Query 012386
Match_columns 465
No_of_seqs 200 out of 909
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 08:26:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012386.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012386hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3f9m_A Glucokinase; hexokinase 100.0 6E-106 2E-110 838.5 42.4 413 35-460 15-465 (470)
2 3hm8_A Hexokinase-3; glucose, 100.0 8E-103 3E-107 809.0 40.8 402 40-459 5-440 (445)
3 3o8m_A Hexokinase; rnaseh-like 100.0 2E-101 6E-106 810.0 45.6 413 32-459 18-473 (485)
4 1bdg_A Hexokinase; phosphotran 100.0 1.4E-93 4.9E-98 749.9 44.1 409 34-459 5-450 (451)
5 2yhx_A Hexokinase B; transfera 100.0 6.1E-90 2.1E-94 722.0 44.2 401 38-460 6-447 (457)
6 1cza_N Hexokinase type I; stru 100.0 1.9E-87 6.5E-92 757.0 44.9 409 39-460 468-912 (917)
7 1cza_N Hexokinase type I; stru 100.0 1.5E-77 5.1E-82 676.4 39.8 409 36-459 17-463 (917)
8 3vgl_A Glucokinase; ROK family 100.0 5E-27 1.7E-31 235.8 24.8 284 95-454 2-311 (321)
9 1z05_A Transcriptional regulat 100.0 1.9E-26 6.3E-31 240.6 29.3 328 43-454 58-414 (429)
10 2qm1_A Glucokinase; alpha-beta 100.0 8.1E-27 2.8E-31 233.8 24.8 292 95-454 6-320 (326)
11 1z6r_A MLC protein; transcript 99.9 1E-25 3.4E-30 233.3 29.2 331 43-453 35-391 (406)
12 3r8e_A Hypothetical sugar kina 99.9 2.4E-26 8.3E-31 230.8 23.5 289 92-453 16-317 (321)
13 2hoe_A N-acetylglucosamine kin 99.9 1.3E-25 4.5E-30 230.6 28.1 309 43-454 38-370 (380)
14 3vov_A Glucokinase, hexokinase 99.9 8.5E-26 2.9E-30 225.1 24.2 270 96-454 2-294 (302)
15 4db3_A Glcnac kinase, N-acetyl 99.9 2.3E-25 7.9E-30 224.4 24.3 268 96-453 25-324 (327)
16 4htl_A Beta-glucoside kinase; 99.9 8.7E-25 3E-29 217.2 24.5 266 96-454 5-290 (297)
17 2ap1_A Putative regulator prot 99.9 8E-25 2.7E-29 219.9 21.6 269 95-453 24-324 (327)
18 2yhw_A Bifunctional UDP-N-acet 99.9 5E-24 1.7E-28 215.6 26.0 289 94-455 29-338 (343)
19 3htv_A D-allose kinase, alloki 99.9 6.4E-24 2.2E-28 212.4 21.1 270 93-454 5-298 (310)
20 2aa4_A Mannac kinase, putative 99.9 3.5E-24 1.2E-28 211.3 18.3 264 96-453 2-286 (289)
21 2gup_A ROK family protein; sug 99.9 4.7E-23 1.6E-27 203.6 22.9 265 96-454 5-286 (292)
22 3mcp_A Glucokinase; structural 99.9 5.2E-23 1.8E-27 210.2 21.4 268 93-448 7-310 (366)
23 3epq_A Putative fructokinase; 99.9 2.8E-23 9.5E-28 207.1 17.9 252 96-454 4-288 (302)
24 1sz2_A Glucokinase, glucose ki 99.9 2.9E-22 9.8E-27 202.0 21.6 268 94-454 13-325 (332)
25 2ch5_A NAGK protein; transfera 99.9 9.2E-22 3.2E-26 198.8 21.6 299 96-455 7-324 (347)
26 2q2r_A Glucokinase 1, putative 99.9 5E-22 1.7E-26 203.4 18.9 272 95-454 29-370 (373)
27 1woq_A Inorganic polyphosphate 99.9 5.5E-21 1.9E-25 186.8 19.2 245 91-458 8-264 (267)
28 2e2o_A Hexokinase; acetate and 99.8 3.5E-19 1.2E-23 176.4 15.6 261 96-454 3-286 (299)
29 1saz_A Probable butyrate kinas 99.8 8.1E-19 2.8E-23 180.3 16.2 277 96-454 3-347 (381)
30 3lm2_A Putative kinase; struct 99.8 9E-19 3.1E-23 167.3 8.9 204 93-425 4-208 (226)
31 1zc6_A Probable N-acetylglucos 99.7 1.1E-16 3.7E-21 159.2 16.5 267 96-454 12-292 (305)
32 1zbs_A Hypothetical protein PG 99.7 4.9E-17 1.7E-21 160.8 13.6 270 96-455 1-280 (291)
33 1zxo_A Conserved hypothetical 99.7 2.6E-17 8.8E-22 162.7 9.7 262 96-453 1-276 (291)
34 4ehu_A Activator of 2-hydroxyi 97.8 0.0007 2.4E-08 65.3 16.7 26 96-124 2-27 (276)
35 3ifr_A Carbohydrate kinase, FG 97.8 7E-05 2.4E-09 79.3 10.0 96 93-195 5-107 (508)
36 1hux_A Activator of (R)-2-hydr 97.6 0.0018 6.2E-08 62.7 17.0 27 96-125 4-30 (270)
37 2p3r_A Glycerol kinase; glycer 97.6 0.00018 6.2E-09 76.1 9.8 84 93-183 1-91 (510)
38 4e1j_A Glycerol kinase; struct 97.6 0.00017 6E-09 76.4 9.7 94 95-195 26-127 (520)
39 2dpn_A Glycerol kinase; thermu 97.5 0.00031 1.1E-08 74.0 9.7 92 96-194 3-102 (495)
40 3g25_A Glycerol kinase; IDP007 97.4 0.00035 1.2E-08 73.7 9.4 81 96-183 7-94 (501)
41 2itm_A Xylulose kinase, xylulo 97.4 0.00045 1.5E-08 72.5 10.1 90 96-194 1-97 (484)
42 2w40_A Glycerol kinase, putati 97.4 0.00042 1.4E-08 73.1 9.9 90 96-194 5-106 (503)
43 3h3n_X Glycerol kinase; ATP-bi 97.4 0.00047 1.6E-08 72.8 10.3 83 94-183 4-93 (506)
44 2d4w_A Glycerol kinase; alpha 97.4 0.00043 1.5E-08 73.1 9.8 79 96-183 3-90 (504)
45 2zf5_O Glycerol kinase; hypert 97.4 0.00048 1.6E-08 72.5 9.7 92 96-194 4-102 (497)
46 3ezw_A Glycerol kinase; glycer 97.2 0.00072 2.5E-08 71.7 8.9 78 92-176 1-81 (526)
47 3hz6_A Xylulokinase; xylulose, 97.1 0.002 6.7E-08 68.1 10.9 92 96-195 6-104 (511)
48 3l0q_A Xylulose kinase; xlylul 97.0 0.0014 4.8E-08 69.9 8.6 74 95-175 5-81 (554)
49 3ll3_A Gluconate kinase; xylul 96.9 0.0031 1.1E-07 66.4 9.9 91 95-195 4-101 (504)
50 3jvp_A Ribulokinase; PSI-II, N 96.9 0.002 6.7E-08 69.1 8.3 75 95-176 5-94 (572)
51 2uyt_A Rhamnulokinase; rhamnos 96.7 0.0046 1.6E-07 64.7 9.5 78 95-184 4-93 (489)
52 3i8b_A Xylulose kinase; strain 96.4 0.012 4.1E-07 62.1 10.2 86 95-195 5-95 (515)
53 3h6e_A Carbohydrate kinase, FG 96.3 0.0049 1.7E-07 64.7 6.7 70 96-178 7-78 (482)
54 3bex_A Type III pantothenate k 95.9 0.017 6E-07 55.1 8.0 123 96-263 4-141 (249)
55 3djc_A Type III pantothenate k 93.9 0.1 3.5E-06 50.2 7.1 66 96-179 3-68 (266)
56 2ych_A Competence protein PILM 93.1 2.1 7.2E-05 42.4 15.6 55 206-262 151-210 (377)
57 2ivn_A O-sialoglycoprotein end 92.8 7.9 0.00027 37.9 19.7 136 96-263 2-140 (330)
58 2h3g_X Biosynthetic protein; p 92.6 0.55 1.9E-05 45.1 10.0 50 97-159 2-51 (268)
59 4bc3_A Xylulose kinase; transf 92.5 0.26 9.1E-06 52.0 8.3 33 95-130 10-42 (538)
60 3h1q_A Ethanolamine utilizatio 91.3 2.6 8.7E-05 39.6 13.0 43 209-256 109-151 (272)
61 4gni_A Putative heat shock pro 87.6 2.3 7.8E-05 42.7 10.0 49 207-257 165-218 (409)
62 4ijn_A Acetate kinase, acetoki 87.4 0.35 1.2E-05 49.0 3.7 57 360-425 293-349 (398)
63 3qfu_A 78 kDa glucose-regulate 85.7 2.4 8.2E-05 42.1 8.9 48 207-256 168-218 (394)
64 3i33_A Heat shock-related 70 k 85.6 3 0.0001 41.7 9.6 52 207-260 173-231 (404)
65 3ezw_A Glycerol kinase; glycer 83.1 5.6 0.00019 41.6 10.7 77 365-458 376-452 (526)
66 4a2a_A Cell division protein F 82.1 26 0.0009 35.4 15.0 55 207-263 169-226 (419)
67 4b9q_A Chaperone protein DNAK; 75.8 8.9 0.0003 40.9 9.5 53 206-260 149-205 (605)
68 2p3r_A Glycerol kinase; glycer 74.9 14 0.00047 38.4 10.5 48 402-458 404-451 (510)
69 3ifr_A Carbohydrate kinase, FG 72.6 22 0.00077 36.8 11.4 48 402-458 403-450 (508)
70 3g25_A Glycerol kinase; IDP007 72.2 15 0.00053 37.9 10.1 48 402-458 407-454 (501)
71 3en9_A Glycoprotease, O-sialog 70.7 60 0.0021 33.7 14.3 131 96-262 7-144 (540)
72 2d4w_A Glycerol kinase; alpha 69.7 21 0.00072 36.9 10.4 47 402-457 406-452 (504)
73 3h3n_X Glycerol kinase; ATP-bi 69.1 19 0.00064 37.3 9.8 48 402-458 406-453 (506)
74 2v7y_A Chaperone protein DNAK; 67.7 23 0.00077 36.7 10.1 52 208-261 125-179 (509)
75 3jvp_A Ribulokinase; PSI-II, N 67.0 18 0.00061 38.1 9.3 49 402-458 442-490 (572)
76 3vth_A Hydrogenase maturation 66.8 28 0.00096 38.2 10.9 49 402-456 696-748 (761)
77 1yuw_A Heat shock cognate 71 k 66.6 20 0.00067 37.7 9.5 51 208-260 155-210 (554)
78 3i8b_A Xylulose kinase; strain 66.0 26 0.0009 36.4 10.2 47 402-457 427-473 (515)
79 4e1j_A Glycerol kinase; struct 65.3 23 0.00079 36.8 9.6 46 403-457 429-474 (520)
80 2dpn_A Glycerol kinase; thermu 64.5 22 0.00075 36.6 9.2 46 403-457 402-447 (495)
81 2w40_A Glycerol kinase, putati 63.3 28 0.00097 35.9 9.8 47 403-458 411-457 (503)
82 3ll3_A Gluconate kinase; xylul 62.1 32 0.0011 35.5 10.0 48 402-458 396-443 (504)
83 3nuw_A 2-OXO-3-deoxygalactonat 61.5 9.9 0.00034 36.9 5.5 27 95-125 6-32 (295)
84 3eno_A Putative O-sialoglycopr 61.4 1.2E+02 0.0042 29.4 19.9 130 96-260 7-143 (334)
85 1hjr_A Holliday junction resol 60.2 22 0.00074 31.1 7.0 58 96-159 2-59 (158)
86 2kho_A Heat shock protein 70; 59.7 31 0.0011 36.6 9.5 52 208-261 151-206 (605)
87 3mdq_A Exopolyphosphatase; str 58.7 35 0.0012 33.0 9.0 62 96-157 5-68 (315)
88 2zf5_O Glycerol kinase; hypert 57.9 30 0.001 35.6 8.8 47 403-458 397-443 (497)
89 3d2f_A Heat shock protein homo 57.6 22 0.00076 38.4 8.0 126 97-255 4-208 (675)
90 3t69_A Putative 2-dehydro-3-de 55.9 8.8 0.0003 37.8 4.0 53 95-154 7-59 (330)
91 4bc3_A Xylulose kinase; transf 54.7 34 0.0012 35.6 8.7 46 403-457 438-483 (538)
92 1nu0_A Hypothetical protein YQ 54.6 63 0.0021 27.4 8.8 22 95-116 3-24 (138)
93 3l0q_A Xylulose kinase; xlylul 54.1 47 0.0016 34.7 9.7 48 402-458 445-492 (554)
94 3ttc_A HYPF, transcriptional r 53.8 18 0.00062 39.0 6.4 46 402-455 602-651 (657)
95 2itm_A Xylulose kinase, xylulo 53.4 40 0.0014 34.5 8.9 46 403-457 390-436 (484)
96 3h6e_A Carbohydrate kinase, FG 53.2 18 0.00063 37.3 6.2 62 377-456 374-436 (482)
97 3hi0_A Putative exopolyphospha 53.0 30 0.001 36.0 7.8 76 80-157 2-79 (508)
98 3r9p_A ACKA; ssgcid, seattle s 52.6 6.4 0.00022 39.7 2.5 26 244-269 195-220 (391)
99 1t6c_A Exopolyphosphatase; alp 52.4 35 0.0012 33.0 7.8 62 96-157 13-76 (315)
100 2uyt_A Rhamnulokinase; rhamnos 51.2 60 0.002 33.1 9.8 74 366-457 368-441 (489)
101 4ep4_A Crossover junction endo 48.1 1.1E+02 0.0037 26.8 9.5 59 96-159 2-63 (166)
102 2i7n_A Pantothenate kinase 1; 47.6 62 0.0021 32.1 8.8 79 359-453 279-358 (360)
103 2ews_A Pantothenate kinase; PA 43.5 15 0.0005 35.5 3.3 72 360-452 211-285 (287)
104 3hz6_A Xylulokinase; xylulose, 41.3 69 0.0023 33.1 8.4 41 219-260 230-272 (511)
105 3cet_A Conserved archaeal prot 39.6 19 0.00064 35.5 3.5 61 338-408 225-285 (334)
106 3cer_A Possible exopolyphospha 39.5 59 0.002 31.8 7.2 63 96-158 17-82 (343)
107 2ews_A Pantothenate kinase; PA 37.9 2.1E+02 0.0071 27.3 10.6 19 94-112 19-37 (287)
108 1u6z_A Exopolyphosphatase; alp 37.2 73 0.0025 33.0 7.8 63 96-158 12-76 (513)
109 2fsj_A Hypothetical protein TA 35.6 46 0.0016 32.4 5.7 51 93-152 188-238 (346)
110 3s5p_A Ribose 5-phosphate isom 34.6 17 0.0006 32.0 2.1 60 203-262 31-97 (166)
111 3tai_A DNA double-strand break 33.9 41 0.0014 34.2 4.8 49 49-101 23-71 (471)
112 1vhx_A Putative holliday junct 33.7 35 0.0012 29.4 3.9 22 96-117 4-25 (150)
113 4g9i_A Hydrogenase maturation 32.3 44 0.0015 36.7 5.3 50 402-457 708-761 (772)
114 3aap_A Ectonucleoside triphosp 29.0 1.8E+02 0.0063 28.4 8.8 61 94-156 2-64 (353)
115 3zyy_X Iron-sulfur cluster bin 29.0 1E+02 0.0036 32.9 7.3 37 227-264 353-389 (631)
116 3ph3_A Ribose-5-phosphate isom 28.4 11 0.00038 33.4 -0.2 60 203-262 30-96 (169)
117 3he8_A Ribose-5-phosphate isom 28.2 11 0.00039 32.7 -0.2 60 203-262 10-76 (149)
118 3qfu_A 78 kDa glucose-regulate 26.6 2.6E+02 0.0088 26.9 9.5 29 89-117 200-228 (394)
119 1dkg_D Molecular chaperone DNA 24.2 33 0.0011 33.6 2.3 52 208-261 151-206 (383)
120 1o1x_A Ribose-5-phosphate isom 23.5 23 0.00079 30.9 0.9 61 202-262 21-88 (155)
121 3qb0_A Actin-related protein 4 22.2 81 0.0028 32.7 4.8 49 403-455 417-471 (498)
122 4em8_A Ribose 5-phosphate isom 22.0 26 0.00088 30.4 0.9 59 203-262 17-82 (148)
123 1mul_A NS2, HU-2, DNA binding 21.9 1.4E+02 0.0048 22.8 5.2 35 39-73 5-39 (90)
124 1jce_A ROD shape-determining p 21.5 52 0.0018 31.6 3.1 16 96-111 4-19 (344)
125 1p71_A DNA-binding protein HU; 20.9 1.4E+02 0.0048 23.0 5.0 35 39-73 5-39 (94)
126 3rhi_A DNA-binding protein HU; 20.6 1.3E+02 0.0046 23.2 4.9 35 39-73 8-42 (93)
127 1b8z_A Protein (histonelike pr 20.5 1.5E+02 0.005 22.7 5.0 35 39-73 5-39 (90)
128 2iir_A Acetate kinase; transfe 20.4 2.3E+02 0.0077 28.5 7.5 46 367-425 303-348 (403)
No 1
>3f9m_A Glucokinase; hexokinase IV, ATP-binding, diabetes mellitus, mutation, glycolysis, nucleotide-binding, transfera; HET: GLC MRK; 1.50A {Homo sapiens} PDB: 3fgu_A* 3id8_A* 3idh_A* 3vev_A* 3vf6_A* 3qic_A* 3s41_A* 4dhy_A* 4dch_A* 3vey_A* 1v4s_A* 3a0i_X* 3fr0_A* 3goi_A* 3imx_A* 3h1v_X* 1v4t_A*
Probab=100.00 E-value=5.9e-106 Score=838.46 Aligned_cols=413 Identities=33% Similarity=0.559 Sum_probs=372.7
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCCC--CCCcceeccccccCCCCCcceeEEEEEeCCceEEEEEE
Q 012386 35 ARAVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASEG--GSKLKMLISYVDNLPTGDEKGLFYALDLGGTNFRVLRV 112 (465)
Q Consensus 35 ~~~~~~l~~~~~~~~~~~~~L~~i~~~~~~em~~gL~~~~--~s~~~Mlpt~v~~lP~G~E~G~~LaiDlGGTNlRv~~V 112 (465)
+.+.+.++++.++|.++.++|++|+++|..||++||++++ +|+++||||||+++|+|+|+|.|||||||||||||++|
T Consensus 15 ~~~~~~~~~~~~~f~l~~~~L~~i~~~f~~em~~GL~~~~~~~s~~~MlPTyV~~lP~G~E~G~fLAlDlGGTNfRV~~V 94 (470)
T 3f9m_A 15 GMKKEKVEQILAEFQLQEEDLKKVMRRMQKEMDRGLRLETHEEASVKMLPTYVRSTPEGSEVGDFLSLDLGGTNFRVMLV 94 (470)
T ss_dssp HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHHHSTTTTTTCSSCCEEEEEESSCCCCCCEEEEEEEESSSEEEEEEE
T ss_pred hhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcccCCCCCCcccccCccccCCCCCcceEEEEEEecCceEEEEEE
Confidence 3455667777888889999999999999999999999763 48899999999999999999999999999999999999
Q ss_pred EecCCc--ceeEEEEeeeeecCCCcccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCcceeeeeeecccccccCCceEE
Q 012386 113 QLGGRE--GRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSFPVRQTSIASGDL 190 (465)
Q Consensus 113 ~l~g~~--~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG~tfSfPv~q~~i~~g~L 190 (465)
+|.|++ .+.++..+++|+||+++|.+++++||||||+||.+|+++++.. ++.+++|||||||++|+++++|+|
T Consensus 95 ~L~g~~~~~~~~~~~~~~~~Ip~~l~~gt~~eLFd~IA~~i~~fl~~~~~~-----~~~lpLGfTFSFP~~Q~sl~~g~L 169 (470)
T 3f9m_A 95 KVGEGEEGQWSVKTKHQMYSIPEDAMTGTAEMLFDYISECISDFLDKHQMK-----HKKLPLGFTFSFPVRHEDIDKGIL 169 (470)
T ss_dssp EEEC----CEEEEEEEEEEECCHHHHSSBHHHHHHHHHHHHHHHHHHTTCS-----SSCCEEEEEECSCEEEEETTEEEE
T ss_pred EECCCCCCcceEEEEEEeecCChHhccCCHHHHHHHHHHHHHHHHhhcccc-----ccccceEEEEeccccccCCCceEE
Confidence 998764 2355556678999999999999999999999999999987642 468999999999999999999999
Q ss_pred eccCCccccCCCCCCcHHHHHHHHHHHcC-CCeeEEEEEechHHHhhcccccCCceEEEEEEccccceeEEccCCCCccc
Q 012386 191 IKWTKGFSIEDTVGEDVVGELTKAMERIG-LDMRVAALVNDTIGTLAGGRYHNKDAIAAVILGTGTNAAYVERAHAIPKW 269 (465)
Q Consensus 191 i~wtKgF~~~~~~g~dv~~~L~~al~~~g-l~v~v~alvNDtvatlla~~y~~~~~~iglIlGTG~Na~yie~~~~i~k~ 269 (465)
++|||||++++++|+||+++|+++++|+| +||+|+||+|||||||++++|.+++|.||+|+|||||+||+|+.++|++|
T Consensus 170 i~WTKGF~~~~v~G~DVv~lL~~al~r~g~~~v~v~AlvNDTVgTL~s~aY~~~~~~iGlI~GTGtNa~Y~E~~~~I~k~ 249 (470)
T 3f9m_A 170 LNWTKGFKASGAEGNNVVGLLRDAIKRRGDFEMDVVAMVNDTVATMISCYYEDHQCEVGMIVGTGCNACYMEEMQNVELV 249 (470)
T ss_dssp CCCCTTCCCBTCBTSBHHHHHHHHHHHHCSCCCEEEEEECHHHHHHHHHHTTCTTEEEEEEESSSEEEEEEEEGGGCTTS
T ss_pred EeccccccCCCcCCccHHHHHHHHHHhcCCCCCcEEEEEEcCHHHHHhcccCCCCceEEEEEecCCceEEeeeccccccc
Confidence 99999999999999999999999999998 79999999999999999999999999999999999999999999999988
Q ss_pred CCC------------------C---------------CCCCceeeeehhccccHHHHHHHHHHHHhhcccCCCCCCCCCC
Q 012386 270 HGL------------------L---------------PKSGEMIFEKIISGMYLGEIVRRVLCRMAEEANFFGDTVPPKL 316 (465)
Q Consensus 270 ~~~------------------~---------------~~~g~~~fEkm~SG~YLGEi~R~~l~~~~~~~~lf~~~~~~~l 316 (465)
++. + +++|.++||||+||||||||+|++|+++.+++.||++..|++|
T Consensus 250 ~~~~~~miINtEwG~Fg~~~~l~~~~T~~D~~lD~~S~nPG~Q~fEKmiSG~YLGEivRliL~~l~~~~~lf~~~~~~~L 329 (470)
T 3f9m_A 250 EGDEGRMCVNTEWGAFGDSGELDEFLLEYDRLVDESSANPGQQLYEKLIGGKYMGELVRLVLLRLVDENLLFHGEASEQL 329 (470)
T ss_dssp SCCSSEEEEECCGGGTTTTSTTGGGCCHHHHHHHHHSSSTTSCHHHHTTCHHHHHHHHHHHHHHHHHTTCSGGGCCCTTT
T ss_pred cCCCCcEEEeechhhcCCCcccCCCCCcccHHHhhcCCCCCceeeccccchhhHHHHHHHHHHHHHHhCcCcCCCCcHHh
Confidence 641 0 2467779999999999999999999999999999998889999
Q ss_pred CCCCccCchhhhhcccCCCcCHHHHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCC
Q 012386 317 KIPFILRTPHMSAMHHDTSPDLRVVGKKLKDILEISNTSLKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDG 396 (465)
Q Consensus 317 ~~~~~l~t~~ls~i~~d~s~~~~~~~~il~~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~aagiaaii~~~~~~~~~~~ 396 (465)
.+||+|+|++||.|+.|++++ ..+..++++ +++. ++.+|++.+++||++|.+|||+|+||+|+||+++++.... .
T Consensus 330 ~~~~~l~T~~ls~ie~d~~~~-~~~~~il~~-l~~~-~~~~d~~~vr~i~~~V~~RaA~L~Aa~iaail~k~~~~~~--~ 404 (470)
T 3f9m_A 330 RTRGAFETRFVSQVESDTGDR-KQIYNILST-LGLR-PSTTDCDIVRRACESVSTRAAHMCSAGLAGVINRMRESRS--E 404 (470)
T ss_dssp TSTTCSCHHHHHHHHTCCSSC-HHHHHHHHH-TTCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS--C
T ss_pred cCCCCcCchHHhhhccCCCch-HHHHHHHHh-cCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--c
Confidence 999999999999999999888 888899876 8885 5569999999999999999999999999999999975211 1
Q ss_pred CCceEEEEEecceeccchhHHHHHHHHHHHHhccCCCccEEEEEeCChhHHHHHHHHHHhcccc
Q 012386 397 EKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHSQYL 460 (465)
Q Consensus 397 ~~~~~~V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l~~a~Dgs~iGAAl~Aa~~~~~~ 460 (465)
...+++|++|||+|++||.|+++++++++++++ .++|+|++++|||++|||++||++++.+
T Consensus 405 ~~~~~~VgvDGsv~~~yp~f~~~~~~~l~~l~~---~~~v~l~~a~DGSg~GAAliAa~a~~~~ 465 (470)
T 3f9m_A 405 DVMRITVGVDGSVYKLHPSFKERFHASVRRLTP---SCEITFIESEEGSGRGAALVSAVACKKA 465 (470)
T ss_dssp SSEEEEEEEECHHHHHCTTHHHHHHHHHHHHCT---TEEEEEEECSSHHHHHHHHHHHHHTC--
T ss_pred cccceEEEEeccHHHhCchHHHHHHHHHHHHcC---CCeEEEEEcCCCcHHHHHHHHHHHHHHH
Confidence 225689999999999999999999999999984 4689999999999999999999998753
No 2
>3hm8_A Hexokinase-3; glucose, glucose-6-phosphate, non-protein kinase, structural genomics consortium, SGC, A enzyme, ATP-binding, glycolysis; HET: GLC BG6; 2.80A {Homo sapiens}
Probab=100.00 E-value=8.1e-103 Score=808.96 Aligned_cols=402 Identities=37% Similarity=0.578 Sum_probs=365.5
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCCCCCCcceeccccccCCCCCcceeEEEEEeCCceEEEEEEEecCCcc
Q 012386 40 ILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASEGGSKLKMLISYVDNLPTGDEKGLFYALDLGGTNFRVLRVQLGGREG 119 (465)
Q Consensus 40 ~l~~~~~~~~~~~~~L~~i~~~~~~em~~gL~~~~~s~~~Mlpt~v~~lP~G~E~G~~LaiDlGGTNlRv~~V~l~g~~~ 119 (465)
.++++.++|.++.++|++|+++|..||++||++++ |+++||||||+++|+|+|+|.|||||||||||||++|++.|+
T Consensus 5 ~~~~~~~~f~l~~~~L~~i~~~f~~em~~GL~~~~-s~~~MlPtyv~~~P~G~E~G~~LAlDlGGTn~RV~~V~l~g~-- 81 (445)
T 3hm8_A 5 LLEETLAPFRLNHDQLAAVQAQMRKAMAKGLRGEA-SSLRMLPTFVRATPDGSERGDFLALDLGGTNFRVLLVRVTTG-- 81 (445)
T ss_dssp HHHHHHGGGSCCHHHHHHHHHHHHHHHHHHHHTSC-CSSCCEECCCCSSCCSCCCEEEEEEEESSSSEEEEEEEESSS--
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhccCC-CCCccCCCCCCCCCCCceeeEEEEEEecCCeEEEEEEEECCc--
Confidence 45566667779999999999999999999999875 889999999999999999999999999999999999999774
Q ss_pred eeEEEEeeeeecCCCcccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCcceeeeeeecccccccCCceEEeccCCcccc
Q 012386 120 RVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSFPVRQTSIASGDLIKWTKGFSI 199 (465)
Q Consensus 120 ~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG~tfSfPv~q~~i~~g~Li~wtKgF~~ 199 (465)
+...+++|+||+++|.+++++||||||+||.+|+++++.. ++.+|+|||||||++|+++++|+|++|||||++
T Consensus 82 --~~~~~~~~~ip~~~~~g~~~~LFd~Ia~~i~~fl~~~~~~-----~~~lplGftFSFP~~Q~sl~~g~Li~wtKGF~~ 154 (445)
T 3hm8_A 82 --VQITSEIYSIPETVAQGSGQQLFDHIVDCIVDFQQKQGLS-----GQSLPLGFTFSFPCRQLGLDQGILLNWTKGFKA 154 (445)
T ss_dssp --EEEEEEEECCCHHHHTSBHHHHHHHHHHHHHHHHHHHTCT-----TCCCCEEEEECSCEECSSTTCCEECCCCTTCCC
T ss_pred --eEEEEEEeccCccccCCCHHHHHHHHHHHHHHHHHHhCcc-----cccCcceEEEeeeeEeccCCceEEEEeeccccC
Confidence 3334458999999999999999999999999999987642 468999999999999999999999999999999
Q ss_pred CCCCCCcHHHHHHHHHHHc-CCCeeEEEEEechHHHhhcccccCCceEEEEEEccccceeEEccCCCCcccCCC------
Q 012386 200 EDTVGEDVVGELTKAMERI-GLDMRVAALVNDTIGTLAGGRYHNKDAIAAVILGTGTNAAYVERAHAIPKWHGL------ 272 (465)
Q Consensus 200 ~~~~g~dv~~~L~~al~~~-gl~v~v~alvNDtvatlla~~y~~~~~~iglIlGTG~Na~yie~~~~i~k~~~~------ 272 (465)
++++|+||+++|+++++|+ ++||+|+||+|||||||++++|.++++.||+|+|||+|+||+|+.++|+++++.
T Consensus 155 ~~~~G~dv~~lL~~al~r~~~~~v~vvAivNDTvgTLla~~y~~~~~~iglIlGTGtNa~y~e~~~~i~k~~~~~~~miI 234 (445)
T 3hm8_A 155 SDCEGQDVVSLLREAITRRQAVELNVVAIVNDTVGTMMSCGYEDPRCEIGLIVGTGTNACYMEELRNVAGVPGDSGRMCI 234 (445)
T ss_dssp BTCTTSBHHHHHHHHHHHTTCSCCCSEEEECHHHHHHHHHHTTCTTEEEEEEESSSEEEEEEEEGGGCTTSCCCSSEEEE
T ss_pred CCCCCCcHHHHHHHHHHhcCCCCcceEEEecCcHHHHHhhccCCCCceEEEEEeCCceEEEEEecccccccCCCCCcEEE
Confidence 9999999999999999997 589999999999999999999999999999999999999999999998887541
Q ss_pred ---------------------------CCCCCceeeeehhccccHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccCch
Q 012386 273 ---------------------------LPKSGEMIFEKIISGMYLGEIVRRVLCRMAEEANFFGDTVPPKLKIPFILRTP 325 (465)
Q Consensus 273 ---------------------------~~~~g~~~fEkm~SG~YLGEi~R~~l~~~~~~~~lf~~~~~~~l~~~~~l~t~ 325 (465)
.+++|.++||||+||+|||||+|++++++.+++.||++..|++|.+||+|+|+
T Consensus 235 NtEwG~Fg~~~~l~~~~T~~D~~lD~~S~~PG~q~fEKmiSG~YLGEivRliL~~l~~~~~lf~~~~~~~L~~~~~l~T~ 314 (445)
T 3hm8_A 235 NMEWGAFGDDGSLAMLSTRFDASVDQASINPGKQRFEKMISGMYLGEIVRHILLHLTSLGVLFRGQQIQRLQTRDIFKTK 314 (445)
T ss_dssp ECCGGGTTTTTTTTTTCCHHHHHHHHTSSSTTSSTTGGGTSHHHHHHHHHHHHHHHHHHTSSGGGCCCGGGGSTTCSCHH
T ss_pred EcchhhcCCCCCCcCCCCccchHHhcCCCCCCceEeeeecchhhHHHHHHHHHHHHHHcCCCCCCCCcHHHcCCCCCCcH
Confidence 02467779999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCCCcCHHHHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEE
Q 012386 326 HMSAMHHDTSPDLRVVGKKLKDILEISNTSLKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIAL 405 (465)
Q Consensus 326 ~ls~i~~d~s~~~~~~~~il~~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~aagiaaii~~~~~~~~~~~~~~~~~V~i 405 (465)
+||.|+.|++ ++..+..+|++ +++ .++.+|++.+++||++|.+|||+|+|++|+||++++++... ....+++|++
T Consensus 315 ~ls~ie~D~~-~~~~~~~~l~~-l~~-~~t~~d~~~vr~i~~~V~~RaA~L~Aa~iaai~~k~~~~~~--~~~~~~~Vgv 389 (445)
T 3hm8_A 315 FLSEIESDSL-ALRQVRAILED-LGL-PLTSDDALMVLEVCQAVSQRAAQLCGAGVAAVVEKIRENRG--LEELAVSVGV 389 (445)
T ss_dssp HHHHHTCTTC-CHHHHHHHHHT-TTC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CSSEEEEEEE
T ss_pred HHHHHhcCCc-hHHHHHHHHHH-hCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--ccccCcEEEE
Confidence 9999999865 57778889976 899 78999999999999999999999999999999999964210 1124789999
Q ss_pred ecceeccchhHHHHHHHHHHHHhccCCCccEEEEEeCChhHHHHHHHHHHhccc
Q 012386 406 DGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHSQY 459 (465)
Q Consensus 406 dGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l~~a~Dgs~iGAAl~Aa~~~~~ 459 (465)
|||||++||.|+++++++++++.+. ++|+|.+++||||+|||++||+++|.
T Consensus 390 DGsvy~~~P~f~~~l~~~l~~l~~~---~~v~~~~s~DGSg~GAAl~AA~a~~~ 440 (445)
T 3hm8_A 390 DGTLYKLHPRFSSLVAATVRELAPR---CVVTFLQSEDGSGKGAALVTAVACRL 440 (445)
T ss_dssp ECHHHHHCTTHHHHHHHHHHHHCTT---EEEEEEECSSCHHHHHHHHHHHHHHH
T ss_pred eceehccChhHHHHHHHHHHHhCCC---CcEEEEECCCCchHHHHHHHHHHHHH
Confidence 9999999999999999999998763 58999999999999999999999865
No 3
>3o8m_A Hexokinase; rnaseh-like fold, glycolysis, glucose repression binding, MIG1 binding, transferase; HET: GLC BGC; 1.42A {Kluyveromyces lactis} PDB: 3o1b_A 3o08_A* 3o1w_A* 3o5b_A* 3o4w_A 3o80_A* 3o6w_A* 1ig8_A 3b8a_X*
Probab=100.00 E-value=1.9e-101 Score=810.03 Aligned_cols=413 Identities=35% Similarity=0.577 Sum_probs=380.8
Q ss_pred hhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCCCCCCcceeccccccCCCCCcceeEEEEEeCCceEEEEE
Q 012386 32 GRWARAVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASEGGSKLKMLISYVDNLPTGDEKGLFYALDLGGTNFRVLR 111 (465)
Q Consensus 32 ~~~~~~~~~l~~~~~~~~~~~~~L~~i~~~~~~em~~gL~~~~~s~~~Mlpt~v~~lP~G~E~G~~LaiDlGGTNlRv~~ 111 (465)
+.+.++.+.+++++++|.+|.++|++|+++|..||++||++++ ++++||||||+++|+|+|+|+|||||||||||||++
T Consensus 18 ~~~~~~~~~~~~~~~~f~~~~~~L~~i~~~f~~em~~GL~~~~-~~~~MlPt~V~~lP~G~E~G~~LalDlGGTn~Rv~~ 96 (485)
T 3o8m_A 18 DVPANLMEQIHGLETLFTVSSEKMRSIVKHFISELDKGLSKKG-GNIPMIPGWVVEYPTGKETGDFLALDLGGTNLRVVL 96 (485)
T ss_dssp TSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHSSSC-CSSCCEECCCCSCCCSCCEEEEEEEEESSSEEEEEE
T ss_pred cCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhccCC-CCCcccCCCCCCCCCCCcceEEEEEEecCCeEEEEE
Confidence 3556788899999999999999999999999999999999865 789999999999999999999999999999999999
Q ss_pred EEecCCcceeEEEEeeeeecCCCcccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCcceeeeeeecccccccCCceEEe
Q 012386 112 VQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSFPVRQTSIASGDLI 191 (465)
Q Consensus 112 V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG~tfSfPv~q~~i~~g~Li 191 (465)
|+++|++. .....++|+||++++.+++++||||||+||.+|+++++.+. ..+.+++|||||||++|+++++|+|+
T Consensus 97 V~l~g~~~--~~~~~~~~~Ip~~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~---~~~~l~lGftfSfP~~q~~i~~g~li 171 (485)
T 3o8m_A 97 VKLGGNHD--FDTTQNKYRLPDHLRTGTSEQLWSFIAKCLKEFVDEWYPDG---VSEPLPLGFTFSYPASQKKINSGVLQ 171 (485)
T ss_dssp EEEESSSC--EEEEEEEEECCTTGGGSBHHHHHHHHHHHHHHHHHHHCTTC---CSSCEEEEEEECSCEECSBTTCCEEC
T ss_pred EEECCCCc--eEEEEEEEecCchhccCCHHHHHHHHHHHHHHHHHHhcccc---cccccceEEEEeeeEEEcccCCEEEe
Confidence 99988642 22334589999999988899999999999999999876432 14679999999999999999999999
Q ss_pred ccCCccccCCCCCCcHHHHHHHHHHHcCCCeeEEEEEechHHHhhcccccCCceEEEEEEccccceeEEccCCCCcccCC
Q 012386 192 KWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHNKDAIAAVILGTGTNAAYVERAHAIPKWHG 271 (465)
Q Consensus 192 ~wtKgF~~~~~~g~dv~~~L~~al~~~gl~v~v~alvNDtvatlla~~y~~~~~~iglIlGTG~Na~yie~~~~i~k~~~ 271 (465)
+|||||++++++|+||+++|+++++|+|+||+|+||+|||||||++++|.++++.||+|+|||+|+||+|+.++|+|+++
T Consensus 172 ~wtKGF~i~~~~G~dv~~~L~~al~r~gl~v~v~aivNDtv~tll~~~y~~~~~~iglIlGTG~N~~y~e~~~~i~k~~~ 251 (485)
T 3o8m_A 172 RWTKGFDIEGVEGHDVVPMLQEQIEKLNIPINVVALINDTTGTLVASLYTDPQTKMGIIIGTGVNGAYYDVVSGIEKLEG 251 (485)
T ss_dssp CCCTTCCCBTCTTSBHHHHHHHHHHHTTCCEEEEEEECHHHHHHHHHHHHCTTEEEEEEESSSEEEEEEEEGGGCGGGTT
T ss_pred eccccccCCCcCCccHHHHHHHHHHhcCCCceEEEEEEcHHHHHHHHhhCCCCcEEEEEEecCcceEEEeeccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998862
Q ss_pred ----CC-----------------------------------CCCCceeeeehhccccHHHHHHHHHHHHhhcccCCCCCC
Q 012386 272 ----LL-----------------------------------PKSGEMIFEKIISGMYLGEIVRRVLCRMAEEANFFGDTV 312 (465)
Q Consensus 272 ----~~-----------------------------------~~~g~~~fEkm~SG~YLGEi~R~~l~~~~~~~~lf~~~~ 312 (465)
.. +++|.++||||+||||||||+|++|+++.+++.||++..
T Consensus 252 ~~~~~~~~~~~miINtEwG~F~~~~~~lp~T~~D~~lD~~S~nPG~Q~fEKmiSG~YLGEivRlil~~l~~~~~lF~~~~ 331 (485)
T 3o8m_A 252 LLPEDIGPDSPMAINCEYGSFDNEHLVLPRTKYDVIIDEESPRPGQQAFEKMTSGYYLGEIMRLVLLDLYDSGFIFKDQD 331 (485)
T ss_dssp TCCTTSCTTCEEEEECCGGGTTTTCSSSCCCHHHHHHHHHSSSTTSCHHHHHHSTTTHHHHHHHHHHHHHHTTSSSTTSC
T ss_pred cccccCCCCCcEEEEcccccCCCCcccCCCCchhhHHhhcCCCCCceeeccccccchHHHHHHHHHHHHHHcCcccCCCC
Confidence 11 134556999999999999999999999999999999999
Q ss_pred CCCCCCCCccCchhhhhcccCCCcCHHHHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 012386 313 PPKLKIPFILRTPHMSAMHHDTSPDLRVVGKKLKDILEISNTSLKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRDT 392 (465)
Q Consensus 313 ~~~l~~~~~l~t~~ls~i~~d~s~~~~~~~~il~~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~aagiaaii~~~~~~~ 392 (465)
|++|.+||+|+|++||.|+.|+++++..+..+|++.|+++ ++.+|++.+++||++|.+|||+|+|++|+||++++++
T Consensus 332 ~~~L~~~~~l~T~~ls~i~~d~~~~l~~~~~~l~~~l~~~-~t~~d~~~vr~i~~~V~~RAA~L~Aa~iaail~~~~~-- 408 (485)
T 3o8m_A 332 ISKLKEAYVMDTSYPSKIEDDPFENLEDTDDLFKTNLNIE-TTVVERKLIRKLAELVGTRAARLTVCGVSAICDKRGY-- 408 (485)
T ss_dssp CGGGGSTTCSCTHHHHHHHHCCCTTCHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred cHHhcCCCCcCcHHHHHHHcCCcchHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--
Confidence 9999999999999999999999999999999999999995 8889999999999999999999999999999999998
Q ss_pred cCCCCCceEEEEEecceeccchhHHHHHHHHHHHHhccCC----CccEEEEEeCChhHHHHHHHHHHhccc
Q 012386 393 VRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEV----SETVVIEHSNDGSGIGAALLAASHSQY 459 (465)
Q Consensus 393 ~~~~~~~~~~V~idGsv~~~~~~f~~~l~~~l~~~~~~~~----~~~v~l~~a~Dgs~iGAAl~Aa~~~~~ 459 (465)
+.++|++|||+|++||.|+++++++++++++... .++|+|.+++|||++|||++||++++.
T Consensus 409 ------~~~~VgvdGSv~~~~P~f~~~~~~~l~~ll~~~~~~~~~~~v~l~~a~DGSg~GAAliAa~a~~~ 473 (485)
T 3o8m_A 409 ------KTAHIAADGSVFNRYPGYKEKAAQALKDIYNWDVEKMEDHPIQLVAAEDGSGVGAAIIACLTQKR 473 (485)
T ss_dssp ------SSEEEEEESHHHHHSTTHHHHHHHHHHHHHTCCCCSGGGCSEEEEECCCTTTHHHHHHHHHHHHH
T ss_pred ------CceEEEEecChhccCccHHHHHHHHHHHHhccccccCCCceEEEEEcCCChHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999987432 468999999999999999999999865
No 4
>1bdg_A Hexokinase; phosphotransferase; HET: GLC; 2.60A {Schistosoma mansoni} SCOP: c.55.1.3 c.55.1.3
Probab=100.00 E-value=1.4e-93 Score=749.86 Aligned_cols=409 Identities=34% Similarity=0.569 Sum_probs=372.2
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcC--CCCCCcceeccccccCCCCCcceeEEEEEeCCceEEEEE
Q 012386 34 WARAVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLAS--EGGSKLKMLISYVDNLPTGDEKGLFYALDLGGTNFRVLR 111 (465)
Q Consensus 34 ~~~~~~~l~~~~~~~~~~~~~L~~i~~~~~~em~~gL~~--~~~s~~~Mlpt~v~~lP~G~E~G~~LaiDlGGTNlRv~~ 111 (465)
.+.+.+.+++|+++|.++.++|++|+++|..||++||++ ++.|+++||||||+++|+|+|+|+|||||||||||||++
T Consensus 5 ~~~~~~~~~~~~~~f~~~~~~l~~i~~~~~~em~~gL~~~~~~~s~~~mlpt~v~~~P~G~E~G~~lalDlGGTn~Rv~~ 84 (451)
T 1bdg_A 5 DQQLFEKVVEILKPFDLSVVDYEEICDRMGESMRLGLQKSTNEKSSIKMFPSYVTKTPNGTETGNFLALDLGGTNYRVLS 84 (451)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHHHSHHHHTTCSCCCEECCCCSCCCSCCCEEEEEEEESSSSEEEEE
T ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccccCCCCCCCccceEEEEEeCCCeEEEEE
Confidence 345667889999999999999999999999999999984 335899999999999999999999999999999999999
Q ss_pred EEecC-CcceeEEEEeeeeecCCCcccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCcceeeeeeecccccccCCceEE
Q 012386 112 VQLGG-REGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSFPVRQTSIASGDL 190 (465)
Q Consensus 112 V~l~g-~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG~tfSfPv~q~~i~~g~L 190 (465)
|+++| ++. .....++|+||++++.+++++||||||+||++|+++++.. .+.+++|||||||++|+++++|+|
T Consensus 85 V~l~G~~~~--~~i~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~~l~~~~~~-----~~~~~lG~tfsfPv~q~~~~~G~l 157 (451)
T 1bdg_A 85 VTLEGKGKS--PRIQERTYCIPAEKMSGSGTELFKYIAETLADFLENNGMK-----DKKFDLGFTFSFPCVQKGLTHATL 157 (451)
T ss_dssp EEECC-CCC--CEEEEEEECCCTTTTTSBHHHHHHHHHHHHHHHHHHTTCC-----SSCEEEEEEECSCEEEETTTEEEE
T ss_pred EecCCCCcc--eEEEEEEEecCCcccCCCHHHHHHHHHHHHHHHHHhcCCC-----ccccceEEEEeeEeccccCCCeEE
Confidence 99988 432 2222358999999888999999999999999999987642 346999999999999999999999
Q ss_pred eccCCccccCCCCCCcHHHHHHHHHHHcCCCeeEEEEEechHHHhhcccccCCceEEEEEEccccceeEEccCCCCcccC
Q 012386 191 IKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHNKDAIAAVILGTGTNAAYVERAHAIPKWH 270 (465)
Q Consensus 191 i~wtKgF~~~~~~g~dv~~~L~~al~~~gl~v~v~alvNDtvatlla~~y~~~~~~iglIlGTG~Na~yie~~~~i~k~~ 270 (465)
++|||||++++++|+||+++|+++++|+|+||+|++|+||||||+++++|.++++.||+|+|||+|+||+++++.|+|++
T Consensus 158 ~~wtKgf~~~~~~g~dv~~~L~~al~r~~l~v~v~al~NDtv~tlla~~y~~~~~~iglIlGTG~na~yve~~~~i~~~~ 237 (451)
T 1bdg_A 158 VRWTKGFSADGVEGHNVAELLQTELDKRELNVKCVAVVNDTVGTLASCALEDPKCAVGLIVGTGTNVAYIEDSSKVELMD 237 (451)
T ss_dssp CCCCTTCCCBTCTTSBHHHHHHHHHHTTTCCEEEEEEECHHHHHHHHHHTTCTTEEEEEEESSSEEEEEEEETTTCGGGC
T ss_pred eccccccCCCCCCCCcHHHHHHHHHHHcCCCcceEEEEEchHHHHHHhcccCCCcEEEEEEeCCcceEEEEcCccccCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred CC-------------C--------C-------------CCCceeeeehhccccHHHHHHHHHHHHhhcccCCCCCCCCCC
Q 012386 271 GL-------------L--------P-------------KSGEMIFEKIISGMYLGEIVRRVLCRMAEEANFFGDTVPPKL 316 (465)
Q Consensus 271 ~~-------------~--------~-------------~~g~~~fEkm~SG~YLGEi~R~~l~~~~~~~~lf~~~~~~~l 316 (465)
+. + | ++|.+|||||+||+|||||+|+++.++.+++.+|.+..|+.|
T Consensus 238 g~~~g~m~In~EwG~f~~~~~~~~p~t~~D~~lD~~s~~pg~q~~Ek~~SG~yLgel~R~~l~~~~~~~~lf~~~~~~~l 317 (451)
T 1bdg_A 238 GVKEPEVVINTEWGAFGEKGELDCWRTQFDKSMDIDSLHPGKQLYEKMVSGMYLGELVRHIIVYLVEQKILFRGDLPERL 317 (451)
T ss_dssp SCSSSEEEEECCGGGTTTTSTTTTTCCHHHHHHHHTSSSTTSCTTHHHHSHHHHHHHHHHHHHHHHHTTSSGGGCCCSGG
T ss_pred CCccCcEEEecCcccCCCcccccCCCCcchhhhhhcCCCCCcccchhhhhhhHHHHHHHHHHHHhhcccccccccchHhh
Confidence 51 1 0 125569999999999999999999999998899998889999
Q ss_pred CCCCccCchhhhhcccCCCcCHHHHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCC
Q 012386 317 KIPFILRTPHMSAMHHDTSPDLRVVGKKLKDILEISNTSLKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDG 396 (465)
Q Consensus 317 ~~~~~l~t~~ls~i~~d~s~~~~~~~~il~~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~aagiaaii~~~~~~~~~~~ 396 (465)
..++.|+|++||.|++|+++++..++.+++..++++.++.+|++.++++|+.|++|+|+++|++|+++++++++
T Consensus 318 ~~~~~l~t~~ls~i~~d~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~va~~V~~RaA~lla~~ia~i~~~~~~------ 391 (451)
T 1bdg_A 318 KVRNSLLTRYLTDVERDPAHLLYNTHYMLTDDLHVPVVEPIDNRIVRYACEMVVKRAAYLAGAGIACILRRINR------ 391 (451)
T ss_dssp GSTTCSCTTHHHHHTTCCTTCCHHHHHHHHHTSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------
T ss_pred cCCCccchHHHhhhhccCccchHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------
Confidence 99999999999999999999999999999987888666899999999999999999999999999999999998
Q ss_pred CCceEEEEEecceeccchhHHHHHHHHHHHHhccCCCccEEEEEeCChhHHHHHHHHHHhccc
Q 012386 397 EKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHSQY 459 (465)
Q Consensus 397 ~~~~~~V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l~~a~Dgs~iGAAl~Aa~~~~~ 459 (465)
++++|++|||+|++||.|++++++++++++++ ..+|++.+++|||++|||++|+++++.
