------HHcCCHHHHHHHHHHHHHHHHHHHHHHHHhCC--------
Confidence 00 1122222 45566788899999999999999999999999
Q ss_pred ceEEEEEecceeccchhHHHHHHHHHHHHhccCCCccEEEEEe---CChhHHHHHHHH
Q 012386 399 QKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHS---NDGSGIGAALLA 453 (465)
Q Consensus 399 ~~~~V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l~~a---~Dgs~iGAAl~A 453 (465)
+ .|+++|++.. .+.|.+.+++.++++... ..+.|..+ +|++.+|||.++
T Consensus 235 e--~IvlgG~~~~-~~~~~~~i~~~l~~~~~~---~~~~i~~s~~~~~~~~~GAa~~~ 286 (291)
T PRK05082 235 Q--CVVLGGSVGL-AEGYLELVQAYLAQEPAI---YHVPLLAAHYRHDAGLLGAALWA 286 (291)
T ss_pred C--EEEEcCcccc-HHHHHHHHHHHHHhcccc---cCCeEEECccCCchhhhhHHHHh
Confidence 4 6788999765 677889999999875221 14556655 788999999875
No 15
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=99.91 E-value=1e-22 Score=205.26 Aligned_cols=279 Identities=23% Similarity=0.312 Sum_probs=203.6
Q ss_pred cceeEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCCcccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCccee
Q 012386 93 EKGLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQREL 172 (465)
Q Consensus 93 E~G~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~l 172 (465)
+..++++||+|||+++++++++.|+ ++... ..++|... ..+++.+.|.+.++++++... . +...+
T Consensus 4 ~~~~~lgidIggt~i~~~l~d~~g~---~l~~~--~~~~~~~~---~~~~~~~~i~~~i~~~~~~~~-~------~~~~i 68 (314)
T COG1940 4 EAMTVLGIDIGGTKIKVALVDLDGE---ILLRE--RIPTPTPD---PEEAILEAILALVAELLKQAQ-G------RVAII 68 (314)
T ss_pred cCcEEEEEEecCCEEEEEEECCCCc---EEEEE--EEecCCCC---chhHHHHHHHHHHHHHHHhcC-C------cCceE
Confidence 4558999999999999999999885 55433 45666542 236889999999999988753 1 23456
Q ss_pred eeeeecccccc--c-CCceEEeccCCccccCCCCCCcHHHHHHHHHHHcCCCeeEEEEEechHHHhhccccc----CCce
Q 012386 173 GFTFSFPVRQT--S-IASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH----NKDA 245 (465)
Q Consensus 173 G~tfSfPv~q~--~-i~~g~Li~wtKgF~~~~~~g~dv~~~L~~al~~~gl~v~v~alvNDtvatlla~~y~----~~~~ 245 (465)
|+++++|.... . +...+.+.|. .+.|+.+.|++.+ ++|| .|.||+++.+++++|. +.++
T Consensus 69 GIgi~~pg~~~~~~~~~~~~~~~~~--------~~~~l~~~L~~~~---~~Pv---~veNDan~aalaE~~~g~~~~~~~ 134 (314)
T COG1940 69 GIGIPGPGDVDNGTVIVPAPNLGWW--------NGVDLAEELEARL---GLPV---FVENDANAAALAEAWFGAGRGIDD 134 (314)
T ss_pred EEEeccceeccCCcEEeecCCCCcc--------ccccHHHHHHHHH---CCCE---EEecHHHHHHHHHHHhCCCCCCCC
Confidence 66666665432 2 3334444444 3688999999999 9997 9999999999999985 4579
Q ss_pred EEEEEEccccceeEEccCCCCcccCC---C-----CCCCC-----ce-eeeehhccccHHHHHHHHHHHHhhcccCCCCC
Q 012386 246 IAAVILGTGTNAAYVERAHAIPKWHG---L-----LPKSG-----EM-IFEKIISGMYLGEIVRRVLCRMAEEANFFGDT 311 (465)
Q Consensus 246 ~iglIlGTG~Na~yie~~~~i~k~~~---~-----~~~~g-----~~-~fEkm~SG~YLGEi~R~~l~~~~~~~~lf~~~ 311 (465)
++.+++|||++++++.+++.+.+.++ + +.+.| +. |+|.++|+..| .|.....
T Consensus 135 ~~~i~~gtGIG~giv~~g~l~~G~~g~age~Gh~~v~~~g~c~cG~~GclE~~as~~al---~~~~~~~----------- 200 (314)
T COG1940 135 VVYITLGTGIGGGIIVNGKLLRGANGNAGEIGHMVVDPDGECGCGRRGCLETYASGRAI---LRRAAEA----------- 200 (314)
T ss_pred EEEEEEccceeEEEEECCEEeecCCCccccccceEECCCCccCCCCCCchHHhccHHHH---HHHHHhh-----------
Confidence 99999999999999999998887655 2 12223 22 99999999999 4443111
Q ss_pred CCCCCCCCCccCchhhhhcccCCCcCHHHHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 012386 312 VPPKLKIPFILRTPHMSAMHHDTSPDLRVVGKKLKDILEISNTSLKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRD 391 (465)
Q Consensus 312 ~~~~l~~~~~l~t~~ls~i~~d~s~~~~~~~~il~~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~aagiaaii~~~~~~ 391 (465)
.+..... . ....+++. ++..+..+..+++++++++|.+|+++++.++|
T Consensus 201 ~~~~~~~---~-----------------~~~~i~~~-----------a~~gd~~a~~~~~~~~~~la~~ianl~~~~~P- 248 (314)
T COG1940 201 LESEAGE---L-----------------TAKDIFEL-----------AAAGDPLAKEVIERAADYLARGLANLINLLDP- 248 (314)
T ss_pred ccccccC---c-----------------CHHHHHHH-----------HHcCCHHHHHHHHHHHHHHHHHHHHHHHhcCC-
Confidence 0110000 0 23334443 77888999999999999999999999999999
Q ss_pred CcCCCCCceEEEEEec-ceeccchhHHHHHHHHHHHHhccCC-Ccc-EEEEEe-CChhHHHHHHHHHH
Q 012386 392 TVRDGEKQKSVIALDG-GLFEHYTKFSACMQSTVKELLGEEV-SET-VVIEHS-NDGSGIGAALLAAS 455 (465)
Q Consensus 392 ~~~~~~~~~~~V~idG-sv~~~~~~f~~~l~~~l~~~~~~~~-~~~-v~l~~a-~Dgs~iGAAl~Aa~ 455 (465)
+ .|.++| ++....+.+.+.+++.+........ ... +.-.+. ++++++|||+++..
T Consensus 249 -------~--~IvigG~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ga~~~~~~ 307 (314)
T COG1940 249 -------E--VIVIGGGGVSALGDLLLPRLRKLLAKYLFPPVLRPRIVEAALGGNDAGLIGAALLALL 307 (314)
T ss_pred -------C--eEEEECcccccchhHHHHHHHHHHHHhhcchhcccchhhhhcccccccchhHHHHHHH
Confidence 4 577888 9999999999999999887765411 111 112233 79999999988754
No 16
>PRK12408 glucokinase; Provisional
Probab=99.89 E-value=3.7e-22 Score=203.24 Aligned_cols=272 Identities=17% Similarity=0.126 Sum_probs=175.0
Q ss_pred CCCcce-eEEEEEeCCceEEEEEEEecCCc---ceeEEEEeeeeecCCCcccCCcchHHHHHHHHHHHHHHhhCCCCCCC
Q 012386 90 TGDEKG-LFYALDLGGTNFRVLRVQLGGRE---GRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVS 165 (465)
Q Consensus 90 ~G~E~G-~~LaiDlGGTNlRv~~V~l~g~~---~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~ 165 (465)
++-|++ .||++|+||||+|+++|+.++.. ..+... ++++.+ ..+. +.+.+.+|+++ .
T Consensus 10 ~~~~~~~~~L~~DIGGT~i~~al~d~~g~~~~~~~~~~~--~~~~t~------~~~~----~~~~i~~~~~~-~------ 70 (336)
T PRK12408 10 VAVPRPESFVAADVGGTHVRVALVCASPDAAKPVELLDY--RTYRCA------DYPS----LAAILADFLAE-C------ 70 (336)
T ss_pred ccCcccccEEEEEcChhhhheeEEeccCCccccccccce--eEecCC------CccC----HHHHHHHHHhc-C------
Confidence 445555 39999999999999999876631 112221 223322 1122 33345566654 1
Q ss_pred CCCcceeeeeeecc-cccccCCceEEeccCCccccCCCCCCcHHHHHHHHHHHcCCC-eeEEEEEechHHHhhccccc--
Q 012386 166 PGRQRELGFTFSFP-VRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLD-MRVAALVNDTIGTLAGGRYH-- 241 (465)
Q Consensus 166 ~~~~~~lG~tfSfP-v~q~~i~~g~Li~wtKgF~~~~~~g~dv~~~L~~al~~~gl~-v~v~alvNDtvatlla~~y~-- 241 (465)
.+...+|+++++| ++...+.. +.+.|. . +.+.|++.+ ++| | .|+||.++..+++++.
T Consensus 71 -~~~~~igIg~pG~~~~~g~v~~-~nl~w~---------~--~~~~l~~~~---~~~~V---~l~ND~naaa~gE~~~~~ 131 (336)
T PRK12408 71 -APVRRGVIASAGYALDDGRVIT-ANLPWT---------L--SPEQIRAQL---GLQAV---HLVNDFEAVAYAAPYMEG 131 (336)
T ss_pred -CCcCEEEEEecCCceECCEEEe-cCCCCc---------c--CHHHHHHHc---CCCeE---EEeecHHHHHcccccCCH
Confidence 1357899999998 43222222 223563 1 357788777 884 6 9999999999999876
Q ss_pred -----------CC-ceEEEEEEccccceeEEccCCCCcccCC---C-----CCCCC---------------ceeeeehhc
Q 012386 242 -----------NK-DAIAAVILGTGTNAAYVERAHAIPKWHG---L-----LPKSG---------------EMIFEKIIS 286 (465)
Q Consensus 242 -----------~~-~~~iglIlGTG~Na~yie~~~~i~k~~~---~-----~~~~g---------------~~~fEkm~S 286 (465)
+. .+.+.+++|||++++++.+++ .++++ + +++.+ .-|+|.++|
T Consensus 132 ~~~~~~~g~~~~~~~~~~~i~~GTGiGggivi~g~--~g~~~~agE~GH~~~~~~~~~~~~l~~~~~~~~~~~~~E~~~S 209 (336)
T PRK12408 132 NQVLQLSGPAQAAAGPALVLGPGTGLGAALWIPNG--GRPVVLPTEAGQAALAAASELEMQLLQHLLRTRTHVPIEHVLS 209 (336)
T ss_pred hHeeeecCCCCCCCCcEEEEECCCcceEEEEEcCC--CceeeecCccccccCCCCCHHHHHHHHHHHhhCCceeHhheec
Confidence 23 578999999999999999876 33322 1 12221 127999999
Q ss_pred cccHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccCchhhhhcccCCCcCHHHHHHHHhhhhccCCCCHHHHHHH-HHH
Q 012386 287 GMYLGEIVRRVLCRMAEEANFFGDTVPPKLKIPFILRTPHMSAMHHDTSPDLRVVGKKLKDILEISNTSLKMRKLV-VEL 365 (465)
Q Consensus 287 G~YLGEi~R~~l~~~~~~~~lf~~~~~~~l~~~~~l~t~~ls~i~~d~s~~~~~~~~il~~~~~~~~~~~~d~~~~-~~i 365 (465)
|+.|..+.+..... . +.. +..++ ...+++. ++.. +..
T Consensus 210 g~gL~~~~~~~~~~---~--------~~~---~~~~~-----------------~~~v~~~-----------a~~ggD~~ 247 (336)
T PRK12408 210 GPGLLNLYRALCAL---R--------GAT---PVHAS-----------------PAAITAA-----------ALAGDDAL 247 (336)
T ss_pred HHHHHHHHHHHHhh---c--------CCC---cccCC-----------------HHHHHHH-----------HHhCCCHH
Confidence 99996665543211 0 000 00011 1223332 4444 789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEE-EEEecceecc-chhHHHH--HHHHHHHHhccCCCccEEEEEe
Q 012386 366 CDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSV-IALDGGLFEH-YTKFSAC--MQSTVKELLGEEVSETVVIEHS 441 (465)
Q Consensus 366 a~~V~~RaA~l~aagiaaii~~~~~~~~~~~~~~~~~-V~idGsv~~~-~~~f~~~--l~~~l~~~~~~~~~~~v~l~~a 441 (465)
|..++++.++++|.+|++++..++| + . |.++||+... .+.|.+. +++.+++...+...+.+.|..+
T Consensus 248 A~~~~~~~~~~La~~i~nl~~~ldP--------e--~GIvIGGGIs~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~I~~~ 317 (336)
T PRK12408 248 AHEALQVFCGFLGSVVGDMALAYGA--------R--GGVYLAGGILPQIADFLARSDFVERFLNKGPMRPALEQVPVKLV 317 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCC--------C--ceEEEECchhHhHHhhhcCHHHHHHHhccCchhhHhcCCCEEEE
Confidence 9999999999999999999999999 4 4 7899999876 5666664 7777766533222233444444
Q ss_pred --CChhHHHHHHHH
Q 012386 442 --NDGSGIGAALLA 453 (465)
Q Consensus 442 --~Dgs~iGAAl~A 453 (465)
.|++++|||.++
T Consensus 318 ~~~~agl~GAa~~~ 331 (336)
T PRK12408 318 EHGQLGVLGAASWY 331 (336)
T ss_pred eCCChHHHHHHHHH
Confidence 689999998654
No 17
>PRK00292 glk glucokinase; Provisional
Probab=99.88 E-value=4.6e-21 Score=193.59 Aligned_cols=266 Identities=17% Similarity=0.197 Sum_probs=175.7
Q ss_pred eEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCCcccCCcchHHHHHHHHHHHHHHh-hCCCCCCCCCCcceeee
Q 012386 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVAT-EGEGFHVSPGRQRELGF 174 (465)
Q Consensus 96 ~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~-~~~~~~~~~~~~~~lG~ 174 (465)
++|++|+||||+|++++++.+. .++.. .+++.+. . +.+.+.+.+++++ .+ .+...+|+
T Consensus 3 ~~lgiDIGgT~i~~~l~~~~~~--~~~~~--~~~~~~~------~----~~~~~~l~~~l~~~~~-------~~~~gigI 61 (316)
T PRK00292 3 PALVGDIGGTNARFALCDWANG--EIEQI--KTYATAD------Y----PSLEDAIRAYLADEHG-------VQVRSACF 61 (316)
T ss_pred eEEEEEcCccceEEEEEecCCC--ceeee--EEEecCC------C----CCHHHHHHHHHHhccC-------CCCceEEE
Confidence 5899999999999999997443 23432 2444431 1 2244555666654 22 23678999
Q ss_pred eeecccccccCCceEEeccCCccccCCCCCCcHHHHHHHHHHHcCCC-eeEEEEEechHHHhhccccc------------
Q 012386 175 TFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLD-MRVAALVNDTIGTLAGGRYH------------ 241 (465)
Q Consensus 175 tfSfPv~q~~i~~g~Li~wtKgF~~~~~~g~dv~~~L~~al~~~gl~-v~v~alvNDtvatlla~~y~------------ 241 (465)
++|+|++...+...++ .|. . + .+.|++.+ ++| | .++||+++..+++.+.
T Consensus 62 g~pG~vd~~~i~~~n~-~w~---------~-~-~~~l~~~~---~~p~v---~l~ND~~aaalgE~~~~~~~~~~~g~~~ 123 (316)
T PRK00292 62 AIAGPVDGDEVRMTNH-HWA---------F-S-IAAMKQEL---GLDHL---LLINDFTAQALAIPRLGEEDLVQIGGGE 123 (316)
T ss_pred EEeCcccCCEEEecCC-Ccc---------c-C-HHHHHHHh---CCCeE---EEEecHHHHHcccccCCHhheeEeCCCC
Confidence 9999997433333222 464 2 3 47788887 885 7 9999999999999752
Q ss_pred --CCceEEEEEEccccceeEEccCCCCcccCC---C-----CCCCC---------------ceeeeehhccccHHHHHHH
Q 012386 242 --NKDAIAAVILGTGTNAAYVERAHAIPKWHG---L-----LPKSG---------------EMIFEKIISGMYLGEIVRR 296 (465)
Q Consensus 242 --~~~~~iglIlGTG~Na~yie~~~~i~k~~~---~-----~~~~g---------------~~~fEkm~SG~YLGEi~R~ 296 (465)
+.+..+.+++|||++++++.++ +.++.+ + +++.+ .-|+|.++||..|.++.+.
T Consensus 124 ~~~~~~~~~v~~GTGiG~giv~~g--~~g~~g~agE~GH~~~~~~~~~~~~~~~~~c~~~~~gclE~~~Sg~~L~~~~~~ 201 (316)
T PRK00292 124 PVPGAPIAVIGPGTGLGVAGLVPV--DGRWIVLPGEGGHVDFAPRSEEEAQILQYLRAEFGHVSAERVLSGPGLVNLYRA 201 (316)
T ss_pred CCCCCcEEEEEcCCcceEEEEEec--CCceEEccCCcccccCCCCChHHHHHHHHHHHhcCCceeEeeecHHhHHHHHHH
Confidence 1367899999999999999886 444332 1 22222 2289999999999665443
Q ss_pred HHHHHhhcccCCCCCCCCCCCCCCccCchhhhhcccCCCcCHHHHHHHHhhhhccCCCCHHHHHHHH-HHHHHHHHHHHH
Q 012386 297 VLCRMAEEANFFGDTVPPKLKIPFILRTPHMSAMHHDTSPDLRVVGKKLKDILEISNTSLKMRKLVV-ELCDIVATRGAR 375 (465)
Q Consensus 297 ~l~~~~~~~~lf~~~~~~~l~~~~~l~t~~ls~i~~d~s~~~~~~~~il~~~~~~~~~~~~d~~~~~-~ia~~V~~RaA~ 375 (465)
.... .+ . ++ ..+ ...++++. ++..+ .+|..+++++++
T Consensus 202 ~~~~---~~-----~-~~-----~~~-----------------~~~~i~~~-----------a~~gdd~~A~~~~~~~~~ 239 (316)
T PRK00292 202 ICKA---DG-----R-EP-----ELL-----------------TPADITER-----------ALAGSCPLCRRTLSLFCV 239 (316)
T ss_pred HHhh---cC-----C-Cc-----ccC-----------------CHHHHHHH-----------HHhCCChHHHHHHHHHHH
Confidence 2111 00 0 00 000 12233333 66777 999999999999
Q ss_pred HHHHHHHHHHHHhCCCCcCCCCCceEEEEEecceec-cchhHHH-HHHHHHHHHh-ccC--CCccEEEEEeCChhHHHHH
Q 012386 376 LSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFE-HYTKFSA-CMQSTVKELL-GEE--VSETVVIEHSNDGSGIGAA 450 (465)
Q Consensus 376 l~aagiaaii~~~~~~~~~~~~~~~~~V~idGsv~~-~~~~f~~-~l~~~l~~~~-~~~--~~~~v~l~~a~Dgs~iGAA 450 (465)
++|.+|+++++.++|. . .|.+.||+.. ..+.|.+ .+++.+++.. .+. ....+.+...+|++++|||
T Consensus 240 ~lg~~i~~l~~~~~P~--------~-~vvi~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~agl~GAa 310 (316)
T PRK00292 240 ILGRVAGNLALTLGAR--------G-GVYIAGGIVPRFLEFFKASGFRAAFEDKGRFSAYLADIPVYVITHPQPGLLGAG 310 (316)
T ss_pred HHHHHHHHHHHHhcCC--------c-eEEEeCchHHhHHhhhccHHHHHHHhcCCChhhHHhcCCEEEEcCCChHHHHHH
Confidence 9999999999999992 1 3567888774 6666656 5566666532 121 1234556677999999998
Q ss_pred HHH
Q 012386 451 LLA 453 (465)
Q Consensus 451 l~A 453 (465)
.++
T Consensus 311 ~~~ 313 (316)
T PRK00292 311 AYL 313 (316)
T ss_pred HHH
Confidence 875
No 18
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=99.82 E-value=6.8e-19 Score=172.66 Aligned_cols=217 Identities=15% Similarity=0.202 Sum_probs=158.3
Q ss_pred eEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCCcccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCcceeeee
Q 012386 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFT 175 (465)
Q Consensus 96 ~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG~t 175 (465)
.|+++|+|||++|++++++.|+ ++.+. +++.|. .+.+++++.+.+.+.++..... ....+|++
T Consensus 1 ~~lgidiggt~i~~~l~d~~g~---i~~~~--~~~~~~----~~~~~~~~~i~~~i~~~~~~~~--------~~~gIgv~ 63 (256)
T PRK13311 1 MYYGFDMGGTKIELGVFDENLQ---RIWHK--RVPTPR----EDYPQLLQILRDLTEEADTYCG--------VQGSVGIG 63 (256)
T ss_pred CEEEEEECCCcEEEEEECCCCC---EEEEE--EecCCC----cCHHHHHHHHHHHHHHHHhhcC--------CCceEEEE
Confidence 4799999999999999999884 66443 455553 2466788888887777743221 23579999
Q ss_pred eecccccccCCceEEeccCCccccCCCCCCcHHHHHHHHHHHcCCCeeEEEEEechHHHhhccccc----CCceEEEEEE
Q 012386 176 FSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH----NKDAIAAVIL 251 (465)
Q Consensus 176 fSfPv~q~~i~~g~Li~wtKgF~~~~~~g~dv~~~L~~al~~~gl~v~v~alvNDtvatlla~~y~----~~~~~iglIl 251 (465)
+|+|++.. .+.+ .++ +.+++.+.|+++.|++.+ ++|| .+.||+++..+++.|. +.++.+++++
T Consensus 64 ~pG~vd~~---~g~i-~~~---~~~~w~~~~l~~~l~~~~---~~pV---~leNDanaaAlaE~~~g~~~~~~~~v~i~l 130 (256)
T PRK13311 64 IPGLPNAD---DGTV-FTA---NVPSAMGQPLQADLSRLI---QREV---RIDNDANCFALSEAWDPEFRTYPTVLGLIL 130 (256)
T ss_pred ecCcEECC---CCEE-Ecc---CCCcccCCChHHHHHHHH---CCCE---EEEchhhHHHHHHHHhcCCCCCCcEEEEEE
Confidence 99999642 2222 233 344455799999999999 8996 9999999999999884 4689999999
Q ss_pred ccccceeEEccCCCCcccCC---CC-----C-C---------------CCce-eeeehhccccHHHHHHHHHHHHhhccc
Q 012386 252 GTGTNAAYVERAHAIPKWHG---LL-----P-K---------------SGEM-IFEKIISGMYLGEIVRRVLCRMAEEAN 306 (465)
Q Consensus 252 GTG~Na~yie~~~~i~k~~~---~~-----~-~---------------~g~~-~fEkm~SG~YLGEi~R~~l~~~~~~~~ 306 (465)
|||++++++.+++.+.+.++ ++ + . +|.. |+|.++|+..|.+..+ ...
T Consensus 131 gtGiG~giv~~G~l~~G~~g~AGEiGh~~v~~~~~~~~~~~~~~~~c~cG~~GclE~~~S~~ai~~~~~----~~~---- 202 (256)
T PRK13311 131 GTGVGGGLIVNGSIVSGRNHITGEFGHFRLPVDALDILGADIPRVPCGCGHRGCIENYISGRGFEWMYS----HFY---- 202 (256)
T ss_pred CcCeEEEEEECCEEecCCCCCCccceeEEeccCcccccccCCCCCcCCCCCccchhheecHHHHHHHHH----Hhc----
Confidence 99999999999988776554 21 1 1 1222 9999999998843221 110
Q ss_pred CCCCCCCCCCCCCCccCchhhhhcccCCCcCHHHHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012386 307 FFGDTVPPKLKIPFILRTPHMSAMHHDTSPDLRVVGKKLKDILEISNTSLKMRKLVVELCDIVATRGARLSAAGIVGILK 386 (465)
Q Consensus 307 lf~~~~~~~l~~~~~l~t~~ls~i~~d~s~~~~~~~~il~~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~aagiaaii~ 386 (465)
. . .+ ...++++. ++..++.|+.+++++++++|.+|+++++
T Consensus 203 ----~--~------~~-----------------~~~~l~~~-----------~~~gd~~a~~~~~~~~~~la~~i~nl~~ 242 (256)
T PRK13311 203 ----Q--H------TL-----------------PATDIIAH-----------YAAGEPKAVAHVERFMDVLAVCLGNLLT 242 (256)
T ss_pred ----c--C------CC-----------------CHHHHHHH-----------HHcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 00 12233333 5667899999999999999999999999
Q ss_pred HhCC
Q 012386 387 KLGR 390 (465)
Q Consensus 387 ~~~~ 390 (465)
.+++
T Consensus 243 ~~~~ 246 (256)
T PRK13311 243 MLGS 246 (256)
T ss_pred HhCC
Confidence 9987
No 19
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=99.80 E-value=2.6e-18 Score=188.95 Aligned_cols=272 Identities=16% Similarity=0.181 Sum_probs=174.1
Q ss_pred ceeEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCCcccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCcceee
Q 012386 94 KGLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELG 173 (465)
Q Consensus 94 ~G~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG 173 (465)
-|.+|++|+||||+|+++++.+|. +.... +++.+. ++.+.+.|.+|+++.+. .+...+|
T Consensus 17 ~~~~L~iDIGGT~ir~al~~~~g~---i~~~~--~~~t~~----------~~~~~~~i~~~l~~~~~------~~~~~ig 75 (638)
T PRK14101 17 DGPRLLADVGGTNARFALETGPGE---ITQIR--VYPGAD----------YPTLTDAIRKYLKDVKI------GRVNHAA 75 (638)
T ss_pred CCCEEEEEcCchhheeeeecCCCc---cccee--EEecCC----------CCCHHHHHHHHHHhcCC------CCcceEE
Confidence 356999999999999999976553 54322 333321 24456667777765431 2367899
Q ss_pred eeeecccccccCCceEEeccCCccccCCCCCCcHHHHHHHHHHHcCCCeeEEEEEechHHHhhcc--------ccc----
Q 012386 174 FTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGG--------RYH---- 241 (465)
Q Consensus 174 ~tfSfPv~q~~i~~g~Li~wtKgF~~~~~~g~dv~~~L~~al~~~gl~v~v~alvNDtvatlla~--------~y~---- 241 (465)
|++++|++...+... .+.|. .++ +.|++.| |+|. +.++||.++..+++ .+.
T Consensus 76 ig~pGpVd~~~~~~~-nl~w~----------~~~-~~l~~~~---g~~~--v~l~ND~~aaA~ge~~l~~~e~~~~G~g~ 138 (638)
T PRK14101 76 IAIANPVDGDQVRMT-NHDWS----------FSI-EATRRAL---GFDT--LLVVNDFTALAMALPGLTDAQRVQVGGGT 138 (638)
T ss_pred EEEecCccCCeeeec-CCCcE----------ecH-HHHHHHc---CCCe--EEEEchHHHHHcCCccCCHHHeEEeCCCC
Confidence 999999986543332 33674 355 7788877 8862 59999999999995 332
Q ss_pred CCceEEEEEEcccccee---EE-ccCCCCc--ccCCC--CCCC---------------CceeeeehhccccHHHHHHHHH
Q 012386 242 NKDAIAAVILGTGTNAA---YV-ERAHAIP--KWHGL--LPKS---------------GEMIFEKIISGMYLGEIVRRVL 298 (465)
Q Consensus 242 ~~~~~iglIlGTG~Na~---yi-e~~~~i~--k~~~~--~~~~---------------g~~~fEkm~SG~YLGEi~R~~l 298 (465)
+.+..+.+++||||+.+ ++ .+++.+. .--|. +++. |..|+|.++||+.|.++.|...
T Consensus 139 ~~~~~~~~~lGtGTGlG~a~lv~~~g~~~~~g~E~GH~~~~~~~~~e~~~~~~~~~~~g~~~~E~~~Sg~gL~~~~~~~~ 218 (638)
T PRK14101 139 RRQNSVIGLLGPGTGLGVSGLIPADDRWIALGSEGGHASFAPQDEREDLVLQYARKKYPHVSFERVCAGPGMEIIYRALA 218 (638)
T ss_pred CCCCCcEEEEECCccceeeEEEecCCeeEECCCCccccCCCCCCHHHHHHHHHHHHhcCcceeeeecchhhHHHHHHHHH
Confidence 34567899997765444 32 4444221 11111 1211 2238999999999977766543
Q ss_pred HHHhhcccCCCCCCCCCCCCCCccCchhhhhcccCCCcCHHHHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 012386 299 CRMAEEANFFGDTVPPKLKIPFILRTPHMSAMHHDTSPDLRVVGKKLKDILEISNTSLKMRKLVVELCDIVATRGARLSA 378 (465)
Q Consensus 299 ~~~~~~~~lf~~~~~~~l~~~~~l~t~~ls~i~~d~s~~~~~~~~il~~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~a 378 (465)
.. . ..+ .+..++ ..++++. ++.++.+|..++++.++++|
T Consensus 219 ~~---~------~~~----~~~~~~-----------------~~~i~~~-----------a~~gd~~A~~~~~~~~~~lg 257 (638)
T PRK14101 219 AR---D------KKR----VAANVD-----------------TAEIVER-----------AHAGDALALEAVECFCAILG 257 (638)
T ss_pred hh---c------CCC----CcCcCC-----------------HHHHHHH-----------HHCCCHHHHHHHHHHHHHHH
Confidence 21 0 000 000011 2233333 66678999999999999999
Q ss_pred HHHHHHHHHhCCCCcCCCCCceEEEEEecceeccc-hhHHH-HHHHHHHHHhccC----CCccEEEEEeCChhHHHHHHH
Q 012386 379 AGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHY-TKFSA-CMQSTVKELLGEE----VSETVVIEHSNDGSGIGAALL 452 (465)
Q Consensus 379 agiaaii~~~~~~~~~~~~~~~~~V~idGsv~~~~-~~f~~-~l~~~l~~~~~~~----~~~~v~l~~a~Dgs~iGAAl~ 452 (465)
.++.+++..+++. + .|.++||+..+. +.|.+ .+.+++... ++- ..-.|.++..++.+++|||..
T Consensus 258 ~~~~nl~~~~~~p-------~--~vvigGGIs~~~~~~l~~~~f~~~f~~k-g~~~~~~~~ipv~~i~~~~~~l~Gaa~~ 327 (638)
T PRK14101 258 TFAGNLALTLGAL-------G--GIYIGGGVVPKLGELFTRSSFRARFEAK-GRFEAYLANIPTYLITAEYPAFLGVSAI 327 (638)
T ss_pred HHHHHHHHHhCCC-------C--cEEEeCcHHHHHHHHcChHHHHHHHHhC-CChHHHHhcCCEEEEeCCChhHHHHHHH
Confidence 9999999999831 3 578999998654 44432 455555432 110 124678888899999999765
Q ss_pred HH
Q 012386 453 AA 454 (465)
Q Consensus 453 Aa 454 (465)
+.
T Consensus 328 ~~ 329 (638)
T PRK14101 328 LA 329 (638)
T ss_pred HH
Confidence 53
No 20
>TIGR00749 glk glucokinase, proteobacterial type. This model represents glucokinase of E. coli and close homologs, mostly from other proteobacteria, presumed to have equivalent function. This glucokinase is more closely related to a number of uncharacterized paralogs than to the glucokinase glcK (fromerly yqgR) of Bacillus subtilis and its closest homologs, so the two sets are represented by separate models.
Probab=99.77 E-value=5.3e-18 Score=171.38 Aligned_cols=271 Identities=16% Similarity=0.193 Sum_probs=164.9
Q ss_pred EEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCCcccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCcceeeeeee
Q 012386 98 YALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFS 177 (465)
Q Consensus 98 LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG~tfS 177 (465)
|++|+||||+|+++++.++. ++... +.++. +.++.+.+.|.+|+++.+... .......|++.+
T Consensus 1 l~~DIGGT~i~~glvd~~g~---~l~~~----~~~~~-------~~~~~l~~~i~~~l~~~~~~~---~~~~~~~~Igi~ 63 (316)
T TIGR00749 1 LVGDIGGTNARLALCEIAPG---EISQA----KTYSG-------LDFPSLEAVVRVYLEEHKVEL---KDPIAKGCFAIA 63 (316)
T ss_pred CeEecCcceeeEEEEecCCC---ceeee----EEEec-------CCCCCHHHHHHHHHHhccccc---CCCcCeEEEEEe
Confidence 68999999999999987653 33221 11211 113455666667766533111 012456899999
Q ss_pred cccccccCCceEEeccCCccccCCCCCCcHHHHHHHHHHHcCC-CeeEEEEEechHHHhhcc--------ccc----CCc
Q 012386 178 FPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGL-DMRVAALVNDTIGTLAGG--------RYH----NKD 244 (465)
Q Consensus 178 fPv~q~~i~~g~Li~wtKgF~~~~~~g~dv~~~L~~al~~~gl-~v~v~alvNDtvatlla~--------~y~----~~~ 244 (465)
+|++...+... .+.|. .++. .|++.+ ++ || .|+||.++..+++ .+. +.+
T Consensus 64 Gpv~~~~v~~~-nl~w~----------~~~~-~l~~~~---g~~~V---~l~ND~naaa~ge~~l~~~~~~~~g~~~~~~ 125 (316)
T TIGR00749 64 CPITGDWVAMT-NHTWA----------FSIA-ELKQNL---GFSHL---EIINDFTAVSYAIPGLKKEDLIQFGGAEPVE 125 (316)
T ss_pred CcccCCEEEec-CCCCe----------eCHH-HHHHhc---CCCeE---EEEecHHHHHcCCCCCCHHHeEEeCCCCCCC
Confidence 99854333322 33574 5674 777777 87 46 9999999999998 653 456
Q ss_pred eEEEEEEccccceeE--Ec---cCCCCcccCCC-----CCCCC---------------ceeeeehhccccHHHHHHHHHH
Q 012386 245 AIAAVILGTGTNAAY--VE---RAHAIPKWHGL-----LPKSG---------------EMIFEKIISGMYLGEIVRRVLC 299 (465)
Q Consensus 245 ~~iglIlGTG~Na~y--ie---~~~~i~k~~~~-----~~~~g---------------~~~fEkm~SG~YLGEi~R~~l~ 299 (465)
+.+.+++||||+.+. +. +++.+ .+.++ +++.+ .-|+|.++||+.|..+.|....
T Consensus 126 ~~~~v~lGtGtG~G~~~vi~~~~g~l~-~~agE~GH~~~~~~~~~~~~~~~~l~~~~~~g~~E~~~Sg~gl~~~~~~~~~ 204 (316)
T TIGR00749 126 GKPIAILGAGTGLGVAHLIHQVDGRWV-VLPGEGGHVDFAPNSELEAIILEYLRAKIGHVSAERVLSGPGLVNIYEALVK 204 (316)
T ss_pred CCcEEEEecCCCceeeEEEEcCCCCEE-ECCCCcccccCCCCCHHHHHHHHHHHHhcCCceeeeeecHHHHHHHHHHHHh
Confidence 788999977665554 55 55544 33333 12112 2389999999999777665432
Q ss_pred HHhhcccCCCCCCCCCCCCCCccCchhhhhcccCCCcCHHHHHHHHhhhhccCCCCHHHHHHHH-HHHHHHHHHHHHHHH
Q 012386 300 RMAEEANFFGDTVPPKLKIPFILRTPHMSAMHHDTSPDLRVVGKKLKDILEISNTSLKMRKLVV-ELCDIVATRGARLSA 378 (465)
Q Consensus 300 ~~~~~~~lf~~~~~~~l~~~~~l~t~~ls~i~~d~s~~~~~~~~il~~~~~~~~~~~~d~~~~~-~ia~~V~~RaA~l~a 378 (465)
.. +...... .. . ..+ ..+.+++. ++..+ .+|..++++.++++|
T Consensus 205 ~~-----------~~~~~~~----------~~-~--~~~-~~~~I~~a-----------a~~Gdd~~A~~~~~~~~~~lg 248 (316)
T TIGR00749 205 AD-----------PERQFNK----------LP-Q--ENL-KPKDISER-----------ALAGSCTDCRRALSLFCVIYG 248 (316)
T ss_pred hc-----------Ccccccc----------cc-c--ccC-CHHHHHHH-----------HHcCCCHHHHHHHHHHHHHHH
Confidence 11 0000000 00 0 000 12344443 67776 899999999999999
Q ss_pred HHHHHHHHHhCCCCcCCCCCceEEEEEeccee-ccchhHHH-HHHHHHHHHhcc--C--CCccEEEEEeCChhHHHHH
Q 012386 379 AGIVGILKKLGRDTVRDGEKQKSVIALDGGLF-EHYTKFSA-CMQSTVKELLGE--E--VSETVVIEHSNDGSGIGAA 450 (465)
Q Consensus 379 agiaaii~~~~~~~~~~~~~~~~~V~idGsv~-~~~~~f~~-~l~~~l~~~~~~--~--~~~~v~l~~a~Dgs~iGAA 450 (465)
.++++++..++|. ...+ +.||+. +..+.+.+ .+.+.+++. ++ + ..-.|.+...++.+++|||
T Consensus 249 ~~i~nl~~~ldpe--------ggv~-v~GG~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~~~pv~~i~~~~~~l~G~~ 316 (316)
T TIGR00749 249 RFAGNLALNLGTR--------GGVY-IAGGIVPRFIEFFKASGFRAAFEDK-GRMKEYVHDIPVYVVLHDNPGLLGAG 316 (316)
T ss_pred HHHHHHHHHhCCC--------CcEE-EECcHHHhHHhhhCchHHHHHHhcc-CChhHHHhhCCEEEEcCCCccccCCC
Confidence 9999999999993 2234 555554 44444333 344433221 11 0 1236778888999999985
No 21
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=99.66 E-value=7.7e-16 Score=142.33 Aligned_cols=160 Identities=23% Similarity=0.372 Sum_probs=126.2
Q ss_pred EEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCCcccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCcceeeeeeec
Q 012386 99 ALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSF 178 (465)
Q Consensus 99 aiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG~tfSf 178 (465)
+||+|+|+++++++++.|+ ++.+. ++++| .+.+++++.+.+.+.+++.+... . .+|+++|+
T Consensus 1 gidig~~~i~~~l~d~~g~---ii~~~--~~~~~-----~~~~~~~~~l~~~i~~~~~~~~~--------~-gIgi~~pG 61 (179)
T PF00480_consen 1 GIDIGGTSIRIALVDLDGE---IIYSE--SIPTP-----TSPEELLDALAELIERLLADYGR--------S-GIGISVPG 61 (179)
T ss_dssp EEEEESSEEEEEEEETTSC---EEEEE--EEEHH-----SSHHHHHHHHHHHHHHHHHHHTC--------E-EEEEEESS
T ss_pred CEEECCCEEEEEEECCCCC---EEEEE--EEECC-----CCHHHHHHHHHHHHHHHHhhccc--------c-cEEEeccc
Confidence 6999999999999999885 77554 56666 36889999999999999987642 2 89999999
Q ss_pred ccccccCCceEEeccCCccccCCCCCCcHHHHHHHHHHHcCCCeeEEEEEechHHHhhccccc----CCceEEEEEEccc
Q 012386 179 PVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH----NKDAIAAVILGTG 254 (465)
Q Consensus 179 Pv~q~~i~~g~Li~wtKgF~~~~~~g~dv~~~L~~al~~~gl~v~v~alvNDtvatlla~~y~----~~~~~iglIlGTG 254 (465)
|++... +.++... .+++.+.|+.+.|++.+ ++|| .+.||+++.++++.+. +.++.+.+.+|||
T Consensus 62 ~v~~~~---g~i~~~~----~~~~~~~~l~~~l~~~~---~~pv---~i~Nd~~~~a~ae~~~~~~~~~~~~~~l~ig~G 128 (179)
T PF00480_consen 62 IVDSEK---GRIISSP----NPGWENIPLKEELEERF---GVPV---IIENDANAAALAEYWFGAAKDCDNFLYLYIGTG 128 (179)
T ss_dssp EEETTT---TEEEECS----SGTGTTCEHHHHHHHHH---TSEE---EEEEHHHHHHHHHHHHSTTTTTSSEEEEEESSS
T ss_pred cCcCCC---CeEEecC----CCCcccCCHHHHhhccc---ceEE---EEecCCCcceeehhhcCccCCcceEEEEEeecC
Confidence 997643 3332222 13445799999999999 8996 9999999999999873 4579999999999
Q ss_pred cceeEEccCCCCcccCCC--------CCC------CCce-eeeehhccccH
Q 012386 255 TNAAYVERAHAIPKWHGL--------LPK------SGEM-IFEKIISGMYL 290 (465)
Q Consensus 255 ~Na~yie~~~~i~k~~~~--------~~~------~g~~-~fEkm~SG~YL 290 (465)
++++++.+++.+.+.++. +++ .|.. |+|.++|+..|
T Consensus 129 iG~~ii~~g~i~~G~~~~aGeigh~~~~~~~~~c~cG~~GClE~~~S~~Al 179 (179)
T PF00480_consen 129 IGAGIIINGKIYRGSNGFAGEIGHMPVDPNGEPCYCGNRGCLETYASGRAL 179 (179)
T ss_dssp EEEEEEETTEEETTTTS-TTGGGGSBSSTTSSB-TTSSBSBHHHHHSHHHH
T ss_pred CCcceecccccccCCCccccceeeeeccCCCCcCCCCCcCcHHHhhChhhC
Confidence 999999999888776542 122 2333 99999999765
No 22
>PTZ00288 glucokinase 1; Provisional
Probab=99.52 E-value=4.6e-12 Score=131.39 Aligned_cols=284 Identities=18% Similarity=0.112 Sum_probs=168.4
Q ss_pred eEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCCcccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCcceeeee
Q 012386 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFT 175 (465)
Q Consensus 96 ~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG~t 175 (465)
++++.|+||||.|+++.++...+....... .++.+ ++..+..++.+++++.+....+.... . .......|.
