Query 012388
Match_columns 464
No_of_seqs 342 out of 971
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 08:28:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012388.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012388hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ihm_A POL MU, DNA polymerase 100.0 2.5E-62 8.6E-67 501.7 26.3 257 207-463 14-294 (360)
2 1jms_A Terminal deoxynucleotid 100.0 1.3E-61 4.4E-66 499.4 27.8 256 207-463 33-315 (381)
3 2bcq_A DNA polymerase lambda; 100.0 7.1E-62 2.4E-66 494.0 24.0 255 202-463 5-260 (335)
4 2fmp_A DNA polymerase beta; nu 100.0 2E-59 6.9E-64 476.2 25.5 245 209-463 11-266 (335)
5 3b0x_A DNA polymerase beta fam 100.0 1.3E-43 4.4E-48 384.0 22.1 233 208-463 1-253 (575)
6 2w9m_A Polymerase X; SAXS, DNA 100.0 5.2E-41 1.8E-45 363.8 21.4 222 207-463 7-244 (578)
7 2dun_A POL MU, DNA polymerase 99.9 3.1E-26 1.1E-30 200.2 9.9 98 12-109 4-107 (133)
8 2coe_A Deoxynucleotidyltransfe 99.9 7.6E-24 2.6E-28 183.8 9.9 102 10-111 12-117 (120)
9 2jw5_A DNA polymerase lambda; 99.8 2.9E-21 1E-25 164.8 2.0 99 12-111 5-106 (106)
10 1jaj_A DNA polymerase beta-lik 99.7 6.7E-19 2.3E-23 162.5 -3.1 102 334-463 6-110 (174)
11 1wf6_A Similar to S.pombe -RAD 99.6 1.7E-15 5.8E-20 133.8 10.3 95 12-110 34-128 (132)
12 3pa6_A Microcephalin; BRCT dom 99.6 1.6E-15 5.6E-20 129.3 9.6 92 17-112 6-99 (107)
13 3ii6_X DNA ligase 4; XRCC4, NH 99.5 1.5E-14 5.2E-19 141.9 9.6 96 13-108 159-263 (263)
14 4id3_A DNA repair protein REV1 99.5 8.1E-14 2.8E-18 114.3 8.2 88 13-108 2-91 (92)
15 2ebw_A DNA repair protein REV1 99.4 2.8E-13 9.6E-18 112.6 8.1 91 11-109 5-96 (97)
16 3l3e_A DNA topoisomerase 2-bin 99.4 2E-13 7E-18 115.8 6.2 96 13-111 10-105 (107)
17 2d8m_A DNA-repair protein XRCC 99.4 9.9E-13 3.4E-17 115.5 8.1 95 12-112 16-110 (129)
18 2cou_A ECT2 protein; BRCT doma 99.3 5.5E-13 1.9E-17 113.8 4.2 88 16-109 10-97 (109)
19 3l46_A Protein ECT2; alternati 99.3 2.7E-12 9.1E-17 110.2 5.2 88 17-110 20-107 (112)
20 3pc6_A DNA repair protein XRCC 99.2 2.4E-11 8.3E-16 102.8 8.9 89 17-109 6-95 (104)
21 1z56_C DNA ligase IV; DNA repa 99.2 9.7E-12 3.3E-16 121.4 3.3 96 12-108 154-261 (264)
22 2ep8_A Pescadillo homolog 1; A 99.1 1.3E-10 4.4E-15 97.8 7.7 84 12-107 6-100 (100)
23 2kp7_A Crossover junction endo 99.1 1.7E-10 5.7E-15 94.5 7.7 68 208-276 13-80 (87)
24 2nte_A BARD-1, BRCA1-associate 99.0 1.3E-10 4.5E-15 109.6 5.4 81 26-109 5-87 (210)
25 1t15_A Breast cancer type 1 su 99.0 3.8E-10 1.3E-14 106.0 5.6 84 21-109 4-92 (214)
26 1l0b_A BRCA1; TANDEM-BRCT, thr 98.9 1.1E-09 3.8E-14 104.2 7.4 90 18-109 4-95 (229)
27 3ef0_A RNA polymerase II subun 98.9 1.2E-09 4E-14 112.1 7.3 89 16-108 280-371 (372)
28 3olc_X DNA topoisomerase 2-bin 98.9 2.8E-09 9.4E-14 106.3 8.0 90 16-111 197-287 (298)
29 3pc7_A DNA ligase 3; DNA repai 98.8 2.5E-09 8.5E-14 87.6 5.0 73 16-103 14-87 (88)
30 3ef1_A RNA polymerase II subun 98.7 9E-09 3.1E-13 107.3 6.3 88 17-108 351-441 (442)
31 3ii6_X DNA ligase 4; XRCC4, NH 98.7 1.6E-08 5.6E-13 98.9 7.6 92 12-109 4-96 (263)
32 3u3z_A Microcephalin; DNA repa 98.7 1.4E-08 4.9E-13 95.3 5.5 81 26-109 14-95 (199)
33 3sqd_A PAX-interacting protein 98.6 2.2E-08 7.4E-13 95.5 5.9 86 18-109 13-98 (219)
34 1kzy_C Tumor suppressor P53-bi 98.6 4.6E-08 1.6E-12 95.5 7.8 96 11-109 8-136 (259)
35 3al2_A DNA topoisomerase 2-bin 98.6 5.3E-08 1.8E-12 93.8 7.6 85 20-109 8-94 (235)
36 1vq8_Y 50S ribosomal protein L 98.6 2.3E-09 7.8E-14 103.6 -3.9 120 295-418 15-166 (241)
37 2etx_A Mediator of DNA damage 98.5 6.6E-08 2.3E-12 91.2 6.1 83 18-109 9-91 (209)