T Consensus 392 --~~~~V~i~Ggv~~~~~~~~~~l~~~l~~~~~~--~~~i~~~l~~dgs~iGAAllA~~~~~~ 450 (451)
T 1bdg_A 392 --SEVTVGVDGSLYKFHPKFCERMTDMVDKLKPK--NTRFCLRLSEDGSGKGAAAIAASCTRQ 450 (451)
T ss_dssp --SEEEEEEESHHHHHCTTHHHHHHHHHHHHSCT--TCEEEEEECTTHHHHHHHHHHTTC---
T ss_pred --CceEEEEeCchhcCchhHHHHHHHHHHHHhCC--CCcEEEEECCCccHHHHHHHHHHHhhc
Confidence 57899999999999999999999999999876 468999999999999999999888753
No 5
>2yhx_A Hexokinase B; transferase(phosphoryl,alcohol acceptr); HET: OTG; 2.10A {Saccharomyces cerevisiae} SCOP: i.12.1.1 PDB: 1hkg_A
Probab=100.00 E-value=6.1e-90 Score=721.96 Aligned_cols=401 Identities=20% Similarity=0.259 Sum_probs=364.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCCCCCCcceeccccccCCCCCcceeEEEEEeCCceEEEEEEEecCC
Q 012386 38 VAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASEGGSKLKMLISYVDNLPTGDEKGLFYALDLGGTNFRVLRVQLGGR 117 (465)
Q Consensus 38 ~~~l~~~~~~~~~~~~~L~~i~~~~~~em~~gL~~~~~s~~~Mlpt~v~~lP~G~E~G~~LaiDlGGTNlRv~~V~l~g~ 117 (465)
.+.+++|.++|.+|.++|++|+++|..||+ ||++++ |+++||||||+++|+|+|+|+||||||||||||+++|+++|+
T Consensus 6 ~~~~~~~~~~f~~~~~~L~~i~~~~~~em~-gL~~~~-~~~~mlpt~v~~~P~G~E~G~~laiDlGGTnirv~lV~~~G~ 83 (457)
T 2yhx_A 6 XSLVEVHXXVFIVPPXILQAVVSILTTRXD-DXDSSA-ASIPMVPGWVLKQVSGAQAGSFLAIVMGGGDLEVILISLAGR 83 (457)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-HHHSSS-CSSCCEECCCCCCCCSCCCEEEEEEEECSSEEEEEEEEEETT
T ss_pred HHHHHHHHhhhcCCHHHHHHHHHHHHHHhc-CCCCCC-CCCccCccccCCCCCCCccceEEEEEeCCCeEEEEEEEeCCC
Confidence 356778888889999999999999999999 998754 789999999999999999999999999999999999999886
Q ss_pred cceeEEEEeeeeecCCCcccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCcceeeeeeecccccccCCceEEeccCCcc
Q 012386 118 EGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSFPVRQTSIASGDLIKWTKGF 197 (465)
Q Consensus 118 ~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG~tfSfPv~q~~i~~g~Li~wtKgF 197 (465)
.. .+...+++++|++.+.++++++||||+++|++|+++++.. ..+.+++|||||||++|.++++|+|++|+|||
T Consensus 84 ~~--~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~~~~~~~~~----~~~~~~lGi~fs~P~~q~~~~~g~l~~wtKgf 157 (457)
T 2yhx_A 84 QE--SSIXASRSLAAAMSTTAIPSDLWGNXAXSNAAFSSXEFSS----XAGSVPLGFTFXEAGAKEXVIKGQITXQAXAF 157 (457)
T ss_dssp EE--EEEEEEEECCTTTTSCSCTHHHHHHHHHHHHHHHHHHTSS----CSSCEEEEEECCSCCCCSBTTCCBCSSCCTTC
T ss_pred ee--EEEeeEEEEcCCccCCCCHHHHHHHHHHHHHHHHhhcccc----cccccceeeEEEEEEEEeecCceEEEeeccCC
Confidence 31 2233458999998888899999999999999999876532 13567999999999999999999998999999
Q ss_pred ccCCCCCCcHHHHHHHHHHHcCCCeeEEEEEechHHHhhcccccCCceEEEEEEccccceeEEccCCCCcccC-------
Q 012386 198 SIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHNKDAIAAVILGTGTNAAYVERAHAIPKWH------- 270 (465)
Q Consensus 198 ~~~~~~g~dv~~~L~~al~~~gl~v~v~alvNDtvatlla~~y~~~~~~iglIlGTG~Na~yie~~~~i~k~~------- 270 (465)
++++++ ||+++|+++++|+|+|++|++|+||||+|+++++|.++++.||+|+|||+|+||+++.++|++++
T Consensus 158 ~i~~~~--~v~~~L~~~l~r~glpv~vval~NDa~~tll~e~~~~~~~~iglilGTGvgg~~i~~~~~i~kl~~~~~~~~ 235 (457)
T 2yhx_A 158 SLAXLX--KLISAMXNAXFPAGDXXXSVADIXDSHGILXXVNYTDAXIKMGIIFGSGVNAAYWCDSTXIGDAADGGXXGG 235 (457)
T ss_dssp CCSSCS--SBHHHHHHHHHHHHCCEEEEEEECHHHHHHHHHHHHCTTEEEEEEESSSEEEEEEECGGGSSCTTSCSSSCS
T ss_pred CcchhH--HHHHHHHHhHhhcCCcceeEEEEecchhhccchhhcCCccEEEEEECcEEEEEEEECCCccccccccccccc
Confidence 999998 99999999999999999999999999999999999999999999999999999999999888872
Q ss_pred -CC---------C--------------------CCCCceeeeehhccccHHHHHHHHHHHHhhcccCCCCCCCCCCCCCC
Q 012386 271 -GL---------L--------------------PKSGEMIFEKIISGMYLGEIVRRVLCRMAEEANFFGDTVPPKLKIPF 320 (465)
Q Consensus 271 -~~---------~--------------------~~~g~~~fEkm~SG~YLGEi~R~~l~~~~~~~~lf~~~~~~~l~~~~ 320 (465)
+. + ..+| +|||||+||+|||||+|+++.++.+++.+|.+ .|++|..+|
T Consensus 236 ~g~~~in~EwG~f~~~~~~lp~t~~D~~lD~~s~~pG-q~fEkm~SG~yLGel~R~il~~~~~~~~lf~~-~~~~l~~~~ 313 (457)
T 2yhx_A 236 AGXMXICCDQSSFRKAFPSLPQIXYLXTLNXXSPXAX-KTFXKNSXAKNXGQSLRDVLMXFKXXGQXHXX-XAXSFXAAN 313 (457)
T ss_dssp SCCEEEECCCTTTTTTCSSSCCCHHHHHHHHHSSCSC-CHHHHHHCGGGHHHHHHHHHHHHHHTTSSSSS-CCCSCCSTT
T ss_pred CCceEEEEEcccCCCCCCcCCccccccccccccCchH-HHHHHHhhhcCcHHHHHHHHHHHhcccccccc-cchhccccc
Confidence 10 1 1245 69999999999999999999999999999998 899999999
Q ss_pred ccCchhhhhcccCCCcCHHHHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCce
Q 012386 321 ILRTPHMSAMHHDTSPDLRVVGKKLKDILEISNTSLKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQK 400 (465)
Q Consensus 321 ~l~t~~ls~i~~d~s~~~~~~~~il~~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~aagiaaii~~~~~~~~~~~~~~~ 400 (465)
+|+|++||.++.|+++++..++.+|.+.++++ .+.+|++.++++|+.|++|+|+|+|++|++|++++++ ++
T Consensus 314 ~~~t~~ls~i~~d~~~~l~~~~~il~~~~~~~-~t~~D~~~v~~ia~~V~~RaA~l~A~~iaai~~~~~~--------~~ 384 (457)
T 2yhx_A 314 VENTSYPAKIQKLPHFDLRXXXDLFXGDQGIA-XKTXMKXVVRRXLFLIAAYAFRLVVCXIXAICQKKGY--------SS 384 (457)
T ss_dssp CSCTHHHHHHHHCCSSSCHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTC--------SS
T ss_pred CcChHHHHHHhcCCchhhhHHHHHHHHHhCCC-ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC--------Cc
Confidence 99999999999999889988999997879985 5999999999999999999999999999999999998 46
Q ss_pred EEEEEecceeccchhHHHHHHHHHHHHhccCC----CccEEEEEeCChhHHHHHHHHHHhcccc
Q 012386 401 SVIALDGGLFEHYTKFSACMQSTVKELLGEEV----SETVVIEHSNDGSGIGAALLAASHSQYL 460 (465)
Q Consensus 401 ~~V~idGsv~~~~~~f~~~l~~~l~~~~~~~~----~~~v~l~~a~Dgs~iGAAl~Aa~~~~~~ 460 (465)
++|++|||+ ++||.|++++++++++++++.. ..+|+|++++|||++|||++||+++++.
T Consensus 385 ~~V~vdGsv-~~~p~f~~~l~~~l~~l~~~~~~~~~~~~v~~~~~~dgsg~GAAl~aa~~~~~~ 447 (457)
T 2yhx_A 385 GHIAAXGSX-RSYSGFSXNSATXNXNIYGWPQSAXXSKPIXITPAIDGXGAASXVIXSIASAXX 447 (457)
T ss_dssp EEEEEESTT-TTSTTHHHHHHHHHHHHHCCCCSSGGGSSEEEEECCCTTTHHHHHHHHHHHHHH
T ss_pred EEEEEECCc-ccCchHHHHHHHHHHHhhCcccccccCcceEEEECCCchhhhHHHHHHHHhhhh
Confidence 799999999 9999999999999999987643 4689999999999999999999999874
No 6
>1cza_N Hexokinase type I; structurally homologous domains, transferase; HET: GLC G6P ADP; 1.90A {Homo sapiens} SCOP: c.55.1.3 c.55.1.3 c.55.1.3 c.55.1.3 PDB: 1dgk_N* 1hkb_A* 1qha_A* 1hkc_A* 1bg3_A* 2nzt_A*
Probab=100.00 E-value=1.9e-87 Score=757.00 Aligned_cols=409 Identities=37% Similarity=0.565 Sum_probs=364.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCC--CCCCcceeccccccCCCCCcceeEEEEEeCCceEEEEEEEecC
Q 012386 39 AILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASE--GGSKLKMLISYVDNLPTGDEKGLFYALDLGGTNFRVLRVQLGG 116 (465)
Q Consensus 39 ~~l~~~~~~~~~~~~~L~~i~~~~~~em~~gL~~~--~~s~~~Mlpt~v~~lP~G~E~G~~LaiDlGGTNlRv~~V~l~g 116 (465)
+.++++.++|.++.++|++|+++|..||++||+++ +.|+++||||||+++|||+|+|+|||||||||||||++|++.+
T Consensus 468 ~~i~~~~~~f~~~~~~l~~i~~~~~~em~~gL~~~~~~~~~~~mlpt~v~~~P~G~E~G~~lalDlGGTn~Rv~~V~l~~ 547 (917)
T 1cza_N 468 RQIEETLAHFHLTKDMLLEVKKRMRAEMELGLRKQTHNNAVVKMLPSFVRRTPDGTENGDFLALDLGGTNFRVLLVKIRS 547 (917)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHSHHHHTTCSSCCEECSCCSCCCSCCCEEEEEEEESSSSEEEEEEEEEC
T ss_pred hhHHHHHhhhcCCHHHHHHHHHHHHHHHHHHhcccCCCCCCCceECCCCCCCCCCCcceEEEEEEECCCcEEEEEEEeCC
Confidence 34567777788999999999999999999999854 3588999999999999999999999999999999999999974
Q ss_pred CcceeEEEEeeeeecCCCcccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCcceeeeeeecccccccCCceEEeccCCc
Q 012386 117 REGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSFPVRQTSIASGDLIKWTKG 196 (465)
Q Consensus 117 ~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG~tfSfPv~q~~i~~g~Li~wtKg 196 (465)
.+.+++...+++|+||++++.+++++||||||+||.+|+++++.. .+.+++|||||||++|+++++++|++||||
T Consensus 548 g~~~~~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~~l~~~~~~-----~~~l~lG~tfsfPv~q~~i~~~~L~~WtKg 622 (917)
T 1cza_N 548 GKKRTVEMHNKIYAIPIEIMQGTGEELFDHIVSCISDFLDYMGIK-----GPRMPLGFTFSFPCQQTSLDAGILITWTKG 622 (917)
T ss_dssp STTCEEEEEEEEECCCHHHHTSBHHHHHHHHHHHHHHHHHHHTCC-----SSCCEEEEEECSCEEEEETTEEEECCCCTT
T ss_pred CcceeEEeeeeEEecCcccccCCHHHHHHHHHHHHHHHHHHcCCC-----ccceeEEEEeeccccccccCccEECceecc
Confidence 332356555668999999888899999999999999999987642 346799999999999999999999999999
Q ss_pred cccCCCCCCcHHHHHHHHHHHc-CCCeeEEEEEechHHHhhcccccCCceEEEEEEccccceeEEccCCCCcccCCCC--
Q 012386 197 FSIEDTVGEDVVGELTKAMERI-GLDMRVAALVNDTIGTLAGGRYHNKDAIAAVILGTGTNAAYVERAHAIPKWHGLL-- 273 (465)
Q Consensus 197 F~~~~~~g~dv~~~L~~al~~~-gl~v~v~alvNDtvatlla~~y~~~~~~iglIlGTG~Na~yie~~~~i~k~~~~~-- 273 (465)
|++++++|+||+++|+++++|+ ++||++++|+||||||+++++|.++++.||+|+|||+|+||+++.+.|++++++.
T Consensus 623 f~~~~~~g~dv~~~L~~al~r~~~~~v~~val~NDtv~tlla~~y~~~~~~iglIlGTG~na~y~e~~~~i~~~~g~~g~ 702 (917)
T 1cza_N 623 FKATDCVGHDVVTLLRDAIKRREEFDLDVVAVVNDTVGTMMTCAYEEPTCEVGLIVGTGSNACYMEEMKNVEMVEGDQGQ 702 (917)
T ss_dssp CCCBSCTTSBHHHHHHHHHHHHTSCCCEEEEEECHHHHHHHHHHTTCTTEEEEEEESSSEEEEEEEETTTCTTSSCCSSE
T ss_pred cccCCcCCCcHHHHHHHHHHhcCCCCceEEEEEEccHHHHHHhccCCCCcEEEEEEeCCeeEEEEEcCccccCcCCCcCc
Confidence 9999999999999999999887 7999999999999999999999999999999999999999999999988876521
Q ss_pred -------------------------------CCCCceeeeehhccccHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCcc
Q 012386 274 -------------------------------PKSGEMIFEKIISGMYLGEIVRRVLCRMAEEANFFGDTVPPKLKIPFIL 322 (465)
Q Consensus 274 -------------------------------~~~g~~~fEkm~SG~YLGEi~R~~l~~~~~~~~lf~~~~~~~l~~~~~l 322 (465)
+++|.+|||||+||+|||||+|+++.++.+++.+|.+..|+.|.+++.|
T Consensus 703 m~In~EwG~fg~~~~l~~~~T~~D~~~d~~s~~pG~q~~Ek~~SG~yLgel~R~il~~~~~~~~lf~~~~~~~l~~~~~~ 782 (917)
T 1cza_N 703 MCINMEWGAFGDNGCLDDIRTHYDRLVDEYSLNAGKQRYEKMISGMYLGEIVRNILIDFTKKGFLFRGQISETLKTRGIF 782 (917)
T ss_dssp EEEECCGGGTTTTSTTTTTCCHHHHHHHHTSTTTTSCTTGGGTSTTTHHHHHHHHHHHHHHTTSSGGGCCCTTTTSTTCS
T ss_pred EEEecccccCCCcccccCCCCchhhhhhhcCCCCCCCchHHhhhHhHHHHHHHHHHHHhcccccccccccchhhccCCcc
Confidence 1245679999999999999999999999998999998889999999999
Q ss_pred CchhhhhcccCCCcCHHHHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEE
Q 012386 323 RTPHMSAMHHDTSPDLRVVGKKLKDILEISNTSLKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSV 402 (465)
Q Consensus 323 ~t~~ls~i~~d~s~~~~~~~~il~~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~aagiaaii~~~~~~~~~~~~~~~~~ 402 (465)
+|++||.|+.|.+ ++..+..+++. +++ .++.+|++.++++|+.|++|+|+|+|++|++++++++++.. ....+++
T Consensus 783 ~t~~ls~ie~d~~-~~~~~~~i~~~-~~~-~~~~~D~~~~~~ia~~v~~RaA~l~a~~iaai~~~~~~~~~--~~~~~~~ 857 (917)
T 1cza_N 783 ETKFLSQIESDRL-ALLQVRAILQQ-LGL-NSTCDDSILVKTVCGVVSRRAAQLCGAGMAAVVDKIRENRG--LDRLNVT 857 (917)
T ss_dssp CHHHHHHHTCSSC-CHHHHHHHHHH-HTC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CSSEEEE
T ss_pred chHHhhhhhcCcc-hhhHHHHHHHH-hCC-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc--cCccceE
Confidence 9999999999987 46677888875 777 57899999999999999999999999999999999976211 1113478
Q ss_pred EEEecceeccchhHHHHHHHHHHHHhccCCCccEEEEEeCChhHHHHHHHHHHhcccc
Q 012386 403 IALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHSQYL 460 (465)
Q Consensus 403 V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l~~a~Dgs~iGAAl~Aa~~~~~~ 460 (465)
|++|||||++||.|+++++++++++.+ .++|+|++++|||++|||++||++++.+
T Consensus 858 V~vdGsv~~~~p~f~~~~~~~l~~l~~---~~~v~~~~~~dgsg~GAAl~aa~~~~~~ 912 (917)
T 1cza_N 858 VGVDGTLYKLHPHFSRIMHQTVKELSP---KCNVSFLLSEDGSGKGAALITAVGVRLR 912 (917)
T ss_dssp EEEECHHHHHCTTHHHHHHHHHHHHST---TEEEEEEECSSCSHHHHHHHHHHHHHHH
T ss_pred EEECCHHHHcCcHHHHHHHHHHHHhCC---CCceEEEEecCChHHHHHHHHHHHHHHH
Confidence 999999999999999999999999864 2579999999999999999999998764
No 7
>1cza_N Hexokinase type I; structurally homologous domains, transferase; HET: GLC G6P ADP; 1.90A {Homo sapiens} SCOP: c.55.1.3 c.55.1.3 c.55.1.3 c.55.1.3 PDB: 1dgk_N* 1hkb_A* 1qha_A* 1hkc_A* 1bg3_A* 2nzt_A*
Probab=100.00 E-value=1.5e-77 Score=676.44 Aligned_cols=409 Identities=34% Similarity=0.540 Sum_probs=359.1
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCCC--CCCcceeccccccCCCCCcceeEEEEEeCCceEEEEEEE
Q 012386 36 RAVAILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASEG--GSKLKMLISYVDNLPTGDEKGLFYALDLGGTNFRVLRVQ 113 (465)
Q Consensus 36 ~~~~~l~~~~~~~~~~~~~L~~i~~~~~~em~~gL~~~~--~s~~~Mlpt~v~~lP~G~E~G~~LaiDlGGTNlRv~~V~ 113 (465)
.+.+.+++|.++|.+|.++|++|+++|..||++||++++ .|+++||||||+++|+|+|+|+||||||||||||+++|+
T Consensus 17 ~~~~~~~~~~~~f~~~~~~l~~i~~~~~~em~~gL~~~~~~~s~~~mlpt~v~~~P~G~E~G~~laiDlGGTnirv~lv~ 96 (917)
T 1cza_N 17 DQVKKIDKYLYAMRLSDETLIDIMTRFRKEMKNGLSRDFNPTATVKMLPTFVRSIPDGSEKGDFIALDLGGSSFRILRVQ 96 (917)
T ss_dssp HHHHHHHHHTGGGSCCHHHHHHHHHHHHHHHHHHHCTTTGGGCSSCCEECCCCSCCCSCCCEEEEEEEESSSSEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhccCCCCCCcccccccccCCCCCCCCcceEEEEEeCCCeEEEEEEE
Confidence 344567888889999999999999999999999998754 478999999999999999999999999999999999999
Q ss_pred ecCCcceeEEEEeeeeecCCCcccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCcceeeeeeecccccccCCceEEecc
Q 012386 114 LGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSFPVRQTSIASGDLIKW 193 (465)
Q Consensus 114 l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG~tfSfPv~q~~i~~g~Li~w 193 (465)
++|++...++...+++++|++++.++++++|+||+++|++|+++++.. .+.+++|||||||++|+++++|+|++|
T Consensus 97 ~~G~~~~~i~~~~~~~~ip~~~~~~~~~~lf~~Ia~~i~~~l~~~~~~-----~~~~~lGi~fs~P~~q~~~~~G~l~~w 171 (917)
T 1cza_N 97 VNHEKNQNVHMESEVYDTPENIVHGSGSQLFDHVAECLGDFMEKRKIK-----DKKLPVGFTFSFPCQQSKIDEAILITW 171 (917)
T ss_dssp EEEETTEEEEEEEEEECCCHHHHSSBHHHHHHHHHHHHHHHHHHHTCT-----TSCCCEEEEECSCEECSSTTCCEECCC
T ss_pred ecCCCcceEEEEEEEEECCcccccCCHHHHHHHHHHHHHHHHHhcCCC-----CCcccEEEEEccccccCcCCceEEEec
Confidence 987532333233457899987777789999999999999999887532 235699999999999999999999999
Q ss_pred CCccccCCCCCCcHHHHHHHHHHHcC-CCeeEEEEEechHHHhhcccccCCceEEEEEEccccceeEEccCCCCcccCCC
Q 012386 194 TKGFSIEDTVGEDVVGELTKAMERIG-LDMRVAALVNDTIGTLAGGRYHNKDAIAAVILGTGTNAAYVERAHAIPKWHGL 272 (465)
Q Consensus 194 tKgF~~~~~~g~dv~~~L~~al~~~g-l~v~v~alvNDtvatlla~~y~~~~~~iglIlGTG~Na~yie~~~~i~k~~~~ 272 (465)
||||++++++|+||+++|+++++|+| +|+++++|+||||||+++++|.++++.||+|+|||+|+||++++++|+++.+.
T Consensus 172 tkgfni~~~~g~~v~~~L~~~l~r~g~~pv~~val~NDa~~tll~e~~~~~~~~iglilGTGvngg~i~~g~~i~~~~G~ 251 (917)
T 1cza_N 172 TKRFKASGVEGADVVKLLNKAIKKRGDYDANIVAVVNDTVGTMMTCGYDDQHCEVGLIIGTGTNACYMEELRHIDLVEGD 251 (917)
T ss_dssp CTTCCCBTCTTSBHHHHHHHHHHHHCSCCCCEEEEECHHHHHHHHHHHHCTTEEEEEEESSSEEEEEEEEGGGCTTSSCC
T ss_pred ccCCCCCcccCCchHHHHHHHHhhcCCCCceEEEEEEhhHHHHHHhhccCCCcEEEEEEECCcceEEEecCcccccccCC
Confidence 99999999999999999999999987 89999999999999999999999999999999999999999999966655442
Q ss_pred ------------CC---------------------CCCceeeeehhccccHHHHHHHHHHHHhhcccCCCCCCCCCCCCC
Q 012386 273 ------------LP---------------------KSGEMIFEKIISGMYLGEIVRRVLCRMAEEANFFGDTVPPKLKIP 319 (465)
Q Consensus 273 ------------~~---------------------~~g~~~fEkm~SG~YLGEi~R~~l~~~~~~~~lf~~~~~~~l~~~ 319 (465)
+. .+|.+|||||+||+||||++|+++.++.+++.+|.+..|+.|..+
T Consensus 252 ~g~~~in~E~G~f~~~~~l~~~~t~~D~~~dc~~g~pg~g~~Ek~~SG~yLgel~r~~l~~~~~~~~~~~~~~~~~l~~~ 331 (917)
T 1cza_N 252 EGRMCINTEWGAFGDDGSLEDIRTEFDRAIDAYSLNPGKQLFEKMVSGMYLGELVRLILVKMAKEGLLFEGRITPELLTR 331 (917)
T ss_dssp SSEEEEECCGGGTTTTTTTTTTCCHHHHHHHHTSSSTTSSTTHHHHSHHHHHHHHHHHHHHHHHTTSSGGGCCCTTTTST
T ss_pred CCceEEeccccccCCccccccCCCccccccccCCcCCCccHhHHHhhhhhHHHHHHHHHHHhhccccccccccchhhccc
Confidence 10 123469999999999999999999999888888887778888888
Q ss_pred CccCchhhhhcccCCCcCHHHHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCcCCCC
Q 012386 320 FILRTPHMSAMHHDTSPDLRVVGKKLKDILEISNTSLKMRKLVVELCDIVATRGARLSAAGIVGILKKL--GRDTVRDGE 397 (465)
Q Consensus 320 ~~l~t~~ls~i~~d~s~~~~~~~~il~~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~aagiaaii~~~--~~~~~~~~~ 397 (465)
+.+++++++.++ +.++++..+..+++. +++ .++..|++.++++|..|++|+|+++|++|++|++++ +|.. .
T Consensus 332 ~~l~t~~vs~~~-~~~~~~~~~~~i~~~-~~~-~~~~~D~~~~~~~a~~v~~raa~llA~gia~ii~~l~~dp~~----~ 404 (917)
T 1cza_N 332 GKFNTSDVSAIE-KNKEGLHNAKEILTR-LGV-EPSDDDCVSVQHVCTIVSFRSANLVAATLGAILNRLRDNKGT----P 404 (917)
T ss_dssp TSSCHHHHHHHT-CTTTHHHHHHHHHHH-TTC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----S
T ss_pred cccChHHHHHHh-cccccHHHHHHHHHH-hCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc----c
Confidence 999999999998 557788888888876 777 478999999999999999999999999999999999 6621 1
Q ss_pred CceEEEEEecceeccchhHHHHHHHHHHHHhccCCCccEEEEEeCChhHHHHHHHHHHhccc
Q 012386 398 KQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHSQY 459 (465)
Q Consensus 398 ~~~~~V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l~~a~Dgs~iGAAl~Aa~~~~~ 459 (465)
.++.+|++||||+++||.|+++++++++++++. ..++|++++|||++|||++||++++.
T Consensus 405 ~~~~~IvigGgV~~~~~~~~~~l~~~l~~~~~~---~~~~i~~a~dgs~~GAA~laa~~~~l 463 (917)
T 1cza_N 405 RLRTTVGVDGSLYKTHPQYSRRFHKTLRRLVPD---SDVRFLLSESGSGKGAAMVTAVAYRL 463 (917)
T ss_dssp SEEEEEEEECHHHHHCSSHHHHHHHHHHHHCTT---EEEEEEECTTCHHHHHHHHHHHHHHH
T ss_pred CcceEEEECCchhhccHHHHHHHHHHHHHhcCC---CceEEEEeccchHHHHHHHHHhHhhh
Confidence 134689999999999999999999999998732 57999999999999999999998865
No 8
>3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A {Streptomyces griseus} PDB: 3vgk_A* 3vgm_A*
Probab=99.95 E-value=5e-27 Score=235.85 Aligned_cols=284 Identities=18% Similarity=0.213 Sum_probs=209.3
Q ss_pred eeEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCCcccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCcceeee
Q 012386 95 GLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGF 174 (465)
Q Consensus 95 G~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG~ 174 (465)
+++|+||+|||++|++++++.|+ ++.+. +++.| .+.+++++.|++.|.+++++ .+...+|+
T Consensus 2 ~~~lgiDiGgt~i~~~l~d~~G~---i~~~~--~~~~~-----~~~~~~~~~i~~~i~~~~~~---------~~i~gigi 62 (321)
T 3vgl_A 2 GLTIGVDIGGTKIAAGVVDEEGR---ILSTF--KVATP-----PTAEGIVDAICAAVAGASEG---------HDVEAVGI 62 (321)
T ss_dssp CEEEEEEECSSEEEEEEECTTCC---BCCCE--EEECC-----SSHHHHHHHHHHHHHHHHTT---------CCEEEEEE
T ss_pred cEEEEEEECCCEEEEEEECCCCC---EEEEE--EeeCC-----CCHHHHHHHHHHHHHHHHhh---------cCceEEEE
Confidence 47899999999999999999885 55433 34443 35789999999999998753 24788999
Q ss_pred eeeccccccc--CCceEEeccCCccccCCCCCCcHHHHHHHHHHHcCCCeeEEEEEechHHHhhccccc----CCceEEE
Q 012386 175 TFSFPVRQTS--IASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH----NKDAIAA 248 (465)
Q Consensus 175 tfSfPv~q~~--i~~g~Li~wtKgF~~~~~~g~dv~~~L~~al~~~gl~v~v~alvNDtvatlla~~y~----~~~~~ig 248 (465)
++|+|++... +.....+.|. +.|+.+.|++.+ ++|| .+.||++++++++.+. +.++.+.
T Consensus 63 ~~pG~vd~~~g~v~~~~~l~w~---------~~~l~~~l~~~~---~~pv---~v~NDa~aaal~E~~~g~~~~~~~~~~ 127 (321)
T 3vgl_A 63 GAAGYVDDKRATVLFAPNIDWR---------HEPLKDKVEQRV---GLPV---VVENDANAAAWGEYRFGAGQGHDDVIC 127 (321)
T ss_dssp EESSEECTTSSCEEECSSSCCE---------EECHHHHHHHHH---CSCE---EEEEHHHHHHHHHHHHSTTTTCSSEEE
T ss_pred eccccEeCCCCEEEeCCCCCCc---------CCCHHHHHhhhh---CCCE---EEEehhhhHHHHHHHhCCCCCCCCEEE
Confidence 9999997531 2222222554 689999999999 8996 9999999999999874 5689999
Q ss_pred EEEccccceeEEccCCCCcccCCC--------CCCCCc------e-eeeehhccccHHHHHHHHHHHHhhcccCCCCCCC
Q 012386 249 VILGTGTNAAYVERAHAIPKWHGL--------LPKSGE------M-IFEKIISGMYLGEIVRRVLCRMAEEANFFGDTVP 313 (465)
Q Consensus 249 lIlGTG~Na~yie~~~~i~k~~~~--------~~~~g~------~-~fEkm~SG~YLGEi~R~~l~~~~~~~~lf~~~~~ 313 (465)
+++|||++++++.+++.+.++++. +++.|. . |+|.++|+..|-+..+...... |
T Consensus 128 l~~GtGiG~gii~~G~l~~G~~g~aGEiGh~~v~~~g~~c~cG~~gclE~~~S~~al~~~~~~~~~~~-----------~ 196 (321)
T 3vgl_A 128 ITLGTGLGGGIIIGNKLRRGRFGVAAEFGHIRVVPDGLLCGCGSQGCWEQYASGRALVRYAKQRANAT-----------P 196 (321)
T ss_dssp EEESSSEEEEEEETTEECCCTTSCCCCGGGSBSSTTCSBCTTSCBSBGGGTSSHHHHHHHHHHHHHHC-----------G
T ss_pred EEeCcceEEEEEECCEEecCCCCCCccccceEecCCCCCCCCCCcCcHHHhcCHHHHHHHHHHHhhcC-----------C
Confidence 999999999999999888776542 122222 2 9999999999966555443321 0
Q ss_pred CCCCCCCccCchhhhhc-ccCCCcCHHHHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 012386 314 PKLKIPFILRTPHMSAM-HHDTSPDLRVVGKKLKDILEISNTSLKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRDT 392 (465)
Q Consensus 314 ~~l~~~~~l~t~~ls~i-~~d~s~~~~~~~~il~~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~aagiaaii~~~~~~~ 392 (465)
.. +..+... ..+. ... ....+++. ++.++..|..+++++++++|.+|+++++.++|
T Consensus 197 ~~--------~~~~~~~~~~~~-~~~-~~~~i~~~-----------a~~gD~~a~~~~~~~~~~La~~i~~l~~~l~p-- 253 (321)
T 3vgl_A 197 EN--------AAVLLGLGDGSV-DGI-EGKHISEA-----------ARQGDPVAVDSFRELARWAGAGLADLASLFDP-- 253 (321)
T ss_dssp GG--------CHHHHHTTTSSS-TTC-CHHHHHHH-----------HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred cc--------hhhhhhcccCcc-ccC-CHHHHHHH-----------HHcCCHHHHHHHHHHHHHHHHHHHHHHHHhCC--
Confidence 00 0000000 0000 000 12333333 66778999999999999999999999999999
Q ss_pred cCCCCCceEEEEEecceeccchhHHHHHHHHHHHHhc-cCCCccEEEEEe---CChhHHHHHHHHH
Q 012386 393 VRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLG-EEVSETVVIEHS---NDGSGIGAALLAA 454 (465)
Q Consensus 393 ~~~~~~~~~~V~idGsv~~~~~~f~~~l~~~l~~~~~-~~~~~~v~l~~a---~Dgs~iGAAl~Aa 454 (465)
+ .|.++|++....+.|.+.+++.+++... +.....+.|+.+ +|++.+|||.++.
T Consensus 254 ------~--~IvlgGgi~~~~~~l~~~l~~~l~~~~~~~~~~~~~~i~~s~l~~~a~l~GAa~l~~ 311 (321)
T 3vgl_A 254 ------S--AFIVGGGVSDEGELVLDPIRKSFRRWLIGGEWRPHAQVLAAQLGGKAGLVGAADLAR 311 (321)
T ss_dssp ------S--EEEEESGGGGGTHHHHHHHHHHHHHHCTTGGGSCCCEEEECTTGGGHHHHHHHHHHH
T ss_pred ------C--EEEEeChhhcchHHHHHHHHHHHHHhcccccccCCCEEEECCCCCcHHHHHHHHHHH
Confidence 4 6889999999999999999999998765 333446777776 8999999998764
No 9
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=99.95 E-value=1.9e-26 Score=240.63 Aligned_cols=328 Identities=15% Similarity=0.165 Sum_probs=230.4
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHhhcCCCC-------CCcceeccccccCCCCCcceeEEEEEeCCceEEEEEEEec
Q 012386 43 EMEEKCGTPIGKLRQVADAMTVEMHAGLASEGG-------SKLKMLISYVDNLPTGDEKGLFYALDLGGTNFRVLRVQLG 115 (465)
Q Consensus 43 ~~~~~~~~~~~~L~~i~~~~~~em~~gL~~~~~-------s~~~Mlpt~v~~lP~G~E~G~~LaiDlGGTNlRv~~V~l~ 115 (465)
++.+.+.++...+.++.++|.+ +||-.+.+ ..-+.+.++. | +.+++|+||+|||++|++++++.
T Consensus 58 ela~~~gls~~tv~~~v~~L~~---~gli~~~~~~~~s~~GR~~~~l~~~---~---~~~~~lGIDiGgt~i~~~l~d~~ 128 (429)
T 1z05_A 58 DLSKESELAPASITKITRELID---AHLIHETTVQEAISRGRPAVGLQTN---N---LGWQFLSMRLGRGYLTIALHELG 128 (429)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHH---TTSEEEECHHHHHHHTSCCEEEEEC---C---TTEEEEEEEEETTEEEEEEEETT
T ss_pred HHHHHHCCCHHHHHHHHHHHHH---CCCEEeccccCCCCCCCCCeEEEEC---C---CCCEEEEEEECCCEEEEEEECCC
Confidence 3444556777777778777766 56633211 0112233332 2 35789999999999999999998
Q ss_pred CCcceeEEEEeeeeecCCCcccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCcceeeeeeecccccccCCceEEeccCC
Q 012386 116 GREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSFPVRQTSIASGDLIKWTK 195 (465)
Q Consensus 116 g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG~tfSfPv~q~~i~~g~Li~wtK 195 (465)
|+ ++.+. .++.|. .+.+++++.|++.|.+++++.+... .+...+|+++|+|++.. .+.++ |..
T Consensus 129 G~---il~~~--~~~~~~----~~~~~~~~~l~~~i~~~~~~~~~~~----~~i~gigi~~pG~vd~~---~g~v~-~~~ 191 (429)
T 1z05_A 129 GE---VLIDT--KIDIHE----IDQDDVLARLLFEIEEFFQTYAAQL----DRVTSIAITLPGLVNSE---QGIVL-QMP 191 (429)
T ss_dssp SC---EEEEE--EEECCC----CBHHHHHHHHHHHHHHHHHHTTTTC----CEEEEEEEEESSEEETT---TTEEE-ECS
T ss_pred CC---EEEEE--EEcCCC----CCHHHHHHHHHHHHHHHHHhcCCCc----CceEEEEEeccCcEeCC---CCeEe-ecC
Confidence 84 66543 455543 2478999999999999998765321 45789999999999753 23332 111
Q ss_pred ccccCCCCCCcHHHHHHHHHHHcCCCeeEEEEEechHHHhhccccc----CCceEEEEEEccccceeEEccCCCCcccCC
Q 012386 196 GFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH----NKDAIAAVILGTGTNAAYVERAHAIPKWHG 271 (465)
Q Consensus 196 gF~~~~~~g~dv~~~L~~al~~~gl~v~v~alvNDtvatlla~~y~----~~~~~iglIlGTG~Na~yie~~~~i~k~~~ 271 (465)
++ +|.+.|+.+.|++.+ ++|| .|.||++++++++.+. +.++.+.+++|||++++++.+++.+.+.++
T Consensus 192 --~l-~w~~~~l~~~L~~~~---~~pV---~v~NDa~aaalaE~~~g~~~~~~~~v~l~~GtGiG~giv~~G~l~~G~~g 262 (429)
T 1z05_A 192 --HY-NVKNLALGPEIYKAT---GLPV---FVANDTRAWALAEKLFGHSQDVDNSVLISIHHGLGAGIVLDGRVLQGRHG 262 (429)
T ss_dssp --SS-BCSSBCHHHHHHHHH---CSCE---EEEEHHHHHHHHHHHHSTTTTCSSEEEEEESSSEEEEEEETTEECCTTTT
T ss_pred --CC-CCCCCCHHHHHHHHh---CCCE---EEechhHHHHHHHHHhCCCCCCCcEEEEEECCcEEEEEEECCEEeeCCCC
Confidence 11 134799999999999 9996 9999999999999864 568999999999999999999887776543
Q ss_pred ---C-----CCCC------Cce-eeeehhccccHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccCchhhhhcccCCCc
Q 012386 272 ---L-----LPKS------GEM-IFEKIISGMYLGEIVRRVLCRMAEEANFFGDTVPPKLKIPFILRTPHMSAMHHDTSP 336 (465)
Q Consensus 272 ---~-----~~~~------g~~-~fEkm~SG~YLGEi~R~~l~~~~~~~~lf~~~~~~~l~~~~~l~t~~ls~i~~d~s~ 336 (465)
+ +++. |.. |+|.++|+..|-+.++..+ ... . ++.+.. ....
T Consensus 263 ~AGEiGH~~v~~~g~~c~cG~~gclE~~~S~~al~~~~~~~~---~~~------~-~~~l~~--------------~~~~ 318 (429)
T 1z05_A 263 NIGELGHIQIDPQGKRCHCGNYGCLETVASSQAIRDQVTARI---QAG------E-PSCLAT--------------VEEI 318 (429)
T ss_dssp CTTBCTTSBCCTTCCBCTTSCBSBTHHHHSHHHHHHHHHHHH---HTT------C-CCTTTT--------------CSSC
T ss_pred cccccCceEEcCCCCCCCCCCCcchHHHhCHHHHHHHHHHHh---hcc------c-cccccc--------------ccCC
Confidence 1 1222 222 9999999998855443321 110 0 111100 0001
Q ss_pred CHHHHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEecceeccchhH
Q 012386 337 DLRVVGKKLKDILEISNTSLKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKF 416 (465)
Q Consensus 337 ~~~~~~~il~~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~aagiaaii~~~~~~~~~~~~~~~~~V~idGsv~~~~~~f 416 (465)
+ ...+++. ++.++..|..+++++++++|.+|+++++.++| + .|+++|++....+.|
T Consensus 319 ~---~~~i~~~-----------a~~gD~~a~~il~~~~~~L~~~i~~l~~~ldP--------~--~IvlgG~i~~~~~~l 374 (429)
T 1z05_A 319 S---IEDICAA-----------AADGDPLAVDVIQQLGRYLGAAIAIVINLFNP--------E--KILIGGVINQAKSIL 374 (429)
T ss_dssp C---HHHHHHH-----------HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHCC--------S--EEEEESGGGGGHHHH
T ss_pred C---HHHHHHH-----------HHcCCHHHHHHHHHHHHHHHHHHHHHHHhcCC--------C--EEEEeCccccchHHH
Confidence 1 2233333 56778899999999999999999999999999 4 688999999999999
Q ss_pred HHHHHHHHHHHhccCCCccEEEEEe---CChhHHHHHHHHH
Q 012386 417 SACMQSTVKELLGEEVSETVVIEHS---NDGSGIGAALLAA 454 (465)
Q Consensus 417 ~~~l~~~l~~~~~~~~~~~v~l~~a---~Dgs~iGAAl~Aa 454 (465)
.+.+++.+++...+.....+.|..+ +| +.+|||.++.
T Consensus 375 ~~~l~~~l~~~~~~~~~~~~~I~~s~l~~~-~~~GAa~l~~ 414 (429)
T 1z05_A 375 YPSIEQCIREQSLPVYHQDLKLVESRFYKQ-ATMPGAALIK 414 (429)
T ss_dssp HHHHHHHHHHHSCHHHHTTCEEEECSCSSC-TTHHHHHHHH
T ss_pred HHHHHHHHHHhcccccCCCcEEEEecCCCc-cHHHHHHHHH
Confidence 9999999988743211224566665 77 9999998864
No 10
>2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis}
Probab=99.95 E-value=8.1e-27 Score=233.77 Aligned_cols=292 Identities=17% Similarity=0.185 Sum_probs=209.1
Q ss_pred eeEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCCcccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCcceeee
Q 012386 95 GLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGF 174 (465)
Q Consensus 95 G~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG~ 174 (465)
+++|+||+|||++|++++++.|+ ++.+. +++.|.. .+.+++++.+.+.|.+++++.+... .+...+|+
T Consensus 6 ~~~lgiDiggt~~~~~l~d~~g~---il~~~--~~~~~~~---~~~~~~~~~l~~~i~~~~~~~~~~~----~~i~~igi 73 (326)
T 2qm1_A 6 KKIIGIDLGGTTIKFAILTTDGV---VQQKW--SIETNIL---EDGKHIVPSIIESIRHRIDLYNMKK----EDFVGIGM 73 (326)
T ss_dssp CEEEEEEECSSEEEEEEEETTCC---EEEEE--EEECCCT---TTTTTHHHHHHHHHHHHHHHTTCCG----GGEEEEEE
T ss_pred cEEEEEEECCCEEEEEEECCCCC---EEEEE--EEcCCCC---CCHHHHHHHHHHHHHHHHHHcCCCc----cceeEEEE
Confidence 58999999999999999999884 66543 4555543 3578899999999999998765321 35788999
Q ss_pred eeecccccccCCceEEeccCCccccCCCCCC-cHHHHHHHHHHHcCCCeeEEEEEechHHHhhccccc----CCceEEEE
Q 012386 175 TFSFPVRQTSIASGDLIKWTKGFSIEDTVGE-DVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH----NKDAIAAV 249 (465)
Q Consensus 175 tfSfPv~q~~i~~g~Li~wtKgF~~~~~~g~-dv~~~L~~al~~~gl~v~v~alvNDtvatlla~~y~----~~~~~igl 249 (465)
++|+|++.. ++.++. +. ++ ++.+. |+.+.|++.+ ++|| .+.||+++++++++|. +.++.+.+
T Consensus 74 ~~pG~vd~~---~g~v~~-~~--~l-~w~~~~~l~~~l~~~~---~~pv---~v~ND~~aaa~~e~~~g~~~~~~~~~~l 140 (326)
T 2qm1_A 74 GTPGSVDIE---KGTVVG-AY--NL-NWTTVQPVKEQIESAL---GIPF---ALDNDANVAALGERWKGAGENNPDVIFI 140 (326)
T ss_dssp EESSEEETT---TTEEEC-BG--GG-TBCSCBCHHHHHHHHH---CSCE---EEEEHHHHHHHHHHHHSTTTTCSCEEEE
T ss_pred ecccceeCC---CCEEEe-cC--CC-CccCCchHHHHHHHHh---CCCE---EEecHHHHHHHHHHHhCCCCCCCcEEEE
Confidence 999999752 233321 11 11 23368 9999999999 8996 8999999999999864 46789999
Q ss_pred EEccccceeEEccCCCCcccCC---C-----CCCCC------c-eeeeehhccccHHHHHHHHHHHHhhcccCCCCCCCC
Q 012386 250 ILGTGTNAAYVERAHAIPKWHG---L-----LPKSG------E-MIFEKIISGMYLGEIVRRVLCRMAEEANFFGDTVPP 314 (465)
Q Consensus 250 IlGTG~Na~yie~~~~i~k~~~---~-----~~~~g------~-~~fEkm~SG~YLGEi~R~~l~~~~~~~~lf~~~~~~ 314 (465)
++|||++++++.+++.+.+.++ + +++.| . -|+|.++|+.+|-+.++..+ .. ...+.
T Consensus 141 ~~GtGiG~giv~~G~l~~G~~g~aGE~Gh~~~~~~g~~c~cG~~gcle~~~s~~~l~~~~~~~~---~~------~~~~~ 211 (326)
T 2qm1_A 141 TLGTGVGGGIVAAGKLLHGVAGCAGEVGHVTVDPNGFDCTCGKRGCLETVSSATGVVRVARHLS---EE------FAGDS 211 (326)
T ss_dssp EESSSEEEEEEETTEECCCSSSCTTCGGGSBSCTTSCBCTTSSBCBTHHHHSHHHHHHHHHHHT---TT------CCSCC
T ss_pred EECCceEEEEEECCEEeecCCCcccccCcEEECCCCCcCCCCCccchHhhhCHHHHHHHHHHHh---hc------ccccc
Confidence 9999999999999888776543 2 12222 2 29999999999955443321 00 00000
Q ss_pred CCCCCCccCchhhhhcccCCCcCHHHHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcC
Q 012386 315 KLKIPFILRTPHMSAMHHDTSPDLRVVGKKLKDILEISNTSLKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVR 394 (465)
Q Consensus 315 ~l~~~~~l~t~~ls~i~~d~s~~~~~~~~il~~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~aagiaaii~~~~~~~~~ 394 (465)
. +..+..+. .+. ....+++. ++.++..|..+++++++++|.+|+++++.++|
T Consensus 212 ~-----------~~~~~~~~-~~~-~~~~v~~~-----------a~~gd~~a~~i~~~~~~~L~~~i~~l~~~l~p---- 263 (326)
T 2qm1_A 212 E-----------LKQAIDDG-QDV-SSKDVFEF-----------AEKGDHFALMVVDRVCFYLGLATGNLGNTLNP---- 263 (326)
T ss_dssp H-----------HHHHHHHT-CCC-CHHHHHHH-----------HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHCC----
T ss_pred h-----------hhhccccc-cCC-CHHHHHHH-----------HHcCCHHHHHHHHHHHHHHHHHHHHHHHhcCC----
Confidence 0 00000000 000 12233332 56678999999999999999999999999998
Q ss_pred CCCCceEEEEEecceeccchhHHHHHHHHHHHHhccCCCccEEEEEe---CChhHHHHHHHHH
Q 012386 395 DGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHS---NDGSGIGAALLAA 454 (465)
Q Consensus 395 ~~~~~~~~V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l~~a---~Dgs~iGAAl~Aa 454 (465)
+ .|+++|++....+.|.+.+++.+++...+.....+.|..+ +|++.+|||.++.
