BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012388
(464 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q4R380|DPOLL_MACFA DNA polymerase lambda OS=Macaca fascicularis GN=POLL PE=2 SV=1
Length = 575
Score = 188 bits (477), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 135/462 (29%), Positives = 223/462 (48%), Gaps = 44/462 (9%)
Query: 19 FAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEALLQQVSK 75
+ +R +V G+ R +++ +++VQ G + VTH++ MD E L+ +
Sbjct: 41 LSSLRAHVVRTGIGRARAELFEKQIVQHGGQLCPVQGPGVTHIVVDEGMDYERALRLLRL 100
Query: 76 QHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNG--NTSS 133
+++ WL SL L E+ D+ + I + L Q Q + +S
Sbjct: 101 P-RLPPGAQLVKSAWL--SLCLQERRLVDVAGFSI-----FIPSKYLDQSQPSKAEQDAS 152
Query: 134 DGESSHRKKIKSS----------------TEDVEHFQAESKGDVETNALSEAPNSPMSSE 177
+H ++++ T++ + QA+ D E + E S E
Sbjct: 153 LPPGTHEALLQTALPPPPSPTRPVSPPQKTKEAPNTQAQPISDDEASDGEETQVSAADLE 212
Query: 178 SLTNTLSTASASPDF---SSHHITDPSLLYNPP-----DLNKNITEIFGKLINIYRALGE 229
+L + AS D + + D + P + N +ITE L Y G+
Sbjct: 213 ALISGHYPASLEGDCDPSPAPVVLDKWVCAQPSSQKATNHNLHITEKLEVLAKAYSVQGD 272
Query: 230 DRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDE 289
R+ Y KAI ++ + S + +PGIGK M + I EI+ +G L KL+H E
Sbjct: 273 KWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SE 330
Query: 290 KVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRH 349
V + LF +WG G TAQ Y++G R+L+D++++ SLT Q +GLK+++D R+PR
Sbjct: 331 SVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYNDFLERMPRE 390
Query: 350 EVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKK 409
E ++E+ +QKA + ++ + GSYRRGKA+CGD+DV+I HPD +SH+G S+ +
Sbjct: 391 EATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDS 450
Query: 410 LKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHR 451
L++ FL +DL+ + E G Y G+C PG RHR
Sbjct: 451 LRQQGFLTDDLV--SQEENGQQ---QKYLGVCRLPGPGWRHR 487
>sp|Q9UGP5|DPOLL_HUMAN DNA polymerase lambda OS=Homo sapiens GN=POLL PE=1 SV=1
Length = 575
Score = 188 bits (477), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 109/324 (33%), Positives = 170/324 (52%), Gaps = 35/324 (10%)
Query: 133 SDGESSHRKKIKSSTEDVE-----HFQAESKGDVETNALSEAPNSPMSSESLTNTLSTAS 187
SD E+S ++ + S D+E H+ +GD E P + ++ + A
Sbjct: 194 SDDEASDGEETQVSAADLEALISGHYPTSLEGDCE----------PSPAPAVLDKWVCAQ 243
Query: 188 ASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLP 247
S +++H N +ITE L Y G+ R+ Y KAI ++
Sbjct: 244 PSSQKATNH-------------NLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFH 290
Query: 248 FKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 307
+ S + +PGIGK M + I EI+ +G L KL+H E V + LF +WG G T
Sbjct: 291 KPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHI--SESVPVLELFSNIWGAGTKT 348
Query: 308 AQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLP 367
AQ Y++G R+L+D++++ SLT Q +GLK++ D R+PR E ++E+ +QKA +
Sbjct: 349 AQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNS 408
Query: 368 EVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE 427
++ + GSYRRGKA+CGD+DV+I HPD +SH+G S+ + L++ FL +DL+ + E
Sbjct: 409 GLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLV--SQEE 466
Query: 428 EGTDSGVDTYFGLCTYPGRELRHR 451
G Y G+C PG RHR
Sbjct: 467 NGQQ---QKYLGVCRLPGPGRRHR 487
>sp|Q5RKI3|DPOLL_RAT DNA polymerase lambda OS=Rattus norvegicus GN=Poll PE=2 SV=1
Length = 573
Score = 184 bits (466), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 125/463 (26%), Positives = 214/463 (46%), Gaps = 33/463 (7%)
Query: 12 ALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVL---AMDLEA 68
A D+ G + +R ++ G+ R +++ ++++Q G V + VTH++ MD E
Sbjct: 33 AGDARGWLSSLRAHIMPTGIGRARAELFEKQIIQHGGQVCSAQAPGVTHIVVDEGMDYER 92
Query: 69 LLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGN 128
L+ + L +++ WL SL L EK D L ++ + S+ +
Sbjct: 93 ALRLLRLPQLPP-GAQLVKSAWL--SLCLQEKKLTDTDGFSLSSPKRSLNEPQPSKSGQD 149
Query: 129 GNTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTNTLSTASA 188
+ R + S K + ++ + +S+ +S+A