38 3olc_X DNA topoisomerase 2-bin 98.5 2.7E-07 9.2E-12 91.9 8.4 85 16-106 103-187 (298)
39 1l0b_A BRCA1; TANDEM-BRCT, thr 98.5 2.4E-07 8.1E-12 87.9 7.4 92 16-109 115-213 (229)
40 2vxb_A DNA repair protein RHP9 98.4 3.4E-07 1.2E-11 88.4 6.5 90 18-110 2-118 (241)
41 1t15_A Breast cancer type 1 su 98.3 4.4E-07 1.5E-11 84.9 4.9 94 15-109 112-211 (214)
42 1kzy_C Tumor suppressor P53-bi 98.3 5.5E-07 1.9E-11 87.8 5.7 87 16-106 153-249 (259)
43 3l41_A BRCT-containing protein 98.2 5.6E-07 1.9E-11 85.8 3.8 81 20-109 7-87 (220)
44 1z56_C DNA ligase IV; DNA repa 98.2 1.7E-07 5.7E-12 91.3 -0.6 89 16-109 3-101 (264)
45 3u3z_A Microcephalin; DNA repa 98.1 2.1E-06 7E-11 80.5 4.5 83 15-109 116-198 (199)
46 2vxb_A DNA repair protein RHP9 98.0 4.9E-06 1.7E-10 80.3 6.5 80 16-103 149-241 (241)
47 2etx_A Mediator of DNA damage 97.9 1.3E-05 4.4E-10 75.4 6.9 89 17-111 114-204 (209)
48 2nte_A BARD-1, BRCA1-associate 97.8 1.4E-05 4.9E-10 74.8 4.1 85 16-104 102-209 (210)
49 2edu_A Kinesin-like protein KI 97.7 2.5E-05 8.6E-10 64.9 4.3 57 252-322 38-95 (98)
50 2k6g_A Replication factor C su 97.6 0.00026 8.8E-09 60.1 9.5 81 14-98 28-108 (109)
51 2cok_A Poly [ADP-ribose] polym 97.6 0.00013 4.4E-09 62.4 6.7 79 16-97 8-86 (113)
52 1l7b_A DNA ligase; BRCT, autos 97.5 0.0001 3.6E-09 60.6 5.7 78 14-97 3-80 (92)
53 3al2_A DNA topoisomerase 2-bin 97.4 0.00015 5.1E-09 69.6 5.6 91 16-109 133-229 (235)
54 2ebu_A Replication factor C su 97.3 0.00067 2.3E-08 57.8 8.0 81 13-97 17-97 (112)
55 2duy_A Competence protein come 97.3 6.6E-05 2.3E-09 59.1 1.4 46 253-313 26-71 (75)
56 3arc_U Photosystem II 12 kDa e 97.0 0.00065 2.2E-08 56.4 4.8 47 252-313 24-70 (97)
57 1s5l_U Photosystem II 12 kDa e 96.9 0.00088 3E-08 58.5 5.2 46 252-312 61-106 (134)
58 1x2i_A HEF helicase/nuclease; 96.6 0.0027 9.2E-08 49.1 5.5 51 254-313 14-64 (75)
59 2l42_A DNA-binding protein RAP 96.5 0.0024 8.3E-08 52.6 4.7 85 15-111 8-97 (106)
60 1ixr_A Holliday junction DNA h 96.4 0.0019 6.6E-08 60.0 3.9 52 255-313 73-125 (191)
61 2owo_A DNA ligase; protein-DNA 96.4 0.0075 2.6E-07 66.0 8.9 87 254-350 480-568 (671)
62 3sqd_A PAX-interacting protein 96.3 0.0098 3.3E-07 56.2 8.5 85 16-108 120-218 (219)
63 2duy_A Competence protein come 96.3 0.0029 9.8E-08 49.5 3.9 47 293-345 25-72 (75)
64 1kft_A UVRC, excinuclease ABC 96.3 0.0026 9E-08 50.1 3.5 51 254-313 24-74 (78)
65 1dgs_A DNA ligase; AMP complex 96.3 0.0042 1.4E-07 67.9 6.2 84 254-347 475-560 (667)
66 3arc_U Photosystem II 12 kDa e 96.2 0.0016 5.5E-08 54.0 2.2 49 293-347 24-73 (97)
67 2ztd_A Holliday junction ATP-d 96.2 0.0029 9.9E-08 59.7 3.9 53 254-313 88-141 (212)
68 2i5h_A Hypothetical protein AF 96.2 0.0037 1.3E-07 58.1 4.4 44 251-305 129-172 (205)
69 1z00_A DNA excision repair pro 96.1 0.0062 2.1E-07 49.2 5.1 51 254-313 19-69 (89)
70 1cuk_A RUVA protein; DNA repai 96.1 0.0027 9.3E-08 59.5 3.2 52 255-313 74-126 (203)
71 2a1j_B DNA excision repair pro 96.0 0.0071 2.4E-07 49.1 4.9 51 254-313 32-82 (91)
72 2a1j_B DNA excision repair pro 95.6 0.0076 2.6E-07 48.9 3.4 54 288-342 25-80 (91)
73 1z00_A DNA excision repair pro 95.5 0.012 4E-07 47.5 4.1 52 290-342 14-67 (89)
74 3bqs_A Uncharacterized protein 95.4 0.0097 3.3E-07 48.9 3.3 31 296-326 5-35 (93)
75 1x2i_A HEF helicase/nuclease; 95.0 0.011 3.9E-07 45.5 2.5 50 293-343 12-63 (75)
76 1kft_A UVRC, excinuclease ABC 94.8 0.0061 2.1E-07 48.0 0.5 50 293-343 22-73 (78)
77 1s5l_U Photosystem II 12 kDa e 94.8 0.03 1E-06 48.8 4.9 41 293-339 61-102 (134)
78 2bgw_A XPF endonuclease; hydro 94.8 0.028 9.5E-07 52.8 5.1 50 255-313 163-212 (219)