T Consensus 264 ----~--~IvlgGg~~~~~~~~~~~l~~~l~~~~~~~~~~~~~i~~~~~~~~a~~~GAa~l~~ 320 (326)
T 2qm1_A 264 ----D--SVVIGGGVSAAGEFLRSRVEKYFQEFTFPQVRNSTKIKLAELGNEAGVIGAASLAL 320 (326)
T ss_dssp ----S--EEEEEESGGGGTHHHHHHHHHHHHHTSCHHHHTTSEEEECSSGGGHHHHHHHHHGG
T ss_pred ----C--EEEEcChhhhchHHHHHHHHHHHHHhhhhccCCCcEEEEcCcCchHHHHHHHHHHH
Confidence 4 6889999999999999999999988754321224566654 7889999998864
No 11
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=99.95 E-value=1e-25 Score=233.25 Aligned_cols=331 Identities=14% Similarity=0.110 Sum_probs=231.3
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHhhcCCCC----CCcceeccccccCCCCCcceeEEEEEeCCceEEEEEEEecCCc
Q 012386 43 EMEEKCGTPIGKLRQVADAMTVEMHAGLASEGG----SKLKMLISYVDNLPTGDEKGLFYALDLGGTNFRVLRVQLGGRE 118 (465)
Q Consensus 43 ~~~~~~~~~~~~L~~i~~~~~~em~~gL~~~~~----s~~~Mlpt~v~~lP~G~E~G~~LaiDlGGTNlRv~~V~l~g~~ 118 (465)
++.+.+.++...+.++.++|.+ +||-.+.+ |+----|+.+.--| +.+++|+||+|||++|++++++.|+
T Consensus 35 ~la~~~~ls~~tv~~~v~~L~~---~g~i~~~~~~~~~~~GR~~~~l~~~~---~~~~~lgiDiG~t~i~~~l~d~~G~- 107 (406)
T 1z6r_A 35 DLSRLAQLAPASITKIVHEMLE---AHLVQELEIKEAGNRGRPAVGLVVET---EAWHYLSLRISRGEIFLALRDLSSK- 107 (406)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHH---HTSEEEC-------------CEEECC---TTCEEEEEEEETTEEEEEEEETTCC-
T ss_pred HHHHHHCCCHHHHHHHHHHHHH---CCcEEeecccCCCCCCCCCeEEEEcC---CccEEEEEEEcCCEEEEEEEcCCCC-
Confidence 4555667888888888888876 67743211 11111222221112 3568999999999999999999884
Q ss_pred ceeEEEEeeeeecCCCcccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCcceeeeeeecccccccCCceEEeccCCccc
Q 012386 119 GRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSFPVRQTSIASGDLIKWTKGFS 198 (465)
Q Consensus 119 ~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG~tfSfPv~q~~i~~g~Li~wtKgF~ 198 (465)
++.+. .++.|. .+.+++++.+++.|.+++++.+.. ..+...+|+++|+|++. ..+.+. |.. +
T Consensus 108 --il~~~--~~~~~~----~~~~~~~~~l~~~i~~~~~~~~~~----~~~i~gigi~~pG~vd~---~~g~v~-~~~--~ 169 (406)
T 1z6r_A 108 --LVVEE--SQELAL----KDDLPLLDRIISHIDQFFIRHQKK----LERLTSIAITLPGIIDT---ENGIVH-RMP--F 169 (406)
T ss_dssp --EEEEE--EEECCS----SCSSCHHHHHHHHHHHHHHHTGGG----CCCEEEEEEEESSEEET---TTTEEE-ECT--T
T ss_pred --EEEEE--EecCCC----CCHHHHHHHHHHHHHHHHHhcCCC----cCceeEEEEEeecCEeC---CCCEEe-cCC--C
Confidence 66543 445442 357889999999999999876432 14578999999999975 234444 222 2
Q ss_pred cCCCCCCcHHHHHHHHHHHcCCCeeEEEEEechHHHhhccccc----CCceEEEEEEccccceeEEccCCCCcccCC---
Q 012386 199 IEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH----NKDAIAAVILGTGTNAAYVERAHAIPKWHG--- 271 (465)
Q Consensus 199 ~~~~~g~dv~~~L~~al~~~gl~v~v~alvNDtvatlla~~y~----~~~~~iglIlGTG~Na~yie~~~~i~k~~~--- 271 (465)
.+++.+.|+.+.|++.+ ++|| .+.||++++++++.+. +.++.+.+++|||++++++.+++.+.+.++
T Consensus 170 l~~w~~~~l~~~l~~~~---~~pv---~v~NDa~aaalaE~~~g~~~~~~~~v~l~~GtGiG~giv~~G~l~~G~~g~AG 243 (406)
T 1z6r_A 170 YEDVKEMPLGEALEQHT---GVPV---YIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLV 243 (406)
T ss_dssp CTTCSSBCHHHHHHHHH---SSCE---EEEEHHHHHHHHHHHHSTTTTCSSEEEEEESSSEEEEEEETTEETTTTSSCCB
T ss_pred CCCccCCCHHHHHHHHH---CCCE---EEechhHHHHHHHHHhcCCCCCCcEEEEEECCcEEEEEEECCEEeecCCCcCc
Confidence 33455899999999999 8996 8999999999999864 567899999999999999999887776553
Q ss_pred C-----CCCC------Cce-eeeehhccccHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccCchhhhhcccCCCcCHH
Q 012386 272 L-----LPKS------GEM-IFEKIISGMYLGEIVRRVLCRMAEEANFFGDTVPPKLKIPFILRTPHMSAMHHDTSPDLR 339 (465)
Q Consensus 272 ~-----~~~~------g~~-~fEkm~SG~YLGEi~R~~l~~~~~~~~lf~~~~~~~l~~~~~l~t~~ls~i~~d~s~~~~ 339 (465)
+ +++. |.. |+|.++|+..|-+.++..+ .. .+ +..+. ....
T Consensus 244 EiGh~~v~~~g~~c~cG~~gclE~~~S~~al~~~~~~~~---~~---~~----~~~~~---------------~~~~--- 295 (406)
T 1z6r_A 244 EIGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRL---NQ---SM----SSMLH---------------GQPL--- 295 (406)
T ss_dssp CGGGSBSCTTSCBCTTSCBSBTHHHHSHHHHHHHHHHHH---TT---CT----TCGGG---------------SSCC---
T ss_pred cCCceEecCCCCCCCCCCccchHHHcCHHHHHHHHHHhh---hc---cc----ccccC---------------cccC---
Confidence 2 1222 222 9999999998854433321 00 00 00000 0001
Q ss_pred HHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEecceeccchhHHHH
Q 012386 340 VVGKKLKDILEISNTSLKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSAC 419 (465)
Q Consensus 340 ~~~~il~~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~aagiaaii~~~~~~~~~~~~~~~~~V~idGsv~~~~~~f~~~ 419 (465)
....+++. ++.++..|..+++++++++|.+|+++++.++| + .|+++|++....+.|.+.
T Consensus 296 ~~~~v~~~-----------a~~gD~~a~~~l~~~~~~L~~~i~~l~~~ldP--------~--~IvlgG~i~~~~~~l~~~ 354 (406)
T 1z6r_A 296 TVDSLCQA-----------ALRGDLLAKDIITGVGAHVGRILAIMVNLFNP--------Q--KILIGSPLSKAADILFPV 354 (406)
T ss_dssp CHHHHHHH-----------HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHCC--------S--EEEEESGGGGGHHHHHHH
T ss_pred CHHHHHHH-----------HHcCCHHHHHHHHHHHHHHHHHHHHHHHhcCC--------C--EEEEeCccchhhHHHHHH
Confidence 12233333 56678899999999999999999999999999 4 588999999999999999
Q ss_pred HHHHHHHHhccCCCccEEEEEe---CChhHHHHHHHH
Q 012386 420 MQSTVKELLGEEVSETVVIEHS---NDGSGIGAALLA 453 (465)
Q Consensus 420 l~~~l~~~~~~~~~~~v~l~~a---~Dgs~iGAAl~A 453 (465)
+++.+++...+.....+.|..+ +|++.+|||++.
T Consensus 355 i~~~l~~~~~~~~~~~~~i~~s~l~~~a~~~GAa~~~ 391 (406)
T 1z6r_A 355 ISDSIRQQALPAYSQHISVESTQFSNQGTMAGAALVK 391 (406)
T ss_dssp HHHHHHHHSCHHHHTTCEEEECSCCCCTTTTHHHHHH
T ss_pred HHHHHHHhcccccCCCcEEEEeCCCChHHHHHHHHHH
Confidence 9999988743221224566654 789999997654
No 12
>3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.65A {Cytophaga hutchinsonii}
Probab=99.95 E-value=2.4e-26 Score=230.83 Aligned_cols=289 Identities=16% Similarity=0.171 Sum_probs=210.8
Q ss_pred CcceeEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCCcccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCcce
Q 012386 92 DEKGLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRE 171 (465)
Q Consensus 92 ~E~G~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~ 171 (465)
...+++|+||+|||++|++++++.|+ ++.+. +++.|.. .+.+++++.|.+.|.++++. . .+...
T Consensus 16 ~~~~~~lgidiggt~i~~~l~d~~g~---il~~~--~~~~~~~---~~~~~~~~~i~~~i~~~~~~-~-------~~i~g 79 (321)
T 3r8e_A 16 YFQGMILGIDVGGTSVKFGLVTPEGE---IQNAT--RFMTADW---VNGIGFVESMKLEIGNFLKQ-Y-------PIVKG 79 (321)
T ss_dssp ---CCEEEEECCSSEEEEEEECTTCC---EEEEE--EEEHHHH---HTTTCHHHHHHHHHHHHHHH-C-------TTCCE
T ss_pred ccCcEEEEEEECCCEEEEEEEcCCCc---EEEEE--EEeCCCC---CCHHHHHHHHHHHHHHHHhc-c-------CCeeE
Confidence 34568999999999999999999884 66544 4555432 36788999999999999862 1 34788
Q ss_pred eeeeeecccccccCCceEEeccCCccccCCCCCCcHHHHHHHHHHHcCCCeeEEEEEechHHHhhccccc----CCceEE
Q 012386 172 LGFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH----NKDAIA 247 (465)
Q Consensus 172 lG~tfSfPv~q~~i~~g~Li~wtKgF~~~~~~g~dv~~~L~~al~~~gl~v~v~alvNDtvatlla~~y~----~~~~~i 247 (465)
+|+++|+|++.. ++.++..+ +++++.+.|+.+.|++.+. ++|| .|.||+++.++++.+. +.++.+
T Consensus 80 igi~~pG~vd~~---~g~v~~~~---~l~~w~~~~l~~~l~~~~~--~~pV---~v~NDa~aaalaE~~~g~~~~~~~~v 148 (321)
T 3r8e_A 80 VGIGWPGLVSLD---RTKVILLP---NIPSVVNVPIVEILRSEFP--HIHF---KIENDAKCAALGEYYFGENKRMQTFI 148 (321)
T ss_dssp EEEEESSEECTT---SCCEEEBT---TBCCCCSCCHHHHHHHHCT--TSEE---EEEEHHHHHHHHHHHHSTTTTCSSEE
T ss_pred EEEEecccEECC---CCEEEeCC---CCccccCCCHHHHHHHHcC--CCCE---EEEchHHHHHHHHHHhCCCCCCCcEE
Confidence 999999999742 33333222 2333447999999988663 5775 9999999999999874 568899
Q ss_pred EEEEccccceeEEccCCCCcccCCC------CCCCCceeeeehhccccHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCc
Q 012386 248 AVILGTGTNAAYVERAHAIPKWHGL------LPKSGEMIFEKIISGMYLGEIVRRVLCRMAEEANFFGDTVPPKLKIPFI 321 (465)
Q Consensus 248 glIlGTG~Na~yie~~~~i~k~~~~------~~~~g~~~fEkm~SG~YLGEi~R~~l~~~~~~~~lf~~~~~~~l~~~~~ 321 (465)
.+++|||++++++.+++.+.+.++. ++.++.-|+|.++|+..|-+..+..... . . ++.+. .
T Consensus 149 ~l~~GtGiG~gii~~G~l~~G~~g~aGEiGh~~~~~~gclE~~~S~~al~~~~~~~~~~---~------~-~~~~~--~- 215 (321)
T 3r8e_A 149 LLALGTGVGSGVMMNGKLFIGGRGNGTEVGHMLTTRGKSLENQVGINHLIAYTHEQLAL---D------V-AKKSS--L- 215 (321)
T ss_dssp EEEESSSEEEEEEETTEECCCTTSCCCCGGGCBCTTSSBSHHHHSHHHHHHHHHHHHHH---C------T-TCCCS--G-
T ss_pred EEEECCceEEEEEECCEEecCCCCCCcccccccCCCCCcHHHhcCHHHHHHHHHHHhhc---c------C-ccccc--c-
Confidence 9999999999999999888776542 1222244999999999995554443221 1 0 11110 0
Q ss_pred cCchhhhhcccCCCcCHHHHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceE
Q 012386 322 LRTPHMSAMHHDTSPDLRVVGKKLKDILEISNTSLKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKS 401 (465)
Q Consensus 322 l~t~~ls~i~~d~s~~~~~~~~il~~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~aagiaaii~~~~~~~~~~~~~~~~ 401 (465)
. .+... ....+++. ++.++..|..+++++++++|.+|+++++.++| +
T Consensus 216 ------~---~~~~~---~~~~i~~~-----------a~~gD~~a~~~~~~~~~~La~~i~~l~~~ldP--------~-- 262 (321)
T 3r8e_A 216 ------H---TIAEL---SPKVIADH-----------AAQGDALALAVWADIGTIIGESLVNIVRVMDL--------N-- 262 (321)
T ss_dssp ------G---GCSSC---CHHHHHHH-----------HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHCC--------C--
T ss_pred ------c---ccccC---CHHHHHHH-----------HHcCCHHHHHHHHHHHHHHHHHHHHHHHHHCC--------C--
Confidence 0 00001 12333333 66778999999999999999999999999999 4
Q ss_pred EEEEecceeccchhHHHHHHHHHHHHhccCCCccEEEEEe---CChhHHHHHHHH
Q 012386 402 VIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHS---NDGSGIGAALLA 453 (465)
Q Consensus 402 ~V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l~~a---~Dgs~iGAAl~A 453 (465)
.|+++|++....+.|.+.+++.+++...+.....+.|+.+ +|++.+|||.++
T Consensus 263 ~IvlgG~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~i~~s~l~~~a~~~GAa~l~ 317 (321)
T 3r8e_A 263 NILLGGGISGAFDYFVPNLKKAMLEHLPTYYTDDMYIGKATLENDAGLLGAAGLI 317 (321)
T ss_dssp EEEEESGGGGGHHHHHHHHHHHHHHHSCHHHHTTCEEEECSSGGGHHHHHHHHHH
T ss_pred EEEEeChhcccchHHHHHHHHHHHHhcccccCCCCEEEEcCCCCcHHHHHHHHHH
Confidence 6889999999999999999999998865432345677776 789999999886
No 13
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=99.95 E-value=1.3e-25 Score=230.61 Aligned_cols=309 Identities=14% Similarity=0.130 Sum_probs=221.6
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHhhcCCC---CCCcceeccccccCCCCCcceeEEEEEeCCceEEEEEEEecCCcc
Q 012386 43 EMEEKCGTPIGKLRQVADAMTVEMHAGLASEG---GSKLKMLISYVDNLPTGDEKGLFYALDLGGTNFRVLRVQLGGREG 119 (465)
Q Consensus 43 ~~~~~~~~~~~~L~~i~~~~~~em~~gL~~~~---~s~~~Mlpt~v~~lP~G~E~G~~LaiDlGGTNlRv~~V~l~g~~~ 119 (465)
++.+...++...+.++.++|.+ +||-.+. .|+-=-=|+.+.-- .+.+++|+||+|||++|++++++.|+
T Consensus 38 ~la~~~gls~~tv~~~v~~L~~---~gli~~~~~~~~~~GR~~~~l~~~---~~~~~~lGIDiGgt~i~~~l~d~~G~-- 109 (380)
T 2hoe_A 38 ELAEELGLTKTTVGEIAKIFLE---KGIVVEEKDSPKGVGRPTKSLKIS---PNCAYVLGIEVTRDEIAACLIDASMN-- 109 (380)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHH---HTSEEEEECCC----CCCEEEEEC---GGGCEEEEEEECSSEEEEEEEETTCC--
T ss_pred HHHHHHCcCHHHHHHHHHHHHH---CCCEEeecCCCCCCCCCceEEEEc---cCCCeEEEEEECCCEEEEEEECCCCC--
Confidence 4455556888888888887766 5773321 11100011111100 23568999999999999999999884
Q ss_pred eeEEEEeeeeecCCCcccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCcceeeeeeecccccc-c-CCceEEeccCCcc
Q 012386 120 RVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSFPVRQT-S-IASGDLIKWTKGF 197 (465)
Q Consensus 120 ~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG~tfSfPv~q~-~-i~~g~Li~wtKgF 197 (465)
++.+. .++.|.. .+.+++++.+.+.|.+++++.+... .+...+|+++|+|++.. + +.....+.|.
T Consensus 110 -vl~~~--~~~~~~~---~~~~~~~~~l~~~i~~~~~~~~~~~----~~i~gigi~~pG~vd~~~g~v~~~~~l~w~--- 176 (380)
T 2hoe_A 110 -ILAHE--AHPLPSQ---SDREETLNVMYRIIDRAKDMMEKLG----SKLSALTVAAPGPIDTERGIIIDPRNFPLS--- 176 (380)
T ss_dssp -EEEEE--EEECCSS---CCHHHHHHHHHHHHHHHHHHHHHTT----CCCCEEEEEESSCEETTTTEECCCSSCTTB---
T ss_pred -EEEEE--EEccCCC---CCHHHHHHHHHHHHHHHHHhcCCCc----CcEEEEEEEeeccEECCCCEEeccCCCCCc---
Confidence 66543 4555543 3578999999999999998754221 35788999999999752 1 1111122454
Q ss_pred ccCCCCCCcHHHHHHHHHHHcCCCeeEEEEEechHHHhhcccccCC--ceEEEEEEccccceeEEccCCCCcccCCCC--
Q 012386 198 SIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHNK--DAIAAVILGTGTNAAYVERAHAIPKWHGLL-- 273 (465)
Q Consensus 198 ~~~~~~g~dv~~~L~~al~~~gl~v~v~alvNDtvatlla~~y~~~--~~~iglIlGTG~Na~yie~~~~i~k~~~~~-- 273 (465)
+.|+.+.|++.+ ++|| .+.||++++++++.|.+. ++.+.+++|||++++++.+++.+.++++..
T Consensus 177 ------~~~l~~~l~~~~---~~pV---~v~NDanaaalaE~~~g~~~~~~v~l~~GtGiG~giv~~G~l~~G~~g~aGE 244 (380)
T 2hoe_A 177 ------QIPLANLLKEKY---GIEV---WVENDADMGAVGEKWYTKRDDSFAWILTGKGIGAGIIIDGELYRGENGYAGE 244 (380)
T ss_dssp ------TSCHHHHHHHHH---CSEE---EEEEHHHHHHHHHHHHTTCCSCEEEEEESSSCEEEEEETTEECCCSSSCCCC
T ss_pred ------CCChHHHHHHHh---CCCE---EEechHHHHHHHHHHhCCCCCcEEEEEeCCceEEEEEECCEEeccCCCcccc
Confidence 799999999999 8986 999999999999987544 899999999999999999998887766521
Q ss_pred ------CCC-----Cc-eeeeehhccccHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccCchhhhhcccCCCcCHHHH
Q 012386 274 ------PKS-----GE-MIFEKIISGMYLGEIVRRVLCRMAEEANFFGDTVPPKLKIPFILRTPHMSAMHHDTSPDLRVV 341 (465)
Q Consensus 274 ------~~~-----g~-~~fEkm~SG~YLGEi~R~~l~~~~~~~~lf~~~~~~~l~~~~~l~t~~ls~i~~d~s~~~~~~ 341 (465)
++. |. -|+|.++|+..|-+ . .+.
T Consensus 245 iGh~~v~~~~~c~cG~~gclE~~~s~~~l~~------------------~-~~~-------------------------- 279 (380)
T 2hoe_A 245 IGYTRVFNGNEYVFLEDVCNENVVLKHVLSM------------------G-FSS-------------------------- 279 (380)
T ss_dssp GGGCEEECSSSEEEHHHHHCHHHHHHHHHHH------------------C-CC---------------------------
T ss_pred ccceEecCCCCCCCCCccHHHHHcCHHHHHH------------------H-HHH--------------------------
Confidence 111 11 17888888766522 0 000
Q ss_pred HHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEecceeccchhHHHHHH
Q 012386 342 GKKLKDILEISNTSLKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQ 421 (465)
Q Consensus 342 ~~il~~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~aagiaaii~~~~~~~~~~~~~~~~~V~idGsv~~~~~~f~~~l~ 421 (465)
++ +.++..+..|..+++++++++|.+|+++++.++| + .|+++|++....+.|.+.++
T Consensus 280 --v~-----------~~a~~gD~~a~~~l~~~~~~La~~i~~l~~~ldP--------~--~IvlgG~~~~~~~~l~~~l~ 336 (380)
T 2hoe_A 280 --LA-----------EARDSGDVRVKEYFDDIARYFSIGLLNLIHLFGI--------S--KIVIGGFFKELGENFLKKIK 336 (380)
T ss_dssp --TT-----------HHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHCC--------C--EEEEEEGGGGGHHHHHHHHH
T ss_pred --HH-----------HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC--------C--EEEEcCchhhhhHHHHHHHH
Confidence 00 1145567888999999999999999999999999 4 58899999988899999999
Q ss_pred HHHHHHhccCCCccEEEEEe---CChhHHHHHHHHH
Q 012386 422 STVKELLGEEVSETVVIEHS---NDGSGIGAALLAA 454 (465)
Q Consensus 422 ~~l~~~~~~~~~~~v~l~~a---~Dgs~iGAAl~Aa 454 (465)
+.+++...+. ..+.+..+ +|++.+|||.++.
T Consensus 337 ~~l~~~~~~~--~~~~i~~s~~~~~a~~~GAa~l~~ 370 (380)
T 2hoe_A 337 IEVETHLLYK--HSVDMSFSKVQEPVIAFGAAVHAL 370 (380)
T ss_dssp HHHHHHCSSS--CCCEEEECCCCSCHHHHHHHHHHH
T ss_pred HHHHHhcCCC--CCcEEEEcCCCCcHHHHHHHHHHH
Confidence 9998875433 34566554 7889999998863
No 14
>3vov_A Glucokinase, hexokinase; ROK, sugar kinase, transferase; 2.02A {Thermus thermophilus}
Probab=99.94 E-value=8.5e-26 Score=225.11 Aligned_cols=270 Identities=17% Similarity=0.171 Sum_probs=202.3
Q ss_pred eEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCCcccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCcceeeee
Q 012386 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFT 175 (465)
Q Consensus 96 ~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG~t 175 (465)
++|+||+|||++|++++++++ ++.+ .+++.|.. ..+++++.|.+.+.+++++.. .+...+|++
T Consensus 2 ~~lgiDiGgt~i~~~l~d~~~----~l~~--~~~~~~~~----~~~~~~~~i~~~i~~~~~~~~-------~~i~gigi~ 64 (302)
T 3vov_A 2 KVVGLDLGGTKIAAGVFDGKR----LLSK--VVVPTPKE----GGERVAEALAEAAERAEREAG-------VRGEAIGLG 64 (302)
T ss_dssp CEEEEEECSSEEEEEEECSSS----BSCC--EEEECCSS----CHHHHHHHHHHHHHHHHHHHT-------CCCSSEEEE
T ss_pred EEEEEEEcCCEEEEEEEeCCC----cEEE--EEEcCCCC----ChHHHHHHHHHHHHHHHhhcc-------CCceEEEEE
Confidence 589999999999999999863 3322 24566543 238899999999999987642 347889999
Q ss_pred eecccccccCCceEEeccCCccccCCCCCCcHHHHHHHHHHHcCCCeeEEEEEechHHHhhccccc----CCceEEEEEE
Q 012386 176 FSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH----NKDAIAAVIL 251 (465)
Q Consensus 176 fSfPv~q~~i~~g~Li~wtKgF~~~~~~g~dv~~~L~~al~~~gl~v~v~alvNDtvatlla~~y~----~~~~~iglIl 251 (465)
+|+|++.. ++.+...+ +++++.+.|+.+.|++.+ ++|| .+.||++++++++.+. +.++.+.+++
T Consensus 65 ~pG~vd~~---~g~v~~~~---~~~~w~~~~l~~~l~~~~---~~pv---~v~NDa~aaal~E~~~g~~~~~~~~~~l~~ 132 (302)
T 3vov_A 65 TPGPLDFR---RGVIRFAP---NIPGVQDFPIRRILEEAT---GRPV---FLENDANAAALAEHHLGAAQGEESSLYLTV 132 (302)
T ss_dssp ESSCEETT---TTEEC------CCTTCTTCCHHHHHHHHH---SSCE---EEEEHHHHHHHHHHHHSTTTTCSCEEEEEE
T ss_pred ecccEeCC---CCEEEcCC---CCCCcCCCChHHHHHHhh---CCCE---EEEechHHHHHHHHHhCCCCCCCCEEEEEE
Confidence 99999753 23332111 233444799999999999 8996 9999999999999874 5688999999
Q ss_pred ccccceeEEccCCCCcccCC---C-----CCCCC------ce-eeeehhccccHHHHHHHHHHHHhhcccCCCCCCCCCC
Q 012386 252 GTGTNAAYVERAHAIPKWHG---L-----LPKSG------EM-IFEKIISGMYLGEIVRRVLCRMAEEANFFGDTVPPKL 316 (465)
Q Consensus 252 GTG~Na~yie~~~~i~k~~~---~-----~~~~g------~~-~fEkm~SG~YLGEi~R~~l~~~~~~~~lf~~~~~~~l 316 (465)
|||++++++.+++.+.+.++ + ++++| .. |+|.++|+..|-+..+. .. + .
T Consensus 133 GtGiG~gii~~g~l~~G~~g~aGEiGh~~v~~~g~~c~cg~~gclE~~~s~~~l~~~~~~---~~-------~-~----- 196 (302)
T 3vov_A 133 STGIGGGVVLGGRVLRGERGQGGELGHLTLLPGGPACGCGLEGCLEALAAGRALERDATY---AF-------Q-R----- 196 (302)
T ss_dssp SSSEEEEEEETTEECCCTTSCTTCGGGSBSSTTCCBCTTSCBSBHHHHHSHHHHHHHHHH---HH-------T-S-----
T ss_pred CCceeEEEEECCEEeeCCCCCCccccceEecCCCCCCCCCCcchHHHHhCHHHHHHHHHH---hh-------C-C-----
Confidence 99999999999888776654 2 12222 22 99999999998443322 11 0 0
Q ss_pred CCCCccCchhhhhcccCCCcCHHHHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCC
Q 012386 317 KIPFILRTPHMSAMHHDTSPDLRVVGKKLKDILEISNTSLKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDG 396 (465)
Q Consensus 317 ~~~~~l~t~~ls~i~~d~s~~~~~~~~il~~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~aagiaaii~~~~~~~~~~~ 396 (465)
.++ ..++++. ++..+..|..++++++++++.+|+++++.++|
T Consensus 197 ----~~~-----------------~~~i~~~-----------a~~gd~~a~~~~~~~~~~l~~~i~~l~~~~~p------ 238 (302)
T 3vov_A 197 ----PVD-----------------TRELFRL-----------FQAGDPKAERLVLQAARYVGIGLASLVKAFDP------ 238 (302)
T ss_dssp ----CCC-----------------HHHHHHH-----------HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHCC------
T ss_pred ----CCC-----------------HHHHHHH-----------HHcCCHHHHHHHHHHHHHHHHHHHHHHHHHCC------
Confidence 011 1223332 56677889999999999999999999999999
Q ss_pred CCceEEEEEeccee-ccchhHHHHHHHHHHHHhccCCCccEEEEEe---CChhHHHHHHHHH
Q 012386 397 EKQKSVIALDGGLF-EHYTKFSACMQSTVKELLGEEVSETVVIEHS---NDGSGIGAALLAA 454 (465)
Q Consensus 397 ~~~~~~V~idGsv~-~~~~~f~~~l~~~l~~~~~~~~~~~v~l~~a---~Dgs~iGAAl~Aa 454 (465)
+ .|.++|++. ...+.|.+.+++.+++...+..... |+.+ +|++.+|||.++.
T Consensus 239 --~--~ivlgG~i~~~~~~~l~~~l~~~l~~~~~~~~~~~--i~~s~lg~~a~~~GAa~l~~ 294 (302)
T 3vov_A 239 --G--VVVLGGGVALNAPEGYWEALLEAYRRYLQGWEAPP--LRRARLGAEAGLLGAALTAY 294 (302)
T ss_dssp --S--EEEEESHHHHTSCHHHHHHHHHHHHHTTTTSCCCC--EEECSSGGGHHHHHHHHHHH
T ss_pred --C--EEEEeChhHhhhhHHHHHHHHHHHHHhcchhcCCc--EEEcCCCCcHHHHHHHHHHH
Confidence 4 688999999 8889999999999998765433333 5444 8999999998874
No 15
>4db3_A Glcnac kinase, N-acetyl-D-glucosamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; 1.95A {Vibrio vulnificus}
Probab=99.94 E-value=2.3e-25 Score=224.36 Aligned_cols=268 Identities=19% Similarity=0.210 Sum_probs=202.1
Q ss_pred eEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCCcccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCcceeeee
Q 012386 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFT 175 (465)
Q Consensus 96 ~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG~t 175 (465)
++|+||+|||++|++++++.|+ ++.+. +++.|.. +.+++++.|.+.+.++..+.+ ....+|++
T Consensus 25 ~~lgiDiGgt~i~~~l~d~~G~---il~~~--~~~~~~~----~~~~~~~~i~~~i~~~~~~~~--------~~~gigi~ 87 (327)
T 4db3_A 25 MYYGFDVGGTKIEFGAFNEKLE---RVATE--RVPTPTD----DYPLLLETIAGLVAKYDQEFA--------CEGKIGLG 87 (327)
T ss_dssp CEEEEEECSSEEEEEEECTTCC---EEEEE--EEECCTT----CHHHHHHHHHHHHHHHHHHHT--------SCCEEEEE
T ss_pred EEEEEEECCCEEEEEEEeCCCc---EEEEE--EecCCCC----CHHHHHHHHHHHHHHHHHhcC--------CccEEEEE
Confidence 7999999999999999999885 66543 4565542 578899999999999887643 25789999
Q ss_pred eecccccccCCceEEeccCCccccCCCCCCcHHHHHHHHHHHcCCCeeEEEEEechHHHhhccccc----CCceEEEEEE
Q 012386 176 FSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH----NKDAIAAVIL 251 (465)
Q Consensus 176 fSfPv~q~~i~~g~Li~wtKgF~~~~~~g~dv~~~L~~al~~~gl~v~v~alvNDtvatlla~~y~----~~~~~iglIl 251 (465)
+|+|++.. ++.+ .++ +++.+.+.|+.+.|++.| ++|| .|.||++++++++.+. +.++.+.+++
T Consensus 88 ~pG~vd~~---~g~v-~~~---~~~~~~~~~l~~~l~~~~---~~pV---~v~NDa~aaalgE~~~g~~~~~~~~~~l~~ 154 (327)
T 4db3_A 88 LPGMEDAD---DATV-LTV---NVPAAKGKPLRADLEAKI---GRSV---KIENDANCFALSEAWDEELQDAPSVMGLIL 154 (327)
T ss_dssp ESEEECTT---TCCE-EES---SSGGGTTSCHHHHHHHHH---SSCC---EEEEHHHHHHHHHHTSTTTTTCSEEEEEEE
T ss_pred eeccEeCC---CCEE-EcC---CCccccCCCHHHHHHHHH---CCCE---EEecchhHHHHHHHHhCCCCCCCcEEEEEe
Confidence 99999742 2222 122 122234799999999999 8997 9999999999999874 4688999999
Q ss_pred ccccceeEEccCCCCcccCC---C-----CCC----------CC------ce-eeeehhccccHHHHHHHHHHHHhhccc
Q 012386 252 GTGTNAAYVERAHAIPKWHG---L-----LPK----------SG------EM-IFEKIISGMYLGEIVRRVLCRMAEEAN 306 (465)
Q Consensus 252 GTG~Na~yie~~~~i~k~~~---~-----~~~----------~g------~~-~fEkm~SG~YLGEi~R~~l~~~~~~~~ 306 (465)
|||++++++.+++.+.+.++ + +++ .| .. |+|.++|+..|-+..+.. .
T Consensus 155 GtGiG~gii~~G~l~~G~~g~aGEiGh~~v~~~~~~~~~~~~~g~~C~cG~~gclE~~~S~~al~~~~~~~---~----- 226 (327)
T 4db3_A 155 GTGFGGGLIYEGKVFSGRNNVAGELGHMRLPLDAWFHLGDNAPLLGCGCGKKGCLDSYLSGRGFELLYAHY---Y----- 226 (327)
T ss_dssp SSSEEEEEEETTEECCCTTSCTTCGGGSBCCHHHHHHTCTTCCCCBCTTSCBSBGGGTSSHHHHHHHHHHH---H-----
T ss_pred CccceEEEEECCEEeecCCCcCcccccEEeccccccccccccCCCcCCCCCcchhHhhhCHHHHHHHHHHh---c-----
Confidence 99999999999887766544 2 121 22 22 999999999984433221 0
Q ss_pred CCCCCCCCCCCCCCccCchhhhhcccCCCcCHHHHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012386 307 FFGDTVPPKLKIPFILRTPHMSAMHHDTSPDLRVVGKKLKDILEISNTSLKMRKLVVELCDIVATRGARLSAAGIVGILK 386 (465)
Q Consensus 307 lf~~~~~~~l~~~~~l~t~~ls~i~~d~s~~~~~~~~il~~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~aagiaaii~ 386 (465)
.. .++ ...+++. ++..+..|..+++++++++|.+|+++++
T Consensus 227 ------~~------~~~-----------------~~~i~~~-----------a~~gD~~a~~~~~~~~~~La~~i~~l~~ 266 (327)
T 4db3_A 227 ------GE------EKK-----------------AIDIIKA-----------NAAGDEKAAEHVERFMELLAICFGNIFT 266 (327)
T ss_dssp ------SC------CCC-----------------HHHHHHH-----------HHHTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------CC------CCC-----------------HHHHHHH-----------HHcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 011 1223332 6678899999999999999999999999
Q ss_pred HhCCCCcCCCCCceEEEEEecceeccchhHHHHHHHHHHHHhccCCCccEEEEEe---CChhHHHHHHHH
Q 012386 387 KLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHS---NDGSGIGAALLA 453 (465)
Q Consensus 387 ~~~~~~~~~~~~~~~~V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l~~a---~Dgs~iGAAl~A 453 (465)
.++| + .|.++|++... +.|.+.+++.+++.+.+. ...++|+.+ +|++.+|||.++
T Consensus 267 ~l~p--------~--~IvlgGgi~~~-~~l~~~l~~~l~~~~~~~-~~~~~i~~s~lg~~a~~~GAa~l~ 324 (327)
T 4db3_A 267 ANDP--------H--VVALGGGLSNF-ELIYEEMPKRVPKYLLSV-AKCPKIIKAKHGDSGGVRGAAFLN 324 (327)
T ss_dssp HHCC--------S--EEEEESGGGGC-THHHHHHHHHGGGGSCTT-CCCCEEEECSCGGGHHHHHHHHTT
T ss_pred HhCC--------C--EEEEeCcccch-HHHHHHHHHHHHHHhccc-cCCCEEEECCCCCcHHHHHHHHHH
Confidence 9999 4 68899999875 678899999998876543 245677776 899999999765
No 16
>4htl_A Beta-glucoside kinase; structural genomics, sugar kinase, ROK family, PSI-biology, center for structural genomics, MCSG, transferase; HET: MSE; 1.64A {Listeria monocytogenes}
Probab=99.93 E-value=8.7e-25 Score=217.22 Aligned_cols=266 Identities=15% Similarity=0.185 Sum_probs=192.9
Q ss_pred eEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCCcccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCcceeeee
Q 012386 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFT 175 (465)
Q Consensus 96 ~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG~t 175 (465)
++|+||+|||++|++++++.|+ ++.+. ++++|.. +.+++++.+.+ ++.+. .+...+|++
T Consensus 5 ~~lgiDiGgt~i~~~l~d~~G~---il~~~--~~~~~~~----~~~~~~~~i~~----~~~~~--------~~i~gigi~ 63 (297)
T 4htl_A 5 KIAAFDIGGTALKMGVVLPHGE---IILTK--SAEISGS----DGDQILAEMKV----FLAEN--------TDVTGIAVS 63 (297)
T ss_dssp CEEEEEECSSEEEEEEECTTSC---EEEEE--EEECSTT----CHHHHHHHHHH----HHHTC--------TTCCEEEEE
T ss_pred EEEEEEeCCCeEEEEEECCCCC---EEEEE--EecCCCC----CHHHHHHHHHH----HHhhc--------CCeeEEEEe
Confidence 6899999999999999999885 66543 4555432 34556555544 44331 247889999
Q ss_pred eecccccccCCceEEeccCCccccCCCCCCcHHHHHHHHHHHcCCCeeEEEEEechHHHhhccccc----CCceEEEEEE
Q 012386 176 FSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH----NKDAIAAVIL 251 (465)
Q Consensus 176 fSfPv~q~~i~~g~Li~wtKgF~~~~~~g~dv~~~L~~al~~~gl~v~v~alvNDtvatlla~~y~----~~~~~iglIl 251 (465)
+|+|++.. ++.+..-+ +++++.+.|+.+.|++.+ ++|| .+.||+++.++++++. +.++.+.+++
T Consensus 64 ~pG~vd~~---~g~v~~~~---~l~~w~~~~l~~~l~~~~---~~pV---~v~NDa~aaal~E~~~g~~~~~~~~~~l~~ 131 (297)
T 4htl_A 64 APGYVNPK---TGLITMGG---AIRRFDNFNLKEWLEAET---GLPV---AIENDANCALLAEKWLGKGQDLDDFLCLTI 131 (297)
T ss_dssp ESSEECTT---TCEEEECT---TCGGGTTEEHHHHHHHHH---CSCE---EEEEHHHHHHHHHHHHSTTTTCSSEEEEEE
T ss_pred cCcceeCC---CCEEEeCC---CCCCccCCCHHHHHHHHH---CcCE---EEecHHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence 99999752 33332211 233344799999999999 9996 9999999999999873 5689999999
Q ss_pred ccccceeEEccCCCCcccCC---C-----CCCC-----CceeeeehhccccHHHHHHHHHHHHhhcccCCCCCCCCCCCC
Q 012386 252 GTGTNAAYVERAHAIPKWHG---L-----LPKS-----GEMIFEKIISGMYLGEIVRRVLCRMAEEANFFGDTVPPKLKI 318 (465)
Q Consensus 252 GTG~Na~yie~~~~i~k~~~---~-----~~~~-----g~~~fEkm~SG~YLGEi~R~~l~~~~~~~~lf~~~~~~~l~~ 318 (465)
|||++++++.+++.+.+.++ + ++++ +.-|+|.++|+..|-+..+.. . + . +.
T Consensus 132 GtGiG~giv~~G~l~~G~~g~aGEiGh~~~~~~~~~~~~~~~le~~~s~~~l~~~~~~~---~-------~-~-~~---- 195 (297)
T 4htl_A 132 GTGIGGGIFSNGELVRGGRFRAGEFGYMFSERPGAFRPGKYTLNETTTMLVLRRQYAEL---T-------G-R-PL---- 195 (297)
T ss_dssp SSSEEEEEEETTEECCCTTSCCCCGGGSBSSCCCSSCGGGGBHHHHSSHHHHHHHHHHH---H-------C-C-CG----
T ss_pred CcceEEEEEECCEEEecCCCCcccccceEecCCCCcCcccCcHHHhccHHHHHHHHHHH---h-------c-C-Cc----
Confidence 99999999999988876654 2 1222 223899999999884433221 1 0 0 10
Q ss_pred CCccCchhhhhcccCCCcCHHHHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCC
Q 012386 319 PFILRTPHMSAMHHDTSPDLRVVGKKLKDILEISNTSLKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEK 398 (465)
Q Consensus 319 ~~~l~t~~ls~i~~d~s~~~~~~~~il~~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~aagiaaii~~~~~~~~~~~~~ 398 (465)
..+ ....+++. ++..+..|..+++++++++|.+|+++++.++|
T Consensus 196 -~~~-----------------~~~~i~~~-----------a~~gd~~a~~~~~~~~~~La~~i~~l~~~~~p-------- 238 (297)
T 4htl_A 196 -EEI-----------------TGEEIFAN-----------YDAHDAVSERLITEFYTGICTGLYNLIYLFDP-------- 238 (297)
T ss_dssp -GGC-----------------CHHHHHHH-----------HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHCC--------
T ss_pred -cCC-----------------CHHHHHHH-----------HHcCCHHHHHHHHHHHHHHHHHHHHHHHHhCC--------
Confidence 001 11233332 56778899999999999999999999999999
Q ss_pred ceEEEEEecceeccchhHHHHHHHHHHHHhccCCCccEEEEEe---CChhHHHHHHHHH
Q 012386 399 QKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHS---NDGSGIGAALLAA 454 (465)
Q Consensus 399 ~~~~V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l~~a---~Dgs~iGAAl~Aa 454 (465)
+ .|.++|++... +.|.+.+++.+++... ..+.|+.+ +|++.+|||.++.
T Consensus 239 ~--~IvlgGgi~~~-~~~~~~l~~~l~~~~~----~~~~i~~s~lg~~a~~~GAa~l~~ 290 (297)
T 4htl_A 239 T--HIFIGGGITSR-PTFIAELKHHMESFGL----RDTIIETATHKNQAGLLGAVYHFL 290 (297)
T ss_dssp S--EEEEESGGGGS-TTHHHHHHHHHTTTCC----TTCEEEECSCTTTHHHHHHHHHHH
T ss_pred C--EEEEeCccccc-HHHHHHHHHHHHHhcc----CCCeEEECCcCChHHHHhHHHHHH
Confidence 4 68899999975 7899999998876532 34567666 8999999998874
No 17
>2ap1_A Putative regulator protein; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.90A {Salmonella typhimurium} SCOP: c.55.1.10 c.55.1.10
Probab=99.93 E-value=8e-25 Score=219.91 Aligned_cols=269 Identities=19% Similarity=0.238 Sum_probs=197.5
Q ss_pred eeEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCCcccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCcceeee
Q 012386 95 GLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGF 174 (465)
Q Consensus 95 G~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG~ 174 (465)
+++|+||+|||++|++++++.|+ ++.+. +++.+.. +.+++++.|.+.+.++..+.+ ....+|+
T Consensus 24 ~~~lgiDiGgt~i~~~l~d~~g~---il~~~--~~~~~~~----~~~~~~~~i~~~i~~~~~~~~--------~i~~igi 86 (327)
T 2ap1_A 24 AMYYGFDIGGTKIALGVFDSTRR---LQWEK--RVPTPHT----SYSAFLDAVCELVEEADQRFG--------VKGSVGI 86 (327)
T ss_dssp CEEEEEEECSSEEEEEEEETTCC---EEEEE--EEECCCS----CHHHHHHHHHHHHHHHHHHHT--------SCCEEEE
T ss_pred ceEEEEEECCCEEEEEEEeCCCC---EEEEE--EecCCCC----CHHHHHHHHHHHHHHHHHhcC--------CccEEEE
Confidence 47999999999999999999884 66443 4555432 467899999999988876542 2567999
Q ss_pred eeecccccccCCceEEeccCCccccCCCCCCcHHHHHHHHHHHcCCCeeEEEEEechHHHhhccccc----CCceEEEEE
Q 012386 175 TFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH----NKDAIAAVI 250 (465)
Q Consensus 175 tfSfPv~q~~i~~g~Li~wtKgF~~~~~~g~dv~~~L~~al~~~gl~v~v~alvNDtvatlla~~y~----~~~~~iglI 250 (465)
++|+|++.. .+.++ ++ +.+.+.+.|+.+.|++.+ ++|| .|.||++++++++.+. +.++.+.++
T Consensus 87 ~~pG~vd~~---~g~v~-~~---~~~~~~~~~l~~~l~~~~---~~pv---~v~NDa~aaalgE~~~g~~~~~~~~v~l~ 153 (327)
T 2ap1_A 87 GIPGMPETE---DGTLY-AA---NVPAASGKPLRADLSARL---DRDV---RLDNDANCFALSEAWDDEFTQYPLVMGLI 153 (327)
T ss_dssp EESSBSCCT---TSCCB-CT---TCTTTTTSCHHHHHHHHH---TSCE---EEEEHHHHHHHHHHTSTTGGGCSEEEEEE
T ss_pred EeeeeEECC---CCEEE-cc---CCCccCCCChHHHHHHHH---CCCE---EEecHHHHHHHHHHHhCcCCCCCcEEEEE
Confidence 999999752 23332 22 333445799999999999 8996 9999999999999865 467899999
Q ss_pred EccccceeEEccCCCCcccCC---C-----CCCC----------------Cc-eeeeehhccccHHHHHHHHHHHHhhcc
Q 012386 251 LGTGTNAAYVERAHAIPKWHG---L-----LPKS----------------GE-MIFEKIISGMYLGEIVRRVLCRMAEEA 305 (465)
Q Consensus 251 lGTG~Na~yie~~~~i~k~~~---~-----~~~~----------------g~-~~fEkm~SG~YLGEi~R~~l~~~~~~~ 305 (465)
+|||++++++.+++.+.++++ + +++. |. -|+|.++|+..|-+..+. ..
T Consensus 154 ~GtGiG~giv~~G~l~~G~~g~aGE~Gh~~~~~~~~~~~~~~~~g~~c~cG~~gcle~~~s~~~l~~~~~~---~~---- 226 (327)
T 2ap1_A 154 LGTGVGGGLVLNGKPITGQSYITGEFGHMRLPVDALTLMGFDFPLRRCGCGQMGCIENYLSGRGFAWLYQH---YY---- 226 (327)
T ss_dssp ESSSEEEEEEETTEEECCTTSCTTCGGGSBCCHHHHHHHCTTSCCCBCTTSCBSBTHHHHSHHHHHHHHHH---HH----
T ss_pred ECCcEEEEEEECCEEeecCCCcccccccEEEecCcccccccccCCCcCCCCchhhHHHHhCHHHHHHHHHH---hc----
Confidence 999999999999887766553 1 1111 22 299999999887443222 10
Q ss_pred cCCCCCCCCCCCCCCccCchhhhhcccCCCcCHHHHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012386 306 NFFGDTVPPKLKIPFILRTPHMSAMHHDTSPDLRVVGKKLKDILEISNTSLKMRKLVVELCDIVATRGARLSAAGIVGIL 385 (465)
Q Consensus 306 ~lf~~~~~~~l~~~~~l~t~~ls~i~~d~s~~~~~~~~il~~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~aagiaaii 385 (465)
+ . + . ....+++. ++..+..|..+++++++++|.+|++++
T Consensus 227 ---~-~-~--------~-----------------~~~~i~~~-----------a~~gd~~a~~il~~~~~~La~~i~~l~ 265 (327)
T 2ap1_A 227 ---D-Q-S--------L-----------------QAPEIIAL-----------WEQGDEQAHAHVERYLDLLAVCLGNIL 265 (327)
T ss_dssp ---C-C-C--------C-----------------CHHHHHHH-----------HHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---C-C-C--------C-----------------CHHHHHHH-----------HHcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 0 0 11223332 566778999999999999999999999
Q ss_pred HHhCCCCcCCCCCceEEEEEecceeccchhHHHHHHHHHHHHhccCCCccEEEEEe---CChhHHHHHHHH
Q 012386 386 KKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHS---NDGSGIGAALLA 453 (465)
Q Consensus 386 ~~~~~~~~~~~~~~~~~V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l~~a---~Dgs~iGAAl~A 453 (465)
+.++| + .|+++|++....+.|.+ +++.+++.+.+ ....+.|+.+ +|++.+|||.++
T Consensus 266 ~~l~p--------~--~IvlgG~i~~~~~~~~~-l~~~l~~~~~~-~~~~~~i~~s~~~~~a~~~GAa~la 324 (327)
T 2ap1_A 266 TIVDP--------D--LLVIGGGLSNFTAITTQ-LAERLPRHLLP-VARAPRIERARHGDAGGMRGAAFLH 324 (327)
T ss_dssp HHHCC--------S--EEEEESGGGGSTHHHHS-SGGGSGGGSCT-TCCCCEEEECSCTTTHHHHHHHHTT
T ss_pred HHhCC--------C--EEEEeChhhcchhHHHH-HHHHHHHhhcc-ccCCCEEEEcCCCCcHHHHHHHHHH
Confidence 99999 4 58899999987765554 88888776543 3345677775 688999999765
No 18
>2yhw_A Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase; transferase, sialic acid, mannac, ROK family; HET: BM3 2PE; 1.64A {Homo sapiens} PDB: 2yhy_A* 2yi1_A* 3eo3_A
Probab=99.93 E-value=5e-24 Score=215.61 Aligned_cols=289 Identities=20% Similarity=0.205 Sum_probs=202.9
Q ss_pred ceeEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCCcccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCcceee
Q 012386 94 KGLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELG 173 (465)
Q Consensus 94 ~G~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG 173 (465)
..++|+||+|||++|++++++.|+ ++.+. .++.| .+.+++++.+.+.+.+++.+.... ..+...+|
T Consensus 29 ~~~~lgiDiGgt~i~~~l~d~~G~---il~~~--~~~~~-----~~~~~~~~~i~~~i~~~~~~~~~~----~~~i~gig 94 (343)
T 2yhw_A 29 TLSALAVDLGGTNLRVAIVSMKGE---IVKKY--TQFNP-----KTYEERINLILQMCVEAAAEAVKL----NCRILGVG 94 (343)
T ss_dssp EEEEEEEEECSSEEEEEEEETTSC---EEEEE--EEECC-----SSHHHHHHHHHHHHHHHHHHHHHT----TEEEEEEE
T ss_pred CcEEEEEEECCCEEEEEEECCCCc---EEEEE--EEcCC-----CCHHHHHHHHHHHHHHHHHhcccc----cCceEEEE
Confidence 468999999999999999999884 66443 34444 246788999999999998764321 13467899
Q ss_pred eeeecccccccCCceEEeccCCccccCCCCCCcHHHHHHHHHHHcCCCeeEEEEEechHHHhhccccc----CCceEEEE
Q 012386 174 FTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH----NKDAIAAV 249 (465)
Q Consensus 174 ~tfSfPv~q~~i~~g~Li~wtKgF~~~~~~g~dv~~~L~~al~~~gl~v~v~alvNDtvatlla~~y~----~~~~~igl 249 (465)
+++|+|++.. ++.++.-+. ..+++.+.|+.+.|++.+ ++|| .|.||++++++++.+. +.++.+.+
T Consensus 95 i~~pG~vd~~---~g~v~~~~~--~~~~w~~~~l~~~l~~~~---~~pv---~v~NDa~aaal~E~~~g~~~~~~~~v~i 163 (343)
T 2yhw_A 95 ISTGGRVNPR---EGIVLHSTK--LIQEWNSVDLRTPLSDTL---HLPV---WVDNDGNCAALAERKFGQGKGLENFVTL 163 (343)
T ss_dssp EEESSEEETT---TTEEEECCT--TSSSCSSEECHHHHHHHH---CSCE---EEEEHHHHHHHHHHHTSTTTTCSCEEEE
T ss_pred EecccCEeCC---CCEEEeCCc--CCCCCcCCCHHHHHHHHH---CCCE---EEechhHHHHHHHHHhCCCCCCCcEEEE
Confidence 9999999752 233331110 012344789999999999 8996 9999999999999864 45789999
Q ss_pred EEccccceeEEccCCCCcccCC---C-----CCCC------Cce-eeeehhccccHHHHHHHHHHHHhhcccCCCCCCCC
Q 012386 250 ILGTGTNAAYVERAHAIPKWHG---L-----LPKS------GEM-IFEKIISGMYLGEIVRRVLCRMAEEANFFGDTVPP 314 (465)
Q Consensus 250 IlGTG~Na~yie~~~~i~k~~~---~-----~~~~------g~~-~fEkm~SG~YLGEi~R~~l~~~~~~~~lf~~~~~~ 314 (465)
++|||++++++.+++.+.+.++ + +++. |.. |+|.++|+..|-+.++... ... +.