Sbjct: 150 ASAPGTQGVLPRTTLSLSPPCTRAVSPPPKAEKPPKTQTQLSSEDEASDGEGPQVSSADL 209
Query: 189 SPDFSSHHITDPSLLYNP--------------------PDLNKNITEIFGKLINIYRALG 228
S H+ T P P + N +ITE L Y G
Sbjct: 210 QALISGHYPTPPGEDGGPDPAPEALGKWVCAQPSSQKATNYNLHITEKLEVLAKAYNVQG 269
Query: 229 EDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKD 288
+ R+ Y KAI ++ + S + +PG+G+ M + + EI+ +G L KL+H
Sbjct: 270 DKWRALGYAKAINALKSFHKPVSSYQEACSIPGVGRRMAEKVMEILESGHLRKLDHIS-- 327
Query: 289 EKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPR 348
+ V + LF +WG G TAQ Y +G R+L+D++ SLT Q +GLK++DD R+PR
Sbjct: 328 DSVPVLELFSNIWGAGTKTAQMWYHQGFRSLEDIRGLASLTAQQAIGLKHYDDFLDRMPR 387
Query: 349 HEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVK 408
E ++E++++ + + P ++ + GS+RRGK +CGD+DV+I HPD +SH+G S +
Sbjct: 388 EEAAEIEQMVRVSAQAFNPGLLCVACGSFRRGKVTCGDVDVLITHPDGRSHQGIFSPLLD 447
Query: 409 KLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHR 451
L++ FL +DL+ + E G Y G+C PG RHR
Sbjct: 448 SLRQQGFLTDDLV--SQEENGQQ---QKYLGVCRLPGAGQRHR 485
>sp|Q9QXE2|DPOLL_MOUSE DNA polymerase lambda OS=Mus musculus GN=Poll PE=2 SV=1
Length = 573
Score = 182 bits (463), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 123/466 (26%), Positives = 213/466 (45%), Gaps = 43/466 (9%)
Query: 14 DSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLA---MDLEALL 70
++ G + +R ++ G+ R +++ ++++ G V + VTH++ MD E L
Sbjct: 35 EARGWLSSLRAHIMPAGIGRARAELFEKQIIHHGGQVCSAQAPGVTHIVVDEDMDYERAL 94
Query: 71 QQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQIQGNGN 130
+ + +++ WL L+ G + + + + R L + Q + +
Sbjct: 95 RLLRLP-QLPPGAQLVKSTWLSLCLQEGRLTDTEGFSLPM-------PKRSLDEPQPSKS 146
Query: 131 TSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSESLTN-----TLST 185
++ + +T + + T + +SSE T+ +S+
Sbjct: 147 GQDASAPGTQRDLPRTTLSLSPPHTRAVSPPPTAEKPSRTQAQLSSEDETSDGEGPQVSS 206
Query: 186 ASASPDFSSHHITDPSLLYNP--------------------PDLNKNITEIFGKLINIYR 225
A + H+ T P P + N +ITE L Y
Sbjct: 207 ADLQALITGHYPTPPEEDGGPDPAPEALDKWVCAQPSSQKATNYNLHITEKLEVLAKAYS 266
Query: 226 ALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHF 285
G+ R+ Y KAI ++ + S + +PGIGK M + + EI+ +G L KL+H
Sbjct: 267 VQGDKWRALGYAKAINALKSFHKPVSSYQEACSIPGIGKRMAEKVMEILESGHLRKLDHI 326
Query: 286 EKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTR 345
+ V + LF +WG G TAQ Y +G R L+DL++ SLT Q +GLK++DD R
Sbjct: 327 --SDSVPVLELFSNIWGAGTKTAQMWYHQGFRNLEDLQSLGSLTAQQAIGLKHYDDFLDR 384
Query: 346 IPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSK 405
+PR E ++E+ ++ + + P ++ + GSYRRGK +CGD+DV+I HPD +SH+G S
Sbjct: 385 MPREEAAEIEQTVRISAQAFNPGLLCVACGSYRRGKMTCGDVDVLITHPDGRSHRGIFSC 444
Query: 406 YVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHR 451
+ L++ FL +DL+ + E G Y G+C PG RHR
Sbjct: 445 LLDSLRQQGFLTDDLV--SQEENGQQ---QKYLGVCRLPGPGKRHR 485
>sp|P06766|DPOLB_RAT DNA polymerase beta OS=Rattus norvegicus GN=Polb PE=1 SV=4
Length = 335
Score = 164 bits (414), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 96/260 (36%), Positives = 149/260 (57%), Gaps = 21/260 (8%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+KL ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKLVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF+D + RIPR E+ QM+ ++ +++ PE I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKLDPEYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCT 442
+DV++ HP+ S L + V++L++++F+ + L G + G+C
Sbjct: 191 MDVLLTHPNFTSESSKQPKLLHRVVEQLQKVRFITDTL----------SKGETKFMGVCQ 240
Query: 443 YPG----RELRH-RIDFKVL 457
P E H RID +++
Sbjct: 241 LPSENDENEYPHRRIDIRLI 260
>sp|Q8K409|DPOLB_MOUSE DNA polymerase beta OS=Mus musculus GN=Polb PE=2 SV=3
Length = 335
Score = 162 bits (409), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 96/260 (36%), Positives = 148/260 (56%), Gaps = 21/260 (8%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLVELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF+D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEIKKVDSEYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCT 442