T Consensus 27 ~~~~~DiGgt~~R~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~-~----~~~~~a~iA 97 (405)
T PTZ00288 27 IFVGCDVGGTNARVGFAREVQHDDSGVHII--YVRFN--VTKTDIRELLEFFDEVLQKLKKNLSF-I----QRVAAGAIS 97 (405)
T ss_pred eEEEEEecCCceEEEEEeccCCCCCceeEE--EEecc--cccccHHHHHHHHHHHHHHHHhcCcc-c----cCcCeEEEE
Confidence 799999999999999999832111122111 34454 11245667888888877776553210 0 234556888
Q ss_pred eecccccccCCceEEeccCCccccCCCCCCcHHHHHHHHHHHcCCCeeEEEEEechHHHhhccccc--------------
Q 012386 176 FSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH-------------- 241 (465)
Q Consensus 176 fSfPv~q~~i~~g~Li~wtKgF~~~~~~g~dv~~~L~~al~~~gl~v~v~alvNDtvatlla~~y~-------------- 241 (465)
..+|+....+ .|+..+|+..+.+++. +- .+ | ++ .-+.++||=.|..++....
T Consensus 98 vAGPV~~~~~-~~~~~~~~~~~~lTNl---pw--~i---~---~~--~~~~liNDfeA~aygi~~l~~~~~~~~~f~~~~ 163 (405)
T PTZ00288 98 VPGPVTGGQL-AGPFNNLKGIARLTDY---PV--EL---F---PP--GRSALLNDLEAGAYGVLAVSNAGRLSEYFKVMW 163 (405)
T ss_pred EeCceeCCEe-eccccccccccccCCC---Cc--hh---c---CC--CeEEEEEhHHHHhCcccccChhhcccccccccc
Confidence 8999954321 2345677755555542 11 01 3 44 3369999998888775421
Q ss_pred ------------------CCceEEEEEEccccceeEEccCCCCcccCC------C--CCC-CC-----------------
Q 012386 242 ------------------NKDAIAAVILGTGTNAAYVERAHAIPKWHG------L--LPK-SG----------------- 277 (465)
Q Consensus 242 ------------------~~~~~iglIlGTG~Na~yie~~~~i~k~~~------~--~~~-~g----------------- 277 (465)
+....+.+.+|||.|+|++.+...+.++.. . ++. ++
T Consensus 164 ~~~~~~~l~~~~~~g~~~~~~~~~Vlg~GTGLG~alli~~~l~~G~~~~agEgGHv~~~~~~~~~~~~g~~l~~~l~~~~ 243 (405)
T PTZ00288 164 KGTQWDALSEGKPAGSVIGRGRCMVLAPGTGLGSSLIHYVGVSDQYIVIPLECGHLSISWPANEDSDYVQALAGYLASKA 243 (405)
T ss_pred cccceeeecCCCCCcccCCCCCEEEEEeccceeEEEEECCeecCCcccccccccceeeccCCCCccchhHHHHHHHHhhh
Confidence 223458899999999999998775554432 1 210 11
Q ss_pred ---------ceeeeehhccccHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccCchhhhhcccCCCcCHHHHHHHHhhh
Q 012386 278 ---------EMIFEKIISGMYLGEIVRRVLCRMAEEANFFGDTVPPKLKIPFILRTPHMSAMHHDTSPDLRVVGKKLKDI 348 (465)
Q Consensus 278 ---------~~~fEkm~SG~YLGEi~R~~l~~~~~~~~lf~~~~~~~l~~~~~l~t~~ls~i~~d~s~~~~~~~~il~~~ 348 (465)
..++|.++||+.|..+.+.... . ..++ . -.. ...++.+.
T Consensus 244 ~~~g~~~~~~vs~E~v~SG~GL~~ly~~l~~----~------~~~~-~---~~~-----------------~~a~ia~~- 291 (405)
T PTZ00288 244 LSKGIDSTVYPIYEDIVSGRGLEFNYAYEKR----G------NKPS-A---PLK-----------------EAAEVAKL- 291 (405)
T ss_pred ccccccccCceeEeEEecHHHHHHHHHHHhc----c------CCCc-c---CcC-----------------CHHHHHHH-
Confidence 2389999999999666553211 0 0000 0 000 11122221
Q ss_pred hccCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEecceec-cchhHHH-----HHH
Q 012386 349 LEISNTSLKMRK-LVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFE-HYTKFSA-----CMQ 421 (465)
Q Consensus 349 ~~~~~~~~~d~~-~~~~ia~~V~~RaA~l~aagiaaii~~~~~~~~~~~~~~~~~V~idGsv~~-~~~~f~~-----~l~ 421 (465)
+. ..+..|..++++.+++++.++.+++..++| + .|.+.||+.. ..+.|.+ .++
T Consensus 292 ----------A~~~gD~~A~~al~~f~~~LG~~~~nlal~l~P--------~--~VvIgGGi~~~~~~~l~~~~~~~f~~ 351 (405)
T PTZ00288 292 ----------AKYGSDVAAVKAMKRHYKYLMRLAAEISMQFLP--------L--TVVLMGDNIVYNSFFFDNPENVKQLQ 351 (405)
T ss_pred ----------HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC--------C--EEEEECccHHhhHHHHhccchHHHHH
Confidence 22 256789999999999999999999999999 3 2556665444 3333321 222
Q ss_pred HHH-------HHHhccCCCccEEE-EEeCChhHHHHHHHHHHhc
Q 012386 422 STV-------KELLGEEVSETVVI-EHSNDGSGIGAALLAASHS 457 (465)
Q Consensus 422 ~~l-------~~~~~~~~~~~v~l-~~a~Dgs~iGAAl~Aa~~~ 457 (465)
... .+++. .-.|.+ +...+-+++|||..+...+
T Consensus 352 ~f~~~~k~~r~~~l~---~ipv~~qv~~~~~gL~Gaa~~a~~~~ 392 (405)
T PTZ00288 352 ARITEHKMERLKFLS---RTTFLRQKKSVNLNLLGCLQFGSQLS 392 (405)
T ss_pred HHHhcCccChHHHHh---cCceEEEEeCCCccHHHHHHHHHHhh
Confidence 211 12221 124444 5669999999998876443
No 23
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=99.30 E-value=2.7e-10 Score=112.57 Aligned_cols=268 Identities=20% Similarity=0.236 Sum_probs=158.5
Q ss_pred EEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCCcccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCcceeeeeee
Q 012386 98 YALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFS 177 (465)
Q Consensus 98 LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG~tfS 177 (465)
||||.|||+.|+.+++.+|+ ++.+. ..-|.+....+.++..+.|.+.+.+++.+.+... .+...+.++.+
T Consensus 1 lGIDgGgTkt~~vl~d~~g~---il~~~---~~~~~n~~~~~~~~~~~~i~~~i~~~~~~~~~~~----~~i~~~~~g~a 70 (271)
T PF01869_consen 1 LGIDGGGTKTKAVLVDENGN---ILGRG---KGGGANYNSVGFEEAMENIKEAIEEALSQAGLSP----DDIAAICIGAA 70 (271)
T ss_dssp EEEEECSSEEEEEEEETTSE---EEEEE---EES-TTHHHHHHHHHHHHHHHHHHHHHHHHTTST----TCCCEEEEEEE
T ss_pred CEEeeChheeeeEEEeCCCC---EEEEE---EeCCCCCCCCCcchhhhHHHHHHHHHHHHcCCCc----cccceeeeeEe
Confidence 79999999999999998874 55432 2344444333457778888888899988766432 22223333333
Q ss_pred cccccccCCceEEeccCCccccCCCCCCcHHHHHHHHHHHcCCCeeEEEEEechHHHhhcccccCCceEEEEEEccccce
Q 012386 178 FPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHNKDAIAAVILGTGTNA 257 (465)
Q Consensus 178 fPv~q~~i~~g~Li~wtKgF~~~~~~g~dv~~~L~~al~~~gl~v~v~alvNDtvatlla~~y~~~~~~iglIlGTG~Na 257 (465)
+--.+ +. ..+...+.+.. + +.+.||+...+.+..- +.-|-+|-|||+++
T Consensus 71 G~~~~---------------------~~-~~~~~~~~~~~---~---v~~~~Da~~al~~~~~---~~giv~I~GTGS~~ 119 (271)
T PF01869_consen 71 GYGRA---------------------GD-EQEFQEEIVRS---E---VIVVNDAAIALYGATA---EDGIVVIAGTGSIA 119 (271)
T ss_dssp EEEET---------------------TT-TTHHHHHHHHH---E---EEEEEHHHHHHHHHST---SSEEEEEESSSEEE
T ss_pred eecCc---------------------cc-ccchhhcceEE---E---EEEEHHHHHHhCCCCC---CcEEEEEcCCCceE
Confidence 22111 00 00111122211 4 4899999887777544 46789999999999
Q ss_pred eEEccCCC---CcccCCCCCCCCceeeeehhccccHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccCchhhhhcccCC
Q 012386 258 AYVERAHA---IPKWHGLLPKSGEMIFEKIISGMYLGEIVRRVLCRMAEEANFFGDTVPPKLKIPFILRTPHMSAMHHDT 334 (465)
Q Consensus 258 ~yie~~~~---i~k~~~~~~~~g~~~fEkm~SG~YLGEi~R~~l~~~~~~~~lf~~~~~~~l~~~~~l~t~~ls~i~~d~ 334 (465)
..+.+... +.+|...+. ---||.++ .|++|....++.. +..++....+ ......++.+
T Consensus 120 ~~~~~~g~~~r~gG~G~~~g--------D~GSg~~i---g~~~L~~~~~~~d---~~~~~~~~~~-~~~~~~~A~f---- 180 (271)
T PF01869_consen 120 YGRDRDGRVIRFGGWGHCLG--------DEGSGYWI---GRRALRAVLRELD---GRAEPTPYAK-PASNARIAVF---- 180 (271)
T ss_dssp EEEETTSEEEEEEESCTTTT--------TTTSHHHH---HHHHHHHHHHHHT---TSSTTSHHHH-TT-HHHHHCT----
T ss_pred EEEEcCCcEEEeCCCCCCcC--------CCCcHHHH---HHHHHhHHHHHhc---CccccCcccC-CCChhheehh----
Confidence 99873332 234443222 22244455 4555554443311 1111111000 0011111111
Q ss_pred CcCHHHHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEecceeccch
Q 012386 335 SPDLRVVGKKLKDILEISNTSLKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYT 414 (465)
Q Consensus 335 s~~~~~~~~il~~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~aagiaaii~~~~~~~~~~~~~~~~~V~idGsv~~~~~ 414 (465)
...++ +.++..+..|..|++++++.++.-+.+++.+.+... + .|++-||++++.+
T Consensus 181 ------a~~v~-----------~~a~~gd~~a~~Il~~a~~~la~~i~~~~~~~~~~~------~--~v~l~GGv~~~~~ 235 (271)
T PF01869_consen 181 ------APTVF-----------EAAQQGDEVARDILAEAADELAELIKAVLKRLGPEK------E--PVVLSGGVFKNSP 235 (271)
T ss_dssp ------HHHHH-----------HHHHTTTHHHHHHHHHHHHHHHHHHHHHHHTCTCCC------C--SEEEESGGGGCHH
T ss_pred ------hHHHH-----------HHHHcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCC------C--eEEEECCccCchH
Confidence 11111 336778999999999999999999999999887631 2 2889999998755
Q ss_pred hHHHHHHHHHHHHhccCCCccEEEEEeCChhHHHHHHHH
Q 012386 415 KFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLA 453 (465)
Q Consensus 415 ~f~~~l~~~l~~~~~~~~~~~v~l~~a~Dgs~iGAAl~A 453 (465)
|.+.+++.|++.+... ....+...+.-+.+|||++|
T Consensus 236 -~~~~l~~~l~~~~~~~--~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 236 -LVKALRDALKEKLPKV--PIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp -HHHHHGGGS-HHHHCC--TCECECCGSSHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhcCCC--ceEECCCCCccHHHHHHHhC
Confidence 5566777776665432 22345667889999999986
No 24
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=99.26 E-value=2.5e-09 Score=103.68 Aligned_cols=309 Identities=17% Similarity=0.213 Sum_probs=178.2
Q ss_pred ceeEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCCcccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCcceee
Q 012386 94 KGLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELG 173 (465)
Q Consensus 94 ~G~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG 173 (465)
.+.|.++|=|+|.-|+.+|+..++ +..+.+ .-.+..-..+.+..-+.|++.|.+...+.+.+. +.....+|
T Consensus 2 ~~~y~GvEGgaT~s~~Vivd~~~~---~~~~a~---~~~Tnh~~ig~~~~~~rie~~i~~A~~k~g~d~---~~~lr~lg 72 (336)
T KOG1794|consen 2 KDFYGGVEGGATCSRLVIVDEDGT---ILGRAV---GGGTNHWLIGSTTCASRIEDMIREAKEKAGWDK---KGPLRSLG 72 (336)
T ss_pred CceeEeecCCcceeEEEEECCCCC---EeeEee---ccccccccCCchHHHHHHHHHHHHHHhhcCCCc---cCccceee
Confidence 468999999999999999998774 443321 111111111234455666666666655555432 13367888
Q ss_pred eeeecccccccCCceEEeccCCccccCCCCCCcHHHHHHHHHHHcCCCeeEEEEEechHHHhhcccccCCceEEEEEEcc
Q 012386 174 FTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHNKDAIAAVILGT 253 (465)
Q Consensus 174 ~tfSfPv~q~~i~~g~Li~wtKgF~~~~~~g~dv~~~L~~al~~~gl~v~v~alvNDtvatlla~~y~~~~~~iglIlGT 253 (465)
+.+|+- +|.. | +.++++.|++.+. --++=..|.||+.+++++. +.+...=|-+|-||
T Consensus 73 L~lSg~-d~e~----------~--------~~~lv~~~R~~fp---s~ae~~~v~sDa~~sl~a~-t~g~~~GiVLiaGT 129 (336)
T KOG1794|consen 73 LGLSGT-DQED----------K--------NRKLVTEFRDKFP---SVAENFYVTSDADGSLAAA-TPGGEGGIVLIAGT 129 (336)
T ss_pred eecccC-Cchh----------H--------HHHHHHHHHHhcc---chhheeeeehhHHHHHhhc-CCCCCCcEEEEecC
Confidence 888875 3321 1 3556666666552 1123358999999999886 55556668899999
Q ss_pred ccceeEEccCCCCc---ccCCCCCCCCceeeeehhccccHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccCchhhhhc
Q 012386 254 GTNAAYVERAHAIP---KWHGLLPKSGEMIFEKIISGMYLGEIVRRVLCRMAEEANFFGDTVPPKLKIPFILRTPHMSAM 330 (465)
Q Consensus 254 G~Na~yie~~~~i~---k~~~~~~~~g~~~fEkm~SG~YLGEi~R~~l~~~~~~~~lf~~~~~~~l~~~~~l~t~~ls~i 330 (465)
|+|+=.+.+..... +|.+.+-..| |+.|+ .|.++.-....-.=|+.. +.++ ..-...|...
T Consensus 130 gs~crl~~~DGs~~~~ggwg~~iGd~G--------Saywi---a~~Avq~vfda~dg~e~~-~~~i----~~v~~tif~~ 193 (336)
T KOG1794|consen 130 GSNCRLVNPDGSEKGAGGWGHMIGDGG--------SAYWI---ARQAVQMVFDAEDGFENM-MDKI----KDVKQTIFKH 193 (336)
T ss_pred CceeEEECCCCCccCCCCCCCccCCCc--------chhhh---hhhhhhheeehhcCcccc-cchH----HHHHHHHHHH
Confidence 99987776644433 3333332222 33344 444443322110001100 0000 0000111111
Q ss_pred ccCCCcCHHHHHHHHhhhhcc---CCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEE
Q 012386 331 HHDTSPDLRVVGKKLKDILEI---SNTS---LKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIA 404 (465)
Q Consensus 331 ~~d~s~~~~~~~~il~~~~~~---~~~~---~~d~~~~~~ia~~V~~RaA~l~aagiaaii~~~~~~~~~~~~~~~~~V~ 404 (465)
...++ .++.....+.+ |.- ...+ .+.+++++++++.|.++|+..+|--+.|++..+.|... .....-|.
T Consensus 194 ~~l~d-~l~ml~~~Ys~-f~k~riA~f~~kla~~ae~Gd~~~~~ifr~Ag~~Lg~~V~aVl~~l~~~~k---~g~~l~Iv 268 (336)
T KOG1794|consen 194 FNLRD-RLQMLEHLYSD-FDKHRIALFTEKLAEHAEIGDPLSAEIFRNAGETLGRHVVAVLPQLPPTLK---KGKTLPIV 268 (336)
T ss_pred cCCCC-HHHHHHHHHhc-chHHHHHHHHHHHHhhhhccCHHHHHHHHHHHHHHHHHHHHHHhhcCchhc---ccCcceEE
Confidence 11110 00011000000 000 0000 14478899999999999999999999999999988432 11245688
Q ss_pred EecceeccchhHHHHHHHHHHHHhccCCCccEEEEEeCChhHHHHHHHHHHhcc
Q 012386 405 LDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHSQ 458 (465)
Q Consensus 405 idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l~~a~Dgs~iGAAl~Aa~~~~ 458 (465)
+-|||+..++.+.+-....+... +.-+.+++..-.+.|-+|||++||-...
T Consensus 269 ~vG~V~~Sw~~l~~Gfl~sls~~---~~f~~~~l~~~k~ssAvgAA~laa~~~~ 319 (336)
T KOG1794|consen 269 CVGGVFDSWDLLQEGFLDSLSDT---RGFERVELYRPKESSAVGAAILAASLDN 319 (336)
T ss_pred EEcchhhHHHHHHHHHHHHhhcc---cCccceEEEeecccchHHHHHHhhhhcc
Confidence 99999999998887777766552 2235678877789999999999986543
No 25
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.
Probab=99.01 E-value=8.2e-09 Score=104.25 Aligned_cols=273 Identities=19% Similarity=0.198 Sum_probs=147.7
Q ss_pred EEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCCcccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCcceeeeeee
Q 012386 98 YALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFS 177 (465)
Q Consensus 98 LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG~tfS 177 (465)
|+-|+||||.|+++++..+...++... ++|+.. +...|.+. |.+|+++..... .+.....|.+.
T Consensus 1 Lv~DIGGTn~Rlal~~~~~~~~~~~~~--~~~~~~------~~~s~~~~----l~~~l~~~~~~~----~~p~~~~iavA 64 (316)
T PF02685_consen 1 LVADIGGTNTRLALAEPDGGPLQLIDI--RRYPSA------DFPSFEDA----LADYLAELDAGG----PEPDSACIAVA 64 (316)
T ss_dssp EEEEEETTEEEEEEEECTCGG-EEEEE--EEEEGC------CCCHHHHH----HHHHHHHTCHHH----TCEEEEEEEES
T ss_pred CeEEeCcccEEEEEEEcCCCCcccccc--EEEecC------CcCCHHHH----HHHHHHhcccCC----CccceEEEEEe
Confidence 577999999999999987753223322 233322 23344444 455555321100 23566999999
Q ss_pred cccccccCCceEEeccCCccccCCCCCCcHHHHHHHHHHHcCCCeeEEEEEechHHHhhccccc-------------C-C
Q 012386 178 FPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH-------------N-K 243 (465)
Q Consensus 178 fPv~q~~i~~g~Li~wtKgF~~~~~~g~dv~~~L~~al~~~gl~v~v~alvNDtvatlla~~y~-------------~-~ 243 (465)
+|+....+.- ++..|+ .+ .+.|++.| +++ -+.++||=.|..++--.. . .
T Consensus 65 GPV~~~~~~l-TN~~W~----------i~-~~~l~~~l---g~~--~v~liNDfeA~a~gl~~L~~~~l~~l~~g~~~~~ 127 (316)
T PF02685_consen 65 GPVRDGKVRL-TNLPWT----------ID-ADELAQRL---GIP--RVRLINDFEAQAYGLPALDPEDLVTLQPGEPDPG 127 (316)
T ss_dssp S-EETTCEE--SSSCCE----------EE-HHHCHCCC---T-T--CEEEEEHHHHHHHHHHHHHHCCECCHCCEESSTT
T ss_pred cCccCCEEEe-cCCCcc----------cc-HHHHHHHh---CCc--eEEEEcccchheeccCCCCHHHeeeccCCCCCCC
Confidence 9997533211 223565 33 23344444 665 259999998887765431 1 2
Q ss_pred ceEEEEEEccccceeEEccCCCC----cccCCC--CCCC---------------CceeeeehhccccHHHHHHHHHHHHh
Q 012386 244 DAIAAVILGTGTNAAYVERAHAI----PKWHGL--LPKS---------------GEMIFEKIISGMYLGEIVRRVLCRMA 302 (465)
Q Consensus 244 ~~~iglIlGTG~Na~yie~~~~i----~k~~~~--~~~~---------------g~~~fEkm~SG~YLGEi~R~~l~~~~ 302 (465)
....-+=.|||.|.|++.+...- |.=.|. +++. +...+|..+||+.|..|.+-.....
T Consensus 128 ~~~~Vig~GTGLG~a~l~~~~~~~~v~~sEgGH~~fap~~~~e~~l~~~l~~~~~~vs~E~vlSG~GL~~ly~~l~~~~- 206 (316)
T PF02685_consen 128 GPRAVIGPGTGLGVALLVPDGDGYYVLPSEGGHVDFAPRTDEEAELLRFLRRRYGRVSVERVLSGRGLENLYRFLAGER- 206 (316)
T ss_dssp S-EEEEEESSSEEEEEEEEETTEEEEEEE-GGGSB---SSHHHHHHHHHHHHHCTS-BHHHCSSHHHHHHHHHHHHCCT-
T ss_pred CcEEEEEcCCCcEEEEEEecCCceEeCCCccccccCCCCCHHHHHHHHHHHHhcCCceeEeecchhhHHHHHHHHHhcc-
Confidence 34444557899999999875421 111111 1111 2238899999999966544332110
Q ss_pred hcccCCCCCCCCCCCCCCccCchhhhhcccCCCcCHHHHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012386 303 EEANFFGDTVPPKLKIPFILRTPHMSAMHHDTSPDLRVVGKKLKDILEISNTSLKMRKLVVELCDIVATRGARLSAAGIV 382 (465)
Q Consensus 303 ~~~~lf~~~~~~~l~~~~~l~t~~ls~i~~d~s~~~~~~~~il~~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~aagia 382 (465)
..++. .. ...+|.+.. .+..+.+|...++...++++....
T Consensus 207 --------~~~~~-----~~-----------------~~~~I~~~A----------~~~~d~~a~~al~~f~~~lg~~ag 246 (316)
T PF02685_consen 207 --------GAEPP-----LL-----------------SAAEISAAA----------LEGGDPLAREALDLFARILGRVAG 246 (316)
T ss_dssp --------T--S--------------------------HHHHHHHH----------HCT--HHHHHHHHHHHHHHHHHHH
T ss_pred --------CCCCC-----CC-----------------CHHHHHHHH----------HcCCCHHHHHHHHHHHHHHHHHHH
Confidence 00000 01 122222220 123568999999999999999999
Q ss_pred HHHHHhCCCCcCCCCCceEEEEEecceeccchhHHH--HHHHHHHHHhcc--C--CCccEEEEEeCChhHHHHHHHHH
Q 012386 383 GILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSA--CMQSTVKELLGE--E--VSETVVIEHSNDGSGIGAALLAA 454 (465)
Q Consensus 383 aii~~~~~~~~~~~~~~~~~V~idGsv~~~~~~f~~--~l~~~l~~~~~~--~--~~~~v~l~~a~Dgs~iGAAl~Aa 454 (465)
.+.-.+.+. . -|=+.||+..+...+.+ ...+.+.+. ++ + ..-.|.+...++.+++|||..|.
T Consensus 247 dlaL~~~a~-------g--GvyiaGGI~~~~~~~l~~~~F~~~F~~k-g~~~~~l~~iPv~li~~~~~gL~Gaa~~a~ 314 (316)
T PF02685_consen 247 DLALTFLAR-------G--GVYIAGGIAPRLLPLLDESAFREAFEDK-GRMSDLLEDIPVYLITDPDAGLLGAAAYAR 314 (316)
T ss_dssp HHHHHHT-T-------C--EEEEE-TTGGGGHHHHHCSSHHHHHH---GGGHHHHTT--EEEE--S-HHHHHHHHHHH
T ss_pred HHHHHhCCC-------e--eEEEecchhhHHHHHcChhHHHHHHhcc-CCcHHHHhcCcEEEEeCCCHHHHHHHHHHh
Confidence 999888873 2 36689999877765444 122222111 10 0 12367788889999999998874
No 26
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=98.99 E-value=4.6e-08 Score=100.21 Aligned_cols=261 Identities=14% Similarity=0.150 Sum_probs=144.6
Q ss_pred EEEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCCcccCCcchHHHHHH---HHHHHHHHhhCCCCCCCCCCcceee
Q 012386 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIA---AALAKFVATEGEGFHVSPGRQRELG 173 (465)
Q Consensus 97 ~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia---~~I~~fl~~~~~~~~~~~~~~~~lG 173 (465)
.|+|..|||++|+++++-++. +..+.. ....+++ ++++.+.+.+. +.|.+++++++... .+...+
T Consensus 2 il~in~Gsts~k~alf~~~~~---~~~~~~--~~~~~~~--~~~~~~~~q~~~r~~~i~~~l~~~~~~~----~~i~av- 69 (351)
T TIGR02707 2 ILVINPGSTSTKLAVFEDERP---LFEETL--RHSVEEL--GRFKNVIDQFEFRKQVILQFLEEHGISI----SKLDAV- 69 (351)
T ss_pred EEEEecCchhheEEEEeCCCc---eeeeee--cCCHHHh--cccccHHHHHHHHHHHHHHHHHHcCCCc----ccccEE-
Confidence 689999999999999988663 443321 1111222 45667788888 88889998765421 234444
Q ss_pred eeeecccccccCCceE-Ee------ccCCccccCCCCCCcHHHHHHHHHHH-cCCCeeEEEEEec---------hHHHhh
Q 012386 174 FTFSFPVRQTSIASGD-LI------KWTKGFSIEDTVGEDVVGELTKAMER-IGLDMRVAALVND---------TIGTLA 236 (465)
Q Consensus 174 ~tfSfPv~q~~i~~g~-Li------~wtKgF~~~~~~g~dv~~~L~~al~~-~gl~v~v~alvND---------tvatll 236 (465)
..-++|++.. .-|. ++ .-........ =.++..++-..+.+ .++|. ++.|| +..+.+
T Consensus 70 ~~RgG~~~~v--~Gg~~~v~~~~~~~l~~~~~~~~--~hn~~~~~~~~~~~~~~~p~---~vfDt~fh~~~~~~a~~~al 142 (351)
T TIGR02707 70 VGRGGLLKPI--PGGTYLVNEAMLEDLKSGKRGEH--ASNLGAIIANELADELNIPA---YIVDPVVVDEMEDVARISGL 142 (351)
T ss_pred EECCCCCcee--cceeEEECHHHHHHHHhcCCCCC--CCCHHHHHHHHHHHHcCCCE---EEcCChhhhcChHHHHHhcc
Confidence 3344454321 1111 00 0000000000 11222222222222 36775 57777 555555
Q ss_pred ccc---------------------c-cC--CceEEEEEEccccceeEEccCCCCcccCCCCCC-------CCcee---ee
Q 012386 237 GGR---------------------Y-HN--KDAIAAVILGTGTNAAYVERAHAIPKWHGLLPK-------SGEMI---FE 282 (465)
Q Consensus 237 a~~---------------------y-~~--~~~~iglIlGTG~Na~yie~~~~i~k~~~~~~~-------~g~~~---fE 282 (465)
.+. . .+ ..+.|.+.||||+++|.+.+++.+.+..+.-++ .|.+. ..
T Consensus 143 pe~~RrygfHgls~~~v~~~~~~~~g~~~~~~~~I~~hLGtGig~~ai~~Gk~vdgs~G~agEg~~~~tr~G~id~~~~~ 222 (351)
T TIGR02707 143 PEIERKSIFHALNQKAVARRIAKELGKRYEEMNLIVAHMGGGISVAAHRKGRVIDVNNALDGEGPFSPERSGTLPLGDLV 222 (351)
T ss_pred chhhhhhchhhhhHHHHHHHHHHHcCCCcccCCEEEEEeCCCceeeeEECCEEEEcCCCCCCcCCcccCccCCCCchhHH
Confidence 433 0 12 348999999999999999999887765552211 12110 00
Q ss_pred ehh-cc-ccHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccCchhhhhcccCCCcCHHHHHHHHhhhhccCCCCHHHHH
Q 012386 283 KII-SG-MYLGEIVRRVLCRMAEEANFFGDTVPPKLKIPFILRTPHMSAMHHDTSPDLRVVGKKLKDILEISNTSLKMRK 360 (465)
Q Consensus 283 km~-SG-~YLGEi~R~~l~~~~~~~~lf~~~~~~~l~~~~~l~t~~ls~i~~d~s~~~~~~~~il~~~~~~~~~~~~d~~ 360 (465)
.++ .| +-.-|+ ...+.+.+.|.+ +. . +.| .+++++. ++
T Consensus 223 ~~~~~~~~s~~el----~~~l~~~sGl~~--------------------~~-g-s~d---~reI~~~-----------a~ 262 (351)
T TIGR02707 223 DLCYSGKYTKEEM----KKKIVGNGGLVA--------------------YL-G-TND---AREVEKR-----------IE 262 (351)
T ss_pred HHHhcCCCCHHHH----HHHHHhccCccc--------------------cc-C-CCC---HHHHHHH-----------HH
Confidence 000 00 000010 111111111110 00 0 011 2223322 45
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCcCCCCCceEEEEEecceeccchhHHHHHHHHHHHH
Q 012386 361 LVVELCDIVATRGARLSAAGIVGILKKL--GRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKEL 427 (465)
Q Consensus 361 ~~~~ia~~V~~RaA~l~aagiaaii~~~--~~~~~~~~~~~~~~V~idGsv~~~~~~f~~~l~~~l~~~ 427 (465)
.+++.|+.+++..++.++.+|++++..+ +| + .|+++||+.+. +.|++.+.+.++.+
T Consensus 263 ~GD~~A~~a~d~~~~~la~~Ia~l~~~l~g~p--------D--~IV~gGGI~e~-~~l~~~I~~~l~~~ 320 (351)
T TIGR02707 263 AGDEKAKLILDAMAYQIAKEIGKMAVVLKGKV--------D--AIVLTGGLAYS-KYFVSEIIKRVSFI 320 (351)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--------C--EEEEcchhhcC-HHHHHHHHHHHHhh
Confidence 6778899999999999999999999999 55 4 68899999874 67889999988776
No 27
>PRK03011 butyrate kinase; Provisional
Probab=98.90 E-value=2.3e-07 Score=95.37 Aligned_cols=283 Identities=14% Similarity=0.173 Sum_probs=158.6
Q ss_pred eEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCC-Cccc-CCcchHHHHHHHHHHHHHHhhCCCCCCCCCCcceee
Q 012386 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPP-HLMT-GSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELG 173 (465)
Q Consensus 96 ~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~-~~~~-~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG 173 (465)
+.|+|+-|.|..|+++.+-.. .+..+. ...+. ++.. .+.-+=++|=.+.|.+++++++... .+...+|
T Consensus 3 ~il~inpgststk~a~~~~~~---~~~~~~---~~h~~~~~~~~~~~~~q~~~r~~~i~~~l~~~g~~~----~~l~av~ 72 (358)
T PRK03011 3 RILVINPGSTSTKIAVFEDEK---PIFEET---LRHSAEELEKFKTIIDQYEFRKQAILDFLKEHGIDL----SELDAVV 72 (358)
T ss_pred EEEEEcCCCchheEEEEcCCc---eeeeec---cccCHHHHhcCCCccchHHHHHHHHHHHHHHcCCCh----hcceEEE
Confidence 579999999999999995322 233221 22221 1111 2233456777788888888876432 2233332
Q ss_pred eeeeccccc--cc---CCceEEeccCCccccCCCCCCcHHHHHHHHHHH-cCCCeeEEEEEec-----------------
Q 012386 174 FTFSFPVRQ--TS---IASGDLIKWTKGFSIEDTVGEDVVGELTKAMER-IGLDMRVAALVND----------------- 230 (465)
Q Consensus 174 ~tfSfPv~q--~~---i~~g~Li~wtKgF~~~~~~g~dv~~~L~~al~~-~gl~v~v~alvND----------------- 230 (465)
. =.+.++. .+ ++...+-.-.+.- +...=.++..++...+.+ .++|+ +++|+
T Consensus 73 ~-RgG~~~~v~gG~~~v~~~~~~~l~~~~--~~~~~~nl~~~~a~~~~~~~~~p~---~v~D~~~~~~~~~~a~~~~lp~ 146 (358)
T PRK03011 73 G-RGGLLKPIPGGTYRVNEAMLEDLKNGK--YGEHASNLGAIIAYEIAKELGIPA---FIVDPVVVDEMEPVARISGLPE 146 (358)
T ss_pred E-cCCCCcccCCCCEEcCHHHHHHHHhcC--CCCCCCCHHHHHHHHHHHhcCCCE---EEECCcccccCCHHHHHcCCCC
Confidence 2 2222221 00 1111110000000 001112344444444433 47784 78888
Q ss_pred ---------hHHHhhcccc-----c--CCceEEEEEEccccceeEEccCCCCcccCCCCC-------CCCce----eeee
Q 012386 231 ---------TIGTLAGGRY-----H--NKDAIAAVILGTGTNAAYVERAHAIPKWHGLLP-------KSGEM----IFEK 283 (465)
Q Consensus 231 ---------tvatlla~~y-----~--~~~~~iglIlGTG~Na~yie~~~~i~k~~~~~~-------~~g~~----~fEk 283 (465)
.+--+++++| . +..+.|.+.+|||+++|.+.+++.+.+..+.-. ..|.+ ..+.