T Consensus 164 ~~GtGiG~gii~~G~l~~G~~g~aGEiGh~~~~~~g~~c~cG~~gclE~~~s~~al~~~~~~~~---~~~--------~~ 232 (343)
T 2yhw_A 164 ITGTGIGGGIIHQHELIHGSSFCAAELGHLVVSLXGPDCSCGSHGCIEAYASGMALQREAKKLH---DED--------LL 232 (343)
T ss_dssp EESSSEEEEEEETTEECCCTTSCTTCGGGCBCCC--CBCTTSCBSBHHHHHSHHHHHHHHHHHH---HTT--------CS
T ss_pred EECCCEEEEEEECCEEecCCCCcccccCCEEEccCCCcCCCCCCCcHHHhcCHHHHHHHHHHhh---ccc--------cc
Confidence 9999999999999887766543 1 1222 222 9999999999855444322 111 00
Q ss_pred CCCCCCccCchhhhhcccCCCcCHHHHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcC
Q 012386 315 KLKIPFILRTPHMSAMHHDTSPDLRVVGKKLKDILEISNTSLKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVR 394 (465)
Q Consensus 315 ~l~~~~~l~t~~ls~i~~d~s~~~~~~~~il~~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~aagiaaii~~~~~~~~~ 394 (465)
.+.. .... .+. +. ....+++. ++..+..|..+++++++++|.+|+++++.++|
T Consensus 233 ~~~~-~~~~--------~~~--~~-~~~~v~~~-----------a~~gd~~a~~il~~~~~~La~~i~~l~~~l~P---- 285 (343)
T 2yhw_A 233 LVEG-MSVP--------KDE--AV-GALHLIQA-----------AKLGNAKAQSILRTAGTALGLGVVNILHTMNP---- 285 (343)
T ss_dssp CCTT-CCC--------------CC-CHHHHHHH-----------HHTTCHHHHHHHHHHHHHHHHHHHHHHHHTCC----
T ss_pred cccc-cccc--------ccc--cC-CHHHHHHH-----------HHcCCHHHHHHHHHHHHHHHHHHHHHHHHhCC----
Confidence 0000 0000 000 00 12333333 66788999999999999999999999999998
Q ss_pred CCCCceEEEEEecceeccchhHHHHHHHHHHHHhccCCCccEEEEEe--CChhHHHHHHHHHH
Q 012386 395 DGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHS--NDGSGIGAALLAAS 455 (465)
Q Consensus 395 ~~~~~~~~V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l~~a--~Dgs~iGAAl~Aa~ 455 (465)
+ .|+++|++. +.|.+.+++.+++...+. ...+.+..+ +|.+.+|||.++.-
T Consensus 286 ----~--~IvlgG~i~---~~~~~~l~~~l~~~~~~~-~~~~~i~~s~~~~~~~~GAa~l~~~ 338 (343)
T 2yhw_A 286 ----S--LVILSGVLA---SHYIHIVKDVIRQQALSS-VQDVDVVVSDLVDPALLGAASMVLD 338 (343)
T ss_dssp ----S--EEEEESTTH---HHHHHHHHHHHHHHSCGG-GTTCEEEECCCSCHHHHHHHHHHHH
T ss_pred ----C--EEEEeCCcH---HHHHHHHHHHHHHhcccc-cCCcEEEEccCCCchHHHHHHHHHH
Confidence 4 588999996 578899999888765432 234566665 77889999988743
No 19
>3htv_A D-allose kinase, allokinase; NP_418508.1, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: MSE; 1.95A {Escherichia coli k-12}
Probab=99.92 E-value=6.4e-24 Score=212.39 Aligned_cols=270 Identities=18% Similarity=0.168 Sum_probs=186.2
Q ss_pred cceeEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCCcccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCccee
Q 012386 93 EKGLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQREL 172 (465)
Q Consensus 93 E~G~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~l 172 (465)
+.+++|+||+|||++|++++++.|+ ++.+. +++.|+. ..+++++.|.+.+.+++++.+ .+...+
T Consensus 5 ~~~~~lgiDiGgt~i~~~l~d~~G~---il~~~--~~~~~~~----~~~~~~~~i~~~i~~~~~~~~-------~~i~gi 68 (310)
T 3htv_A 5 QHNVVAGVDMGATHIRFCLRTAEGE---TLHCE--KKRTAEV----IAPGLVSGIGEMIDEQLRRFN-------ARCHGL 68 (310)
T ss_dssp CEEEEEEEEECSSEEEEEEEETTSC---EEEEE--EEEHHHH----HTTCHHHHHHHHHHHHHHHHT-------EEEEEE
T ss_pred CCCEEEEEEeCCCEEEEEEECCCCC---EEEEE--EecCccc----cHHHHHHHHHHHHHHHHHhcC-------CCeeEE
Confidence 4578999999999999999999884 66543 3444422 356788999999988887653 136889
Q ss_pred eeeeecccccc-c-CCceEEeccCCccccCCCCCCcHHHHHHHHHHHcCCCeeEEEEEechHHHhhcccc---cCCceEE
Q 012386 173 GFTFSFPVRQT-S-IASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRY---HNKDAIA 247 (465)
Q Consensus 173 G~tfSfPv~q~-~-i~~g~Li~wtKgF~~~~~~g~dv~~~L~~al~~~gl~v~v~alvNDtvatlla~~y---~~~~~~i 247 (465)
|+++|+|++.. + +.....+.|.. ..+.|+.+.|++.+ ++|| .+.||++++++++.+ .+.++.+
T Consensus 69 gi~~pG~vd~~~g~v~~~~~l~~~~------~~~~~l~~~l~~~~---~~pv---~v~NDanaaa~~e~~~~~~~~~~~~ 136 (310)
T 3htv_A 69 VMGFPALVSKDKRTIISTPNLPLTA------ADLYDLADKLENTL---NCPV---EFSRDVNLQLSWDVVENRLTQQLVL 136 (310)
T ss_dssp EEEESSCBCTTSSCBCSCCSSSCCH------HHHTTHHHHHHHHH---TSCE---EEEEHHHHHHHHHHHHTTCTTSCEE
T ss_pred EEeccccEeCCCCEEEeCCCCCCcc------ccCccHHHHHHHHh---CCCE---EEeeHHHHHHHHHHhhcccCCceEE
Confidence 99999999753 2 33334445541 01268999999999 8996 999999999887643 3567899
Q ss_pred EEEEccccceeEEccCCCCcccCC---CC-----CCC------Cce-eeeehhccccHHHHHHHHHHHHhhcccCCCCCC
Q 012386 248 AVILGTGTNAAYVERAHAIPKWHG---LL-----PKS------GEM-IFEKIISGMYLGEIVRRVLCRMAEEANFFGDTV 312 (465)
Q Consensus 248 glIlGTG~Na~yie~~~~i~k~~~---~~-----~~~------g~~-~fEkm~SG~YLGEi~R~~l~~~~~~~~lf~~~~ 312 (465)
.+++|||++++++.+++.+.+.++ ++ ++. |+. |+|.++|+..|- |..- + .
T Consensus 137 ~v~~GtGiG~gii~~G~l~~G~~g~aGEiGh~~v~~~g~~C~cG~~GclE~~~S~~al~---~~~~-----~------~- 201 (310)
T 3htv_A 137 AAYLGTGMGFAVWMNGAPWTGAHGVAGELGHIPLGDMTQHCACGNPGCLETNCSGMALR---RWYE-----Q------Q- 201 (310)
T ss_dssp EEEESSSEEEEEEETTEEECCSSSCCCC---------------------CCSSSHHHHH---HHHT-----T------S-
T ss_pred EEEeceeEEEEEEECCEEeecCCCCceeCcceEeCCCCCcCCCCCCceehhhhCHHHHH---HHHH-----h------c-
Confidence 999999999999999988877654 21 222 222 999999999883 3211 0 0
Q ss_pred CCCCCCCCccCchhhhhcccCCCcCHHHHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 012386 313 PPKLKIPFILRTPHMSAMHHDTSPDLRVVGKKLKDILEISNTSLKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRDT 392 (465)
Q Consensus 313 ~~~l~~~~~l~t~~ls~i~~d~s~~~~~~~~il~~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~aagiaaii~~~~~~~ 392 (465)
.. .++.+.+ ++. + ..++.++.++++. |.+|+++++.++|
T Consensus 202 ~~------~~~~~~~-----------------~~~-----------~-~~d~~~~~~~~~~----a~~la~l~~~~dP-- 240 (310)
T 3htv_A 202 PR------NYPLRDL-----------------FVH-----------A-ENAPFVQSLLENA----ARAIATSINLFDP-- 240 (310)
T ss_dssp CC------SSCGGGH-----------------HHH-----------H-TTCHHHHHHHHHH----HHHHHHHHHHHCC--
T ss_pred cC------CCCHHHH-----------------HHH-----------H-cCChHHHHHHHHH----HHHHHHHHHhhCC--
Confidence 00 1111111 111 1 1234455555554 4578889999999
Q ss_pred cCCCCCceEEEEEecceeccchhHHHHHHHHHHHHhcc-CCCccEEEEEe---CChhHHHHHHHHH
Q 012386 393 VRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGE-EVSETVVIEHS---NDGSGIGAALLAA 454 (465)
Q Consensus 393 ~~~~~~~~~~V~idGsv~~~~~~f~~~l~~~l~~~~~~-~~~~~v~l~~a---~Dgs~iGAAl~Aa 454 (465)
+ .|+++|++.+..+.|.+.+.+.+++.+.. .....++|+.+ +|++.+|||.++.
T Consensus 241 ------~--~IvlgG~v~~~~~~~~~~l~~~l~~~~~~~~~~~~~~i~~s~lg~~ag~~GAa~la~ 298 (310)
T 3htv_A 241 ------D--AVILGGGVMDMPAFPRETLVAMTQKYLRRPLPHQVVRFIAASSSDFNGAQGAAILAH 298 (310)
T ss_dssp ------S--EEEEECTTTTSTTCCHHHHHHHHHHTSCTTTTTTTCEEEECCCCTTHHHHHHHHHHH
T ss_pred ------C--EEEEeCchhccchhHHHHHHHHHHHHhhcccccCCcEEEEcCCCCcHHHHHHHHHHH
Confidence 4 68899999999888899999999887642 12346777776 8999999998873
No 20
>2aa4_A Mannac kinase, putative N-acetylmannosamine kinase; sugar methabolism, structural genomics, PSI, protein structure initiative; 2.20A {Escherichia coli} SCOP: c.55.1.10 c.55.1.10
Probab=99.92 E-value=3.5e-24 Score=211.32 Aligned_cols=264 Identities=18% Similarity=0.169 Sum_probs=189.7
Q ss_pred eEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCCcccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCcceeeee
Q 012386 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFT 175 (465)
Q Consensus 96 ~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG~t 175 (465)
++|+||+|||++|++++++.|+ ++.+. +++.+.. .+.+++++.|.+.+.+++.+ ...+|++
T Consensus 2 ~~lgidiggt~~~~~l~d~~g~---il~~~--~~~~~~~---~~~~~~~~~i~~~i~~~~~~-----------~~~igi~ 62 (289)
T 2aa4_A 2 TTLAIDIGGTKLAAALIGADGQ---IRDRR--ELPTPAS---QTPEALRDALSALVSPLQAH-----------AQRVAIA 62 (289)
T ss_dssp CEEEEEECSSEEEEEEECTTCC---EEEEE--EEECCSS---CCHHHHHHHHHHHHTTTGGG-----------CSEEEEE
T ss_pred eEEEEEeCCCEEEEEEECCCCC---EEEEE--EecCCCC---CCHHHHHHHHHHHHHHHHhh-----------CCEEEEE
Confidence 4799999999999999999884 66543 4555432 24778888888777666432 2369999
Q ss_pred eecccccccCCceEEeccCCccccCCCCCCcHHHHHHHHHHHcCCCeeEEEEEechHHHhhcccccCCc---eEEEEEEc
Q 012386 176 FSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHNKD---AIAAVILG 252 (465)
Q Consensus 176 fSfPv~q~~i~~g~Li~wtKgF~~~~~~g~dv~~~L~~al~~~gl~v~v~alvNDtvatlla~~y~~~~---~~iglIlG 252 (465)
+|+|++.. .+.++ ++- +++++.+.|+.+.|++.+ ++|| .+.||++++++++++.+.. +.+.+++|
T Consensus 63 ~pG~vd~~---~g~v~-~~~--~~~~w~~~~l~~~l~~~~---~~pv---~v~NDa~aaa~~e~~~g~~~~~~~v~l~~G 130 (289)
T 2aa4_A 63 STGIIRDG---SLLAL-NPH--NLGGLLHFPLVKTLEQLT---NLPT---IAINDAQAAAWAEFQALDGDITDMVFITVS 130 (289)
T ss_dssp ESSEEETT---EEECS-SGG--GGGGGTTCCHHHHHHHHH---CSCE---EEEEHHHHHHHHHHHTSCTTCCCEEEEEES
T ss_pred eccceeCC---CCEEE-eCC--CCCcccCCChHHHHHHHH---CCCE---EEechHHHHHHHHHHhCCCCCceEEEEEeC
Confidence 99999752 22221 111 122334799999999999 8996 9999999999999865321 89999999
Q ss_pred cccceeEEccCCCCcccCC---C-----CCCC------Cce-eeeehhccccHHHHHHHHHHHHhhcccCCCCCCCCCCC
Q 012386 253 TGTNAAYVERAHAIPKWHG---L-----LPKS------GEM-IFEKIISGMYLGEIVRRVLCRMAEEANFFGDTVPPKLK 317 (465)
Q Consensus 253 TG~Na~yie~~~~i~k~~~---~-----~~~~------g~~-~fEkm~SG~YLGEi~R~~l~~~~~~~~lf~~~~~~~l~ 317 (465)
||++++++.+++.+.+.++ + +++. |+. |+|.++|+..|-+ .. .. +.
T Consensus 131 tGiG~gii~~G~l~~G~~g~aGE~Gh~~~~~~g~~c~cG~~gcle~~~s~~~l~~---~~-----~~-----------~~ 191 (289)
T 2aa4_A 131 TGVGGGVVSGCKLLTGPGGLAGHIGHTLADPHGPVCGCGRTGCVEAIASGRGIAA---AA-----QG-----------EL 191 (289)
T ss_dssp SSEEEEEEETTEEECCTTSCCCCGGGSBSCTTSCBCTTSCBSBHHHHHSHHHHHH---TC-----CG-----------GG
T ss_pred ccEEEEEEECCEEeeCCCCCCccCCcEEECCCCCcCCCCCchhHHHHhCHHHHHH---HH-----HH-----------hc
Confidence 9999999999887766543 2 1222 322 9999999877622 10 00 00
Q ss_pred CCCccCchhhhhcccCCCcCHHHHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCC
Q 012386 318 IPFILRTPHMSAMHHDTSPDLRVVGKKLKDILEISNTSLKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGE 397 (465)
Q Consensus 318 ~~~~l~t~~ls~i~~d~s~~~~~~~~il~~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~aagiaaii~~~~~~~~~~~~ 397 (465)
. + .+ ...+++. ++..+..|..++++++++++.+|+++++.++|
T Consensus 192 ~--------------~--~~---~~~v~~~-----------a~~gd~~a~~i~~~~~~~L~~~i~~l~~~l~p------- 234 (289)
T 2aa4_A 192 A--------------G--AD---AKTIFTR-----------AGQGDEQAQQLIHRSARTLARLIADIKATTDC------- 234 (289)
T ss_dssp T--------------T--CC---HHHHHHH-----------HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHCC-------
T ss_pred c--------------C--CC---HHHHHHH-----------HHcCCHHHHHHHHHHHHHHHHHHHHHHHhcCC-------
Confidence 0 0 01 2223332 56678899999999999999999999999999
Q ss_pred CceEEEEEecceeccchhHHHHHHHHHHHHhccCCCccEEEEEe---CChhHHHHHHHH
Q 012386 398 KQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHS---NDGSGIGAALLA 453 (465)
Q Consensus 398 ~~~~~V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l~~a---~Dgs~iGAAl~A 453 (465)
+ .|+++|++. ..+.|.+.+++.+++...+ ..+.++.+ +|++.+|||.++
T Consensus 235 -~--~ivlgG~~~-~~~~~~~~l~~~l~~~~~~---~~~~i~~~~~~~~a~~~GAa~l~ 286 (289)
T 2aa4_A 235 -Q--CVVVGGSVG-LAEGYLALVETYLAQEPAA---FHVDLLAAHYRHDAGLLGAALLA 286 (289)
T ss_dssp -S--EEEEEHHHH-TSTTHHHHHHHHHTTSCGG---GCCEEEECSCSSCHHHHHHHHHH
T ss_pred -C--EEEEeCccc-ccHHHHHHHHHHHHHhcCc---cCCEEEECCCCCchHHHHHHHHH
Confidence 4 588999998 6799999999998875322 24556554 789999999876
No 21
>2gup_A ROK family protein; sugar kinase, streptococcus pneumoniae TIGR4, AP sucrose, structural genomics, PSI; HET: SUC; 2.01A {Streptococcus pneumoniae} SCOP: c.55.1.10 c.55.1.10
Probab=99.91 E-value=4.7e-23 Score=203.63 Aligned_cols=265 Identities=18% Similarity=0.219 Sum_probs=187.2
Q ss_pred eEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCCcccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCcceeeee
Q 012386 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFT 175 (465)
Q Consensus 96 ~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG~t 175 (465)
++|+||+|||++|++++++.|+ ++.+. +++.| .+.+++++.|.+.+. + .+...+|++
T Consensus 5 ~~lgidiggt~i~~~l~d~~g~---il~~~--~~~~~-----~~~~~~~~~i~~~i~----~---------~~i~gigi~ 61 (292)
T 2gup_A 5 TIATIDIGGTGIKFASLTPDGK---ILDKT--SISTP-----ENLEDLLAWLDQRLS----E---------QDYSGIAMS 61 (292)
T ss_dssp CEEEEEEETTEEEEEEECTTCC---EEEEE--EECCC-----SSHHHHHHHHHHHHT----T---------SCCSEEEEE
T ss_pred EEEEEEECCCEEEEEEECCCCC---EEEEE--EEeCC-----CCHHHHHHHHHHHHH----h---------CCCcEEEEE
Confidence 4899999999999999999884 66443 34444 245566665554443 2 136789999
Q ss_pred eecccccccCCceEEeccCCccccCCCCCCcHHHHHHHHHHHcCCCeeEEEEEechHHHhhcccc--cCCceEEEEEEcc
Q 012386 176 FSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRY--HNKDAIAAVILGT 253 (465)
Q Consensus 176 fSfPv~q~~i~~g~Li~wtKgF~~~~~~g~dv~~~L~~al~~~gl~v~v~alvNDtvatlla~~y--~~~~~~iglIlGT 253 (465)
+|+|++.. ++.+...+ +++++.+.|+.+.| +.+ ++|| .+.||++++++++.+ .+.++.+.+++||
T Consensus 62 ~pG~vd~~---~g~v~~~~---~~~~~~~~~l~~~l-~~~---~~pv---~v~NDa~aaa~~e~~~~~~~~~~v~l~~Gt 128 (292)
T 2gup_A 62 VPGAVNQE---TGVIDGFS---AVPYIHGFSWYEAL-SSY---QLPV---HLENDANCVGLSELLAHPELENAACVVIGT 128 (292)
T ss_dssp ESSEECTT---TCBEESCC---SSGGGSSSBHHHHT-GGG---CCCE---EEEEHHHHHHHHHHHHCTTCSSEEEEEESS
T ss_pred ecCcccCC---CCEEEecC---CCCcccCCCHHHHH-HHc---CCCE---EEechHHHHHHHHHHhcCCCCeEEEEEECC
Confidence 99999752 23322111 12223368999999 877 8996 999999999999976 4567899999999
Q ss_pred ccceeEEccCCCCcccCC---CC-----CCC--CceeeeehhccccHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccC
Q 012386 254 GTNAAYVERAHAIPKWHG---LL-----PKS--GEMIFEKIISGMYLGEIVRRVLCRMAEEANFFGDTVPPKLKIPFILR 323 (465)
Q Consensus 254 G~Na~yie~~~~i~k~~~---~~-----~~~--g~~~fEkm~SG~YLGEi~R~~l~~~~~~~~lf~~~~~~~l~~~~~l~ 323 (465)
|++++++.+++.+.+.++ ++ +++ +.-|+|.++|+..|-+.++. .. +. + .++
T Consensus 129 GiG~giv~~G~l~~G~~g~aGEiGh~~~~~~~~~~gcle~~~s~~~l~~~~~~---~~--------~~-~-------~~~ 189 (292)
T 2gup_A 129 GIGGAMIINGRLHRGRHGLGGEFGYMTTLAPAEKLNNWSQLASTGNMVRYVIE---KS--------GH-T-------DWD 189 (292)
T ss_dssp SEEEEEEETTEEECCTTSCTTCGGGCBSSCCSSSCCBHHHHHSHHHHHHHHHH---HH--------SS-C-------CCC
T ss_pred ceEEEEEECCEEEecCCCCCccceeEEeccCCCCCCcHHHhcCHHHHHHHHHH---hh--------CC-C-------CCC
Confidence 999999999887766543 21 211 23599999999887433221 11 00 0 001
Q ss_pred chhhhhcccCCCcCHHHHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEE
Q 012386 324 TPHMSAMHHDTSPDLRVVGKKLKDILEISNTSLKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVI 403 (465)
Q Consensus 324 t~~ls~i~~d~s~~~~~~~~il~~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~aagiaaii~~~~~~~~~~~~~~~~~V 403 (465)
...+++. ++.++..|..+++++++++|.+|+++++.++| + .|
T Consensus 190 -----------------~~~v~~~-----------a~~gd~~a~~i~~~~~~~L~~~i~~l~~~l~p--------~--~I 231 (292)
T 2gup_A 190 -----------------GRKIYQE-----------AAAGNILCQEAIERMNRNLAQGLLNIQYLIDP--------G--VI 231 (292)
T ss_dssp -----------------HHHHHHH-----------HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHCC--------S--EE
T ss_pred -----------------HHHHHHH-----------HHcCCHHHHHHHHHHHHHHHHHHHHHHHHhCC--------C--EE
Confidence 1222322 56677899999999999999999999999999 4 58
Q ss_pred EEecceeccchhHHHHHHHHHHHHhccCCC--ccEEEEEe---CChhHHHHHHHHH
Q 012386 404 ALDGGLFEHYTKFSACMQSTVKELLGEEVS--ETVVIEHS---NDGSGIGAALLAA 454 (465)
Q Consensus 404 ~idGsv~~~~~~f~~~l~~~l~~~~~~~~~--~~v~l~~a---~Dgs~iGAAl~Aa 454 (465)
+++|++. ..+.|.+.+++.+++....... ..+.|..+ +|++.+|||.++.
T Consensus 232 vlgG~i~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~a~~~GAa~~~~ 286 (292)
T 2gup_A 232 SLGGSIS-QNPDFIQGVKKAVEDFVDAYEEYTVAPVIQACTYHADANLYGALVNWL 286 (292)
T ss_dssp EEESGGG-GCHHHHHHHHHHHHHHHHHCTTCCSCCCEEECSCSTTHHHHHHHHHHH
T ss_pred EEeCccc-cchHHHHHHHHHHHHhhcccccccCCCeEEEcccCChhhHHHHHHHHH
Confidence 8999996 4799999999999887543211 23455544 8899999998874
No 22
>3mcp_A Glucokinase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; 3.00A {Parabacteroides distasonis}
Probab=99.90 E-value=5.2e-23 Score=210.17 Aligned_cols=268 Identities=15% Similarity=0.126 Sum_probs=191.0
Q ss_pred cceeEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCCcccCCcchHHHHHHH---HHHHHHHhhCCCCCCCCCCc
Q 012386 93 EKGLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAA---ALAKFVATEGEGFHVSPGRQ 169 (465)
Q Consensus 93 E~G~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~---~I~~fl~~~~~~~~~~~~~~ 169 (465)
+.+++|++|+|||++|+++++ .|+ ++.+. .+++.+.. +.+++++.|.+ .+.+++. .+.
T Consensus 7 d~~~~lgiDIGgt~i~~~l~d-~G~---il~~~-~~~~~~~~----~~~~~l~~i~~~~~~i~~~~~----------~~i 67 (366)
T 3mcp_A 7 DNRIVMTLDAGGTNFVFSAIQ-GGK---EIADP-VVLPACAD----CLDKCLGNLVEGFKAIQAGLP----------EAP 67 (366)
T ss_dssp CCCEEEEEECSSSEEEEEEEE-TTE---ECSCC-EEEECCTT----CHHHHHHHHHHHHHHHHTTCS----------SCC
T ss_pred CCCEEEEEEECcceEEEEEEE-CCE---EEEEE-EEEECCCC----CHHHHHHHHHHHHHHHHHHhh----------cCC
Confidence 356899999999999999999 774 54321 13444432 67888888888 5555432 247
Q ss_pred ceeeeeeecccccccCCceEEeccCCccccCCCC-CCcHHHHHHHHHHHcCCCeeEEEEEechHHHhhcccccC------
Q 012386 170 RELGFTFSFPVRQTSIASGDLIKWTKGFSIEDTV-GEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHN------ 242 (465)
Q Consensus 170 ~~lG~tfSfPv~q~~i~~g~Li~wtKgF~~~~~~-g~dv~~~L~~al~~~gl~v~v~alvNDtvatlla~~y~~------ 242 (465)
..+|+++|+|++.. ++.+..-+ +++++. |.|+.+.|++.| ++|| .|.||+++.++++++.+
T Consensus 68 ~gIGIavPG~Vd~~---~G~i~~~~---nlp~w~~~~~l~~~L~~~~---g~PV---~veNDanaaAlgE~~~G~~p~~~ 135 (366)
T 3mcp_A 68 VAISFAFPGPADYQ---AGIIGDLP---NFPSFRGGVALGPFLEDIF---GIPV---FINNDGSLFAYGEALTGVLPEIN 135 (366)
T ss_dssp CEEEEECCSSEETT---TTEECCCT---TCGGGTTCBCHHHHHHHHH---CSCE---EEECHHHHHHHHHHHTSHHHHHH
T ss_pred eEEEEEecceEeCC---CCEEEeCC---CcccccCCCCHHHHHHHHH---CCCE---EEechhhHHHHHHHHhCCCcccc
Confidence 88999999999752 34443222 344555 799999999999 9996 99999999999998754
Q ss_pred -----------CceEEEEEEccccceeEEccCCCCcccCC---CC---C-CCCc-eeeeehhccccHHHHHHHHHHHHhh
Q 012386 243 -----------KDAIAAVILGTGTNAAYVERAHAIPKWHG---LL---P-KSGE-MIFEKIISGMYLGEIVRRVLCRMAE 303 (465)
Q Consensus 243 -----------~~~~iglIlGTG~Na~yie~~~~i~k~~~---~~---~-~~g~-~~fEkm~SG~YLGEi~R~~l~~~~~ 303 (465)
.++.+.+.+|||++++++.+++.+.+.++ ++ + .+|. -|+|.++|+..|-+..+...
T Consensus 136 ~~l~~~g~~~~~~~~v~l~lGtGIG~givi~G~l~~G~~g~AGEiGH~~~~CG~~GclE~~~S~~al~~~~~~~~----- 210 (366)
T 3mcp_A 136 RRLREAGSTKRYKNLLGVTLGTGFGAGVVIDGELLRGDNAAGGYVWCLRNKKYPEYIVEESVSIRAVMRVYAERS----- 210 (366)
T ss_dssp HHHHHTTCCCCCCEEEEEEESSSEEEEEEETTEECCCTTSCTTCCTTSBCSSCTTSBGGGTSSHHHHHHHHHHHS-----
T ss_pred cccccccccCCCCcEEEEEECCcceEEEEECCEEecCCCCCCceeecccCCCCCCcceeeeecHHHHHHHHHHhh-----
Confidence 57899999999999999999988877654 22 2 2233 39999999999954433210
Q ss_pred cccCCCCCCCCCCCCCCccCchhhhhcccCCCcCHHHHHHHHhhhhccCCCCHHHHH---HHH-HHHHHHHHHHHHHHHH
Q 012386 304 EANFFGDTVPPKLKIPFILRTPHMSAMHHDTSPDLRVVGKKLKDILEISNTSLKMRK---LVV-ELCDIVATRGARLSAA 379 (465)
Q Consensus 304 ~~~lf~~~~~~~l~~~~~l~t~~ls~i~~d~s~~~~~~~~il~~~~~~~~~~~~d~~---~~~-~ia~~V~~RaA~l~aa 379 (465)
+ . + ..++ ..++++. ++ .++ ..|..+++++++++|.
T Consensus 211 -----~-~-~------~~~~-----------------~~~i~~~-----------a~~~~~gD~~~a~~~l~~~~~~Lg~ 249 (366)
T 3mcp_A 211 -----G-D-A------GART-----------------PKEIFEI-----------AEGIRPGNREAAIAAFEELGEMAGD 249 (366)
T ss_dssp -----S-C-C------SCCC-----------------HHHHHHH-----------HHTSSCSCHHHHHHHHHHHHHHHHH
T ss_pred -----C-C-C------CCCC-----------------HHHHHHH-----------HhhhhcCCHHHHHHHHHHHHHHHHH
Confidence 0 0 0 0011 1222222 34 556 8899999999999999
Q ss_pred HHHHHHHHhCCCCcCCCCCceEEEEEecceeccchhHHHHHHHHHHHHhccCCCccEEEEEe---CChhHHH
Q 012386 380 GIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHS---NDGSGIG 448 (465)
Q Consensus 380 giaaii~~~~~~~~~~~~~~~~~V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l~~a---~Dgs~iG 448 (465)
+|+++++.++| .|.++|++....+.|.+.+++.+++.+.+.....+.+..+ +.....+
T Consensus 250 ~i~nl~~~ldP-----------~IviGGgi~~~~~~~~~~l~~~l~~~~~~~~~~~~~i~~s~~~~~~~~~~ 310 (366)
T 3mcp_A 250 ALASAITLIDG-----------LIVIGGGLSGASKYILPVLLKEMNAQTGMMDGARFGRLQKEVYDLDEEKS 310 (366)
T ss_dssp HHHHHHHHHCS-----------EEEEESGGGGGHHHHHHHHHHHHHHHTTCC--------CCEEEETTSHHH
T ss_pred HHHHHHHHHCC-----------EEEEEChhhhchHHHHHHHHHHHHHhcchhccCCceEEEeecCCchhHHH
Confidence 99999999986 5889999999999999999999999887655567777655 4444443
No 23
>3epq_A Putative fructokinase; SCRK, ADP binding, PSI2, MCSG, structural GENO protein structure initiative, midwest center for structural genomics; HET: MLY MSE MLZ ADP; 1.66A {Bacillus subtilis} PDB: 1xc3_A 3ohr_A* 3lm9_A*
Probab=99.90 E-value=2.8e-23 Score=207.10 Aligned_cols=252 Identities=15% Similarity=0.178 Sum_probs=179.2
Q ss_pred eEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCCcccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCcceeeee
Q 012386 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFT 175 (465)
Q Consensus 96 ~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG~t 175 (465)
+|++||+|||++|++++++.|+ ++.+. +++.| +.+++++.|++. +.+ .+...+|++
T Consensus 4 ~~lgiDiGgt~i~~~l~d~~G~---il~~~--~~~t~------~~~~~l~~i~~~----~~~---------~~i~gigi~ 59 (302)
T 3epq_A 4 MLGGIEAGGTXFVCAVGREDGT---IIDRI--EFPTX------MPDETIEXVIQY----FSQ---------FSLQAIGIG 59 (302)
T ss_dssp CEEEEEECSSEEEEEEECTTSC---EEEEE--EEECC------CHHHHHHHHHHH----HTT---------SCCSEEEEE
T ss_pred EEEEEEECcceeEEEEEECCCc---EEEEE--EecCC------ChHHHHHHHHHH----hcc---------CCceEEEEE
Confidence 6899999999999999999884 66543 34443 345566655543 322 236889999
Q ss_pred eeccccccc--CCceEEeccCCccccCCCCCCcHHHHHHHHHHHcCCCeeEEEEEechHHHhhccccc----CCceEEEE
Q 012386 176 FSFPVRQTS--IASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH----NKDAIAAV 249 (465)
Q Consensus 176 fSfPv~q~~--i~~g~Li~wtKgF~~~~~~g~dv~~~L~~al~~~gl~v~v~alvNDtvatlla~~y~----~~~~~igl 249 (465)
+|+|++... ...+.+...+ ..++.+.|+.+.|++.| ++|| .+.||+++++++++|. +.++.+.+
T Consensus 60 ~pG~vd~~~~~~~~G~i~~~~----~~~w~~~~l~~~l~~~~---~~pV---~v~NDanaaalaE~~~G~~~~~~~~~~l 129 (302)
T 3epq_A 60 SFGPVDNDXTSQTYGTITATP----XAGWRHYPFLQTVXNEM---XIPV---GFSTDVNAAALGEFLFGEAXGLDSCLYI 129 (302)
T ss_dssp ECSSEECCTTSTTTTEECCCS----STTTBTCCHHHHHHHHH---CSCE---EEEEHHHHHHHHHHHHSTTTTCSCEEEE
T ss_pred eceeeccccccccccEEecCC----CCCccCCChHHHHHHHh---CCCE---EEechhHHHHHHHHHhCCCCCCCcEEEE
Confidence 999997532 1124433221 13455899999999999 9996 9999999999999874 56899999
Q ss_pred EEccccceeEEccCCCCcccC-CCC-----CCC-----------CceeeeehhccccHHHHHHHHHHHHhhcccCCCCCC
Q 012386 250 ILGTGTNAAYVERAHAIPKWH-GLL-----PKS-----------GEMIFEKIISGMYLGEIVRRVLCRMAEEANFFGDTV 312 (465)
Q Consensus 250 IlGTG~Na~yie~~~~i~k~~-~~~-----~~~-----------g~~~fEkm~SG~YLGEi~R~~l~~~~~~~~lf~~~~ 312 (465)
++|||++++++.+++.+.+.. +++ ++. +.-|+|.++|+..|- |+. . .
T Consensus 130 ~~GtGiG~gii~~G~l~~G~~agEiGh~~v~~~~~~~~~~~C~~~~gclE~~~S~~al~---~~~-----~-------~- 193 (302)
T 3epq_A 130 TIGTGIGAGAIVEGRLLQGLSHPEMGHIYIRRHPDDVYQGXCPYHGDCFEGLASGPAIE---ARW-----G-------X- 193 (302)
T ss_dssp EESSSEEEEEEETTEECCSSSCCCGGGCCCCCCTTCCCCCSBTTTBSSHHHHHSHHHHH---HHH-----S-------S-
T ss_pred EECCceEEEEEECCEEcccCCCCccceEEEecCCCCCcCcccCCCCcchhhhCCHHHHH---HHh-----h-------c-
Confidence 999999999999988877642 221 111 113899999999883 221 0 0
Q ss_pred CCCCCCCCccCchhhhhcccCCCcCHHHHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 012386 313 PPKLKIPFILRTPHMSAMHHDTSPDLRVVGKKLKDILEISNTSLKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRDT 392 (465)
Q Consensus 313 ~~~l~~~~~l~t~~ls~i~~d~s~~~~~~~~il~~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~aagiaaii~~~~~~~ 392 (465)
. . ..+. . +..+++++++++|.+|+++++.++|
T Consensus 194 ~------~----~~~~------------------~------------------~~~~~~~~~~~La~~i~nl~~~ldP-- 225 (302)
T 3epq_A 194 K------A----ADLS------------------D------------------IAQVWELEGYYIAQALAQYILILAP-- 225 (302)
T ss_dssp C------G----GGGT------------------T------------------CHHHHHHHHHHHHHHHHHHHHHTCC--
T ss_pred c------c----cccc------------------c------------------hHHHHHHHHHHHHHHHHHHHHHHCc--
Confidence 0 0 0000 0 1246678899999999999999999
Q ss_pred cCCCCCceEEEEEecceeccchhHHHHHHHHHHHHhccCCC-------ccEEEEEe---CChhHHHHHHHHH
Q 012386 393 VRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVS-------ETVVIEHS---NDGSGIGAALLAA 454 (465)
Q Consensus 393 ~~~~~~~~~~V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~-------~~v~l~~a---~Dgs~iGAAl~Aa 454 (465)
+ .|+++|++.... .|.+.+++.+++.+..... ..+.|+.+ +|++.+|||.++.
T Consensus 226 ------e--~IviGGgi~~~~-~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~I~~s~lg~~a~l~GAa~l~~ 288 (302)
T 3epq_A 226 ------X--XIILGGGVMQQX-QVFSYIYQYVPKIMNSYLDFSELSDDISDYIVPPRLGSNAGIIGTLVLAH 288 (302)
T ss_dssp ------S--CEEEESSGGGCT-HHHHHHHHHHHHHHTTCSCCGGGTTTGGGTEECCTTGGGHHHHHHHHHHH
T ss_pred ------h--hhhcCchhhhhH-HHHHHHHHHHHHHHhhhccCcccccccCceEEECCcCChHHHHHHHHHHH
Confidence 4 688999998875 4999999999987642111 12345555 8999999998864
No 24
>1sz2_A Glucokinase, glucose kinase; ATP-dependent, glucose binding, transferase; HET: MSE BGC; 2.20A {Escherichia coli} SCOP: c.55.1.7 PDB: 1q18_A*
Probab=99.89 E-value=2.9e-22 Score=202.03 Aligned_cols=268 Identities=16% Similarity=0.193 Sum_probs=178.7
Q ss_pred ceeEEEEEeCCceEEEEEEEe-cCCcceeEEEEeeeeecCCCcccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCccee
Q 012386 94 KGLFYALDLGGTNFRVLRVQL-GGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQREL 172 (465)
Q Consensus 94 ~G~~LaiDlGGTNlRv~~V~l-~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~l 172 (465)
.+++|++|+||||+|++++++ +|. ++.+. +++. . ..+.+ .+.|.+++++.+ .+...+
T Consensus 13 ~~~~lgiDiGGT~i~~~l~dl~~g~---i~~~~--~~~~--~----~~~~~----~~~i~~~~~~~~-------~~i~gi 70 (332)
T 1sz2_A 13 TKYALVGDVGGTNARLALCDIASGE---ISQAK--TYSG--L----DYPSL----EAVIRVYLEEHK-------VEVKDG 70 (332)
T ss_dssp -CEEEEEEEETTEEEEEEEETTTCC---EEEEE--EEEG--G----GCSCH----HHHHHHHHHHSC-------CCCCEE
T ss_pred CCEEEEEEechhheEEEEEECCCCc---EEEEE--EecC--C----CcCCH----HHHHHHHHHhcC-------CCccEE
Confidence 468999999999999999997 463 55332 3332 2 12223 344555665543 136789
Q ss_pred eeeeecccccccCCceEEeccCCccccCCCCCCcHHHHHHHHHHHcCCC-eeEEEEEechHHHhhccccc----------
Q 012386 173 GFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLD-MRVAALVNDTIGTLAGGRYH---------- 241 (465)
Q Consensus 173 G~tfSfPv~q~~i~~g~Li~wtKgF~~~~~~g~dv~~~L~~al~~~gl~-v~v~alvNDtvatlla~~y~---------- 241 (465)
|+++|+|++...+.. +.+.|. .+ .+.|++.| ++| | .|.||+++.++++.+.
T Consensus 71 gi~~pG~vd~~~~~~-~nl~w~----------~~-~~~l~~~~---~~p~V---~v~NDanaaalgE~~~~~~~~~~~g~ 132 (332)
T 1sz2_A 71 CIAIACPITGDWVAM-TNHTWA----------FS-IAEMKKNL---GFSHL---EIINDFTAVSMAIPMLKKEHLIQFGG 132 (332)
T ss_dssp EEEESSCCCSSEECC-SSSCCC----------EE-HHHHHHHH---TCSEE---EEEEHHHHHHHHGGGCCGGGEEECSS
T ss_pred EEEEeCceeCCEEee-eCCCCc----------CC-HHHHHHHh---CCCcE---EEEeCHhHHhccccccChhhheecCC
Confidence 999999997322211 122442 56 57888888 898 7 9999999999999863
Q ss_pred ----CCceEEEEEEccccceeEEccCCCCcccCC---C-----CCCC---------------CceeeeehhccccHHHHH
Q 012386 242 ----NKDAIAAVILGTGTNAAYVERAHAIPKWHG---L-----LPKS---------------GEMIFEKIISGMYLGEIV 294 (465)
Q Consensus 242 ----~~~~~iglIlGTG~Na~yie~~~~i~k~~~---~-----~~~~---------------g~~~fEkm~SG~YLGEi~ 294 (465)
+.++.+.+++|||++++++.+++ .++++ + +.+. |.-|+|.++||..|-+..
T Consensus 133 g~~~~~~~~~~v~~GTGiG~giv~~g~--~G~~g~agE~GH~~v~~~~~~~~~l~~~~c~~~g~gclE~~~S~~~l~~~~ 210 (332)
T 1sz2_A 133 AEPVEGKPIAVYGAGTGLGVAHLVHVD--KRWVSLPGEGGHVDFAPNSEEEAIILEILRAEIGHVSAERVLSGPGLVNLY 210 (332)
T ss_dssp CCCCTTCCEEEEEESSSEEEEEEEEET--TEEEEEECCGGGSBCCCCSHHHHHHHHHHHHHSSSCBGGGTSSHHHHHHHH
T ss_pred CCCCCCCcEEEEEcCccceEEEEecCC--CCeeeCCCCccccCcCCCChHHHHHHHHHHhccCCcchhhhccHHHHHHHH
Confidence 44789999999999999999876 44432 2 1222 233999999999996655
Q ss_pred HHHHHHHhhcccCCCCCCCCCCCCCCccCchhhhhcccCCCcCHHHHHHHHhhhhccCCCCHHHHHHH-HHHHHHHHHHH
Q 012386 295 RRVLCRMAEEANFFGDTVPPKLKIPFILRTPHMSAMHHDTSPDLRVVGKKLKDILEISNTSLKMRKLV-VELCDIVATRG 373 (465)
Q Consensus 295 R~~l~~~~~~~~lf~~~~~~~l~~~~~l~t~~ls~i~~d~s~~~~~~~~il~~~~~~~~~~~~d~~~~-~~ia~~V~~Ra 373 (465)
+..... . +.. +..+ ....+++. ++.+ +..|..+++++
T Consensus 211 ~~~~~~---~--------~~~---~~~~-----------------~~~~i~~~-----------a~~G~D~~A~~~~~~~ 248 (332)
T 1sz2_A 211 RAIVKA---D--------NRL---PENL-----------------KPKDITER-----------ALADSCTDCRRALSLF 248 (332)
T ss_dssp HHHHHH---T--------TCC---CCCC-----------------CHHHHHHH-----------HHHTCCHHHHHHHHHH
T ss_pred HHHhhc---c--------CCC---ccCC-----------------CHHHHHHH-----------HHcCCCHHHHHHHHHH
Confidence 432211 0 000 0001 12233333 6778 89999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEecceecc-chhHH-HHHHHHHHH--HhccC-CCccEEEEEeCChhHHH
Q 012386 374 ARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEH-YTKFS-ACMQSTVKE--LLGEE-VSETVVIEHSNDGSGIG 448 (465)
Q Consensus 374 A~l~aagiaaii~~~~~~~~~~~~~~~~~V~idGsv~~~-~~~f~-~~l~~~l~~--~~~~~-~~~~v~l~~a~Dgs~iG 448 (465)
++++|.+|+++++.++| +. -|+++||+... .+.|. +.+++.+++ .+... ....+.+...+|++++|
T Consensus 249 ~~~Lg~~i~~l~~~l~P--------~~-gvvigGGi~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~l~G 319 (332)
T 1sz2_A 249 CVIMGRFGGNLALNLGT--------FG-GVFIAGGIVPRFLEFFKASGFRAAFEDKGRFKEYVHDIPVYLIVHDNPGLLG 319 (332)
T ss_dssp HHHHHHHHHHHHHHHTC--------TT-EEEEECSSSGGGHHHHHHSSHHHHHHCCGGGHHHHTTCCEEEECCSCHHHHH
T ss_pred HHHHHHHHHHHHHHHCC--------Ce-EEEEEChhhhhHHHHhccHHHHHHHHhcCchhhHHhCceEEEEECCchhHHH
Confidence 99999999999999999 31 27899999886 44444 357777654 11110 11235555568999999
Q ss_pred HHHHHH
Q 012386 449 AALLAA 454 (465)
Q Consensus 449 AAl~Aa 454 (465)
||.++.
T Consensus 320 Aa~l~~ 325 (332)
T 1sz2_A 320 SGAHLR 325 (332)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998864
No 25
>2ch5_A NAGK protein; transferase, N-acetylglucosamine, glcnac, sugar kinase, RIBO H fold, sugar kinase/HSP70/actin superfamily, domain rotati conformation; HET: NAG NDG; 1.9A {Homo sapiens} SCOP: c.55.1.5 c.55.1.5 PDB: 2ch6_A*
Probab=99.88 E-value=9.2e-22 Score=198.77 Aligned_cols=299 Identities=14% Similarity=0.164 Sum_probs=189.0
Q ss_pred eEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCCcccCCcchHHHHHHHHHHHHHHhhCCCCCCCCC-Ccceeee
Q 012386 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPG-RQRELGF 174 (465)
Q Consensus 96 ~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~-~~~~lG~ 174 (465)
++|+||+|||++|++++++.|+ ++.+. ..+ |......+.+++++.|++.|.+++++.+... . +...+|+
T Consensus 7 ~~lgiDiGgt~~~~~l~d~~g~---i~~~~--~~~-~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~----~~~i~gigi 76 (347)
T 2ch5_A 7 IYGGVEGGGTRSEVLLVSEDGK---ILAEA--DGL-STNHWLIGTDKCVERINEMVNRAKRKAGVDP----LVPLRSLGL 76 (347)
T ss_dssp EEEEEEECTTCEEEEEEETTSC---EEEEE--EEC-CCCHHHHCHHHHHHHHHHHHHHHHHHHTCCT----TCCBSEEEE
T ss_pred EEEEEEcCccceEEEEEeCCCC---EEEEE--eCC-CCCcccCCHHHHHHHHHHHHHHHHHhcCCCc----ccceeEEEE
Confidence 7899999999999999999884 65433 221 2221113578899999999999998765321 3 4788999
Q ss_pred eeecccccccCCceEEeccCCccccCCCCCCcHHHHHHHHHHHcCCCeeEEEEEechHHHhhcccccCCceEEEEEEccc
Q 012386 175 TFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHNKDAIAAVILGTG 254 (465)
Q Consensus 175 tfSfPv~q~~i~~g~Li~wtKgF~~~~~~g~dv~~~L~~al~~~gl~v~v~alvNDtvatlla~~y~~~~~~iglIlGTG 254 (465)
+.|+|++.. .+.++.+.|++.+...++|| .|.||+++++++ .| .++.+.+++|||
T Consensus 77 ~~pG~vd~~-------------------~~~~l~~~l~~~~~~~~~pv---~v~NDa~aaa~a-~~--~~~~v~v~~GTG 131 (347)
T 2ch5_A 77 SLSGGDQED-------------------AGRILIEELRDRFPYLSESY---LITTDAAGSIAT-AT--PDGGVVLISGTG 131 (347)
T ss_dssp EETTTTCHH-------------------HHHHHHHHHHHHCTTSBSCE---EEEEHHHHHHHH-HC--SSCEEEEEESSS
T ss_pred eccCCCchH-------------------HHHHHHHHHHHhcCCCCceE---EEECcHHHHHHh-hC--CCCcEEEEEcCC
Confidence 999999753 13567777777761111775 999999999999 44 367899999999
Q ss_pred cceeEEccCCCCcccCCCCCCCCce-eeee-hhccccHHHHHHHHHHHHhhcccCCCCCCCCC-----CCC----CCccC
Q 012386 255 TNAAYVERAHAIPKWHGLLPKSGEM-IFEK-IISGMYLGEIVRRVLCRMAEEANFFGDTVPPK-----LKI----PFILR 323 (465)
Q Consensus 255 ~Na~yie~~~~i~k~~~~~~~~g~~-~fEk-m~SG~YLGEi~R~~l~~~~~~~~lf~~~~~~~-----l~~----~~~l~ 323 (465)
++++++.+.. .....|.. |+|- ..||.|++............ + ..+.. |.. .+.++
T Consensus 132 ig~~~v~~~G-------~~c~cG~~G~l~~de~s~~~i~~~~~~~~~~~~d-g-----~~~~~~~~~~l~~~~~~~~g~~ 198 (347)
T 2ch5_A 132 SNCRLINPDG-------SESGCGGWGHMMGDEGSAYWIAHQAVKIVFDSID-N-----LEAAPHDIGYVKQAMFHYFQVP 198 (347)
T ss_dssp EEEEEECTTS-------CEEEEECCCTTTCCTTSHHHHHHHHHHHHHHHHH-T-----SSCCSSCCHHHHHHHHHHHTCS
T ss_pred ceeEEEcCCC-------CEEecCCcCcccCCCccHHHHHHHHHHHHHHHHh-C-----CCCCCCCccHHHHHHHHHhCCC
Confidence 9998875321 11112222 7776 78888987543332221111 1 11100 000 00000
Q ss_pred c-h-hhhhcccCCC-cCHH-HHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCc
Q 012386 324 T-P-HMSAMHHDTS-PDLR-VVGKKLKDILEISNTSLKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQ 399 (465)
Q Consensus 324 t-~-~ls~i~~d~s-~~~~-~~~~il~~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~aagiaaii~~~~~~~~~~~~~~ 399 (465)
+ . .+..+..+.+ .++. ....+++. ++.++..|..+++++++++|.+|+++++.++|... ...+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~-----------a~~gD~~a~~il~~~~~~La~~i~~l~~~~~p~~~--~~~~ 265 (347)
T 2ch5_A 199 DRLGILTHLYRDFDKCRFAGFCRKIAEG-----------AQQGDPLSRYIFRKAGEMLGRHIVAVLPEIDPVLF--QGKI 265 (347)
T ss_dssp SHHHHHTTTTTTCCHHHHHTTHHHHHHH-----------HHTTCHHHHHHHHHHHHHHHHHHHHHGGGSCGGGG--CSTT
T ss_pred CHHHHHHHHhcCCcHHHHHHHHHHHHHH-----------HHcCCHHHHHHHHHHHHHHHHHHHHHHHHhccccc--ccCC
Confidence 0 0 0000000000 0000 02223332 56788999999999999999999999999998300 0001
Q ss_pred eEEEEEecceeccchhHHHHHHHHHHHHhc-cCC--CccEEEEEeCChhHHHHHHHHHH
Q 012386 400 KSVIALDGGLFEHYTKFSACMQSTVKELLG-EEV--SETVVIEHSNDGSGIGAALLAAS 455 (465)
Q Consensus 400 ~~~V~idGsv~~~~~~f~~~l~~~l~~~~~-~~~--~~~v~l~~a~Dgs~iGAAl~Aa~ 455 (465)
...|+++||+++..|.|.+.+++.+++... +.. ...|.+....+++.+|||.++.-
T Consensus 266 ~~~IvlgGgv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~a~~~GAa~la~~ 324 (347)
T 2ch5_A 266 GLPILCVGSVWKSWELLKEGFLLALTQGREIQAQNFFSSFTLMKLRHSSALGGASLGAR 324 (347)
T ss_dssp CEEEEEESGGGGGHHHHHHHHHHHHHHHC---CCCSCSEEEEEEESSCTHHHHHHHHHH
T ss_pred CceEEEECCcccCcHHHHHHHHHHHHhhccccccccCCceEEEecCCChHHHHHHHHHH
Confidence 246889999999999999999999988742 111 12344433456999999988753
No 26
>2q2r_A Glucokinase 1, putative; ATPase hexose kinase family, transferase; HET: BGC ADP; 2.10A {Trypanosoma cruzi}
Probab=99.88 E-value=5e-22 Score=203.40 Aligned_cols=272 Identities=15% Similarity=0.054 Sum_probs=188.4
Q ss_pred eeEEEEEeCCceEEEEEEEe----cCCcceeEEEEeeeeecCCCcccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCcc
Q 012386 95 GLFYALDLGGTNFRVLRVQL----GGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQR 170 (465)
Q Consensus 95 G~~LaiDlGGTNlRv~~V~l----~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~ 170 (465)
+++|++|+|||++|++++++ .| +++.+. + ..|. .+.+++++.|.+.++++..... .+..