+DV++ HP+ S L + V++L+++ F+ + L G + G+C
Sbjct: 191 MDVLLTHPNFTSESSKQPKLLHRVVEQLQKVHFITDTL----------SKGETKFMGVCQ 240
Query: 443 YP----GRELRH-RIDFKVL 457
P G+E H RID +++
Sbjct: 241 LPSEKDGKEYPHRRIDIRLI 260
>sp|Q27958|DPOLB_BOVIN DNA polymerase beta OS=Bos taurus GN=POLB PE=2 SV=3
Length = 335
Score = 160 bits (406), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 95/260 (36%), Positives = 147/260 (56%), Gaps = 21/260 (8%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLTELANFEKNVNQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF+D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLSEVKKVDSEYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCT 442
+DV++ HP S L + V++L++++F+ + L G + G+C
Sbjct: 191 MDVLLTHPSFTSESAKQPKLLHRVVEQLQKVRFITDTL----------SKGETKFMGVCQ 240
Query: 443 YPG----RELRH-RIDFKVL 457
P +E H RID +++
Sbjct: 241 LPSKNDEKEYPHRRIDIRLI 260
>sp|P06746|DPOLB_HUMAN DNA polymerase beta OS=Homo sapiens GN=POLB PE=1 SV=3
Length = 335
Score = 157 bits (398), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 95/260 (36%), Positives = 145/260 (55%), Gaps = 21/260 (8%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN IT++ +L N + + + + +Y KA VI K P KI+S + K LPG+G +
Sbjct: 11 LNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIA 70
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNED 326
+ I E + TGKL KLE +D+ +I+ V GIGP+ A+K ++G +TL+DL KNED
Sbjct: 71 EKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNED 130
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H QR+GLKYF D + RIPR E+ QM+ ++ ++V E I GS+RRG S GD
Sbjct: 131 KLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGD 190
Query: 387 LDVVIMHPDRKS----HKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCT 442
+DV++ HP S L + V++L+++ F+ + L G + G+C
Sbjct: 191 MDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTL----------SKGETKFMGVCQ 240
Query: 443 YPG----RELRH-RIDFKVL 457
P +E H RID +++
Sbjct: 241 LPSKNDEKEYPHRRIDIRLI 260
>sp|O57383|DPOLB_XENLA DNA polymerase beta OS=Xenopus laevis GN=polb PE=1 SV=3
Length = 334
Score = 155 bits (392), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 88/241 (36%), Positives = 133/241 (55%), Gaps = 16/241 (6%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQD 268
N+ IT+ +L N R + + +Y KA VI K P KI+S + K L G+G + +
Sbjct: 12 NEGITDFLVELANYERNVNRAIHKYNAYRKAASVIAKYPTKIKSGTEAKKLDGVGAKIAE 71
Query: 269 HIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK-NEDS 327
I E + TGKL KLE +D+ +I+ V GIGPA A+K +++G +TLDDL+ NE
Sbjct: 72 KIDEFLATGKLRKLEKIRQDDTSSSINFLTRVTGIGPAAARKFFDEGIKTLDDLRNNEHK 131
Query: 328 LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDL 387
L H Q++GLK+FDD + RIPR E+ QM+ ++ + PE I GS+RRG S GD+
Sbjct: 132 LNHHQKIGLKHFDDFEKRIPRKEMLQMQEIILDKVNNLDPEYIATVCGSFRRGAESSGDM 191
Query: 388 DVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTY 443
D+++ HPD S L + V+ L++ F+ + L+ G + G+C
Sbjct: 192 DILLTHPDFTSESAKQPRLLHQVVQCLEDCNFITDTLV----------KGDTKFMGVCQL 241
Query: 444 P 444
P
Sbjct: 242 P 242
>sp|Q6DRD3|DPOLB_DANRE DNA polymerase beta OS=Danio rerio GN=polb PE=2 SV=2
Length = 336
Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 91/239 (38%), Positives = 131/239 (54%), Gaps = 16/239 (6%)
Query: 209 LNKNITEIFGKLINIYRALGEDRRSF-SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
LN+ IT+ +L N R + + +Y KA VI K P KI+S + K L G+G +
Sbjct: 10 LNEGITDFLVELANYERNVNRAIHKYNAYRKAASVIAKYPQKIKSGTEAKKLDGVGAKIA 69
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-ED 326
+ I E +TTGKL KLE D+ +I+ V GIGPA A+K +++G R L+DLK E
Sbjct: 70 EKIDEFLTTGKLRKLEKIRNDDTSSSINFLTRVTGIGPAAARKFFDEGVRNLEDLKKIEH 129
Query: 327 SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGD 386
L H Q++GLKYF++ + RIPR E+++ME L+ K + V PE I GSYRRG S GD
Sbjct: 130 KLNHHQQIGLKYFEEFEKRIPRSEMQKMEALILKELDIVDPEYIGTICGSYRRGAESSGD 189
Query: 387 LDVVIMHPDRKSHK----GFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLC 441
+D+++ HPD S L V L+ + F+ + L G + G+C