T Consensus 147 i~R~~gfHgln~~~va~~~a~~~g~~~~~~n~I~~hLGtGig~gai~~Gk~idgs~g~agEG~~~~~R~G~l~~~~~~~~ 226 (358)
T PRK03011 147 IERKSIFHALNQKAVARRVAKELGKKYEELNLIVAHLGGGISVGAHRKGRVIDVNNALDGEGPFSPERAGGLPVGDLVEL 226 (358)
T ss_pred cceeecchHHhHHHHHHHHHHHhCCCcccCcEEEEEeCCCceeeEEECCEEEecCCccCCCCCcccCcccCcCcHHHHHH
Confidence 5555666655 1 345899999999999999999988876554210 12222 1122
Q ss_pred hhccccHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccCchhhhhcccCCCcCHHHHHHHHhhhhccCCCCHHHHHHHH
Q 012386 284 IISGMYLGEIVRRVLCRMAEEANFFGDTVPPKLKIPFILRTPHMSAMHHDTSPDLRVVGKKLKDILEISNTSLKMRKLVV 363 (465)
Q Consensus 284 m~SG~YLGEi~R~~l~~~~~~~~lf~~~~~~~l~~~~~l~t~~ls~i~~d~s~~~~~~~~il~~~~~~~~~~~~d~~~~~ 363 (465)
..+|.|=. ..+...+.+.+.+.+ + . . +.| .+++++. ++.++
T Consensus 227 ~~~g~~s~---~~l~~~l~~~~Gl~~----------~---------~--g-s~d---~reV~~~-----------a~~GD 267 (358)
T PRK03011 227 CFSGKYTK---EELKKKLVGKGGLVA----------Y---------L--G-TND---AREVEKR-----------IEEGD 267 (358)
T ss_pred HhcCCCCH---HHHHHHHHhccCccc----------c---------c--C-CCC---HHHHHHH-----------HHCCC
Confidence 23333311 111111111211111 0 0 0 012 2233332 45677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh--CCCCcCCCCCceEEEEEecceeccchhHHHHHHHHHHHHhccCCCccEEEEEe
Q 012386 364 ELCDIVATRGARLSAAGIVGILKKL--GRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHS 441 (465)
Q Consensus 364 ~ia~~V~~RaA~l~aagiaaii~~~--~~~~~~~~~~~~~~V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l~~a 441 (465)
+.|+.++++.++.+|-+|++++..+ +| + .|+++||+.+ .+.|++.+++.++.+ ..+.+.++
T Consensus 268 ~~A~~ald~~~~~lak~I~~l~~~L~gdp--------D--~IVlgGGI~~-~~~l~~~I~~~l~~~------~pv~i~p~ 330 (358)
T PRK03011 268 EKAKLVYEAMAYQIAKEIGAMAAVLKGKV--------D--AIVLTGGLAY-SKRLVERIKERVSFI------APVIVYPG 330 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCC--------C--EEEEeCcccc-CHHHHHHHHHHHHhh------CCeEEEeC
Confidence 8899999999999999999999999 45 4 6889999998 889999999998865 25788888
Q ss_pred CC---hhHHHHH
Q 012386 442 ND---GSGIGAA 450 (465)
Q Consensus 442 ~D---gs~iGAA 450 (465)
++ +...||+
T Consensus 331 ~~e~~A~a~GA~ 342 (358)
T PRK03011 331 EDEMEALAEGAL 342 (358)
T ss_pred CCHHHHHHHHHH
Confidence 44 4555554
No 28
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=98.82 E-value=1.3e-08 Score=84.67 Aligned_cols=98 Identities=16% Similarity=0.206 Sum_probs=66.3
Q ss_pred eEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCCcccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCcceeeee
Q 012386 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFT 175 (465)
Q Consensus 96 ~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG~t 175 (465)
.+||||+|||++++++++.+|+ +.... + ++.. .+.+++++.+.+.+.++ . ...+|++
T Consensus 2 ~ilgiD~Ggt~i~~a~~d~~g~---~~~~~--~--~~~~---~~~~~~~~~l~~~i~~~----~---------~~~i~Ig 58 (99)
T smart00732 2 RVLGLDPGRKGIGVAVVDETGK---LADPL--E--VIPR---TNKEADAARLKKLIKKY----Q---------PDLIVIG 58 (99)
T ss_pred cEEEEccCCCeEEEEEECCCCC---EecCE--E--EEEe---cCcchHHHHHHHHHHHh----C---------CCEEEEe
Confidence 4899999999999999987774 55322 2 2221 13456666666655542 1 4578999
Q ss_pred eecccccccCCceEEeccCCccccCCCCCCcHHHHHHHHHHHcCCCeeEEEEEechHHHhhc
Q 012386 176 FSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAG 237 (465)
Q Consensus 176 fSfPv~q~~i~~g~Li~wtKgF~~~~~~g~dv~~~L~~al~~~gl~v~v~alvNDtvatlla 237 (465)
+|+|++... ...| . .++.+.|++.+ ++|| .++||+++|..+
T Consensus 59 ~pg~v~g~~-----~~~~---------~-~~l~~~l~~~~---~~pv---~~~nDa~st~~a 99 (99)
T smart00732 59 LPLNMNGTA-----SRET---------E-EAFAELLKERF---NLPV---VLVDERLATVYA 99 (99)
T ss_pred CCcCCCCCc-----CHHH---------H-HHHHHHHHHhh---CCcE---EEEeCCcccccC
Confidence 999884221 1124 2 67888888877 8996 999999988653
No 29
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=98.65 E-value=2.5e-06 Score=84.30 Aligned_cols=273 Identities=18% Similarity=0.154 Sum_probs=159.7
Q ss_pred ceeEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCCcccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCcceee
Q 012386 94 KGLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELG 173 (465)
Q Consensus 94 ~G~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG 173 (465)
.-+||+||=|||..|+.+-+.+|+ ++-+. ..=|.+..+.+.++-+..|.+.|.+.+++.+.++ ..++
T Consensus 4 ~~~~lGVDGGGTkt~a~l~~~~g~---vlg~g---~sGpAN~~~~~~e~A~~ni~~ai~~A~~~aG~~~-------~~i~ 70 (301)
T COG2971 4 MPYFLGVDGGGTKTRAVLADEDGN---VLGRG---KSGPANIQLVGKEEAVRNIKDAIREALDEAGLKP-------DEIA 70 (301)
T ss_pred ccEEEEEccCCcceEEEEEcCCCc---EEEEe---ccCCceecccchHHHHHHHHHHHHHHHHhcCCCH-------HHhC
Confidence 348999999999999999887774 66543 2447776655558899999999999998776432 2222
Q ss_pred eeeecccccccCCceEEeccCCccccCCCCCCcHHHHHHHHHHHcCCCee-EEEEEechHHHhhcccccCCceEEEEEEc
Q 012386 174 FTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMR-VAALVNDTIGTLAGGRYHNKDAIAAVILG 252 (465)
Q Consensus 174 ~tfSfPv~q~~i~~g~Li~wtKgF~~~~~~g~dv~~~L~~al~~~gl~v~-v~alvNDtvatlla~~y~~~~~~iglIlG 252 (465)
+++.+--- .|.+..... +.+ .+.+|.- -+.|+||+..+|.++...+. =+-+|.|
T Consensus 71 ~~~agla~---------------------ag~~~~~~~-~~~-~~~l~~a~~v~v~~Dg~iAl~ga~~~~~--Gii~i~G 125 (301)
T COG2971 71 AIVAGLAL---------------------AGANVEEAR-EEL-ERLLPFAGKVDVENDGLIALRGALGDDD--GIIVIAG 125 (301)
T ss_pred ceeeeeec---------------------cCcchhHHH-HHH-HHhcCccceEEEecChHHHHhhccCCCC--CEEEEec
Confidence 22221100 011111111 111 2245554 56899999999998755433 2456777
Q ss_pred cccceeEEc-cCC---CCcccCCCCCCCCceeeeehhccccHHH-HHHHHHHHHhhcccCCCCCCCCCCCCCCccCchhh
Q 012386 253 TGTNAAYVE-RAH---AIPKWHGLLPKSGEMIFEKIISGMYLGE-IVRRVLCRMAEEANFFGDTVPPKLKIPFILRTPHM 327 (465)
Q Consensus 253 TG~Na~yie-~~~---~i~k~~~~~~~~g~~~fEkm~SG~YLGE-i~R~~l~~~~~~~~lf~~~~~~~l~~~~~l~t~~l 327 (465)
||+ +|+- +.. .+-+|...+- --.||.+||. .++.+++.+ .+..+. -.|....+
T Consensus 126 TGS--i~~~~~gg~~~r~GG~Gf~Ig--------DegSga~ig~~~L~~~lra~-------DG~~~~-----t~L~d~v~ 183 (301)
T COG2971 126 TGS--IGYGRKGGRRERVGGWGFPIG--------DEGSGAWIGREALQEALRAF-------DGRREA-----TPLTDAVM 183 (301)
T ss_pred CCe--EEEEEeCCeeEEecCcCcccc--------ccchHHHHHHHHHHHHHHHh-------cCCccC-----ChHHHHHH
Confidence 774 4432 222 3345544332 4468999974 334444332 222111 12444444
Q ss_pred hhcccCCCcCHHHHHHHHhh-hhcc---CCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCce
Q 012386 328 SAMHHDTSPDLRVVGKKLKD-ILEI---SNTS---LKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQK 400 (465)
Q Consensus 328 s~i~~d~s~~~~~~~~il~~-~~~~---~~~~---~~d~~~~~~ia~~V~~RaA~l~aagiaaii~~~~~~~~~~~~~~~ 400 (465)
..+.. |.+++...... ..+. ...+ .+.++.+|.++..|.++|+.+++..+-++. +... .
T Consensus 184 ~~f~~----d~edlv~~~y~a~~~~~~ia~lap~V~~~A~~GD~~A~~Il~~aa~~i~~~~~~l~-~~~g---------~ 249 (301)
T COG2971 184 AEFNL----DPEDLVAFIYKAGPGDKKIAALAPAVFEAARKGDPVAIRILKEAAAYIATLLEALS-IFNG---------S 249 (301)
T ss_pred HHhCC----CHHHHHHHHHhcCCchHHHHHhhHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHh-cccC---------C
Confidence 44422 22233222221 1110 0011 156889999999999999988887777664 2222 1
Q ss_pred EEEEEecceeccchhHHHHHHHHHHHHhccCCCccEEEEEeCChhHHHHHHHH
Q 012386 401 SVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLA 453 (465)
Q Consensus 401 ~~V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l~~a~Dgs~iGAAl~A 453 (465)
..+.+-||++..++.|...+++.+ ..+ . .+--..||.++|
T Consensus 250 ~~l~l~GG~~~~~~~~~~~~~~~l---~~~-----~-----~~D~~~GA~~~A 289 (301)
T COG2971 250 EKLSLLGGLAPSYPYYLSLFRRAL---LVP-----P-----IGDALSGAVLLA 289 (301)
T ss_pred ceEEEeccccccchhhHHHHHHHh---cCC-----c-----cccHHHHHHHHH
Confidence 257899999999999999998864 211 1 344467877776
No 30
>COG0837 Glk Glucokinase [Carbohydrate transport and metabolism]
Probab=98.22 E-value=0.00021 Score=70.57 Aligned_cols=267 Identities=18% Similarity=0.211 Sum_probs=142.2
Q ss_pred eEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCCcccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCcceeeee
Q 012386 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFT 175 (465)
Q Consensus 96 ~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG~t 175 (465)
..|.=|+||||.|+++|..... +..+. +.|.. .+ |.-+.+.|++|+.++.. ..+...-|.
T Consensus 7 p~LvgDIGGTnaRfaLv~~a~~--~~~~~--~~~~~------~d----ypsle~av~~yl~~~~~------~~~~~a~~A 66 (320)
T COG0837 7 PRLVGDIGGTNARFALVEIAPA--EPLQA--ETYAC------AD----YPSLEEAVQDYLSEHTA------VAPRSACFA 66 (320)
T ss_pred ceEEEecCCcceEEEEeccCCC--Ccccc--ceecc------cC----cCCHHHHHHHHHHHhhc------cCccceEEE
Confidence 4566699999999999987543 12111 11111 11 33456667777776622 235668888
Q ss_pred eecccccccCCceEEeccCCccccCCCCCCcHHHHHHHHHHHcCCCeeEEEEEechHHHhhcccccC-------------
Q 012386 176 FSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHN------------- 242 (465)
Q Consensus 176 fSfPv~q~~i~~g~Li~wtKgF~~~~~~g~dv~~~L~~al~~~gl~v~v~alvNDtvatlla~~y~~------------- 242 (465)
.-+|+.-..+ .=++.+|. .+. +.|++.| |++- +.|+||=.|..++-...+
T Consensus 67 iAgPv~gd~v-~lTN~~W~----------~s~-~~~r~~L---gl~~--v~liNDF~A~A~Ai~~l~~~dl~qigg~~~~ 129 (320)
T COG0837 67 IAGPIDGDEV-RLTNHDWV----------FSI-ARMRAEL---GLDH--LSLINDFAAQALAIPRLGAEDLEQIGGGKPE 129 (320)
T ss_pred EecCccCCEE-eeecCccc----------ccH-HHHHHhc---CCCc--EEEechHHHHHhhccccCHHHHHHhcCCCCC
Confidence 9999864322 22333776 333 3444555 7753 599999999888876531
Q ss_pred CceEEEEEE--ccccceeEEccCCC----CcccCCCC--C---------------CCCceeeeehhccccHHHHHHHHHH
Q 012386 243 KDAIAAVIL--GTGTNAAYVERAHA----IPKWHGLL--P---------------KSGEMIFEKIISGMYLGEIVRRVLC 299 (465)
Q Consensus 243 ~~~~iglIl--GTG~Na~yie~~~~----i~k~~~~~--~---------------~~g~~~fEkm~SG~YLGEi~R~~l~ 299 (465)
++.- =.|+ |||.+.|+..+... +|+=.+.+ + ..|++.-|+.+||+.|-.|-|-...
T Consensus 130 ~~a~-~avlGPGTGLGVa~Lv~~~~~w~~lp~EGGHvdf~P~~~~E~~i~~~l~~~~GrVS~Er~LSG~GL~~iY~al~~ 208 (320)
T COG0837 130 PNAP-RAVLGPGTGLGVAGLVPNGGGWIPLPGEGGHVDFAPRSEREFQILEYLRARFGRVSAERVLSGPGLVNLYRALCA 208 (320)
T ss_pred CCCc-eEEEcCCCCcceEEEEecCCeeEeccCCCccccCCCCCHHHHHHHHHHHHhcCccchhhhcccccHHHHHHHHHH
Confidence 1222 2344 56667777765432 11111211 1 1244588999999999665544332
Q ss_pred HHhhcccCCCCCCCCCCCCCCccCchhhhhcccCCCcCHHHHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 012386 300 RMAEEANFFGDTVPPKLKIPFILRTPHMSAMHHDTSPDLRVVGKKLKDILEISNTSLKMRKLVVELCDIVATRGARLSAA 379 (465)
Q Consensus 300 ~~~~~~~lf~~~~~~~l~~~~~l~t~~ls~i~~d~s~~~~~~~~il~~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~aa 379 (465)
.. +..|. .++...++.. .++ -.+..|+..++...-++++
T Consensus 209 ~~--------~~~~~------~~~p~~It~~-------------al~--------------g~d~~a~~tl~lF~~~lG~ 247 (320)
T COG0837 209 AD--------GRLPE------DLTPAAITER-------------ALA--------------GGDALARETLSLFCAILGR 247 (320)
T ss_pred hh--------CCCcc------cCCHHHHHHH-------------Hhc--------------CCCHHHHHHHHHHHHHHHh
Confidence 21 11121 1111222211 111 1234455555555555555
Q ss_pred HHHHHHHHhCCCCcCCCCCceEEEEEecceeccch------hHHHHHHHHH--HHHhccCCCccEEEEEeCChhHHHHHH
Q 012386 380 GIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYT------KFSACMQSTV--KELLGEEVSETVVIEHSNDGSGIGAAL 451 (465)
Q Consensus 380 giaaii~~~~~~~~~~~~~~~~~V~idGsv~~~~~------~f~~~l~~~l--~~~~~~~~~~~v~l~~a~Dgs~iGAAl 451 (465)
---.+.-.+... . -|=+.||+..+.- .|+++.+++= +.++. .-.|.+....--+++|||.
T Consensus 248 ~AGdlAL~lgar-------G--GVyiaGGI~pril~~l~~s~Fr~~FedKGr~sa~l~---~IPV~vi~~~~~gL~Gaa~ 315 (320)
T COG0837 248 VAGDLALTLGAR-------G--GVYIAGGIVPRILEALKASGFRARFEDKGRMSAYLA---DIPVYVILHPQPGLLGAAA 315 (320)
T ss_pred hHHhHHHHhhcc-------C--cEEEcCCchHhHHHHHhcchHHHHhhhcCchHHHHh---hCCEEEEecCCchHHHHHH
Confidence 555555566552 1 3446788754332 2333332211 11111 1357777788999999987
Q ss_pred HH
Q 012386 452 LA 453 (465)
Q Consensus 452 ~A 453 (465)
.+
T Consensus 316 ~~ 317 (320)
T COG0837 316 AL 317 (320)
T ss_pred Hh
Confidence 75
No 31
>PRK00976 hypothetical protein; Provisional
Probab=98.14 E-value=0.00012 Score=73.77 Aligned_cols=79 Identities=23% Similarity=0.218 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEecceeccchhHHHHHHHHHHHHhccCCCccEEE
Q 012386 359 RKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVI 438 (465)
Q Consensus 359 ~~~~~~ia~~V~~RaA~l~aagiaaii~~~~~~~~~~~~~~~~~V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l 438 (465)
++.++..|+.++++.++.+|.+|++++..++| + .|+++||+.+..+. .+.+.+++.+.+ . .-
T Consensus 233 A~~GD~~A~~aid~~~~~LA~~IAnLi~llDP--------e--~IVLGGGVS~~~e~---~L~~~I~e~l~~----~-~a 294 (326)
T PRK00976 233 YEKGDEKAKLAIDTLALFVAMEIASLLLLNPE--------D--NVVLAGSVGEMDEP---DVSERIKELLDK----K-VL 294 (326)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHHHHHHhcCC--------C--EEEEcCccccCchh---HHHHHHHHHhcc----c-cc
Confidence 56678889999999999999999999999998 4 68999999976533 455566555533 1 34
Q ss_pred EEeCChhHHHHHHHHHH
Q 012386 439 EHSNDGSGIGAALLAAS 455 (465)
Q Consensus 439 ~~a~Dgs~iGAAl~Aa~ 455 (465)
.+.+|++.+|||++|.-
T Consensus 295 ~LG~dAGaiGAA~iA~~ 311 (326)
T PRK00976 295 VLGKESAAIGLALIARD 311 (326)
T ss_pred ccCCchHHHHHHHHHHH
Confidence 55689999999998854
No 32
>PRK13318 pantothenate kinase; Reviewed
Probab=97.67 E-value=6.7e-05 Score=73.83 Aligned_cols=131 Identities=21% Similarity=0.189 Sum_probs=70.6
Q ss_pred EEEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCCcccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCcceeeeee
Q 012386 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTF 176 (465)
Q Consensus 97 ~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG~tf 176 (465)
+|+||+|||++|+++++ ++ +++.+ +.+|.... .+.++++++ +.++++..+... .+...+|+++
T Consensus 2 iL~IDIGnT~iK~al~d-~g---~i~~~----~~~~t~~~-~~~~~~~~~----l~~l~~~~~~~~----~~i~~I~iss 64 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYE-GG---KLVAH----WRISTDSR-RTADEYGVW----LKQLLGLSGLDP----EDITGIIISS 64 (258)
T ss_pred EEEEEECCCcEEEEEEE-CC---EEEEE----EEEeCCCC-CCHHHHHHH----HHHHHHHcCCCc----ccCceEEEEE
Confidence 78999999999999998 44 35532 34444332 244555544 455555443211 1244555555
Q ss_pred ecccccccCCceEEec-cCCccccCCCCCCc-HHHHHHHHHHHcCCCeeEEEEEec--------hHHHhhcccccCCceE
Q 012386 177 SFPVRQTSIASGDLIK-WTKGFSIEDTVGED-VVGELTKAMERIGLDMRVAALVND--------TIGTLAGGRYHNKDAI 246 (465)
Q Consensus 177 SfPv~q~~i~~g~Li~-wtKgF~~~~~~g~d-v~~~L~~al~~~gl~v~v~alvND--------tvatlla~~y~~~~~~ 246 (465)
=-|-....+ ...+.. |. ..+ +....+..+ ++++ .+.|| ..+..+.+.|.+ ..
T Consensus 65 Vvp~~~~~~-~~~~~~~~~---------~~~~~~~~~~~~~---gl~~---~y~np~~lG~DR~a~~~aa~~~~~~--~~ 126 (258)
T PRK13318 65 VVPSVMHSL-ERMCRKYFN---------IEPLVVVGPGVKT---GINI---KVDNPKEVGADRIVNAVAAYELYGG--PL 126 (258)
T ss_pred ecCchHHHH-HHHHHHHhC---------CCCeEEECCCcCC---CCce---ecCChhhcchHHHHHHHHHHHHcCC--CE
Confidence 223211011 011111 21 111 112222222 5664 78888 566666666644 67
Q ss_pred EEEEEccccceeEEcc
Q 012386 247 AAVILGTGTNAAYVER 262 (465)
Q Consensus 247 iglIlGTG~Na~yie~ 262 (465)
+-+-+||++...++..
T Consensus 127 ivid~GTA~t~d~v~~ 142 (258)
T PRK13318 127 IVVDFGTATTFDVVSA 142 (258)
T ss_pred EEEEcCCceEEEEEcC
Confidence 8999999999999944
No 33
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=97.28 E-value=0.001 Score=64.60 Aligned_cols=92 Identities=14% Similarity=0.262 Sum_probs=57.4
Q ss_pred eEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCC---cccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCccee
Q 012386 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPH---LMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQREL 172 (465)
Q Consensus 96 ~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~---~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~l 172 (465)
+||+||+|.||+|+++++.+|+ ++...+..++.... ....+++++++.+.+++++.+++.+... .++..|
T Consensus 1 y~lgiDiGTts~K~~l~d~~g~---iv~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~----~~I~aI 73 (245)
T PF00370_consen 1 YYLGIDIGTTSVKAVLFDEDGK---IVASASRPYPYYTPEPGWAEQDPDEIWEAICEALKELLSQAGIDP----EQIKAI 73 (245)
T ss_dssp EEEEEEECSSEEEEEEEETTSC---EEEEEEEEETEBCSSTTEEEE-HHHHHHHHHHHHHHHHHHCTSCG----GGEEEE
T ss_pred CEEEEEEcccceEEEEEeCCCC---EEEEEEEeeeeccccccccccChHHHHHHHHHHHHHHHhhcCccc----ceeEEE
Confidence 6899999999999999997774 66655444433221 1123688999999999999998764321 345556
Q ss_pred eeeeec----ccccccCCceEEeccC
Q 012386 173 GFTFSF----PVRQTSIASGDLIKWT 194 (465)
Q Consensus 173 G~tfSf----Pv~q~~i~~g~Li~wt 194 (465)
||+--. |+++.+-.-.+.+.|.
T Consensus 74 ~is~~~~~~v~~D~~~~pl~~~i~w~ 99 (245)
T PF00370_consen 74 GISGQGHGLVLLDKDGKPLRPAILWM 99 (245)
T ss_dssp EEEE-SSEEEEEETTSSBSSCEE-TT
T ss_pred EeccccCCcceecccccccccccccc
Confidence 555422 3444431122344565
No 34
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=97.21 E-value=0.00051 Score=73.38 Aligned_cols=90 Identities=18% Similarity=0.291 Sum_probs=60.4
Q ss_pred EEEEeCCceEEEEEEEecCCcceeEEEEeeeeec--C-CCcccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCcceeee
Q 012386 98 YALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSI--P-PHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGF 174 (465)
Q Consensus 98 LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~i--p-~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG~ 174 (465)
||||+|.|++|+++++++|+ ++.+.+..++. | +.....+.+++++.+++++++++++.+... .++..||+
T Consensus 1 lgIDiGtt~ik~~l~d~~g~---i~~~~~~~~~~~~~~~g~~e~d~~~~~~~l~~~i~~~~~~~~~~~----~~I~gIgv 73 (481)
T TIGR01312 1 LGIDLGTSGVKALLVDEQGE---VIASGSAPHTVISPHPGWSEQDPEDWWDATEEAIKELLEQASEMG----QDIKGIGI 73 (481)
T ss_pred CceeecCcceEEEEECCCCC---EEEEEeecccccCCCCCCeeeCHHHHHHHHHHHHHHHHHhcCCCc----ccEEEEEE
Confidence 58999999999999999885 66555333331 1 111124578899999999999998765422 45778888
Q ss_pred e--eeccc--ccccCCceEEeccC
Q 012386 175 T--FSFPV--RQTSIASGDLIKWT 194 (465)
Q Consensus 175 t--fSfPv--~q~~i~~g~Li~wt 194 (465)
+ .+.++ +.++---.+.+.|.
T Consensus 74 s~~~~g~v~~d~~g~~l~~~i~W~ 97 (481)
T TIGR01312 74 SGQMHGLVLLDANGEVLRPAILWN 97 (481)
T ss_pred ecCCceeEEECCCcCCCccchhhh
Confidence 8 77877 65432222223486
No 35
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=97.14 E-value=0.015 Score=56.72 Aligned_cols=49 Identities=16% Similarity=0.375 Sum_probs=33.2
Q ss_pred eEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCCcccCCcchHHHHHHHHHHHHHHhhC
Q 012386 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEG 159 (465)
Q Consensus 96 ~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~ 159 (465)
+++|||+|.|++|+++++ +| +++...+ .++ +..++-.++.+.+.+++.+
T Consensus 1 ~~lGIDiGtts~K~vl~d-~g---~il~~~~----~~~-------~~~~~~~~~~l~~~~~~~~ 49 (248)
T TIGR00241 1 ISLGIDSGSTTTKMVLME-DG---KVIGYKW----LDT-------TPVIEETARAILEALKEAG 49 (248)
T ss_pred CEEEEEcChhheEEEEEc-CC---EEEEEEE----ecC-------CCCHHHHHHHHHHHHHHcC
Confidence 478999999999999997 55 3664432 122 2245666777777776544
No 36
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=96.66 E-value=0.15 Score=53.17 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=20.9
Q ss_pred CCCcceeEEEEEeCCceEEEEEEE
Q 012386 90 TGDEKGLFYALDLGGTNFRVLRVQ 113 (465)
Q Consensus 90 ~G~E~G~~LaiDlGGTNlRv~~V~ 113 (465)
.+..+|.|+|||+|+|+.++.+++
T Consensus 139 ~~~~~g~~lGIDiGSTttK~Vl~d 162 (404)
T TIGR03286 139 RERQEGLTLGIDSGSTTTKAVVME 162 (404)
T ss_pred hhccCCEEEEEEcChhheeeEEEc
Confidence 356678999999999999999986
No 37
>PRK13321 pantothenate kinase; Reviewed
Probab=96.61 E-value=0.0032 Score=61.94 Aligned_cols=138 Identities=20% Similarity=0.216 Sum_probs=68.2
Q ss_pred EEEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCCcccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCcceeeeee
Q 012386 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTF 176 (465)
Q Consensus 97 ~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG~tf 176 (465)
+|+||+|||++|+++++ ++ ++... +.+|+... .+.+++++.+.+. +++.+... .+...++++.
T Consensus 2 iL~IDIGnT~ik~gl~~-~~---~i~~~----~~~~T~~~-~~~~~~~~~l~~l----~~~~~~~~----~~i~~i~vss 64 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFD-GD---RLLRS----FRLPTDKS-RTSDELGILLLSL----FRHAGLDP----EDIRAVVISS 64 (256)
T ss_pred EEEEEECCCeEEEEEEE-CC---EEEEE----EEEecCCC-CCHHHHHHHHHHH----HHHcCCCh----hhCCeEEEEe
Confidence 68999999999999998 33 24432 34554432 2455666555554 44332211 2345566665
Q ss_pred ecccccccCCceEEeccCCc-cccCC-CCCCcHHHHHHHHHHHcCCCeeEEEEEechHHHhh--cccccCCceEEEEEEc
Q 012386 177 SFPVRQTSIASGDLIKWTKG-FSIED-TVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLA--GGRYHNKDAIAAVILG 252 (465)
Q Consensus 177 SfPv~q~~i~~g~Li~wtKg-F~~~~-~~g~dv~~~L~~al~~~gl~v~v~alvNDtvatll--a~~y~~~~~~iglIlG 252 (465)
--|-. ...+..+.+. |+++. +.+.+...-++..+ ..| ..|-||-.+.++ .+.|.+ +..+-+-+|
T Consensus 65 Vvp~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~y---~~P---~~lG~DR~a~~~aa~~~~~~-~~~lvid~G 132 (256)
T PRK13321 65 VVPPL-----NYSLESACKRYFGIKPLFVGPGIKTGLKIRY---DNP---REVGADRIVNAVAARRLYPD-RNLIVVDFG 132 (256)
T ss_pred ecccH-----HHHHHHHHHHHhCCCeEEECCCCCCCccccc---CCh---hhccHHHHHHHHHHHHHcCC-CCEEEEECC
Confidence 32311 1111111111 11211 11222212222222 233 368999444444 444533 256777888
Q ss_pred cccceeEEccC
Q 012386 253 TGTNAAYVERA 263 (465)
Q Consensus 253 TG~Na~yie~~ 263 (465)
|=+.--++.+.
T Consensus 133 TA~T~d~v~~~ 143 (256)
T PRK13321 133 TATTFDCVSGK 143 (256)
T ss_pred CceEEEEEcCC
Confidence 88777777543
No 38
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=96.59 E-value=0.0069 Score=65.99 Aligned_cols=73 Identities=16% Similarity=0.281 Sum_probs=51.7
Q ss_pred EEEEEeCCceEEEEEEEecCCcceeEEEEeeeeec--CC-CcccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCcceee
Q 012386 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSI--PP-HLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELG 173 (465)
Q Consensus 97 ~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~i--p~-~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG 173 (465)
+||||+|+|++|+++++.+|+ ++.+.+..+++ |. .....+++++++-+.+++++.+++.+... .++..||
T Consensus 2 ~lgID~GTts~Ka~l~d~~G~---i~~~~~~~~~~~~~~~g~~eqdp~~~~~~~~~~i~~~~~~~~~~~----~~I~~Ig 74 (541)
T TIGR01315 2 YIGVDVGTGSARACIIDSTGD---ILALAAQNIKTWTPSSGLEGQSSVYIWQAICNCVKQVLAESKVDP----NSVKGIG 74 (541)
T ss_pred EEEEEecCcCEEEEEEcCCCC---EEEEEEeeeeeccCCCCcccCCHHHHHHHHHHHHHHHHHHcCCCh----hheEEEE
Confidence 799999999999999998774 66555434442 22 12234688899999999999998754321 3456666
Q ss_pred eee
Q 012386 174 FTF 176 (465)
Q Consensus 174 ~tf 176 (465)
++.
T Consensus 75 is~ 77 (541)
T TIGR01315 75 FDA 77 (541)
T ss_pred ecc
Confidence 665
No 39
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=96.47 E-value=0.0095 Score=64.27 Aligned_cols=73 Identities=12% Similarity=0.263 Sum_probs=49.4
Q ss_pred eEEEEEeCCceEEEEEEEecCCcceeEEEEeeeee--cCCC-cccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCccee
Q 012386 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVS--IPPH-LMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQREL 172 (465)
Q Consensus 96 ~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~--ip~~-~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~l 172 (465)
++||||+|+|++|+++++.+|+ ++.+.+.+++ .|.. ....+.+++++.+.+++++.+++.... .++..|
T Consensus 1 ~~lgiDiGtt~~K~~l~d~~g~---i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~-----~~I~~I 72 (505)
T TIGR01314 1 YMIGVDIGTTSTKAVLFEENGK---IVAKSSIGYPLYTPASGMAEENPEEIFEAVLVTIREVSINLEDE-----DEILFV 72 (505)
T ss_pred CEEEEeccccceEEEEEcCCCC---EEEEEEeecccccCCCCCeeeCHHHHHHHHHHHHHHHHHhCCCc-----CceEEE
Confidence 4799999999999999998774 6665544344 2211 122357789999999999998764321 235555
Q ss_pred eeee
Q 012386 173 GFTF 176 (465)
Q Consensus 173 G~tf 176 (465)
|++-
T Consensus 73 gis~ 76 (505)
T TIGR01314 73 SFST 76 (505)
T ss_pred EEec
Confidence 5543
No 40
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=96.47 E-value=0.0083 Score=64.53 Aligned_cols=61 Identities=21% Similarity=0.371 Sum_probs=44.3
Q ss_pred eEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeec--CCC-cccCCcchHHHHHHHHHHHHHHhhC
Q 012386 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSI--PPH-LMTGSSHELFDYIAAALAKFVATEG 159 (465)
Q Consensus 96 ~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~i--p~~-~~~~~~~~lfd~Ia~~I~~fl~~~~ 159 (465)
++||||+|+|++|+++++.+|+ ++...+..++. |.. ....+.+++++.+.+++++.+++.+
T Consensus 2 ~~lgiDiGtt~iKa~l~d~~g~---~l~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~ 65 (493)
T TIGR01311 2 YILAIDQGTTSSRAIVFDKDGN---IVAIHQKEFTQIFPKPGWVEHDPMEIWESVLSCIAEALAKAG 65 (493)
T ss_pred eEEEEecCCCceEEEEECCCCC---EEEEEeeeccccCCCCCcEeeCHHHHHHHHHHHHHHHHHHcC
Confidence 5899999999999999998774 66554333322 211 1122577899999999999998765
No 41
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=96.31 E-value=0.012 Score=63.70 Aligned_cols=73 Identities=16% Similarity=0.173 Sum_probs=50.4
Q ss_pred eEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeecC-----CCcccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCcc
Q 012386 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIP-----PHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQR 170 (465)
Q Consensus 96 ~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip-----~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~ 170 (465)
++||||+|.|++|+++++.+|+ ++...+..++.+ +.....+.+++++.+.+++++.+++.+.. ..++.
T Consensus 4 ~~lgID~GTts~Ka~l~d~~G~---~l~~~~~~~~~~~~~~~~g~~Eqd~~~~w~~~~~~l~~~~~~~~~~----~~~I~ 76 (520)
T PRK10939 4 YLMALDAGTGSIRAVIFDLNGN---QIAVGQAEWRHLAVPDVPGSMEFDLEKNWQLACQCIRQALQKAGIP----ASDIA 76 (520)
T ss_pred EEEEEecCCCceEEEEECCCCC---EEEEEeccccccCCCCCCCCeeECHHHHHHHHHHHHHHHHHHcCCC----ccceE
Confidence 6899999999999999998874 665554444322 11123367889999999999998765422 12355
Q ss_pred eeeee
Q 012386 171 ELGFT 175 (465)
Q Consensus 171 ~lG~t 175 (465)
.||++
T Consensus 77 aI~~s 81 (520)
T PRK10939 77 AVSAT 81 (520)
T ss_pred EEEEE
Confidence 55554
No 42
>PRK00047 glpK glycerol kinase; Provisional
Probab=96.30 E-value=0.011 Score=63.67 Aligned_cols=61 Identities=23% Similarity=0.349 Sum_probs=44.9
Q ss_pred eEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeec--CCC-cccCCcchHHHHHHHHHHHHHHhhC
Q 012386 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSI--PPH-LMTGSSHELFDYIAAALAKFVATEG 159 (465)
Q Consensus 96 ~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~i--p~~-~~~~~~~~lfd~Ia~~I~~fl~~~~ 159 (465)
++||||+|+|++|+++++.+|+ ++...+..+++ |.. ....+.+++++-+.+++++.+++.+
T Consensus 6 ~~lgiD~GTts~Ka~l~d~~g~---~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~ 69 (498)
T PRK00047 6 YILALDQGTTSSRAIIFDHDGN---IVSVAQKEFTQIFPQPGWVEHDPNEIWASQLSVIAEALAKAG 69 (498)
T ss_pred EEEEEecCCCceEEEEECCCCC---EEEEEeeeccccCCCCCeEeeCHHHHHHHHHHHHHHHHHHcC
Confidence 6899999999999999998875 55554444432 221 1123678899999999999987654
No 43
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=96.27 E-value=0.012 Score=64.05 Aligned_cols=61 Identities=20% Similarity=0.252 Sum_probs=47.0
Q ss_pred eEEEEEeCCceEEEEEEE-ecCCcceeEEEEeeeeec-------C-------CCcccCCcchHHHHHHHHHHHHHHhhC
Q 012386 96 LFYALDLGGTNFRVLRVQ-LGGREGRVVKQEFEEVSI-------P-------PHLMTGSSHELFDYIAAALAKFVATEG 159 (465)
Q Consensus 96 ~~LaiDlGGTNlRv~~V~-l~g~~~~i~~~~~~~~~i-------p-------~~~~~~~~~~lfd~Ia~~I~~fl~~~~ 159 (465)
++||||+|.|+.|+++++ .+|+ ++...+..+++ | ......+++++++-+.+++++.+++.+
T Consensus 2 ~~lgiD~GTss~Ka~l~d~~~G~---~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~~~~~~~~~~ 77 (536)
T TIGR01234 2 YAIGVDFGTLSGRALAVDVATGE---EIATAVEWYRHWVKGQFLPKTGAKLPNDQALQHPADYIEVLEAAIPTVLAELG 77 (536)
T ss_pred eEEEEecCCCceEEEEEECCCCc---EeeeeeeccccccccccCCCccccCCCCccccCHHHHHHHHHHHHHHHHHHcC
Confidence 589999999999999999 8885 66555555552 3 223344688999999999999998754
No 44
>PRK15027 xylulokinase; Provisional
Probab=96.24 E-value=0.015 Score=62.44 Aligned_cols=71 Identities=18% Similarity=0.389 Sum_probs=51.3
Q ss_pred eEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeec--C-CCcccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCccee
Q 012386 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSI--P-PHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQREL 172 (465)
Q Consensus 96 ~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~i--p-~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~l 172 (465)
+|||||+|.|++|+++++.+|+ ++...+..+++ | +.....+.+++++.+.+++++.+++... +++..|
T Consensus 1 ~~lgID~GTts~Ka~l~d~~G~---vva~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~~~~------~~I~aI 71 (484)
T PRK15027 1 MYIGIDLGTSGVKVILLNEQGE---VVASQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKALGDQHSL------QDVKAL 71 (484)
T ss_pred CEEEEEecccceEEEEEcCCCC---EEEEEeecccccCCCCCccccCHHHHHHHHHHHHHHHHHhCCc------cceeEE
Confidence 4899999999999999998774 77666555543 2 1122345788999999999999876421 346667
Q ss_pred eee
Q 012386 173 GFT 175 (465)
Q Consensus 173 G~t 175 (465)
|++
T Consensus 72 ~is 74 (484)
T PRK15027 72 GIA 74 (484)
T ss_pred EEe
Confidence 764
No 45
>PRK10331 L-fuculokinase; Provisional
Probab=95.97 E-value=0.023 Score=60.71 Aligned_cols=60 Identities=18% Similarity=0.222 Sum_probs=43.8
Q ss_pred eEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeec----CC-CcccCCcchHHHHHHHHHHHHHHhh
Q 012386 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSI----PP-HLMTGSSHELFDYIAAALAKFVATE 158 (465)
Q Consensus 96 ~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~i----p~-~~~~~~~~~lfd~Ia~~I~~fl~~~ 158 (465)
++|+||+|.|+.|+++++.+|+ ++...+..++. |. .....+++++++.+.+++++.+++.
T Consensus 3 ~~lgID~GTt~~Ka~l~d~~G~---~~~~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~~~~~~ 67 (470)
T PRK10331 3 VILVLDCGATNVRAIAVDRQGK---IVARASTPNASDIAAENSDWHQWSLDAILQRFADCCRQINSEL 67 (470)
T ss_pred eEEEEecCCCceEEEEEcCCCc---EEEEEecccccccCCCCCCCcccCHHHHHHHHHHHHHHHHHhC
Confidence 6899999999999999998884 66555433331 11 1122367889999999999998753
No 46
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=95.80 E-value=0.034 Score=60.01 Aligned_cols=61 Identities=16% Similarity=0.230 Sum_probs=44.7
Q ss_pred eEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeec--C-CCcccCCcchHHHHHHHHHHHHHHhhC
Q 012386 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSI--P-PHLMTGSSHELFDYIAAALAKFVATEG 159 (465)
Q Consensus 96 ~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~i--p-~~~~~~~~~~lfd~Ia~~I~~fl~~~~ 159 (465)
++|+||+|.|++|+++++.+|+ ++...+..+++ | +.....+.+++++-+.+++++.+++..