79 4b21_A Probable DNA-3-methylad 94.4 0.06 2E-06 51.3 6.5 62 254-316 107-171 (232)
80 2i5h_A Hypothetical protein AF 94.3 0.038 1.3E-06 51.3 4.7 52 293-344 130-187 (205)
81 4glx_A DNA ligase; inhibitor, 94.3 0.056 1.9E-06 58.2 6.6 87 254-350 480-568 (586)
82 2a1j_A DNA repair endonuclease 94.2 0.044 1.5E-06 41.5 4.1 30 295-325 4-33 (63)
83 3mab_A Uncharacterized protein 94.2 0.033 1.1E-06 45.7 3.6 31 296-326 5-35 (93)
84 3qbz_A DDK kinase regulatory s 94.1 0.035 1.2E-06 49.6 3.9 48 17-64 57-115 (160)
85 1u9l_A Transcription elongatio 94.1 0.032 1.1E-06 43.3 3.2 53 292-344 3-57 (70)
86 3s6i_A DNA-3-methyladenine gly 94.1 0.076 2.6E-06 50.4 6.4 55 261-315 102-159 (228)
87 2w9m_A Polymerase X; SAXS, DNA 94.0 0.033 1.1E-06 60.0 4.3 54 252-312 95-148 (578)
88 3oq0_A DBF4, protein DNA52; DD 93.9 0.081 2.8E-06 46.9 5.7 46 20-65 23-78 (151)
89 3l41_A BRCT-containing protein 93.9 0.1 3.6E-06 49.2 7.0 85 16-100 111-206 (220)
90 3nyb_A Poly(A) RNA polymerase 93.6 0.19 6.6E-06 50.0 8.6 65 354-418 45-111 (323)
91 1z00_B DNA repair endonuclease 93.5 0.078 2.7E-06 42.6 4.6 35 290-325 13-47 (84)
92 1vq8_Y 50S ribosomal protein L 93.4 0.014 4.8E-07 56.1 0.0 54 253-314 14-67 (241)
93 2ztd_A Holliday junction ATP-d 93.4 0.025 8.5E-07 53.3 1.7 52 291-342 84-139 (212)
94 3b0x_A DNA polymerase beta fam 93.4 0.047 1.6E-06 58.7 4.0 64 252-322 91-154 (575)
95 3oq4_A DBF4, protein DNA52; DD 93.3 0.16 5.3E-06 44.2 6.4 49 17-65 3-61 (134)
96 1ixr_A Holliday junction DNA h 93.0 0.033 1.1E-06 51.7 1.7 51 292-342 69-123 (191)
97 1wcn_A Transcription elongatio 92.6 0.064 2.2E-06 41.6 2.6 29 297-325 9-37 (70)
98 1cuk_A RUVA protein; DNA repai 92.4 0.041 1.4E-06 51.5 1.7 52 291-342 69-124 (203)
99 4gfj_A Topoisomerase V; helix- 92.4 0.1 3.4E-06 53.5 4.4 48 294-342 467-524 (685)
100 4dez_A POL IV 1, DNA polymeras 92.3 0.1 3.4E-06 52.5 4.5 40 297-336 180-219 (356)
101 2owo_A DNA ligase; protein-DNA 92.1 0.027 9.1E-07 61.6 -0.0 49 298-346 449-500 (671)
102 1dgs_A DNA ligase; AMP complex 91.9 0.035 1.2E-06 60.7 0.6 49 299-347 445-496 (667)
103 4e8f_A Poly(A) RNA polymerase 91.2 0.33 1.1E-05 49.9 7.0 60 354-413 68-128 (405)
104 3osn_A DNA polymerase IOTA; ho 91.2 0.16 5.3E-06 52.5 4.5 41 297-337 236-276 (420)
105 3fhg_A Mjogg, N-glycosylase/DN 91.0 1.3 4.5E-05 41.1 10.3 124 238-365 50-186 (207)
106 1b22_A DNA repair protein RAD5 90.9 0.078 2.7E-06 45.1 1.6 49 293-342 24-74 (114)
107 2yg9_A DNA-3-methyladenine gly 90.7 0.39 1.4E-05 45.3 6.5 53 261-314 110-165 (225)
108 1jx4_A DNA polymerase IV (fami 90.7 0.13 4.5E-06 51.6 3.3 30 297-326 180-209 (352)
109 1ylq_A Putative nucleotidyltra 90.6 0.43 1.5E-05 38.7 5.8 31 365-395 14-46 (96)
110 3sgi_A DNA ligase; HET: DNA AM 90.5 0.049 1.7E-06 58.9 0.0 89 254-352 491-587 (615)
111 3gqc_A DNA repair protein REV1 90.4 0.18 6.3E-06 53.3 4.3 40 297-336 317-356 (504)
112 3i0w_A 8-oxoguanine-DNA-glycos 90.3 0.62 2.1E-05 45.6 7.7 58 254-314 170-230 (290)
113 2a1j_A DNA repair endonuclease 90.0 0.33 1.1E-05 36.6 4.3 49 254-313 4-53 (63)
114 3c65_A Uvrabc system protein C 90.0 0.048 1.6E-06 51.8 -0.6 50 254-313 173-222 (226)
115 1no5_A Hypothetical protein HI 89.9 1.1 3.8E-05 37.3 8.0 63 346-413 9-72 (114)
116 1z00_B DNA repair endonuclease 89.8 0.2 7E-06 40.1 3.1 50 254-314 18-68 (84)
117 2va8_A SSO2462, SKI2-type heli 89.7 0.23 7.9E-06 54.1 4.5 37 286-323 649-685 (715)
118 3t7k_A RTT107, regulator of TY 89.5 0.26 9E-06 47.3 4.1 67 40-109 40-119 (256)
119 3bq0_A POL IV, DBH, DNA polyme 89.3 0.16 5.6E-06 50.9 2.7 30 297-326 181-210 (354)
120 2edu_A Kinesin-like protein KI 89.0 0.29 1E-05 40.0 3.6 43 294-342 39-86 (98)