T Consensus 29 ~~~lgiDiGgt~i~~~l~d~~~~~~g---~il~~~--~-~~~~----~~~~~~~~~i~~~i~~~~~~~~-------~~i~ 91 (373)
T 2q2r_A 29 PLTFVGDVGGTSARMGFVREGKNDSV---HACVTR--Y-SMKR----KDITEIIEFFNEIIELMPASVM-------KRVK 91 (373)
T ss_dssp CEEEEEEECSSEEEEEEEEECGGGCE---EEEEEE--E-ECTT----CBGGGHHHHHHHHHHHSCHHHH-------TTEE
T ss_pred CeEEEEEEccccEEEEEEecccCCCc---cEEEEe--e-ecCC----CCHHHHHHHHHHHHHHHhhccc-------cccc
Confidence 47999999999999999999 66 355433 1 1333 2577888888888877644321 2367
Q ss_pred eeeeeeecccccccCCceEEeccCCccccCCCCCC-cHHHHHHHHHHHcCC-CeeEEEEEechHHHhhc-----------
Q 012386 171 ELGFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGE-DVVGELTKAMERIGL-DMRVAALVNDTIGTLAG----------- 237 (465)
Q Consensus 171 ~lG~tfSfPv~q~~i~~g~Li~wtKgF~~~~~~g~-dv~~~L~~al~~~gl-~v~v~alvNDtvatlla----------- 237 (465)
.+|+++|+|++...+. ..+..|. +. |+.+++++.+ ++ || .|.||+++++++
T Consensus 92 gigi~~pG~vd~g~v~-~~~~~~~---------~~~~l~~~l~~~~---~~~pv---~v~NDa~aaalge~~l~~~~~~~ 155 (373)
T 2q2r_A 92 AGVINVPGPVTGGAVG-GPFNNLK---------GIARLSDYPKALF---PPGHS---AILNDLEAGGFGVLAVSDAHVFS 155 (373)
T ss_dssp EEEEEESSCEETTTEE-CCCSSSB---------SCEEGGGSCTTTS---CTTSE---EEEEHHHHHHHHHHHHHHTTCHH
T ss_pred EEEEEeeccccCCEEe-ccCCCCC---------CcCCHHHHHHHhc---CCCCE---EEEccHhHHhccccccChhhhcc
Confidence 8999999999762111 1133454 54 7877777666 77 86 999999999999
Q ss_pred ----cccc----------------CCceEEEEEEccccceeEEccCCCCcccCC---C-----CCCCC------------
Q 012386 238 ----GRYH----------------NKDAIAAVILGTGTNAAYVERAHAIPKWHG---L-----LPKSG------------ 277 (465)
Q Consensus 238 ----~~y~----------------~~~~~iglIlGTG~Na~yie~~~~i~k~~~---~-----~~~~g------------ 277 (465)
+.+. +.++.+.+++|||++++++.+++.+.++++ + +++.+
T Consensus 156 ~~~~E~~~~~~~~~~~~~~~g~~~~~~~~~~v~~GTGiG~gii~~g~l~~G~~~~aGE~Gh~~~~~~~~c~cg~~l~~~~ 235 (373)
T 2q2r_A 156 EYFGVMWEGTQWRTCEQEPAGSVIGRGRCLVLAPGTGLGSSLIYYNPPMNQHIVVPLELGSQTLPMRKDIDYIQTLHAEL 235 (373)
T ss_dssp HHEEEEECCTTTTTTCSSCTTSSCCSSCEEEEEESSSEEEEEEEECC---CEEEEEECGGGSBCCCSSCHHHHHHHHHHH
T ss_pred ccchhhcccccccccccCCCcCcCCCCCEEEEEeCCceeEEEEecCcccCCCcccccccceeecCCCCCcchhHHHHHHh
Confidence 5653 347899999999999999999887766543 2 22222
Q ss_pred --ceeeeehhccccHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccCchhhhhcccCCCcCHHHHHHHHhhhhccCCCC
Q 012386 278 --EMIFEKIISGMYLGEIVRRVLCRMAEEANFFGDTVPPKLKIPFILRTPHMSAMHHDTSPDLRVVGKKLKDILEISNTS 355 (465)
Q Consensus 278 --~~~fEkm~SG~YLGEi~R~~l~~~~~~~~lf~~~~~~~l~~~~~l~t~~ls~i~~d~s~~~~~~~~il~~~~~~~~~~ 355 (465)
.-|+|.++||..|-++.+... . +. ++ ..+ ...+++.
T Consensus 236 ~~~g~lE~~~S~~~l~~~~~~~~----~------~~-~~------~~~-----------------~~~i~~~-------- 273 (373)
T 2q2r_A 236 KLFPNYENMVSGAGLEFHYRQVV----R------GS-RP------PCS-----------------AGEIAKL-------- 273 (373)
T ss_dssp TSCCBHHHHSSHHHHHHHHHHHH----T------TS-SC------CCC-----------------HHHHHHH--------
T ss_pred hccccHhHhcCHHHHHHHHHHHh----c------CC-CC------CCC-----------------HHHHHHH--------
Confidence 359999999999965443311 0 00 10 001 1223332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEecceeccchhHHH--HHHHHHHHHhccCC-
Q 012386 356 LKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSA--CMQSTVKELLGEEV- 432 (465)
Q Consensus 356 ~~d~~~~~~ia~~V~~RaA~l~aagiaaii~~~~~~~~~~~~~~~~~V~idGsv~~~~~~f~~--~l~~~l~~~~~~~~- 432 (465)
++..+..|..+++++++++|.+++++++.++| + .|.++||.....+.|.+ .+++.+++.+.+..
T Consensus 274 ---a~~gD~~a~~~l~~~~~~L~~~i~~l~~~l~p--------~--~IvlgGG~~~~~~~~~~~~~i~~~l~~~~~~~~~ 340 (373)
T 2q2r_A 274 ---ASEGDANACKAMKKYHEYLMRVGSEASMALLP--------L--TIVLVGDNIVNNAFFYRNPQNLKEMHHEALNHEM 340 (373)
T ss_dssp ---HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHCC--------S--EEEECSHHHHHTHHHHHSHHHHHHHHHHHTCSGG
T ss_pred ---HHcCCHHHHHHHHHHHHHHHHHHHHHHHHHCC--------C--EEEEeCChHhCchhhhcchhHHHHHHHHHhhccc
Confidence 56678899999999999999999999999999 4 58888884444488999 88888887654321
Q ss_pred -----CccEEEEEe---CChhHHHHHHHHH
Q 012386 433 -----SETVVIEHS---NDGSGIGAALLAA 454 (465)
Q Consensus 433 -----~~~v~l~~a---~Dgs~iGAAl~Aa 454 (465)
...+.+..+ +|++.+|||.++.
T Consensus 341 ~~~~~~~~~~i~~~~~~~~a~l~GAa~l~~ 370 (373)
T 2q2r_A 341 ERFGFQSRVSYLRQKKLLNLNLMGCYRCGL 370 (373)
T ss_dssp GGGTSGGGCEEEEECSCCCHHHHHHHHHHH
T ss_pred chhhhhcCCcEEEEecCCchhHHHHHHHHH
Confidence 124555544 7999999998763
No 27
>1woq_A Inorganic polyphosphate/ATP-glucomannokinase; transferase; HET: BGC; 1.80A {Arthrobacter SP} SCOP: c.55.1.10 c.55.1.10
Probab=99.86 E-value=5.5e-21 Score=186.81 Aligned_cols=245 Identities=16% Similarity=0.225 Sum_probs=170.2
Q ss_pred CCcceeEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCCcccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCcc
Q 012386 91 GDEKGLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQR 170 (465)
Q Consensus 91 G~E~G~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~ 170 (465)
..+..++|+||+|||++|++++++.+. .++... ..++.|.. .+.+++++.|.+.+++++++.... ....
T Consensus 8 ~~~~~~~lgidiggt~i~~~l~dl~~g--~i~~~~-~~~~~~~~---~~~~~~~~~i~~~i~~~~~~~~~~-----~~~~ 76 (267)
T 1woq_A 8 SHKNAPLIGIDIGGTGIKGGIVDLKKG--KLLGER-FRVPTPQP---ATPESVAEAVALVVAELSARPEAP-----AAGS 76 (267)
T ss_dssp ---CCCEEEEEECSSEEEEEEEETTTT--EEEEEE-EEEECCSS---CCHHHHHHHHHHHHHHHHTSTTCC-----CTTC
T ss_pred cCCCCEEEEEEECCCEEEEEEEECCCC--eEEEEE-EecCCCcc---CCHHHHHHHHHHHHHHHHHhcccc-----Cccc
Confidence 344557999999999999999999732 354221 24455432 357889999999999987643210 1235
Q ss_pred eeeeeeecccccccCCceEEeccCCccccC-CCCCCcHHHHHHHHHHHcCCCeeEEEEEechHHHhhccccc----CCc-
Q 012386 171 ELGFTFSFPVRQTSIASGDLIKWTKGFSIE-DTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH----NKD- 244 (465)
Q Consensus 171 ~lG~tfSfPv~q~~i~~g~Li~wtKgF~~~-~~~g~dv~~~L~~al~~~gl~v~v~alvNDtvatlla~~y~----~~~- 244 (465)
.+|+++|+|++. +.++ ++- +++ ++.+.|+.+.|++.+ ++|| .+.||++++++++.+. +.+
T Consensus 77 ~igi~~pG~v~~-----g~v~-~~~--~l~~~w~~~~l~~~l~~~~---~~pV---~v~NDanaaalaE~~~g~~~~~~~ 142 (267)
T 1woq_A 77 PVGVTFPGIIQH-----GVVH-SAA--NVDKSWLNTDIDALLTARL---GRPV---EVINDADAAGLAEARYGAGAGVKG 142 (267)
T ss_dssp CEEEEESSCEET-----TEEC-CCT--TSCGGGTTCBHHHHHHHHH---TSCE---EEEEHHHHHHHHHHHHSTTTTCCS
T ss_pred eEEEEccceEcC-----CEEE-eCC--CCCCCCCCCCHHHHHHHHH---CCCE---EEeehhHHHHHHHHHhCCCCCCCC
Confidence 799999999972 3332 111 121 344799999999999 8996 9999999999999874 233
Q ss_pred eEEEEEEccccceeEEccCCCCcccCCCC---CCCCceeeeehhccccHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCc
Q 012386 245 AIAAVILGTGTNAAYVERAHAIPKWHGLL---PKSGEMIFEKIISGMYLGEIVRRVLCRMAEEANFFGDTVPPKLKIPFI 321 (465)
Q Consensus 245 ~~iglIlGTG~Na~yie~~~~i~k~~~~~---~~~g~~~fEkm~SG~YLGEi~R~~l~~~~~~~~lf~~~~~~~l~~~~~ 321 (465)
..+.+++|||++++++.+++.+.+ +++ +.++ .|+|.++|+..+-+ .
T Consensus 143 ~~~~l~~GtGIG~giv~~G~l~~G--gEiGh~~v~~-~~lE~~~S~~~l~~-----------~----------------- 191 (267)
T 1woq_A 143 TVLVITLGTGIGSAFIFDGKLVPN--AELGHLEIDG-HDAETKASAVARER-----------D----------------- 191 (267)
T ss_dssp EEEEEEESSSEEEEEEETTEEETT--CCGGGCEETT-EEHHHHHSHHHHHH-----------T-----------------
T ss_pred cEEEEEECcceEEEEEECCEEccC--ceeeeEEecC-ccHHHHhCHHHHhh-----------c-----------------
Confidence 578999999999999998876654 221 1111 25677666654310 0
Q ss_pred cCchhhhhcccCCCcCHHHHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceE
Q 012386 322 LRTPHMSAMHHDTSPDLRVVGKKLKDILEISNTSLKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKS 401 (465)
Q Consensus 322 l~t~~ls~i~~d~s~~~~~~~~il~~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~aagiaaii~~~~~~~~~~~~~~~~ 401 (465)
...+++++++++.+|+++++.++| +
T Consensus 192 ---------------------------------------------~~~~~~~~~~l~~~l~~l~~~ldP--------~-- 216 (267)
T 1woq_A 192 ---------------------------------------------GLSWDEYSVLLQRYFSHVEFLFSP--------E-- 216 (267)
T ss_dssp ---------------------------------------------TCCHHHHHHHHHHHHHHHHHHHCC--------S--
T ss_pred ---------------------------------------------chhHHHHHHHHHHHHHHHHHHcCC--------C--
Confidence 001356778899999999999999 4
Q ss_pred EEEEecceeccchhHHHHHHHHHHHHhccCCCccEEEEEe---CChhHHHHHHHHHHhcc
Q 012386 402 VIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHS---NDGSGIGAALLAASHSQ 458 (465)
Q Consensus 402 ~V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l~~a---~Dgs~iGAAl~Aa~~~~ 458 (465)
.|+++|++....+.|.+.++ ..+.+..+ +|++.+|||.++....+
T Consensus 217 ~IvlgG~i~~~~~~~~~~~~------------~~~~i~~s~l~~~a~~~GAa~l~~~~~~ 264 (267)
T 1woq_A 217 LFIVGGGISKRADEYLPNLR------------LRTPIVPAVLRNEAGIVGAAIEIALQHK 264 (267)
T ss_dssp EEEEESGGGGGGGGTGGGCC------------CSSCEEECSCSTTHHHHHHHHHHHHHC-
T ss_pred EEEEeChhhcccHHHHHhhc------------cCceEEECCcCCcHHHHHHHHHHHhccc
Confidence 68899999998888776654 12345544 89999999998865443
No 28
>2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily, ribonuc fold, sugar kinase, glucose, phosphoryl transfer, transferase; HET: BGC; 1.65A {Sulfolobus tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A*
Probab=99.80 E-value=3.5e-19 Score=176.43 Aligned_cols=261 Identities=15% Similarity=0.145 Sum_probs=169.6
Q ss_pred eEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCCcccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCcceeeee
Q 012386 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFT 175 (465)
Q Consensus 96 ~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG~t 175 (465)
++|+||+|||++|+++++++|+ ++.+. +++.|.. ...+.+++++.|.+.+.+++.+. ...+|++
T Consensus 3 ~~lgiDiGgt~~~~~l~d~~g~---i~~~~--~~~~~~~-~~~~~~~~~~~i~~~i~~~~~~~----------~~~igi~ 66 (299)
T 2e2o_A 3 IIVGVDAGGTKTKAVAYDCEGN---FIGEG--SSGPGNY-HNVGLTRAIENIKEAVKIAAKGE----------ADVVGMG 66 (299)
T ss_dssp CEEEEEECSSCEEEEEECTTSC---EEEEE--EESCCCH-HHHCHHHHHHHHHHHHHHHHTSC----------CSEEEEE
T ss_pred EEEEEEeCCCcEEEEEEcCCCC---EEEEE--eCCCCCc-ccCCHHHHHHHHHHHHHHHHhcC----------CCEEEEE
Confidence 5899999999999999999874 66443 3444321 01357889999999998886431 3578999
Q ss_pred eecccccccCCceEEeccCCccccCCCCCCcHHHHHHHHHHHcCCCeeEEEEEechHHHhhcccccCCceEEEEEEcccc
Q 012386 176 FSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHNKDAIAAVILGTGT 255 (465)
Q Consensus 176 fSfPv~q~~i~~g~Li~wtKgF~~~~~~g~dv~~~L~~al~~~gl~v~v~alvNDtvatlla~~y~~~~~~iglIlGTG~ 255 (465)
+|+| +... +. .++.+.|++ + ++|| .+.||++++++++.+ .++.+.+++|||+
T Consensus 67 ~~G~-~~~~---~~---------------~~l~~~l~~-~---~~pv---~v~ND~~aaa~~e~~--~~~~v~l~~GTG~ 118 (299)
T 2e2o_A 67 VAGL-DSKF---DW---------------ENFTPLASL-I---APKV---IIQHDGVIALFAETL--GEPGVVVIAGTGS 118 (299)
T ss_dssp ETTC-CSHH---HH---------------HHHHHHHTT-S---SSEE---EEEEHHHHHHHHHHT--TSCEEEEEESSSE
T ss_pred cCCC-Cchh---HH---------------HHHHHHHHh-C---CCCE---EEeCcHHHHHhhccC--CCCeEEEEecCCE
Confidence 9999 6421 11 356666666 5 6775 899999999999976 5678999999994
Q ss_pred ceeEEccCCCCcccCC---C----CCCCCc------e-------eeeehhccccHHHHHHHHHHHHhhcccCCCCCCCCC
Q 012386 256 NAAYVERAHAIPKWHG---L----LPKSGE------M-------IFEKIISGMYLGEIVRRVLCRMAEEANFFGDTVPPK 315 (465)
Q Consensus 256 Na~yie~~~~i~k~~~---~----~~~~g~------~-------~fEkm~SG~YLGEi~R~~l~~~~~~~~lf~~~~~~~ 315 (465)
++ .+. +.+..+ + ...+|. . |+|.++|+..|-+.++. .+ +...+..
T Consensus 119 ---i~-~g~-~~G~~~~aGE~Gh~~~~~g~~c~cG~~gl~~~~~~le~~~s~~~l~~~~~~---~~-------~~~~~~~ 183 (299)
T 2e2o_A 119 ---VV-EGY-NGKEFLRVGGRGWLLSDDGSAYWVGRKALRKVLKMMDGLENKTILYNKVLK---TI-------NVKDLDE 183 (299)
T ss_dssp ---EE-EEE-CSSCEEEEECSCTTTCCTTSHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHH---HT-------TCCSHHH
T ss_pred ---EE-EEE-cCCeEEecCCcCCCcCCCccHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH---Hh-------CCCCHHH
Confidence 11 121 222211 1 111221 1 78888888887443322 11 0000000
Q ss_pred CCCCCccCchhhhhccc-CCC-cCH-HHHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 012386 316 LKIPFILRTPHMSAMHH-DTS-PDL-RVVGKKLKDILEISNTSLKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRDT 392 (465)
Q Consensus 316 l~~~~~l~t~~ls~i~~-d~s-~~~-~~~~~il~~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~aagiaaii~~~~~~~ 392 (465)
+ +..+.. +.. .++ .....+++. ++.++..|..+++++++++|.+|+++++.++|
T Consensus 184 l----------~~~~~~~~~~~~~~~~~~~~v~~~-----------a~~gd~~a~~il~~~~~~La~~i~~l~~~l~p-- 240 (299)
T 2e2o_A 184 L----------VMWSYTSSCQIDLVASIAKAVDEA-----------ANEGDTVAMDILKQGAELLASQAVYLARKIGT-- 240 (299)
T ss_dssp H----------HHHHHHHTTCHHHHHTTHHHHHHH-----------HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred H----------HHHHHcCCCCHHHHHHHHHHHHHH-----------HhcCCHHHHHHHHHHHHHHHHHHHHHHHhcCC--
Confidence 0 000000 000 000 012223322 56788999999999999999999999999998
Q ss_pred cCCCCCceEEEEEecceeccchhHHHHHHHHHHHHhccCCCccEEEEEeCChhHHHHHHHHH
Q 012386 393 VRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAA 454 (465)
Q Consensus 393 ~~~~~~~~~~V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l~~a~Dgs~iGAAl~Aa 454 (465)
+ .|+++||+... +.|.+.+++.+++. .+.....++++.+|||.++.
T Consensus 241 ------~--~IvlgGgv~~~-~~~~~~l~~~~~~~-------~i~~~~~~~~~~~GAa~la~ 286 (299)
T 2e2o_A 241 ------N--KVYLKGGMFRS-NIYHKFFTLYLEKE-------GIISDLGKRSPEIGAVILAY 286 (299)
T ss_dssp ------S--EEEEESGGGGS-HHHHHHHHHHHHHT-------TCEEECCSCCHHHHHHHHHH
T ss_pred ------C--EEEEECCccCc-HHHHHHHHHHCCCC-------eEeccCCCCChHHHHHHHHH
Confidence 4 58899999998 99999999988764 23221145899999998874
No 29
>1saz_A Probable butyrate kinase 2; askha (acetate and sugar kinases, HSC70, actin) superfamily, acetate kinase, isobutyrate kinase; HET: ACP; 2.50A {Thermotoga maritima} SCOP: c.55.1.2 c.55.1.2 PDB: 1x9j_A*
Probab=99.79 E-value=8.1e-19 Score=180.27 Aligned_cols=277 Identities=15% Similarity=0.134 Sum_probs=179.2
Q ss_pred eEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCCcccCCcchHHHHH---HHHHHHHHHhhCCCCCCCCCCccee
Q 012386 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYI---AAALAKFVATEGEGFHVSPGRQREL 172 (465)
Q Consensus 96 ~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~I---a~~I~~fl~~~~~~~~~~~~~~~~l 172 (465)
++|+||+|||++|+++++++ +++.+. +++.+.... .+.+++++.+ .+.|.+++++.+... .+...+
T Consensus 3 ~vlgidiGgt~ik~al~d~~----~il~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~l~~~~~~~----~~i~gI 71 (381)
T 1saz_A 3 RILTINPGSTSTKLSIFEDE----RMVKMQ--NFSHSPDEL-GRFQKILDQLEFREKIARQFVEETGYSL----SSFSAF 71 (381)
T ss_dssp EEEEEEECSSEEEEEEEETT----EEEEEE--EEECCHHHH-HTCSSGGGGHHHHHHHHHHHHHTTTCCG----GGCSEE
T ss_pred eEEEEECCccceeEEEEecc----hheeee--ecccCcccc-cchhhHHHHHHHHHHHHHHHHHHcCCCc----cCceEE
Confidence 58999999999999999963 355443 344432100 0234455666 888888887654321 346677
Q ss_pred eeeeecccccccCCceEEe-----------ccCCccccCCCCCCcHHHHHHHHHHHcCCCeeEEEEEechH---------
Q 012386 173 GFTFSFPVRQTSIASGDLI-----------KWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTI--------- 232 (465)
Q Consensus 173 G~tfSfPv~q~~i~~g~Li-----------~wtKgF~~~~~~g~dv~~~L~~al~~~gl~v~v~alvNDtv--------- 232 (465)
+++|+|++.. +|.+. .+.+-...+.. +.++.+.|++.+ ++|| .+.||++
T Consensus 72 -i~~pG~vd~~---~G~~~~i~~~~~~~l~~~~~~~~~~nl-~~~l~~~l~~~~---~~Pv---~v~NDan~~~~~~~a~ 140 (381)
T 1saz_A 72 -VSRGGLLDPI---PGGVYLVDGLMIKTLKSGKNGEHASNL-GAIIAHRFSSET---GVPA---YVVDPVVVDEMEDVAR 140 (381)
T ss_dssp -EEECCSCSCB---CSSEEECCHHHHHHHHHTTTCCCTTHH-HHHHHHHHHHHH---CCCE---EEESCTTBCCCCGGGT
T ss_pred -EecCCCCCCC---CCceEecCHHHHHHHHhcccccChhhh-hHHHHHHHHHhc---CCCE---EEeCCCccccCcHHHH
Confidence 8999999742 22220 01100011111 467778888888 9997 7999999
Q ss_pred HHhh-----------------cc-ccc----CCc--eEEEEEEccccceeEEccCCCCcccCCCCCCCCce---------
Q 012386 233 GTLA-----------------GG-RYH----NKD--AIAAVILGTGTNAAYVERAHAIPKWHGLLPKSGEM--------- 279 (465)
Q Consensus 233 atll-----------------a~-~y~----~~~--~~iglIlGTG~Na~yie~~~~i~k~~~~~~~~g~~--------- 279 (465)
++.+ ++ .+. +.+ +.+.+++|||+++|.+.+++.+.+..+.-.+ |.+
T Consensus 141 aaalp~~~r~~gfhgls~~~~aE~~~~g~~~~~~~~~~v~~~lGtGiG~g~i~~G~~~~G~~g~agE-Gh~~~~~~g~c~ 219 (381)
T 1saz_A 141 VSGHPNYQRKSIFHALNQKTVAKEVARMMNKRYEEMNLVVAHMGGGISIAAHRKGRVIDVNNALDGD-GPFTPERSGTLP 219 (381)
T ss_dssp BCSSTTCBCCCCSCHHHHHHHHHHHHHHTTCCGGGCEEEEEEESSSEEEEEEETTEEEEECCGGGTC-SSCCSSCCCSCC
T ss_pred HcCCcchhhhcccccccHHHHHHHHHHhcCCCCccCCEEEEEeCCCcEEEEEECCEEEEecCCCCCC-cceeeccCCCCC
Confidence 8888 87 442 345 8999999999999999998877665442222 332
Q ss_pred -------eeeehhccccHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccCchhhhhcccCCCcCHHHHHHHHhhhhccC
Q 012386 280 -------IFEKIISGMYLGEIVRRVLCRMAEEANFFGDTVPPKLKIPFILRTPHMSAMHHDTSPDLRVVGKKLKDILEIS 352 (465)
Q Consensus 280 -------~fEkm~SG~YLGEi~R~~l~~~~~~~~lf~~~~~~~l~~~~~l~t~~ls~i~~d~s~~~~~~~~il~~~~~~~ 352 (465)
|+|.++|+..|-+.+ .....+ .. .. .+.+ ..++++.
T Consensus 220 cg~l~~gc~e~~~S~~~l~~~~----------------------~~~~g~----~~-~~--~~~~---~~~i~~~----- 262 (381)
T 1saz_A 220 LTQLVDLCFSGKFTYEEMKKRI----------------------VGNGGL----VA-YL--GTSD---AREVVRR----- 262 (381)
T ss_dssp HHHHHHHHTSSCCCTTGGGSTT----------------------TTSCTH----HH-HH--SCCC---HHHHHHH-----
T ss_pred CcHHHHHHHHhCCCHHHHHHHH----------------------HhccCc----cc-cc--cCCC---HHHHHHH-----
Confidence 445544444441110 000000 00 00 0011 2233332
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCcCCCCCceEEEEEecceeccchhHHHHHHHHHHHHhcc
Q 012386 353 NTSLKMRKLVVELCDIVATRGARLSAAGIVGILKKL--GRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGE 430 (465)
Q Consensus 353 ~~~~~d~~~~~~ia~~V~~RaA~l~aagiaaii~~~--~~~~~~~~~~~~~~V~idGsv~~~~~~f~~~l~~~l~~~~~~ 430 (465)
++.++..|..+++++++++|.+|++++..+ +| + .|+++||+.+..+.|++.+++.++.+.
T Consensus 263 ------a~~gd~~a~~~l~~~~~~la~~i~~l~~~l~~~p--------~--~IvlgGgi~~~~~~l~~~i~~~l~~~~-- 324 (381)
T 1saz_A 263 ------IKQGDEWAKRVYRAMAYQIAKWIGKMAAVLKGEV--------D--FIVLTGGLAHEKEFLVPWITKRVSFIA-- 324 (381)
T ss_dssp ------HHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTTCC--------S--EEEEEEGGGGCTTTHHHHHHHHHTTTS--
T ss_pred ------HHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--------C--EEEEeCcCccChHHHHHHHHHHHHhhc--
Confidence 456778899999999999999999999999 77 4 688999999987779999999887642
Q ss_pred CCCccEEEEEeC---ChhHHHHHHHHH
Q 012386 431 EVSETVVIEHSN---DGSGIGAALLAA 454 (465)
Q Consensus 431 ~~~~~v~l~~a~---Dgs~iGAAl~Aa 454 (465)
.+.+.+++ |++.+|||.++.
T Consensus 325 ----~~~i~~~~~~~~a~~~GAa~l~~ 347 (381)
T 1saz_A 325 ----PVLVFPGSNEEKALALSALRVLR 347 (381)
T ss_dssp ----CEEEEEBCCHHHHHHHHHHHHHT
T ss_pred ----CeEEEecCcchhHHHHHHHHHHc
Confidence 46677663 578999998763
No 30
>3lm2_A Putative kinase; structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2, transf; HET: MSE; 1.70A {Agrobacterium tumefaciens}
Probab=99.76 E-value=9e-19 Score=167.27 Aligned_cols=204 Identities=19% Similarity=0.218 Sum_probs=139.1
Q ss_pred cceeEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCCcccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCccee
Q 012386 93 EKGLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQREL 172 (465)
Q Consensus 93 E~G~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~l 172 (465)
+.++++++|+||||+|+ ++++|+ +. .+.+.|.. .+.+++.+.|.+ ++++. +...+
T Consensus 4 ~~~~~lgiDIGGT~i~~--~d~~g~---~~----~~~~t~~~---~~~~~~~~~i~~----~i~~~---------~i~gi 58 (226)
T 3lm2_A 4 EDQTVLAIDIGGSHVKI--GLSTDG---EE----RKVESGKT---MTGPEMVAAVTA----MAKDM---------TYDVI 58 (226)
T ss_dssp GGCCEEEEEECSSEEEE--EETTTC---CE----EEEECCTT---CCHHHHHHHHHH----HTTTC---------CCSEE
T ss_pred cCCEEEEEEECCCEEEE--EECCCC---EE----EEEECCCC---CCHHHHHHHHHH----HHHhC---------CCCEE
Confidence 34689999999999994 666663 32 13455543 356666666554 43321 35789
Q ss_pred eeeeecccccccCCceEEeccCCcccc-CCCCCCcHHHHHHHHHHHcCCCeeEEEEEechHHHhhcccccCCceEEEEEE
Q 012386 173 GFTFSFPVRQTSIASGDLIKWTKGFSI-EDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHNKDAIAAVIL 251 (465)
Q Consensus 173 G~tfSfPv~q~~i~~g~Li~wtKgF~~-~~~~g~dv~~~L~~al~~~gl~v~v~alvNDtvatlla~~y~~~~~~iglIl 251 (465)
|+++|+|++..+ .+ .++- ++ +++.+.|+. +.+ ++|| .+.||+++..+++.+. ++.+.+++
T Consensus 59 gi~~pG~Vd~~~----~~-~~~~--nl~~~w~~~~l~----~~~---~~pv---~v~NDanaaalge~~~--~~~~~l~~ 119 (226)
T 3lm2_A 59 AMGYPGPVVHNK----PL-REPV--NLGEGWVGYDYE----GAF---GRPV---RIVNDALMQAIGSYNG--GRMLFLGL 119 (226)
T ss_dssp EEEESSCEETTE----EC-SCCT--TSCSCCTTCCHH----HHH---TSCE---EEEEHHHHHHHHHCCS--SEEEEEEE
T ss_pred EEEEEeEEECCe----EE-EECC--cCCccccCCchH----Hhc---CCeE---EEEEHHHHHHHHHhhc--CcEEEEEe
Confidence 999999997532 11 1110 22 234467774 455 8996 9999999999999876 68999999
Q ss_pred ccccceeEEccCCCCcccCCCCCCCCceeeeehhccccHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccCchhhhhcc
Q 012386 252 GTGTNAAYVERAHAIPKWHGLLPKSGEMIFEKIISGMYLGEIVRRVLCRMAEEANFFGDTVPPKLKIPFILRTPHMSAMH 331 (465)
Q Consensus 252 GTG~Na~yie~~~~i~k~~~~~~~~g~~~fEkm~SG~YLGEi~R~~l~~~~~~~~lf~~~~~~~l~~~~~l~t~~ls~i~ 331 (465)
|||++++++.+++.+++=-+.++-...-|+|.++|+..|- |. .
T Consensus 120 GtGiG~gii~~G~l~~GEiGH~~v~~~gclE~~~s~~al~---~~-----------------------~----------- 162 (226)
T 3lm2_A 120 GTGLGAAMIVENVAQPMEIAHLPYRKGKTYEHYVSEAYRE---KK-----------------------G----------- 162 (226)
T ss_dssp SSSEEEEEEETTEEEEECCTTSEEETTEEHHHHTCHHHHH---HH-----------------------C-----------
T ss_pred CCceEEEEEECCEEeeeeeeeEEecCCCcHHHHhCHHHHH---HH-----------------------H-----------
Confidence 9999999999887655111111111113788888877661 11 0
Q ss_pred cCCCcCHHHHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEecceec
Q 012386 332 HDTSPDLRVVGKKLKDILEISNTSLKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFE 411 (465)
Q Consensus 332 ~d~s~~~~~~~~il~~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~aagiaaii~~~~~~~~~~~~~~~~~V~idGsv~~ 411 (465)
-++++++++.+|+++++.++| + .|+++|++.+
T Consensus 163 --------------------------------------~~~~~~~L~~~la~l~~~~dP--------~--~IVlGG~~~~ 194 (226)
T 3lm2_A 163 --------------------------------------NAKWQKRVQDVVERLSAALEP--------D--EVVIGGGNVE 194 (226)
T ss_dssp --------------------------------------HHHHHHHHHHHHHHHHHHHCC--------S--EEEEESGGGG
T ss_pred --------------------------------------HHHHHHHHHHHHHHHHHHHCC--------C--EEEEeChhhh
Confidence 035678899999999999999 4 7889999999
Q ss_pred cchhHHHHHHHHHH
Q 012386 412 HYTKFSACMQSTVK 425 (465)
Q Consensus 412 ~~~~f~~~l~~~l~ 425 (465)
..+.|.+.+++.++
T Consensus 195 ~~~~~~~~i~~~~~ 208 (226)
T 3lm2_A 195 RLENLPPKCRRGDN 208 (226)
T ss_dssp GCCCCCTTEEECCT
T ss_pred hhhHHHHHHHHHHH
Confidence 99887766655443
No 31
>1zc6_A Probable N-acetylglucosamine kinase; NESG, Q7NU07_chrvo, CVR23, struc genomics, PSI, protein structure initiative; 2.20A {Chromobacterium violaceum} SCOP: c.55.1.5 c.55.1.5
Probab=99.71 E-value=1.1e-16 Score=159.20 Aligned_cols=267 Identities=16% Similarity=0.089 Sum_probs=156.2
Q ss_pred eEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCCcccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCc--ceee
Q 012386 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQ--RELG 173 (465)
Q Consensus 96 ~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~--~~lG 173 (465)
++|+||+|||++|+++++++|+ ++.+. +.+ |... ..+.+++++.+.+.|.+++++.+... .+. ..+|
T Consensus 12 ~~lGiDiGgT~i~~~l~d~~G~---il~~~--~~~-~~~~-~~~~~~~~~~l~~~i~~~l~~~~~~~----~~i~~~~ig 80 (305)
T 1zc6_A 12 YLIGVDGGGTGTRIRLHASDGT---PLAMA--EGG-ASAL-SQGIAKSWQAVLSTLEAAFQQAGLPA----APASACAIG 80 (305)
T ss_dssp EEEEEEECSSCEEEEEEETTCC---EEEEE--EES-CCCG-GGCHHHHHHHHHHHHHHHHHHTTCCC----CCGGGEEEE
T ss_pred EEEEEEcCccceEEEEEcCCCC---EEEEE--eCC-CCCc-ccCHHHHHHHHHHHHHHHHHhcCCCh----hhhccceEE
Confidence 7899999999999999999874 65433 121 2222 13578899999999999998765321 233 5789
Q ss_pred eeeecccccccCCceEEeccCCccccCCCCCCcHHHHHHHHHHHcCCCeeEEEEEechHHHhhcccccCCceEEEEEEcc
Q 012386 174 FTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHNKDAIAAVILGT 253 (465)
Q Consensus 174 ~tfSfPv~q~~i~~g~Li~wtKgF~~~~~~g~dv~~~L~~al~~~gl~v~v~alvNDtvatlla~~y~~~~~~iglIlGT 253 (465)
+++|+|++... |. + |++.+.+ ++|| .|.||++++++++. ..++.+.+++||
T Consensus 81 ig~pG~v~~~~--------~~-----------~----l~~~~~~-~~pv---~v~NDa~aaa~ge~--~~~~~v~v~~GT 131 (305)
T 1zc6_A 81 LGLSGVHNRQW--------AG-----------E----FESQAPG-FARL---SLATDGYTTLLGAH--GGQPGIIVALGT 131 (305)
T ss_dssp EEESCCCTTSH--------HH-----------H----HHHTCCC-CSEE---EEECHHHHHHHHHT--TTSSEEEEEESS
T ss_pred EEecCCCchHH--------HH-----------H----HHHhCCC-CceE---EEECCHHHHHHhhc--CCCCeEEEEecC
Confidence 99999987532 32 0 3332211 4564 99999999999973 346788999999
Q ss_pred ccceeEEc-cCCCCc--ccCCCCCCCCceeeeehhccccHHHHHHHHHHHHhh--cccCCCCCCCCCC----CCCCccCc
Q 012386 254 GTNAAYVE-RAHAIP--KWHGLLPKSGEMIFEKIISGMYLGEIVRRVLCRMAE--EANFFGDTVPPKL----KIPFILRT 324 (465)
Q Consensus 254 G~Na~yie-~~~~i~--k~~~~~~~~g~~~fEkm~SG~YLGEi~R~~l~~~~~--~~~lf~~~~~~~l----~~~~~l~t 324 (465)
|++++.+. ++.... +|.......| || +++.+..+..... ++.. .+..+ ...++.+.
T Consensus 132 Gigg~~i~~~G~~~~aGe~Gh~~~d~g--------~~---~~iG~~~~~~~~~~~~g~~----~~~~~~~~~~~~~~~~~ 196 (305)
T 1zc6_A 132 GSIGEALYPDGSHREAGGWGYPSGDEA--------SG---AWLGQRAAQLTQMALDGRH----SHSPLTRAVLDFVGGDW 196 (305)
T ss_dssp SEEEEEECTTSCEEEESCCCTTTSCTT--------SH---HHHHHHHHHHHHHHHHTSS----CCCHHHHHHHHHHTSSH
T ss_pred CeEEEEEeCCCcEEEecCcccccCCCc--------hH---HHHHHHHHHHHHHHHhCCC----CCChHHHHHHHHHCcCH
Confidence 99755555 554221 1211110111 22 3444444433211 1100 00000 00000000
Q ss_pred hhh-hhcccCCCcCHH-HHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEE
Q 012386 325 PHM-SAMHHDTSPDLR-VVGKKLKDILEISNTSLKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSV 402 (465)
Q Consensus 325 ~~l-s~i~~d~s~~~~-~~~~il~~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~aagiaaii~~~~~~~~~~~~~~~~~ 402 (465)
..+ ..+......... ....+++ .+ .++.+|..++++++++++.+|+++++. +| + .
T Consensus 197 ~~l~~~~~~~~~~~~~~~~~~v~~-----------~a-~GD~~A~~i~~~~~~~L~~~l~~l~~~-~p--------~--~ 253 (305)
T 1zc6_A 197 QAMMAWNGRATPAQFARLAPLVLS-----------AA-RVDPEADALLRQAGEDAWAIARALDPQ-DE--------L--P 253 (305)
T ss_dssp HHHHHHHHTCCHHHHHTTHHHHHH-----------HT-TTCHHHHHHHHHHHHHHHHHHHHHCTT-CC--------S--C
T ss_pred HHHHHHHhccCHHHHHHHHHHHHH-----------Hc-CCCHHHHHHHHHHHHHHHHHHHHHhcC-CC--------C--e
Confidence 000 000000000000 0111222 14 678999999999999999999999887 77 3 5
Q ss_pred EEEecceecc-chhHHHHHHHHHHHHhccCCCccEEEEEeCChhHHHHHHHHH
Q 012386 403 IALDGGLFEH-YTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAA 454 (465)
Q Consensus 403 V~idGsv~~~-~~~f~~~l~~~l~~~~~~~~~~~v~l~~a~Dgs~iGAAl~Aa 454 (465)
|+++||+... .|.|.+.+++. + ...++++.+|||++|.
T Consensus 254 VvlgGgv~~~~~~~l~~~l~~~----i----------~~~~~~~~~GAa~la~ 292 (305)
T 1zc6_A 254 VALCGGLGQALRDWLPPGFRQR----L----------VAPQGDSAQGALLLLQ 292 (305)
T ss_dssp EEEESHHHHHTGGGSCHHHHHH----C----------CCCSSCHHHHHHHHTC
T ss_pred EEEECCchHhHHHHHHHHHHhh----c----------cCCCCCHHHHHHHHHh
Confidence 8899999864 55666666553 1 2246889999998863
No 32
>1zbs_A Hypothetical protein PG1100; alpha-beta protein., structural genomics, PSI, protein struc initiative; 2.30A {Porphyromonas gingivalis} SCOP: c.55.1.5 c.55.1.5
Probab=99.71 E-value=4.9e-17 Score=160.77 Aligned_cols=270 Identities=13% Similarity=0.090 Sum_probs=156.8
Q ss_pred eEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCCcccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCcceeeee
Q 012386 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFT 175 (465)
Q Consensus 96 ~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG~t 175 (465)
+||+||+|||++|+++++ +|+ ++.+. +.+ |.+....+.+++++.|.+.+.+.+.. . ..+...+|++
T Consensus 1 ~~lgiDiGGT~~~~~l~d-~g~---il~~~--~~~-~~~~~~~~~~~~~~~i~~~i~~~~~~---~----~~~i~~igig 66 (291)
T 1zbs_A 1 MILIGDSGSTKTDWCIAK-EGK---SLGRF--QTS-GINPFQQDRNEIDTALRSEVLPAIGQ---K----ASSIRAVYFY 66 (291)
T ss_dssp CEEEEEECSSEEEEEEEE-TTE---EEEEE--EEE-CCCTTTSCHHHHHHHHTTTTHHHHTT---S----TTTCCEEEEE
T ss_pred CEEEEEeCccceEEEEEe-CCe---EEEEE--ECC-CCCcccCCHHHHHHHHHHHHHHHhCC---C----cccccEEEEE
Confidence 379999999999999999 773 66433 222 21221235778888888888776421 1 1235678999
Q ss_pred eecccccccCCceEEeccCCccccCCCCCCcHHHHHHHHHHHcCC--CeeEEEEEechHHHhhcccccCCceEEEEEEcc
Q 012386 176 FSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGL--DMRVAALVNDTIGTLAGGRYHNKDAIAAVILGT 253 (465)
Q Consensus 176 fSfPv~q~~i~~g~Li~wtKgF~~~~~~g~dv~~~L~~al~~~gl--~v~v~alvNDtvatlla~~y~~~~~~iglIlGT 253 (465)
.|+|+ .. .+ .++.+.|++.+ ++ | +.|.||++++++++. +.++.+.+|+||
T Consensus 67 ~pG~~-~~---~~----------------~~l~~~l~~~~---~~~~p---v~v~NDa~~aa~ge~--g~~~~v~v~~GT 118 (291)
T 1zbs_A 67 GAGCT-PA---KA----------------PMLNEALDSML---PHCDR---IEVAGDMLGAARALC--GDSEGIACILGT 118 (291)
T ss_dssp ETTCC-TT---TH----------------HHHHHHHHHHS---TTCSE---EEEECHHHHHHHHHT--TTSCEEEEEESS
T ss_pred CCCCC-hH---HH----------------HHHHHHHHHhc---CCCCc---EEEeCcHHHHHHhhc--CCCCcEEEEecC
Confidence 99986 21 11 26777777766 53 6 499999999999984 567889999999
Q ss_pred ccceeEE-ccCCCCcccCCCCCCCCceeeeehhccccHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCccCchhhhhccc
Q 012386 254 GTNAAYV-ERAHAIPKWHGLLPKSGEMIFEKIISGMYLGEIVRRVLCRMAEEANFFGDTVPPKLKIPFILRTPHMSAMHH 332 (465)
Q Consensus 254 G~Na~yi-e~~~~i~k~~~~~~~~g~~~fEkm~SG~YLGEi~R~~l~~~~~~~~lf~~~~~~~l~~~~~l~t~~ls~i~~ 332 (465)
|++++.+ .+++... -+++ |.+.-.. -|| +++-+..+....+.. . +..+. ........
T Consensus 119 Gigg~~i~~~G~~~~--aGe~---G~~~~d~-g~~---~~~G~~~~~~~~~~~-----~-~~~l~------~~~~~~~~- 176 (291)
T 1zbs_A 119 GSNSCLFDGREIKAN--VSPL---GYILGDE-GSG---AVLGRLFIGSLLKGQ-----M-PEGLC------EAFLQEYG- 176 (291)
T ss_dssp SEEEEEECSSSEEEE--CCCC---HHHHCCT-TSH---HHHHHHHHHHHHTTC-----S-CTTHH------HHHHHHTT-
T ss_pred ChheEEECCCCcEEE--eCCC---ccccCCC-chH---HHHHHHHHHHHHHcc-----C-CChHH------HHHHHHhC-
Confidence 9975554 5554321 0100 1111111 122 344444443332210 0 11110 00000000
Q ss_pred CCCcCHHHHHHHH-hhhhc---cCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCcCCCCCceEEEEE
Q 012386 333 DTSPDLRVVGKKL-KDILE---ISNTS--LKMRKLVVELCDIVATRGARLSAAGIVGILKKL-GRDTVRDGEKQKSVIAL 405 (465)
Q Consensus 333 d~s~~~~~~~~il-~~~~~---~~~~~--~~d~~~~~~ia~~V~~RaA~l~aagiaaii~~~-~~~~~~~~~~~~~~V~i 405 (465)
.+.......+ ....+ +.... .-+ +.++.+|..+++++++++|.+| .++.+ +| + .|++
T Consensus 177 ---~~~~~l~~~~~~~~~~~~~ia~~a~~v~~-~~GD~~A~~i~~~~~~~La~~i--~~~~~~~p--------~--~vvl 240 (291)
T 1zbs_A 177 ---LTSADIIESVYRKPFPNRFLAGFSPFIAQ-HLDIPAVYSLVQNSFDDFLVRN--VLRYNRPD--------L--PLHF 240 (291)
T ss_dssp ---CCHHHHHHHHHHSSCHHHHHHTTHHHHHT-TTTSHHHHHHHHHHHHHHHHHH--TGGGCCTT--------S--CEEE
T ss_pred ---cCHHHHHHHHHcCCCCHHHHHHhhHHHHH-hCCCHHHHHHHHHHHHHHHHHH--hcccCCCC--------c--eEEE
Confidence 0000000000 00000 00000 011 4678999999999999999999 44554 66 4 5889
Q ss_pred ecceeccchhHHHHHHHHHHHHhccCCCccEEEEEeCChhHHHHHHHHHH
Q 012386 406 DGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAAS 455 (465)
Q Consensus 406 dGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l~~a~Dgs~iGAAl~Aa~ 455 (465)
+||+++. |.+.+++.+++.. +++....++..+||+.+|.-
T Consensus 241 gGGv~~~---~~~~l~~~l~~~~-------~~i~~~~~a~~~GA~~la~~ 280 (291)
T 1zbs_A 241 IGSVAFH---YREVLSSVIKKRG-------LTLGSVLQSPMEGLIQYHHN 280 (291)
T ss_dssp ESHHHHH---THHHHHHHHHHTT-------CCEEEEESCSHHHHHHHHHH
T ss_pred ECchHHh---hHHHHHHHHHHcC-------CeecccCcCHHHHHHHHHHh
Confidence 9999876 6677888777643 23445569999999999754
No 33
>1zxo_A Conserved hypothetical protein Q8A1P1; NESG, BTR25, structural genomics, PSI, protein structure initiative; 3.20A {Bacteroides thetaiotaomicron} SCOP: c.55.1.5 c.55.1.5
Probab=99.70 E-value=2.6e-17 Score=162.75 Aligned_cols=262 Identities=16% Similarity=0.126 Sum_probs=143.3
Q ss_pred eEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCCcccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCcceeeee
Q 012386 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFT 175 (465)
Q Consensus 96 ~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG~t 175 (465)
+||+||+|||++|+++++ +|+ ++.+. +.+ |.+....+.+++++.|.+.+.+.+.. .+...+|++
T Consensus 1 ~~lgiDiGGT~i~~~l~d-~g~---il~~~--~~~-~~~~~~~~~~~~~~~i~~~i~~~~~~---------~~i~~igig 64 (291)
T 1zxo_A 1 MILIADSGSTKTDWCVVL-NGA---VIKRL--GTK-GINPFFQSEEEIQQKLTASLLPQLPE---------GKFNAVYFY 64 (291)
T ss_dssp ---CEECCTTCEEEEEEC-SSS---EEEEE--EEC-CCCTTTSCSTTTTTTTTC----------------------CEEE
T ss_pred CEEEEEeccccEEEEEEc-CCe---EEEEE--ECC-CCCcccCCHHHHHHHHHHHHHHhcCc---------ccccEEEEE
Confidence 379999999999999999 774 66443 222 11111224667777777777665422 235678888
Q ss_pred eecccccccCCceEEeccCCccccCCCCCCcHHHHHHHHHHHcC--CCeeEEEEEechHHHhhcccccCCceEEEEEEcc
Q 012386 176 FSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIG--LDMRVAALVNDTIGTLAGGRYHNKDAIAAVILGT 253 (465)
Q Consensus 176 fSfPv~q~~i~~g~Li~wtKgF~~~~~~g~dv~~~L~~al~~~g--l~v~v~alvNDtvatlla~~y~~~~~~iglIlGT 253 (465)
+|+++ ... +.++.+.|++.+ + .|| .|.||++++++++. +.++.+.+|+||
T Consensus 65 ~pG~~-~~~-------------------~~~l~~~l~~~~---~~~~pv---~v~NDa~~aalge~--g~~~~v~v~~GT 116 (291)
T 1zxo_A 65 GAGCT-PEK-------------------APVLRRAIADSL---PVIGNI---KANSDMLAAAHGLC--GQKAGIACILGT 116 (291)
T ss_dssp CTTCC-TTT-------------------THHHHHHHHHHS---CCCSCC---EEECSHHHHHHHTT--TTSCBEEEEESS
T ss_pred cCCCC-HHH-------------------HHHHHHHHHHhc---CCCceE---EEECcHHHHHHhhc--CCCCcEEEEeCC
Confidence 98886 211 136777777776 6 476 99999999999985 567789999999
Q ss_pred ccc-eeEEccCCCCc--ccCCCCCCCCceeeeehhccccHHHHHHHHHHHHhhcccCCCCCCCCCCCCC----CccCchh
Q 012386 254 GTN-AAYVERAHAIP--KWHGLLPKSGEMIFEKIISGMYLGEIVRRVLCRMAEEANFFGDTVPPKLKIP----FILRTPH 326 (465)
Q Consensus 254 G~N-a~yie~~~~i~--k~~~~~~~~g~~~fEkm~SG~YLGEi~R~~l~~~~~~~~lf~~~~~~~l~~~----~~l~t~~ 326 (465)
|++ ++++.+++... +|...+...| |+.++ -+..+....+.. . ++.|... +..+...