T Consensus 3 ~~lgiDiGTts~Ka~l~d~~G~---~v~~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~ 66 (504)
T PTZ00294 3 YIGSIDQGTTSTRFIIFDEKGN---VVSSHQIPHEQITPHPGWLEHDPEEILRNVYKCMNEAIKKLR 66 (504)
T ss_pred EEEEEecCCCceEEEEECCCCC---EEEEEEEeecccCCCCCeEeeCHHHHHHHHHHHHHHHHHHcC
Confidence 6899999999999999998774 66555444432 1 111223577899999999999987654
No 47
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=95.79 E-value=0.03 Score=60.50 Aligned_cols=63 Identities=19% Similarity=0.270 Sum_probs=46.2
Q ss_pred eeEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCC---cccCCcchHHHHHHHHHHHHHHhhC
Q 012386 95 GLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPH---LMTGSSHELFDYIAAALAKFVATEG 159 (465)
Q Consensus 95 G~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~---~~~~~~~~lfd~Ia~~I~~fl~~~~ 159 (465)
.+|||||+|.|+.|+.+++.++. .++......++.... ....+.+++++.+.++|++.+++..
T Consensus 4 ~~~lgIDiGTt~~Kavl~d~~~~--~~~~~~~~~~~~~~~~~g~~e~d~~~~w~~~~~ai~~l~~~~~ 69 (502)
T COG1070 4 KYVLGIDIGTTSVKAVLFDEDGG--EVVATARFENPVSTPQPGWAEQDPDELWQAILEALRQLLEESK 69 (502)
T ss_pred cEEEEEEcCCCcEEEEEEeCCCC--eEEEEeeccccccCCCCCCcccCHHHHHHHHHHHHHHHHHhcc
Confidence 37999999999999999999842 455554333332211 1235689999999999999998753
No 48
>PRK13317 pantothenate kinase; Provisional
Probab=95.77 E-value=1.1 Score=44.56 Aligned_cols=49 Identities=22% Similarity=0.290 Sum_probs=29.3
Q ss_pred EEEEecceeccchhHHHHHHHHHHHHhccCCCccEEEEEeCChhHHHHHHHHH
Q 012386 402 VIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAA 454 (465)
Q Consensus 402 ~V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l~~a~Dgs~iGAAl~Aa 454 (465)
.|.+.||...++|.+++.+.+.++. .. .+-+......-.+-+|||+.+.
T Consensus 225 ~Ivf~G~gla~n~~l~~~l~~~l~~--~~--~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 225 NIVYIGSTLTNNPLLQEIIESYTKL--RN--CTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred eEEEECcccccCHHHHHHHHHHHhc--CC--ceEEecCCCchhHHHHHHHHhh
Confidence 5778886666888888888776532 11 1112223344566778877653
No 49
>PLN02295 glycerol kinase
Probab=95.61 E-value=0.038 Score=59.77 Aligned_cols=62 Identities=19% Similarity=0.257 Sum_probs=45.9
Q ss_pred eEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeec--CC-CcccCCcchHHHHHHHHHHHHHHhhCC
Q 012386 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSI--PP-HLMTGSSHELFDYIAAALAKFVATEGE 160 (465)
Q Consensus 96 ~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~i--p~-~~~~~~~~~lfd~Ia~~I~~fl~~~~~ 160 (465)
++||||+|.|++|+++++.+|+ ++...+..+++ |+ .....+++++++-+.++|++.+++.+.
T Consensus 1 ~vlgID~GTts~Ka~l~d~~G~---~~~~~~~~~~~~~~~~G~~Eqdp~~~w~~~~~~i~~~~~~~~~ 65 (512)
T PLN02295 1 FVGAIDQGTTSTRFIIYDRDAR---PVASHQVEFTQIYPQAGWVEHDPMEILESVLTCIAKALEKAAA 65 (512)
T ss_pred CEEEEecCCCceEEEEECCCCC---EEEEEeecccccCCCCCcEeeCHHHHHHHHHHHHHHHHHHcCC
Confidence 4799999999999999998885 66555444432 21 122346889999999999999987653
No 50
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=95.54 E-value=1.9 Score=43.02 Aligned_cols=46 Identities=17% Similarity=0.266 Sum_probs=31.3
Q ss_pred EEEEecceeccchhHHHHHHHHHHHHhccCCCccEEEEEeCChhHHHHHH
Q 012386 402 VIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAAL 451 (465)
Q Consensus 402 ~V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l~~a~Dgs~iGAAl 451 (465)
.|.+.||....+|..++.+.++++-+- .+-+.+++.+-.+.+|||+
T Consensus 233 ~IvF~Gg~L~~~~~l~~~~~~~~~~~~----~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 233 RIVFIGSFLRNNQLLMKVLSYATNFWS----KKALFLEHEGYSGAIGALL 278 (279)
T ss_pred eEEEECCcccCCHHHHHHHHHHHhhcC----ceEEEECCcchHHHhhhcc
Confidence 588999998999999999999876431 1233344455555566654
No 51
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=95.53 E-value=0.039 Score=58.95 Aligned_cols=59 Identities=15% Similarity=0.260 Sum_probs=43.2
Q ss_pred eEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeec----C-CCcccCCcchHHHHHHHHHHHHHHh
Q 012386 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSI----P-PHLMTGSSHELFDYIAAALAKFVAT 157 (465)
Q Consensus 96 ~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~i----p-~~~~~~~~~~lfd~Ia~~I~~fl~~ 157 (465)
.+|+||+|.|+.|+++++.+|+ ++.+.+.+++. | +.....+.+++++.+.+++++.+.+
T Consensus 2 ~ilgiD~GTss~K~~l~d~~g~---~va~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~ 65 (465)
T TIGR02628 2 VILVLDCGATNLRAIAINRQGK---IVASASTPNATKQAIENNDYHIWDLEAIWQKLADCCQQINSE 65 (465)
T ss_pred eEEEEecCCCcEEEEEEcCCCC---EEEEEecccccCCCCCCCCceeeCHHHHHHHHHHHHHHHHhh
Confidence 4799999999999999998774 66555433331 1 1122335788999999999999864
No 52
>PRK04123 ribulokinase; Provisional
Probab=95.52 E-value=0.046 Score=59.63 Aligned_cols=61 Identities=20% Similarity=0.283 Sum_probs=44.0
Q ss_pred eEEEEEeCCceEEEEEEEe-cCCcceeEEEEeeeeec--------CCC-cccCCcchHHHHHHHHHHHHHHhhC
Q 012386 96 LFYALDLGGTNFRVLRVQL-GGREGRVVKQEFEEVSI--------PPH-LMTGSSHELFDYIAAALAKFVATEG 159 (465)
Q Consensus 96 ~~LaiDlGGTNlRv~~V~l-~g~~~~i~~~~~~~~~i--------p~~-~~~~~~~~lfd~Ia~~I~~fl~~~~ 159 (465)
++||||+|.|+.|+++++. +|+ ++.+.+..++. |.. ....+++++++-+.+++++.+++.+
T Consensus 4 ~~lgiD~GTts~Ka~l~d~~~g~---~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~i~~~~~~~~ 74 (548)
T PRK04123 4 YVIGLDFGTDSVRALLVDCATGE---ELATAVVEYPHWVKGRYLDLPPNQALQHPLDYIESLEAAIPAVLKEAG 74 (548)
T ss_pred EEEEEecCCCceEEEEEECCCCc---EeEEEEeeccccccccccCCCCCceeeCHHHHHHHHHHHHHHHHHHcC
Confidence 6899999999999999995 774 66555444442 211 1123467889999999999887654
No 53
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=95.46 E-value=1 Score=45.14 Aligned_cols=70 Identities=21% Similarity=0.400 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEecceeccchhHHHHHHHHHHHHhccCCCccEE-E
Q 012386 360 KLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVV-I 438 (465)
Q Consensus 360 ~~~~~ia~~V~~RaA~l~aagiaaii~~~~~~~~~~~~~~~~~V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~-l 438 (465)
++..-+|..|.+|. +.++++.+.. + .|.+.||+. +++.+.+.+++.+ +. .+. +
T Consensus 217 dI~aGl~~sia~rv--------~~~~~~~~i~-------~--~v~~~GGva-~N~~l~~al~~~L----g~----~v~~~ 270 (293)
T TIGR03192 217 MVIAAYCQAMAERV--------VSLLERIGVE-------E--GFFITGGIA-KNPGVVKRIERIL----GI----KAVDT 270 (293)
T ss_pred HHHHHHHHHHHHHH--------HHHhcccCCC-------C--CEEEECccc-ccHHHHHHHHHHh----CC----CceeC
Confidence 46667899999983 3344454331 2 368899975 5777777776655 21 222 1
Q ss_pred -EEeCChhHHHHHHHHHH
Q 012386 439 -EHSNDGSGIGAALLAAS 455 (465)
Q Consensus 439 -~~a~Dgs~iGAAl~Aa~ 455 (465)
....-.+-+|||++|.-
T Consensus 271 p~~p~~~GAlGAAL~A~~ 288 (293)
T TIGR03192 271 KIDSQIAGALGAALFGYT 288 (293)
T ss_pred CCCccHHHHHHHHHHHHH
Confidence 12345678899998753
No 54
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=94.06 E-value=3.9 Score=42.23 Aligned_cols=101 Identities=20% Similarity=0.264 Sum_probs=59.4
Q ss_pred CCcceeEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCCcccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCcc
Q 012386 91 GDEKGLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQR 170 (465)
Q Consensus 91 G~E~G~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~ 170 (465)
....+.|||||.|-|+.++.+++.++ .+... |-.++. +.+. -.+.+.+.+++-+... .++.
T Consensus 131 ~~~~~~~LGID~GSTtTK~VLm~d~~---~I~~~----~~~~t~---g~p~-----~~~~l~~~le~l~~~~----~~I~ 191 (396)
T COG1924 131 EYQGMYTLGIDSGSTTTKAVLMEDGK---EILYG----FYVSTK---GRPI-----AEKALKEALEELGEKL----EEIL 191 (396)
T ss_pred hhcCcEEEEEecCCcceeEEEEeCCC---eEEEE----EEEcCC---CChh-----HHHHHHHHHHHcccCh----heee
Confidence 34456899999999999999987655 24432 222222 2222 2455566665544321 2344
Q ss_pred eeeeeeecccccccCCceEEeccCCccccCCCCCCcHHHHHHHHHHHcCCCeeEEEEEechHHHhhcccccCCceE
Q 012386 171 ELGFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHNKDAI 246 (465)
Q Consensus 171 ~lG~tfSfPv~q~~i~~g~Li~wtKgF~~~~~~g~dv~~~L~~al~~~gl~v~v~alvNDtvatlla~~y~~~~~~ 246 (465)
.+|+| ..+ + .++..+| +.+ .++|-+++...+..|..|+..
T Consensus 192 ~~~~T----------------GYG----------R---~~v~~~~---~aD----~~~~Ei~ah~kgA~~f~p~~d 231 (396)
T COG1924 192 GLGVT----------------GYG----------R---NLVGAAL---GAD----KVVVEISAHAKGARYFAPDVD 231 (396)
T ss_pred eeeee----------------ccc----------H---HHhhhhh---cCC----cceeeeehhHHHHHHhCCCCc
Confidence 44443 222 2 3344555 566 678888888899888776655
No 55
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=93.80 E-value=4.1 Score=45.56 Aligned_cols=55 Identities=15% Similarity=0.220 Sum_probs=36.9
Q ss_pred CcHHHHHHHHHHHcCCCeeEEEEEechHHHhhccccc----CCceEEEEEEcccc-ceeEEc
Q 012386 205 EDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH----NKDAIAAVILGTGT-NAAYVE 261 (465)
Q Consensus 205 ~dv~~~L~~al~~~gl~v~v~alvNDtvatlla~~y~----~~~~~iglIlGTG~-Na~yie 261 (465)
..=.+.+.+|.+.-|+++ +.|+|+.+|++++-.+. .+..++-+=+|-|+ ..+.+.
T Consensus 153 ~~qR~a~~~Aa~~AGl~v--~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dvsv~~ 212 (653)
T PTZ00009 153 DSQRQATKDAGTIAGLNV--LRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLT 212 (653)
T ss_pred HHHHHHHHHHHHHcCCce--eEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEEEEEE
Confidence 344667777777678875 79999999999986542 23455555677776 444443
No 56
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=93.59 E-value=0.41 Score=51.38 Aligned_cols=95 Identities=18% Similarity=0.253 Sum_probs=61.9
Q ss_pred ceeEEEEEeCCceEEEEEEE-ecCCcceeEEEEeeeee--cC-CCcccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCc
Q 012386 94 KGLFYALDLGGTNFRVLRVQ-LGGREGRVVKQEFEEVS--IP-PHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQ 169 (465)
Q Consensus 94 ~G~~LaiDlGGTNlRv~~V~-l~g~~~~i~~~~~~~~~--ip-~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~ 169 (465)
...+++||+|-|..|+++++ -+|+ .+....++++ -| ......+++++++-+.+||+...++.... ..
T Consensus 5 ~~~~~gIDvGTtSaR~~v~~~~~~e---~l~~~~~~i~~~~~~~~~~eq~p~eI~~~V~~ci~~~~e~l~~~------~~ 75 (516)
T KOG2517|consen 5 EPVVLGIDVGTTSARALVFNAKNGE---LLSLAQKEITQEFPKEGWVEQDPKEIWQAVCRCIEKACEKLGVL------NI 75 (516)
T ss_pred cceEEEEEcCCCceEEEEEecCCCc---cceeeeeeeeeecCCCCeEEeCHHHHHHHHHHHHHHHHHhhccc------cc
Confidence 45799999999999999998 4443 3322211111 11 12234579999999999999988765532 34
Q ss_pred ceeeeeeecccccccCCceEEeccCCccccCC
Q 012386 170 RELGFTFSFPVRQTSIASGDLIKWTKGFSIED 201 (465)
Q Consensus 170 ~~lG~tfSfPv~q~~i~~g~Li~wtKgF~~~~ 201 (465)
...|++.++-+.|. ...+-|.|.+.-+.
T Consensus 76 ~~~~~~~igv~~qr----~~~v~w~~~tg~p~ 103 (516)
T KOG2517|consen 76 KVVGATCIGVVNQR----EGSVLWNKRTGEPL 103 (516)
T ss_pred cccccEEEEEEecC----CceEEeecCCCCcc
Confidence 55668888888873 23345666554443
No 57
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=93.51 E-value=5.4 Score=40.84 Aligned_cols=277 Identities=16% Similarity=0.222 Sum_probs=139.7
Q ss_pred EEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCCcccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCcceeeeeeec
Q 012386 99 ALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSF 178 (465)
Q Consensus 99 aiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG~tfSf 178 (465)
|||=|-+++.++.++..|+ ++. .++||.+.+...+..+.+.|.+ + ...+. -..|=|++-|+
T Consensus 1 GIDpGT~s~dv~~~dd~g~---v~~----~~~ipt~~v~~~p~~iv~~l~~----~---~~~dl-----Ia~psGyG~pl 61 (343)
T PF07318_consen 1 GIDPGTKSFDVCGLDDDGK---VIF----YFSIPTEEVAKNPSIIVEELEE----F---GDIDL-----IAGPSGYGLPL 61 (343)
T ss_pred CCCCCCCcEEEEEEccCCc---EEE----EeeccHHHhhhCHHHHHHHHHh----c---cCCCE-----EEeCCcCCccc
Confidence 5789999999999988663 553 3578988766556555544433 2 12111 12333444433
Q ss_pred ccccccCCceEEeccCCccccCC-CCCC---cHHHHHHHHHHHcCCCeeE-EEE------------------EechHHHh
Q 012386 179 PVRQTSIASGDLIKWTKGFSIED-TVGE---DVVGELTKAMERIGLDMRV-AAL------------------VNDTIGTL 235 (465)
Q Consensus 179 Pv~q~~i~~g~Li~wtKgF~~~~-~~g~---dv~~~L~~al~~~gl~v~v-~al------------------vNDtvatl 235 (465)
---+ .+.+..+.-+|. ..+ -+|. =+.+++.+ +++.++|+-. =.+ .-|-+++.
T Consensus 62 ~~~~-ei~d~e~~l~tl---~~~~~~g~~~~Glr~~~~~-l~~~~l~~~~iPgVi~LptVP~~RK~N~IDmGTaDKva~a 136 (343)
T PF07318_consen 62 KRIR-EITDREIFLLTL---IEESEVGRRIGGLRKLVRE-LAESNLPAYFIPGVIHLPTVPAWRKINRIDMGTADKVASA 136 (343)
T ss_pred cccc-ccchhhhhceEe---ecccccccccccHHHHHHH-HHhCCCCEEEeCceeccCCCchHhhhcccccCcHhHHHHH
Confidence 2211 122222222221 111 0111 14444433 3555666421 111 12666665
Q ss_pred hcccc---------cCCceEEEEEEccccceeE-EccCCCCcccCCCCCCCCceeeeehhccccHHHHHHHHHHH-Hhhc
Q 012386 236 AGGRY---------HNKDAIAAVILGTGTNAAY-VERAHAIPKWHGLLPKSGEMIFEKIISGMYLGEIVRRVLCR-MAEE 304 (465)
Q Consensus 236 la~~y---------~~~~~~iglIlGTG~Na~y-ie~~~~i~k~~~~~~~~g~~~fEkm~SG~YLGEi~R~~l~~-~~~~ 304 (465)
.-.-| .+..+.|-+=+|.|.|+.. +.+++.+-+..+.+-.+| ...+|.-=||+++++-.. -.+.
T Consensus 137 ~lai~~~~~~~gi~y~~~nfIlvEiG~~yta~iaV~~GkIVDGiggt~g~pG-----~~~~G~lD~Evay~i~~~~~~sK 211 (343)
T PF07318_consen 137 ALAIYDQAEREGIEYREVNFILVEIGSGYTAAIAVKNGKIVDGIGGTIGFPG-----YLSHGALDGEVAYLIGNYSRFSK 211 (343)
T ss_pred HHHHHhhHHhhCCCcccceEEEEEccCCceEEEEEECCeEEccccccccCCc-----cccCCcccHHHHHHhccccccch
Confidence 54222 2345889999999988666 566777777777653444 445555557877665311 1112
Q ss_pred ccCCCCCCCCCCCCCCccCchhhhhcccCCCcCHHHHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012386 305 ANFFGDTVPPKLKIPFILRTPHMSAMHHDTSPDLRVVGKKLKDILEISNTSLKMRKLVVELCDIVATRGARLSAAGIVGI 384 (465)
Q Consensus 305 ~~lf~~~~~~~l~~~~~l~t~~ls~i~~d~s~~~~~~~~il~~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~aagiaai 384 (465)
..+|.+.... +-... .. .+..++--+.-+++....++-.++++
T Consensus 212 ~~lF~gG~~~---------------i~~~~-----e~-----------------~~~~~e~~~~a~ea~~E~i~k~V~~l 254 (343)
T PF07318_consen 212 NDLFSGGAIK---------------IAGID-----EF-----------------AKRLKEDEKCAWEAMIESIVKAVASL 254 (343)
T ss_pred hhhhccCcee---------------eccch-----HH-----------------HHhhhcchhHHHHHHHHHHHHHHHHH
Confidence 2334322110 10000 01 11111111112333444455555555
Q ss_pred HHHhCCCCcCCCCCceEEEEEecceeccchhHHHHHHHHHHHHhccCCCccEEEE----EeCChhHHHHHHHHHH
Q 012386 385 LKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIE----HSNDGSGIGAALLAAS 455 (465)
Q Consensus 385 i~~~~~~~~~~~~~~~~~V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l~----~a~Dgs~iGAAl~Aa~ 455 (465)
+...... + .|.+.|.+. ..|.|.+.+.+.+.++.+.. ...+. .+++ +..|||++|--
T Consensus 255 ~~~~~~~-------~--~IilSGr~~-~~~~~~~~l~~~l~~~~~~~---v~~l~~~~~~aKe-aA~GaAiIA~g 315 (343)
T PF07318_consen 255 LASVPDP-------D--EIILSGRFS-RIPEFRKKLEDRLEDYFPVK---VRKLEGLARKAKE-AAQGAAIIANG 315 (343)
T ss_pred hcccCCC-------C--EEEEecccc-ccHHHHHHHHHHHHhhcccc---eeecccccccchh-hhhhHHHHhhh
Confidence 5554221 2 478899987 68899999999998876521 11221 1244 67799999853
No 58
>PLN02669 xylulokinase
Probab=93.16 E-value=0.33 Score=53.14 Aligned_cols=78 Identities=17% Similarity=0.210 Sum_probs=48.4
Q ss_pred cCCCCCcceeEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeec--CCCc----ccCCcc----------hHHHHHHHH
Q 012386 87 NLPTGDEKGLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSI--PPHL----MTGSSH----------ELFDYIAAA 150 (465)
Q Consensus 87 ~lP~G~E~G~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~i--p~~~----~~~~~~----------~lfd~Ia~~ 150 (465)
+||.+ .+|||||+|.|++|+.+++.+|+ ++...+..+++ |..- ...+++ .+++-+..+
T Consensus 3 ~~~~~---~~~LGiD~GT~s~Ka~l~d~~g~---vv~~a~~~~~~~~~~~~~~~gve~dp~~~~~~~~~~~~w~~al~~~ 76 (556)
T PLN02669 3 SLPED---SLFLGFDSSTQSLKATVLDSNLR---IVASEIVHFDSDLPHYGTKDGVYRDPKVNGRIVSPTLMWVEALDLL 76 (556)
T ss_pred CCCCC---CeEEEEecccCCeEEEEEcCCCC---EEEEEEecCCcccCcCCCCCceEeCCcccCccCCCHHHHHHHHHHH
Confidence 46654 37999999999999999998885 66655444431 2111 011233 455888888
Q ss_pred HHHHHHhhCCCCCCCCCCcceeeee
Q 012386 151 LAKFVATEGEGFHVSPGRQRELGFT 175 (465)
Q Consensus 151 I~~fl~~~~~~~~~~~~~~~~lG~t 175 (465)
+++++ +.+.+. +++..||++
T Consensus 77 l~~l~-~~~~~~----~~I~aIs~s 96 (556)
T PLN02669 77 LQKLA-KEKFPF----HKVVAISGS 96 (556)
T ss_pred HHHHH-HcCCCh----hhEEEEEec
Confidence 88876 333221 345555555
No 59
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=92.33 E-value=12 Score=40.98 Aligned_cols=55 Identities=24% Similarity=0.338 Sum_probs=35.7
Q ss_pred CcHHHHHHHHHHHcCCCeeEEEEEechHHHhhcccccC---CceEEEEEEcccc-ceeEEc
Q 012386 205 EDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHN---KDAIAAVILGTGT-NAAYVE 261 (465)
Q Consensus 205 ~dv~~~L~~al~~~gl~v~v~alvNDtvatlla~~y~~---~~~~iglIlGTG~-Na~yie 261 (465)
..=.+.+.+|.+.-|+++ +.|+|+.+|++++-.+.. ++.++-+=+|-|+ ..+++.
T Consensus 148 ~~qr~~~~~Aa~~agl~~--~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~Gggt~dvs~~~ 206 (602)
T PF00012_consen 148 DEQRQALRDAAELAGLNV--LRLINEPTAAALAYGLERSDKGKTVLVVDFGGGTFDVSVVE 206 (602)
T ss_dssp HHHHHHHHHHHHHTT-EE--EEEEEHHHHHHHHTTTTSSSSEEEEEEEEEESSEEEEEEEE
T ss_pred hhhhhccccccccccccc--ceeecccccccccccccccccccceeccccccceEeeeehh
Confidence 445677888888788865 789999999988744332 2344444567665 445543
No 60
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=91.67 E-value=1.7 Score=40.17 Aligned_cols=76 Identities=22% Similarity=0.182 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEecceeccchhHHHHHHHHHHHHhccCCCccEEEEEeCC
Q 012386 364 ELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSND 443 (465)
Q Consensus 364 ~ia~~V~~RaA~l~aagiaaii~~~~~~~~~~~~~~~~~V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l~~a~D 443 (465)
.++++|++=-|.-....+-.+-+..+.. .+ .|.+.||.. +.+.+.+.+-+.+. ..|.+...++
T Consensus 122 ~~~rAv~Egia~~~~~~~~~l~~~~~~~------~~--~i~~~GG~~-~n~~~~q~~Advl~--------~~V~~~~~~e 184 (198)
T PF02782_consen 122 DLARAVLEGIAFSLRQILEELEELTGIP------IR--RIRVSGGGA-KNPLWMQILADVLG--------RPVVRPEVEE 184 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSC------ES--EEEEESGGG-GSHHHHHHHHHHHT--------SEEEEESSST
T ss_pred HHHHHHHHhHHHHHHHhhhhcccccccc------ce--eeEeccccc-cChHHHHHHHHHhC--------CceEeCCCCc
Confidence 3444555544444444444443332431 13 466788877 78888888777652 3566666699
Q ss_pred hhHHHHHHHHHHh
Q 012386 444 GSGIGAALLAASH 456 (465)
Q Consensus 444 gs~iGAAl~Aa~~ 456 (465)
++.+|||++|+++
T Consensus 185 ~~a~GaA~~A~~a 197 (198)
T PF02782_consen 185 ASALGAALLAAVA 197 (198)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhh
Confidence 9999999999875
No 61
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=91.08 E-value=0.44 Score=50.36 Aligned_cols=74 Identities=20% Similarity=0.285 Sum_probs=56.2
Q ss_pred ceeEEEEEeCCceEEEEEEEecCCcceeEEEEe----eeeecCCCcccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCc
Q 012386 94 KGLFYALDLGGTNFRVLRVQLGGREGRVVKQEF----EEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQ 169 (465)
Q Consensus 94 ~G~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~----~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~ 169 (465)
..++++||-|-|+.|+.+++.+|+ ++.... +.||-|.-+ ..++.+++.-...++.+.+.+.+... .++
T Consensus 4 ~~yIlAiDqGTTssRaivfd~~g~---iva~~q~e~~Q~yP~~GWV-EhDp~eIw~~~~~~l~~a~~~~~i~~----~~i 75 (499)
T COG0554 4 DKYILAIDQGTTSSRAIVFDEDGN---IVAIAQREFTQIYPQPGWV-EHDPLEIWASVRSVLKEALAKAGIKP----GEI 75 (499)
T ss_pred ccEEEEEecCCcceeEEEECCCCC---chhhhhhhhhhhCCCCCcc-ccCHHHHHHHHHHHHHHHHHHcCCCc----cce
Confidence 468899999999999999998885 333221 234555443 46799999999999999998876543 567
Q ss_pred ceeeee
Q 012386 170 RELGFT 175 (465)
Q Consensus 170 ~~lG~t 175 (465)
..||+|
T Consensus 76 aaIGIT 81 (499)
T COG0554 76 AAIGIT 81 (499)
T ss_pred EEEEee
Confidence 888887
No 62
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=90.68 E-value=12 Score=38.55 Aligned_cols=57 Identities=19% Similarity=0.313 Sum_probs=39.0
Q ss_pred CcHHHHHHHHHHHcCCCeeEEEEEechHHHhhccccc--CCceEEEEEEcccc-ceeEEccC
Q 012386 205 EDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH--NKDAIAAVILGTGT-NAAYVERA 263 (465)
Q Consensus 205 ~dv~~~L~~al~~~gl~v~v~alvNDtvatlla~~y~--~~~~~iglIlGTG~-Na~yie~~ 263 (465)
++..+.+.++++.-|+++ ..++++..|+..+.... .+...+-+=+|.|+ +.+++.++
T Consensus 157 ~~~v~~~~~~~~~aGl~~--~~i~~~~~A~a~a~~~~~~~~~~~~vvDiG~gtt~i~i~~~g 216 (371)
T TIGR01174 157 STILRNLVKCVERCGLEV--DNIVLSGLASAIAVLTEDEKELGVCLIDIGGGTTDIAVYTGG 216 (371)
T ss_pred HHHHHHHHHHHHHcCCCe--eeEEEhhhhhhhhhcCcchhcCCEEEEEeCCCcEEEEEEECC
Confidence 456677777887778765 68899999988864332 23456667788888 55565543
No 63
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=90.27 E-value=0.5 Score=50.29 Aligned_cols=59 Identities=19% Similarity=0.065 Sum_probs=37.3
Q ss_pred EEEEeCCceEEEEEEEecCCcceeE-EEEeeeeecCCCc---ccCCcchHHHHHHHHHHHHHH
Q 012386 98 YALDLGGTNFRVLRVQLGGREGRVV-KQEFEEVSIPPHL---MTGSSHELFDYIAAALAKFVA 156 (465)
Q Consensus 98 LaiDlGGTNlRv~~V~l~g~~~~i~-~~~~~~~~ip~~~---~~~~~~~lfd~Ia~~I~~fl~ 156 (465)
||||+|.|+.|+.+++.++..+++. ...++..+...+. ...+.+++++.+.+++++...
T Consensus 1 ~aiD~Gtt~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~ 63 (454)
T TIGR02627 1 VAVDLGASSGRVMLASYENECQKLTLEEIHRFKNGLVSQNGHECWDIDALEQEIRLGLNKVDA 63 (454)
T ss_pred CcEeccCCchheEEEEEcCCCceEEEEEEEeCCCCCEeECCEEEEehHHHHHHHHHHHHHHhc
Confidence 5899999999999999985423444 2222221111111 012356788899999888865
No 64
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=90.02 E-value=2.7 Score=42.77 Aligned_cols=62 Identities=19% Similarity=0.407 Sum_probs=40.8
Q ss_pred eEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCCcccCCcchHHHHHHHHHHHHHHhhC
Q 012386 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEG 159 (465)
Q Consensus 96 ~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~ 159 (465)
.++|||+|.+++|++.++..+++.++.. ....++|.+....+.-.=.+.+++.|++.+++.+
T Consensus 4 ~~vgiDIg~~~Ik~v~~~~~~~~~~v~~--~~~~~~p~~~i~~g~i~d~~~~~~~l~~~~~~~~ 65 (348)
T TIGR01175 4 LLVGIDIGSTSVKVAQLKRSGDRYKLEH--YAVEPLPAGIFTEGHIVEYQAVAEALKELLSELG 65 (348)
T ss_pred cEEEEEeccCeEEEEEEEecCCceEEEE--EEEEECCCCcccCCCccCHHHHHHHHHHHHHHcC
Confidence 5899999999999998886554334443 2356788665432211123567788888887765
No 65
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=89.84 E-value=1.1 Score=48.14 Aligned_cols=75 Identities=19% Similarity=0.248 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEecceeccchhHHHHHHHHHHHHhccCCCccEEEEEeCChhHHH
Q 012386 369 VATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIG 448 (465)
Q Consensus 369 V~~RaA~l~aagiaaii~~~~~~~~~~~~~~~~~V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l~~a~Dgs~iG 448 (465)
+..+....+|-|.-.|+..+...+. .-+ ++-+-||. .++|.+.+.+-+.. .+.+.+..+++...+|
T Consensus 406 lY~a~l~a~A~GtR~Iie~~~~~g~---~Id--~l~~sGG~-~KN~llmql~aDvt--------g~~v~i~~s~~a~llG 471 (544)
T COG1069 406 LYRALLEATAFGTRAIIETFEDQGI---AID--TLFASGGI-RKNPLLMQLYADVT--------GRPVVIPASDQAVLLG 471 (544)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHcCC---eee--EEEecCCc-ccCHHHHHHHHHhc--------CCeEEeecccchhhhH
Confidence 4455666788888999998876432 113 57778888 89999888877754 3578889999999999
Q ss_pred HHHHHHHhc
Q 012386 449 AALLAASHS 457 (465)
Q Consensus 449 AAl~Aa~~~ 457 (465)
+|+.+|+++
T Consensus 472 sAm~~avAa 480 (544)
T COG1069 472 AAMFAAVAA 480 (544)
T ss_pred HHHHHHHHh
Confidence 999999877
No 66
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=87.93 E-value=13 Score=41.65 Aligned_cols=83 Identities=20% Similarity=0.181 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEecceeccchhHHHHHHHHHHHHhccCCCccEEE
Q 012386 359 RKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVI 438 (465)
Q Consensus 359 ~~~~~~ia~~V~~RaA~l~aagiaaii~~~~~~~~~~~~~~~~~V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l 438 (465)
++.+.++|.....|+..=+=-+|.---..++. .+ .+|-+|||. .-|...+.+++++.+- +--+.
T Consensus 333 Re~fEelc~Dl~~r~~~Pi~dAl~~a~l~lde-------In-~ViL~Gg~T--RVP~VQe~l~k~v~~~------ei~kn 396 (902)
T KOG0104|consen 333 REEFEELCADLEERIVEPINDALKKAQLSLDE-------IN-QVILFGGAT--RVPKVQETLIKAVGKE------ELGKN 396 (902)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHhcCCChhh-------hh-eeEEecCcc--cCchHHHHHHHHHhHH------HHhcc
Confidence 66778899999999876554444311111111 12 256677765 5676666666665432 11123
Q ss_pred EEeCChhHHHHHHHHHHhc
Q 012386 439 EHSNDGSGIGAALLAASHS 457 (465)
Q Consensus 439 ~~a~Dgs~iGAAl~Aa~~~ 457 (465)
.-++++...||++-||--+
T Consensus 397 lNaDEA~vmGav~~aA~LS 415 (902)
T KOG0104|consen 397 LNADEAAVMGAVYQAAHLS 415 (902)
T ss_pred cChhHHHHHHHHHHHHhhc
Confidence 4578999999999987654
No 67
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=86.62 E-value=8.5 Score=41.56 Aligned_cols=49 Identities=24% Similarity=0.312 Sum_probs=36.5
Q ss_pred EEEEecceeccchhHHHHHHHHHHHHhccCCCccEEEEEeCChhHHHHHHHHHHhccc
Q 012386 402 VIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHSQY 459 (465)
Q Consensus 402 ~V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l~~a~Dgs~iGAAl~Aa~~~~~ 459 (465)
++.++||+.+ .|.|.+...+.+ + ..|.+-.--|..++|||+++++++..
T Consensus 417 ~L~~~GG~s~-N~ll~Q~~ADi~----g----~pv~~p~~~e~~~~GaA~l~~~a~~~ 465 (516)
T KOG2517|consen 417 TLRVCGGLSK-NPLLMQLQADIL----G----LPVVRPQDVEAVALGAAMLAGAASGK 465 (516)
T ss_pred eeeecccccc-CHHHHHHHHHHh----C----CccccccchhHHHHHHHHHHHhhcCC
Confidence 5889999975 788887776644 3 24555555677999999999998854
No 68
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=85.85 E-value=14 Score=36.41 Aligned_cols=136 Identities=18% Similarity=0.217 Sum_probs=73.5
Q ss_pred CCCCcceeEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCC-cccCCcchHHHHHHHHHHHHHHhhCCCCCCCCC
Q 012386 89 PTGDEKGLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPH-LMTGSSHELFDYIAAALAKFVATEGEGFHVSPG 167 (465)
Q Consensus 89 P~G~E~G~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~-~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~ 167 (465)
|.-+..+.+++||+|-|++|+...+..++ ++... ..|.+ ++.+.-.+ ++.....|+.+++....... .
T Consensus 18 ~~~~~~~~~~~iDiGSssi~~vv~~~~~~---~~~~~----~~~~~~vr~G~i~d-i~~a~~~i~~~~~~ae~~~g---~ 86 (267)
T PRK15080 18 PVATESPLKVGVDLGTANIVLAVLDEDGQ---PVAGA----LEWADVVRDGIVVD-FIGAVTIVRRLKATLEEKLG---R 86 (267)
T ss_pred CCCCCCCEEEEEEccCceEEEEEEcCCCC---EEEEE----eccccccCCCEEee-HHHHHHHHHHHHHHHHHHhC---C
Confidence 33456778999999999999888765443 33222 22332 32332222 66666777777663211000 1
Q ss_pred CcceeeeeeecccccccCCceEEeccCCccccCCCCCCcHHHHHHHHHHHcCCCeeEEEEEechHHHhhcccccCCceEE
Q 012386 168 RQRELGFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHNKDAIA 247 (465)
Q Consensus 168 ~~~~lG~tfSfPv~q~~i~~g~Li~wtKgF~~~~~~g~dv~~~L~~al~~~gl~v~v~alvNDtvatlla~~y~~~~~~i 247 (465)
+...+. .+.|..++. .+ ...+.+++++-|+++ ..++++..|+..+-.+ .+ .+
T Consensus 87 ~i~~v~--~~vp~~~~~--------------------~~-~~~~~~~~~~aGl~~--~~ii~e~~A~a~~~~~--~~-~~ 138 (267)
T PRK15080 87 ELTHAA--TAIPPGTSE--------------------GD-PRAIINVVESAGLEV--THVLDEPTAAAAVLGI--DN-GA 138 (267)
T ss_pred CcCeEE--EEeCCCCCc--------------------hh-HHHHHHHHHHcCCce--EEEechHHHHHHHhCC--CC-cE
Confidence 122222 245543321 11 223557777778875 5799999987765322 22 34
Q ss_pred EEEEcccc-ceeEEccC
Q 012386 248 AVILGTGT-NAAYVERA 263 (465)
Q Consensus 248 glIlGTG~-Na~yie~~ 263 (465)
-+=+|-|+ +.+++.++
T Consensus 139 vvDIGggtt~i~v~~~g 155 (267)
T PRK15080 139 VVDIGGGTTGISILKDG 155 (267)
T ss_pred EEEeCCCcEEEEEEECC
Confidence 45566666 55555443
No 69
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=82.14 E-value=10 Score=38.61 Aligned_cols=125 Identities=17% Similarity=0.269 Sum_probs=78.4
Q ss_pred eEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCCcccCCcchHHHHHHHHHHHHHHhhCCCCC-----CCC----
Q 012386 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFH-----VSP---- 166 (465)
Q Consensus 96 ~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~-----~~~---- 166 (465)
..+|||+|-+.+++.-..-.|+...+ ++....++|.+.+..+.-.=.+.+++.|+..+.+++.... .+.
T Consensus 11 ~~vGIdI~~~sVKvvqLs~~g~~~kL--e~y~~~~lp~~iv~dg~ivd~~av~~~Lk~ala~~gi~~k~aa~AVP~s~ai 88 (354)
T COG4972 11 AAVGIDIGSHSVKVVQLSRSGNRYKL--EKYASEPLPENIVADGKIVDYDAVASALKRALAKLGIKSKNAATAVPGSAAI 88 (354)
T ss_pred ceeeEeeccceEEEEEEcccCCceee--eeeeecccCccccccCCcccHHHHHHHHHHHHHhcCcchhhhhhhcCcccee
Confidence 47899999999999776644543322 2334678999887544434467889999999888765431 000
Q ss_pred CC-----------------cceeeeeeecccccccCCceEEeccCCccccCC----CCCCcHHHHHHHHHHHcCCCe
Q 012386 167 GR-----------------QRELGFTFSFPVRQTSIASGDLIKWTKGFSIED----TVGEDVVGELTKAMERIGLDM 222 (465)
Q Consensus 167 ~~-----------------~~~lG~tfSfPv~q~~i~~g~Li~wtKgF~~~~----~~g~dv~~~L~~al~~~gl~v 222 (465)
.+ ....+--+|||++.-+++--.|-....+=.-.. ..-+++++...++|+.-|+..