Sbjct: 190 IDILLTHPDFTSQSEKQPKLLHAVVDHLESIGFITDTL----------SKGDTKFMGVC 238
>sp|Q7T6Y4|DPOLX_MIMIV Probable DNA polymerase family X OS=Acanthamoeba polyphaga
mimivirus GN=MIMI_L318 PE=1 SV=2
Length = 354
Score = 134 bits (336), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 88/248 (35%), Positives = 137/248 (55%), Gaps = 30/248 (12%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKL-EHF--EKDEKV 291
S KA+ +++ L F+I A+ VKG+PGIG I+EI+ TGKL L + F EK +++
Sbjct: 41 SIKKALSILKNLDFEITDANDVKGIPGIGAGTIKRIKEILETGKLHDLKDKFSPEKQKQI 100
Query: 292 RTISLFGEVWGIGPATAQKLYEK-GHRTLDDLKN-----EDSLTHSQRLGLKYFDDIKTR 345
I V GIG +TA+KL + G R++DDLK + ++ S LGLKY+ ++
Sbjct: 101 EGIQELENVIGIGSSTAKKLISQYGIRSVDDLKKAIETGKVKVSTSIMLGLKYYGIVQRD 160
Query: 346 IPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHK----- 400
IPR E+ +E+LL K ++ P++ I+ GSYRRGK + GD+DV++ HP K+ K
Sbjct: 161 IPRKEITAIEKLLSKEAHKIDPDLEIIICGSYRRGKKTSGDIDVLMYHPKMKTSKEMLHP 220
Query: 401 ------GFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDF 454
+ + Y+ +L E FL +D+ F+ + + Y G C Y +R RID
Sbjct: 221 EKFDLEPYFNLYIDRLTEKGFLIDDITFNPNKK---------YMGFCKYKLNPVR-RIDI 270
Query: 455 KVLASLSL 462
+ + SL
Sbjct: 271 RFIPYNSL 278
>sp|Q9JIW4|DPOLM_MOUSE DNA-directed DNA/RNA polymerase mu OS=Mus musculus GN=Polm PE=1
SV=2
Length = 496
Score = 122 bits (305), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 114/213 (53%), Gaps = 7/213 (3%)
Query: 232 RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKV 291
R S+ +A V++ LP + S Q+ GLP G+ IQE++ G +++ E+
Sbjct: 175 RLLSFSRAASVLKSLPCPVASLSQLHGLPYFGEHSTRVIQELLEHGTCEEVKQVRCSERY 234
Query: 292 RTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS-LTHSQRLGLKYFDDIKTRIPRHE 350
+T+ LF +V+G+G TA + Y++G RTLD+L+ + LT Q+ GL+Y+ D+ T + R +
Sbjct: 235 QTMKLFTQVFGVGVKTANRWYQEGLRTLDELREQPQRLTQQQKAGLQYYQDLSTPVRRAD 294
Query: 351 VEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKL 410
E +++L++ A + LP + G +RRGK D+D +I HP+ G L K + L
Sbjct: 295 AEALQQLIEAAVRQTLPGATVTLTGGFRRGKLQGHDVDFLITHPEEGQEVGLLPKVMSCL 354
Query: 411 KEM------KFLREDLIFSTHSEEGTDSGVDTY 437
+ ++ R L S H+ S +D +
Sbjct: 355 QSQGLVLYHQYHRSHLADSAHNLRQRSSTMDAF 387
>sp|Q9NP87|DPOLM_HUMAN DNA-directed DNA/RNA polymerase mu OS=Homo sapiens GN=POLM PE=1
SV=1
Length = 494
Score = 117 bits (292), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 114/208 (54%), Gaps = 1/208 (0%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N ++E L G + R ++ +A V++ LP + + Q++GLP G+
Sbjct: 153 NTGLSEALEILAEAAGFEGSEGRLLTFCRAASVLKALPSPVTTLSQLQGLPHFGEHSSRV 212
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE-DSL 328
+QE++ G ++E + E+ +T+ LF +++G+G TA + Y +G RTLDDL+ + L
Sbjct: 213 VQELLEHGVCEEVERVRRSERYQTMKLFTQIFGVGVKTADRWYREGLRTLDDLREQPQKL 272
Query: 329 THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLD 388
T Q+ GL++ D+ T + R +V+ +++++++A + LP + G +RRGK D+D
Sbjct: 273 TQQQKAGLQHHQDLSTPVLRSDVDALQQVVEEAVGQALPGATVTLTGGFRRGKLQGHDVD 332
Query: 389 VVIMHPDRKSHKGFLSKYVKKLKEMKFL 416
+I HP G L + + +L++ +
Sbjct: 333 FLITHPKEGQEAGLLPRVMCRLQDQGLI 360
>sp|P42118|TDT_XENLA DNA nucleotidylexotransferase OS=Xenopus laevis GN=dntt PE=2 SV=1
Length = 507
Score = 115 bits (289), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 111/206 (53%), Gaps = 2/206 (0%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
D N+ T+ F L + R+ ++ +A +I+ LPF I + +++GLP +G M+
Sbjct: 159 DTNRIFTDAFDILAEHFEFCENKGRTVAFLRASSLIKSLPFPITAMKELEGLPWLGDQMK 218
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED- 326
I+EI+ GK K+ +E+ ++ F V+G+G T+ K + G RTL+++KNE
Sbjct: 219 GIIEEILEEGKSYKVLEVMNEERYKSFKQFTSVFGVGLKTSDKWFRMGFRTLEEIKNEKE 278
Query: 327 -SLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
LT Q+ GL Y++DI + + R E E E+L++ + +P+ I+ G +RRGK
Sbjct: 279 LKLTKMQKCGLLYYEDITSYVSRAEAETTEQLIKSIVWKFVPDAIVTLTGGFRRGKKKGH 338
Query: 386 DLDVVIMHPDRKSHKGFLSKYVKKLK 411
D+D++I + K L + LK
Sbjct: 339 DVDILITCARKGKEKNILHNTMSVLK 364
>sp|O02789|TDT_MONDO DNA nucleotidylexotransferase OS=Monodelphis domestica GN=DNTT PE=2