121 1im4_A DBH; DNA polymerase PAL 88.9 0.15 5.2E-06 48.0 2.0 29 297-325 186-214 (221)
122 3n0u_A Probable N-glycosylase/ 88.7 0.23 7.7E-06 46.9 3.0 93 264-364 100-197 (219)
123 2jhn_A ALKA, 3-methyladenine D 88.4 0.47 1.6E-05 46.6 5.3 59 255-317 174-232 (295)
124 2zj8_A DNA helicase, putative 87.9 0.15 5.3E-06 55.7 1.5 53 289-342 641-695 (720)
125 4fh3_A Poly(A) RNA polymerase 87.6 1.1 3.8E-05 44.5 7.5 61 355-415 41-102 (349)
126 2aq4_A DNA repair protein REV1 87.5 0.32 1.1E-05 50.3 3.5 29 297-325 243-273 (434)
127 4f4y_A POL IV, DNA polymerase 87.3 0.18 6.2E-06 50.9 1.6 30 297-326 181-210 (362)
128 2bgw_A XPF endonuclease; hydro 87.1 0.35 1.2E-05 45.1 3.3 49 293-342 160-210 (219)
129 2h56_A DNA-3-methyladenine gly 86.8 0.91 3.1E-05 43.0 6.0 60 254-315 96-158 (233)
130 3vdp_A Recombination protein R 86.0 1.2 4.1E-05 41.7 6.2 21 291-311 22-42 (212)
131 3bzc_A TEX; helix-turn-helix, 85.8 0.71 2.4E-05 51.4 5.3 51 252-314 506-557 (785)
132 4glx_A DNA ligase; inhibitor, 85.7 0.15 5.1E-06 54.9 -0.1 49 298-346 449-500 (586)
133 3im1_A Protein SNU246, PRE-mRN 85.6 2.3 7.8E-05 42.0 8.5 61 297-372 159-219 (328)
134 2p6r_A Afuhel308 helicase; pro 85.0 0.69 2.4E-05 50.3 4.8 41 285-326 623-663 (702)
135 3huf_A DNA repair and telomere 84.4 0.46 1.6E-05 47.2 2.7 58 36-97 126-187 (325)
136 3c1y_A DNA integrity scanning 84.0 0.49 1.7E-05 48.1 2.8 52 291-343 311-364 (377)
137 2nrt_A Uvrabc system protein C 83.9 0.91 3.1E-05 42.8 4.4 31 294-325 167-197 (220)
138 3c65_A Uvrabc system protein C 83.8 0.21 7.2E-06 47.4 0.0 49 294-344 172-222 (226)
139 3pzp_A DNA polymerase kappa; D 83.5 0.72 2.5E-05 48.9 4.0 29 297-325 340-368 (517)
140 1t94_A Polymerase (DNA directe 82.9 0.87 3E-05 47.4 4.2 40 297-337 284-323 (459)
141 1wcn_A Transcription elongatio 82.7 1.2 4E-05 34.3 3.9 52 254-313 7-58 (70)
142 1wot_A Putative minimal nucleo 82.5 2.1 7.3E-05 34.6 5.7 58 353-412 11-69 (98)
143 2rff_A Putative nucleotidyltra 82.3 3 0.0001 34.7 6.6 42 354-396 19-62 (111)
144 4ecq_A DNA polymerase ETA; tra 81.9 0.71 2.4E-05 47.8 3.1 39 297-335 255-294 (435)
145 2q0z_X Protein Pro2281; SEC63, 81.0 3 0.0001 41.4 7.3 28 297-324 163-190 (339)
146 2nrt_A Uvrabc system protein C 80.8 1 3.4E-05 42.5 3.4 49 254-313 168-217 (220)
147 1q79_A Poly(A) polymerase alph 80.7 1.8 6.2E-05 45.8 5.7 53 366-418 92-145 (514)
148 1vdd_A Recombination protein R 80.5 0.87 3E-05 43.0 2.8 22 291-312 8-29 (228)
149 1exn_A 5'-exonuclease, 5'-nucl 79.8 0.88 3E-05 44.7 2.7 26 299-325 207-232 (290)
150 1kea_A Possible G-T mismatches 79.1 1.3 4.3E-05 41.6 3.6 23 292-314 112-134 (221)
151 3n5n_X A/G-specific adenine DN 78.8 4.3 0.00015 39.7 7.3 21 294-314 127-148 (287)
152 2hhp_A Poly(A) polymerase; tem 78.6 3.3 0.00011 44.0 7.0 51 368-418 81-132 (530)
153 3q8k_A Flap endonuclease 1; he 78.0 1 3.6E-05 45.1 2.7 26 299-325 236-261 (341)
154 2ikf_A RNA uridylyl transferas 77.5 2.1 7.1E-05 42.9 4.8 61 354-418 56-133 (353)
155 3bqs_A Uncharacterized protein 77.3 2 6.9E-05 34.9 3.8 56 252-313 2-57 (93)
156 2b4v_A RNA editing complex pro 77.2 4 0.00014 42.6 7.0 87 330-416 16-114 (468)
157 3fhf_A Mjogg, N-glycosylase/DN 76.7 2.5 8.4E-05 39.6 4.8 94 265-365 95-193 (214)
158 2xhi_A N-glycosylase/DNA lyase 76.7 2.9 9.9E-05 42.2 5.6 53 261-314 215-272 (360)
159 1kg2_A A/G-specific adenine gl 76.4 1.5 5.1E-05 41.2 3.2 22 293-314 107-128 (225)
160 2abk_A Endonuclease III; DNA-r 75.3 1.7 5.8E-05 40.3 3.2 23 292-314 106-128 (211)
161 3sgi_A DNA ligase; HET: DNA AM 73.1 0.71 2.4E-05 49.9 0.0 63 299-361 461-532 (615)