T Consensus 117 Gi~g~gi~~~G~~~~aGe~Gh~~~d~g--------~~~~~---G~~~~~~~~~~~-----~-~~~l~~~~~~~~~~~~~~ 179 (291)
T 1zxo_A 117 GSNSCFYNGKEIVSNISPLGFILGDEG--------SGAVL---GKLLVGDILKNQ-----L-PATLKEEFLKQFDLTPPE 179 (291)
T ss_dssp SEEEEEECSSSEEEECCCCCTTTSCCS--------SHHHH---HHHHHHHGGGTC-----S-CSHHHHHHHHHHTCCHHH
T ss_pred ChheEEECCCCcEEEeCCCccccCCCc--------hHHHH---HHHHHHHHHHcc-----C-CChHHHHHHHHhCCCHHH
Confidence 996 66665654432 2222111111 22222 222222211100 0 0000000 0000000
Q ss_pred hhh-cccCC-C-cCHH-HHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCcCCCCCceE
Q 012386 327 MSA-MHHDT-S-PDLR-VVGKKLKDILEISNTSLKMRKLVVELCDIVATRGARLSAAGIVGILKKL-GRDTVRDGEKQKS 401 (465)
Q Consensus 327 ls~-i~~d~-s-~~~~-~~~~il~~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~aagiaaii~~~-~~~~~~~~~~~~~ 401 (465)
+.. +.... + .++. ....+++ +.+|++|..+++++++++|.+| .++.+ +| +
T Consensus 180 l~~~~~~~~~~~~~ia~~a~~v~~-------------~~GD~~A~~i~~~~~~~La~~i--~~~~~~~p--------~-- 234 (291)
T 1zxo_A 180 IIDRVYRQPFPNRFLASLSPFIAQ-------------HLEEPAIRQLVMNSFIAFFRRN--VMQYDYKQ--------Y-- 234 (291)
T ss_dssp HGGGTTTSSCSTTTSSTTTHHHHT-------------TTTSTTTTHHHHHHHHHHHTTT--GGGSCTTT--------S--
T ss_pred HHHHHhcCCCCHHHHHHhhHHHHH-------------hCCCHHHHHHHHHHHHHHHHHH--hcccCCCC--------c--
Confidence 000 00000 0 0000 0011111 3467889999999999999999 34444 55 4
Q ss_pred EEEEecceeccchhHHHHHHHHHHHHhccCCCccEEEEEeCChhHHHHHHHH
Q 012386 402 VIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLA 453 (465)
Q Consensus 402 ~V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l~~a~Dgs~iGAAl~A 453 (465)
.|+++||+++. |.+.+++.+++ + .+.+..++|++.+|||.+|
T Consensus 235 ~vvlgGGv~~~---l~~~l~~~l~~---~----~~~i~~~~~a~~~GAa~la 276 (291)
T 1zxo_A 235 PVHFIGSIAYC---YKEILQDAARQ---T----GIQIGKILQSPMEGLIQYH 276 (291)
T ss_dssp CEEECSHHHHH---THHHHHHHTTT---T----TCCEEEECSCTHHHHHTTS
T ss_pred eEEEECcHHHH---HHHHHHHHHhc---C----CcEEeecCCCHHHHHHHHH
Confidence 58899999876 88888887765 1 2456677899999999875
No 34
>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A
Probab=97.78 E-value=0.0007 Score=65.33 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=21.3
Q ss_pred eEEEEEeCCceEEEEEEEecCCcceeEEE
Q 012386 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQ 124 (465)
Q Consensus 96 ~~LaiDlGGTNlRv~~V~l~g~~~~i~~~ 124 (465)
+|||||+|+||.++++++.++ .++..
T Consensus 2 ~~lGID~GsT~tk~av~d~~~---~il~~ 27 (276)
T 4ehu_A 2 YTMGLDIGSTASKGVILKNGE---DIVAS 27 (276)
T ss_dssp EEEEEEECSSCEEEEEEETTT---EEEEE
T ss_pred eEEEEEcCccEEEEEEEECCC---eEEEE
Confidence 589999999999999998766 36643
No 35
>3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO 11200H, transferase, PSI-2; 2.30A {Rhodospirillum rubrum}
Probab=97.76 E-value=7e-05 Score=79.26 Aligned_cols=96 Identities=21% Similarity=0.216 Sum_probs=65.0
Q ss_pred cceeEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeec--C-CCcccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCc
Q 012386 93 EKGLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSI--P-PHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQ 169 (465)
Q Consensus 93 E~G~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~i--p-~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~ 169 (465)
...++||||+|+|++|+++++.+|+ ++.+.+..++. | +.....+++++++.+.+++++++++.+... .++
T Consensus 5 ~~~~~lgIDiGtts~k~~l~d~~G~---il~~~~~~~~~~~p~~g~~e~dp~~~~~~i~~~i~~~~~~~~~~~----~~I 77 (508)
T 3ifr_A 5 QGRQVIGLDIGTTSTIAILVRLPDT---VVAVASRPTTLSSPHPGWAEEDPAQWWDNARAVLAELKTTAGESD----WRP 77 (508)
T ss_dssp --CEEEEEEECSSEEEEEEEETTTE---EEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHHCGGG----CCE
T ss_pred cCCEEEEEEecCcceEEEEECCCCC---EEEEEEEecceecCCCCceEECHHHHHHHHHHHHHHHHHhcCCCh----hhe
Confidence 3458999999999999999998774 66655333332 1 111234688999999999999998765322 457
Q ss_pred ceeeeeeec----ccccccCCceEEeccCC
Q 012386 170 RELGFTFSF----PVRQTSIASGDLIKWTK 195 (465)
Q Consensus 170 ~~lG~tfSf----Pv~q~~i~~g~Li~wtK 195 (465)
..||++... |++..+---.+.+.|..
T Consensus 78 ~~Igis~~~~~~v~~D~~G~~l~~~i~W~D 107 (508)
T 3ifr_A 78 GGICVTGMLPAVVLLDDRGAVLRPSIQQSD 107 (508)
T ss_dssp EEEEEEECSSCBEEECTTSCBCSCEECTTC
T ss_pred EEEEEECCCCcEEEECCCCCCcccceeccc
Confidence 888888888 88765421122345764
No 36
>1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5
Probab=97.63 E-value=0.0018 Score=62.65 Aligned_cols=27 Identities=19% Similarity=0.373 Sum_probs=22.6
Q ss_pred eEEEEEeCCceEEEEEEEecCCcceeEEEE
Q 012386 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQE 125 (465)
Q Consensus 96 ~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~ 125 (465)
+|||||+|+|++++++++.+| +++...
T Consensus 4 ~~lGiD~Gst~~k~~l~d~~g---~i~~~~ 30 (270)
T 1hux_A 4 YTLGIDVGSTASKCIILKDGK---EIVAKS 30 (270)
T ss_dssp EEEEEEECSSEEEEEEEETTT---EEEEEE
T ss_pred EEEEEEeccceEEEEEEeCCC---CEEEEE
Confidence 689999999999999998876 366543
No 37
>2p3r_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics,; 2.00A {Escherichia coli} PDB: 3ezw_A 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y*
Probab=97.58 E-value=0.00018 Score=76.10 Aligned_cols=84 Identities=18% Similarity=0.215 Sum_probs=58.8
Q ss_pred cceeEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeec--CCC-cccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCc
Q 012386 93 EKGLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSI--PPH-LMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQ 169 (465)
Q Consensus 93 E~G~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~i--p~~-~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~ 169 (465)
|..++||||+|+|++|+++++.+|+ ++.+.+..++. |.. ....+++++++.+.+++++.+++.+... .++
T Consensus 1 ~~~~~lgIDiGtts~k~~l~d~~G~---il~~~~~~~~~~~p~~g~~e~dp~~~~~~~~~~i~~~~~~~~~~~----~~I 73 (510)
T 2p3r_A 1 EKKYIVALDQGTTSSRAVVMDHDAN---IISVSQREFEQIYPKPGWVEHDPMEIWATQSSTLVEVLAKADISS----DQI 73 (510)
T ss_dssp CCCEEEEEEECSSEEEEEEECTTCC---EEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHTTCCG----GGE
T ss_pred CCcEEEEEEcCCcceEEEEECCCCC---EEEEEEEecccccCCCCcEEECHHHHHHHHHHHHHHHHHHcCCCh----hhe
Confidence 4568999999999999999998874 66554333321 111 1234678999999999999998765322 346
Q ss_pred ceeeeeeec----ccccc
Q 012386 170 RELGFTFSF----PVRQT 183 (465)
Q Consensus 170 ~~lG~tfSf----Pv~q~ 183 (465)
..||++... |++..
T Consensus 74 ~~Igis~~~~~~v~~D~~ 91 (510)
T 2p3r_A 74 AAIGITNQRETTIVWEKE 91 (510)
T ss_dssp EEEEEEECSSCBEEEETT
T ss_pred EEEEEeCCcCcEEEEECC
Confidence 677777764 67653
No 38
>4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.33A {Sinorhizobium meliloti}
Probab=97.58 E-value=0.00017 Score=76.42 Aligned_cols=94 Identities=16% Similarity=0.246 Sum_probs=63.4
Q ss_pred eeEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeec--CC-CcccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCcce
Q 012386 95 GLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSI--PP-HLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRE 171 (465)
Q Consensus 95 G~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~i--p~-~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~ 171 (465)
.++||||+|+|++|+++++.+|+ ++.+.+..++. |+ .....+++++++.+.++|++.+++.+... .++..
T Consensus 26 ~~~lgIDiGtts~k~~l~d~~G~---il~~~~~~~~~~~p~~g~~e~dp~~~~~~i~~~i~~~~~~~~~~~----~~I~~ 98 (520)
T 4e1j_A 26 GYILAIDQGTTSTRAIVFDGNQK---IAGVGQKEFKQHFPKSGWVEHDPEEIWQTVVSTVKEAIEKSGITA----NDIAA 98 (520)
T ss_dssp CEEEEEEECSSEEEEEEECTTSC---EEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHTTTCCG----GGEEE
T ss_pred CeEEEEEeCCcceEEEEECCCCC---EEEEEEEecccccCCCCcEEECHHHHHHHHHHHHHHHHHhcCCCc----ccEEE
Confidence 47999999999999999999884 66554333321 21 11234688999999999999988754322 45778
Q ss_pred eeeeeec----ccc-cccCCceEEeccCC
Q 012386 172 LGFTFSF----PVR-QTSIASGDLIKWTK 195 (465)
Q Consensus 172 lG~tfSf----Pv~-q~~i~~g~Li~wtK 195 (465)
||++... |++ .++.--.+.+.|..
T Consensus 99 Igis~~g~~~v~~D~~~G~~l~~~i~W~D 127 (520)
T 4e1j_A 99 IGITNQRETVVVWDRETGKPIHNAIVWQD 127 (520)
T ss_dssp EEEEECSSCEEEEETTTCCBSSCEECTTC
T ss_pred EEEeCCcceEEEEECCCCeECcccccccc
Confidence 8888877 777 45421122335753
No 39
>2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=97.46 E-value=0.00031 Score=73.96 Aligned_cols=92 Identities=23% Similarity=0.290 Sum_probs=61.5
Q ss_pred eEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeec--CCC-cccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCccee
Q 012386 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSI--PPH-LMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQREL 172 (465)
Q Consensus 96 ~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~i--p~~-~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~l 172 (465)
++||||+|||++|+++++.+|+ ++.+....++. |.. ....+++++++.+.++|++.+++.+... .++..|
T Consensus 3 ~~lgiDiGtT~~k~~l~d~~g~---i~~~~~~~~~~~~p~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~----~~i~~I 75 (495)
T 2dpn_A 3 FLLALDQGTTSSRAILFTLEGR---PVAVAKREFRQLYPKPGWVEHDPLEIWETTLWAAREVLRRAGAEA----GEVLAL 75 (495)
T ss_dssp CEEEEEECSSEEEEEEECTTSC---EEEEEEEECCEECSSTTCCEECHHHHHHHHHHHHHHHHHHTTCCG----GGCCEE
T ss_pred EEEEEeeCCcceEEEEECCCCC---EEEEEEEeeceecCCCCcEeeCHHHHHHHHHHHHHHHHHhcCCCc----ccEEEE
Confidence 6899999999999999998774 66554333321 211 1123678999999999999988754321 346778
Q ss_pred eeeee----cccccc-cCCceEEeccC
Q 012386 173 GFTFS----FPVRQT-SIASGDLIKWT 194 (465)
Q Consensus 173 G~tfS----fPv~q~-~i~~g~Li~wt 194 (465)
|++.. .|++.. +.--.+.+.|.
T Consensus 76 gis~~~~~~~~vD~~~G~~l~~~i~w~ 102 (495)
T 2dpn_A 76 GITNQRETTLLWDRKTGKPLHNAIVWQ 102 (495)
T ss_dssp EEEECSSCBEEEETTTCCBSSCEECTT
T ss_pred EEeCCCccEEEEECCCCcCCccceeec
Confidence 88888 478754 42112334685
No 40
>3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, struct genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A*
Probab=97.42 E-value=0.00035 Score=73.72 Aligned_cols=81 Identities=14% Similarity=0.223 Sum_probs=56.2
Q ss_pred eEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeec--CC-CcccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCccee
Q 012386 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSI--PP-HLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQREL 172 (465)
Q Consensus 96 ~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~i--p~-~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~l 172 (465)
++||||+|+|++|+++++.+|+ ++.+.+..++. |. .....+++++++.+.+++++.+++.+... .++..|
T Consensus 7 ~~lgIDiGtts~k~~l~d~~G~---il~~~~~~~~~~~p~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~----~~I~~I 79 (501)
T 3g25_A 7 YILSIDQGTTSSRAILFNQKGE---IAGVAQREFKQYFPQSGWVEHDANEIWTSVLAVMTEVINENDVRA----DQIAGI 79 (501)
T ss_dssp EEEEEEECSSEEEEEEECTTSC---EEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHTTTCCG----GGEEEE
T ss_pred EEEEEEeCccceEEEEEcCCCC---EEEEEEeecccccCCCCcEEECHHHHHHHHHHHHHHHHHhcCCCc----ccEEEE
Confidence 7999999999999999999884 66554333321 11 11234578999999999999988754322 346667
Q ss_pred eeeee----cccccc
Q 012386 173 GFTFS----FPVRQT 183 (465)
Q Consensus 173 G~tfS----fPv~q~ 183 (465)
|++.. .|++..
T Consensus 80 gis~~~~~~v~~D~~ 94 (501)
T 3g25_A 80 GITNQRETTVVWDKH 94 (501)
T ss_dssp EEEECSSCEEEEETT
T ss_pred EEECCcCcEEEEECC
Confidence 77654 467654
No 41
>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A
Probab=97.41 E-value=0.00045 Score=72.45 Aligned_cols=90 Identities=16% Similarity=0.295 Sum_probs=60.8
Q ss_pred eEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeec--CCC-cccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCccee
Q 012386 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSI--PPH-LMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQREL 172 (465)
Q Consensus 96 ~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~i--p~~-~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~l 172 (465)
+|||||+|||++|+++++.+|+ ++...+..+++ |+. ....+++++++.+.+++++.+++... .++..|
T Consensus 1 ~~lgiDiGtt~~k~~l~d~~g~---~l~~~~~~~~~~~p~~g~~e~d~~~~~~~i~~~i~~~~~~~~~------~~i~~I 71 (484)
T 2itm_A 1 MYIGIDLGTSGVKVILLNEQGE---VVAAQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKALGDQHSL------QDVKAL 71 (484)
T ss_dssp CEEEEEECSSEEEEEEECTTSC---EEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHSCC------TTCCEE
T ss_pred CEEEEEecCcccEEEEECCCCC---EEEEEEeccccccCCCCCEeECHHHHHHHHHHHHHHHHHhCCc------cceEEE
Confidence 4799999999999999998774 66554332221 111 11235789999999999999876421 347788
Q ss_pred eeeeec----ccccccCCceEEeccC
Q 012386 173 GFTFSF----PVRQTSIASGDLIKWT 194 (465)
Q Consensus 173 G~tfSf----Pv~q~~i~~g~Li~wt 194 (465)
|++... +++..+.--.+.+.|.
T Consensus 72 gis~~~~~~v~~D~~G~~l~~~i~w~ 97 (484)
T 2itm_A 72 GIAGQMHGATLLDAQQRVLRPAILWN 97 (484)
T ss_dssp EEEECSSCBEEECTTCCBCSCEECTT
T ss_pred EEcCCcCcEEEECCCcCCCcccceec
Confidence 998888 7776542222344574
No 42
>2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A*
Probab=97.41 E-value=0.00042 Score=73.12 Aligned_cols=90 Identities=9% Similarity=0.020 Sum_probs=60.9
Q ss_pred eEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCCc-----ccCCcchHHHHHHHHHHHHHHhh--CCCCCCCCCC
Q 012386 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHL-----MTGSSHELFDYIAAALAKFVATE--GEGFHVSPGR 168 (465)
Q Consensus 96 ~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~~-----~~~~~~~lfd~Ia~~I~~fl~~~--~~~~~~~~~~ 168 (465)
++||||+|||++|+++++.+|+ ++.+... +.|... ...+++++++.+.++|++.+++. +... .+
T Consensus 5 ~~lgIDiGtT~~k~~l~d~~g~---i~~~~~~--~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~~~----~~ 75 (503)
T 2w40_A 5 VILSIDQSTQSTKVFFYDEELN---IVHSNNL--NHEQKCLKPGWYEHDPIEIMTNLYNLMNEGIKVLKDKYTS----VI 75 (503)
T ss_dssp EEEEEEECSSEEEEEEEETTCC---EEEEEEE--ECCCBCCSTTCCEECHHHHHHHHHHHHHHHHHHHHHHSSS----CE
T ss_pred EEEEEEeCCcceEEEEECCCCC---EEEEEEE--eeeeecCCCCcEEECHHHHHHHHHHHHHHHHHHhhcCCCc----cc
Confidence 6899999999999999998874 6655533 333211 12357899999999999998764 3211 34
Q ss_pred cceeeeeee----cccccc-cCCceEEeccC
Q 012386 169 QRELGFTFS----FPVRQT-SIASGDLIKWT 194 (465)
Q Consensus 169 ~~~lG~tfS----fPv~q~-~i~~g~Li~wt 194 (465)
+..||++.. .|++.. +.--.+.+.|.
T Consensus 76 i~~Igis~~~~~~~~~D~~~G~~l~~~i~w~ 106 (503)
T 2w40_A 76 IKCIGITNQRETVIIWDRITGKPLYNAIVWL 106 (503)
T ss_dssp EEEEEEEECSSCEEEEETTTCCBSSCEECTT
T ss_pred eEEEEEcCCcceEEEEECCCCcCCccceeec
Confidence 778888887 478654 42112234575
No 43
>3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleoti binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O
Probab=97.41 E-value=0.00047 Score=72.82 Aligned_cols=83 Identities=18% Similarity=0.246 Sum_probs=56.7
Q ss_pred ceeEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeec--CC-CcccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCcc
Q 012386 94 KGLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSI--PP-HLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQR 170 (465)
Q Consensus 94 ~G~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~i--p~-~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~ 170 (465)
..++||||+|+|++|+++++.+|+ ++.+.+..++. |. .....+++++++.+.+++++.+++.+... .++.
T Consensus 4 ~~~~lgIDiGtts~k~~l~d~~G~---il~~~~~~~~~~~p~~g~~e~dp~~~~~~~~~~i~~~~~~~~~~~----~~I~ 76 (506)
T 3h3n_X 4 KNYVMAIDQGTTSSRAIIFDRNGK---KIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGAFIESGIRP----EAIA 76 (506)
T ss_dssp CCEEEEEEECSSEEEEEEEETTSC---EEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHHTCCG----GGEE
T ss_pred CCEEEEEEcCCCceEEEEECCCCC---EEEEEEEecCccCCCCCcEEECHHHHHHHHHHHHHHHHHHcCCCh----hheE
Confidence 347999999999999999999885 66554333321 11 11234688999999999999998765322 3456
Q ss_pred eeeeeee----cccccc
Q 012386 171 ELGFTFS----FPVRQT 183 (465)
Q Consensus 171 ~lG~tfS----fPv~q~ 183 (465)
.||++.. .|++..
T Consensus 77 ~Igis~~~~~~v~~D~~ 93 (506)
T 3h3n_X 77 GIGITNQRETTVVWDKT 93 (506)
T ss_dssp EEEEEECSSCBEEEETT
T ss_pred EEEeeCCcccEEEEeCC
Confidence 6666654 256653
No 44
>2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP}
Probab=97.40 E-value=0.00043 Score=73.06 Aligned_cols=79 Identities=11% Similarity=0.128 Sum_probs=57.5
Q ss_pred eEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCCc-----ccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCcc
Q 012386 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHL-----MTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQR 170 (465)
Q Consensus 96 ~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~~-----~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~ 170 (465)
++||||+|+|++|+++++.+|+ ++.+... +.|... ...+++++++.+.+++++.+++.+... .++.
T Consensus 3 ~~lgiDiGtts~k~~l~d~~G~---i~~~~~~--~~~~~~p~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~----~~i~ 73 (504)
T 2d4w_A 3 YVLAIDQGTTSSRAIVFDHSGE---IYSTGQL--EHDQIFPRAGWVEHNPEQIWNNVREVVGLALTRGNLTH----EDIA 73 (504)
T ss_dssp EEEEEEECSSEEEEEEECTTSC---EEEEEEE--ECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHTTCCG----GGEE
T ss_pred EEEEEecCCcceEEEEECCCCC---EEEEEEE--ecceecCCCCceeECHHHHHHHHHHHHHHHHHHcCCCc----ccEE
Confidence 6899999999999999998774 6655533 333211 123578999999999999988754321 3467
Q ss_pred eeeeeeec----ccccc
Q 012386 171 ELGFTFSF----PVRQT 183 (465)
Q Consensus 171 ~lG~tfSf----Pv~q~ 183 (465)
.||++... |++..
T Consensus 74 ~Igis~~g~~~v~vD~~ 90 (504)
T 2d4w_A 74 AVGITNQRETAVVWDKT 90 (504)
T ss_dssp EEEEEECSSCBEEEETT
T ss_pred EEEEeCCCCeEEEEECC
Confidence 88888886 77654
No 45
>2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis}
Probab=97.37 E-value=0.00048 Score=72.52 Aligned_cols=92 Identities=15% Similarity=0.149 Sum_probs=61.1
Q ss_pred eEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeec--CCC-cccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCccee
Q 012386 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSI--PPH-LMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQREL 172 (465)
Q Consensus 96 ~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~i--p~~-~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~l 172 (465)
++||||+|||++|+++++.+|+ ++.+.+..++. |.. ....+++++++.+.+++++.+++.+... .++..|
T Consensus 4 ~~lgiDiGtt~~k~~l~d~~g~---~~~~~~~~~~~~~p~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~----~~i~~I 76 (497)
T 2zf5_O 4 FVLSLDEGTTSARAIIFDRESN---IHGIGQYEFPQHYPRPGWVEHNPEEIWDAQLRAIKDAIQSARIEP----NQIAAI 76 (497)
T ss_dssp EEEEEEECSSEEEEEEECTTCC---EEEEEEEECCCBCCSTTCCEECHHHHHHHHHHHHHHHHHHHTCCG----GGEEEE
T ss_pred EEEEEecCCchhEEEEECCCCC---EEEEEEeccceecCCCCcEEECHHHHHHHHHHHHHHHHHhcCCCc----ccEEEE
Confidence 6899999999999999998774 66555333321 111 1123578999999999999998765322 346777
Q ss_pred eeeeec----ccccccCCceEEeccC
Q 012386 173 GFTFSF----PVRQTSIASGDLIKWT 194 (465)
Q Consensus 173 G~tfSf----Pv~q~~i~~g~Li~wt 194 (465)
|++... +++.++.--.+.+.|.
T Consensus 77 gis~~~~~~v~~D~~G~~l~~~i~w~ 102 (497)
T 2zf5_O 77 GVTNQRETTLVWDKDGKPLYNAIVWQ 102 (497)
T ss_dssp EEEECSSCEEEECTTCCBSSCEECTT
T ss_pred EEecCCCcEEEECCCCCCcccceeec
Confidence 887776 6666542212334574
No 46
>3ezw_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics, in SITU DATA collection, ATP-binding, kinase binding; 2.00A {Escherichia coli} PDB: 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y*
Probab=97.20 E-value=0.00072 Score=71.74 Aligned_cols=78 Identities=19% Similarity=0.254 Sum_probs=55.2
Q ss_pred CcceeEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeec--CC-CcccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCC
Q 012386 92 DEKGLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSI--PP-HLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGR 168 (465)
Q Consensus 92 ~E~G~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~i--p~-~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~ 168 (465)
+|+.||||||+|.|+.|+.+++.+|+ ++...+..+++ |. .....+++++++.+.++|++.+++.+... .+
T Consensus 1 tekkYvlgID~GTss~Ka~l~d~~G~---~va~~~~~~~~~~p~~G~~Eqdp~~~w~~~~~~i~~~l~~~~~~~----~~ 73 (526)
T 3ezw_A 1 TEKKYIVALDQGTTSSRAVVMDHDAN---IISVSQREFEQIYPKPGWVEHDPMEIWATQSSTLVEVLAKADISS----DQ 73 (526)
T ss_dssp --CCEEEEEEECSSEEEEEEECTTCC---EEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHHTCCG----GG
T ss_pred CCceEEEEEEccccceeeeEEcCCCC---EEEEEEEecCcccCCCCcEEECHHHHHHHHHHHHHHHHHHcCCCh----hh
Confidence 47889999999999999999998875 66555443332 21 11223678999999999999998876532 45
Q ss_pred cceeeeee
Q 012386 169 QRELGFTF 176 (465)
Q Consensus 169 ~~~lG~tf 176 (465)
+..|||+-
T Consensus 74 I~aIgis~ 81 (526)
T 3ezw_A 74 IAAIGITN 81 (526)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEeC
Confidence 66777753
No 47
>3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum, manolate, transferase, structural genomi 2; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A*
Probab=97.10 E-value=0.002 Score=68.14 Aligned_cols=92 Identities=11% Similarity=0.148 Sum_probs=59.3
Q ss_pred eEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeec--C-CCcccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCccee
Q 012386 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSI--P-PHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQREL 172 (465)
Q Consensus 96 ~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~i--p-~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~l 172 (465)
++||||+|+|++|+++++.+|+ ++...+..+++ | +.....+++++++.+.+++++.+ +.+... .++..|
T Consensus 6 ~~lgIDiGtts~k~~l~d~~G~---il~~~~~~~~~~~p~~g~~e~dp~~~~~~~~~~i~~~~-~~~~~~----~~I~~I 77 (511)
T 3hz6_A 6 YIATFDIGTTEVKAALADRDGG---LHFQRSIALETYGDGNGPVEQDAGDWYDAVQRIASSWW-QSGVDA----RRVSAI 77 (511)
T ss_dssp EEEEEEECSSEEEEEEECTTSC---EEEEEEEECCCBSTTSSCCEECHHHHHHHHHHHHHHHH-TTTCCG----GGEEEE
T ss_pred EEEEEEeCCCceEEEEECCCCC---EEEEEEeecceecCCCCCEEECHHHHHHHHHHHHHHHH-hcCCCh----hHeEEE
Confidence 7999999999999999998874 66555333321 1 11123468899999999999998 543221 346667
Q ss_pred eeeeec----ccccccCCceEEeccCC
Q 012386 173 GFTFSF----PVRQTSIASGDLIKWTK 195 (465)
Q Consensus 173 G~tfSf----Pv~q~~i~~g~Li~wtK 195 (465)
|++.-. +++..+---.+.+.|..
T Consensus 78 gis~q~~~~v~~D~~G~pl~~~i~W~D 104 (511)
T 3hz6_A 78 VLSGQMQNFLPLDQDHEPLHRAVLYSD 104 (511)
T ss_dssp EEEECCSCBEEECTTSCBSSCEECTTC
T ss_pred EEecccccEEEECCCcCCCcCceecCC
Confidence 766532 55654321223446764
No 48
>3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A*
Probab=96.99 E-value=0.0014 Score=69.95 Aligned_cols=74 Identities=24% Similarity=0.388 Sum_probs=52.0
Q ss_pred eeEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeec--C-CCcccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCcce
Q 012386 95 GLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSI--P-PHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRE 171 (465)
Q Consensus 95 G~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~i--p-~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~ 171 (465)
.++||||+|+|++|+++++.+|+ ++...+..+++ | +.....+++++++.+.++|++.+++.+... .++..
T Consensus 5 ~~~lgIDiGtts~ka~l~d~~G~---il~~~~~~~~~~~p~~g~~eqdp~~~~~~~~~~i~~~~~~~~~~~----~~I~~ 77 (554)
T 3l0q_A 5 SYFIGVDVGTGSARAGVFDLQGR---MVGQASREITMFKPKADFVEQSSENIWQAVCNAVRDAVNQADINP----IQVKG 77 (554)
T ss_dssp CEEEEEEECSSEEEEEEEETTSC---EEEEEEEECCCEEEETTEEEECHHHHHHHHHHHHHHHHHHHTCCG----GGEEE
T ss_pred cEEEEEEECcccEEEEEECCCCC---EEEEEEEecccccCCCCccccCHHHHHHHHHHHHHHHHHHcCCCH----hHEEE
Confidence 47999999999999999998774 66554333221 1 112234688999999999999998765422 34566
Q ss_pred eeee
Q 012386 172 LGFT 175 (465)
Q Consensus 172 lG~t 175 (465)
||++
T Consensus 78 Igis 81 (554)
T 3l0q_A 78 LGFD 81 (554)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 6664
No 49
>3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose, transferase, structural genomics, PSI-2, protein structure initiative; HET: ATP DXP XUL ADP; 2.00A {Lactobacillus acidophilus} PDB: 3gbt_A*
Probab=96.86 E-value=0.0031 Score=66.44 Aligned_cols=91 Identities=11% Similarity=0.221 Sum_probs=58.3
Q ss_pred eeEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeec--C-CCcccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCcce
Q 012386 95 GLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSI--P-PHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRE 171 (465)
Q Consensus 95 G~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~i--p-~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~ 171 (465)
.++||||+|+|++|+++++.+|+ ++...+..++. | +.....+++++++.+.+++++.+++.+ .++..
T Consensus 4 ~~~lgIDiGtts~K~~l~d~~G~---il~~~~~~~~~~~p~~g~~e~dp~~~~~~~~~~i~~~~~~~~-------~~I~~ 73 (504)
T 3ll3_A 4 KYIIGMDVGTTATKGVLYDINGK---AVASVSKGYPLIQTKVGQAEEDPKLIFDAVQEIIFDLTQKID-------GKIAA 73 (504)
T ss_dssp EEEEEEEECSSEEEEEEEETTSC---EEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHTCS-------SEEEE
T ss_pred CEEEEEEecCCceEEEEEcCCCC---EEEEEEeecceecCCCCcEEECHHHHHHHHHHHHHHHHHhCC-------CCeEE
Confidence 37999999999999999998874 66655333321 1 111234688999999999999987643 23566
Q ss_pred eeeeee----cccccccCCceEEeccCC
Q 012386 172 LGFTFS----FPVRQTSIASGDLIKWTK 195 (465)
Q Consensus 172 lG~tfS----fPv~q~~i~~g~Li~wtK 195 (465)
||++.- .+++.++---.+.+.|..
T Consensus 74 Igis~q~~~~v~~D~~G~pl~~~i~W~D 101 (504)
T 3ll3_A 74 ISWSSQMHSLIGLGSDDELLTNSITWAD 101 (504)
T ss_dssp EEEEECSSCBEEECTTSCBSSCEECTTC
T ss_pred EEEECCCCcEEEECCCCCCcccceeCCc
Confidence 666653 245554311123345653
No 50
>3jvp_A Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, sugar kinase, crsytal structure, structural genomics, protein structure initiative; HET: 5RP; 2.31A {Bacillus halodurans} PDB: 3qdk_A*
Probab=96.85 E-value=0.002 Score=69.08 Aligned_cols=75 Identities=12% Similarity=0.246 Sum_probs=51.5
Q ss_pred eeEEEEEeCCceEEEEEEEe-cCCcceeEEEEeeeee-------cC-------CCcccCCcchHHHHHHHHHHHHHHhhC
Q 012386 95 GLFYALDLGGTNFRVLRVQL-GGREGRVVKQEFEEVS-------IP-------PHLMTGSSHELFDYIAAALAKFVATEG 159 (465)
Q Consensus 95 G~~LaiDlGGTNlRv~~V~l-~g~~~~i~~~~~~~~~-------ip-------~~~~~~~~~~lfd~Ia~~I~~fl~~~~ 159 (465)
.++||||+|+|++|+++++. +|+ ++.+.+..++ .| ......+++++++.+.++|++.+++.+
T Consensus 5 ~~~lgIDiGTts~Ka~l~d~~~G~---i~~~~~~~~~~~~~~~~~p~~~~~~~~g~~eqdp~~~~~~~~~~i~~~l~~~~ 81 (572)
T 3jvp_A 5 KYTIGVDYGTESGRAVLIDLSNGQ---ELADHVTPYRHGVIDQYLPNTNIKLGHEWALQHPLDYVEVLTTSVPAVMKESG 81 (572)
T ss_dssp CEEEEEEECSSEEEEEEEETTTCC---EEEEEEEECTTCCBSSBSTTSCCBCCTTCCEECHHHHHHHHTTHHHHHHHC--
T ss_pred CEEEEEecCCcceEEEEEECCCCe---EEEEEEeccCCccccccCCccccCCCCCcEEECHHHHHHHHHHHHHHHHHHcC
Confidence 47999999999999999998 784 7766544443 12 112233577899999999999998754
Q ss_pred CCCCCCCCCcceeeeee
Q 012386 160 EGFHVSPGRQRELGFTF 176 (465)
Q Consensus 160 ~~~~~~~~~~~~lG~tf 176 (465)
... .++..|||+.
T Consensus 82 ~~~----~~I~~Igis~ 94 (572)
T 3jvp_A 82 VDA----DDVIGIGVDF 94 (572)
T ss_dssp -CC----SCEEEEEEEE
T ss_pred CCh----hHEEEEEEec
Confidence 322 3466666665
No 51
>2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer, hexokinas actin superfamily, L-rhamnulose kinase, rhamnose metabolism kinase; HET: LRH ADP; 1.55A {Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A*
Probab=96.69 E-value=0.0046 Score=64.74 Aligned_cols=78 Identities=21% Similarity=0.142 Sum_probs=52.2
Q ss_pred eeEEEEEeCCceEEEEEEEecCCcceeEEEEeeee--------ecCCCcccCCcchHHHHHHHHHHHHHHhhCCCCCCCC
Q 012386 95 GLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEV--------SIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSP 166 (465)
Q Consensus 95 G~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~--------~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~ 166 (465)
.+|||||+|+|++|+++++.+|+ ++......+ +.|... ..+.+++++.+.+++++.....
T Consensus 4 ~~~lgiDiGtts~k~~l~d~~g~---~~~~~~~~~~~~~~~~~~~~g~~-e~d~~~~~~~i~~~~~~~~~~~-------- 71 (489)
T 2uyt_A 4 RNCVAVDLGASSGRVMLARYERE---CRSLTLREIHRFNNGLHSQNGYV-TWDVDSLESAIRLGLNKVCAAG-------- 71 (489)
T ss_dssp EEEEEEEECSSEEEEEEEEEEGG---GTEEEEEEEEEEECCCEEETTEE-ECCHHHHHHHHHHHHHHHHHTT--------
T ss_pred ceEEEEEecCCCceEEEEEecCc---cceEEEEEEeecCCCccccCCeE-EECHHHHHHHHHHHHHHHHhCC--------
Confidence 36899999999999999998775 222111111 111111 2356789999998888876421
Q ss_pred CCcceeeeee----eccccccc
Q 012386 167 GRQRELGFTF----SFPVRQTS 184 (465)
Q Consensus 167 ~~~~~lG~tf----SfPv~q~~ 184 (465)
.++..||++. ..+++..+
T Consensus 72 ~~i~~Igis~q~~~~v~~D~~G 93 (489)
T 2uyt_A 72 IAIDSIGIDTWGVDFVLLDQQG 93 (489)
T ss_dssp CCCCEEEEEECSSCEEEECTTS
T ss_pred CCceEEEEecCcccEEEECCCC
Confidence 2477889988 88887654
No 52
>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703}
Probab=96.35 E-value=0.012 Score=62.14 Aligned_cols=86 Identities=13% Similarity=0.117 Sum_probs=57.2
Q ss_pred eeEEEEEeCCceEEEEEEE-ecCCcceeEEEEeeeeecCCCcccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCcceee
Q 012386 95 GLFYALDLGGTNFRVLRVQ-LGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELG 173 (465)
Q Consensus 95 G~~LaiDlGGTNlRv~~V~-l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG 173 (465)
.++||||+|+|++|+++++ .+|+ ++.+. ..+.|... ..+++++++.+.+++++. +. ..++..||
T Consensus 5 ~~~lgIDiGtts~ka~l~d~~~G~---i~~~~--~~~~~g~~-e~d~~~~~~~i~~~l~~~----~~-----~~~I~~Ig 69 (515)
T 3i8b_A 5 TLVAGVDTSTQSCKVRVTDAETGE---LVRFG--QAKHPNGT-SVDPSYWWSAFQEAAEQA----GG-----LDDVSALA 69 (515)
T ss_dssp CEEEEEEECSSEEEEEEEETTTCC---EEEEE--EEECCSSS-EECTHHHHHHHHHHHHHT----TC-----STTEEEEE
T ss_pred cEEEEEEeccccEEEEEEECCCCe---EEEEE--EEeCCCCc-eECHHHHHHHHHHHHHhc----CC-----ccCceEEE
Confidence 4799999999999999999 6774 66555 34455432 346788888887777643 21 13577788
Q ss_pred eeeec----ccccccCCceEEeccCC
Q 012386 174 FTFSF----PVRQTSIASGDLIKWTK 195 (465)
Q Consensus 174 ~tfSf----Pv~q~~i~~g~Li~wtK 195 (465)
++.-. +++.++---.+.+.|..
T Consensus 70 is~q~~~~v~~D~~G~pl~~~i~W~D 95 (515)
T 3i8b_A 70 VGGQQHGMVILDNQGNVIRDAMLWND 95 (515)
T ss_dssp EEECSSCBEEECTTSCBCSCEECTTC
T ss_pred EeCCcceEEEECCCCCCcCCcceecC
Confidence 87765 66665422233457863
No 53
>3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain 12444, SGX, transferase; 2.50A {Novosphingobium aromaticivorans}
Probab=96.29 E-value=0.0049 Score=64.67 Aligned_cols=70 Identities=13% Similarity=0.082 Sum_probs=47.2
Q ss_pred eEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeec-C-CCcccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCcceee
Q 012386 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSI-P-PHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELG 173 (465)
Q Consensus 96 ~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~i-p-~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG 173 (465)
+||+||+|+|++|+++++.+|+ ++...+..+++ | +.....+++++++.+.+++++.+ + .++..||
T Consensus 7 ~~lgIDiGTts~Ka~l~d~~G~---i~~~~~~~~~~~~~~g~~eqdp~~~~~~~~~~i~~~~-~---------~~I~aIg 73 (482)
T 3h6e_A 7 ATIVIDLGKTLSKVSLWDLDGR---MLDRQVRPSIPLEIDGIRRLDAPDTGRWLLDVLSRYA-D---------HPVTTIV 73 (482)
T ss_dssp -CEEEEECSSEEEEEEECTTSC---EEEEEEEECCCEESSSCEECCHHHHHHHHHHHHHHTT-T---------SCCCEEE
T ss_pred eEEEEEcCCCCeEEEEEECCCc---EEEEEEecCCcccCCCceeECHHHHHHHHHHHHHHHH-h---------cCCCEEE
Confidence 7899999999999999997764 66554333321 1 11123468899999999998876 2 1356677
Q ss_pred eeeec
Q 012386 174 FTFSF 178 (465)
Q Consensus 174 ~tfSf 178 (465)
|+...
T Consensus 74 is~~~ 78 (482)
T 3h6e_A 74 PVGHG 78 (482)
T ss_dssp EEECS
T ss_pred EecCc
Confidence 66543
No 54
>3bex_A Type III pantothenate kinase; actin-like fold, ATP-binding, coenzyme A biosynthesis, cytoplasm, metal-binding, nucleotide-binding, potassium; HET: PAU; 1.51A {Thermotoga maritima} SCOP: c.55.1.13 c.55.1.13 PDB: 3bf1_A* 3bf3_A* 2gtd_A
Probab=95.91 E-value=0.017 Score=55.13 Aligned_cols=123 Identities=15% Similarity=0.173 Sum_probs=67.2
Q ss_pred eEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCCcccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCcceeeee
Q 012386 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFT 175 (465)
Q Consensus 96 ~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG~t 175 (465)
.+|+||+|+||+++++++ ++ ++.. .+.+++.. ..+.+++..++.+.+.. .. .+...++++
T Consensus 4 M~L~IDIGNT~ik~gl~~-~~---~l~~----~~r~~T~~-~~t~de~~~~l~~l~~~----~~-------~~i~~i~Is 63 (249)
T 3bex_A 4 MYLLVDVGNTHSVFSITE-DG---KTFR----RWRLSTGV-FQTEDELFSHLHPLLGD----AM-------REIKGIGVA 63 (249)
T ss_dssp EEEEEEECSSEEEEEEES-SS---SSCE----EEEEECCT-TCCHHHHHHHHHHHHGG----GG-------GGEEEEEEE
T ss_pred eEEEEEECCCeEEEEEEE-CC---EEEE----EEEecCCC-CCCHHHHHHHHHHHHhh----cc-------ccCCEEEEE
Confidence 479999999999999996 23 2443 23444432 24567777666544332 10 123334444
Q ss_pred eecccccccCCceEEeccCCccccCCCCCCcHHHHHHHHHHHcCCCeeE---------EEEEe------chHHHhhcccc
Q 012386 176 FSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRV---------AALVN------DTIGTLAGGRY 240 (465)
Q Consensus 176 fSfPv~q~~i~~g~Li~wtKgF~~~~~~g~dv~~~L~~al~~~gl~v~v---------~alvN------Dtvatlla~~y 240 (465)
..-|-... .+.+.+++.+ +++..+ +...| |-.+.+++.+.
T Consensus 64 SVvp~~~~----------------------~~~~~~~~~~---~~~p~~v~~~~~gl~~~y~~P~~lG~DR~~~~~aa~~ 118 (249)
T 3bex_A 64 SVVPTQNT----------------------VIERFSQKYF---HISPIWVKAKNGCVKWNVKNPSEVGADRVANVVAFVK 118 (249)
T ss_dssp ESCHHHHH----------------------HHHHHHHHHH---SCCCEECCCCSSSSEECSSCGGGSCHHHHHHHHHHHH
T ss_pred cCcHHHHH----------------------HHHHHHHHhc---CCCeEEEEccCCCceeccCChhhcCHHHHHHHHHHHH
Confidence 44442110 0112222222 221100 13344 66677777654
Q ss_pred cCCceEEEEEEccccceeEEccC
Q 012386 241 HNKDAIAAVILGTGTNAAYVERA 263 (465)
Q Consensus 241 ~~~~~~iglIlGTG~Na~yie~~ 263 (465)
......+-+-+||.+...++.++
T Consensus 119 ~~~~~~iVvD~GTA~T~d~v~~g 141 (249)
T 3bex_A 119 EYGKNGIIIDMGTATTVDLVVNG 141 (249)
T ss_dssp HTCSCEEEEEESSEEEEEEEETT
T ss_pred HcCCCEEEEEcCCceEEEEEeCC
Confidence 44567889999999999999443
No 55
>3djc_A Type III pantothenate kinase; structural genomics, putative transfera 2, protein structure initiative; 2.40A {Legionella pneumophila subsp}
Probab=93.91 E-value=0.1 Score=50.24 Aligned_cols=66 Identities=14% Similarity=0.152 Sum_probs=40.0
Q ss_pred eEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCCcccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCcceeeee
Q 012386 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFT 175 (465)
Q Consensus 96 ~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG~t 175 (465)
.+|+||+|+||+++++++- + +++. ++.+|+. ..+.+++ +..+.++++..+... .+...++++
T Consensus 3 MlL~IDIGNT~iK~gl~d~-~---~l~~----~~r~~T~--~~t~de~----~~~l~~ll~~~~~~~----~~I~~iiIS 64 (266)
T 3djc_A 3 LILCIDVGNSHIYGGVFDG-D---EIKL----RFRHTSK--VSTSDEL----GIFLKSVLRENNCSP----ETIRKIAIC 64 (266)
T ss_dssp CEEEEEECSSEEEEEEEET-T---EEEE----EEEEECS--CCCHHHH----HHHHHHHHHTTTCCG----GGCCEEEEE
T ss_pred eEEEEEECCCeEEEEEEEC-C---EEEE----EEEecCC--CCCHHHH----HHHHHHHHHHcCCCh----hhceEEEEe
Confidence 4799999999999999963 2 3553 4556655 2456554 444566666554321 234455555
Q ss_pred eecc
Q 012386 176 FSFP 179 (465)
Q Consensus 176 fSfP 179 (465)
...|
T Consensus 65 SVvp 68 (266)
T 3djc_A 65 SVVP 68 (266)
T ss_dssp ESCH
T ss_pred cchH
Confidence 5544
No 56
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus}
Probab=93.11 E-value=2.1 Score=42.37 Aligned_cols=55 Identities=13% Similarity=0.117 Sum_probs=37.4
Q ss_pred cHHHHHHHHHHHcCCCeeEEEEEechHHHhhcccc--c--CCceEEEEEEcccc-ceeEEcc
Q 012386 206 DVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRY--H--NKDAIAAVILGTGT-NAAYVER 262 (465)
Q Consensus 206 dv~~~L~~al~~~gl~v~v~alvNDtvatlla~~y--~--~~~~~iglIlGTG~-Na~yie~ 262 (465)
+.++.+.+++++.|+++ ..++|...|++.+..+ . .....+-+=+|-|+ ..+++..
T Consensus 151 ~~v~~~~~~~~~aGl~~--~~i~~ep~Aaa~~~~~~~~~~~~~~~~vvDiGggttdi~i~~~ 210 (377)
T 2ych_A 151 EAVAGVLEALRGAGLVP--VVLDVKPFAGLYPLEARLAEEPDRVFLVLDIGAESTSLVLLRG 210 (377)
T ss_dssp HHHHHHHHHHHHTTCEE--EEEEEHHHHTTGGGHHHHHTSTTCEEEEEEECSSCEEEEEEET
T ss_pred HHHHHHHHHHHHCCCce--EEEecchHHHHHHHHhhcccccCCeEEEEEECCCcEEEEEEEC
Confidence 34577888888778875 7899999998876432 1 13445566688888 5555544
No 57
>2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A*
Probab=92.75 E-value=7.9 Score=37.88 Aligned_cols=136 Identities=11% Similarity=0.118 Sum_probs=68.2
Q ss_pred eEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCC-ccc-CCcchHHHHHHHHHHHHHHhhCCCCCCCCCCcceee
Q 012386 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPH-LMT-GSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELG 173 (465)
Q Consensus 96 ~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~-~~~-~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG 173 (465)
.+||||.+.+...+++++- | +++......+.-+.. ... .....-.+.+...|++.+++.+... ++...+.