SV=1
Length = 518
Score = 108 bits (270), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 103/187 (55%), Gaps = 2/187 (1%)
Query: 210 NKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDH 269
N+ T+ F L Y D ++ +AI V++ LPF++ S +GLP IG ++
Sbjct: 167 NQRFTDAFEILAKNYEFKENDDTCLTFMRAISVLKCLPFEVVSLKDTEGLPWIGDEVKGI 226
Query: 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS-- 327
++EI+ G+ +++ DE+ ++ LF V+G+G TA K Y G RTL+ ++++ +
Sbjct: 227 MEEIIEDGESLEVQAVLNDERYQSFKLFTSVFGVGLKTADKWYRMGFRTLNKIRSDKTLK 286
Query: 328 LTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDL 387
LT Q+ GL Y++D+ + + E + + L+Q A LP+ ++ G +RRGK D+
Sbjct: 287 LTKMQKAGLCYYEDLIDCVSKAEADAVSLLVQDAVWTFLPDALVTITGGFRRGKEFGHDV 346
Query: 388 DVVIMHP 394
D +I P
Sbjct: 347 DFLITSP 353
>sp|Q92089|TDT_ONCMY DNA nucleotidylexotransferase OS=Oncorhynchus mykiss GN=dntt PE=2
SV=1
Length = 501
Score = 105 bits (261), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/261 (25%), Positives = 128/261 (49%), Gaps = 8/261 (3%)
Query: 163 TNALSEA-PNSPMSSESLTNTLSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLI 221
T+++ E P + S+ NT + SP + +++ + N N +IF ++
Sbjct: 105 TDSMREGRPVRVETRHSIQNTPTGTDCSPPTAVANVSQYACQRRTTTENHN-NKIFTDVM 163
Query: 222 NIYRALGEDRRS----FSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTG 277
E S ++ +A V++ LP + ++GLP +G+ + ++EI+T G
Sbjct: 164 EELAESSEFNESKGPCLAFRQAASVLKSLPSAVHCLKAIQGLPCLGEHTKAVMEEILTFG 223
Query: 278 KLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS--LTHSQRLG 335
+ K+E DE+ + + LF V+G+GP TA+K Y +G R+L ++ E + L QR G
Sbjct: 224 RSFKVEEIRCDERYQALKLFTSVFGVGPKTAEKWYRRGLRSLQEILTEPNIQLNRMQRAG 283
Query: 336 LKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPD 395
Y+ DI + + E + + +++ + P+ I+ G +RRGK D+D ++ P+
Sbjct: 284 FLYYSDISKAVSKAEAKAVGCIIEDTFHWIAPDAILALTGGFRRGKEYGHDVDFLLTMPE 343
Query: 396 RKSHKGFLSKYVKKLKEMKFL 416
+G L + +LK+ L
Sbjct: 344 IGKDEGLLLHVIDRLKDQGIL 364
>sp|O57486|TDT_AMBME DNA nucleotidylexotransferase OS=Ambystoma mexicanum GN=DNTT PE=2
SV=2
Length = 510
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 112/211 (53%), Gaps = 4/211 (1%)
Query: 210 NKN--ITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
NKN T+ F L Y +R S+ +A V++ L F I V GLPG G ++
Sbjct: 159 NKNTLFTDAFEILAENYEFRENERSCLSFRQAASVLKSLTFTIAGMADVDGLPGFGDHIR 218
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I++++ G+ SK+ DE R++ LF ++G+G TA+K + G RTL+++K+ ++
Sbjct: 219 AVIEDLIEDGESSKVSEVLNDEVYRSLKLFTTIFGVGLRTAEKWHRLGIRTLEEIKSNEN 278
Query: 328 LTHS--QRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L S Q GL++++DI + + E + + +++ A LP+ ++ G +RRG +
Sbjct: 279 LKFSKMQIAGLQHYEDILGGVRKAEADAVAMVVRDAVWTFLPDAVVTLTGGFRRGNKTGH 338
Query: 386 DLDVVIMHPDRKSHKGFLSKYVKKLKEMKFL 416
D+D++I P + K L K + K+ L
Sbjct: 339 DVDMLITSPIQGKEKELLHKVINLWKKQDLL 369
>sp|P09838|TDT_MOUSE DNA nucleotidylexotransferase OS=Mus musculus GN=Dntt PE=1 SV=3
Length = 530
Score = 102 bits (254), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 105/190 (55%), Gaps = 6/190 (3%)
Query: 212 NITEIFGKLINIYRALGEDRRS----FSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
N ++F ++I E R + ++ +A V++ LPF I S +G+P +G ++
Sbjct: 163 NYNQLFTDALDILAENDELRENEGSCLAFMRASSVLKSLPFPITSMKDTEGIPCLGDKVK 222
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I+ I+ G+ S+ + DE+ ++ LF V+G+G TA+K + G RTL ++++ S
Sbjct: 223 SIIEGIIEDGESSEAKAVLNDERYKSFKLFTSVFGVGLKTAEKWFRMGFRTLSKIQSDKS 282
Query: 328 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L T Q+ G Y++D+ + + R E E + L+++A LP+ ++ G +RRGK +
Sbjct: 283 LRFTQMQKAGFLYYEDLVSCVNRPEAEAVSMLVKEAVVTFLPDALVTMTGGFRRGKMTGH 342
Query: 386 DLDVVIMHPD 395
D+D +I P+
Sbjct: 343 DVDFLITSPE 352
>sp|P04053|TDT_HUMAN DNA nucleotidylexotransferase OS=Homo sapiens GN=DNTT PE=1 SV=3
Length = 509
Score = 95.1 bits (235), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 75/253 (29%), Positives = 128/253 (50%), Gaps = 11/253 (4%)
Query: 212 NITEIFGKLINIYRALGEDRRS----FSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