T Consensus 89 tk~i~vp~~lde~eL~~~V~~ea~~y~PyP~EEv~lDy~vlg~~~~~~e~v~Vll~AtrkE~v~~ri~a~~~AGl~~ 165 (354)
T COG4972 89 TKTIPVPDELDEKELEDQVESEASRYIPYPLEEVNLDYQVLGPSANEPEKVQVLLVATRKEVVESRIDAFELAGLEP 165 (354)
T ss_pred eEEeccCCcccHHHHHHHHHHHHhhcCCCchhhcccceEEeccccCCCccEEEEEEEeehhhhHHHHHHHHHcCCCc
Confidence 00 024567789999877665444422211100000 123789999999998889865
No 70
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=80.15 E-value=43 Score=35.31 Aligned_cols=55 Identities=22% Similarity=0.299 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHcCCCeeEEEEEechHHHhhcccccC--CceEEEEEEcccc-ceeEEccC
Q 012386 207 VVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHN--KDAIAAVILGTGT-NAAYVERA 263 (465)
Q Consensus 207 v~~~L~~al~~~gl~v~v~alvNDtvatlla~~y~~--~~~~iglIlGTG~-Na~yie~~ 263 (465)
..+.+.+++++.|+++ ..++++..|+..+.-+.+ ....+-+=+|-|+ +.+++.++
T Consensus 167 ~~~~~~~a~~~aGl~v--~~iv~ep~Aaa~a~l~~~e~~~gv~vvDiGggtTdisv~~~G 224 (420)
T PRK09472 167 MAKNIVKAVERCGLKV--DQLIFAGLASSYAVLTEDERELGVCVVDIGGGTMDIAVYTGG 224 (420)
T ss_pred HHHHHHHHHHHcCCeE--eeEEehhhHHHHHhcChhhhhcCeEEEEeCCCceEEEEEECC
Confidence 3445566777677776 688999998888754433 2345666789888 56666543
No 71
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=79.33 E-value=21 Score=39.64 Aligned_cols=55 Identities=20% Similarity=0.256 Sum_probs=35.5
Q ss_pred CcHHHHHHHHHHHcCCCeeEEEEEechHHHhhccccc--CCceEEEEEEcccc-ceeEEc
Q 012386 205 EDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH--NKDAIAAVILGTGT-NAAYVE 261 (465)
Q Consensus 205 ~dv~~~L~~al~~~gl~v~v~alvNDtvatlla~~y~--~~~~~iglIlGTG~-Na~yie 261 (465)
..=.+.+.+|.+..|+++ +.|+|+.+|++++-.+. ....++-+=+|-|| ..+.++
T Consensus 162 ~~qR~a~~~Aa~~AGl~v--~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSv~~ 219 (616)
T PRK05183 162 DAQRQATKDAARLAGLNV--LRLLNEPTAAAIAYGLDSGQEGVIAVYDLGGGTFDISILR 219 (616)
T ss_pred HHHHHHHHHHHHHcCCCe--EEEecchHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEE
Confidence 335567777777778875 79999999999875443 23334444566666 444443
No 72
>PRK13410 molecular chaperone DnaK; Provisional
Probab=78.59 E-value=3.8 Score=46.02 Aligned_cols=82 Identities=17% Similarity=0.227 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEecceeccchhHHHHHHHHHHHHhccCCCccEEE
Q 012386 359 RKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVI 438 (465)
Q Consensus 359 ~~~~~~ia~~V~~RaA~l~aagiaaii~~~~~~~~~~~~~~~~~V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l 438 (465)
+..+.++|.-+++|....+-..|..- .+.+. .-. -++.+|||. ..|..++.+++.+ +... ...
T Consensus 297 R~~FE~l~~~l~~r~~~~i~~~L~~a--g~~~~-----dId-~VvLVGGss--RiP~V~~~l~~~f----g~~~--~~~- 359 (668)
T PRK13410 297 RKQFESLCGDLLDRLLRPVKRALKDA--GLSPE-----DID-EVVLVGGST--RMPMVQQLVRTLI----PREP--NQN- 359 (668)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc--CCChh-----hCc-EEEEECCcc--ccHHHHHHHHHHc----CCCc--ccC-
Confidence 56677888888888776665544311 12221 112 245566654 4777777666643 3221 111
Q ss_pred EEeCChhHHHHHHHHHHhc
Q 012386 439 EHSNDGSGIGAALLAASHS 457 (465)
Q Consensus 439 ~~a~Dgs~iGAAl~Aa~~~ 457 (465)
.-.+.+-.+|||+.|+.-+
T Consensus 360 ~npdeaVA~GAAi~aa~ls 378 (668)
T PRK13410 360 VNPDEVVAVGAAIQAGILA 378 (668)
T ss_pred CCCchHHHHhHHHHHHhhc
Confidence 2236688899999998755
No 73
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=77.98 E-value=7.8 Score=43.43 Aligned_cols=82 Identities=12% Similarity=0.114 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEecceeccchhHHHHHHHHHHHHhccCCCccEEE
Q 012386 359 RKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVI 438 (465)
Q Consensus 359 ~~~~~~ia~~V~~RaA~l~aagiaaii~~~~~~~~~~~~~~~~~V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l 438 (465)
+..+.++|..+++|.-..+--.|..- .+.+. .-.. +|-+|||. ..|..++.+++.+ +.. .+.-
T Consensus 322 R~efe~l~~~l~~r~~~~v~~~L~~a--~~~~~-----dId~-VvLVGGss--riP~V~~~l~~~f----g~~---~~~~ 384 (657)
T PTZ00186 322 RSKFEGITQRLIERSIAPCKQCMKDA--GVELK-----EIND-VVLVGGMT--RMPKVVEEVKKFF----QKD---PFRG 384 (657)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc--CCChh-----hCCE-EEEECCcc--cChHHHHHHHHHh----CCC---cccc
Confidence 56777888888888877765544321 12221 1121 45566665 5777777777654 321 1222
Q ss_pred EEeCChhHHHHHHHHHHhc
Q 012386 439 EHSNDGSGIGAALLAASHS 457 (465)
Q Consensus 439 ~~a~Dgs~iGAAl~Aa~~~ 457 (465)
...+.+-.+|||+.|+.-+
T Consensus 385 ~nPdeaVA~GAAi~a~~l~ 403 (657)
T PTZ00186 385 VNPDEAVALGAATLGGVLR 403 (657)
T ss_pred CCCchHHHHhHHHHHHHhc
Confidence 2336778899999998755
No 74
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=77.82 E-value=20 Score=33.10 Aligned_cols=106 Identities=17% Similarity=0.174 Sum_probs=54.5
Q ss_pred EEEEEeCCceEEEEEEEecCC-cceeEEEEeeeeecCCC-cccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCcceeee
Q 012386 97 FYALDLGGTNFRVLRVQLGGR-EGRVVKQEFEEVSIPPH-LMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGF 174 (465)
Q Consensus 97 ~LaiDlGGTNlRv~~V~l~g~-~~~i~~~~~~~~~ip~~-~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG~ 174 (465)
|.+||+|-|++++...+..++ ...++... ..|.+ +.+|.-.+ .+-+++.|++.+++...... -+...+-+
T Consensus 1 ~~~lDIGs~~ik~vv~~~~~~~~~~i~g~~----~~~s~gi~~G~I~d-~~~~~~~I~~ai~~ae~~~~---~~i~~V~v 72 (187)
T smart00842 1 IVGLDIGTSKIKALVAEVDEDGEINVIGVG----EVPSRGIRKGVIVD-IEAAARAIREAVEEAERMAG---VKIDSVYV 72 (187)
T ss_pred CEEEEeccceEEEEEEEEcCCCCEEEEEEE----EecCCCccCcEEEC-HHHHHHHHHHHHHHHHHHhC---CcccEEEE
Confidence 579999999999999987643 23344322 33544 33343333 45556666666664411000 12334555
Q ss_pred eeecccccccCCceEEeccCCccccCCCCCCcHHHHHHHHH
Q 012386 175 TFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAM 215 (465)
Q Consensus 175 tfSfPv~q~~i~~g~Li~wtKgF~~~~~~g~dv~~~L~~al 215 (465)
++|+.--......+.+ ..+. ..+...|+...++.+.
T Consensus 73 ~i~g~~v~~~~~~~~i-~i~~----~~i~~~di~~~~~~a~ 108 (187)
T smart00842 73 GISGRHLKSVNVSGVV-AIPD----KEITQEDIDRVLEAAK 108 (187)
T ss_pred EEcCCceEEEeeEEEE-ECCC----CEECHHHHHHHHHHhh
Confidence 5555533222222222 1110 1244577888876665
No 75
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=77.54 E-value=31 Score=38.70 Aligned_cols=54 Identities=20% Similarity=0.255 Sum_probs=36.1
Q ss_pred CcHHHHHHHHHHHcCCCeeEEEEEechHHHhhccccc--CCceEEEEEEcccc-ceeEE
Q 012386 205 EDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH--NKDAIAAVILGTGT-NAAYV 260 (465)
Q Consensus 205 ~dv~~~L~~al~~~gl~v~v~alvNDtvatlla~~y~--~~~~~iglIlGTG~-Na~yi 260 (465)
..=.+.+.+|.+..|+++ +.|+|+.+|++++.... .+..++-+=+|-|| ..+.+
T Consensus 187 ~~qR~a~~~Aa~~AGl~v--~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~ 243 (663)
T PTZ00400 187 DSQRQATKDAGKIAGLDV--LRIINEPTAAALAFGMDKNDGKTIAVYDLGGGTFDISIL 243 (663)
T ss_pred HHHHHHHHHHHHHcCCce--EEEeCchHHHHHHhccccCCCcEEEEEeCCCCeEEEEEE
Confidence 334566777776678875 79999999999975543 33445555567776 44444
No 76
>CHL00094 dnaK heat shock protein 70
Probab=75.44 E-value=5.1 Score=44.56 Aligned_cols=82 Identities=18% Similarity=0.288 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEecceeccchhHHHHHHHHHHHHhccCCCccEEE
Q 012386 359 RKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVI 438 (465)
Q Consensus 359 ~~~~~~ia~~V~~RaA~l~aagiaaii~~~~~~~~~~~~~~~~~V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l 438 (465)
+..+.++|.-+++|....+-..|... .+.+. .-. -++.+|||- ..|.+++.+++.+ +... ...+
T Consensus 297 R~~fe~l~~~l~~~~~~~i~~~L~~a--~~~~~-----~i~-~ViLvGGss--riP~v~~~l~~~f----g~~~--~~~~ 360 (621)
T CHL00094 297 RAKFEELCSDLINRCRIPVENALKDA--KLDKS-----DID-EVVLVGGST--RIPAIQELVKKLL----GKKP--NQSV 360 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc--CCChh-----hCc-EEEEECCcc--CChHHHHHHHHHh----CCCc--CcCC
Confidence 56677778777777665555444321 12221 112 245566653 5788877777765 3211 1111
Q ss_pred EEeCChhHHHHHHHHHHhc
Q 012386 439 EHSNDGSGIGAALLAASHS 457 (465)
Q Consensus 439 ~~a~Dgs~iGAAl~Aa~~~ 457 (465)
..+++-..|||+.|+..+
T Consensus 361 -~pdeava~GAA~~aa~ls 378 (621)
T CHL00094 361 -NPDEVVAIGAAVQAGVLA 378 (621)
T ss_pred -CchhHHHhhhHHHHHHhc
Confidence 235678899999998765
No 77
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=74.68 E-value=29 Score=38.27 Aligned_cols=54 Identities=17% Similarity=0.246 Sum_probs=35.1
Q ss_pred CcHHHHHHHHHHHcCCCeeEEEEEechHHHhhcccccC---CceEEEEEEcccc-ceeEE
Q 012386 205 EDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHN---KDAIAAVILGTGT-NAAYV 260 (465)
Q Consensus 205 ~dv~~~L~~al~~~gl~v~v~alvNDtvatlla~~y~~---~~~~iglIlGTG~-Na~yi 260 (465)
..=.+.+.+|.+..|+++ +.++|+.+|++++-.+.. +..++-+=+|-|| ..+.+
T Consensus 143 ~~qR~a~~~Aa~~AGl~v--~~li~EptAAAl~y~~~~~~~~~~vlV~D~Gggt~dvsv~ 200 (595)
T TIGR02350 143 DAQRQATKDAGKIAGLEV--LRIINEPTAAALAYGLDKSKKDEKILVFDLGGGTFDVSIL 200 (595)
T ss_pred HHHHHHHHHHHHHcCCce--EEEecchHHHHHHHhhcccCCCcEEEEEECCCCeEEEEEE
Confidence 445667777776678875 799999999999754432 3444444466666 44444
No 78
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=73.29 E-value=17 Score=37.03 Aligned_cols=60 Identities=15% Similarity=0.339 Sum_probs=36.6
Q ss_pred EEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCCcccCCcchHHHHHHHHHHHHHHhhCC
Q 012386 99 ALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGE 160 (465)
Q Consensus 99 aiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~ 160 (465)
|||+|-.++|+..++-.+++..+. ..-..++|......+.-.=.+.+++.|++.+++++.
T Consensus 1 GiDiG~~siK~v~l~~~~~~~~l~--~~~~~~~p~~~i~~g~i~d~~~l~~~L~~~~~~~~~ 60 (340)
T PF11104_consen 1 GIDIGSSSIKAVELSKKGNRFQLE--AFASIPLPPGAISDGEIVDPEALAEALKELLKENKI 60 (340)
T ss_dssp EEEE-SSEEEEEEEETTTT--EEE--EEEEEE--TTSEETTEES-HHHHHHHHHHHHHHHT-
T ss_pred CeecCCCeEEEEEEEEcCCccEEE--EEEEEECCCCCccCCCcCCHHHHHHHHHHHHHHcCC
Confidence 799999999998888765543333 334678898764333222356788888888877654
No 79
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=72.50 E-value=17 Score=39.37 Aligned_cols=62 Identities=18% Similarity=0.252 Sum_probs=28.7
Q ss_pred eEEEEEeCCceEEEEEEEec-CCcceeEEEEeee---eecCCCcccCCcchHHHHHHHHHHHHHHhhCC
Q 012386 96 LFYALDLGGTNFRVLRVQLG-GREGRVVKQEFEE---VSIPPHLMTGSSHELFDYIAAALAKFVATEGE 160 (465)
Q Consensus 96 ~~LaiDlGGTNlRv~~V~l~-g~~~~i~~~~~~~---~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~ 160 (465)
++||||+|--.-|+++++.. |. ++.+..+. +.++......++++.++-++..|.+.+++.+.
T Consensus 4 ~~iGvDvGTgSaRA~v~D~~~G~---~la~a~~p~~~~~~~~~~~~q~s~d~~~av~~aVr~~v~~agv 69 (544)
T COG1069 4 YVIGVDVGTGSARAGVFDCQTGT---LLARAVRPYPMWQPGSNLAEQHSRDYWEAVCAAVRDVVAKAGV 69 (544)
T ss_pred EEEEEeecCCceeEEEEEcCCCc---chhhcccceeccccCccccccCHHHHHHHHHHHHHHHHHHcCC
Confidence 45566666556666666554 32 22222111 11222222234555556666666666555543
No 80
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=72.26 E-value=43 Score=37.30 Aligned_cols=54 Identities=19% Similarity=0.244 Sum_probs=34.4
Q ss_pred cHHHHHHHHHHHcCCCeeEEEEEechHHHhhcccccC--CceEEEEEEcccc-ceeEEc
Q 012386 206 DVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHN--KDAIAAVILGTGT-NAAYVE 261 (465)
Q Consensus 206 dv~~~L~~al~~~gl~v~v~alvNDtvatlla~~y~~--~~~~iglIlGTG~-Na~yie 261 (465)
.=.+.+.+|.+..|+++ +.|+|+.+|++++-.+.. ...++-+=+|-|| ..+.++
T Consensus 147 ~qR~a~~~Aa~~AGl~v--~~li~EptAAAl~y~~~~~~~~~vlV~D~GggT~dvsv~~ 203 (627)
T PRK00290 147 AQRQATKDAGKIAGLEV--LRIINEPTAAALAYGLDKKGDEKILVYDLGGGTFDVSILE 203 (627)
T ss_pred HHHHHHHHHHHHcCCce--EEEecchHHHHHHhhhccCCCCEEEEEECCCCeEEEEEEE
Confidence 34566667766668875 799999999998754432 3444444566665 444443
No 81
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=72.13 E-value=55 Score=31.67 Aligned_cols=50 Identities=16% Similarity=0.278 Sum_probs=31.8
Q ss_pred HHHHHHHHHcCCCeeEEEEEechHHHhhcccccCCceEEEEEEcccc-ceeEEccC
Q 012386 209 GELTKAMERIGLDMRVAALVNDTIGTLAGGRYHNKDAIAAVILGTGT-NAAYVERA 263 (465)
Q Consensus 209 ~~L~~al~~~gl~v~v~alvNDtvatlla~~y~~~~~~iglIlGTG~-Na~yie~~ 263 (465)
+.+.++++.-|+++ +.++|+..|+.++-... ..+-+=+|.|+ +.+++.++
T Consensus 78 ~a~~~a~~~aGl~~--~~li~ep~Aaa~~~~~~---~~~vvDiGggtt~i~i~~~G 128 (239)
T TIGR02529 78 KVIVNVIESAGIEV--LHVLDEPTAAAAVLQIK---NGAVVDVGGGTTGISILKKG 128 (239)
T ss_pred HHHHHHHHHcCCce--EEEeehHHHHHHHhcCC---CcEEEEeCCCcEEEEEEECC
Confidence 45567777668875 79999999988763222 23555667666 44455443
No 82
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=72.06 E-value=1.4e+02 Score=32.21 Aligned_cols=77 Identities=21% Similarity=0.240 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEecceeccchhHHHHHHHHHHHHhccCCCccEEEEEeCC
Q 012386 364 ELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSND 443 (465)
Q Consensus 364 ~ia~~V~~RaA~l~aagiaaii~~~~~~~~~~~~~~~~~V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l~~a~D 443 (465)
.++++|.+-.|..++.++-.+.+..+... + .|.+.||-.+ .+.+.+.+.+.+ + ..|......+
T Consensus 374 ~l~ravlEgva~~l~~~~~~l~~~~g~~~------~--~i~~~GGgar-s~~w~Qi~Ad~~----g----~~v~~~~~~e 436 (502)
T COG1070 374 HLARAVLEGVAFALADGLEALEELGGKPP------S--RVRVVGGGAR-SPLWLQILADAL----G----LPVVVPEVEE 436 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCc------c--EEEEECCccc-CHHHHHHHHHHc----C----CeeEecCccc
Confidence 56778888888888888887766656521 2 3555666554 577777777654 2 3555555577
Q ss_pred hhHHHHHHHHHHhc
Q 012386 444 GSGIGAALLAASHS 457 (465)
Q Consensus 444 gs~iGAAl~Aa~~~ 457 (465)
++..|+|++++.+.
T Consensus 437 ~~a~g~A~~~~~~~ 450 (502)
T COG1070 437 AGALGGAALAAAAL 450 (502)
T ss_pred chHHHHHHHHHHHh
Confidence 88777777766655
No 83
>PLN03184 chloroplast Hsp70; Provisional
Probab=70.13 E-value=17 Score=40.84 Aligned_cols=82 Identities=17% Similarity=0.248 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEecceeccchhHHHHHHHHHHHHhccCCCccEEE
Q 012386 359 RKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVI 438 (465)
Q Consensus 359 ~~~~~~ia~~V~~RaA~l~aagiaaii~~~~~~~~~~~~~~~~~V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l 438 (465)
+..+.++|.-+++|....+-..| +.-+... ..-. -++.++||. ..|..++.+++.+ +.. ....
T Consensus 334 R~~fe~l~~~l~~r~~~~i~~~L----~~a~~~~---~dId-~ViLvGGss--riP~V~~~i~~~f----g~~--~~~~- 396 (673)
T PLN03184 334 RAKFEELCSDLLDRCKTPVENAL----RDAKLSF---KDID-EVILVGGST--RIPAVQELVKKLT----GKD--PNVT- 396 (673)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHcCCCh---hHcc-EEEEECCcc--ccHHHHHHHHHHh----CCC--cccc-
Confidence 56677888888888766555443 2222110 0112 245566654 4777777776654 321 1112
Q ss_pred EEeCChhHHHHHHHHHHhc
Q 012386 439 EHSNDGSGIGAALLAASHS 457 (465)
Q Consensus 439 ~~a~Dgs~iGAAl~Aa~~~ 457 (465)
...+.+-.+|||+.|+.-+
T Consensus 397 ~npdeaVA~GAAi~aa~ls 415 (673)
T PLN03184 397 VNPDEVVALGAAVQAGVLA 415 (673)
T ss_pred cCcchHHHHHHHHHHHHhc
Confidence 2336778899999998755
No 84
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=70.01 E-value=23 Score=38.17 Aligned_cols=77 Identities=14% Similarity=0.199 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEecceeccchhHHHHHHHHHHHHhccCCCccEEEEEeCC
Q 012386 364 ELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSND 443 (465)
Q Consensus 364 ~ia~~V~~RaA~l~aagiaaii~~~~~~~~~~~~~~~~~V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l~~a~D 443 (465)
.++++|++=-|..+...+-.+.+..+.. .+ .|.+.||.. +.+.+++.+.+.+ + ..|.+....+
T Consensus 374 ~l~rAvlEgia~~~~~~~~~~~~~~g~~------~~--~i~~~GGga-~s~~w~Qi~Adv~----g----~pv~~~~~~e 436 (505)
T TIGR01314 374 HMIRAALEGVIYNLYTVALALVEVMGDP------LN--MIQATGGFA-SSEVWRQMMSDIF----E----QEIVVPESYE 436 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCC------Cc--EEEEecCcc-cCHHHHHHHHHHc----C----CeeEecCCCC
Confidence 4556666666666666666665544431 02 355566654 5688887777754 2 3566555678
Q ss_pred hhHHHHHHHHHHhc
Q 012386 444 GSGIGAALLAASHS 457 (465)
Q Consensus 444 gs~iGAAl~Aa~~~ 457 (465)
++.+|||++|+.+.
T Consensus 437 ~~a~GaA~la~~~~ 450 (505)
T TIGR01314 437 SSCLGACILGLKAL 450 (505)
T ss_pred cchHHHHHHHHHhc
Confidence 99999999998766
No 85
>PRK10854 exopolyphosphatase; Provisional
Probab=68.32 E-value=31 Score=37.50 Aligned_cols=62 Identities=19% Similarity=0.277 Sum_probs=44.4
Q ss_pred eEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCCcccCC--cchHHHHHHHHHHHHHHh
Q 012386 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGS--SHELFDYIAAALAKFVAT 157 (465)
Q Consensus 96 ~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~--~~~lfd~Ia~~I~~fl~~ 157 (465)
.|-+||+|-.++|..+++..++..+++....+...+.+.+...+ .++-.+...+++..|...
T Consensus 12 ~~A~IDIGSNSirL~I~e~~~~~~~~i~~~k~~vrLg~g~~~~g~Ls~e~~~r~~~~L~~F~~~ 75 (513)
T PRK10854 12 EFAAVDLGSNSFHMVIARVVDGAMQIIGRLKQRVHLADGLDSDNMLSEEAMERGLNCLSLFAER 75 (513)
T ss_pred EEEEEEeccchheEEEEEecCCcEEEeeeeeEEEECCCCcCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 57899999999999999986544455555444556665543211 357888999999999764
No 86
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=66.42 E-value=25 Score=38.99 Aligned_cols=82 Identities=15% Similarity=0.177 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEecceeccchhHHHHHHHHHHHHhccCCCccEEE
Q 012386 359 RKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVI 438 (465)
Q Consensus 359 ~~~~~~ia~~V~~RaA~l~aagiaaii~~~~~~~~~~~~~~~~~V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l 438 (465)
+..+.++|+-+++|.-..+--.|... .+.+. .-. .++-+|||- ..|..++.+++.+ +... ...
T Consensus 281 r~efe~l~~~ll~~i~~~i~~~L~~a--~~~~~-----~id-~ViLvGGss--riP~V~~~l~~~f----~~~~--~~~- 343 (599)
T TIGR01991 281 RDEFEALIQPLVQKTLSICRRALRDA--GLSVE-----EIK-GVVLVGGST--RMPLVRRAVAELF----GQEP--LTD- 343 (599)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc--CCChh-----hCC-EEEEECCcC--CChHHHHHHHHHh----CCCC--CCC-
Confidence 56677888888888776665443311 11221 112 235455554 4777777777654 3211 111
Q ss_pred EEeCChhHHHHHHHHHHhc
Q 012386 439 EHSNDGSGIGAALLAASHS 457 (465)
Q Consensus 439 ~~a~Dgs~iGAAl~Aa~~~ 457 (465)
...+.+-..|||+.|+.-+
T Consensus 344 ~npdeaVA~GAai~a~~l~ 362 (599)
T TIGR01991 344 IDPDQVVALGAAIQADLLA 362 (599)
T ss_pred CCCcHHHHHHHHHHHHHhc
Confidence 2336778899999998755
No 87
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=66.37 E-value=30 Score=37.40 Aligned_cols=62 Identities=23% Similarity=0.283 Sum_probs=43.2
Q ss_pred eEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCCccc-CC-cchHHHHHHHHHHHHHHh
Q 012386 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMT-GS-SHELFDYIAAALAKFVAT 157 (465)
Q Consensus 96 ~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~-~~-~~~lfd~Ia~~I~~fl~~ 157 (465)
.|-+||+|-.++|..+++..++..+++....+...+...+.. +. .++-.+...++++.|.+.
T Consensus 7 ~~A~IDIGSNSirL~I~~~~~~~~~~l~~~k~~vrLg~g~~~~g~Ls~e~i~r~~~~L~~F~~~ 70 (496)
T PRK11031 7 LYAAIDLGSNSFHMLVVREVAGSIQTLARIKRKVRLAAGLDSDNALSNEAMERGWQCLRLFAER 70 (496)
T ss_pred EEEEEEccccceeEEEEEecCCceEEeecceeEEEccCCcCcCCCcCHHHHHHHHHHHHHHHHH
Confidence 577999999999999999855433455444445566554422 21 357888899999999764
No 88
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=65.85 E-value=1.1e+02 Score=31.12 Aligned_cols=51 Identities=20% Similarity=0.315 Sum_probs=33.1
Q ss_pred HHHHHHHHHHcCCCeeEEEEEechHHHhhccccc--CCceEEEEEEcccc-ceeEE
Q 012386 208 VGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH--NKDAIAAVILGTGT-NAAYV 260 (465)
Q Consensus 208 ~~~L~~al~~~gl~v~v~alvNDtvatlla~~y~--~~~~~iglIlGTG~-Na~yi 260 (465)
.+.+.++++..|+++ +.++|+.++++++.... .+...+-+=+|-|+ +.+.+
T Consensus 114 R~~l~~a~~~ag~~~--~~li~ep~Aaa~~~g~~~~~~~~~lvvDiG~gtt~v~vi 167 (335)
T PRK13929 114 RRAISDAVKNCGAKN--VHLIEEPVAAAIGADLPVDEPVANVVVDIGGGTTEVAII 167 (335)
T ss_pred HHHHHHHHHHcCCCe--eEeecCHHHHHHhcCCCcCCCceEEEEEeCCCeEEEEEE
Confidence 345566777667765 79999999999985443 23344444567776 44444
No 89
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=65.74 E-value=21 Score=33.03 Aligned_cols=49 Identities=20% Similarity=0.300 Sum_probs=33.5
Q ss_pred EEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCCcccCCcchHHHHHHHHHHHHHHhh
Q 012386 98 YALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATE 158 (465)
Q Consensus 98 LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~ 158 (465)
+|||.||||-=+.+++.+++ ++. ..+.|+. .+++..=|.+.+...+...
T Consensus 2 igIDvGGT~TD~v~~d~~~~---~~~----~~K~~Tt-----~~d~~~gi~~al~~l~~~~ 50 (176)
T PF05378_consen 2 IGIDVGGTFTDAVLLDEDTG---VVA----TAKVPTT-----PDDPAEGILEALDALLEES 50 (176)
T ss_pred eeEecCCCcEEEEEEeCCCC---EEE----EEEeCCC-----CcCHHHHHHHHHHhhhccc
Confidence 79999999999999987642 442 2345543 4556666777777776554
No 90
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=64.68 E-value=91 Score=34.60 Aligned_cols=52 Identities=19% Similarity=0.274 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHcCCCeeEEEEEechHHHhhccccc--CCceEEEEEEcccc-ceeEE
Q 012386 207 VVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH--NKDAIAAVILGTGT-NAAYV 260 (465)
Q Consensus 207 v~~~L~~al~~~gl~v~v~alvNDtvatlla~~y~--~~~~~iglIlGTG~-Na~yi 260 (465)
=.+.+.+|.+.-|+++ +.++|+.+|++++-... .....+-+=+|-|| ..+.+
T Consensus 156 qR~a~~~Aa~~AGl~v--~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSi~ 210 (595)
T PRK01433 156 ARGEVMLAAKIAGFEV--LRLIAEPTAAAYAYGLNKNQKGCYLVYDLGGGTFDVSIL 210 (595)
T ss_pred HHHHHHHHHHHcCCCE--EEEecCcHHHHHHHhcccCCCCEEEEEECCCCcEEEEEE
Confidence 3555666766668875 79999999999874432 23344444567776 44444
No 91
>PRK13411 molecular chaperone DnaK; Provisional
Probab=64.26 E-value=18 Score=40.62 Aligned_cols=82 Identities=16% Similarity=0.178 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEecceeccchhHHHHHHHHHHHHhccCCCccEEE
Q 012386 359 RKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVI 438 (465)
Q Consensus 359 ~~~~~~ia~~V~~RaA~l~aagiaaii~~~~~~~~~~~~~~~~~V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l 438 (465)
+..+.++|.-+++|....+--.|..- .+.+. .-. .++-+|||- ..|..++.+++.+ +.. .+..
T Consensus 296 R~~fe~l~~~l~~~~~~~i~~~L~~a--~~~~~-----~id-~ViLvGGss--riP~v~~~l~~~f----~~~---~~~~ 358 (653)
T PRK13411 296 RAKFEELTKDLVEATIEPMQQALKDA--GLKPE-----DID-RVILVGGST--RIPAVQEAIQKFF----GGK---QPDR 358 (653)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc--CCCHH-----HCc-EEEEECCCC--CcchHHHHHHHHc----CCc---CcCC
Confidence 56677888888888777665444311 11211 012 235455554 4777776666654 211 1111
Q ss_pred -EEeCChhHHHHHHHHHHhc
Q 012386 439 -EHSNDGSGIGAALLAASHS 457 (465)
Q Consensus 439 -~~a~Dgs~iGAAl~Aa~~~ 457 (465)
.-.+.+-..|||+.|+.-+
T Consensus 359 ~~npdeaVA~GAAi~aa~l~ 378 (653)
T PRK13411 359 SVNPDEAVALGAAIQAGVLG 378 (653)
T ss_pred CCCchHHHHHHHHHHHHhhc
Confidence 1226677889999998765
No 92
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=63.05 E-value=41 Score=36.46 Aligned_cols=77 Identities=18% Similarity=0.220 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEecceeccchhHHHHHHHHHHHHhccCCCccEEEEEeCC
Q 012386 364 ELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSND 443 (465)
Q Consensus 364 ~ia~~V~~RaA~l~aagiaaii~~~~~~~~~~~~~~~~~V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l~~a~D 443 (465)
.++++|++=-|..+...+-.+-+..+.. .+ .|.+.||. .+.+.+.+.+-+.+ + ..|......+
T Consensus 382 ~~~RAvlEgia~~~~~~l~~l~~~~g~~------~~--~i~~~GGg-a~s~~w~Qi~ADvl----g----~pV~~~~~~e 444 (520)
T PRK10939 382 TLFRALEENAAIVSACNLQQIAAFSGVF------PS--SLVFAGGG-SKGKLWSQILADVT----G----LPVKVPVVKE 444 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCC------Cc--EEEEeCCc-ccCHHHHHHHHHhc----C----CeeEEecccC
Confidence 3556666655555554444442222321 12 34455664 46787877766654 2 3565555688
Q ss_pred hhHHHHHHHHHHhc
Q 012386 444 GSGIGAALLAASHS 457 (465)
Q Consensus 444 gs~iGAAl~Aa~~~ 457 (465)
++.+|||++|+...
T Consensus 445 ~~alGaA~lA~~~~ 458 (520)
T PRK10939 445 ATALGCAIAAGVGA 458 (520)
T ss_pred chHHHHHHHHHHHh
Confidence 99999999998765
No 93
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=62.77 E-value=37 Score=33.97 Aligned_cols=60 Identities=18% Similarity=0.106 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEecceeccchhHHHHHHHHHHHH
Q 012386 359 RKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKEL 427 (465)
Q Consensus 359 ~~~~~~ia~~V~~RaA~l~aagiaaii~~~~~~~~~~~~~~~~~V~idGsv~~~~~~f~~~l~~~l~~~ 427 (465)
.+.+++.|+.+.+-.|+-+|--|-+....+.. ..+ .|++.||+. +...|.+.+.+++.-+
T Consensus 264 ~~~Gd~~a~~~~~AmayQVaKeIG~~savL~G------~vD--aIvLTGGiA-~~~~f~~~I~~~v~~i 323 (358)
T COG3426 264 IEQGDEKAKLAYEAMAYQVAKEIGAMSAVLKG------KVD--AIVLTGGIA-YEKLFVDAIEDRVSWI 323 (358)
T ss_pred HHcccHHHHHHHHHHHHHHHHHHHhhhhhcCC------CCC--EEEEecchh-hHHHHHHHHHHHHhhh
Confidence 45667777777777777777666655555543 113 799999985 5778888998888654
No 94
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=61.08 E-value=45 Score=35.97 Aligned_cols=46 Identities=26% Similarity=0.446 Sum_probs=32.0
Q ss_pred EEEecceeccchhHHHHHHHHHHHHhccCCCccEEEEEeCChhHHHHHHHHHHhc
Q 012386 403 IALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHS 457 (465)
Q Consensus 403 V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l~~a~Dgs~iGAAl~Aa~~~ 457 (465)
|.+.||.. +.+.+.+.+.+.+ + ..|.+...++++.+|||++|+.+.
T Consensus 410 i~~~GG~a-~s~~w~Qi~Adv~----g----~pV~~~~~~e~~alGaAl~aa~a~ 455 (504)
T PTZ00294 410 LRVDGGLT-KNKLLMQFQADIL----G----KDIVVPEMAETTALGAALLAGLAV 455 (504)
T ss_pred EEEecccc-cCHHHHHHHHHHh----C----CceEecCcccchHHHHHHHHHhhc
Confidence 55666665 5677777766654 2 245555567889999999998776
No 95
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=60.56 E-value=96 Score=31.39 Aligned_cols=55 Identities=18% Similarity=0.244 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHcCCCeeEEEEEechHHHhhcccccC--CceEEEEEEcccc-ceeEEccC
Q 012386 207 VVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHN--KDAIAAVILGTGT-NAAYVERA 263 (465)
Q Consensus 207 v~~~L~~al~~~gl~v~v~alvNDtvatlla~~y~~--~~~~iglIlGTG~-Na~yie~~ 263 (465)
=.+.+++++++.|+++ +.++|+.+|++++..... +...+-+=+|-|+ +.+.+..+
T Consensus 110 ~r~~~~~a~~~ag~~~--~~li~ep~Aaa~~~g~~~~~~~~~lVvDiGggttdvsvv~~g 167 (336)
T PRK13928 110 EKRAVREAAEQAGAKK--VYLIEEPLAAAIGAGLDISQPSGNMVVDIGGGTTDIAVLSLG 167 (336)
T ss_pred HHHHHHHHHHHcCCCc--eEecccHHHHHHHcCCcccCCCeEEEEEeCCCeEEEEEEEeC
Confidence 4567778887778775 799999999999865532 2333333467777 55555544
No 96
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=60.41 E-value=37 Score=33.99 Aligned_cols=61 Identities=25% Similarity=0.278 Sum_probs=40.5
Q ss_pred EEEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCCccc-CC-cchHHHHHHHHHHHHHHh
Q 012386 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMT-GS-SHELFDYIAAALAKFVAT 157 (465)
Q Consensus 97 ~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~-~~-~~~lfd~Ia~~I~~fl~~ 157 (465)
|-+||+|-.++|..+++..+....++........+.+.+.. +. .++-.+.+.++++.|.+.
T Consensus 2 ~AvIDiGSNsirl~I~~~~~~~~~~l~~~~~~vrL~~~~~~~g~i~~e~i~~~~~~l~~f~~~ 64 (300)
T TIGR03706 2 IAAIDIGSNSVRLVIARGVEGSLQVLFNEKEMVRLGEGLDSTGRLSEEAIERALEALKRFAEL 64 (300)
T ss_pred eEEEEecCCeeeEEEEEecCCcEEEhhheeeeeecCCCCCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 56899999999999999864333344444334556555422 11 346677788888888764
No 97
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=58.95 E-value=54 Score=34.84 Aligned_cols=47 Identities=28% Similarity=0.381 Sum_probs=33.0
Q ss_pred EEEecceeccchhHHHHHHHHHHHHhccCCCccEEEEEeCChhHHHHHHHHHHhcc
Q 012386 403 IALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHSQ 458 (465)
Q Consensus 403 V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l~~a~Dgs~iGAAl~Aa~~~~ 458 (465)
|.+.||.. +.+.+.+.+.+.+ + ..|......+++.+|||++|+...-
T Consensus 394 i~~~GG~s-~s~~~~Q~~Adv~----g----~pv~~~~~~e~~a~GaA~~a~~~~g 440 (481)
T TIGR01312 394 IRLIGGGA-KSPAWRQMLADIF----G----TPVDVPEGEEGPALGAAILAAWALG 440 (481)
T ss_pred EEEecccc-CCHHHHHHHHHHh----C----CceeecCCCcchHHHHHHHHHHhcC
Confidence 55566654 6788877777754 2 2455545678999999999988764
No 98
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=56.76 E-value=32 Score=33.54 Aligned_cols=44 Identities=16% Similarity=0.206 Sum_probs=30.0
Q ss_pred EEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCCcccCCcchHHHHHHHH
Q 012386 98 YALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAA 150 (465)
Q Consensus 98 LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~ 150 (465)
|+||+|-||+++++.+- + +++. .|.+|++.. .+.+++..++...