T Consensus 2 ~iLgIdts~~~~~val~~~-g---~i~~~~~~~~~~~~gg~~p~~~~~~h~~~l~~~i~~~L~~agi~~----~did~Ia 73 (330)
T 2ivn_A 2 LALGIEGTAHTLGIGIVSE-D---KVLANVFDTLTTEKGGIHPKEAAEHHARLMKPLLRKALSEAGVSL----DDIDVIA 73 (330)
T ss_dssp CEEEEECSSSEEEEEEECS-S---CEEEEEEEECCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHTCCT----TTCCEEE
T ss_pred EEEEEEccCCCeEEEEEEC-C---EEEEEEEEEeecccCCcCchhhHHHHHHHHHHHHHHHHHHcCCCH----HHCcEEE
Confidence 4799999999999999963 3 355433222221111 000 0011223445556677777666533 3455666
Q ss_pred eeeecccccccCCceEEeccCCccccCCCCCCcHHHHHHHHHHHcCCCeeEEEEEechHHHhhcccccCC-ceEEEEEEc
Q 012386 174 FTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHNK-DAIAAVILG 252 (465)
Q Consensus 174 ~tfSfPv~q~~i~~g~Li~wtKgF~~~~~~g~dv~~~L~~al~~~gl~v~v~alvNDtvatlla~~y~~~-~~~iglIlG 252 (465)
+| .+|=..+++ . .|....+.|..++ ++|+ .-+|--.+-+++..| .+ +..+.+++.
T Consensus 74 ~~-~GPG~~~~l------------r----vg~~~ak~la~~~---~~pl---~~v~h~~aHa~~a~~-~~~~~~~~l~v~ 129 (330)
T 2ivn_A 74 FS-QGPGLGPAL------------R----VVATAARALAVKY---RKPI---VGVNHCIAHVEITKM-FGVKDPVGLYVS 129 (330)
T ss_dssp EE-EESSCHHHH------------H----HHHHHHHHHHHHT---TCCE---EEEEHHHHHHHGGGG-GTCCSCEEEEEC
T ss_pred EE-CCCCchHHH------------H----HHHHHHHHHHHHc---CCCE---EeeCcHHHHHHHHhh-cCCCCCeEEEEc
Confidence 55 234211111 0 1223444444444 6775 455665666666555 22 222566666
Q ss_pred cccceeEEccC
Q 012386 253 TGTNAAYVERA 263 (465)
Q Consensus 253 TG~Na~yie~~ 263 (465)
-|....|..+.
T Consensus 130 GG~t~~i~~~~ 140 (330)
T 2ivn_A 130 GGNTQVLALEG 140 (330)
T ss_dssp SSCEEEEEEET
T ss_pred CCCceEEEEcC
Confidence 68555444333
No 58
>2h3g_X Biosynthetic protein; pantothenate kinase, anthrax, type III pantothenate kinase, COAX, COAA, askha; 2.00A {Bacillus anthracis str}
Probab=92.63 E-value=0.55 Score=45.13 Aligned_cols=50 Identities=18% Similarity=0.284 Sum_probs=31.4
Q ss_pred EEEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCCcccCCcchHHHHHHHHHHHHHHhhC
Q 012386 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEG 159 (465)
Q Consensus 97 ~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~ 159 (465)
+|+||+|+||+++++++ ++ ++.. .+.+++.. ..+.+++..++ .++++.++
T Consensus 2 lL~IDIGNT~ik~gl~~-~~---~l~~----~~r~~T~~-~~t~de~~~~l----~~ll~~~~ 51 (268)
T 2h3g_X 2 IFVLDVGNTNAVLGVFE-EG---ELRQ----HWRMETDR-HKTEDEYGMLV----KQLLEHEG 51 (268)
T ss_dssp EEEEEECSSEEEEEEEE-TT---EEEE----EEEEECCT-TCCHHHHHHHH----HHHHHHTT
T ss_pred EEEEEECcCcEEEEEEE-CC---EEEE----EEEecCCC-cCCHHHHHHHH----HHHHHHcC
Confidence 68999999999999997 22 3543 34455432 23566665555 44555444
No 59
>4bc3_A Xylulose kinase; transferase, glucuronate xylulokinase pathway; HET: MSE EDO; 1.68A {Homo sapiens} PDB: 4bc2_A* 4bc4_A* 4bc5_A*
Probab=92.54 E-value=0.26 Score=52.04 Aligned_cols=33 Identities=15% Similarity=0.121 Sum_probs=26.6
Q ss_pred eeEEEEEeCCceEEEEEEEecCCcceeEEEEeeeee
Q 012386 95 GLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVS 130 (465)
Q Consensus 95 G~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ 130 (465)
.+|||||+|.|++|+.+++.+|+ ++...+..++
T Consensus 10 ~~~lgID~GTts~Ka~l~d~~G~---vv~~~~~~~~ 42 (538)
T 4bc3_A 10 RCCLGWDFSTQQVKVVAVDAELN---VFYEESVHFD 42 (538)
T ss_dssp CEEEEEEECSSEEEEEEEETTCC---EEEEEEEEHH
T ss_pred CEEEEEEEcCcCEEEEEECCCCC---EEEEEEEecC
Confidence 38999999999999999998774 7766655543
No 60
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid}
Probab=91.32 E-value=2.6 Score=39.61 Aligned_cols=43 Identities=19% Similarity=0.283 Sum_probs=27.1
Q ss_pred HHHHHHHHHcCCCeeEEEEEechHHHhhcccccCCceEEEEEEccccc
Q 012386 209 GELTKAMERIGLDMRVAALVNDTIGTLAGGRYHNKDAIAAVILGTGTN 256 (465)
Q Consensus 209 ~~L~~al~~~gl~v~v~alvNDtvatlla~~y~~~~~~iglIlGTG~N 256 (465)
+.+++++++.|+++ ..++++..|++.+.... ..+-+=+|-|+.
T Consensus 109 ~~~~~~~~~~g~~~--~~i~~e~~A~a~~~~~~---~~~viDiGggst 151 (272)
T 3h1q_A 109 EACGHVVAGAGLEL--VTLVDEPVAAARALGIN---DGIVVDIGGGTT 151 (272)
T ss_dssp THHHHHHHHTTCEE--EEEECHHHHHHHHHTCS---SEEEEEECSSCE
T ss_pred HHHHHHHHHcCCee--eecccHHHHHHHHHcCC---CEEEEEECCCcE
Confidence 34566666668875 68999999988764332 223344566653
No 61
>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var}
Probab=87.58 E-value=2.3 Score=42.72 Aligned_cols=49 Identities=14% Similarity=0.165 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHcCCCeeEEEEEechHHHhhcccccC-----CceEEEEEEccccce
Q 012386 207 VVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHN-----KDAIAAVILGTGTNA 257 (465)
Q Consensus 207 v~~~L~~al~~~gl~v~v~alvNDtvatlla~~y~~-----~~~~iglIlGTG~Na 257 (465)
-.+.++++.++-|+++ +.++|+..|++++..... ....+-+=+|-||--
T Consensus 165 ~r~~~~~a~~~AGl~~--~~li~Ep~AAa~~~~~~~~~~~~~~~vlv~D~GgGT~d 218 (409)
T 4gni_A 165 QKAALIAAAAAADLEV--LQLISEPAAAVLAYDARPEATISDKIIVVADLGGSRSD 218 (409)
T ss_dssp HHHHHHHHHHHTTCEE--EEEEEHHHHHHHHTTC------CCEEEEEEEECSSCEE
T ss_pred HHHHHHHHHHHcCCCe--EEEEcCHHHHHHHHhcccccCCCCCEEEEEECCCCceE
Confidence 4577888888778864 799999999998865532 334444457888743
No 62
>4ijn_A Acetate kinase, acetokinase; proprionate kinase, ATP-dependent, metabolic intermediate biosynthesis, acetyl-COA biosynthesis, hydrolysis; HET: AMP; 1.70A {Mycobacterium smegmatis}
Probab=87.45 E-value=0.35 Score=49.02 Aligned_cols=57 Identities=16% Similarity=0.061 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEecceeccchhHHHHHHHHHH
Q 012386 360 KLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVK 425 (465)
Q Consensus 360 ~~~~~ia~~V~~RaA~l~aagiaaii~~~~~~~~~~~~~~~~~V~idGsv~~~~~~f~~~l~~~l~ 425 (465)
+.+++-|+.+++-.++-++-.|.++...++.. + .|++.||+-++.+.+++.+.+.+.
T Consensus 293 ~~Gd~~A~la~d~f~yriak~Iga~aa~LG~v-------D--aIVfTGGIgEns~~vr~~I~~~l~ 349 (398)
T 4ijn_A 293 ESGDEHAKLAYDVYIHRLRKYIGAYMAVLGRT-------D--VISFTAGVGENVPPVRRDALAGLG 349 (398)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHHHHHHSSC-------C--EEEEEHHHHHHCHHHHHHHHTTCG
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCC-------c--EEEECCccccccHHHHHHHHHHHh
Confidence 34556677777777777777777777777432 3 789999999999999999988774
No 63
>3qfu_A 78 kDa glucose-regulated protein homolog; HSP70, KAR2, BIP, chaperone; HET: ADP; 1.80A {Saccharomyces cerevisiae} PDB: 3qfp_A 3qml_A 3ldo_A* 3ldl_A 3ldn_A* 3ldp_A*
Probab=85.73 E-value=2.4 Score=42.09 Aligned_cols=48 Identities=21% Similarity=0.185 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHcCCCeeEEEEEechHHHhhccccc-C--CceEEEEEEccccc
Q 012386 207 VVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH-N--KDAIAAVILGTGTN 256 (465)
Q Consensus 207 v~~~L~~al~~~gl~v~v~alvNDtvatlla~~y~-~--~~~~iglIlGTG~N 256 (465)
-.+.+.++.++.|+++ +.++|+..|++++.... . ....+-+=+|-||-
T Consensus 168 ~r~~~~~a~~~aGl~~--~~li~Ep~Aaa~~~~~~~~~~~~~vlV~D~Gggt~ 218 (394)
T 3qfu_A 168 QRQATKDAGTIAGLNV--LRIVNEPTAAAIAYGLDKSDKEHQIIVYDLGGGTF 218 (394)
T ss_dssp HHHHHHHHHHHTTCEE--EEEEEHHHHHHHHTTTTSCSSCEEEEEEEECSSCE
T ss_pred HHHHHHHHHHHcCCce--EEEecCHHHHHHHHhhccCCCCceEEEEEcCCCce
Confidence 4567777877778864 79999999999876432 2 23444445777774
No 64
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ...
Probab=85.63 E-value=3 Score=41.69 Aligned_cols=52 Identities=15% Similarity=0.176 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHcCCCeeEEEEEechHHHhhccccc------CCceEEEEEEccccc-eeEE
Q 012386 207 VVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH------NKDAIAAVILGTGTN-AAYV 260 (465)
Q Consensus 207 v~~~L~~al~~~gl~v~v~alvNDtvatlla~~y~------~~~~~iglIlGTG~N-a~yi 260 (465)
-.+.+.++.++.|+++ +.++|+..|++++.... .....+-+=+|-||- .+.+
T Consensus 173 ~r~~~~~a~~~AGl~~--~~li~Ep~AAa~~~~~~~~~~~~~~~~vlV~D~GgGT~dvsv~ 231 (404)
T 3i33_A 173 QRQATKDAGTITGLNV--LRIINEPTAAAIAYGLDKKGCAGGEKNVLIFDLGGGTFDVSIL 231 (404)
T ss_dssp HHHHHHHHHHHHTCEE--EEEEEHHHHHHHHTTTTSSCSSSSCCEEEEEEECSSCEEEEEE
T ss_pred HHHHHHHHHHHcCCCe--EEEeccHHHHHHHHHhhcccccCCCceEEEEECCCCcEEEEEE
Confidence 4567778877778864 79999999999875543 233445455788884 4433
No 65
>3ezw_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics, in SITU DATA collection, ATP-binding, kinase binding; 2.00A {Escherichia coli} PDB: 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y*
Probab=83.09 E-value=5.6 Score=41.60 Aligned_cols=77 Identities=16% Similarity=0.144 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEecceeccchhHHHHHHHHHHHHhccCCCccEEEEEeCCh
Q 012386 365 LCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDG 444 (465)
Q Consensus 365 ia~~V~~RaA~l~aagiaaii~~~~~~~~~~~~~~~~~V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l~~a~Dg 444 (465)
+++++++=-|.-+...+-++-...+.. .+ .|.++||.. +.+.+.+.+.+.+ + ..|.+-...++
T Consensus 376 i~RAvlEgia~~~r~~le~l~~~~g~~------~~--~i~v~GGga-ks~~~~Qi~ADvl----g----~pV~~~~~~E~ 438 (526)
T 3ezw_A 376 IIRATLESIAYQTRDVLEAMQADSGIR------LH--ALRVDGGAV-ANNFLMQFQSDIL----G----TRVERPEVREV 438 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCC------CS--EEEEESGGG-GCHHHHHHHHHHH----T----SEEEEESCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC------CC--EEEEECchh-hCHHHHHHHHHHH----C----CEEEeCCCCch
Confidence 445555544444444444443334431 13 466677765 6787877766654 2 35655556889
Q ss_pred hHHHHHHHHHHhcc
Q 012386 445 SGIGAALLAASHSQ 458 (465)
Q Consensus 445 s~iGAAl~Aa~~~~ 458 (465)
+.+|||++|+++.-
T Consensus 439 ~alGAA~lA~~a~G 452 (526)
T 3ezw_A 439 TALGAAYLAGLAVG 452 (526)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999998874
No 66
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A*
Probab=82.10 E-value=26 Score=35.38 Aligned_cols=55 Identities=13% Similarity=0.037 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHcCCCeeEEEEEechHHHhhcccccC--CceEEEEEEcccc-ceeEEccC
Q 012386 207 VVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHN--KDAIAAVILGTGT-NAAYVERA 263 (465)
Q Consensus 207 v~~~L~~al~~~gl~v~v~alvNDtvatlla~~y~~--~~~~iglIlGTG~-Na~yie~~ 263 (465)
.++-+.+++++-|+++ ..++|...|+.++....+ +...+-+=+|-|| +.+++.++
T Consensus 169 ~v~n~~~~~~~AGL~v--~~lv~ep~Aaa~a~l~~~~~~~gv~vvDiGggttdisi~~~g 226 (419)
T 4a2a_A 169 VYEMFYNFLQDTVKSP--FQLKSSLVSTAEGVLTTPEKDRGVVVVNLGYNFTGLIAYKNG 226 (419)
T ss_dssp HHHHHHHHHHTTSCSC--EEEEEHHHHHHHHHCCHHHHHHCEEEEEECSSSEEEEEEETT
T ss_pred HHHHHHHHHHHcCCcE--EEEEEHHHHHHHHhhccccccCCEEEEEECCCcEEEEEEECC
Confidence 6778888888888886 689999988876532211 1234445589888 56666544
No 67
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=75.76 E-value=8.9 Score=40.87 Aligned_cols=53 Identities=17% Similarity=0.229 Sum_probs=36.4
Q ss_pred cHHHHHHHHHHHcCCCeeEEEEEechHHHhhcccccC---CceEEEEEEcccc-ceeEE
Q 012386 206 DVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHN---KDAIAAVILGTGT-NAAYV 260 (465)
Q Consensus 206 dv~~~L~~al~~~gl~v~v~alvNDtvatlla~~y~~---~~~~iglIlGTG~-Na~yi 260 (465)
.-.+.+.++...-|+++ +.++|+..|++++..... ...++-+=+|-|| ..+.+
T Consensus 149 ~qr~a~~~Aa~~AGl~v--~~li~EP~AAAlaygl~~~~~~~~vlV~DlGGGT~Dvsi~ 205 (605)
T 4b9q_A 149 AQRQATKDAGRIAGLEV--KRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGAFDISII 205 (605)
T ss_dssp HHHHHHHHHHHHTTCEE--EEEEEHHHHHHHHHHTTSCCSSEEEEEEEECSSCEEEEEE
T ss_pred HHHHHHHHHHHHcCCce--EEEeCcHHHHHHHhhhhccCCCCEEEEEECCCCeEEEEEE
Confidence 34577778877778865 789999999998754432 3445555688888 44443
No 68
>2p3r_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics,; 2.00A {Escherichia coli} PDB: 3ezw_A 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y*
Probab=74.89 E-value=14 Score=38.44 Aligned_cols=48 Identities=21% Similarity=0.270 Sum_probs=34.0
Q ss_pred EEEEecceeccchhHHHHHHHHHHHHhccCCCccEEEEEeCChhHHHHHHHHHHhcc
Q 012386 402 VIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHSQ 458 (465)
Q Consensus 402 ~V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l~~a~Dgs~iGAAl~Aa~~~~ 458 (465)
.|.++||.. +.+.+.+.+.+.+ + ..|.+....+++.+|||++|+.+.-
T Consensus 404 ~i~~~GGga-~s~~~~Qi~ADv~----g----~pV~~~~~~e~~alGaA~lA~~a~G 451 (510)
T 2p3r_A 404 ALRVDGGAV-ANNFLMQFQSDIL----G----TRVERPEVREVTALGAAYLAGLAVG 451 (510)
T ss_dssp EEEEESGGG-GCHHHHHHHHHHH----T----SEEEEESCCCHHHHHHHHHHHHHHT
T ss_pred EEEEeCchh-cCHHHHHHHHHHh----C----CceEecCCCCcHHHHHHHHHHHHhC
Confidence 466677765 6888888766654 2 2455555678999999999988663
No 69
>3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO 11200H, transferase, PSI-2; 2.30A {Rhodospirillum rubrum}
Probab=72.63 E-value=22 Score=36.77 Aligned_cols=48 Identities=21% Similarity=0.165 Sum_probs=34.9
Q ss_pred EEEEecceeccchhHHHHHHHHHHHHhccCCCccEEEEEeCChhHHHHHHHHHHhcc
Q 012386 402 VIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHSQ 458 (465)
Q Consensus 402 ~V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l~~a~Dgs~iGAAl~Aa~~~~ 458 (465)
.|.++||.. +.+.+.+.+.+.+ + ..|......+++.+|||++|+.+.-
T Consensus 403 ~i~~~GGga-~s~~~~Qi~ADv~----g----~pV~~~~~~e~~alGaA~lA~~a~G 450 (508)
T 3ifr_A 403 RFFASDGGT-RSRVWMGIMADVL----Q----RPVQLLANPLGSAVGAAWVAAIGGG 450 (508)
T ss_dssp EEEEESGGG-GCHHHHHHHHHHH----T----SCEEEEECCSTHHHHHHHHHHHHTC
T ss_pred EEEEeCCcc-cCHHHHHHHHHHh----C----CeEEecCCCCchHHHHHHHHHHHhC
Confidence 466677765 6787877766654 2 3566666688999999999998764
No 70
>3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, struct genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A*
Probab=72.24 E-value=15 Score=37.89 Aligned_cols=48 Identities=21% Similarity=0.268 Sum_probs=34.4
Q ss_pred EEEEecceeccchhHHHHHHHHHHHHhccCCCccEEEEEeCChhHHHHHHHHHHhcc
Q 012386 402 VIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHSQ 458 (465)
Q Consensus 402 ~V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l~~a~Dgs~iGAAl~Aa~~~~ 458 (465)
.|.++||.. +.+.+.+.+.+.+ + ..|.+....+++.+|||++|+.+.-
T Consensus 407 ~i~~~GG~a-ks~~~~Qi~Adv~----g----~pV~~~~~~e~~alGaA~la~~a~G 454 (501)
T 3g25_A 407 SLRVDGGAV-KNNFIMQFQADIV----N----TSVERPEIQETTALGAAFLAGLAVG 454 (501)
T ss_dssp EEEEESGGG-GCHHHHHHHHHHH----T----SEEEEESCCCHHHHHHHHHHHHHTT
T ss_pred EEEEecchh-cCHHHHHHHHHHh----C----CceEecCCCcchHHHHHHHHHHHhC
Confidence 466677765 6888887776654 2 2455555688999999999998764
No 71
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=70.66 E-value=60 Score=33.70 Aligned_cols=131 Identities=13% Similarity=0.093 Sum_probs=69.6
Q ss_pred eEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCCcccCC------cchHHHHHHHHHHHHHHhhCCCCCCCCCCc
Q 012386 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGS------SHELFDYIAAALAKFVATEGEGFHVSPGRQ 169 (465)
Q Consensus 96 ~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~------~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~ 169 (465)
.+||||-..-..-+++++-++ .++...... .... .|+ ...-.+.+...|++.+++ ... .+.
T Consensus 7 ~iL~i~ts~~~~~~al~~~~~---~~~~~~~~~--~~~~--~gg~~p~~a~~~h~~~l~~~i~~~l~~--~~~----~~i 73 (540)
T 3en9_A 7 ICLGLEGTAEKTGVGIVTSDG---EVLFNKTIM--YKPP--KQGINPREAADHHAETFPKLIKEAFEV--VDK----NEI 73 (540)
T ss_dssp EEEEEECSSSEEEEEEEETTS---CEEEEEEEE--CCCC--CSSSSCCCHHHHHHHHHHHHHHHHHHH--SCG----GGC
T ss_pred eEEEEEcCccceEEEEEECCC---eEEEEEEEe--ecCC--CCCCChHHHHHHHHHHHHHHHHHHHHh--CCH----hHC
Confidence 589999998899999998643 255443222 2111 111 133445555555666655 221 335
Q ss_pred ceeeeeeecccccccCCceEEeccCCccccCCCCCCcHHHHHHHHHHHcCCCeeEEEEEechHHHhhcccccC-CceEEE
Q 012386 170 RELGFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHN-KDAIAA 248 (465)
Q Consensus 170 ~~lG~tfSfPv~q~~i~~g~Li~wtKgF~~~~~~g~dv~~~L~~al~~~gl~v~v~alvNDtvatlla~~y~~-~~~~ig 248 (465)
..+++|. +|=--+++ -+|....+-|-.++ ++|+ .=+|---|-+++..+.+ ...-++
T Consensus 74 d~ia~~~-gPG~~~~l----------------~vg~~~ak~la~~~---~~p~---~~v~h~~aH~~~~~~~~~~~~p~~ 130 (540)
T 3en9_A 74 DLIAFSQ-GPGLGPSL----------------RVTATVARTLSLTL---KKPI---IGVNHCIAHIEIGKLTTEAEDPLT 130 (540)
T ss_dssp CEEEEEE-ESSCHHHH----------------HHHHHHHHHHHHHH---TCCE---EEEEHHHHHHHHHHHHSSCSSCEE
T ss_pred cEEEEec-CCCchhhH----------------HHHHHHHHHHHHHh---CCCe---eEeccHHHHHHHHHHhcCCCCCcE
Confidence 5566543 22111000 12344556666666 8886 44666666665554421 112288
Q ss_pred EEEccccceeEEcc
Q 012386 249 VILGTGTNAAYVER 262 (465)
Q Consensus 249 lIlGTG~Na~yie~ 262 (465)
+.+.-|....+..+
T Consensus 131 l~vsGg~t~~~~~~ 144 (540)
T 3en9_A 131 LYVSGGNTQVIAYV 144 (540)
T ss_dssp EEECSSCEEEEEEE
T ss_pred EEEcCCCcEEEEEe
Confidence 88888876655444
No 72
>2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP}
Probab=69.71 E-value=21 Score=36.89 Aligned_cols=47 Identities=21% Similarity=0.307 Sum_probs=33.9
Q ss_pred EEEEecceeccchhHHHHHHHHHHHHhccCCCccEEEEEeCChhHHHHHHHHHHhc
Q 012386 402 VIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHS 457 (465)
Q Consensus 402 ~V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l~~a~Dgs~iGAAl~Aa~~~ 457 (465)
.|.++||.. +.+.+.+.+.+.+ + ..|.+....+++.+|||++|+.+.
T Consensus 406 ~i~~~GG~a-~s~~~~Qi~Adv~----g----~pV~~~~~~e~~alGaA~lA~~~~ 452 (504)
T 2d4w_A 406 ELRVDGGMV-ANELLMQFQADQL----G----VDVVRPKVAETTALGAAYAAGIAV 452 (504)
T ss_dssp EEEEESGGG-GCHHHHHHHHHHH----T----SCEEEESCSCHHHHHHHHHHHHHH
T ss_pred eEEEeCCcc-cCHHHHHHHHHHh----C----CeEEeCCCCcchHHHHHHHHHhhc
Confidence 466777776 5787887766654 2 256555557899999999998876
No 73
>3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleoti binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O
Probab=69.07 E-value=19 Score=37.34 Aligned_cols=48 Identities=19% Similarity=0.220 Sum_probs=33.6
Q ss_pred EEEEecceeccchhHHHHHHHHHHHHhccCCCccEEEEEeCChhHHHHHHHHHHhcc
Q 012386 402 VIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHSQ 458 (465)
Q Consensus 402 ~V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l~~a~Dgs~iGAAl~Aa~~~~ 458 (465)
.|.++||.. +.+.+.+.+.+.+ + ..|.+....+++.+|||++|+.+.-
T Consensus 406 ~i~~~GGga-~s~~~~Qi~ADv~----g----~pV~~~~~~e~~alGaA~lA~~a~G 453 (506)
T 3h3n_X 406 LLKVDGGAA-KNDLLMQFQADIL----D----IDVQRAANLETTALGAAYLAGLAVG 453 (506)
T ss_dssp EEEEESGGG-GCHHHHHHHHHHH----T----SEEEECSSSCHHHHHHHHHHHHHTT
T ss_pred EEEEecccc-cCHHHHHHHHHHh----C----CeEEecCCCcchhHHHHHHHHHHhC
Confidence 466677765 6788877776654 2 2454444578999999999988763
No 74
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426}
Probab=67.66 E-value=23 Score=36.70 Aligned_cols=52 Identities=19% Similarity=0.263 Sum_probs=33.8
Q ss_pred HHHHHHHHHHcCCCeeEEEEEechHHHhhccccc--CCceEEEEEEcccc-ceeEEc
Q 012386 208 VGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH--NKDAIAAVILGTGT-NAAYVE 261 (465)
Q Consensus 208 ~~~L~~al~~~gl~v~v~alvNDtvatlla~~y~--~~~~~iglIlGTG~-Na~yie 261 (465)
.+.+.++....|+++ +.++|+.+|++++.... .+...+-+=+|-|| ..+.++
T Consensus 125 r~a~~~a~~~AGl~~--~~li~Ep~AAAlay~~~~~~~~~vlV~D~GgGT~Dvsv~~ 179 (509)
T 2v7y_A 125 RQATKDAGRIAGLEV--ERIINEPTAAALAYGLDKEEDQTILVYDLGGGTFDVSILE 179 (509)
T ss_dssp HHHHHHHHHHTTCEE--EEEEEHHHHHHHHTTGGGSCSEEEEEEEECSSCEEEEEEE
T ss_pred HHHHHHHHHHcCCCe--EEEecCHHHHHHHHhhccCCCCEEEEEECCCCeEEEEEEE
Confidence 456667777678764 79999999998875543 23444445567776 344433
No 75
>3jvp_A Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, sugar kinase, crsytal structure, structural genomics, protein structure initiative; HET: 5RP; 2.31A {Bacillus halodurans} PDB: 3qdk_A*
Probab=66.96 E-value=18 Score=38.13 Aligned_cols=49 Identities=16% Similarity=0.249 Sum_probs=36.1
Q ss_pred EEEEecceeccchhHHHHHHHHHHHHhccCCCccEEEEEeCChhHHHHHHHHHHhcc
Q 012386 402 VIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHSQ 458 (465)
Q Consensus 402 ~V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l~~a~Dgs~iGAAl~Aa~~~~ 458 (465)
.|.+.||..++.+.+.+.+.+.+ + ..|.+....+++.+|||++|+.+.-
T Consensus 442 ~i~~~GGga~ks~~~~Qi~ADv~----g----~pV~~~~~~e~~alGaA~lA~~a~G 490 (572)
T 3jvp_A 442 ELYACGGLPQKNHLLMQIFADVT----N----REIKVAASKQTPALGAAMFASVAAG 490 (572)
T ss_dssp EEEEESSHHHHCHHHHHHHHHHH----T----SCEEEBCCSSHHHHHHHHHHHHHHC
T ss_pred EEEEEcCchhhCHHHHHHHHHHH----C----CeeEecCCCccHHHHHHHHHHHhcC
Confidence 57778887757888887777654 2 2565555588999999999987653
No 76
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=66.75 E-value=28 Score=38.18 Aligned_cols=49 Identities=24% Similarity=0.306 Sum_probs=34.1
Q ss_pred EEEEecceeccchhHHHHHHHHHHHHhccCCCccEEE---EEeCChhH-HHHHHHHHHh
Q 012386 402 VIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVI---EHSNDGSG-IGAALLAASH 456 (465)
Q Consensus 402 ~V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l---~~a~Dgs~-iGAAl~Aa~~ 456 (465)
.|++.|||+. +..+++.+.+.+++. + -.+.+ .+.+||++ +|+|++|+..
T Consensus 696 ~VvLsGGVa~-N~~Lr~~L~~~l~~~-g----~~v~~p~~~p~~DgGialGQA~~a~~~ 748 (761)
T 3vth_A 696 KVVLSGGSFQ-NRYLLRRLIEKLSLS-G----FEVYSNSKVPCNDGGISLGQAVIANKI 748 (761)
T ss_dssp EEEEESGGGG-SHHHHHHHHHHHHHT-T----CEEEECSSSCSSGGGHHHHHHHHHHHH
T ss_pred EEEEECcHHH-HHHHHHHHHHHHHhC-C----CEEEecCCCCCCchHHHHHHHHHHHHH
Confidence 6899999985 667888888877653 1 12322 34478877 9999988643
No 77
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Probab=66.64 E-value=20 Score=37.70 Aligned_cols=51 Identities=16% Similarity=0.219 Sum_probs=34.2
Q ss_pred HHHHHHHHHHcCCCeeEEEEEechHHHhhcccccC----CceEEEEEEcccc-ceeEE
Q 012386 208 VGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHN----KDAIAAVILGTGT-NAAYV 260 (465)
Q Consensus 208 ~~~L~~al~~~gl~v~v~alvNDtvatlla~~y~~----~~~~iglIlGTG~-Na~yi 260 (465)
.+.+.++...-|+++ +.++|+..|++++..... ....+-+=+|-|| ..+.+
T Consensus 155 r~a~~~A~~~AGl~~--~~li~EP~AAAlay~~~~~~~~~~~vlV~D~GgGT~Dvsv~ 210 (554)
T 1yuw_A 155 RQATKDAGTIAGLNV--LRIINEPTAAAIAYGLDKKVGAERNVLIFDLGGGTFDVSIL 210 (554)
T ss_dssp HHHHHHHHHTTTCEE--EEEEEHHHHHHHHTTCSTTCSSCEEEEEEEECSSCEEEEEE
T ss_pred HHHHHHHHHHcCCCe--EEEeCcHHHHHHHHHhhccCCCCcEEEEEEcCCCeEEEEEE
Confidence 566677777668764 799999999988754422 3455555677777 44444
No 78
>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703}
Probab=66.02 E-value=26 Score=36.39 Aligned_cols=47 Identities=28% Similarity=0.167 Sum_probs=34.2
Q ss_pred EEEEecceeccchhHHHHHHHHHHHHhccCCCccEEEEEeCChhHHHHHHHHHHhc
Q 012386 402 VIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHS 457 (465)
Q Consensus 402 ~V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l~~a~Dgs~iGAAl~Aa~~~ 457 (465)
.|.+.||.. +.+.+.+.+.+.+ + ..|.+....+++.+|||++|+.+.
T Consensus 427 ~i~~~GGga-ks~~~~Qi~ADvl----g----~pV~~~~~~e~~alGAA~lA~~a~ 473 (515)
T 3i8b_A 427 RILLIGGGA-KSEAIRTLAPSIL----G----MDVTRPATDEYVAIGAARQAAWVL 473 (515)
T ss_dssp EEEEESGGG-GCHHHHHHHHHHH----T----SCEEEECCCCHHHHHHHHHHHHHH
T ss_pred EEEEECchh-cCHHHHHHHHHHh----C----CceEecCCcccHHHHHHHHHHHHc
Confidence 466777765 6888887776654 2 356555568899999999998765
No 79
>4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.33A {Sinorhizobium meliloti}
Probab=65.30 E-value=23 Score=36.83 Aligned_cols=46 Identities=20% Similarity=0.242 Sum_probs=33.4
Q ss_pred EEEecceeccchhHHHHHHHHHHHHhccCCCccEEEEEeCChhHHHHHHHHHHhc
Q 012386 403 IALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHS 457 (465)
Q Consensus 403 V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l~~a~Dgs~iGAAl~Aa~~~ 457 (465)
|.++||.. +.+.+.+.+.+.+ + ..|.+....+++.+|||++|+.+.
T Consensus 429 i~~~GGga-ks~~~~Qi~ADvl----g----~pV~~~~~~e~~alGAA~lA~~a~ 474 (520)
T 4e1j_A 429 LRVDGGMV-ASDWTMQRLSDLL----D----APVDRPVILETTALGVAWLAGSRA 474 (520)
T ss_dssp EEEESGGG-GCHHHHHHHHHHH----T----SCEEEESCCCHHHHHHHHHHHHHH
T ss_pred EEEeCccc-cCHHHHHHHHHHh----C----CeEEecCCCccHHHHHHHHHHHHc
Confidence 55667765 6888888776654 2 356555568899999999998876
No 80
>2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=64.48 E-value=22 Score=36.64 Aligned_cols=46 Identities=24% Similarity=0.416 Sum_probs=33.1
Q ss_pred EEEecceeccchhHHHHHHHHHHHHhccCCCccEEEEEeCChhHHHHHHHHHHhc
Q 012386 403 IALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHS 457 (465)
Q Consensus 403 V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l~~a~Dgs~iGAAl~Aa~~~ 457 (465)
|.++||.. +.+.+.+.+.+.+ + ..|.+....+++.+|||++|+.+.
T Consensus 402 i~~~GG~a-~n~~~~q~~Adv~----g----~pV~~~~~~e~~alGaA~la~~a~ 447 (495)
T 2dpn_A 402 LKADGGMA-QNRLFLKIQADLL----G----VPVAVPEVTETTALGAALMAGVGA 447 (495)
T ss_dssp EEEESGGG-GCHHHHHHHHHHH----T----SCEEEESCSCHHHHHHHHHHHHHH
T ss_pred EEEecccc-cCHHHHHHHHHHh----C----CeeEecCCcccHHHHHHHHHHhhc
Confidence 66777765 6788887776654 2 246555557899999999998765
No 81
>2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A*
Probab=63.35 E-value=28 Score=35.87 Aligned_cols=47 Identities=19% Similarity=0.362 Sum_probs=33.9
Q ss_pred EEEecceeccchhHHHHHHHHHHHHhccCCCccEEEEEeCChhHHHHHHHHHHhcc
Q 012386 403 IALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHSQ 458 (465)
Q Consensus 403 V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l~~a~Dgs~iGAAl~Aa~~~~ 458 (465)
|.+.||.. +.+.+.+.+.+.+ + ..|.+....+++.+|||++|+.+.-
T Consensus 411 i~~~GG~a-~s~~~~Q~~Adv~----g----~pV~~~~~~e~~alGaA~la~~~~G 457 (503)
T 2w40_A 411 LRCDGGMT-KNKPFMQFNSDII----N----TKIEVSKYKEVTSLGAAVLAGLEVK 457 (503)
T ss_dssp EEEESGGG-GCHHHHHHHHHHH----T----SCEEEESCSCHHHHHHHHHHHHHTT
T ss_pred EEEeCccc-cCHHHHHHHHHHH----C----CeEEecCCCcchHHHHHHHHHHHhC
Confidence 56777766 6788887777654 2 2565555578999999999988763
No 82
>3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose, transferase, structural genomics, PSI-2, protein structure initiative; HET: ATP DXP XUL ADP; 2.00A {Lactobacillus acidophilus} PDB: 3gbt_A*
Probab=62.11 E-value=32 Score=35.54 Aligned_cols=48 Identities=15% Similarity=0.185 Sum_probs=34.3
Q ss_pred EEEEecceeccchhHHHHHHHHHHHHhccCCCccEEEEEeCChhHHHHHHHHHHhcc
Q 012386 402 VIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHSQ 458 (465)
Q Consensus 402 ~V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l~~a~Dgs~iGAAl~Aa~~~~ 458 (465)
.|.++||.. +.+.+.+.+.+.+ + ..|......+++.+|||++|+.+.-
T Consensus 396 ~i~~~GGga-~s~~~~Qi~ADv~----g----~pV~~~~~~e~~alGaA~lA~~a~G 443 (504)
T 3ll3_A 396 AINATGGFL-KSDFVRQLCANIF----N----VPIVTMKEQQSGTLAAMFLARQALG 443 (504)
T ss_dssp EEEEESGGG-CSHHHHHHHHHHH----T----SCEEEESCSCHHHHHHHHHHHHHTT
T ss_pred EEEEeCchh-cCHHHHHHHHHhh----C----CeEEecCCCCchhHHHHHHHHHHcC
Confidence 466677765 6888877776654 2 3565555688999999999988763
No 83
>3nuw_A 2-OXO-3-deoxygalactonate kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 2.09A {Klebsiella pneumoniae} PDB: 3r1x_A*
Probab=61.47 E-value=9.9 Score=36.85 Aligned_cols=27 Identities=30% Similarity=0.501 Sum_probs=21.9
Q ss_pred eeEEEEEeCCceEEEEEEEecCCcceeEEEE
Q 012386 95 GLFYALDLGGTNFRVLRVQLGGREGRVVKQE 125 (465)
Q Consensus 95 G~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~ 125 (465)
..+|++|=|-||||+-+++ +| +++.+.
T Consensus 6 ~~~IavDWGTs~lRa~l~~-~g---~vl~~~ 32 (295)
T 3nuw_A 6 ARYIAIDWGSTNLRAWLYQ-GE---ECLESR 32 (295)
T ss_dssp CEEEEEEECSSCEEEEEEE-TT---EEEEEE
T ss_pred ccEEEEEecchheeeeeec-CC---ceehhh
Confidence 3699999999999999998 55 476544
No 84
>3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc, keops complex, ATPase, metal ION binding; 3.02A {Thermoplasma acidophilum}
Probab=61.36 E-value=1.2e+02 Score=29.37 Aligned_cols=130 Identities=15% Similarity=0.182 Sum_probs=68.3
Q ss_pred eEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCCcccCC------cchHHHHHHHHHHHHHHhhCCCCCCCCCCc
Q 012386 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGS------SHELFDYIAAALAKFVATEGEGFHVSPGRQ 169 (465)
Q Consensus 96 ~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~------~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~ 169 (465)
.+||||-.....-+++++- + +++...... .... .++ ...--+.+...|++.+++.+... ++.
T Consensus 7 ~iLgIdts~~~~svAl~~~-~---~i~~~~~~~--~~~~--~gGv~p~~a~~~H~~~l~~~i~~~L~~ag~~~----~di 74 (334)
T 3eno_A 7 IVLGLEGTAHTISCGIIDE-S---RILAMESSM--YRPK--TGGIRPLDAAVHHSEVIDTVISRALEKAKISI----HDI 74 (334)
T ss_dssp EEEEEECSSSEEEEEEEES-S---CCCEEEEEE--CCCS--SCSCCHHHHHHHHHHHHHHHHHHHHHHHTCCG----GGC
T ss_pred eEEEEECCCcCeEEEEEEC-C---EEEEEEEEe--eccc--cCCcCcchHHHHHHHHHHHHHHHHHHHcCCCH----HHC
Confidence 5899999888999999973 3 244433222 2111 121 12334566677777777776543 456
Q ss_pred ceeeeeeecccccccCCceEEeccCCccccCCCCCCcHHHHHHHHHHHcCCCeeEEEEEechHHHhhccccc-CCceEEE
Q 012386 170 RELGFTFSFPVRQTSIASGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRYH-NKDAIAA 248 (465)
Q Consensus 170 ~~lG~tfSfPv~q~~i~~g~Li~wtKgF~~~~~~g~dv~~~L~~al~~~gl~v~v~alvNDtvatlla~~y~-~~~~~ig 248 (465)
..+++|. +|=.-++ +. +|....+-|..++ ++|+ .-+|---+-+++..|. +.+..+.
T Consensus 75 d~Iav~~-gPG~~t~------------lr----vg~~~ak~La~~~---~~Pl---~~v~hl~aHa~sa~~~s~~~~pl~ 131 (334)
T 3eno_A 75 DLIGFSM-GPGLAPS------------LR----VTATAARTISVLT---GKPI---IGVNHPLGHIEIGRRVTGAIDPVM 131 (334)
T ss_dssp CEEEEEC-SSSCHHH------------HH----HHHHHHHHHHHHH---TCCC---EEECHHHHHHHHHHHHHTCSSCEE
T ss_pred CEEEEEc-CCCCcch------------HH----HHHHHHHHHhhcc---CCCe---EEeccHHHHHHHHHhcCCCCCCEE
Confidence 6677664 3321111 11 1344555666666 7886 3455443433343332 1122267
Q ss_pred EEEccccceeEE
Q 012386 249 VILGTGTNAAYV 260 (465)
Q Consensus 249 lIlGTG~Na~yi 260 (465)
+++.-|...-|.
T Consensus 132 L~vsGg~t~l~~ 143 (334)
T 3eno_A 132 LYVSGGNTQVIA 143 (334)
T ss_dssp EEESSSCEEEEE
T ss_pred EEEECCCcEEEE
Confidence 777666654443
No 85
>1hjr_A Holliday junction resolvase (RUVC); site-specific recombinase; 2.50A {Escherichia coli} SCOP: c.55.3.6
Probab=60.19 E-value=22 Score=31.10 Aligned_cols=58 Identities=10% Similarity=0.061 Sum_probs=34.2
Q ss_pred eEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCCcccCCcchHHHHHHHHHHHHHHhhC
Q 012386 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEG 159 (465)
Q Consensus 96 ~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~ 159 (465)
.+||||-|=|+.=.++++.+|+....+. +-..+++ . .+..+=+..|.+.+.++++++.
T Consensus 2 ~ILGIDPGl~~tG~gvi~~~g~~~~~v~--~G~i~t~-~---~~~~~Rl~~i~~~l~~~i~~~~ 59 (158)
T 1hjr_A 2 IILGIDPGSRVTGYGVIRQVGRQLSYLG--SGCIRTK-V---DDLPSRLKLIYAGVTEIITQFQ 59 (158)
T ss_dssp EEEEEECCSSEEEEEEEEEETTEEEEEE--EEEEECC-C---SCHHHHHHHHHHHHHHHHHHHC
T ss_pred EEEEEccCCCCeeEEEEEecCCeEEEEE--eeEEECC-C---CCHHHHHHHHHHHHHHHHHHcC
Confidence 3799999999999999998775333332 2234444 2 1222223445555555665554
No 86
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}
Probab=59.72 E-value=31 Score=36.61 Aligned_cols=52 Identities=21% Similarity=0.280 Sum_probs=34.4
Q ss_pred HHHHHHHHHHcCCCeeEEEEEechHHHhhcccccC---CceEEEEEEcccc-ceeEEc
Q 012386 208 VGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHN---KDAIAAVILGTGT-NAAYVE 261 (465)
Q Consensus 208 ~~~L~~al~~~gl~v~v~alvNDtvatlla~~y~~---~~~~iglIlGTG~-Na~yie 261 (465)
.+.+.++...-|+++ +.++|+.+|++++..... +...+-+=+|-|| ..+.+.
T Consensus 151 r~a~~~A~~~AGl~v--~~li~EP~AAAlay~l~~~~~~~~vlV~DlGGGT~Dvsi~~ 206 (605)
T 2kho_A 151 RQATKDAGRIAGLEV--KRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIE 206 (605)
T ss_dssp HHHHHHHHHTTTCEE--EEEEEHHHHHHHHTTTTSSSSEEEEEEEEECSSCEEEEEEE
T ss_pred HHHHHHHHHHcCCce--EEEecCHHHHHHHhhhcccCCCCEEEEEECCCCeEEEEEEE
Confidence 466677776668764 799999999998755432 3344445577777 444443
No 87
>3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii}
Probab=58.73 E-value=35 Score=33.03 Aligned_cols=62 Identities=21% Similarity=0.269 Sum_probs=40.9
Q ss_pred eEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCCccc-CC-cchHHHHHHHHHHHHHHh
Q 012386 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMT-GS-SHELFDYIAAALAKFVAT 157 (465)
Q Consensus 96 ~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~-~~-~~~lfd~Ia~~I~~fl~~ 157 (465)
.|-+||+|-.++|..+++..+...+++........+-+.+.. +. .++-.+...++++.|.+.
T Consensus 5 ~~A~IDiGSNsirL~I~~~~~~~~~~i~~~k~~vrLg~g~~~~g~ls~eai~r~~~~L~~f~~~ 68 (315)
T 3mdq_A 5 RIGVIDMGTNTFHLLITDIVNDRPHTLVNEKSAVGLGKGGITKGFITEEAMDRALDTLKKFRVI 68 (315)
T ss_dssp EEEEEEECSSEEEEEEEEEETTEEEEEEEEEEECCSSTTTGGGTCCCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEecCCcEEEEEEEEcCCceEEeeeceeeeeccccccccCCcCHHHHHHHHHHHHHHHHH
Confidence 578999999999999999865433445444333344444321 11 456778888888888653
No 88
>2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis}
Probab=57.87 E-value=30 Score=35.61 Aligned_cols=47 Identities=19% Similarity=0.265 Sum_probs=33.2
Q ss_pred EEEecceeccchhHHHHHHHHHHHHhccCCCccEEEEEeCChhHHHHHHHHHHhcc
Q 012386 403 IALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHSQ 458 (465)
Q Consensus 403 V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l~~a~Dgs~iGAAl~Aa~~~~ 458 (465)
|.++||.. +.+.+.+.+.+.+ + ..|.+....+++.+|||++|+.+.-
T Consensus 397 i~~~GG~a-~s~~~~Qi~Adv~----g----~pV~~~~~~e~~alGaA~lA~~~~g 443 (497)
T 2zf5_O 397 LRVDGGAT-ANDFLMQFQADIL----N----RKVIRPVVKETTALGAAYLAGLAVD 443 (497)
T ss_dssp EEEESGGG-GCHHHHHHHHHHH----T----SCEEEESCSCHHHHHHHHHHHHHTT
T ss_pred EEEeCccc-cCHHHHHHHHhhc----C----CeEEEcCCCcchHHHHHHHHHHHhC
Confidence 55677765 5777877766654 2 2465555577999999999988763
No 89
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Probab=57.59 E-value=22 Score=38.37 Aligned_cols=126 Identities=20% Similarity=0.217 Sum_probs=0.0
Q ss_pred EEEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCCc-----------------------------------------
Q 012386 97 FYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHL----------------------------------------- 135 (465)
Q Consensus 97 ~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~~----------------------------------------- 135 (465)
++|||||-||..|+.++-++- .++........+|.-+
T Consensus 4 ~iGIDlGTtns~va~~~~g~~--~ii~n~~g~r~tPS~Vaf~~~~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~d~~v 81 (675)
T 3d2f_A 4 PFGLDLGNNNSVLAVARNRGI--DIVVNEVSNRSTPSVVGFGPKNRYLGETGKNKQTSNIKNTVANLKRIIGLDYHHPDF 81 (675)
T ss_dssp CEEEECCSSEEEEEEEETTEE--EEECCTTSCSSEECCEEECSSSEEETHHHHHHHTTCGGGEECCHHHHTTCBTTCTTH
T ss_pred EEEEEcCCCcEEEEEEECCee--EEEECCCCCcccceEEEECCCcEEecHHHHHhhhhChHhHHHHHHHHhCCCCCcHHH
Q ss_pred -----------------------------ccCCcchHHHHHHHHHHHHHHhhCCCCCCCCCCcceeeeeeecccccccCC
Q 012386 136 -----------------------------MTGSSHELFDYIAAALAKFVATEGEGFHVSPGRQRELGFTFSFPVRQTSIA 186 (465)
Q Consensus 136 -----------------------------~~~~~~~lfd~Ia~~I~~fl~~~~~~~~~~~~~~~~lG~tfSfPv~q~~i~ 186 (465)
..-+++++...+-..+.+.....-. ...-.+.++-|.
T Consensus 82 ~~~~~~~p~~v~~~~~g~~~~~~~~~g~~~~~speei~a~~L~~lk~~ae~~lg--------~~v~~~VITVPa------ 147 (675)
T 3d2f_A 82 EQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQLAAMFIDKVKDTVKQDTK--------ANITDVCIAVPP------ 147 (675)
T ss_dssp HHHHTTCCSEEEECTTSBEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHC--------SCCCEEEEEECT------
T ss_pred HHHHhhCCeeEEEcCCCceEEEEEeCCCCceEcHHHHHHHHHHHHHHHHHHHhC--------CCcceEEEEECC------
Q ss_pred ceEEeccCCccccCCCCCCcHHHHHHHHHHHcCCCeeEEEEEechHHHhhcccc---------cCCceEEEEEEcccc
Q 012386 187 SGDLIKWTKGFSIEDTVGEDVVGELTKAMERIGLDMRVAALVNDTIGTLAGGRY---------HNKDAIAAVILGTGT 255 (465)
Q Consensus 187 ~g~Li~wtKgF~~~~~~g~dv~~~L~~al~~~gl~v~v~alvNDtvatlla~~y---------~~~~~~iglIlGTG~ 255 (465)
.|+ ..=.+.+.++...-|+++ +.|+|+.+|++++... ..+..++-+=+|-||
T Consensus 148 -----~f~----------~~qR~a~~~Aa~~AGl~~--~~li~EP~AAAlaygl~~~~~~~~~~~~~~vlV~DlGGGT 208 (675)
T 3d2f_A 148 -----WYT----------EEQRYNIADAARIAGLNP--VRIVNDVTAAGVSYGIFKTDLPEGEEKPRIVAFVDIGHSS 208 (675)
T ss_dssp -----TCC----------HHHHHHHHHHHHHTTCEE--EEEEEHHHHHHHHHHHHCSCCCCSSSCCEEEEEEEECSSC
T ss_pred -----CCC----------HHHHHHHHHHHHHcCCce--EEEEcchHHHHHHHhhhccccccccCCCcEEEEEEcCCCc
No 90
>3t69_A Putative 2-dehydro-3-deoxygalactonokinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.55A {Sinorhizobium meliloti}
Probab=55.94 E-value=8.8 Score=37.83 Aligned_cols=53 Identities=21% Similarity=0.375 Sum_probs=31.9
Q ss_pred eeEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCCcccCCcchHHHHHHHHHHHH
Q 012386 95 GLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKF 154 (465)
Q Consensus 95 G~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~f 154 (465)
..+|+||=|-||||+-+++.+| +++.+. .-+..++.....++-+.+.+.+.++
T Consensus 7 ~~~IavDWGTSnlRa~l~~~~g---~vl~~~----~~~~Gv~~~~~~~f~~~l~~l~~~w 59 (330)
T 3t69_A 7 GYYAAVDWGTSSFRLWIIGEDG---AVLAER----RSAEGMTTAAKTGFHTILDGHLAAV 59 (330)
T ss_dssp -CEEEEEECSSCEEEEEECTTS---CEEEEE----EESCCHHHHHHHCHHHHHHHHHHHT
T ss_pred CCEEEEEecchheehheecCCC---Cchhhh----cCCcchhhcCcccHHHHHHHHHHHh
Confidence 3699999999999999987766 366543 3344443222233334444444444
No 91
>4bc3_A Xylulose kinase; transferase, glucuronate xylulokinase pathway; HET: MSE EDO; 1.68A {Homo sapiens} PDB: 4bc2_A* 4bc4_A* 4bc5_A*
Probab=54.66 E-value=34 Score=35.63 Aligned_cols=46 Identities=17% Similarity=0.233 Sum_probs=32.1
Q ss_pred EEEecceeccchhHHHHHHHHHHHHhccCCCccEEEEEeCChhHHHHHHHHHHhc
Q 012386 403 IALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHS 457 (465)
Q Consensus 403 V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l~~a~Dgs~iGAAl~Aa~~~ 457 (465)
|.++||.. +.+.+.+.+.+.+ + ..|......+++.+|||++|+.+.