162 3qe9_Y Exonuclease 1; exonucle 73.0 1.9 6.6E-05 43.3 3.2 27 298-324 228-255 (352)
163 3psf_A Transcription elongatio 72.5 2.8 9.4E-05 48.0 4.6 47 254-312 717-765 (1030)
164 4f92_B U5 small nuclear ribonu 72.2 4.4 0.00015 49.0 6.5 29 297-325 1559-1587(1724)
165 2pbe_A AAD6, aminoglycoside 6- 72.1 9.3 0.00032 37.3 7.8 94 354-462 10-112 (294)
166 1pu6_A 3-methyladenine DNA gly 71.9 1.8 6.3E-05 40.4 2.6 24 292-315 118-141 (218)
167 2bcq_A DNA polymerase lambda; 71.9 0.93 3.2E-05 45.4 0.5 51 294-344 56-114 (335)
168 4gns_A Chitin biosynthesis pro 71.6 1.9 6.4E-05 39.1 2.4 71 39-111 183-256 (290)
169 1rxw_A Flap structure-specific 70.5 2.1 7E-05 42.6 2.7 26 299-325 239-264 (336)
170 1a76_A Flap endonuclease-1 pro 70.3 2.2 7.6E-05 42.2 2.9 25 299-325 229-254 (326)
171 2fmp_A DNA polymerase beta; nu 69.9 1.2 4.2E-05 44.5 0.9 49 296-344 58-116 (335)
172 1jx4_A DNA polymerase IV (fami 69.7 5.4 0.00019 39.6 5.6 53 256-318 180-234 (352)
173 1kg2_A A/G-specific adenine gl 69.5 6.4 0.00022 36.7 5.8 66 232-304 85-152 (225)
174 1pzn_A RAD51, DNA repair and r 68.9 1.5 5.1E-05 43.8 1.3 29 296-324 36-64 (349)
175 1ci4_A Protein (barrier-TO-aut 68.8 4 0.00014 32.9 3.5 28 297-324 20-47 (89)
176 2ihm_A POL MU, DNA polymerase 68.2 1.6 5.5E-05 44.1 1.3 47 297-343 63-119 (360)
177 2fcl_A Hypothetical protein TM 67.9 8.2 0.00028 34.5 5.9 70 367-455 32-105 (169)
178 3psi_A Transcription elongatio 67.5 4 0.00014 47.5 4.6 47 254-312 714-762 (1219)
179 1z3e_B DNA-directed RNA polyme 67.2 6.2 0.00021 30.6 4.2 23 254-276 41-63 (73)
180 3mab_A Uncharacterized protein 65.7 2.7 9.3E-05 34.2 2.0 42 252-297 2-43 (93)
181 1b22_A DNA repair protein RAD5 65.6 3.1 0.00011 35.1 2.4 64 252-324 24-94 (114)
182 3bzc_A TEX; helix-turn-helix, 65.6 3.7 0.00013 45.7 3.7 45 293-343 506-555 (785)
183 1kea_A Possible G-T mismatches 65.3 6.6 0.00022 36.6 4.9 42 232-273 91-134 (221)
184 3ory_A Flap endonuclease 1; hy 65.3 2 6.9E-05 43.4 1.4 24 299-324 255-279 (363)
185 4e9f_A Methyl-CPG-binding doma 64.6 2.6 9E-05 37.6 1.9 23 252-274 102-124 (161)
186 3psf_A Transcription elongatio 64.2 2.8 9.7E-05 47.9 2.5 44 293-342 715-764 (1030)
187 1ul1_X Flap endonuclease-1; pr 63.7 3.5 0.00012 41.8 2.8 32 293-325 224-261 (379)
188 3vdp_A Recombination protein R 63.5 3.4 0.00012 38.6 2.5 32 254-285 26-57 (212)
189 3n5n_X A/G-specific adenine DN 62.9 6.2 0.00021 38.5 4.3 66 232-304 104-172 (287)
190 1orn_A Endonuclease III; DNA r 62.3 5.4 0.00018 37.4 3.7 22 293-314 111-132 (226)
191 3fsp_A A/G-specific adenine gl 61.7 7 0.00024 39.2 4.6 66 232-304 94-161 (369)
192 3r8n_M 30S ribosomal protein S 61.2 6.1 0.00021 33.3 3.4 25 293-317 14-39 (114)
193 1orn_A Endonuclease III; DNA r 61.1 10 0.00034 35.5 5.3 43 232-274 89-133 (226)
194 1b43_A Protein (FEN-1); nuclea 61.0 4.1 0.00014 40.5 2.7 26 299-325 241-266 (340)
195 1mpg_A ALKA, 3-methyladenine D 60.9 8.4 0.00029 37.2 4.9 25 290-314 202-226 (282)
196 4gfj_A Topoisomerase V; helix- 60.7 6.2 0.00021 40.6 3.9 56 256-323 470-525 (685)
197 1kny_A Kntase, kanamycin nucle 60.6 8.1 0.00028 36.6 4.6 51 346-396 7-60 (253)
198 1r89_A TRNA nucleotidyltransfe 60.0 9 0.00031 39.6 5.1 30 369-398 40-71 (437)
199 4dez_A POL IV 1, DNA polymeras 59.4 12 0.00042 37.1 5.9 53 256-318 180-234 (356)
200 3k4g_A DNA-directed RNA polyme 59.2 11 0.00036 30.2 4.3 23 254-276 44-66 (86)
201 4ebj_A Aminoglycoside nucleoti 59.1 10 0.00035 36.4 4.9 73 347-420 18-95 (272)
202 3u5c_S 40S ribosomal protein S 58.2 5.5 0.00019 35.1 2.7 25 293-317 28-53 (146)
203 3psi_A Transcription elongatio 58.1 4.1 0.00014 47.4 2.4 45 293-343 712-762 (1219)