T Consensus 2 L~iDiGNT~i~~g~~~~-~---~~~~----~~r~~t~~~-~t~de~~~~l~~~ 45 (243)
T TIGR00671 2 LLIDVGNTRIVFALNSG-N---KVYQ----FWRLATNLM-KTYDEHSEFLKEL 45 (243)
T ss_pred EEEEECCCcEEEEEEEC-C---EEEE----EEEecCCCc-cChHHHHHHHHHH
Confidence 78999999999999872 2 2443 356776654 4667766555443
No 99
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=55.55 E-value=94 Score=27.48 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=17.8
Q ss_pred eeEEEEEeCCceEEEEEEEecC
Q 012386 95 GLFYALDLGGTNFRVLRVQLGG 116 (465)
Q Consensus 95 G~~LaiDlGGTNlRv~~V~l~g 116 (465)
+.+||||+|=-.+=+++.+..+
T Consensus 4 ~~iLalD~G~kriGvAv~d~~~ 25 (138)
T PRK00109 4 GRILGLDVGTKRIGVAVSDPLG 25 (138)
T ss_pred CcEEEEEeCCCEEEEEEecCCC
Confidence 4699999999888888776544
No 100
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=54.18 E-value=20 Score=36.46 Aligned_cols=30 Identities=17% Similarity=0.123 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 012386 361 LVVELCDIVATRGARLSAAGIVGILKKLGR 390 (465)
Q Consensus 361 ~~~~ia~~V~~RaA~l~aagiaaii~~~~~ 390 (465)
...++|..+.+.+...++.+|--+....+.
T Consensus 249 ~~~~~A~~i~~~~~~~m~~ai~~v~~~~G~ 278 (318)
T TIGR03123 249 DVRNLAKYYYEAQLEQLTEAIEEVLERYGL 278 (318)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 466788888888888888888777766544
No 101
>PRK00047 glpK glycerol kinase; Provisional
Probab=53.93 E-value=64 Score=34.69 Aligned_cols=46 Identities=22% Similarity=0.254 Sum_probs=32.5
Q ss_pred EEEecceeccchhHHHHHHHHHHHHhccCCCccEEEEEeCChhHHHHHHHHHHhc
Q 012386 403 IALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHS 457 (465)
Q Consensus 403 V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l~~a~Dgs~iGAAl~Aa~~~ 457 (465)
|.+.||. .+.+.+.+.+.+.+ + ..|......+++.+|||++|+.+.
T Consensus 407 i~~~GGg-a~s~~w~Qi~ADvl----g----~pV~~~~~~e~~a~GaA~~A~~~~ 452 (498)
T PRK00047 407 LRVDGGA-VANNFLMQFQADIL----G----VPVERPVVAETTALGAAYLAGLAV 452 (498)
T ss_pred EEEecCc-ccCHHHHHHHHHhh----C----CeeEecCcccchHHHHHHHHhhhc
Confidence 4455554 47888888877754 2 245554567899999999998876
No 102
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=53.16 E-value=17 Score=38.18 Aligned_cols=74 Identities=20% Similarity=0.288 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEecceeccchhHHHHHHHHHHHHhccCCCccEEE-
Q 012386 360 KLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVI- 438 (465)
Q Consensus 360 ~~~~~ia~~V~~RaA~l~aagiaaii~~~~~~~~~~~~~~~~~V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l- 438 (465)
++..-+|+.|.+|.+.+ +.+..+.. + .|.+.||+. +++.+.+.+++.+.+-.+. ..|.+
T Consensus 358 DIaAGL~~SIA~Rv~s~--------l~r~~~i~------~--~VvftGGvA-~N~gvv~aLe~~L~~~~~~---~~V~Vp 417 (432)
T TIGR02259 358 DILAGLHRAIILRAISI--------ISRSGGIT------D--QFTFTGGVA-KNEAAVKELRKLIKENYGE---VQINID 417 (432)
T ss_pred HHHHHHHHHHHHHHHHH--------HhcccCCC------C--CEEEECCcc-ccHHHHHHHHHHHccccCC---CeEecC
Confidence 45667888888887655 34442210 2 478999986 5788888888776432211 12222
Q ss_pred EEeCChhHHHHHHHH
Q 012386 439 EHSNDGSGIGAALLA 453 (465)
Q Consensus 439 ~~a~Dgs~iGAAl~A 453 (465)
....-.+-+|||+.|
T Consensus 418 ~~pq~~GALGAAL~a 432 (432)
T TIGR02259 418 PDSIYTGALGASEFA 432 (432)
T ss_pred CCccHHHHHHHHHhC
Confidence 122345566666653
No 103
>PRK13324 pantothenate kinase; Reviewed
Probab=52.94 E-value=38 Score=33.42 Aligned_cols=44 Identities=14% Similarity=0.402 Sum_probs=28.8
Q ss_pred EEEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCC-CcccCCcchHHHHHHH
Q 012386 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPP-HLMTGSSHELFDYIAA 149 (465)
Q Consensus 97 ~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~-~~~~~~~~~lfd~Ia~ 149 (465)
.|+||+|-||++.++.+ ++ ++.. .+.+++ +. ..+.++++-++..
T Consensus 2 iL~iDiGNT~ik~gl~~--~~--~~~~----~~r~~t~~~-~~t~de~~~~l~~ 46 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFD--GD--RIVS----QIRYATSSV-DSTSDQMGVFLRQ 46 (258)
T ss_pred EEEEEeCCCceEEEEEE--CC--EEEE----EEEEecCcc-ccchHHHHHHHHH
Confidence 68999999999999997 22 2442 355665 33 3456665555544
No 104
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=52.79 E-value=1.1e+02 Score=30.01 Aligned_cols=43 Identities=21% Similarity=0.291 Sum_probs=28.5
Q ss_pred EEEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCCcccCCcchHHHHHH
Q 012386 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIA 148 (465)
Q Consensus 97 ~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia 148 (465)
+|.||+|-||+.+++.+ ++ .... .|.++++.. .+.+++..++.
T Consensus 2 ~L~iDiGNT~~~~a~~~-~~---~~~~----~~r~~t~~~-~~~del~~~~~ 44 (251)
T COG1521 2 LLLIDIGNTRIVFALYE-GG---KVVQ----TWRLATEDL-LTEDELGLQLH 44 (251)
T ss_pred eEEEEeCCCeEEEEEec-CC---eEEE----EEeeccccc-ccHHHHHHHHH
Confidence 68999999999999987 33 2442 466666643 24555555443
No 105
>PRK10331 L-fuculokinase; Provisional
Probab=52.71 E-value=69 Score=34.15 Aligned_cols=46 Identities=13% Similarity=0.152 Sum_probs=31.7
Q ss_pred EEEecceeccchhHHHHHHHHHHHHhccCCCccEEEEEeCChhHHHHHHHHHHhc
Q 012386 403 IALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHS 457 (465)
Q Consensus 403 V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l~~a~Dgs~iGAAl~Aa~~~ 457 (465)
|.+.||. .+.+.+.+.+.+.+ + ..|++....+++.+|||++|+.+.
T Consensus 393 i~~~GGg-a~s~~w~Qi~Advl----g----~pV~~~~~~e~~a~GaA~la~~~~ 438 (470)
T PRK10331 393 LLLVGGG-SRNALWNQIKANML----D----IPIKVLDDAETTVAGAAMFGWYGV 438 (470)
T ss_pred EEEEccc-ccCHHHHHHHHHhc----C----CeeEecCcccchHHHHHHHHHHhc
Confidence 3344444 36888887777654 2 355555567899999999998876
No 106
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=52.69 E-value=2.4e+02 Score=31.24 Aligned_cols=53 Identities=17% Similarity=0.181 Sum_probs=35.6
Q ss_pred HHHHHHHHHHcCCCeeEEEEEechHHHhhcccccC--CceEEEEEEccccceeEEcc
Q 012386 208 VGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHN--KDAIAAVILGTGTNAAYVER 262 (465)
Q Consensus 208 ~~~L~~al~~~gl~v~v~alvNDtvatlla~~y~~--~~~~iglIlGTG~Na~yie~ 262 (465)
.+.+.+|.+..|+++ +.++|+.+|++++-.+.. +..+.=+=||-||=-+=+..
T Consensus 136 R~at~~A~~iaGl~v--lrlinEPtAAAlayg~~~~~~~~vlV~DlGGGTfDvSll~ 190 (579)
T COG0443 136 RQATKDAARIAGLNV--LRLINEPTAAALAYGLDKGKEKTVLVYDLGGGTFDVSLLE 190 (579)
T ss_pred HHHHHHHHHHcCCCe--EEEecchHHHHHHhHhccCCCcEEEEEEcCCCCEEEEEEE
Confidence 455667776778886 699999999999866543 33444445777774444433
No 107
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=52.65 E-value=69 Score=34.41 Aligned_cols=47 Identities=21% Similarity=0.310 Sum_probs=33.4
Q ss_pred EEEEecceeccchhHHHHHHHHHHHHhccCCCccEEEEEeCChhHHHHHHHHHHhc
Q 012386 402 VIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHS 457 (465)
Q Consensus 402 ~V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l~~a~Dgs~iGAAl~Aa~~~ 457 (465)
.|.+.||.. +.+.+.+.+.+.+ + ..|......+++.+|||++|+.+.
T Consensus 402 ~i~~~GGga-~s~~w~Qi~ADv~----g----~pv~~~~~~e~~alGaA~~a~~~~ 448 (493)
T TIGR01311 402 KLRVDGGMT-NNNLLMQFQADIL----G----VPVVRPKVTETTALGAAYAAGLAV 448 (493)
T ss_pred eEEEecccc-cCHHHHHHHHHhc----C----CeeEecCCCcchHHHHHHHHHhhc
Confidence 355666654 7888888877754 2 245554557899999999998776
No 108
>PRK04123 ribulokinase; Provisional
Probab=51.38 E-value=66 Score=35.06 Aligned_cols=41 Identities=20% Similarity=0.216 Sum_probs=30.2
Q ss_pred cCCC--eeEEEEEechHHHhhcccccCCceEEEEEEccccceeEE
Q 012386 218 IGLD--MRVAALVNDTIGTLAGGRYHNKDAIAAVILGTGTNAAYV 260 (465)
Q Consensus 218 ~gl~--v~v~alvNDtvatlla~~y~~~~~~iglIlGTG~Na~yi 260 (465)
.|++ +.|++-.-|+.+++++..- . ...+.+++||+.-...+
T Consensus 260 ~GL~~g~pV~~g~~D~~aa~~G~g~-~-~g~~~~~~GTs~~~~~~ 302 (548)
T PRK04123 260 LGLPEGVAVSVGAFDAHMGAVGAGA-E-PGTLVKVMGTSTCDILL 302 (548)
T ss_pred hCCCCCCeEEecchhhhhhhcccCc-C-CCcEEEEecCceEEEEe
Confidence 3774 5678999999999998765 3 34467999998654444
No 109
>PRK03657 hypothetical protein; Validated
Probab=51.32 E-value=41 Score=31.02 Aligned_cols=58 Identities=22% Similarity=0.432 Sum_probs=41.6
Q ss_pred HcCCCHHHHHH---HHHHHHHHHHHhhcCCCCCCcceeccccccCCCC----Ccce-eEEEEEeCCc
Q 012386 47 KCGTPIGKLRQ---VADAMTVEMHAGLASEGGSKLKMLISYVDNLPTG----DEKG-LFYALDLGGT 105 (465)
Q Consensus 47 ~~~~~~~~L~~---i~~~~~~em~~gL~~~~~s~~~Mlpt~v~~lP~G----~E~G-~~LaiDlGGT 105 (465)
.+.+|.+.|++ ++.....+|-+|..+.-++++..--|-+.. |+| ++.| .|+||...+.
T Consensus 70 lLgV~~~~i~~~gavS~e~A~~MA~g~~~~~~aDiala~TG~AG-P~g~~~~kpvGtV~iai~~~~~ 135 (170)
T PRK03657 70 ILSVSQQSLERYSAVSEAVVAEMATGAIERADADISIAISGYGG-PEGGEDGTPAGTVWFAWNIKGQ 135 (170)
T ss_pred hcCCCHHHHHhcCCCCHHHHHHHHHHHHHHcCCCEEEEeccccC-CCCCCCCCCCeEEEEEEEcCCc
Confidence 35688888877 888888888888766555777777777754 665 3456 5888876653
No 110
>PRK00180 acetate kinase A/propionate kinase 2; Reviewed
Probab=50.11 E-value=1.4e+02 Score=31.45 Aligned_cols=47 Identities=15% Similarity=0.130 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEecceeccchhHHHHHHHHHHH
Q 012386 368 IVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKE 426 (465)
Q Consensus 368 ~V~~RaA~l~aagiaaii~~~~~~~~~~~~~~~~~V~idGsv~~~~~~f~~~l~~~l~~ 426 (465)
..+.|.++++++-.+.+- +.. + .|++.||+-++.+.+++.+.+.+.-
T Consensus 304 ~f~yri~k~Iga~~a~L~---g~v-------D--aiVfTGGIgE~s~~lr~~I~~~l~~ 350 (402)
T PRK00180 304 VFVYRLAKYIGSYAAALN---GRL-------D--AIVFTAGIGENSALVREKVLEGLEF 350 (402)
T ss_pred HHHHHHHHHHHHHHHHhc---CCC-------C--EEEEcCccccCCHHHHHHHHhhhhh
Confidence 345555566665544432 221 3 6889999999999999999998854
No 111
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=49.40 E-value=96 Score=30.70 Aligned_cols=73 Identities=26% Similarity=0.348 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEecceeccchhHHHHHHHHHHHHhccCCCccEEE
Q 012386 359 RKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVI 438 (465)
Q Consensus 359 ~~~~~~ia~~V~~RaA~l~aagiaaii~~~~~~~~~~~~~~~~~V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l 438 (465)
-++..-+|+.|.+|.+.+ +++++... + .|.+.||+. +++.+.+.+++.+... ...+.+
T Consensus 187 edI~aGl~~sia~r~~~~--------~~~~~~~~------~--~v~~~GGva-~n~~~~~~le~~l~~~-----~~~~~v 244 (262)
T TIGR02261 187 PNILKGIHESMADRLAKL--------LKSLGALD------G--TVLCTGGLA-LDAGLLEALKDAIQEA-----KMAVAA 244 (262)
T ss_pred HHHHHHHHHHHHHHHHHH--------HhccCCCC------C--cEEEECccc-ccHHHHHHHHHHhccC-----CcceEe
Confidence 356667888888876543 34554310 2 478899975 5788888887766321 112333
Q ss_pred EEeC---ChhHHHHHHHH
Q 012386 439 EHSN---DGSGIGAALLA 453 (465)
Q Consensus 439 ~~a~---Dgs~iGAAl~A 453 (465)
..-+ -.+-+|||++|
T Consensus 245 ~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 245 ENHPDAIYAGAIGAALWG 262 (262)
T ss_pred cCCCcchHHHHHHHHHcC
Confidence 2223 35567777753
No 112
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=49.35 E-value=1.1e+02 Score=27.56 Aligned_cols=59 Identities=12% Similarity=0.063 Sum_probs=35.9
Q ss_pred eEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCCcccCCcchHHHHHHHHHHHHHHhhC
Q 012386 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEG 159 (465)
Q Consensus 96 ~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~ 159 (465)
.+||||.|-+|+=.++++..++...++ .......+.+. +..+=...|.+.|.+++....
T Consensus 1 rILGIDPGl~~~G~av~~~~~~~~~~~--~~g~i~t~~~~---~~~~rl~~I~~~l~~~i~~~~ 59 (154)
T cd00529 1 RILGIDPGSRNTGYGVIEQEGRKLIYL--ASGVIRTSSDA---PLPSRLKTIYDGLNEVIDQFQ 59 (154)
T ss_pred CEEEEccCcCceEEEEEEeeCCeEEEE--EeeEEECCCCC---CHHHHHHHHHHHHHHHHHHhC
Confidence 379999999999999998866432233 22233444221 222334556677777776554
No 113
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=49.17 E-value=2.9e+02 Score=27.70 Aligned_cols=137 Identities=13% Similarity=0.126 Sum_probs=73.2
Q ss_pred EEEEeCCceEEEEEEEecCCcceeEEEEeeeee-c--------CCCcccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCC
Q 012386 98 YALDLGGTNFRVLRVQLGGREGRVVKQEFEEVS-I--------PPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGR 168 (465)
Q Consensus 98 LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~-i--------p~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~ 168 (465)
||||--...+-+++++-++ +++.+...... . |.. ....--+.|-..|++.+++.+.+. .+
T Consensus 1 LaidTs~~~~sval~~~~~---~il~~~~~~~~~~~~~~gGi~p~~----~~~~H~~~l~~~i~~~l~~~~~~~----~d 69 (305)
T TIGR00329 1 LGIETSCDDTGVAIVDEEG---NVLANIKISQIPLHAKYGGVVPEE----ASRHHAENIPPLLERALIESNVDK----SE 69 (305)
T ss_pred CEEecCccceEEEEEECCC---cEEEEEEecccccccccCCcCcch----hHHHHHHHHHHHHHHHHHHcCCCH----HH
Confidence 5778777778888886323 25543311111 1 211 122234445555566666555432 34
Q ss_pred cceeeeee---ecccccccCCceEEeccCCccccCCCCCCcHHHHHHHHHHHcCCCeeEEEEEechHHHhhccccc-C--
Q 012386 169 QRELGFTF---SFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH-N-- 242 (465)
Q Consensus 169 ~~~lG~tf---SfPv~q~~i~~g~Li~wtKgF~~~~~~g~dv~~~L~~al~~~gl~v~v~alvNDtvatlla~~y~-~-- 242 (465)
...+++|. ||+. |. +|....+-|-.++ ++|+ .-+|.--+-+++..|. +
T Consensus 70 id~iav~~GPG~~tg------------lr--------vg~~~Ak~la~~~---~~p~---~~v~hl~~ha~~a~~~s~~~ 123 (305)
T TIGR00329 70 IDLIAYTQGPGLGGS------------LR--------VGATFARSLALSL---DKPL---IGVNHLLGHIYAPRLDTNIL 123 (305)
T ss_pred CCEEEEecCCCchhh------------HH--------HHHHHHHHHHHHh---CCCE---eecccHHHHHHHhhhhcCCC
Confidence 45566665 3332 11 3566677777777 7885 4456555555555553 3
Q ss_pred CceEEEEEEccccceeEEccC-CCCcccCC
Q 012386 243 KDAIAAVILGTGTNAAYVERA-HAIPKWHG 271 (465)
Q Consensus 243 ~~~~iglIlGTG~Na~yie~~-~~i~k~~~ 271 (465)
....+.+++.-|+..-|..+. ..+..+..
T Consensus 124 ~~~~l~l~vsGG~t~l~~~~~~~~~~~l~~ 153 (305)
T TIGR00329 124 QFPFVSLLVSGGHTQIIAVKGIGDYEVLGE 153 (305)
T ss_pred CCCcEEEEEcCCceEEEEEeCCCcEEEeee
Confidence 467888888778765554433 24444433
No 114
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=47.31 E-value=1.1e+02 Score=27.36 Aligned_cols=58 Identities=16% Similarity=0.166 Sum_probs=32.0
Q ss_pred EEEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCCcccCCcchHHHHHHHHHHHHHHhhC
Q 012386 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEG 159 (465)
Q Consensus 97 ~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~ 159 (465)
.||||-|-++.-.++++..++.-..+.. -..+++... +..+=...|.+.+.++++++.
T Consensus 1 ILGIDPgl~~tG~avi~~~~~~~~~i~~--G~I~t~~~~---~~~~Rl~~I~~~l~~li~~~~ 58 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIEEDGGKLRLIDY--GTIKTSSKD---SLPERLKEIYEELEELIEEYN 58 (149)
T ss_dssp EEEEE--SSEEEEEEEEEETTEEEEEEE--EEEE---S-----HHHHHHHHHHHHHHHHHHH-
T ss_pred CEEECCCCCCeeEEEEEeeCCEEEEEEe--CeEECCCCC---CHHHHHHHHHHHHHHHHHhhC
Confidence 4899999999999999997654333322 234444331 222333456666677776654
No 115
>PRK13326 pantothenate kinase; Reviewed
Probab=46.78 E-value=46 Score=32.90 Aligned_cols=45 Identities=16% Similarity=0.250 Sum_probs=30.9
Q ss_pred eEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCCcccCCcchHHHHHHH
Q 012386 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAA 149 (465)
Q Consensus 96 ~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~ 149 (465)
..|+||+|-||+++++.+ ++ +++. .|.++++. ..+.+++..++..
T Consensus 7 ~~L~IDiGNT~ik~glf~-~~---~l~~----~~r~~t~~-~~t~de~~~~l~~ 51 (262)
T PRK13326 7 SQLIIDIGNTSISFALYK-DN---KMQI----FCKLKTKL-DLSFDELYSFLKE 51 (262)
T ss_pred EEEEEEeCCCeEEEEEEE-CC---EEEE----EEEeccCC-CCCHHHHHHHHhc
Confidence 479999999999999997 23 2442 35666654 3466777666643
No 116
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=46.70 E-value=1e+02 Score=32.84 Aligned_cols=46 Identities=17% Similarity=0.182 Sum_probs=31.4
Q ss_pred EEEecceeccchhHHHHHHHHHHHHhccCCCccEEEEEeCChhHHHHHHHHHHhc
Q 012386 403 IALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHS 457 (465)
Q Consensus 403 V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l~~a~Dgs~iGAAl~Aa~~~ 457 (465)
|.+.||- .+.+.+.+.+.+.+ + ..|.+....+++.+|||++|+.+.
T Consensus 397 i~~~GGg-a~s~~w~Qi~Adv~----g----~pV~~~~~~e~~~lGaA~~a~~a~ 442 (465)
T TIGR02628 397 LLLVGGG-SKNTLWNQIRANML----D----IPVKVVDDAETTVAGAAMFGFYGV 442 (465)
T ss_pred EEEecCc-cCCHHHHHHhhhhc----C----CeeEeccCCcchHHHHHHHHHHhc
Confidence 4444443 36788877776643 2 355555557889999999999876
No 117
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=45.62 E-value=1.1e+02 Score=33.16 Aligned_cols=49 Identities=18% Similarity=0.274 Sum_probs=33.2
Q ss_pred EEEEecceeccchhHHHHHHHHHHHHhccCCCccEEEEEeCChhHHHHHHHHHHhcc
Q 012386 402 VIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHSQ 458 (465)
Q Consensus 402 ~V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l~~a~Dgs~iGAAl~Aa~~~~ 458 (465)
.|.+.||...+.+.+.+.+.+.+ + ..|......+++.+|||++|+.+.-
T Consensus 438 ~i~~~GGg~a~s~~w~Qi~Adv~----g----~pV~~~~~~e~~a~GaA~lA~~~~G 486 (536)
T TIGR01234 438 ELMAAGGIARKNPVIMQIYADVT----N----RPLQIVASDQAPALGAAIFAAVAAG 486 (536)
T ss_pred eEEEeCCccccCHHHHHHHHHhh----C----CeeEeccCCcchhHHHHHHHHHHcC
Confidence 35566666345777777665543 2 3565555578999999999987763
No 118
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=45.52 E-value=45 Score=35.20 Aligned_cols=81 Identities=20% Similarity=0.214 Sum_probs=41.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEecceeccchhHHHHHHHHHH-HHhccCC
Q 012386 354 TSLKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVK-ELLGEEV 432 (465)
Q Consensus 354 ~~~~d~~~~~~ia~~V~~RaA~l~aagiaaii~~~~~~~~~~~~~~~~~V~idGsv~~~~~~f~~~l~~~l~-~~~~~~~ 432 (465)
.|..|.+.++ +|---+.+|+-.++++.+-.. .+-+ .|-+-|++=. |-... .+++ -++++..
T Consensus 295 itq~DIr~~q--------lAKaAi~aGi~~Ll~~agi~~---~di~--~v~lAG~FG~-~l~~~----~a~~iGLlP~~~ 356 (412)
T PF14574_consen 295 ITQKDIREFQ--------LAKAAIRAGIEILLEEAGISP---EDID--RVYLAGGFGN-YLDPE----SAIRIGLLPDVP 356 (412)
T ss_dssp EEHHHHHHHH--------HHHHHHHHHHHHHHHHTT--G---GG----EEEEECSS-S-EEEHH----HHHHTTSS--S-
T ss_pred EeHHHHHHHH--------HHHHHHHHHHHHHHHHcCCCH---HHcc--EEEEeCcccc-cCCHH----HHhhcCCCCCcc
Confidence 4456666543 333345678888888876321 1113 4667787643 32222 2222 2233332
Q ss_pred CccEEEEEeCChhHHHHHHHHH
Q 012386 433 SETVVIEHSNDGSGIGAALLAA 454 (465)
Q Consensus 433 ~~~v~l~~a~Dgs~iGAAl~Aa 454 (465)
.. +++...++++.||..+..
T Consensus 357 ~~--kv~~~GN~al~GA~~~Ll 376 (412)
T PF14574_consen 357 AE--KVRFVGNAALAGARMALL 376 (412)
T ss_dssp GG--GEEEEC-HHHHHHHHHHH
T ss_pred cc--CEEEECcHHHHHHHHHhC
Confidence 33 357778999999987754
No 119
>COG3734 DgoK 2-keto-3-deoxy-galactonokinase [Carbohydrate transport and metabolism]
Probab=44.85 E-value=19 Score=35.89 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=21.1
Q ss_pred ceeEEEEEeCCceEEEEEEEecCC
Q 012386 94 KGLFYALDLGGTNFRVLRVQLGGR 117 (465)
Q Consensus 94 ~G~~LaiDlGGTNlRv~~V~l~g~ 117 (465)
...|++||=|.||||+-+++-+|+
T Consensus 4 ~~~~i~iDWGTT~~R~wL~~~dg~ 27 (306)
T COG3734 4 EPAYIAIDWGTTNLRAWLVRGDGA 27 (306)
T ss_pred CceEEEEecCCccEEEEEEcCCcc
Confidence 357999999999999999988774
No 120
>PF13941 MutL: MutL protein
Probab=43.40 E-value=83 Score=33.72 Aligned_cols=55 Identities=20% Similarity=0.241 Sum_probs=37.6
Q ss_pred eEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCCcccCCcchHHHHHHHHHHHHHHh
Q 012386 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVAT 157 (465)
Q Consensus 96 ~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~ 157 (465)
.||.+|+|.|.-|+.+|++.....+++-+- .-|+.+ .+ .++..-+-.++++.-+.
T Consensus 1 ~~L~~DiGST~Tk~~l~d~~~~~~~~ig~a----~apTTv--~~-~Dv~~G~~~A~~~l~~~ 55 (457)
T PF13941_consen 1 DVLVVDIGSTYTKVTLFDLVDGEPRLIGQA----EAPTTV--EP-GDVTIGLNNALEQLEEQ 55 (457)
T ss_pred CEEEEEeCCcceEEeEEeccCCccEEEEEE----eCCCCc--Cc-ccHHHHHHHHHHHHHHh
Confidence 389999999999999999655555666554 356655 22 45666666666666443
No 121
>PRK13320 pantothenate kinase; Reviewed
Probab=43.21 E-value=64 Score=31.43 Aligned_cols=18 Identities=17% Similarity=0.390 Sum_probs=16.6
Q ss_pred eEEEEEeCCceEEEEEEE
Q 012386 96 LFYALDLGGTNFRVLRVQ 113 (465)
Q Consensus 96 ~~LaiDlGGTNlRv~~V~ 113 (465)
.+|.||+|.|+++.++++
T Consensus 3 M~L~iDiGNT~ik~~~~~ 20 (244)
T PRK13320 3 MNLVIDIGNTTTKLAVFE 20 (244)
T ss_pred eEEEEEeCCCcEEEEEEE
Confidence 379999999999999997
No 122
>PRK15027 xylulokinase; Provisional
Probab=42.79 E-value=1.4e+02 Score=31.83 Aligned_cols=37 Identities=24% Similarity=0.211 Sum_probs=27.1
Q ss_pred cCCC-eeEEEEEechHHHhhcccccCCceEEEEEEcccc
Q 012386 218 IGLD-MRVAALVNDTIGTLAGGRYHNKDAIAAVILGTGT 255 (465)
Q Consensus 218 ~gl~-v~v~alvNDtvatlla~~y~~~~~~iglIlGTG~ 255 (465)
-|++ +.|++-..|+.+.+++.--.+ ...+.+++||+.
T Consensus 220 ~GL~~~pV~~g~~D~~aa~~g~g~~~-~g~~~~s~GTs~ 257 (484)
T PRK15027 220 WGMATVPVVAGGGDNAAGAVGVGMVD-ANQAMLSLGTSG 257 (484)
T ss_pred hCCCCCeEEecccHHHHHHhccCccc-CCcEEEEecCce
Confidence 3764 556778889999999765443 456788999974
No 123
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=42.39 E-value=11 Score=33.97 Aligned_cols=62 Identities=18% Similarity=0.250 Sum_probs=39.6
Q ss_pred CCCCCcHHHHHHHHHHHcCCCee-EEEEEec------hHHHhhcccccCCceEEE-EEEccccceeEEcc
Q 012386 201 DTVGEDVVGELTKAMERIGLDMR-VAALVND------TIGTLAGGRYHNKDAIAA-VILGTGTNAAYVER 262 (465)
Q Consensus 201 ~~~g~dv~~~L~~al~~~gl~v~-v~alvND------tvatlla~~y~~~~~~ig-lIlGTG~Na~yie~ 262 (465)
|--|.++.+.|.+.|+++|++|. +-.--.| -.+..++.+..+....-| +|+|||++.++.-+
T Consensus 8 DhaG~~lK~~l~~~L~~~g~eV~D~G~~~~~~~~dYpd~a~~va~~V~~g~~~~GIliCGtGiG~siaAN 77 (148)
T PRK05571 8 DHAGFELKEEIIEHLEELGHEVIDLGPDSYDASVDYPDYAKKVAEAVVAGEADRGILICGTGIGMSIAAN 77 (148)
T ss_pred CCchHHHHHHHHHHHHHCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEcCCcHHHHHHHh
Confidence 34578899999999998888752 1111122 244445555444344444 59999999998754
No 124
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=40.25 E-value=61 Score=34.13 Aligned_cols=46 Identities=17% Similarity=0.137 Sum_probs=23.7
Q ss_pred Eecc-eeccchhHHHHHHHHHHHHhccCCCccEE-E-EEe-CChhHHHHHHHHHH
Q 012386 405 LDGG-LFEHYTKFSACMQSTVKELLGEEVSETVV-I-EHS-NDGSGIGAALLAAS 455 (465)
Q Consensus 405 idGs-v~~~~~~f~~~l~~~l~~~~~~~~~~~v~-l-~~a-~Dgs~iGAAl~Aa~ 455 (465)
+.+- ++.-+...-+.+.+++++.+.. ++. . ... ++....|| +-||.
T Consensus 381 i~~~VvftGGvA~N~gvv~aLe~~L~~----~~~~~~V~Vp~~pq~~GA-LGAAL 430 (432)
T TIGR02259 381 ITDQFTFTGGVAKNEAAVKELRKLIKE----NYGEVQINIDPDSIYTGA-LGASE 430 (432)
T ss_pred CCCCEEEECCccccHHHHHHHHHHHcc----ccCCCeEecCCCccHHHH-HHHHH
Confidence 3434 3445566667777777766532 221 2 233 55556665 55544
No 125
>PLN02295 glycerol kinase
Probab=39.36 E-value=1.4e+02 Score=32.21 Aligned_cols=48 Identities=21% Similarity=0.279 Sum_probs=33.4
Q ss_pred EEEEecceeccchhHHHHHHHHHHHHhccCCCccEEEEEeCChhHHHHHHHHHHhcc
Q 012386 402 VIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHSQ 458 (465)
Q Consensus 402 ~V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l~~a~Dgs~iGAAl~Aa~~~~ 458 (465)
.|.+.||. .+.+.+.+.+-+.+ + ..|.....++++.+|||++|+.+.-
T Consensus 415 ~i~~~GGg-a~s~~w~Qi~ADv~----g----~pV~~~~~~e~~alGaA~~A~~~~G 462 (512)
T PLN02295 415 LLRVDGGA-TANNLLMQIQADLL----G----SPVVRPADIETTALGAAYAAGLAVG 462 (512)
T ss_pred eEEEeccc-hhCHHHHHHHHHhc----C----CceEecCccccHHHHHHHHHHhhcC
Confidence 35566665 36888888777754 2 3455445578999999999987763
No 126
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=38.54 E-value=1.2e+02 Score=27.18 Aligned_cols=22 Identities=27% Similarity=0.292 Sum_probs=18.2
Q ss_pred eeEEEEEeCCceEEEEEEEecC
Q 012386 95 GLFYALDLGGTNFRVLRVQLGG 116 (465)
Q Consensus 95 G~~LaiDlGGTNlRv~~V~l~g 116 (465)
+.+||+|+|--.+=|++-+..+
T Consensus 2 ~~ilalD~G~KrIGvA~sd~~~ 23 (141)
T COG0816 2 MRILALDVGTKRIGVAVSDILG 23 (141)
T ss_pred ceEEEEecCCceEEEEEecCCC
Confidence 4689999999999888876654
No 127
>PF11215 DUF3010: Protein of unknown function (DUF3010); InterPro: IPR021378 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=38.37 E-value=84 Score=27.97 Aligned_cols=60 Identities=13% Similarity=0.141 Sum_probs=42.9
Q ss_pred EEEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCCcccCCcchHHHHHHHHHHHHHHhhCC
Q 012386 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGE 160 (465)
Q Consensus 97 ~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~ 160 (465)
..||+|=|+..+++++...++..++......++.++... +.+++=+|- ..+..|+++++.
T Consensus 3 vCGVELkgneaii~ll~~~~~~~~~pdcr~~k~~l~~~~---~~~~vr~Fq-~~f~kl~~dy~V 62 (138)
T PF11215_consen 3 VCGVELKGNEAIICLLSLDDGLFQLPDCRVRKFSLSDDN---STEEVRKFQ-FTFAKLMEDYKV 62 (138)
T ss_pred EEEEEEecCeEEEEEEecCCCceECCccceeEEEcCCCc---cHHHHHHHH-HHHHHHHHHcCC
Confidence 579999999999999998776555666556678887763 455554443 457788877654
No 128
>TIGR01118 lacA galactose-6-phosphate isomerase, LacA subunit. This family contains members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=37.58 E-value=20 Score=32.10 Aligned_cols=59 Identities=14% Similarity=0.171 Sum_probs=37.6
Q ss_pred CCCCcHHHHHHHHHHHcCCCee-EEEEEechH-----HHhhcccccCCceEEE-EEEccccceeEEcc
Q 012386 202 TVGEDVVGELTKAMERIGLDMR-VAALVNDTI-----GTLAGGRYHNKDAIAA-VILGTGTNAAYVER 262 (465)
Q Consensus 202 ~~g~dv~~~L~~al~~~gl~v~-v~alvNDtv-----atlla~~y~~~~~~ig-lIlGTG~Na~yie~ 262 (465)
--|.++.+.|.+.|+++|+.|. +-. +|++ +.-++.+....+...| +|+|||++.++.-+
T Consensus 9 h~G~~lK~~i~~~L~~~G~eV~D~G~--~~~~dYpd~a~~va~~V~~~e~~~GIliCGtGiG~siaAN 74 (141)
T TIGR01118 9 LAGKRLKDVIKNFLVDNGFEVIDVTE--GDGQDFVDVTLAVASEVQKDEQNLGIVIDAYGAGSFMVAT 74 (141)
T ss_pred cchHHHHHHHHHHHHHCCCEEEEcCC--CCCCCcHHHHHHHHHHHHcCCCceEEEEcCCCHhHhhhhh
Confidence 3578899999999998888752 211 3431 2233333333344445 59999999998754
No 129
>PRK08621 galactose-6-phosphate isomerase subunit LacA; Reviewed
Probab=37.58 E-value=25 Score=31.44 Aligned_cols=60 Identities=13% Similarity=0.134 Sum_probs=38.7
Q ss_pred CCCCCcHHHHHHHHHHHcCCCee-EEEEEech-----HHHhhcccccCCceEEE-EEEccccceeEEcc
Q 012386 201 DTVGEDVVGELTKAMERIGLDMR-VAALVNDT-----IGTLAGGRYHNKDAIAA-VILGTGTNAAYVER 262 (465)
Q Consensus 201 ~~~g~dv~~~L~~al~~~gl~v~-v~alvNDt-----vatlla~~y~~~~~~ig-lIlGTG~Na~yie~ 262 (465)
|--|.++++.|.+.|+++|+.|. +-. +|. .+..++++....+...| +|+|||++.++.-+
T Consensus 8 DhaG~~lK~~l~~~L~~~G~eV~D~G~--~~~~dYpd~a~~va~~V~~~~~~~GIliCGTGiG~siaAN 74 (142)
T PRK08621 8 DKAGFELKEVVKDYLEDNKYEVVDVTE--EGAEDFVDSTLAVAKEVNKSEDNLGIVIDAYGAGSFMVAT 74 (142)
T ss_pred CcchHHHHHHHHHHHHHCCCEEEECCC--CCCCCcHHHHHHHHHHHHcCCCceEEEEcCCChhhhhhhh
Confidence 34578899999999998888752 111 232 34444444433333344 59999999998754
No 130
>COG1546 CinA Uncharacterized protein (competence- and mitomycin-induced) [General function prediction only]
Probab=37.20 E-value=1.3e+02 Score=27.64 Aligned_cols=67 Identities=27% Similarity=0.570 Sum_probs=46.4
Q ss_pred cCCCHHHHHH---HHHHHHHHHHHhhcCCCCCCcceeccccccCCCC----Ccce-eEEEEEeCCceEEEEEEEecC
Q 012386 48 CGTPIGKLRQ---VADAMTVEMHAGLASEGGSKLKMLISYVDNLPTG----DEKG-LFYALDLGGTNFRVLRVQLGG 116 (465)
Q Consensus 48 ~~~~~~~L~~---i~~~~~~em~~gL~~~~~s~~~Mlpt~v~~lP~G----~E~G-~~LaiDlGGTNlRv~~V~l~g 116 (465)
+.++.+.|.+ +++.-..||-.|.....++++..=-|-+.. |+| ++.| .|+++.+||+. -+-.+.++|
T Consensus 65 LgV~~~tL~~~GaVSe~~a~eMA~Ga~~~~~ad~aiaiTGiAG-P~Gg~~~kpvGtV~ig~~~~~~~-~~~~~~~~g 139 (162)
T COG1546 65 LGVSPETLEEHGAVSEEVAREMARGAKERAGADIAIAITGIAG-PDGGSEGKPVGTVYIGLAIGGEA-ITIRVNFGG 139 (162)
T ss_pred hCCCHHHHHHcCCcCHHHHHHHHHHHHHhcCCCEEEEEEEeeC-CCCCCCCCCceEEEEEEEcCCce-EEEEEEcCC
Confidence 4578887765 888899999999876666777777788754 884 3456 58888884443 333444544
No 131
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=36.75 E-value=1.7e+02 Score=31.85 Aligned_cols=76 Identities=18% Similarity=0.138 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEecceeccchhHHHHHHHHHHHHhccCCCccEEEEEeCC
Q 012386 364 ELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSND 443 (465)
Q Consensus 364 ~ia~~V~~RaA~l~aagiaaii~~~~~~~~~~~~~~~~~V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l~~a~D 443 (465)
.+.++|++=-|.-+.-.+-.+ +..+. ..+ .|.+.||.. +.+.+.+.+-+.+ + ..|+.....+
T Consensus 417 ~~~rAvlEgiaf~~r~~~e~l-~~~g~------~~~--~i~~~GGga-~s~~w~Qi~ADvl----g----~pV~~~~~~e 478 (541)
T TIGR01315 417 LLYYATMEFIAYGTRQIVEAM-NTAGH------TIK--SIFMSGGQC-QNPLLMQLIADAC----D----MPVLIPYVNE 478 (541)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHcCC------Ccc--EEEEecCcc-cCHHHHHHHHHHH----C----CeeEecChhH
Confidence 455556664444444444333 22222 112 366777764 6777877776654 2 3565555678
Q ss_pred hhHHHHHHHHHHhc
Q 012386 444 GSGIGAALLAASHS 457 (465)
Q Consensus 444 gs~iGAAl~Aa~~~ 457 (465)
++.+|||++|+...