T Consensus 438 i~~~GGga-~s~~~~Qi~ADv~----g----~pV~~~~~~e~~alGaA~lA~~a~ 483 (538)
T 4bc3_A 438 ILATGGAS-HNREILQVLADVF----D----APVYVIDTANSACVGSAYRAFHGL 483 (538)
T ss_dssp EEEEEGGG-GCHHHHHHHHHHH----T----SCEEECCCTTHHHHHHHHHHHHHH
T ss_pred EEEEcchh-cCHHHHHHHHHHh----C----CceEecCCCCchHHHHHHHHHHHh
Confidence 44555554 6888887776654 2 245554457899999999998765
No 92
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=54.56 E-value=63 Score=27.40 Aligned_cols=22 Identities=27% Similarity=0.252 Sum_probs=18.9
Q ss_pred eeEEEEEeCCceEEEEEEEecC
Q 012386 95 GLFYALDLGGTNFRVLRVQLGG 116 (465)
Q Consensus 95 G~~LaiDlGGTNlRv~~V~l~g 116 (465)
|.+||||+|-..+=|++-+..+
T Consensus 3 ~~iLglD~G~kriGvAvsd~~~ 24 (138)
T 1nu0_A 3 GTLMAFDFGTKSIGVAVGQRIT 24 (138)
T ss_dssp CEEEEEECCSSEEEEEEEETTT
T ss_pred CeEEEEEeCCCEEEEEEEcCCC
Confidence 4689999999999999888755
No 93
>3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A*
Probab=54.07 E-value=47 Score=34.71 Aligned_cols=48 Identities=13% Similarity=0.241 Sum_probs=34.5
Q ss_pred EEEEecceeccchhHHHHHHHHHHHHhccCCCccEEEEEeCChhHHHHHHHHHHhcc
Q 012386 402 VIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHSQ 458 (465)
Q Consensus 402 ~V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l~~a~Dgs~iGAAl~Aa~~~~ 458 (465)
.|.++||.. +.+.+.+.+.+.+ + ..|.+....+++.+|||++|+++.-
T Consensus 445 ~i~~~GG~a-ks~~~~Qi~ADv~----g----~pV~~~~~~e~~alGAA~lA~~a~G 492 (554)
T 3l0q_A 445 TMMASGGGT-KNPIFVQEHANAT----G----CAMLLPEESEAMLLGSAMMGTVAAG 492 (554)
T ss_dssp EEEEESGGG-GCHHHHHHHHHHH----C----CEEEEESCSCHHHHHHHHHHHHHTT
T ss_pred EEEEeCccc-cCHHHHHHHHHhh----C----CeEEecCCCcchHHHHHHHHHHHcC
Confidence 466777765 6888887766654 2 3565555688999999999998763
No 94
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=53.82 E-value=18 Score=38.98 Aligned_cols=46 Identities=20% Similarity=0.367 Sum_probs=31.7
Q ss_pred EEEEecceeccchhHHHHHHHHHHHHhccCCCccEEE---EEeCChhH-HHHHHHHHH
Q 012386 402 VIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVI---EHSNDGSG-IGAALLAAS 455 (465)
Q Consensus 402 ~V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l---~~a~Dgs~-iGAAl~Aa~ 455 (465)
.|++.|||+. +..+++.+.+.++ + -.+.+ .+.+|+++ +|.|++|+.
T Consensus 602 ~VvLsGGV~~-N~~Lre~L~~~l~---g----~~v~~p~~~p~~DnGiaLGQA~~a~~ 651 (657)
T 3ttc_A 602 TLVFSGGVIH-NRLLRARLAHYLA---D----FTLLFPQSLPAGDGGLSLGQGVIAAA 651 (657)
T ss_dssp EEEEESGGGG-CHHHHHHHHHHTT---T----SEEECCCSSCSSGGGHHHHHHHHHHH
T ss_pred EEEEECcHHH-HHHHHHHHHHHhC---C----CEEEecCCCCCCcHHHHHHHHHHHHH
Confidence 6999999985 5667777776553 1 12222 45588887 999998864
No 95
>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A
Probab=53.42 E-value=40 Score=34.49 Aligned_cols=46 Identities=22% Similarity=0.270 Sum_probs=32.3
Q ss_pred EEEecceeccchhHHHHHHHHHHHHhccCCCccEEEEEeCCh-hHHHHHHHHHHhc
Q 012386 403 IALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDG-SGIGAALLAASHS 457 (465)
Q Consensus 403 V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l~~a~Dg-s~iGAAl~Aa~~~ 457 (465)
|.++||.. +.+.+.+.+.+.+ + ..|......+. +.+|||++|+.+.
T Consensus 390 i~~~GG~a-~s~~~~Qi~Adv~----g----~pV~~~~~~e~~~alGAA~lA~~~~ 436 (484)
T 2itm_A 390 VTLIGGGA-RSEYWRQMLADIS----G----QQLDYRTGGDVGPALGAARLAQIAA 436 (484)
T ss_dssp EEEESGGG-CCHHHHHHHHHHH----C----CCEEEESCTTSCHHHHHHHHHHHHH
T ss_pred EEEEeccc-cCHHHHHHHHHHh----C----CeEEeCCCCCcccHHHHHHHHHHHc
Confidence 55677765 6777877776654 2 35655555664 8999999998765
No 96
>3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain 12444, SGX, transferase; 2.50A {Novosphingobium aromaticivorans}
Probab=53.23 E-value=18 Score=37.29 Aligned_cols=62 Identities=18% Similarity=0.173 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhCCCCcCCCCCceEEEEEecceeccchhHHHHHHHH-HHHHhccCCCccEEEEEeCChhHHHHHHHHHH
Q 012386 377 SAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQST-VKELLGEEVSETVVIEHSNDGSGIGAALLAAS 455 (465)
Q Consensus 377 ~aagiaaii~~~~~~~~~~~~~~~~~V~idGsv~~~~~~f~~~l~~~-l~~~~~~~~~~~v~l~~a~Dgs~iGAAl~Aa~ 455 (465)
+|-.+.-++..+... + .|.++||.. +.+.+.+.+-+. + + ..|.+....+++.+|||++|+.
T Consensus 374 ia~~~r~~l~~~~~~-------~--~i~~~GG~a-~s~~w~Qi~ADv~~----g----~pV~~~~~~e~~alGAA~lA~~ 435 (482)
T 3h6e_A 374 AALVADTALDLIGST-------G--RILVEGRFA-EADVFVRALASLRP----D----CAVYTANAHNDVSFGALRLIDP 435 (482)
T ss_dssp HHHHHHHHHHHTTCC-------S--EEEEESGGG-GCHHHHHHHHHHST----T----SEEEEESSCCCTTGGGHHHHCT
T ss_pred HHHHHHHHHHHhcCC-------C--eEEEeCCcc-cCHHHHHHHhhhcC----C----CeEEEcCCCchHHHHHHHHhCc
Confidence 555666666776542 2 466777765 688888777664 4 2 3565555688999999999987
Q ss_pred h
Q 012386 456 H 456 (465)
Q Consensus 456 ~ 456 (465)
+
T Consensus 436 a 436 (482)
T 3h6e_A 436 G 436 (482)
T ss_dssp T
T ss_pred c
Confidence 7
No 97
>3hi0_A Putative exopolyphosphatase; 17739545, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 2.30A {Agrobacterium tumefaciens str}
Probab=52.97 E-value=30 Score=35.98 Aligned_cols=76 Identities=18% Similarity=0.098 Sum_probs=46.0
Q ss_pred eeccccccCCCCCcceeEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCCccc-CC-cchHHHHHHHHHHHHHHh
Q 012386 80 MLISYVDNLPTGDEKGLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMT-GS-SHELFDYIAAALAKFVAT 157 (465)
Q Consensus 80 Mlpt~v~~lP~G~E~G~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~-~~-~~~lfd~Ia~~I~~fl~~ 157 (465)
|=|.+.. |.-.....|-+||+|-.++|..+++..++...++........+-+.+.. +. .++-.+...++++.|.+.
T Consensus 2 ~~~~~~~--~~~~~~~~~AaIDiGSNS~rL~I~~~~~~~~~~~~~~k~~vrLg~gl~~~g~Ls~eai~r~~~~L~~F~~~ 79 (508)
T 3hi0_A 2 MTRSEAQ--GRLTGLAPVSVIDIGSNSVRLVVYEGLSRAPAVLFNEKVLCGLGKGLALTGRMHEEGVTRALMALRRFHVL 79 (508)
T ss_dssp --CCCCS--SSCTTCCCEEEEEECSSEEEEEEESCSSSSCCEEEEEEEECCTTTTHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred CCccccc--cccccCCeEEEEEECCccEEEEEEEEcCCCceEEEEEeEEeecccCccccCCcCHHHHHHHHHHHHHHHHH
Confidence 4455533 3333344789999999999999998865433444433223344444321 11 456778888899888653
No 98
>3r9p_A ACKA; ssgcid, seattle structural genomics center for infectious DI acetate kinase, transferase; HET: PGE; 1.90A {Mycobacterium avium subsp} PDB: 3p4i_A 4dq8_A
Probab=52.62 E-value=6.4 Score=39.68 Aligned_cols=26 Identities=15% Similarity=0.188 Sum_probs=21.8
Q ss_pred ceEEEEEEccccceeEEccCCCCccc
Q 012386 244 DAIAAVILGTGTNAAYVERAHAIPKW 269 (465)
Q Consensus 244 ~~~iglIlGTG~Na~yie~~~~i~k~ 269 (465)
-..|-+=||.|...|-+.+++.+..-
T Consensus 195 ~~lIv~HLGnGaSv~Ai~~GksvDts 220 (391)
T 3r9p_A 195 LKQIVLHLGNGCSASAIAGTRPLDTS 220 (391)
T ss_dssp CEEEEEEESSSEEEEEEETTEEEEES
T ss_pred cCEEEEEeCCCcEeEEEECCEEEeeC
Confidence 37889999999999999998877443
No 99
>1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A*
Probab=52.41 E-value=35 Score=33.04 Aligned_cols=62 Identities=11% Similarity=0.178 Sum_probs=38.5
Q ss_pred eEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCCccc-CC-cchHHHHHHHHHHHHHHh
Q 012386 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMT-GS-SHELFDYIAAALAKFVAT 157 (465)
Q Consensus 96 ~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~-~~-~~~lfd~Ia~~I~~fl~~ 157 (465)
.|-+||+|-+++|+.+++..+....++........+-+.+.. +. .++-.+...+++..|.+.
T Consensus 13 ~~a~IDiGSns~rl~I~~~~~~~~~~i~~~k~~vrLg~g~~~~g~ls~eai~r~~~~L~~f~~~ 76 (315)
T 1t6c_A 13 RVASIDIGSYSVRLTIAQIKDGKLSIILERGRITSLGTKVKETGRLQEDRIEETIQVLKEYKKL 76 (315)
T ss_dssp EEEEEEECSSEEEEEEEEEETTEEEEEEEEEEECCTTTTHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEECcCcEEEEEEEEcCCcEEEEeeeeEEeecCCCccccCCcCHHHHHHHHHHHHHHHHH
Confidence 588999999999999999865433334333222333333211 11 345667777888888653
No 100
>2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer, hexokinas actin superfamily, L-rhamnulose kinase, rhamnose metabolism kinase; HET: LRH ADP; 1.55A {Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A*
Probab=51.23 E-value=60 Score=33.12 Aligned_cols=74 Identities=16% Similarity=0.120 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEecceeccchhHHHHHHHHHHHHhccCCCccEEEEEeCChh
Q 012386 366 CDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGS 445 (465)
Q Consensus 366 a~~V~~RaA~l~aagiaaii~~~~~~~~~~~~~~~~~V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l~~a~Dgs 445 (465)
++++++=-|.-+...+-.+-...+.. .+ .|.++||.. +.+.+.+.+.+.+ + ..|... ..+++
T Consensus 368 ~RAvlEgia~~~r~~~~~l~~~~g~~------~~--~i~~~GGga-ks~~~~Qi~ADvl----g----~pV~~~-~~e~~ 429 (489)
T 2uyt_A 368 ARCIFDSLALLYADVLHELAQLRGED------FS--QLHIVGGGC-QNTLLNQLCADAC----G----IRVIAG-PVEAS 429 (489)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCC------CS--EEEEESGGG-GCHHHHHHHHHHH----T----SEEEEC-CTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCC------CC--EEEEeCChh-hhHHHHHHHHHHH----C----CeeecC-CccHh
Confidence 44555544444444444443323321 13 356677776 6787887766654 2 245432 37899
Q ss_pred HHHHHHHHHHhc
Q 012386 446 GIGAALLAASHS 457 (465)
Q Consensus 446 ~iGAAl~Aa~~~ 457 (465)
.+|||++|+.+.
T Consensus 430 alGaa~~A~~a~ 441 (489)
T 2uyt_A 430 TLGNIGIQLMTL 441 (489)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHc
Confidence 999988776654
No 101
>4ep4_A Crossover junction endodeoxyribonuclease RUVC; resolvase, hydrolase; 1.28A {Thermus thermophilus} PDB: 4ep5_A
Probab=48.12 E-value=1.1e+02 Score=26.83 Aligned_cols=59 Identities=20% Similarity=0.240 Sum_probs=35.2
Q ss_pred eEEEEEeCCceEEEEEEEecCC---cceeEEEEeeeeecCCCcccCCcchHHHHHHHHHHHHHHhhC
Q 012386 96 LFYALDLGGTNFRVLRVQLGGR---EGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALAKFVATEG 159 (465)
Q Consensus 96 ~~LaiDlGGTNlRv~~V~l~g~---~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~~fl~~~~ 159 (465)
.+||||-|=++.=.++|+..|+ ....+. +-....+.+. +..+=...|.+.+.++++++.
T Consensus 2 rILGIDPGl~~tG~gvi~~~g~~~~~~~~v~--~G~I~t~~~~---~~~~RL~~I~~~l~~~i~~~~ 63 (166)
T 4ep4_A 2 VVAGIDPGITHLGLGVVAVEGKGALKARLLH--GEVVKTSPQE---PAKERVGRIHARVLEVLHRFR 63 (166)
T ss_dssp EEEEEECCSSEEEEEEEEECSSSSSCEEEEE--EEEEECCTTS---CHHHHHHHHHHHHHHHHHHHC
T ss_pred EEEEEccccCceEEEEEEecCCccceEEEEE--eCeEECCCCC---CHHHHHHHHHHHHHHHHHHhC
Confidence 4799999999999999999775 323332 2234444431 222223445555556665554
No 102
>2i7n_A Pantothenate kinase 1; PANK, transferase; HET: ACO; 1.90A {Homo sapiens} SCOP: c.55.1.14 c.55.1.14 PDB: 3smp_A* 3sms_A* 2i7p_A* 3mk6_A*
Probab=47.65 E-value=62 Score=32.11 Aligned_cols=79 Identities=9% Similarity=0.019 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEecceeccchhHHHHHHHHHHHHhccCCCccEE-
Q 012386 359 RKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVV- 437 (465)
Q Consensus 359 ~~~~~~ia~~V~~RaA~l~aagiaaii~~~~~~~~~~~~~~~~~V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~- 437 (465)
.++.+.+..+|.+|-+.++.. . .++.+. + .|.+.||....+|.+.+.+.+++.-+-.. ..++.
T Consensus 279 eDIa~gll~sVa~~I~~lA~l--~--A~~~~i--------~--~IvftGgfla~n~~~~~~L~~~l~~ws~g--~~~~~~ 342 (360)
T 2i7n_A 279 EDLARATLVTITNNIGSIARM--C--ALNENI--------D--RVVFVGNFLRINMVSMKLLAYAMDFWSKG--QLKALF 342 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--H--HHHHTC--------C--CEEEESGGGCSSSHHHHHHHHHHHHHTTT--SCCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHH--H--HHHcCC--------C--eEEEeCcccccCHHHHHHHHHHHhhhhcC--CeeEEE
Confidence 345667777788876655321 1 133343 2 47899997788999999999988654221 12232
Q ss_pred EEEeCChhHHHHHHHH
Q 012386 438 IEHSNDGSGIGAALLA 453 (465)
Q Consensus 438 l~~a~Dgs~iGAAl~A 453 (465)
+....-.+-+|||+.+
T Consensus 343 ~~~~~y~GAlGAaL~~ 358 (360)
T 2i7n_A 343 LEHEGYFGAVGALLEL 358 (360)
T ss_dssp ETTTTCHHHHHHHHHH
T ss_pred cCCccHHHHHHHHHHh
Confidence 2334556677777764
No 103
>2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14
Probab=43.45 E-value=15 Score=35.48 Aligned_cols=72 Identities=13% Similarity=0.144 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEecceeccchhHHHHHHHHHHHHhccCCCccEEEE
Q 012386 360 KLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIE 439 (465)
Q Consensus 360 ~~~~~ia~~V~~RaA~l~aagiaaii~~~~~~~~~~~~~~~~~V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l~ 439 (465)
++.+.++.+|.+|-+.++.. ..+..+. + .|.+.||...++|.+++.+.++++.+ ..++.
T Consensus 211 DIaasl~~sV~~~I~~la~~----~a~~~~i--------~--~Vvf~Gg~l~~n~~l~~~l~~~~~~~-------~~~~~ 269 (287)
T 2ews_A 211 NKLAAVIGVVGEVVTTMAIT----VAREFKT--------E--NIVYIGSSFHNNALLRKVVEDYTVLR-------GCKPY 269 (287)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHTTC--------C--EEEEESGGGTTCHHHHHHHHHHHHHT-------TCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHhCCC--------C--eEEEeCCchhcCHHHHHHHHHHHhhC-------CceEE
Confidence 45567777787775544321 1233333 3 48899997778999999998876442 23444
Q ss_pred EeCChhH---HHHHHH
Q 012386 440 HSNDGSG---IGAALL 452 (465)
Q Consensus 440 ~a~Dgs~---iGAAl~ 452 (465)
.-+++.. +|||+.
T Consensus 270 ~p~~~~~~gAlGAaL~ 285 (287)
T 2ews_A 270 YVENGAFSGAIGALYL 285 (287)
T ss_dssp ECTTGGGHHHHHHHHT
T ss_pred ECCCccHHHHHHHHHh
Confidence 4455554 555543
No 104
>3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum, manolate, transferase, structural genomi 2; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A*
Probab=41.34 E-value=69 Score=33.06 Aligned_cols=41 Identities=22% Similarity=0.089 Sum_probs=29.5
Q ss_pred CCC--eeEEEEEechHHHhhcccccCCceEEEEEEccccceeEE
Q 012386 219 GLD--MRVAALVNDTIGTLAGGRYHNKDAIAAVILGTGTNAAYV 260 (465)
Q Consensus 219 gl~--v~v~alvNDtvatlla~~y~~~~~~iglIlGTG~Na~yi 260 (465)
|++ +.|++-.-|+.+++++..-..+ ..+.+++||+.-....
T Consensus 230 Gl~~g~pV~~g~~D~~aa~~g~g~~~~-g~~~~s~GTs~~~~~~ 272 (511)
T 3hz6_A 230 GFVSGTPVLCGLGDAGAATLGVGVLDD-EDAYLHLGTTGWLARL 272 (511)
T ss_dssp CCCTTCEEECCEEHHHHHHHHTTCCST-TCEEEEESSSEEEEEE
T ss_pred CCCCCCeEEEECchHHHHHHhCCCCCC-CcEEEEecchhhheee
Confidence 764 6678888999999998764443 3468899998644443
No 105
>3cet_A Conserved archaeal protein; Q6M145, MRR63, NESG, XRAY, structure, structural genomics, PSI-2, protein structure initiative; 1.80A {Methanococcus maripaludis S2} PDB: 3c0b_A
Probab=39.57 E-value=19 Score=35.50 Aligned_cols=61 Identities=11% Similarity=0.037 Sum_probs=40.3
Q ss_pred HHHHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEecc
Q 012386 338 LRVVGKKLKDILEISNTSLKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGG 408 (465)
Q Consensus 338 ~~~~~~il~~~~~~~~~~~~d~~~~~~ia~~V~~RaA~l~aagiaaii~~~~~~~~~~~~~~~~~V~idGs 408 (465)
.......|...++.+ ...-.....+++|+.+.++..+.+..++..++.+.+- . -.|+.+||
T Consensus 225 ~~~~~~RLAr~vg~D-~~~~~~~~~~~lA~~~~~~q~~~I~~av~~v~~~~~~--------~-~vv~aG~G 285 (334)
T 3cet_A 225 KRSSLVRISKVLCSD-LDQISEIDAENIAKNYYELWKELILENVENVAEKYGS--------K-KVVITGLG 285 (334)
T ss_dssp HHHHHHHHHHTTTCC-TTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------C-EEEEESTT
T ss_pred HHHHHHHHHHHhCCC-hhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------C-eEEEeCCc
Confidence 344455555555542 2222244567899999999999999999999877643 2 25667766
No 106
>3cer_A Possible exopolyphosphatase-like protein; NESG, BLR13, Q8G5J2, X-RAY, structure, structural genomics, PSI-2; 2.40A {Bifidobacterium longum NCC2705}
Probab=39.45 E-value=59 Score=31.83 Aligned_cols=63 Identities=13% Similarity=0.174 Sum_probs=39.4
Q ss_pred eEEEEEeCCceEEEEEEEecCCc-ceeEEEEeeeeecCCCccc-CC-cchHHHHHHHHHHHHHHhh
Q 012386 96 LFYALDLGGTNFRVLRVQLGGRE-GRVVKQEFEEVSIPPHLMT-GS-SHELFDYIAAALAKFVATE 158 (465)
Q Consensus 96 ~~LaiDlGGTNlRv~~V~l~g~~-~~i~~~~~~~~~ip~~~~~-~~-~~~lfd~Ia~~I~~fl~~~ 158 (465)
.|-+||+|-.++|..+.+...++ ..++........+-+.+.. +. .++-.+...+++..|.+..
T Consensus 17 ~~A~IDiGSNsiRL~I~~~~~~~~~~~i~~~k~~vrLg~g~~~~g~ls~eai~r~~~aL~~f~~~~ 82 (343)
T 3cer_A 17 TVAGIDCGTNSIRLKIARVDADGMHEVVPRILRVIRLGQDVDKTHRFADEALERAYVAAREFAGVI 82 (343)
T ss_dssp EEEEEEECSSCEEEEEEEEETTEEEEEEEEEEECCCTTTTHHHHSSCCHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEcccceeEeEEEEEcCCCCEEEEEEEEEEeeCCCCccccCCcCHHHHHHHHHHHHHHHHHH
Confidence 58899999999999999986322 2334333222233333211 11 4567788888999987654
No 107
>2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14
Probab=37.88 E-value=2.1e+02 Score=27.25 Aligned_cols=19 Identities=21% Similarity=0.436 Sum_probs=16.0
Q ss_pred ceeEEEEEeCCceEEEEEE
Q 012386 94 KGLFYALDLGGTNFRVLRV 112 (465)
Q Consensus 94 ~G~~LaiDlGGTNlRv~~V 112 (465)
...++|||+|+|..|+.++
T Consensus 19 ~~~~iGIDiGsTt~K~V~~ 37 (287)
T 2ews_A 19 SHMKVGIDAGGTLIKIVQE 37 (287)
T ss_dssp --CEEEEEECSSEEEEEEE
T ss_pred CCeEEEEEEChhhEEEEEE
Confidence 3579999999999999887
No 108
>1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, superfamily; 1.90A {Escherichia coli} SCOP: a.211.1.5 c.55.1.8 c.55.1.8 PDB: 2flo_A*
Probab=37.19 E-value=73 Score=33.02 Aligned_cols=63 Identities=19% Similarity=0.223 Sum_probs=41.0
Q ss_pred eEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCCccc-CC-cchHHHHHHHHHHHHHHhh
Q 012386 96 LFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMT-GS-SHELFDYIAAALAKFVATE 158 (465)
Q Consensus 96 ~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~-~~-~~~lfd~Ia~~I~~fl~~~ 158 (465)
.|-+||+|-.++|..+++..++..+++........+-+.+.. +. .++-.+...++++.|.+.-
T Consensus 12 ~~AaIDiGSNSirL~I~~~~~~~~~~l~~~k~~vrLg~g~~~~g~Ls~eai~r~~~~L~~f~~~~ 76 (513)
T 1u6z_A 12 EFAAVDLGSNSFHMVIARVVDGAMQIIGRLKQRVHLADGLGPDNMLSEEAMTRGLNCLSLFAERL 76 (513)
T ss_dssp CEEEEEECSSCEEEEEEEEETTEEEEEEEEEECCCTGGGBCTTCCBCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEEeccccEEEEEEEEcCCeeEEEEeeEEEEeccCcccccCCcCHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999865433444433222333333321 11 3577888889999997643
No 109
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A*
Probab=35.59 E-value=46 Score=32.41 Aligned_cols=51 Identities=18% Similarity=0.212 Sum_probs=33.1
Q ss_pred cceeEEEEEeCCceEEEEEEEecCCcceeEEEEeeeeecCCCcccCCcchHHHHHHHHHH
Q 012386 93 EKGLFYALDLGGTNFRVLRVQLGGREGRVVKQEFEEVSIPPHLMTGSSHELFDYIAAALA 152 (465)
Q Consensus 93 E~G~~LaiDlGGTNlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~I~ 152 (465)
+.+.++.+|+||.++=++++.++++ .++... ...+| ..++++.++|++.++
T Consensus 188 ~~~~vlVvDIGgGTtDv~vi~~~~g--~~v~~~--s~~~~-----lGg~~i~~~I~~~i~ 238 (346)
T 2fsj_A 188 QPGYGVVIDVGSRTTDVLTINLMDM--EPVVEL--SFSLQ-----IGVGDAISALSRKIA 238 (346)
T ss_dssp CSSEEEEEEECSSCEEEEEEETTTT--EECGGG--CEEES-----CCHHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCcEEEEEEEecCC--EEEeec--CCCcc-----hhHHHHHHHHHHHHH
Confidence 4477899999999999999998653 111100 11222 346678888876554
No 110
>3s5p_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.30A {Giardia lamblia}
Probab=34.60 E-value=17 Score=32.04 Aligned_cols=60 Identities=12% Similarity=0.184 Sum_probs=37.4
Q ss_pred CCCcHHHHHHHHHHHcCCCee-EEEEEec-----hHHHhhccccc-CCceEEEEEEccccceeEEcc
Q 012386 203 VGEDVVGELTKAMERIGLDMR-VAALVND-----TIGTLAGGRYH-NKDAIAAVILGTGTNAAYVER 262 (465)
Q Consensus 203 ~g~dv~~~L~~al~~~gl~v~-v~alvND-----tvatlla~~y~-~~~~~iglIlGTG~Na~yie~ 262 (465)
-|.++++.|.+.|+++|+.|. +-.--+| -.+..++.+.. +....-=+|+|||++.++.-+
T Consensus 31 aG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYPd~a~~va~~V~~g~~d~GIliCGTGiG~sIaAN 97 (166)
T 3s5p_A 31 GGRDLRMFLQQRASAHGYEVMDLGTESDASVDYPDFAKIGCEAVTSGRADCCILVCGTGIGISIAAN 97 (166)
T ss_dssp GGHHHHHHHHHHHHHTTCEEEEEEC--------CHHHHHHHHHHHTTSCSEEEEEESSSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCCcEEEEEcCCcHHHHHHhh
Confidence 478899999999998888762 2111222 23444444443 334444569999999988654
No 111
>3tai_A DNA double-strand break repair protein NURA; recombination, hydrolase; HET: DNA; 2.82A {Pyrococcus furiosus} PDB: 3tal_A* 3taz_A*
Probab=33.89 E-value=41 Score=34.23 Aligned_cols=49 Identities=14% Similarity=0.270 Sum_probs=40.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhcCCCCCCcceeccccccCCCCCcceeEEEEE
Q 012386 49 GTPIGKLRQVADAMTVEMHAGLASEGGSKLKMLISYVDNLPTGDEKGLFYALD 101 (465)
Q Consensus 49 ~~~~~~L~~i~~~~~~em~~gL~~~~~s~~~Mlpt~v~~lP~G~E~G~~LaiD 101 (465)
-+|+..+++|.+-+.+++++-... -++.|++++...+|+..+ ..+.|+|
T Consensus 23 ~is~~~~~~I~~~L~~~l~~~~~~---~~ie~i~~~W~elPe~~~-~~iaAVD 71 (471)
T 3tai_A 23 LLSKQSIERITKILLDELENVREN---EQIRNIINSWKPLPSPEK-SSIYAVD 71 (471)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHTTC---SSHHHHHHTCBCCCCCCC-CEEEEEE
T ss_pred eccHhHHHHHHHHHHHHHHHHHhh---hchhhhhhhceECCCCCC-ceEEEec
Confidence 389999999999999999888765 268899999999997754 4788988
No 112
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=33.71 E-value=35 Score=29.39 Aligned_cols=22 Identities=27% Similarity=0.270 Sum_probs=19.3
Q ss_pred eEEEEEeCCceEEEEEEEecCC
Q 012386 96 LFYALDLGGTNFRVLRVQLGGR 117 (465)
Q Consensus 96 ~~LaiDlGGTNlRv~~V~l~g~ 117 (465)
.+||||.|-.++-+++++..|.
T Consensus 4 riLGiDpG~~riGvAv~d~~g~ 25 (150)
T 1vhx_A 4 RILGLDLGTKTLGVALSDEMGW 25 (150)
T ss_dssp EEEEEEECSSEEEEEEECTTSS
T ss_pred EEEEEEccCCEEEEEEEECCCC
Confidence 5899999999999999987664
No 113
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=32.29 E-value=44 Score=36.69 Aligned_cols=50 Identities=18% Similarity=0.217 Sum_probs=31.7
Q ss_pred EEEEecceeccchhHHHHHHHHHHHHhccCCCccEEE---EEeCChh-HHHHHHHHHHhc
Q 012386 402 VIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVI---EHSNDGS-GIGAALLAASHS 457 (465)
Q Consensus 402 ~V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l---~~a~Dgs-~iGAAl~Aa~~~ 457 (465)
+|++.|||+. +..+++.+.+.+++. . -.+.+ .+.+||| -+|+|++|+..-
T Consensus 708 ~VvLSGGVa~-N~~L~~~l~~~L~~~----G-~~v~~p~~vP~nDgGiALGQA~iA~~~L 761 (772)
T 4g9i_A 708 NVALSGGVAY-NELITKMIRKVVEAN----G-LNFHVTTEVPRGDNGVNVGQAFLGGLYL 761 (772)
T ss_dssp CCCEESSTTC-CHHHHHHHHHHGGGS----S-CCCCCCTTSCSSGGGHHHHHHHHHHHHH
T ss_pred EEEEEchHHH-HHHHHHHHHHHHHHC----C-CEEEccCCCCCCcchHHHHHHHHHHHHH
Confidence 5889999986 455666666655432 1 12222 2357777 599999987654
No 114
>3aap_A Ectonucleoside triphosphate diphosphohydrolase I; adenosine triphosphatase, ntpdase; 1.60A {Legionella pneumophila} PDB: 3aaq_A* 3aar_A*
Probab=29.04 E-value=1.8e+02 Score=28.38 Aligned_cols=61 Identities=18% Similarity=0.101 Sum_probs=34.2
Q ss_pred ceeEEEEEeCCceEEEEEEEecCC-cceeEEEEeee-eecCCCcccCCcchHHHHHHHHHHHHHH
Q 012386 94 KGLFYALDLGGTNFRVLRVQLGGR-EGRVVKQEFEE-VSIPPHLMTGSSHELFDYIAAALAKFVA 156 (465)
Q Consensus 94 ~G~~LaiDlGGTNlRv~~V~l~g~-~~~i~~~~~~~-~~ip~~~~~~~~~~lfd~Ia~~I~~fl~ 156 (465)
..++.+||+|-+.+|+.+.+.... ....+.+..+. .++...+-.... + -+-+...+.+|..
T Consensus 2 ~~~~avID~GSns~Rl~I~~~~~~~~~~~i~~~~~~~~k~~~gLs~~~~-~-~~~~~~~l~~f~~ 64 (353)
T 3aap_A 2 HSCIAVIDAGSTGSRLHIYSYDTDDTNTPIHIEEIWNKKIKPGFASIQP-N-SVTIDAYLTMLLA 64 (353)
T ss_dssp CEEEEEEEECSSCEEEEEEEEEECTTSCEEEEEEEEEEEESSCGGGSCC-S-HHHHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCeEEEEEEEcCCCCCceeEeeeeeeeccCCChhhcCC-C-HHHHHHHHHHHHH
Confidence 446899999999999999987532 22333332111 344444422211 1 3455666666654
No 115
>3zyy_X Iron-sulfur cluster binding protein; iron-sulfur-binding protein, ashka family, ATPase; 2.20A {Carboxydothermus hydrogenoformans}
Probab=28.97 E-value=1e+02 Score=32.89 Aligned_cols=37 Identities=19% Similarity=0.176 Sum_probs=26.6
Q ss_pred EEechHHHhhcccccCCceEEEEEEccccceeEEccCC
Q 012386 227 LVNDTIGTLAGGRYHNKDAIAAVILGTGTNAAYVERAH 264 (465)
Q Consensus 227 lvNDtvatlla~~y~~~~~~iglIlGTG~Na~yie~~~ 264 (465)
|=-|++|.+++......+ .+.+.+-=|||+=.+...+
T Consensus 353 VGaDi~Ag~la~~~~~~~-~~~L~iDiGTNgEivL~~~ 389 (631)
T 3zyy_X 353 VGGDITSGVLYTGLANSD-EITLFIDIGTNGEMVLGNK 389 (631)
T ss_dssp BCHHHHHHHHHHTTTSCS-SCEEEEECSSEEEEEEECS
T ss_pred ccHHHHHHHHhcCcccCC-CCEEEEEcCCCeEEEEeeC
Confidence 446999999888754322 3578888899998887643
No 116
>3ph3_A Ribose-5-phosphate isomerase; alpha-beta-alpha sandwich fold; HET: RB5; 2.07A {Clostridium thermocellum} SCOP: c.121.1.1 PDB: 3ph4_A*
Probab=28.37 E-value=11 Score=33.40 Aligned_cols=60 Identities=17% Similarity=0.240 Sum_probs=38.3
Q ss_pred CCCcHHHHHHHHHHHcCCCee-EEEEEech-----HHHhhccccc-CCceEEEEEEccccceeEEcc
Q 012386 203 VGEDVVGELTKAMERIGLDMR-VAALVNDT-----IGTLAGGRYH-NKDAIAAVILGTGTNAAYVER 262 (465)
Q Consensus 203 ~g~dv~~~L~~al~~~gl~v~-v~alvNDt-----vatlla~~y~-~~~~~iglIlGTG~Na~yie~ 262 (465)
-|.++.+.|.+.|+++|..|. +-.--.|+ .+..++.+.. ++...-=+|+|||++.++.-+
T Consensus 30 aG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGTGiG~sIaAN 96 (169)
T 3ph3_A 30 GGYNLKREIADFLKKRGYEVIDFGTHGNESVDYPDFGLKVAEAVKSGECDRGIVICGTGLGISIAAN 96 (169)
T ss_dssp GGHHHHHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHTTSSSEEEEEESSSHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEcCCcHHHHHHhh
Confidence 478899999999998887752 11111222 4444555543 333444569999999988654
No 117
>3he8_A Ribose-5-phosphate isomerase; CTRPI B, isomerization; 1.90A {Clostridium thermocellum} PDB: 3hee_A*
Probab=28.18 E-value=11 Score=32.69 Aligned_cols=60 Identities=17% Similarity=0.240 Sum_probs=38.1
Q ss_pred CCCcHHHHHHHHHHHcCCCee-EEEEEech-----HHHhhccccc-CCceEEEEEEccccceeEEcc
Q 012386 203 VGEDVVGELTKAMERIGLDMR-VAALVNDT-----IGTLAGGRYH-NKDAIAAVILGTGTNAAYVER 262 (465)
Q Consensus 203 ~g~dv~~~L~~al~~~gl~v~-v~alvNDt-----vatlla~~y~-~~~~~iglIlGTG~Na~yie~ 262 (465)
-|.++.+.|.+.|+++|+.|. +-.--.|+ .+..++.+.. ++...-=+|+|||++.+..-+
T Consensus 10 aG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGTGiG~siaAN 76 (149)
T 3he8_A 10 GGYNLKREIADFLKKRGYEVIDFGTHGNESVDYPDFGLKVAEAVKSGECDRGIVICGTGLGISIAAN 76 (149)
T ss_dssp GGHHHHHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHTTSSSEEEEEESSSHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEcCCcHHHHHHhh
Confidence 478899999999998887652 11111222 4444555543 333444569999999988654
No 118
>3qfu_A 78 kDa glucose-regulated protein homolog; HSP70, KAR2, BIP, chaperone; HET: ADP; 1.80A {Saccharomyces cerevisiae} PDB: 3qfp_A 3qml_A 3ldo_A* 3ldl_A 3ldn_A* 3ldp_A*
Probab=26.61 E-value=2.6e+02 Score=26.90 Aligned_cols=29 Identities=24% Similarity=0.401 Sum_probs=22.7
Q ss_pred CCCCcceeEEEEEeCCceEEEEEEEecCC
Q 012386 89 PTGDEKGLFYALDLGGTNFRVLRVQLGGR 117 (465)
Q Consensus 89 P~G~E~G~~LaiDlGGTNlRv~~V~l~g~ 117 (465)
..+.....++.+|+||.++-+.+++..+.
T Consensus 200 ~~~~~~~~vlV~D~Gggt~dvsv~~~~~~ 228 (394)
T 3qfu_A 200 DKSDKEHQIIVYDLGGGTFDVSLLSIENG 228 (394)
T ss_dssp TSCSSCEEEEEEEECSSCEEEEEEEEETT
T ss_pred ccCCCCceEEEEEcCCCceeEEEEEEeCC
Confidence 33344557899999999999999988654
No 119
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1
Probab=24.15 E-value=33 Score=33.61 Aligned_cols=52 Identities=21% Similarity=0.280 Sum_probs=33.5
Q ss_pred HHHHHHHHHHcCCCeeEEEEEechHHHhhcccccC---CceEEEEEEcccc-ceeEEc
Q 012386 208 VGELTKAMERIGLDMRVAALVNDTIGTLAGGRYHN---KDAIAAVILGTGT-NAAYVE 261 (465)
Q Consensus 208 ~~~L~~al~~~gl~v~v~alvNDtvatlla~~y~~---~~~~iglIlGTG~-Na~yie 261 (465)
.+.+.+++++.|+++ +.++|+.+|++++..... +...+-+=+|-|| ..+.+.
T Consensus 151 r~~~~~a~~~aGl~~--~~li~Ep~Aaa~~~~~~~~~~~~~~lVvD~Gggttdvsv~~ 206 (383)
T 1dkg_D 151 RQATKDAGRIAGLEV--KRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIE 206 (383)
T ss_dssp HHHHHHHHHHTTCEE--SCCCBHHHHHHHHHTCCC-CCEEEEEEEEECSSCEEEEEEE
T ss_pred HHHHHHHHHHcCCce--EEEeccHHHHHHHHHhccCCCCcEEEEEEcCCCeEEEEEEE
Confidence 456677777677764 689999999988755432 2344445567777 444444
No 120
>1o1x_A Ribose-5-phosphate isomerase RPIB; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.90A {Thermotoga maritima} SCOP: c.121.1.1
Probab=23.52 E-value=23 Score=30.89 Aligned_cols=61 Identities=8% Similarity=0.136 Sum_probs=37.4
Q ss_pred CCCCcHHHHHHHHHHHcCCCeeEEEEE-ech-----HHHhhccccc-CCceEEEEEEccccceeEEcc
Q 012386 202 TVGEDVVGELTKAMERIGLDMRVAALV-NDT-----IGTLAGGRYH-NKDAIAAVILGTGTNAAYVER 262 (465)
Q Consensus 202 ~~g~dv~~~L~~al~~~gl~v~v~alv-NDt-----vatlla~~y~-~~~~~iglIlGTG~Na~yie~ 262 (465)
--|.++.+.|.+.|+++|..|.=.... .|. .+..++++.. ++...-=+|+|||++.+..-+
T Consensus 21 haG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGTGiG~siaAN 88 (155)
T 1o1x_A 21 HAAFELKEKVKNYLLGKGIEVEDHGTYSEESVDYPDYAKKVVQSILSNEADFGILLCGTGLGMSIAAN 88 (155)
T ss_dssp STTHHHHHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHTTSCSEEEEEESSSHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHCCCEEEEeCCCCCCCCChHHHHHHHHHHHHcCCCceEEEEcCCcHHHHHHhh
Confidence 358899999999999888865211111 111 2223333332 334455569999999988654
No 121
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae}
Probab=22.18 E-value=81 Score=32.69 Aligned_cols=49 Identities=18% Similarity=0.266 Sum_probs=36.3
Q ss_pred EEEecceeccchhHHHHHHHHHHHHhccCCCccEEEEEe------CChhHHHHHHHHHH
Q 012386 403 IALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHS------NDGSGIGAALLAAS 455 (465)
Q Consensus 403 V~idGsv~~~~~~f~~~l~~~l~~~~~~~~~~~v~l~~a------~Dgs~iGAAl~Aa~ 455 (465)
|.+.||-. .+|.|.++|++.|+.+++ . .+|++... ..+..+|++++|..
T Consensus 417 IvLsGGst-~~pGf~~Rl~~El~~l~p-~--~~i~v~~~~~~~er~~s~WiGgsilasl 471 (498)
T 3qb0_A 417 VVLTGGTS-SIPGLSDRLMTELNKILP-S--LKFRILTTGHTIERQYQSWLGGSILTSL 471 (498)
T ss_dssp EEEESGGG-GSTTHHHHHHHHHHHHST-T--SCCCEECCSCTGGGGSHHHHHHHHHHTC
T ss_pred EEEeCCcc-CchhHHHHHHHHHHHhCC-C--CeeEEEcCCCCCccCccEEcccEEEecC
Confidence 55566643 589999999999999876 2 34555443 57889999999854
No 122
>4em8_A Ribose 5-phosphate isomerase B; ssgcid, seattle structural genomics center for infectious DI niaid; 1.95A {Anaplasma phagocytophilum}
Probab=22.02 E-value=26 Score=30.36 Aligned_cols=59 Identities=12% Similarity=0.128 Sum_probs=38.4
Q ss_pred CCCcHHHHHHHHHHHcCCCee-EEEEEec------hHHHhhcccccCCceEEEEEEccccceeEEcc
Q 012386 203 VGEDVVGELTKAMERIGLDMR-VAALVND------TIGTLAGGRYHNKDAIAAVILGTGTNAAYVER 262 (465)
Q Consensus 203 ~g~dv~~~L~~al~~~gl~v~-v~alvND------tvatlla~~y~~~~~~iglIlGTG~Na~yie~ 262 (465)
-|.++++.|.+.|+++|+.|. +-.--.| -.+..++++.. +...-=+|+|||++.+..-+
T Consensus 17 aG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~~dYpd~a~~va~~V~-~~d~GIliCGTGiG~siaAN 82 (148)
T 4em8_A 17 AGVELRLFLSAYLRDLGCEVFDCGCDPKEHSVDYPDYVHDVVREVS-DTSFGVLICGTGIGMSIAAN 82 (148)
T ss_dssp GGHHHHHHHHHHHHHTTCEEEECCCCTTCSCCCGGGGTHHHHTTCB-TTBEEEEEESSSHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHCCCEEEEeCCCCCCCCCChHHHHHHHHHHHH-HhCeEEEEccCcHHHHHHHh
Confidence 478899999999998887652 1111123 23444555545 44454569999999988654
No 123
>1mul_A NS2, HU-2, DNA binding protein HU-alpha; histone-like; HET: DNA; 2.30A {Escherichia coli} SCOP: a.55.1.1 PDB: 2o97_A
Probab=21.95 E-value=1.4e+02 Score=22.83 Aligned_cols=35 Identities=9% Similarity=0.175 Sum_probs=30.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCC
Q 012386 39 AILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASE 73 (465)
Q Consensus 39 ~~l~~~~~~~~~~~~~L~~i~~~~~~em~~gL~~~ 73 (465)
++++.+.+...++..+...+.+.|.+.|.+.|...
T Consensus 5 eli~~ia~~~~ls~~~~~~~l~~~~~~i~~~L~~g 39 (90)
T 1mul_A 5 QLIDVIAEKAELSKTQAKAALESTLAAITESLKEG 39 (90)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 56666777788999999999999999999999863
No 124
>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A
Probab=21.53 E-value=52 Score=31.61 Aligned_cols=16 Identities=31% Similarity=0.281 Sum_probs=0.0
Q ss_pred eEEEEEeCCceEEEEE
Q 012386 96 LFYALDLGGTNFRVLR 111 (465)
Q Consensus 96 ~~LaiDlGGTNlRv~~ 111 (465)
..++||+|.||.+++.
T Consensus 4 ~~igIDlGT~~s~v~~ 19 (344)
T 1jce_A 4 KDIGIDLGTANTLVFL 19 (344)
T ss_dssp CEEEEEECSSEEEEEE
T ss_pred ceEEEEcCcCcEEEEE
No 125
>1p71_A DNA-binding protein HU; protein-DNA complex, DNA bending, DNA binding protein-DN; 1.90A {Anabaena SP} SCOP: a.55.1.1 PDB: 1p51_A 1p78_A
Probab=20.87 E-value=1.4e+02 Score=23.05 Aligned_cols=35 Identities=14% Similarity=0.162 Sum_probs=29.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCC
Q 012386 39 AILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASE 73 (465)
Q Consensus 39 ~~l~~~~~~~~~~~~~L~~i~~~~~~em~~gL~~~ 73 (465)
++++.+.+...++..+...+.+.|.+.|.+.|...
T Consensus 5 eli~~ia~~~~ls~~~~~~~l~~~~~~i~~~L~~g 39 (94)
T 1p71_A 5 ELVDAVAEKASVTKKQADAVLTAALETIIEAVSSG 39 (94)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 45566666678999999999999999999999863
No 126
>3rhi_A DNA-binding protein HU; structural genomics, center for structural genom infectious diseases, csgid; 2.48A {Bacillus anthracis} SCOP: a.55.1.1 PDB: 1hue_A 1huu_A
Probab=20.64 E-value=1.3e+02 Score=23.17 Aligned_cols=35 Identities=11% Similarity=0.202 Sum_probs=29.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCC
Q 012386 39 AILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASE 73 (465)
Q Consensus 39 ~~l~~~~~~~~~~~~~L~~i~~~~~~em~~gL~~~ 73 (465)
++++.+.+...++..+...+.+.|.+.|.+.|...
T Consensus 8 eLi~~ia~~~~lsk~~~~~~v~~~~~~i~~~L~~g 42 (93)
T 3rhi_A 8 ELIKNVAQNAEISQKEATVVVQTVVESITNTLAAG 42 (93)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHhCC
Confidence 45556666678999999999999999999999863
No 127
>1b8z_A Protein (histonelike protein HU); thermostable DNA binding protein; 1.60A {Thermotoga maritima} SCOP: a.55.1.1 PDB: 1riy_A
Probab=20.54 E-value=1.5e+02 Score=22.66 Aligned_cols=35 Identities=14% Similarity=0.331 Sum_probs=29.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCC
Q 012386 39 AILKEMEEKCGTPIGKLRQVADAMTVEMHAGLASE 73 (465)
Q Consensus 39 ~~l~~~~~~~~~~~~~L~~i~~~~~~em~~gL~~~ 73 (465)
++++.+.+...++..+...+.+.|.+.|.+.|...
T Consensus 5 eli~~ia~~~~ls~~~~~~~l~~~~~~i~~~L~~g 39 (90)
T 1b8z_A 5 ELIDRVAKKAGAKKKDVKLILDTILETITEALAKG 39 (90)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHhCC
Confidence 45566666778999999999999999999999863
No 128
>2iir_A Acetate kinase; transferase; 3.30A {Thermotoga maritima}
Probab=20.45 E-value=2.3e+02 Score=28.51 Aligned_cols=46 Identities=17% Similarity=0.098 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCceEEEEEecceeccchhHHHHHHHHHH
Q 012386 367 DIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVK 425 (465)
Q Consensus 367 ~~V~~RaA~l~aagiaaii~~~~~~~~~~~~~~~~~V~idGsv~~~~~~f~~~l~~~l~ 425 (465)
+..+.|-++++++-.+++ +.. . .|++.||+-++.+.+++.+.+.+.
T Consensus 303 d~f~yri~k~IGa~~a~L----ggv-------D--aIVFTgGIGEns~~vR~~i~~~l~ 348 (403)
T 2iir_A 303 EIYDYRIAKYIGAYAAAM----NGV-------D--AIVFTAGVGENSPITREDVCSYLE 348 (403)
T ss_dssp HHHHHHHHHHHHHHHHHH----TCC-------S--EEEEEHHHHTTCHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHHHHHHHh----CCC-------C--EEEECcccccCCHHHHHHHHhhhh
Confidence 345667777887766654 321 3 688999999999999999988774
Done!