204 2izo_A FEN1, flap structure-sp 58.0 3.8 0.00013 40.9 1.9 26 299-325 238-263 (346)
205 1px5_A 2'-5'-oligoadenylate sy 58.0 11 0.00037 37.4 5.3 26 370-395 56-83 (349)
206 1jms_A Terminal deoxynucleotid 57.8 3.2 0.00011 42.2 1.3 46 297-342 82-137 (381)
207 3c1y_A DNA integrity scanning 57.8 3.4 0.00012 41.9 1.5 17 296-312 348-364 (377)
208 1gm5_A RECG; helicase, replica 57.0 3.6 0.00012 45.7 1.6 27 297-323 117-143 (780)
209 3osn_A DNA polymerase IOTA; ho 56.7 11 0.00038 38.6 5.2 53 256-318 236-290 (420)
210 3gfk_B DNA-directed RNA polyme 56.7 11 0.00038 29.6 4.0 23 254-276 48-70 (79)
211 3mfi_A DNA polymerase ETA; DNA 56.1 3.1 0.00011 44.0 0.9 27 297-323 309-339 (520)
212 2abk_A Endonuclease III; DNA-r 55.8 11 0.00037 34.8 4.5 57 218-274 70-129 (211)
213 3fhg_A Mjogg, N-glycosylase/DN 55.8 5.1 0.00018 37.0 2.3 22 252-273 115-136 (207)
214 2i1q_A DNA repair and recombin 54.5 5.8 0.0002 38.5 2.5 29 297-325 5-33 (322)
215 1z3e_B DNA-directed RNA polyme 54.4 4.7 0.00016 31.2 1.5 44 301-344 14-59 (73)
216 3jz0_A Lincosamide nucleotidyl 54.1 32 0.0011 33.4 7.7 92 351-462 25-118 (287)
217 3iz6_M 40S ribosomal protein S 54.0 6.7 0.00023 34.8 2.6 26 292-317 25-51 (152)
218 1vdd_A Recombination protein R 53.5 5.9 0.0002 37.3 2.2 131 254-390 12-181 (228)
219 3j20_O 30S ribosomal protein S 53.4 6.9 0.00024 34.5 2.6 25 293-317 21-46 (148)
220 3gfk_B DNA-directed RNA polyme 51.9 5.7 0.0002 31.3 1.6 44 301-344 21-66 (79)
221 3gqc_A DNA repair protein REV1 51.9 17 0.00058 38.2 5.7 53 256-318 317-371 (504)
222 3i0w_A 8-oxoguanine-DNA-glycos 51.8 16 0.00055 35.4 5.2 46 228-273 176-230 (290)
223 3bq0_A POL IV, DBH, DNA polyme 51.0 14 0.00049 36.6 4.8 53 256-318 181-235 (354)
224 2xhi_A N-glycosylase/DNA lyase 50.9 16 0.00055 36.7 5.1 50 224-273 211-272 (360)
225 2xzm_M RPS18E; ribosome, trans 50.8 8.1 0.00028 34.3 2.6 25 293-317 28-53 (155)
226 3k4g_A DNA-directed RNA polyme 50.7 6.4 0.00022 31.5 1.7 42 302-343 18-61 (86)
227 3ci0_K Pseudopilin GSPK; gener 50.5 3.8 0.00013 40.1 0.4 76 248-325 152-235 (298)
228 1pu6_A 3-methyladenine DNA gly 49.9 13 0.00046 34.4 4.1 43 232-274 93-141 (218)
229 2zc2_A DNAD-like replication p 49.8 8.7 0.0003 29.5 2.4 19 305-323 59-77 (78)
230 2ziu_A MUS81 protein; helix-ha 49.6 11 0.00039 36.6 3.7 59 254-314 237-303 (311)
231 3hj4_A Minor editosome-associa 49.5 23 0.00079 35.9 6.0 39 358-396 35-74 (384)
232 3fsp_A A/G-specific adenine gl 49.1 15 0.00052 36.6 4.7 22 293-314 116-137 (369)
233 2vqe_M 30S ribosomal protein S 48.9 5.2 0.00018 34.4 1.0 25 293-317 15-40 (126)
234 4f4y_A POL IV, DNA polymerase 47.8 15 0.0005 36.8 4.3 53 256-318 181-235 (362)
235 1mpg_A ALKA, 3-methyladenine D 47.3 19 0.00065 34.6 4.9 52 226-278 171-230 (282)
236 4b21_A Probable DNA-3-methylad 46.9 15 0.00053 34.4 4.1 42 232-273 118-169 (232)
237 2h56_A DNA-3-methyladenine gly 46.8 11 0.00039 35.3 3.1 21 253-273 137-157 (233)
238 2aq4_A DNA repair protein REV1 46.4 17 0.00059 37.2 4.6 56 256-319 243-301 (434)
239 1coo_A RNA polymerase alpha su 43.7 20 0.00069 29.3 3.7 23 254-276 56-78 (98)
240 4e9f_A Methyl-CPG-binding doma 43.0 10 0.00035 33.7 2.0 19 294-312 103-121 (161)
241 3pkr_A FLIG, flagellar motor s 42.9 92 0.0031 30.1 8.9 87 236-323 87-188 (279)
242 3pq1_A Poly(A) RNA polymerase; 40.1 86 0.0029 32.5 8.7 41 355-395 159-200 (464)
243 2yg9_A DNA-3-methyladenine gly 39.9 27 0.00094 32.5 4.6 42 232-273 115-165 (225)
244 3fhf_A Mjogg, N-glycosylase/DN 39.5 21 0.00072 33.2 3.7 21 253-273 123-144 (214)