N +IF +I E R + ++ +A V++ LPF I S +G+P +G ++
Sbjct: 163 NCNQIFTDAFDILAENCEFRENEDSCVTFMRAASVLKSLPFTIISMKDTEGIPCLGSKVK 222
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I+EI+ G+ S+++ DE+ ++ LF V+G+G T++K + G RTL ++++ S
Sbjct: 223 GIIEEIIEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRTLSKVRSDKS 282
Query: 328 L--THSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L T Q+ G Y++D+ + + R E E + L+++A LP+ + G +RRGK
Sbjct: 283 LKFTRMQKAGFLYYEDLVSCVTRAEAEAVSVLVKEAVWAFLPDAFVTMTGGFRRGKKMGH 342
Query: 386 DLDVVIMHPDRKSHKGFLSKYVKKLKEMK--FLREDLIFSTHSEEGTDS-GVDT--YFGL 440
D+D +I P + L + V L E K L DL+ ST + S VD +F
Sbjct: 343 DVDFLITSPGSTEDEEQLLQKVMNLWEKKGLLLYYDLVESTFEKLRLPSRKVDALDHFQK 402
Query: 441 CTYPGRELRHRID 453
C + R R+D
Sbjct: 403 CFLIFKLPRQRVD 415
>sp|Q09693|DPO4_SCHPO DNA polymerase type-X family protein pol4 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=pol4 PE=3 SV=1
Length = 506
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 103/187 (55%), Gaps = 4/187 (2%)
Query: 228 GEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEK 287
GE R+ +Y AI I+ P I+SA+Q++ +PG G + +E +TG L + E F+K
Sbjct: 197 GESVRTRAYGMAIATIKAFPLPIDSAEQLEKMPGCGPKIVHLWKEFASTGTLKEAEEFQK 256
Query: 288 DEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL-KNEDSLTHSQRLGLKYFDDI-KTR 345
D + + LF ++G+G + A + Y+KG RT++ + K++DS T ++GL++++D KT
Sbjct: 257 DPASKILLLFYNIFGVGASHAAEWYQKGWRTIEQVRKHKDSFTKQIKVGLEFYEDFCKTV 316
Query: 346 IPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSK 405
E E ++ + + + + ++ G +RRGK D+D+V+ S K +
Sbjct: 317 TIEEATEIYETIVSRMPDGIKIQSCLV--GGFRRGKPVGADVDMVLSPSHTHSTKHLVDV 374
Query: 406 YVKKLKE 412
++ L E
Sbjct: 375 LLRILDE 381
>sp|A4PCD4|TDT_EULMA DNA nucleotidylexotransferase OS=Eulemur macaco GN=DNTT PE=3 SV=1
Length = 511
Score = 94.0 bits (232), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 103/189 (54%), Gaps = 2/189 (1%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
+ N T+ F L Y + + ++ +A V++ LPF I + +G+P + ++
Sbjct: 163 NCNHVFTDAFEILAENYEFKENEGCAVTFLRAASVLKSLPFTIITMRDTEGIPCLEDKVK 222
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
I+EI+ G+ S+++ DE+ ++ LF V+G+G T++K + G RTL ++++ S
Sbjct: 223 CIIEEIIEDGESSEVKAVLNDERYQSFKLFTSVFGVGLKTSEKWFRMGFRTLSKIRSDKS 282
Query: 328 LTHS--QRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
LT + QR G Y++D+ + + R E E + L+++A LP+ + G +RRGK
Sbjct: 283 LTFTRMQRAGFHYYEDLVSCVTRAEAEAVSVLVKEAVWAFLPDAFVTMTGGFRRGKKIGH 342
Query: 386 DLDVVIMHP 394
D+D +I P
Sbjct: 343 DVDFLITSP 351
>sp|P36195|TDT_CHICK DNA nucleotidylexotransferase OS=Gallus gallus GN=DNTT PE=2 SV=1
Length = 506
Score = 90.5 bits (223), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 107/203 (52%), Gaps = 7/203 (3%)
Query: 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQ 267
+ NK T+ F + Y + + +A V++ LPF + ++GLP +G ++
Sbjct: 163 NCNKKFTDAFEIMAENYEFKENEIFCLEFLRAASVLKSLPFPVTRMKDIQGLPCMGDRVR 222
Query: 268 DHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDS 327
D I+EI+ G+ S+ + DE+ ++ F V+G+G T++K + G RT++++K + +
Sbjct: 223 DVIEEIIEEGESSRAKDVLNDERYKSFKEFTSVFGVGVKTSEKWFRMGLRTVEEVKADKT 282
Query: 328 LTHS--QRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCG 385
L S QR G Y++D+ + + + E + + +++ LP+ ++ G +RRGK
Sbjct: 283 LKLSKMQRAGFLYYEDLVSCVSKAEADAVSSIVKNTVCTFLPDALVTITGGFRRGKKIGH 342
Query: 386 DLDVVIMHPDRKS-----HKGFL 403
D+D +I P ++ HKG L
Sbjct: 343 DIDFLITSPGQREDDELLHKGLL 365
>sp|P06526|TDT_BOVIN DNA nucleotidylexotransferase OS=Bos taurus GN=DNTT PE=1 SV=2
Length = 509
Score = 89.4 bits (220), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 105/194 (54%), Gaps = 4/194 (2%)
Query: 235 SYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTI 294
++ +A V++ LPF I S +G+P +G ++ I+EI+ G+ S+++ DE+ ++
Sbjct: 190 TFMRAASVLKSLPFTIISMKDTEGIPCLGDKVKCIIEEIIEDGESSEVKAVLNDERYQSF 249
Query: 295 SLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSL--THSQRLGLKYFDDIKTRIPRHEVE 352
LF V+G+G T++K + G R+L + ++ +L T Q+ G Y++D+ + + R E E