T Consensus 479 ~~alGaA~lA~~~~ 492 (541)
T TIGR01315 479 AVLHGAAMLGAKAA 492 (541)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998765
No 132
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=35.89 E-value=56 Score=33.62 Aligned_cols=51 Identities=25% Similarity=0.352 Sum_probs=37.2
Q ss_pred EEEecceeccchhHHHHHHHHHHHHhccCCCccEEEEEe----CChhHHHHHHHHHHh
Q 012386 403 IALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHS----NDGSGIGAALLAASH 456 (465)
Q Consensus 403 V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l~~a----~Dgs~iGAAl~Aa~~ 456 (465)
|.+.||. ...|.|.+++++.|..+..+.. .+++... ..++-+||+++|...
T Consensus 314 Ivl~GG~-S~i~G~~eRL~~eL~~~~~~~~--~~~v~~~~~~~~~~aW~Ggsilasl~ 368 (393)
T PF00022_consen 314 IVLTGGS-SLIPGFKERLQQELRSLLPSST--KVKVIAPPSDRQFAAWIGGSILASLS 368 (393)
T ss_dssp EEEESGG-GGSTTHHHHHHHHHHHHSGTTS--TEEEE--T-TTTSHHHHHHHHHHTSG
T ss_pred eEEeccc-ccccchHHHHHHHhhhhhhccc--cceeccCchhhhhcccccceeeeccc
Confidence 5556665 3689999999999999866543 4555443 578999999998765
No 133
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=35.35 E-value=2.2e+02 Score=25.92 Aligned_cols=59 Identities=17% Similarity=0.167 Sum_probs=34.5
Q ss_pred eEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCCcccCCcchHHHHHHHHHHHHHHhhC
Q 012386 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEG 159 (465)
Q Consensus 96 ~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~ 159 (465)
.+||||-|-|+.=.++++..++...++ ....++.+... +..+=+..|.+.|.++++++.
T Consensus 3 ~iLGIDPgl~~tG~avi~~~~~~~~~~--~~G~i~t~~~~---~~~~Rl~~I~~~l~~~i~~~~ 61 (164)
T PRK00039 3 RILGIDPGLRRTGYGVIEVEGRRLSYV--ASGVIRTPSDL---DLPERLKQIYDGLSELIDEYQ 61 (164)
T ss_pred EEEEEccccCceeEEEEEecCCeEEEE--EeeEEECCCCC---CHHHHHHHHHHHHHHHHHHhC
Confidence 479999999999999999876532223 22234444431 212224445555566665543
No 134
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=34.92 E-value=2.1e+02 Score=30.61 Aligned_cols=76 Identities=16% Similarity=0.109 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEecceeccchhHHHHHHHHHHHHhccCCCccEEEEEeCC
Q 012386 364 ELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSND 443 (465)
Q Consensus 364 ~ia~~V~~RaA~l~aagiaaii~~~~~~~~~~~~~~~~~V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l~~a~D 443 (465)
.++++|++=-|.-+.-.+-.+-...+.. .+ .|.+.||. .+.+.+.+.+.+.+ + ..|... ..+
T Consensus 348 ~l~RAvlEgva~~~r~~l~~l~~~~g~~------~~--~i~~~GGg-a~s~~w~Qi~ADvl----g----~pV~~~-~~e 409 (471)
T PRK10640 348 ELARCIFDSLALLYADVLHELAQLRGEP------FS--QLHIVGGG-CQNALLNQLCADAC----G----IRVIAG-PVE 409 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC------cc--eEEEECCh-hhhHHHHHHHHHHh----C----CCeeeC-Chh
Confidence 4566777766666666665554322321 02 34445554 45777777776654 2 244332 247
Q ss_pred hhHHHHHHHHHHhc
Q 012386 444 GSGIGAALLAASHS 457 (465)
Q Consensus 444 gs~iGAAl~Aa~~~ 457 (465)
++.+|||++|+++.
T Consensus 410 a~alGaa~~a~~a~ 423 (471)
T PRK10640 410 ASTLGNIGIQLMTL 423 (471)
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999998876
No 135
>PRK07058 acetate kinase; Provisional
Probab=34.71 E-value=2.3e+02 Score=29.85 Aligned_cols=48 Identities=23% Similarity=0.199 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEecceeccchhHHHHHHHHHHHH
Q 012386 367 DIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKEL 427 (465)
Q Consensus 367 ~~V~~RaA~l~aagiaaii~~~~~~~~~~~~~~~~~V~idGsv~~~~~~f~~~l~~~l~~~ 427 (465)
+..+.|.++++++-.+++ ..+ + .|++.||+-++.+.+++.+.+.+.-+
T Consensus 299 d~f~yri~k~IGa~~a~L-g~v----------D--aiVfTGGIgEns~~vr~~i~~~l~~l 346 (396)
T PRK07058 299 DLFALRIAGEIARLAATL-GGL----------D--AVVFTAGIGEHQPAIRAAVCERLAWL 346 (396)
T ss_pred HHHHHHHHHHHHHHHHHh-CCC----------C--EEEECCccccCcHHHHHHHHhhhhhh
Confidence 345667777777766655 322 2 68899999999999999999998643
No 136
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=34.62 E-value=1.1e+02 Score=30.34 Aligned_cols=21 Identities=14% Similarity=0.428 Sum_probs=18.5
Q ss_pred eEEEEEeCCceEEEEEEEecC
Q 012386 96 LFYALDLGGTNFRVLRVQLGG 116 (465)
Q Consensus 96 ~~LaiDlGGTNlRv~~V~l~g 116 (465)
.|+|||+|-|+.++.+++.++
T Consensus 2 ~~~GIDiGStttK~Vlid~~~ 22 (262)
T TIGR02261 2 ITAGIDIGTGAIKTVLFEVDG 22 (262)
T ss_pred eEEEEEcCcccEEEEEEecCC
Confidence 489999999999999998654
No 137
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=34.29 E-value=28 Score=31.15 Aligned_cols=60 Identities=10% Similarity=0.129 Sum_probs=38.3
Q ss_pred CCCCCcHHHHHHHHHHHcCCCeeEEEEEech-----HHHhhcccccCCceEEE-EEEccccceeEEcc
Q 012386 201 DTVGEDVVGELTKAMERIGLDMRVAALVNDT-----IGTLAGGRYHNKDAIAA-VILGTGTNAAYVER 262 (465)
Q Consensus 201 ~~~g~dv~~~L~~al~~~gl~v~v~alvNDt-----vatlla~~y~~~~~~ig-lIlGTG~Na~yie~ 262 (465)
|--|.++.+.|.+.|+++|+.|. -+=.+. .+..++.+....+...| +|+|||++.++.-+
T Consensus 8 DhaG~~lK~~l~~~L~~~g~eV~--D~G~~~~dypd~a~~va~~V~~~e~~~GIliCGtGiG~siaAN 73 (141)
T PRK12613 8 DAHGNALKELIKSFLQEEGYDII--DVTDINSDFIDNTLAVAKAVNEAEGRLGIMVDAYGAGPFMVAT 73 (141)
T ss_pred CcchHHHHHHHHHHHHHCCCEEE--EcCCCCCChHHHHHHHHHHHHcCCCceEEEEcCCCHhHhhhhh
Confidence 34578899999999998887652 111111 23334444433444455 58999999998754
No 138
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=33.01 E-value=2.3e+02 Score=29.95 Aligned_cols=76 Identities=13% Similarity=0.117 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEecceeccchhHHHHHHHHHHHHhccCCCccEEEEEeCCh
Q 012386 365 LCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDG 444 (465)
Q Consensus 365 ia~~V~~RaA~l~aagiaaii~~~~~~~~~~~~~~~~~V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l~~a~Dg 444 (465)
+.++|++=-|..+.-.+-.+-+..+.. .+ .|-+.||- .+.+.+.+.+-+.+ + ..|... .+++
T Consensus 361 l~RAv~Egva~~~r~~~e~l~~~~~~~------~~--~i~~~GGg-a~s~~w~Qi~ADvl----g----~pV~~~-~~e~ 422 (454)
T TIGR02627 361 LARCIFDSLALLYRQVLLELAELRGKP------IS--QLHIVGGG-SQNAFLNQLCADAC----G----IRVIAG-PVEA 422 (454)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCC------cC--EEEEECCh-hhhHHHHHHHHHHh----C----CceEcC-CchH
Confidence 455666655555544444443221221 12 23344443 36777777766654 2 245333 3678
Q ss_pred hHHHHHHHHHHhcc
Q 012386 445 SGIGAALLAASHSQ 458 (465)
Q Consensus 445 s~iGAAl~Aa~~~~ 458 (465)
+.+|||++|+.+.-
T Consensus 423 ~a~GaA~~a~~~~G 436 (454)
T TIGR02627 423 STLGNIGVQLMALD 436 (454)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999998774
No 139
>TIGR00016 ackA acetate kinase. Acetate kinase is involved in the activation of acetate to acetyl CoA and in the secretion of acetate. It catalyzes the reaction ATP + acetate = ADP + acetyl phosphate. Some members of this family have been shown to act on propionate as well as acetate. An example of a propionate/acetate kinase is TdcD of E. coli, an enzyme of an anaerobic pathway of threonine catabolism. It is not known how many members of this family act on additional substrates besides acetate.
Probab=32.32 E-value=1.2e+02 Score=32.00 Aligned_cols=46 Identities=15% Similarity=0.171 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCC-CCcCCCCCceEEEEEecceeccchhHHHHHHHHHHH
Q 012386 368 IVATRGARLSAAGIVGILKKLGR-DTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKE 426 (465)
Q Consensus 368 ~V~~RaA~l~aagiaaii~~~~~-~~~~~~~~~~~~V~idGsv~~~~~~f~~~l~~~l~~ 426 (465)
..+.|.++++++-.+++ +. . + .|++.||+-++.+.+++.+.+.+.-
T Consensus 308 ~f~yri~k~Iga~~a~L----~G~v-------D--aiVFTGGIGEns~~vr~~i~~~l~~ 354 (404)
T TIGR00016 308 MYVHRIAKYIGSYIASL----EGNL-------D--AIVFTGGIGENAATVRELVLEALEF 354 (404)
T ss_pred HHHHHHHHHHHHHHHHh----CCCC-------C--EEEEcCccccCCHHHHHHHHhhhhh
Confidence 44566666666655544 31 1 2 6889999999999999999998854
No 140
>PF01548 DEDD_Tnp_IS110: Transposase; InterPro: IPR002525 Transposase proteins are necessary for efficient DNA transposition. This entry represents the N-terminal region of the pilin gene inverting protein (PIVML) and members of the IS111A/IS1328/IS1533 family of transposases [, ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=32.12 E-value=80 Score=27.43 Aligned_cols=43 Identities=16% Similarity=0.355 Sum_probs=29.1
Q ss_pred EEEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCCcccCCcchHHHHHH
Q 012386 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIA 148 (465)
Q Consensus 97 ~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia 148 (465)
|+|||+|-..+-+++++-.|. ... ...++.+. .+..++++|+.
T Consensus 1 ~vGiDv~k~~~~v~v~~~~~~---~~~----~~~~~~~~--~~~~~l~~~l~ 43 (144)
T PF01548_consen 1 FVGIDVSKDTHDVCVIDPNGE---KLR----RFKFENDP--AGLEKLLDWLA 43 (144)
T ss_pred eEEEEcccCeEEEEEEcCCCc---EEE----EEEEeccc--cchhHHhhhhc
Confidence 799999999999999987763 332 23455442 34566676664
No 141
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=31.96 E-value=63 Score=34.87 Aligned_cols=38 Identities=18% Similarity=0.250 Sum_probs=29.7
Q ss_pred EEechHHHhhcccccCCceEEEEEEccccceeEEccCCC
Q 012386 227 LVNDTIGTLAGGRYHNKDAIAAVILGTGTNAAYVERAHA 265 (465)
Q Consensus 227 lvNDtvatlla~~y~~~~~~iglIlGTG~Na~yie~~~~ 265 (465)
|=-|++|..+...+.+ ...+.++.--|||+=...+...
T Consensus 311 VGADAla~il~tg~~~-sdevslvtD~GTNaEivlg~~~ 348 (614)
T COG3894 311 VGADALAMILSTGIHD-SDEVSLVTDYGTNAEIVLGNRD 348 (614)
T ss_pred cchHHHHHHHhccCcc-ccceEEEEeecccceEEeccCC
Confidence 5569998888887654 4568999999999998877653
No 142
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=31.62 E-value=1.1e+02 Score=27.01 Aligned_cols=21 Identities=19% Similarity=0.218 Sum_probs=18.1
Q ss_pred eEEEEEeCCceEEEEEEEecC
Q 012386 96 LFYALDLGGTNFRVLRVQLGG 116 (465)
Q Consensus 96 ~~LaiDlGGTNlRv~~V~l~g 116 (465)
.+||||+|-..+=+++-+-.+
T Consensus 2 riL~lD~G~kriGiAvsd~~~ 22 (135)
T PF03652_consen 2 RILGLDYGTKRIGIAVSDPLG 22 (135)
T ss_dssp EEEEEEECSSEEEEEEEETTT
T ss_pred eEEEEEeCCCeEEEEEecCCC
Confidence 589999999999998887655
No 143
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=31.50 E-value=2.3e+02 Score=24.72 Aligned_cols=28 Identities=14% Similarity=0.332 Sum_probs=18.3
Q ss_pred cHHHHHHHHHHHcCCCeeEEEEEechHHHhhccc
Q 012386 206 DVVGELTKAMERIGLDMRVAALVNDTIGTLAGGR 239 (465)
Q Consensus 206 dv~~~L~~al~~~gl~v~v~alvNDtvatlla~~ 239 (465)
+.++.|++.+ ++|| .+++--.-|..+..
T Consensus 73 ~f~~~L~~~~---~~~v---~~~DEr~TT~~A~~ 100 (130)
T TIGR00250 73 KFANRLEGRF---GVPV---VLWDERLSTVEAES 100 (130)
T ss_pred HHHHHHHHHh---CCCE---EEEcCCcCHHHHHH
Confidence 4555565555 7886 77777666666665
No 144
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=31.47 E-value=7e+02 Score=26.97 Aligned_cols=137 Identities=14% Similarity=0.123 Sum_probs=70.8
Q ss_pred eEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCCcccCC--cch----HHHHHHHHHHHHHHhhCCCCCCCCCCc
Q 012386 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGS--SHE----LFDYIAAALAKFVATEGEGFHVSPGRQ 169 (465)
Q Consensus 96 ~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~--~~~----lfd~Ia~~I~~fl~~~~~~~~~~~~~~ 169 (465)
.+||||--.-..=+++++.+| +++.... ....... |+ +++ --..|...|++.+++.+... .+.
T Consensus 2 ~il~iets~~~~s~a~~~~~~---~~~~~~~--~~~~~~~--gg~~p~~~~~~H~~~l~~~i~~~l~~~~~~~----~~i 70 (535)
T PRK09605 2 IVLGIEGTAWKTSAGIVDSDG---DVLFNES--DPYKPPS--GGIHPREAAEHHAEAIPKVIKEALEEAGLKP----EDI 70 (535)
T ss_pred EEEEEEccccceEEEEEeCCC---cEEEEEE--eeccCCc--CCCChHHHHHHHHHHHHHHHHHHHHHcCCCH----hhC
Confidence 378999888888999998433 2554332 1222111 11 222 22334444555555544322 234
Q ss_pred ceeeeeeecccccccCCceEEeccCCccccCC-CCCCcHHHHHHHHHHHcCCCeeEEEEEechHHHhhcccccC-CceEE
Q 012386 170 RELGFTFSFPVRQTSIASGDLIKWTKGFSIED-TVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHN-KDAIA 247 (465)
Q Consensus 170 ~~lG~tfSfPv~q~~i~~g~Li~wtKgF~~~~-~~g~dv~~~L~~al~~~gl~v~v~alvNDtvatlla~~y~~-~~~~i 247 (465)
..|++|.. | | ..++ -+|....+-|..++ ++|+ .-+|---|-+++..|.. .+..+
T Consensus 71 d~iav~~g-P----------------g-~~~~l~vg~~~ak~la~~~---~~~~---~~v~h~~aH~~~a~~~~~~~~~l 126 (535)
T PRK09605 71 DLVAFSQG-P----------------G-LGPCLRVVATAARALALSL---DVPL---IGVNHCVAHVEIGRLTTGAEDPV 126 (535)
T ss_pred CEEEECCC-C----------------C-cHhhHHHHHHHHHHHHHHh---CCCe---ecccHHHHHHHHhhhccCCCCCe
Confidence 45555421 1 1 0111 14566677777777 7885 44455555555544422 22228
Q ss_pred EEEEccccceeEEccCCCCc
Q 012386 248 AVILGTGTNAAYVERAHAIP 267 (465)
Q Consensus 248 glIlGTG~Na~yie~~~~i~ 267 (465)
.+++.-|+..-|.-+...+.
T Consensus 127 ~l~vsGg~t~~~~~~~~~~~ 146 (535)
T PRK09605 127 TLYVSGGNTQVLAYLNGRYR 146 (535)
T ss_pred EEEEecCCeEEEEEcCCeEE
Confidence 88998887766654444333
No 145
>TIGR02133 RPI_actino ribose 5-phosphate isomerase. This family is a member of the RpiB/LacA/LacB subfamily (TIGR00689) but lies outside the RpiB equivalog (TIGR01120) which is also a member of that subfamily. Ribose 5-phosphate isomerase is an essential enzyme of the pentose phosphate pathway; a pathway that appears to be present in the actinobacteria. The only candidates for ribose 5-phosphate isomerase in the Actinobacteria are members of this family.
Probab=31.22 E-value=28 Score=31.42 Aligned_cols=61 Identities=16% Similarity=0.088 Sum_probs=38.0
Q ss_pred CCCCcHHHHHHHHHHHcCCCeeEEEE-Eec-h-----HHHhhcccccCCceEEE-EEEccccceeEEcc
Q 012386 202 TVGEDVVGELTKAMERIGLDMRVAAL-VND-T-----IGTLAGGRYHNKDAIAA-VILGTGTNAAYVER 262 (465)
Q Consensus 202 ~~g~dv~~~L~~al~~~gl~v~v~al-vND-t-----vatlla~~y~~~~~~ig-lIlGTG~Na~yie~ 262 (465)
--|.++.+.|.+.|+++|+.|.=..- -.| . .+..++.+........| +|+|||++.++.-+
T Consensus 9 haG~~lK~~l~~~L~~~g~eV~D~G~~~~~~~~dYpd~a~~va~~V~~~~~~~GIliCGtGiG~siaAN 77 (148)
T TIGR02133 9 HAGFEYKEALWLDLAAHEPEVCDVGVYDADDDDDYPCFCIAAAEAVARDAADLGIVIGGSGNGEAIAAN 77 (148)
T ss_pred chhHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCchHHHHHHHHHHhcCCCceEEEEcCCChhheeeec
Confidence 34788999999999988876521111 011 1 23344444444444455 59999999999754
No 146
>PRK12440 acetate kinase; Reviewed
Probab=29.92 E-value=4.4e+02 Score=27.74 Aligned_cols=48 Identities=19% Similarity=0.230 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEecceeccchhHHHHHHHHHHHH
Q 012386 367 DIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKEL 427 (465)
Q Consensus 367 ~~V~~RaA~l~aagiaaii~~~~~~~~~~~~~~~~~V~idGsv~~~~~~f~~~l~~~l~~~ 427 (465)
+..+.|.++++++-.+.+ .. . . .|++.||+-++.+.+++.+.+.+.-+
T Consensus 301 d~f~yri~k~Ig~~~a~l-~g--v--------D--aiVFTgGIGen~~~vr~~i~~~l~~l 348 (397)
T PRK12440 301 EVFTYRVAKYIASYLAAL-DS--L--------D--GIIFTGGIGENSLPIRREILKNLKLL 348 (397)
T ss_pred HHHHHHHHHHHHHHHHHh-CC--C--------C--EEEECCccccCcHHHHHHHHhhhhhh
Confidence 345667777777666655 32 2 3 68899999999999999999998643
No 147
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=29.80 E-value=1.7e+02 Score=33.25 Aligned_cols=47 Identities=26% Similarity=0.364 Sum_probs=29.2
Q ss_pred EEEEecceeccchhHHHHHHHHHHHHhccCCCccEEE---EEeCCh-hHHHHHHHHH
Q 012386 402 VIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVI---EHSNDG-SGIGAALLAA 454 (465)
Q Consensus 402 ~V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l---~~a~Dg-s~iGAAl~Aa 454 (465)
.|++.|||+. +..+++.+.+.+++. .-++.+ .+++|+ -.+|.|++||
T Consensus 661 ~VvLSGGVfq-N~~L~~~L~~~L~~~-----g~~v~~p~~~p~nDgGislGQa~~a~ 711 (711)
T TIGR00143 661 KIVISGGVFY-NRLLLERLAKYLKGL-----GFQFLFHRHLPPGDGGISLGQAVAAA 711 (711)
T ss_pred eEEEeccHHH-HHHHHHHHHHHHHhC-----CCEEEccCCCCCCHHHHHHHHHHHhC
Confidence 5889999986 666777777766541 112222 234454 4578877663
No 148
>PF00871 Acetate_kinase: Acetokinase family; InterPro: IPR000890 Acetate kinase, which is predominantly found in micro-organisms, facilitates the production of acetyl-CoA by phosphorylating acetate in the presence of ATP and a divalent cation [, ]. The enzyme is important in the process of glycolysis, enzyme levels being increased in the presence of excess glucose. The growth of a bacterial mutant lacking acetate kinase has been shown to be inhibited by glucose, suggesting that the enzyme is involved in excretion of excess carbohydrate []. A related enzyme, butyrate kinase, facilitates the formation of butyryl-CoA by phosphorylating butyrate in the presence of ATP to form butyryl phosphate [].; GO: 0016301 kinase activity, 0016774 phosphotransferase activity, carboxyl group as acceptor, 0008152 metabolic process, 0016310 phosphorylation, 0005622 intracellular; PDB: 3P4I_B 3R9P_B 2IIR_J 1SAZ_A 1X9J_D 4DQ8_B 1TUU_A 1TUY_B 1G99_A 1X3N_A ....
Probab=28.56 E-value=1.4e+02 Score=31.26 Aligned_cols=25 Identities=12% Similarity=0.316 Sum_probs=21.1
Q ss_pred ceEEEEEEccccceeEEccCCCCcc
Q 012386 244 DAIAAVILGTGTNAAYVERAHAIPK 268 (465)
Q Consensus 244 ~~~iglIlGTG~Na~yie~~~~i~k 268 (465)
-..|-+=||.|+..|-+.+++.+.-
T Consensus 199 ~~lIvaHLG~G~Sv~A~~~GrsvDt 223 (388)
T PF00871_consen 199 LNLIVAHLGSGASVCAIKNGRSVDT 223 (388)
T ss_dssp -EEEEEEESSSEEEEEEETTEEEEE
T ss_pred cCEEEEEeCCCcEEEEEECCEEEEe
Confidence 4788899999999999999887753
No 149
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=28.38 E-value=40 Score=34.35 Aligned_cols=21 Identities=14% Similarity=0.151 Sum_probs=18.2
Q ss_pred ceeEEEEEeCCceEEEEEEEe
Q 012386 94 KGLFYALDLGGTNFRVLRVQL 114 (465)
Q Consensus 94 ~G~~LaiDlGGTNlRv~~V~l 114 (465)
.+..|.+|+|||++.+.+|.-
T Consensus 127 ~~~~I~~DmGGTTtDi~~i~~ 147 (318)
T TIGR03123 127 IPECLFVDMGSTTTDIIPIID 147 (318)
T ss_pred CCCEEEEEcCccceeeEEecC
Confidence 556999999999999999843
No 150
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=28.24 E-value=1.4e+02 Score=22.34 Aligned_cols=34 Identities=6% Similarity=0.123 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q 012386 35 ARAVAILKEMEEKCGTPIGKLRQVADAMTVEMHA 68 (465)
Q Consensus 35 ~~~~~~l~~~~~~~~~~~~~L~~i~~~~~~em~~ 68 (465)
..++++++.+.+.|..+.+++++=+..|..+|.+
T Consensus 30 ~t~~ei~~~l~~~y~~~~~~~~~dv~~fl~~L~~ 63 (68)
T PF05402_consen 30 RTVEEIVDALAEEYDVDPEEAEEDVEEFLEQLRE 63 (68)
T ss_dssp S-HHHHHHHHHHHTT--HHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 4588999999999999999999999999998865
No 151
>PRK14878 UGMP family protein; Provisional
Probab=28.14 E-value=6.4e+02 Score=25.48 Aligned_cols=59 Identities=17% Similarity=0.201 Sum_probs=33.1
Q ss_pred CCCcHHHHHHHHHHHcCCCeeEEEEEechHHHhhcccccC-CceEEEEEEccccceeEEccCCCCc
Q 012386 203 VGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHN-KDAIAAVILGTGTNAAYVERAHAIP 267 (465)
Q Consensus 203 ~g~dv~~~L~~al~~~gl~v~v~alvNDtvatlla~~y~~-~~~~iglIlGTG~Na~yie~~~~i~ 267 (465)
+|....+-|-.++ ++|+ .-+|-=-+-+++..|.. .+..+.+++.-|+..-|..+...+.
T Consensus 83 vg~~~Ak~la~~~---~~p~---~~v~h~~~Ha~sa~~~s~~~~~l~l~vsGg~t~i~~~~~~~~~ 142 (323)
T PRK14878 83 VGATAARALALKY---NKPL---VPVNHCIAHIEIGRLTTGAKDPVVLYVSGGNTQVLAFRGGRYR 142 (323)
T ss_pred HHHHHHHHHHHHh---CCCc---cccchHHHHHHhhhhcCCCCCCEEEEEEcCCeEEEEEeCCeEE
Confidence 3455667776666 7775 44455555555544532 1223788887787665554433333
No 152
>PLN02669 xylulokinase
Probab=27.96 E-value=2.6e+02 Score=30.75 Aligned_cols=39 Identities=28% Similarity=0.339 Sum_probs=30.0
Q ss_pred HcCCC--eeEEEEEechHHHhhcccccCCceEEEEEEccccc
Q 012386 217 RIGLD--MRVAALVNDTIGTLAGGRYHNKDAIAAVILGTGTN 256 (465)
Q Consensus 217 ~~gl~--v~v~alvNDtvatlla~~y~~~~~~iglIlGTG~N 256 (465)
+.|++ +.|++-..|..+++++.--..+ ..+.+++||..-
T Consensus 266 ~~Gl~~g~pV~~g~gD~~a~~~G~g~~~~-g~~~~slGTs~~ 306 (556)
T PLN02669 266 RFGFSSNCLVVQWSGDNPNSLAGLTLSTP-GDLAISLGTSDT 306 (556)
T ss_pred HhCCCCCCEEEEecchHHHHHhccCCCCC-CeEEEEEcccce
Confidence 34875 5679999999999998776443 468899999753
No 153
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=27.59 E-value=1.2e+02 Score=30.22 Aligned_cols=20 Identities=25% Similarity=0.564 Sum_probs=16.7
Q ss_pred eEEEEEeCCceEEEEEEEecCC
Q 012386 96 LFYALDLGGTNFRVLRVQLGGR 117 (465)
Q Consensus 96 ~~LaiDlGGTNlRv~~V~l~g~ 117 (465)
..||||+||-|.+++. .+|.
T Consensus 4 kilGiDIGGAntk~a~--~DG~ 23 (330)
T COG1548 4 KILGIDIGGANTKIAS--SDGD 23 (330)
T ss_pred eEEEeeccCccchhhh--ccCC
Confidence 4799999999999998 3554
No 154
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=26.84 E-value=49 Score=37.27 Aligned_cols=61 Identities=21% Similarity=0.260 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCCC-CCcceeccc--------cccCCC------------------CCcceeEEEEEeCCce
Q 012386 54 KLRQVADAMTVEMHAGLASEGG-SKLKMLISY--------VDNLPT------------------GDEKGLFYALDLGGTN 106 (465)
Q Consensus 54 ~L~~i~~~~~~em~~gL~~~~~-s~~~Mlpt~--------v~~lP~------------------G~E~G~~LaiDlGGTN 106 (465)
.|..+.+++.+.+++-|...+- ..+.|+-|. ....|. |...|..+++|+|||+
T Consensus 210 ~L~pi~~~yl~~v~~~l~~~g~~~~l~~m~sdGgl~~~~~a~~~pv~tI~SGPAagvvGAa~ltg~~~g~~i~~DmGGTS 289 (674)
T COG0145 210 YLSPILRRYLEAVKDALKERGIKARLMVMQSDGGLVSAEEAREKPVETILSGPAAGVVGAAYLTGLKAGNAIVFDMGGTS 289 (674)
T ss_pred eehHHHHHHHHHHHHHHHhcCCCceeEEEecCCccccHHHHhcCCeeeEeeccHHHHHHHHHhcccccCCEEEEEcCCcc
Confidence 5677777887777776654321 223332211 111232 4555569999999999
Q ss_pred EEEEEEEe
Q 012386 107 FRVLRVQL 114 (465)
Q Consensus 107 lRv~~V~l 114 (465)
.-++++.-
T Consensus 290 tDva~i~~ 297 (674)
T COG0145 290 TDVALIID 297 (674)
T ss_pred eeeeeeec
Confidence 99999864
No 155
>COG0698 RpiB Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]
Probab=26.79 E-value=57 Score=29.51 Aligned_cols=61 Identities=10% Similarity=0.175 Sum_probs=37.4
Q ss_pred CCCCcHHHHHHHHHHHcCCCeeEE-EEEech------HHHhhccccc-CCceEEEEEEccccceeEEcc
Q 012386 202 TVGEDVVGELTKAMERIGLDMRVA-ALVNDT------IGTLAGGRYH-NKDAIAAVILGTGTNAAYVER 262 (465)
Q Consensus 202 ~~g~dv~~~L~~al~~~gl~v~v~-alvNDt------vatlla~~y~-~~~~~iglIlGTG~Na~yie~ 262 (465)
-.|..+.+.+.+.|+.+|++|.=. ...++. .+-.++.+.. +....-=+|+|||++.++.-+
T Consensus 9 hag~~lK~~I~~~Lk~~g~~v~D~G~~~~~~~~dyp~~a~~va~~v~~~~~d~GIliCGTGiG~~iaAN 77 (151)
T COG0698 9 HAGYELKEIIIDHLKSKGYEVIDFGTYTDEGSVDYPDYAKKVAEAVLNGEADLGILICGTGIGMSIAAN 77 (151)
T ss_pred cccHHHHHHHHHHHHHCCCEEEeccccCCCCCcchHHHHHHHHHHHHcCCCCeeEEEecCChhHHHHhh
Confidence 357889999999999888875211 111221 2333333333 334444569999999988654
No 156
>PF02502 LacAB_rpiB: Ribose/Galactose Isomerase; InterPro: IPR003500 This entry represents the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB). Galactose-6-phosphate isomerase (5.3.1.26 from EC) is a heteromultimeric protein consisting of subunits LacA and LacB, and catalyses the conversion of D-galactose 6-phosphate to D-tagatose and 6-phosphate in the tagatose 6-phosphate pathway of lactose catabolism []. Galactose-6-phosphate isomerase is induced by galactose or lactose. This entry represents the LacB subunit. Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology [].; GO: 0005975 carbohydrate metabolic process; PDB: 3HEE_A 3HE8_A 3PH3_B 3PH4_B 3ONO_A 4EM8_B 3S5P_B 1O1X_A 2BES_D 2VVP_D ....
Probab=26.50 E-value=36 Score=30.33 Aligned_cols=61 Identities=13% Similarity=0.188 Sum_probs=37.5
Q ss_pred CCCCcHHHHHHHHHHHcCCCeeEEEEEe-c-----hHHHhhcccccCCc-eEEEEEEccccceeEEcc
Q 012386 202 TVGEDVVGELTKAMERIGLDMRVAALVN-D-----TIGTLAGGRYHNKD-AIAAVILGTGTNAAYVER 262 (465)
Q Consensus 202 ~~g~dv~~~L~~al~~~gl~v~v~alvN-D-----tvatlla~~y~~~~-~~iglIlGTG~Na~yie~ 262 (465)
--|.++.+.|.+.|+++|+.|.=..--. | -.+-.++......+ ..-=+|+|||++.++.-+
T Consensus 8 h~g~~lK~~i~~~L~~~g~eV~D~G~~~~~~~dy~~~a~~va~~V~~~~~d~GIliCgtGiG~~iaAN 75 (140)
T PF02502_consen 8 HAGFELKEAIKEYLEEKGYEVIDFGTYSEDSVDYPDFAEKVAEAVASGEADRGILICGTGIGMSIAAN 75 (140)
T ss_dssp GGGHHHHHHHHHHHHHTTEEEEEESESSTST--HHHHHHHHHHHHHTTSSSEEEEEESSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEeCCCCCCCCCHHHHHHHHHHHHHcccCCeEEEEcCCChhhhhHhh
Confidence 3478899999999998887652111111 1 12333444433334 344469999999988755
No 157
>PRK07157 acetate kinase; Provisional
Probab=26.06 E-value=1.5e+02 Score=31.27 Aligned_cols=47 Identities=19% Similarity=0.136 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEecceeccchhHHHHHHHHHHH
Q 012386 368 IVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKE 426 (465)
Q Consensus 368 ~V~~RaA~l~aagiaaii~~~~~~~~~~~~~~~~~V~idGsv~~~~~~f~~~l~~~l~~ 426 (465)
..+.|.++++++-.+++-..+ . .|++.||+-++.+.+++.+.+.+.-
T Consensus 301 ~f~yri~k~Ig~~~a~L~G~v----------D--aiVFTgGIGen~~~vr~~i~~~l~~ 347 (400)
T PRK07157 301 LYAQKIVDYLANYINKIGKKI----------D--AIVFTAGVGENSAFVRELVINKINI 347 (400)
T ss_pred HHHHHHHHHHHHHHHHhCCCC----------C--EEEECCccccCcHHHHHHHHhhccc
Confidence 445666667666555441112 2 6889999999999999999998754
No 158
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=25.99 E-value=63 Score=32.29 Aligned_cols=20 Identities=25% Similarity=0.469 Sum_probs=15.6
Q ss_pred eEEEEEeCCceEEEEEEEecC
Q 012386 96 LFYALDLGGTNFRVLRVQLGG 116 (465)
Q Consensus 96 ~~LaiDlGGTNlRv~~V~l~g 116 (465)
..|.+|+|||+.-+++|. +|
T Consensus 78 ~~i~vDmGGTTtDi~~i~-~G 97 (290)
T PF01968_consen 78 NAIVVDMGGTTTDIALIK-DG 97 (290)
T ss_dssp SEEEEEE-SS-EEEEEEE-TT
T ss_pred CEEEEeCCCCEEEEEEEE-CC
Confidence 589999999999999995 45
No 159
>COG5146 PanK Pantothenate kinase, acetyl-CoA regulated [Coenzyme metabolism]
Probab=25.53 E-value=79 Score=30.95 Aligned_cols=142 Identities=15% Similarity=0.162 Sum_probs=72.6
Q ss_pred eEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCCcccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCccee-ee
Q 012386 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQREL-GF 174 (465)
Q Consensus 96 ~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~l-G~ 174 (465)
.-+|||+|||=.+|..-....+ + ..+.+.+. ..-+++.+|++..|++-.+.-... -....- |=
T Consensus 19 ~~vaiDiGGtLaKvv~sp~~sn--r------l~F~t~eT---~kId~~ve~l~~li~~h~k~C~~~-----~~liatGGg 82 (342)
T COG5146 19 MKVAIDIGGTLAKVVQSPSQSN--R------LTFKTEET---KKIDQVVEWLNNLIQQHEKLCLTK-----ITLIATGGG 82 (342)
T ss_pred EEEEEecCceeeeeeeCccccc--c------eeeehHhh---hhHHHHHHHHHHHHHHHHhhhhhe-----eeEEecCCc
Confidence 3589999999988754111111 1 12333332 357788888887777653311000 000000 11
Q ss_pred eeecccccccCCceEEeccCCccccCCCCCCcHHHHHHHHHHH--cCCCeeEEEEEechHHHhhcccc----cCCceEEE
Q 012386 175 TFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMER--IGLDMRVAALVNDTIGTLAGGRY----HNKDAIAA 248 (465)
Q Consensus 175 tfSfPv~q~~i~~g~Li~wtKgF~~~~~~g~dv~~~L~~al~~--~gl~v~v~alvNDtvatlla~~y----~~~~~~ig 248 (465)
.|-|- -++.|.|+++ +.-++-.+.|..-|.- ..+|-+ +.+.||..+-.+.-.. .+--..+-
T Consensus 83 a~kfy-----------d~m~~~~~ik-v~r~~eme~li~gl~~fv~~IP~e-vFv~~d~~~e~~~~~~~~~~h~lypyil 149 (342)
T COG5146 83 AYKFY-----------DRMSKQLDIK-VIRENEMEILINGLNYFVINIPAE-VFVEFDAASEGLGILLKEQGHDLYPYIL 149 (342)
T ss_pred chhhH-----------HHHhhhccce-eeecchHHHHHhcccceeeeccHH-Heeeeccccchhhhhhhhccccccceee
Confidence 11111 1445555554 3334434444443311 122322 5888998765554333 23356788
Q ss_pred EEEccccceeEEccCCCC
Q 012386 249 VILGTGTNAAYVERAHAI 266 (465)
Q Consensus 249 lIlGTG~Na~yie~~~~i 266 (465)
+-+|||+.--++-..+..