245 1t94_A Polymerase (DNA directe 38.5 35 0.0012 35.1 5.5 52 256-318 284-337 (459)
246 3s6i_A DNA-3-methyladenine gly 37.7 27 0.00092 32.6 4.1 42 232-273 107-158 (228)
247 3e1s_A Exodeoxyribonuclease V, 37.0 7.2 0.00025 41.6 0.0 45 299-343 15-61 (574)
248 2csb_A Topoisomerase V, TOP61; 36.8 45 0.0016 32.2 5.5 83 270-354 388-484 (519)
249 3im1_A Protein SNU246, PRE-mRN 36.4 2.5E+02 0.0086 27.0 11.2 52 254-313 157-208 (328)
250 2va8_A SSO2462, SKI2-type heli 35.7 1.9E+02 0.0065 30.9 11.1 49 254-313 657-705 (715)
251 2z43_A DNA repair and recombin 35.3 7.9 0.00027 37.8 0.0 29 297-325 14-42 (324)
252 3k7d_A Glutamate-ammonia-ligas 34.9 67 0.0023 33.6 7.0 28 368-395 234-262 (498)
253 2i5u_A DNAD domain protein; st 32.0 20 0.00069 27.9 1.9 19 305-323 64-82 (83)
254 4ecq_A DNA polymerase ETA; tra 31.8 56 0.0019 33.4 5.7 54 256-318 255-310 (435)
255 3mfi_A DNA polymerase ETA; DNA 31.1 19 0.00063 38.0 2.0 19 256-274 309-327 (520)
256 3n0u_A Probable N-glycosylase/ 31.0 17 0.00059 33.9 1.5 21 253-273 128-149 (219)
257 3e1s_A Exodeoxyribonuclease V, 30.6 10 0.00034 40.5 -0.2 50 261-318 18-68 (574)
258 1ci4_A Protein (barrier-TO-aut 29.5 1.2E+02 0.0041 24.3 6.0 57 254-313 18-79 (89)
259 2zix_A Crossover junction endo 28.0 8.6 0.00029 37.5 -1.2 59 254-314 233-299 (307)
260 3bbn_M Ribosomal protein S13; 27.9 5.9 0.0002 34.8 -2.1 21 296-316 63-84 (145)
261 2i1q_A DNA repair and recombin 26.4 84 0.0029 30.0 5.7 62 254-323 3-71 (322)
262 2kp7_A Crossover junction endo 26.3 37 0.0013 27.0 2.5 21 293-313 56-76 (87)
263 1v4a_A Glutamate-ammonia-ligas 24.1 1.4E+02 0.0047 30.5 7.1 28 368-395 154-182 (440)
264 2kz3_A Putative uncharacterize 24.0 61 0.0021 25.5 3.4 52 300-361 9-60 (83)
265 1coo_A RNA polymerase alpha su 24.0 15 0.00051 30.1 -0.2 45 299-343 27-73 (98)
266 3pzp_A DNA polymerase kappa; D 23.8 89 0.0031 32.7 5.7 52 256-318 340-393 (517)
267 3t7k_A RTT107, regulator of TY 20.4 2.5E+02 0.0085 26.7 7.4 85 14-100 131-241 (256)
268 2csb_A Topoisomerase V, TOP61; 20.0 3.4E+02 0.012 26.1 8.2 66 232-311 398-463 (519)
No 1
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=100.00 E-value=2.5e-62 Score=501.74 Aligned_cols=257 Identities=28% Similarity=0.469 Sum_probs=233.2
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCccccchhhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHH
Q 012388 207 PDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFE 286 (464)
Q Consensus 207 ~~~N~~ia~~l~~la~~~e~~g~~~r~~aY~rAa~~l~~lp~~I~s~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~ 286 (464)
.++|++|+++|++||++|++.|+.||++||++||++|+++|++|+++.++.+|||||+++|++|.||++||++++||+++
T Consensus 14 ~~~N~~i~~~L~~ia~~~e~~g~~~r~~AYr~Aa~~l~~l~~~i~~~~~l~~lpGIG~~~A~kI~E~l~tG~~~~le~L~ 93 (360)
T 2ihm_A 14 THHNTLLSEALETLAEAAGFEANEGRLLSFSRAASVLKSLPCPVASLSQLHGLPYFGEHSTRVIQELLEHGTCEEVKQVR 93 (360)
T ss_dssp SCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCSSCCCSGGGGTTCTTCCHHHHHHHHHHHHHSCCHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCcccCCHHHHhcCCCCCHHHHHHHHHHHHcCChHHHHHHh
Confidence 67899999999999999999996699999999999999999999999999999999999999999999999999999999
Q ss_pred hhchhHHHHHhhhccCcCHHHHHHHHHcCCCCHHHHhhc-cCcchHHHhhHhhHHhhccCCCHHHHHHHHHHHHHHhhhc
Q 012388 287 KDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE-DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEV 365 (464)
Q Consensus 287 ~~~~~~~l~lf~~I~GvGpktA~~ly~~GirtledL~~~-~~L~~~q~~Glk~~ed~~~~i~r~Ea~~i~~iv~~~~~~~ 365 (464)
+++.+.++..|++|||||||||++||++||+||+||+.. ++|+..|++|++||+|+.++|||+||++++++|.+.+..+