Sbjct: 250 KLFTSVFGVGLKTSEKWFRMGFRSLSKIMSDKTLKFTKMQKAGFLYYEDLVSCVTRAEAE 309
Query: 353 QMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKE 412
+ L+++A LP+ + G +RRGK D+D +I P + L V L E
Sbjct: 310 AVGVLVKEAVWAFLPDAFVTMTGGFRRGKKIGHDVDFLITSPGSAEDEEQLLPKVINLWE 369
Query: 413 MK--FLREDLIFST 424
K L DL+ ST
Sbjct: 370 KKGLLLYYDLVEST 383
>sp|P25615|DPO4_YEAST DNA polymerase IV OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=POL4 PE=1 SV=4
Length = 582
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 86/347 (24%), Positives = 143/347 (41%), Gaps = 65/347 (18%)
Query: 65 DLEALLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLDPEGENIADRVLSQ 124
D++ L ++ + + K S I +W+++ +K +DL IK P I+D
Sbjct: 77 DVDEFLGKIEQSGIQCVKTSCIT-KWVQNDKFAFQK--DDL--IKFQPSIIVISD----- 126
Query: 125 IQGNGNTSSDGESSHRKKIKSSTEDVEHFQAESKGDVETNALSEAPNSPM--SSESLTNT 182
+ DG+SS K+ + ST DVE+ ++ N M +S+ L
Sbjct: 127 ------NADDGQSSTDKESEIST------------DVESERNDDSNNKDMIQASKPLKRL 168
Query: 183 LSTASASPDFSSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPV 242
L +TD + N N+ I +L Y GE R+ SY A
Sbjct: 169 LQGDKGRASL----VTDKTKYKN----NELIIGALKRLTKKYEIEGEKFRARSYRLAKQS 220
Query: 243 IEKLPFKIESADQV-KGLPGIGKSMQDHIQEIVTTGKLSKL-EHFEKDEKVRTISLFGEV 300
+E F + S ++ L IG S+ IQ I+ TG L L + ++K++ F
Sbjct: 221 MENCDFNVRSGEEAHTKLRNIGPSIAKKIQVILDTGVLPGLNDSVGLEDKLK---YFKNC 277
Query: 301 WGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQR-------------LGLKYFDDIKTRIP 347
+GIG A++ +L N +S + + G Y+DD ++
Sbjct: 278 YGIGSEIAKRW---------NLLNFESFCVAAKKDPEEFVSDWTILFGWSYYDDWLCKMS 328
Query: 348 RHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHP 394
R+E + +QKA + PE + GSY RG + CGD+D++ P
Sbjct: 329 RNECFTHLKKVQKALRGIDPECQVELQGSYNRGYSKCGDIDLLFFKP 375
>sp|Q9LL84|DNLI4_ARATH DNA ligase 4 OS=Arabidopsis thaliana GN=LIG4 PE=1 SV=1
Length = 1219
Score = 33.9 bits (76), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 83/193 (43%), Gaps = 35/193 (18%)
Query: 30 GVQNRRLQIWRQKLVQMGATVEEKLSKKVTH--VLAMDLEAL--------LQQVSKQHLA 79
G+ +RL + +++ G V L+ +H VLAM E L ++ K+ L
Sbjct: 825 GIMAKRLML---EVLMAGGKVSNNLAH-ASHLVVLAMAEEPLDFTLVSKSFSEMEKRLLL 880
Query: 80 RFKGSVIRYQWLEDSLRLGEKVSEDLYRIK------LDPEGENIADRVLSQIQGNGN--- 130
+ + V+ WLE+SL+ EK+ ED+Y ++ D E + ++ +++ G+
Sbjct: 881 KKRLHVVSSHWLEESLQREEKLCEDVYTLRPKYMEESDTEESDKSEHDTTEVASQGSAQT 940
Query: 131 ----------TSSDGESSHR--KKIKSSTEDVEHFQAESKGDVETNALSEAPNSPMSSES 178
TSS G S+ R K+ +SST ++ Q + E S S E
Sbjct: 941 KEPASSKIAITSSRGRSNTRAVKRGRSSTNSLQRVQRRRGKQPSKISGDETEESDASEEK 1000
Query: 179 LTNTLSTASASPD 191
++ LS + D
Sbjct: 1001 VSTRLSDIAEETD 1013
>sp|Q6NGD8|DPO4_CORDI DNA polymerase IV OS=Corynebacterium diphtheriae (strain ATCC
700971 / NCTC 13129 / Biotype gravis) GN=dinB PE=3 SV=1
Length = 451
Score = 33.5 bits (75), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 65/156 (41%), Gaps = 24/156 (15%)
Query: 258 GLP-----GIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY 312
GLP G GK + ++ + E +EK+ + + G +WG+GP T KL
Sbjct: 137 GLPASVGGGAGKQVAKICSDLAKPDGIYLCAASEHEEKMYPLPV-GRLWGVGPVTRTKLQ 195
Query: 313 EKGHRTLDDLKNEDSLTHSQRLGLKYFD-DIKTRIPRHEVEQMERLLQKAGE-EVLPEVI 370
+ G T+ DL R+ + D + T + R + RL Q + EV P I
Sbjct: 196 QLGVETIGDLA---------RMSEREIDISLGTTVGR----SLWRLAQGHDDREVAPRAI 242
Query: 371 ---ILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFL 403
I +Y + + +D I+ R+SH+ L
Sbjct: 243 AKQISVEHTYPKDLVTSRAVDTAIIRASRESHRRLL 278
>sp|Q6BHN9|SNX41_DEBHA Sorting nexin-41 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS
767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=SNX41 PE=3
SV=2
Length = 670
Score = 33.5 bits (75), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 171 NSPMSSESLTNTLSTASASPDF-SSHHITDPSLLYNPPDLNKNITEIFGKLINIYRALGE 229
N+ SS+ T T S + SPDF + +I D S L D+NK I F L N Y LG
Sbjct: 356 NTEASSQPSTGTTSPVNHSPDFIKNKYIIDNSCL---DDINKKIMANFIGLANDYTELGT 412
Query: 230 DRRSFS 235
SFS
Sbjct: 413 IFNSFS 418
>sp|Q7TT79|MCPH1_MOUSE Microcephalin OS=Mus musculus GN=Mcph1 PE=2 SV=1