T Consensus 150 vNiGsGvSilkvtgpsqf 167 (342)
T COG5146 150 VNIGSGVSILKVTGPSQF 167 (342)
T ss_pred EeccCCeEEEEecCcchh
Confidence 889999988887654433
No 160
>PTZ00466 actin-like protein; Provisional
Probab=25.36 E-value=45 Score=34.68 Aligned_cols=51 Identities=22% Similarity=0.348 Sum_probs=37.2
Q ss_pred EEEEecceeccchhHHHHHHHHHHHHhccCCCccEEEEEe---CChhHHHHHHHHHH
Q 012386 402 VIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHS---NDGSGIGAALLAAS 455 (465)
Q Consensus 402 ~V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l~~a---~Dgs~iGAAl~Aa~ 455 (465)
.|.+.||... .|.|.++++..|+++++.. .++++... +.++-+||+++|..
T Consensus 301 nIvL~GG~Sl-~~Gf~~RL~~EL~~l~p~~--~~v~v~~~~~r~~~aW~GgSilasl 354 (380)
T PTZ00466 301 HIVLSGGTTM-FHGFGDRLLNEIRKFAPKD--ITIRISAPPERKFSTFIGGSILASL 354 (380)
T ss_pred cEEEeCCccc-cCCHHHHHHHHHHHhCCCC--ceEEEecCCCCceeEEECchhhcCc
Confidence 4566666643 8899999999999987653 24555433 45789999999865
No 161
>PRK12615 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=24.85 E-value=27 Score=32.27 Aligned_cols=62 Identities=15% Similarity=0.213 Sum_probs=38.3
Q ss_pred CCCCCcHHHHHHHHHHHcCCCee-EEEEEech-----HHHhhccccc-CCceEEEEEEccccceeEEcc
Q 012386 201 DTVGEDVVGELTKAMERIGLDMR-VAALVNDT-----IGTLAGGRYH-NKDAIAAVILGTGTNAAYVER 262 (465)
Q Consensus 201 ~~~g~dv~~~L~~al~~~gl~v~-v~alvNDt-----vatlla~~y~-~~~~~iglIlGTG~Na~yie~ 262 (465)
|--|.++.+.|.+.|+.+|+.|. +-.-.+|+ ++..++.+.. ++...-=+|+|||++.+..-+
T Consensus 8 DhaG~~lK~~l~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGTGiG~siaAN 76 (171)
T PRK12615 8 DHIVTNEKMAVSDFLKSKGYDVIDCGTYDHTRTHYPIFGKKVGEAVVNGQADLGVCICGTGVGINNAVN 76 (171)
T ss_pred CchhHHHHHHHHHHHHHCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCCEEEEEcCCcHHHHHHHh
Confidence 33578899999999998888752 11111122 2333444443 334444569999999988654
No 162
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=24.43 E-value=7.9e+02 Score=25.32 Aligned_cols=135 Identities=15% Similarity=0.145 Sum_probs=72.1
Q ss_pred eEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCC--Cccc-CCcchHHHHHHHHHHHHHHhhCCCCCCCCCCccee
Q 012386 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPP--HLMT-GSSHELFDYIAAALAKFVATEGEGFHVSPGRQREL 172 (465)
Q Consensus 96 ~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~--~~~~-~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~l 172 (465)
.+||||---...-+++++.++ +++.........+. .+.. .....--+.|...|++.+++.+... .+...+
T Consensus 2 ~iLgIETScd~tsvAl~~~~~---~il~~~~~sq~~~~G~GvvP~~a~r~H~~~l~~~i~~~l~~a~~~~----~did~I 74 (345)
T PTZ00340 2 LALGIEGSANKLGVGIVTSDG---EILSNVRETYITPPGTGFLPRETAQHHREHILSLVKEALEEAKITP----SDISLI 74 (345)
T ss_pred eEEEEEccchhhEEEEEECCC---cEEEEEEeeccccCCCCcCchHHHHHHHHHHHHHHHHHHHHcCCCH----HHCCEE
Confidence 368999888888899998644 25543211111111 0100 0122334455555566665544322 233344
Q ss_pred eeeeecccccccCCceEEeccCCccccCC-CCCCcHHHHHHHHHHHcCCCeeEEEEEechHHHhhcccccCC-ceEEEEE
Q 012386 173 GFTFSFPVRQTSIASGDLIKWTKGFSIED-TVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHNK-DAIAAVI 250 (465)
Q Consensus 173 G~tfSfPv~q~~i~~g~Li~wtKgF~~~~-~~g~dv~~~L~~al~~~gl~v~v~alvNDtvatlla~~y~~~-~~~iglI 250 (465)
++|- +|= -.++ -+|....+-|-.++ ++|+ .=+|--.|-+++..+.++ +--+++.
T Consensus 75 avt~-GPG-----------------l~~~LrVG~~~Ak~LA~a~---~~Pl---igV~HlegHi~a~~l~~~~~~Pl~Ll 130 (345)
T PTZ00340 75 CYTK-GPG-----------------MGAPLSVGAVVARTLSLLW---GKPL---VGVNHCVAHIEMGRLVTGAENPVVLY 130 (345)
T ss_pred EEec-CCC-----------------cHhhHHHHHHHHHHHHHHc---CCCE---eecchHHHHHHHHhhccCCCCCeEEE
Confidence 4432 110 0112 14566777777777 8886 666777777776666321 1118999
Q ss_pred EccccceeEEc
Q 012386 251 LGTGTNAAYVE 261 (465)
Q Consensus 251 lGTG~Na~yie 261 (465)
+.-|+.--+..
T Consensus 131 VSGGhT~l~~~ 141 (345)
T PTZ00340 131 VSGGNTQVIAY 141 (345)
T ss_pred EeCCceEEEEe
Confidence 99998776653
No 163
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=24.39 E-value=61 Score=29.06 Aligned_cols=61 Identities=11% Similarity=0.117 Sum_probs=37.2
Q ss_pred CCCCcHHHHHHHHHHHcCCCee-EEEEEech-----HHHhhcccccCCceEEE-EEEccccceeEEcc
Q 012386 202 TVGEDVVGELTKAMERIGLDMR-VAALVNDT-----IGTLAGGRYHNKDAIAA-VILGTGTNAAYVER 262 (465)
Q Consensus 202 ~~g~dv~~~L~~al~~~gl~v~-v~alvNDt-----vatlla~~y~~~~~~ig-lIlGTG~Na~yie~ 262 (465)
--|.++.+.|.+.|+++|+.|. +-.-.+|. .+-.++.+....+...| +|+|||++.++.-+
T Consensus 8 haG~~lK~~l~~~L~~~g~eV~D~G~~~~~~~dYpd~a~~va~~V~~~~~~~GIliCGtGiG~siaAN 75 (143)
T TIGR01120 8 HAGFILKEEIKAFLVERGVKVIDKGTWSSERTDYPHYAKQVALAVAGGEVDGGILICGTGIGMSIAAN 75 (143)
T ss_pred cchHHHHHHHHHHHHHCCCEEEEeCCCCCCCCCHHHHHHHHHHHHHCCCCceEEEEcCCcHHHHHHHh
Confidence 3478899999999998887652 11111232 22233333333334444 59999999988754
No 164
>PRK10753 transcriptional regulator HU subunit alpha; Provisional
Probab=24.37 E-value=1.7e+02 Score=23.69 Aligned_cols=35 Identities=6% Similarity=0.167 Sum_probs=29.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCC
Q 012386 39 AILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASE 73 (465)
Q Consensus 39 ~~l~~~~~~~~~~~~~L~~i~~~~~~em~~gL~~~ 73 (465)
++++.+.+...++..+...+.+.|.+.|.+.|...
T Consensus 5 eli~~ia~~~~~s~~~~~~~v~~~~~~i~~~L~~g 39 (90)
T PRK10753 5 QLIDVIADKAELSKTQAKAALESTLAAITESLKEG 39 (90)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 45666666778999999999999999999999864
No 165
>PRK00285 ihfA integration host factor subunit alpha; Reviewed
Probab=24.22 E-value=1.7e+02 Score=24.02 Aligned_cols=36 Identities=14% Similarity=0.254 Sum_probs=31.2
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCC
Q 012386 38 VAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASE 73 (465)
Q Consensus 38 ~~~l~~~~~~~~~~~~~L~~i~~~~~~em~~gL~~~ 73 (465)
.++++.+.+...++..+...+.+.|.++|.+.|+..
T Consensus 6 ~el~~~ia~~~~~s~~~v~~vl~~~~~~i~~~L~~g 41 (99)
T PRK00285 6 ADLAEALFEKVGLSKREAKELVELFFEEIRDALENG 41 (99)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHcC
Confidence 456777777788999999999999999999999863
No 166
>TIGR00199 cinA_cterm competence/damage-inducible protein CinA C-terminal domain. CinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species. Several bacterial species have a protein consisting largely of the C-terminal domain of CinA but lacking the N-terminal domain.
Probab=24.05 E-value=2.8e+02 Score=24.80 Aligned_cols=54 Identities=22% Similarity=0.417 Sum_probs=37.0
Q ss_pred cCCCHHHHHH---HHHHHHHHHHHhhcCCCCCCcceeccccccCCCC----Ccce-eEEEEEe
Q 012386 48 CGTPIGKLRQ---VADAMTVEMHAGLASEGGSKLKMLISYVDNLPTG----DEKG-LFYALDL 102 (465)
Q Consensus 48 ~~~~~~~L~~---i~~~~~~em~~gL~~~~~s~~~Mlpt~v~~lP~G----~E~G-~~LaiDl 102 (465)
+.+|.+.|++ ++.....+|-+|..+..++++.---|-+.. |+| ++.| .|++|..
T Consensus 53 LgV~~~~i~~~gavS~e~a~~MA~g~~~~~~adi~ia~TG~AG-P~~~~~~~pvGtv~ial~~ 114 (146)
T TIGR00199 53 LGVSQETLARFGAVSEECAAEMALGVKERFGADVGIAISGIAG-PDGGEEEKPGGTVWFIWII 114 (146)
T ss_pred hCCCHHHHHhcCCCCHHHHHHHHHHHHHHcCCCEEEEeeccCC-CCCCCCCCCCeEEEEEEEe
Confidence 4578888877 888888888888765545777666666643 654 3455 4677654
No 167
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=24.05 E-value=5.3e+02 Score=23.13 Aligned_cols=98 Identities=15% Similarity=0.244 Sum_probs=0.0
Q ss_pred eEEEEEeCCce----EEEEEEEecCCcceeEEEEeeeeecCCCcccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCcce
Q 012386 96 LFYALDLGGTN----FRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRE 171 (465)
Q Consensus 96 ~~LaiDlGGTN----lRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~ 171 (465)
..|+|-.|.-+ ..++.|+.+|+ ++... ++ .......+.-+.-.+.+.+|+.++. +.-
T Consensus 6 rVla~~~g~g~~~~~~~~v~ld~~G~---v~d~~--~~-----~~~~~~~~~~~~~~~~l~~~i~~~k---------P~v 66 (150)
T PF14639_consen 6 RVLALSWGSGDGDDAVFCVVLDENGE---VLDHL--KL-----VYNERDRERKEEDMERLKKFIEKHK---------PDV 66 (150)
T ss_dssp -EEEEE-TT--TTS-EEEEEE-TTS----EEEEE--EE------S-TT-SS-SHHHHHHHHHHHHHH-----------SE
T ss_pred EEEEEEcCCCCCCCCEEEEEECCCCc---EEEEE--EE-----cCCccchHHHHHHHHHHHHHHHHcC---------CeE
Q ss_pred eee-eeecccccccCCceEEeccCCccccCCCCCCcHHHHHHHHHHHcC-------CCeeEEEEEechHHHhhccc
Q 012386 172 LGF-TFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIG-------LDMRVAALVNDTIGTLAGGR 239 (465)
Q Consensus 172 lG~-tfSfPv~q~~i~~g~Li~wtKgF~~~~~~g~dv~~~L~~al~~~g-------l~v~v~alvNDtvatlla~~ 239 (465)
|++ ++|--... +.+.+++.+.+.. ++| .++||.+|-+++..
T Consensus 67 I~v~g~~~~s~~------------------------l~~~v~~~v~~~~~~~~~~~i~V---~~v~~~~A~lY~~S 115 (150)
T PF14639_consen 67 IAVGGNSRESRK------------------------LYDDVRDIVEELDEDEQMPPIPV---VIVDDEVARLYSNS 115 (150)
T ss_dssp EEE--SSTHHHH------------------------HHHHHHHHHHHTTB-TTS-B--E---EE---TTHHHHHTS
T ss_pred EEEcCCChhHHH------------------------HHHHHHHHHHHhhhcccCCCceE---EEECcHHHHHHhcC
No 168
>TIGR00987 himA integration host factor, alpha subunit. This protein forms a site-specific DNA-binding heterodimer with the integration host factor beta subunit. It is closely related to the DNA-binding protein HU.
Probab=23.68 E-value=1.8e+02 Score=23.80 Aligned_cols=36 Identities=8% Similarity=0.177 Sum_probs=30.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCC
Q 012386 38 VAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASE 73 (465)
Q Consensus 38 ~~~l~~~~~~~~~~~~~L~~i~~~~~~em~~gL~~~ 73 (465)
.++++.+.+...++..+...+.+.|.++|...|...
T Consensus 5 ~eli~~ia~~~~~s~~~v~~vv~~~~~~i~~~L~~g 40 (96)
T TIGR00987 5 AEMSEYLFDELGLSKREAKELVELFFEEIRRALENG 40 (96)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHcC
Confidence 356666677778999999999999999999999863
No 169
>PRK08622 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=23.62 E-value=28 Score=32.14 Aligned_cols=61 Identities=15% Similarity=0.198 Sum_probs=37.8
Q ss_pred CCCCcHHHHHHHHHHHcCCCee-EEEEEech-----HHHhhcccccCCc-eEEEEEEccccceeEEcc
Q 012386 202 TVGEDVVGELTKAMERIGLDMR-VAALVNDT-----IGTLAGGRYHNKD-AIAAVILGTGTNAAYVER 262 (465)
Q Consensus 202 ~~g~dv~~~L~~al~~~gl~v~-v~alvNDt-----vatlla~~y~~~~-~~iglIlGTG~Na~yie~ 262 (465)
--|.++.+.|.+.|++.|..|. +-.--+|+ ++..++.+..... ..-=+|+|||++.++.-+
T Consensus 9 haG~~lK~~l~~~L~~~G~eV~D~G~~~~e~~dYpd~a~~va~~V~~g~~d~GIliCGTGiG~siaAN 76 (171)
T PRK08622 9 HIVTDEKMAVSDYLKSKGHEVIDVGTYDFTRTHYPIFGKKVGEAVASGEADLGVCICGTGVGISNAVN 76 (171)
T ss_pred cchHHHHHHHHHHHHHCCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCcEEEEEcCCcHHHHHHHh
Confidence 3578899999999998888752 11111222 2334444443333 444469999999988754
No 170
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=23.54 E-value=7.6e+02 Score=24.82 Aligned_cols=60 Identities=13% Similarity=0.188 Sum_probs=32.6
Q ss_pred CCcHHHHHHHHHHHcCCCeeEEEEEechHHHhhcccccC-CceEEEEEEccccceeEEccCCCCccc
Q 012386 204 GEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHN-KDAIAAVILGTGTNAAYVERAHAIPKW 269 (465)
Q Consensus 204 g~dv~~~L~~al~~~gl~v~v~alvNDtvatlla~~y~~-~~~~iglIlGTG~Na~yie~~~~i~k~ 269 (465)
|....+-|...+ ++|+ .-+|-=-|-+++..|.. .+..+.+++.-|+..-|.-+...+..+
T Consensus 85 g~~~ak~la~~~---~~p~---~~v~h~~aHa~sa~~~s~~~~~lvL~vsGg~t~l~~~~~~~~~~l 145 (322)
T TIGR03722 85 GATAARALALKL---NKPL---VGVNHCVAHIEIGRLTTGAKDPVVLYVSGGNTQVIAYRNGRYRVF 145 (322)
T ss_pred HHHHHHHHHHHh---CCCe---echhhHHHHHHhhhccCCCCCCeEEEEeCCceEEEEEeCCeEEEE
Confidence 444566666666 7775 33454444444444422 122388888888776665554334433
No 171
>smart00411 BHL bacterial (prokaryotic) histone like domain.
Probab=23.42 E-value=1.9e+02 Score=22.99 Aligned_cols=36 Identities=17% Similarity=0.259 Sum_probs=31.2
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCC
Q 012386 38 VAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASE 73 (465)
Q Consensus 38 ~~~l~~~~~~~~~~~~~L~~i~~~~~~em~~gL~~~ 73 (465)
.++++++.+...++..+...+.+.|.++|.+.|...
T Consensus 4 ~eli~~ia~~~~~~~~~v~~vl~~l~~~i~~~L~~g 39 (90)
T smart00411 4 SELIDAIAEKAGLSKKDAKAAVDAFLEIITEALKKG 39 (90)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 456777777888999999999999999999999863
No 172
>PRK12397 propionate kinase; Reviewed
Probab=22.79 E-value=5.3e+02 Score=27.25 Aligned_cols=47 Identities=15% Similarity=0.205 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEecceeccchhHHHHHHHHHHH
Q 012386 367 DIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKE 426 (465)
Q Consensus 367 ~~V~~RaA~l~aagiaaii~~~~~~~~~~~~~~~~~V~idGsv~~~~~~f~~~l~~~l~~ 426 (465)
+..+.|.++++++-.+. ++.. + .|++.||+-++.+..|+.+-+.+.-
T Consensus 302 d~f~yri~k~IGa~~a~----lggv-------D--aiVFTGGIGEns~~vR~~ic~~L~~ 348 (404)
T PRK12397 302 TLFAERIRATIGSYIMQ----MGGL-------D--ALVFTGGIGENSARARSAVCHNLQF 348 (404)
T ss_pred HHHHHHHHHHHHHHHHH----hCCC-------C--EEEECCchhhCCHHHHHHHHhhhhh
Confidence 34566677777766665 2332 2 6889999999999999999998853
No 173
>PRK09604 UGMP family protein; Validated
Probab=22.78 E-value=8.1e+02 Score=24.83 Aligned_cols=139 Identities=14% Similarity=0.157 Sum_probs=70.6
Q ss_pred eEEEEEeCCceEEEEEEEecCCcceeEEEEee-eee--------cCCCcccCCcchHHHHHHHHHHHHHHhhCCCCCCCC
Q 012386 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFE-EVS--------IPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSP 166 (465)
Q Consensus 96 ~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~-~~~--------ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~ 166 (465)
.+|+||--.-..-+++++.+++ ++..... .+. .|... ...--+.|...|++.+++.+...
T Consensus 2 ~iLgIdTS~~~~sval~~~~~~---il~~~~~~~~~~~~~~~Gi~P~~a----~~~H~~~l~~~i~~~L~~~~~~~---- 70 (332)
T PRK09604 2 LILGIETSCDETSVAVVDDGRG---LLSNVVASQIDLHARYGGVVPELA----SRAHVENIVPLIEEALKEAGLTL---- 70 (332)
T ss_pred eEEEEEccccceEEEEEECCCc---EEEEEEecchhcccccCCcCcchh----HHHHHHHHHHHHHHHHHHcCCCH----
Confidence 3689999887888999975432 4432211 111 11111 12233445555566666655432
Q ss_pred CCcceeeeee---ecccccccCCceEEeccCCccccCCCCCCcHHHHHHHHHHHcCCCeeEEEEEechHHHhhccccc-C
Q 012386 167 GRQRELGFTF---SFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH-N 242 (465)
Q Consensus 167 ~~~~~lG~tf---SfPv~q~~i~~g~Li~wtKgF~~~~~~g~dv~~~L~~al~~~gl~v~v~alvNDtvatlla~~y~-~ 242 (465)
.+...+++|. |||. |. .|....+-|..++ ++|+ .-+|=--+..++..|. .
T Consensus 71 ~did~iavt~GPG~~tg------------lr--------vg~~~Ak~La~~~---~ipl---~~v~h~~~ha~~a~~~s~ 124 (332)
T PRK09604 71 EDIDAIAVTAGPGLVGA------------LL--------VGVSFAKALALAL---NKPL---IGVNHLEGHLLAPFLEEE 124 (332)
T ss_pred HHCCEEEEecCCCcHHh------------HH--------HHHHHHHHHHHHh---CCCE---EeecCHHHHHHhhhhccC
Confidence 3456677776 4443 11 2455667776666 6774 3334333333333342 3
Q ss_pred Cc-eEEEEEEccccceeE-EccCCCCcccCC
Q 012386 243 KD-AIAAVILGTGTNAAY-VERAHAIPKWHG 271 (465)
Q Consensus 243 ~~-~~iglIlGTG~Na~y-ie~~~~i~k~~~ 271 (465)
.+ ..+.+++.-|...-+ +.+...+..+..
T Consensus 125 ~~~~~lvl~vsGG~s~~~~~~~~~~~~~l~~ 155 (332)
T PRK09604 125 PEFPFLALLVSGGHTQLVLVKGIGDYELLGE 155 (332)
T ss_pred CCCCEEEEEecCCccEEEEEcCCCcEEEccc
Confidence 34 356666644775544 444445544443
No 174
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=22.47 E-value=4.2e+02 Score=30.08 Aligned_cols=73 Identities=21% Similarity=0.268 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEecceeccchhHHHHHHHHHHHHhccCCCccEEE---EEeCChh
Q 012386 369 VATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVI---EHSNDGS 445 (465)
Q Consensus 369 V~~RaA~l~aagiaaii~~~~~~~~~~~~~~~~~V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l---~~a~Dgs 445 (465)
+...+=..+|-+++.++..+.... .-+ .|++.|||+. ...+.+.+.+.+++.- -++-+ .+.+|||
T Consensus 669 iA~~fh~~la~~~~e~~~~~a~~~----gi~--~V~lsGGVf~-N~~l~~~~~~~l~~~~-----f~~~~~~~~P~~Dgg 736 (750)
T COG0068 669 IATKFHNALAEGFAELAVELAKKY----GIN--KVVLSGGVFQ-NRLLLERLAKYLKKEG-----FRFLFHQEVPAGDGG 736 (750)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc----Ccc--EEEeeCCeee-cHHHHHHHHHHHHhcC-----ceEeeecccCCCCCc
Confidence 344444567777777776654310 002 6999999986 5567777777776531 11211 4457777
Q ss_pred H-HHHHHHH
Q 012386 446 G-IGAALLA 453 (465)
Q Consensus 446 ~-iGAAl~A 453 (465)
+ +|=|+++
T Consensus 737 IslGQ~v~~ 745 (750)
T COG0068 737 ISLGQAVAA 745 (750)
T ss_pred eeHHHHHHH
Confidence 5 6777766
No 175
>PRK03661 hypothetical protein; Validated
Probab=22.44 E-value=3.2e+02 Score=24.95 Aligned_cols=56 Identities=23% Similarity=0.387 Sum_probs=39.2
Q ss_pred HcCCCHHHHHH---HHHHHHHHHHHhhcCCCCCCcceeccccccCCCC----Ccce-eEEEEEeC
Q 012386 47 KCGTPIGKLRQ---VADAMTVEMHAGLASEGGSKLKMLISYVDNLPTG----DEKG-LFYALDLG 103 (465)
Q Consensus 47 ~~~~~~~~L~~---i~~~~~~em~~gL~~~~~s~~~Mlpt~v~~lP~G----~E~G-~~LaiDlG 103 (465)
.+.+|.+.|++ ++.....+|-.|..+.-++++-.--|-+.. |+| +..| .|+||...
T Consensus 64 lLgV~~~~i~~~gavS~e~a~~MA~g~~~~~~ad~~ia~TG~AG-P~g~~~~kpvGtv~i~i~~~ 127 (164)
T PRK03661 64 MIGVREETLAQHGAVSEPVVVEMAIGALKAARADYAVSISGIAG-PDGGSEEKPVGTVWFGFASA 127 (164)
T ss_pred HcCCCHHHHHhcCCCCHHHHHHHHHHHHHHcCCCEEEEecccCC-CCCCCCCCCceEEEEEEEeC
Confidence 35688888877 888888888888765445777777777753 654 4556 58888753
No 176
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=22.08 E-value=94 Score=29.20 Aligned_cols=19 Identities=16% Similarity=0.253 Sum_probs=15.8
Q ss_pred EEEEEeCCceEEEEEEEec
Q 012386 97 FYALDLGGTNFRVLRVQLG 115 (465)
Q Consensus 97 ~LaiDlGGTNlRv~~V~l~ 115 (465)
+|.||+|-|++++++++-+
T Consensus 1 ~L~iDiGNT~ik~~~~~~~ 19 (206)
T PF03309_consen 1 ILLIDIGNTRIKWALFDGD 19 (206)
T ss_dssp EEEEEE-SSEEEEEEEETT
T ss_pred CEEEEECCCeEEEEEEECC
Confidence 6899999999999998653
No 177
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=22.04 E-value=3.1e+02 Score=27.69 Aligned_cols=18 Identities=11% Similarity=0.045 Sum_probs=15.4
Q ss_pred EEEEEeCCceEEEEEEEe
Q 012386 97 FYALDLGGTNFRVLRVQL 114 (465)
Q Consensus 97 ~LaiDlGGTNlRv~~V~l 114 (465)
+||||--...+-+++++.
T Consensus 1 iLaIdTs~~~~sval~~~ 18 (314)
T TIGR03723 1 ILGIETSCDETAVAIVDD 18 (314)
T ss_pred CEEEECcccceEEEEEEC
Confidence 479999999999999974
No 178
>TIGR01119 lacB galactose-6-phosphate isomerase, LacB subunit. This family contains four members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=21.97 E-value=66 Score=29.75 Aligned_cols=61 Identities=20% Similarity=0.218 Sum_probs=37.9
Q ss_pred CCCCcHHHHHHHHHHHcCCCee-EEEEEech-----HHHhhcccccCCceEEE-EEEccccceeEEcc
Q 012386 202 TVGEDVVGELTKAMERIGLDMR-VAALVNDT-----IGTLAGGRYHNKDAIAA-VILGTGTNAAYVER 262 (465)
Q Consensus 202 ~~g~dv~~~L~~al~~~gl~v~-v~alvNDt-----vatlla~~y~~~~~~ig-lIlGTG~Na~yie~ 262 (465)
--|.++.+.|.+.|+++|++|. +-.--+|+ ++..++.+........| +|+|||++.++.-+
T Consensus 9 haG~~lK~~l~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~~~GIliCGTGiG~siaAN 76 (171)
T TIGR01119 9 HIVTDVKMEVSEFLKSKGYEVLDVGTYDFTRTHYPIFGKKVGEAVVSGEADLGVCICGTGVGINNAVN 76 (171)
T ss_pred CchHHHHHHHHHHHHHCCCEEEEeCCCCCCCCChHHHHHHHHHHHHcCCCCEEEEEcCCcHHHHHHHh
Confidence 3578899999999999988752 11111122 23344444433334444 58999999988754
No 179
>PTZ00004 actin-2; Provisional
Probab=21.88 E-value=34 Score=35.47 Aligned_cols=51 Identities=18% Similarity=0.260 Sum_probs=37.6
Q ss_pred EEEEecceeccchhHHHHHHHHHHHHhccCCCccEEEEE---eCChhHHHHHHHHHH
Q 012386 402 VIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEH---SNDGSGIGAALLAAS 455 (465)
Q Consensus 402 ~V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l~~---a~Dgs~iGAAl~Aa~ 455 (465)
.|.+.||.. ..|.|.++++..|+.+++.. .++++.. ...++.+||+++|..
T Consensus 299 nIvl~GG~s-~~~Gf~~RL~~EL~~~~p~~--~~~~v~~~~~~~~~aW~Ggsilas~ 352 (378)
T PTZ00004 299 NIVLSGGTT-MYRGLPERLTKELTTLAPST--MKIKVVAPPERKYSVWIGGSILSSL 352 (378)
T ss_pred hEEeccchh-cCcCHHHHHHHHHHHhCCCC--ccEEEecCCCCceeEEECcccccCc
Confidence 366667754 48999999999999988653 2344433 267889999999865
No 180
>KOG1903 consensus Cell cycle-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=21.84 E-value=69 Score=29.24 Aligned_cols=81 Identities=20% Similarity=0.226 Sum_probs=46.2
Q ss_pred cCCCCCcceeEEEEEeCCc----eEEE-----------EEEEecCCcceeEEEEeeeeecCCCcccCC-cchHHHHHHHH
Q 012386 87 NLPTGDEKGLFYALDLGGT----NFRV-----------LRVQLGGREGRVVKQEFEEVSIPPHLMTGS-SHELFDYIAAA 150 (465)
Q Consensus 87 ~lP~G~E~G~~LaiDlGGT----NlRv-----------~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~-~~~lfd~Ia~~ 150 (465)
.||.|..-.+++|+..=-- |+-. |-|--+|..++-..++..+|+-|+.+-.-. -+-|.|||-..
T Consensus 50 ~LPpgEn~nDW~AVHvVDFFNRiNLiYGTise~Cte~sCP~MsGG~rYEY~WqD~~~ykkPt~L~Ap~Ym~lLMDWIE~~ 129 (217)
T KOG1903|consen 50 RLPPGENLNDWLAVHVVDFFNRINLIYGTISEFCTETSCPVMSGGPRYEYRWQDERKYKKPTALSAPRYMALLMDWIEVQ 129 (217)
T ss_pred cCCCCCCccceeeeehhhhhhhhHhhhhhHhhhccccCCCcccCCCcceeEecccccccCCccCCcHHHHHHHHHHHHHh
Confidence 6899998889998764211 1111 112223444445555556777787762111 23466777544
Q ss_pred HHHHHHhhCCCCCCCCCCcceeeeeeeccc
Q 012386 151 LAKFVATEGEGFHVSPGRQRELGFTFSFPV 180 (465)
Q Consensus 151 I~~fl~~~~~~~~~~~~~~~~lG~tfSfPv 180 (465)
|.+ +..+|...+.|||-
T Consensus 130 INn-------------E~vFPt~~~vpFPK 146 (217)
T KOG1903|consen 130 INN-------------EEVFPTSVGVPFPK 146 (217)
T ss_pred ccc-------------cccccccCCCCCcH
Confidence 322 34788888888884
No 181
>PRK12379 propionate/acetate kinase; Provisional
Probab=21.75 E-value=1.8e+02 Score=30.62 Aligned_cols=47 Identities=19% Similarity=0.210 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEecceeccchhHHHHHHHHHHH
Q 012386 367 DIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKE 426 (465)
Q Consensus 367 ~~V~~RaA~l~aagiaaii~~~~~~~~~~~~~~~~~V~idGsv~~~~~~f~~~l~~~l~~ 426 (465)
+.-+.|.++++++-.+.+ ..+ . .|++.||+-++.+..|+.+-+.+.-
T Consensus 298 d~f~yri~k~IGa~~a~L-~~v----------D--aIVFTGGIGen~~~vR~~i~~~L~~ 344 (396)
T PRK12379 298 KTFVHRIARHIAGHAASL-HRL----------D--GIIFTGGIGENSSLIRRLVMEHLAV 344 (396)
T ss_pred HHHHHHHHHHHHHHHHHh-CCC----------C--EEEECCccccCcHHHHHHHHhhhhh
Confidence 345666777777666554 222 2 6889999999999999999988854
No 182
>PTZ00452 actin; Provisional
Probab=21.17 E-value=67 Score=33.33 Aligned_cols=51 Identities=14% Similarity=0.279 Sum_probs=37.4
Q ss_pred EEEEecceeccchhHHHHHHHHHHHHhccCCCccEEEEEe---CChhHHHHHHHHHH
Q 012386 402 VIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHS---NDGSGIGAALLAAS 455 (465)
Q Consensus 402 ~V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l~~a---~Dgs~iGAAl~Aa~ 455 (465)
.|.+.||.. ..|.|.+++++.|++++++.. ++++... ..++-+||+++|..
T Consensus 296 nIvL~GG~S-l~~Gf~~RL~~El~~~~p~~~--~v~v~~~~~r~~~aW~GgSilasl 349 (375)
T PTZ00452 296 NIVLSGGTT-LFPGIANRLSNELTNLVPSQL--KIQVAAPPDRRFSAWIGGSIQCTL 349 (375)
T ss_pred cEEEecccc-cccCHHHHHHHHHHHhCCCCc--eeEEecCCCcceeEEECchhhcCc
Confidence 466666643 588999999999999886532 4555432 45789999999865
No 183
>PF00216 Bac_DNA_binding: Bacterial DNA-binding protein; InterPro: IPR000119 Bacteria synthesise a set of small, usually basic proteins of about 90 residues that bind DNA and are known as histone-like proteins [, ]. Examples include the HU protein in Escherichia coli is a dimer of closely related alpha and beta chains and in other bacteria can be a dimer of identical chains. HU-type proteins have been found in a variety of eubacteria, cyanobacteria and archaebacteria, and are also encoded in the chloroplast genome of some algae []. The integration host factor (IHF), a dimer of closely related chains which seem to function in genetic recombination as well as in translational and transcriptional control [] is found in enterobacteria and viral proteins include the African Swine fever virus protein A104R (or LMW5-AR) []. The exact function of these proteins is not yet clear but they are capable of wrapping DNA and stabilising it from denaturation under extreme environmental conditions. The structure is known for one of these proteins []. The protein exists as a dimer and two "beta-arms" function as the non-specific binding site for bacterial DNA. ; GO: 0003677 DNA binding; PDB: 3C4I_B 2O97_A 1MUL_A 1P78_A 1P51_C 1P71_B 2HT0_A 1OWG_A 2IIF_A 1OUZ_A ....
Probab=20.94 E-value=2e+02 Score=22.69 Aligned_cols=36 Identities=22% Similarity=0.307 Sum_probs=30.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCC
Q 012386 38 VAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASE 73 (465)
Q Consensus 38 ~~~l~~~~~~~~~~~~~L~~i~~~~~~em~~gL~~~ 73 (465)
.++++.+.+...++..+...+.+.|.++|.+.|...
T Consensus 4 ~eli~~ia~~~~~s~~~v~~vl~~~~~~i~~~L~~g 39 (90)
T PF00216_consen 4 KELIKRIAEKTGLSKKDVEAVLDALFDVIKEALKEG 39 (90)
T ss_dssp HHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 356667777778999999999999999999999753
No 184
>PRK13331 pantothenate kinase; Reviewed
Probab=20.79 E-value=1e+02 Score=30.34 Aligned_cols=20 Identities=15% Similarity=0.175 Sum_probs=18.0
Q ss_pred ceeEEEEEeCCceEEEEEEE
Q 012386 94 KGLFYALDLGGTNFRVLRVQ 113 (465)
Q Consensus 94 ~G~~LaiDlGGTNlRv~~V~ 113 (465)
+-..|+||+|-||+.+++.+
T Consensus 6 ~~~~L~iDiGNT~~~~g~f~ 25 (251)
T PRK13331 6 SNEWLALMIGNSRLHWGYFS 25 (251)
T ss_pred CCcEEEEEeCCCcEEEEEEE
Confidence 44689999999999999997
No 185
>TIGR03285 methan_mark_14 putative methanogenesis marker protein 14. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=20.53 E-value=9.9e+02 Score=25.01 Aligned_cols=80 Identities=19% Similarity=0.312 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEec--ceeccchhHHHHHHHHHHHH-hccCCCcc
Q 012386 359 RKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDG--GLFEHYTKFSACMQSTVKEL-LGEEVSET 435 (465)
Q Consensus 359 ~~~~~~ia~~V~~RaA~l~aagiaaii~~~~~~~~~~~~~~~~~V~idG--sv~~~~~~f~~~l~~~l~~~-~~~~~~~~ 435 (465)
...+|.+|..+..|--..+ -=.+.+. +...|+|.| |+...-|.| +-+++.++ +.++ .+
T Consensus 336 ~~~lD~v~A~i~~Rli~~a-----~e~~li~---------~~t~iGiTGRAgITG~KP~l---Ile~l~~~~~~d~-~d- 396 (445)
T TIGR03285 336 FAVLDDVMALIAKRLIEQA-----SKLGLIQ---------EKTTLGITGRAGITGYKPEL---ILEYLKNSFLWDK-EE- 396 (445)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHcCCCC---------CCCeeeeeeccccCCCChHH---HHHHHHhccccCC-CC-
Confidence 4566777766666643321 1112222 245799988 466666654 34455554 3333 34
Q ss_pred EEEEEeCChhHHHHHHHHHHhcc
Q 012386 436 VVIEHSNDGSGIGAALLAASHSQ 458 (465)
Q Consensus 436 v~l~~a~Dgs~iGAAl~Aa~~~~ 458 (465)
.+++.+||=..|||+.|.|-..
T Consensus 397 -~vVFvdDGLA~GAavMaRCMNs 418 (445)
T TIGR03285 397 -NVVFVDDGLALGAAVMARCMNS 418 (445)
T ss_pred -cEEEeccchhhhHHHHHHHHhc
Confidence 4577789999999999987553
No 186
>PRK11678 putative chaperone; Provisional
Probab=20.31 E-value=92 Score=33.29 Aligned_cols=49 Identities=16% Similarity=0.239 Sum_probs=33.9
Q ss_pred HHHHHHHcCCCeeEEEEEechHHHhhcccc--cCCceEEEEEEcccc-ceeEEc
Q 012386 211 LTKAMERIGLDMRVAALVNDTIGTLAGGRY--HNKDAIAAVILGTGT-NAAYVE 261 (465)
Q Consensus 211 L~~al~~~gl~v~v~alvNDtvatlla~~y--~~~~~~iglIlGTG~-Na~yie 261 (465)
|.++.+..|+++ +.++|..+|++++-.. ..+..++-+=+|-|| ..+.+.
T Consensus 176 l~~Aa~~AG~~~--v~li~EPtAAAl~y~~~~~~~~~vlV~D~GGGT~D~Svv~ 227 (450)
T PRK11678 176 LERAAKRAGFKD--VEFQFEPVAAGLDFEATLTEEKRVLVVDIGGGTTDCSMLL 227 (450)
T ss_pred HHHHHHHcCCCE--EEEEcCHHHHHHHhccccCCCCeEEEEEeCCCeEEEEEEE
Confidence 667777678875 7999999999996432 234555555688888 455543
No 187
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=20.10 E-value=98 Score=26.37 Aligned_cols=19 Identities=21% Similarity=0.427 Sum_probs=15.4
Q ss_pred EEEEEeCCceEEEEEEEec
Q 012386 97 FYALDLGGTNFRVLRVQLG 115 (465)
Q Consensus 97 ~LaiDlGGTNlRv~~V~l~ 115 (465)
+.+||+|++++++.+.+.+
T Consensus 1 i~~iDiGs~~~~~~i~~~~ 19 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDG 19 (120)
T ss_dssp EEEEEE-SSSEEEEEEETT
T ss_pred CEEEEcCCCcEEEEEEEeC
Confidence 4789999999999988763
Done!