Length = 822
Score = 33.5 bits (75), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 9/94 (9%)
Query: 17 GIFAGMRVFLVE----KGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQ 72
G F V VE KG +N +Q L MGATV + L+K+VTHV+ D Q
Sbjct: 9 GAFLKDVVAYVEVWSSKGTENYSRTFAKQ-LEDMGATVSKTLNKQVTHVIFKD----GYQ 63
Query: 73 VSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLY 106
+ + ++ W+E G V E L+
Sbjct: 64 STWDKAQKTGAKLVSVLWVEKCRMAGALVDESLF 97
>sp|Q9JYS8|DPO4_NEIMB DNA polymerase IV OS=Neisseria meningitidis serogroup B (strain
MC58) GN=dinB PE=3 SV=1
Length = 318
Score = 33.1 bits (74), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 297 FGEVWGIGPATAQKLYEKGHRTLDDLKNEDS---LTHSQRLGLKYFDDIKTRIPRHEVEQ 353
G++ G+G T +K+ G RT DL+ + L H R G + +D ++ R +
Sbjct: 179 LGKIPGVGKVTLKKMQSLGMRTAGDLRRFERGELLNHFGRYGYRLYDLVRGTDERPVKAE 238
Query: 354 MERLLQKAGEEVLPE 368
ER LQ + E LPE
Sbjct: 239 RER-LQISTEITLPE 252
>sp|P04152|UMUC_ECOLI Protein UmuC OS=Escherichia coli (strain K12) GN=umuC PE=1 SV=2
Length = 422
Score = 32.7 bits (73), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 276 TGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED 326
TG + L + E+ K+ + +VWGIG ++KL G +T+ DL + D
Sbjct: 160 TGGVVDLSNLERQRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTD 210
>sp|A1KUQ3|DPO4_NEIMF DNA polymerase IV OS=Neisseria meningitidis serogroup C / serotype
2a (strain ATCC 700532 / FAM18) GN=dinB PE=3 SV=1
Length = 352
Score = 32.7 bits (73), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 297 FGEVWGIGPATAQKLYEKGHRTLDDLKNEDS---LTHSQRLGLKYFDDIKTRIPRHEVEQ 353
G++ G+G T +K+ G RT DL+ + L H R G + +D ++ R +
Sbjct: 179 LGKIPGVGKVTLKKMQSLGMRTAGDLRRFERGELLNHFGRYGYRLYDLVRGTDERPVKAE 238
Query: 354 MERLLQKAGEEVLPE 368
ER LQ + E LPE
Sbjct: 239 RER-LQISTEITLPE 252
>sp|Q04350|POLB_CHPVE ORFB polyprotein OS=Cryphonectria hypovirus 1 (strain EP713) PE=1
SV=1
Length = 3165
Score = 32.7 bits (73), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 267 QDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIG--PATAQKLYEKGHRTLDDLKN 324
+DH++ I+T+GKL H D ++ + WGIG P + Y ++D +
Sbjct: 3041 EDHLERILTSGKLRYANHIPVDMAMQLLGNGHVTWGIGGVPTITRPRYPCDGMWVEDPSS 3100
Query: 325 EDSLTH 330
S H
Sbjct: 3101 RKSYAH 3106
>sp|Q8NNP4|DPO4_CORGL DNA polymerase IV OS=Corynebacterium glutamicum (strain ATCC 13032
/ DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025) GN=dinB
PE=3 SV=1
Length = 467
Score = 32.3 bits (72), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 9/68 (13%)
Query: 298 GEVWGIGPATAQKLYEKGHRTLDDL----KNEDSLTHSQRLGLKYFD-----DIKTRIPR 348
G +WG+GP T KL G T+ DL + E ++ +G+ ++ D + PR
Sbjct: 181 GALWGVGPVTGSKLASMGVETIGDLAALTQKEVEISLGATIGISLWNLARGIDDRPVEPR 240
Query: 349 HEVEQMER 356
E +Q+ +
Sbjct: 241 AEAKQISQ 248
>sp|A4QFK8|DPO4_CORGB DNA polymerase IV OS=Corynebacterium glutamicum (strain R) GN=dinB
PE=3 SV=1
Length = 467
Score = 32.0 bits (71), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 18/98 (18%)
Query: 298 GEVWGIGPATAQKLYEKGHRTLDDL----KNEDSLTHSQRLGLKYFD-----DIKTRIPR 348
G +WG+GP T KL G T+ DL + E ++ +G+ ++ D + PR
Sbjct: 181 GALWGVGPVTGSKLASMGVETIGDLAALTQKEVEISLGATIGISLWNLARGIDDRPVEPR 240
Query: 349 HEVEQMER-------LLQKAGEEVLPEVIILCGGSYRR 379
E +Q+ + LL + ++V +I G++RR
Sbjct: 241 AEAKQISQEHTYEKDLLTR--QQVDAAIIRSAEGAHRR 276
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.133 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 174,893,076
Number of Sequences: 539616
Number of extensions: 7502548
Number of successful extensions: 27293
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 66
Number of HSP's that attempted gapping in prelim test: 27190
Number of HSP's gapped (non-prelim): 136
length of query: 464
length of database: 191,569,459
effective HSP length: 121
effective length of query: 343
effective length of database: 126,275,923
effective search space: 43312641589
effective search space used: 43312641589
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)