T Consensus 94 ~d~~~~~l~~l~~I~GvG~kta~~l~~~Gi~tledL~~~~~~L~~~~~~Gl~~~~d~~~ripr~ea~~i~~~i~~~l~~~ 173 (360)
T 2ihm_A 94 CSERYQTMKLFTQVFGVGVKTANRWYQEGLRTLDELREQPQRLTQQQKAGLQYYQDLSTPVRRADAEALQQLIEAAVRQT 173 (360)
T ss_dssp HSHHHHHHHHHHTSTTCCHHHHHHHHHTTCCSHHHHHTCCTTCCHHHHHHHHTHHHHHSCEEHHHHHHHHHHHHHHHHTT
T ss_pred cccchHHHHHHhCCCCCCHHHHHHHHHcCCCCHHHHHhcccchHHHHHHHHHHHHHhcCCEEHHHHHHHHHHHHHHHHhc
Confidence 988899999999999999999999999999999999953 5899999999999999999999999999999999999889
Q ss_pred CCCEEEEEcccccccCCcCCCccEEEeCCCcchhhhHHHHHHHHHHhcccccccccccccC------C---CCCCCCCce
Q 012388 366 LPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHS------E---EGTDSGVDT 436 (464)
Q Consensus 366 ~p~~~v~~~GsyRRgke~~gDvDiLit~~d~~~~~~~l~~lv~~L~~~g~l~~~L~~~~~~------~---~~~~~~~~~ 436 (464)
.|++.|++||||||||++||||||||||+++..+.++|.+|++.|++.|+|++.+...... . ..+-+..+|
T Consensus 174 ~~~~~v~i~GSyRRgket~gDvDilit~~~~~~~~~ll~~v~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~~~k 253 (360)
T 2ihm_A 174 LPGATVTLTGGFRRGKLQGHDVDFLITHPEEGQEVGLLPKVMSCLQSQGLVLYHQYHRSHLADSAHNLRQRSSTMDVFER 253 (360)
T ss_dssp CTTCEEEECHHHHTTCSEESEEEEEEECSSTTTTTTHHHHHHHHHHHTTCEEEEEEECCC---------------CCCCE
T ss_pred CCCcEEEEccccccCCCccCCeEEEEecCChhhhhhHHHHHHHHHHhCCCeeeecchhhhhccccccccccccccccccc
Confidence 9999999999999999999999999999999988999999999999999999755321111 0 011224679
Q ss_pred EEEEeecCCC--------------CcceeeeEEEecCcccc
Q 012388 437 YFGLCTYPGR--------------ELRHRIDFKVLASLSLI 463 (464)
Q Consensus 437 ~~g~~~~p~~--------------~~~rRiDi~~~P~~~~~ 463 (464)
|||||++|+. ..+|||||++||+++|.
T Consensus 254 ~~~v~~lp~~~~~~~g~~~~~~~~~~~~rVDl~~vp~~~~g 294 (360)
T 2ihm_A 254 SFCILGLPQPQQAALAGALPPCPTWKAVRVDLVVTPSSQFP 294 (360)
T ss_dssp EEEEEEEECC-------------CEEEEEEEEEECCTTSHH
T ss_pred eeeEeecCccccccccccccccccCCceEEEEEEECHHHHH
Confidence 9999999931 14789999999999974
No 2
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=100.00 E-value=1.3e-61 Score=499.42 Aligned_cols=256 Identities=23% Similarity=0.401 Sum_probs=234.0
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCccccchhhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHH
Q 012388 207 PDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFE 286 (464)
Q Consensus 207 ~~~N~~ia~~l~~la~~~e~~g~~~r~~aY~rAa~~l~~lp~~I~s~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~ 286 (464)
+++|++|+++|++||++|++.|+.||++||++||++|+++|++|+++.++.+|||||+++|++|+||++||++++||+++
T Consensus 33 ~~~N~~i~~~L~~ia~~~e~~g~~~rv~AYr~Aa~~l~~l~~~i~~~~~l~~lpGIG~~ia~kI~E~l~tG~~~~le~l~ 112 (381)
T 1jms_A 33 NNYNQLFTDALDILAENDELRENEGSCLAFMRASSVLKSLPFPITSMKDTEGIPCLGDKVKSIIEGIIEDGESSEAKAVL 112 (381)
T ss_dssp CCTTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTCSSCCCSGGGGTTCSSCCHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHhCCccccCHHHHhcCCCCcHHHHHHHHHHHHcCCcHHHHHHh
Confidence 68899999999999999999996699999999999999999999999999999999999999999999999999999999
Q ss_pred hhchhHHHHHhhhccCcCHHHHHHHHHcCCCCHHHHhhc--cCcchHHHhhHhhHHhhccCCCHHHHHHHHHHHHHHhhh
Q 012388 287 KDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE--DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEE 364 (464)
Q Consensus 287 ~~~~~~~l~lf~~I~GvGpktA~~ly~~GirtledL~~~--~~L~~~q~~Glk~~ed~~~~i~r~Ea~~i~~iv~~~~~~ 364 (464)
+++.+..+..|++|||||||||++||++||+||+||++. .+++..|++|++||+|+.++|||+||++++++|.+.+..
T Consensus 113 ~d~~~~~l~~l~~I~GvGpk~a~~ly~~Gi~tledL~~~~g~kl~~~q~~Gl~~~~d~~~ripr~ea~~ia~~i~~~l~~ 192 (381)
T 1jms_A 113 NDERYKSFKLFTSVFGVGLKTAEKWFRMGFRTLSKIQSDKSLRFTQMQKAGFLYYEDLVSCVNRPEAEAVSMLVKEAVVT 192 (381)
T ss_dssp HCHHHHHHHHHHTSTTCCHHHHHHHHHTTCCSHHHHHHCSSCCCCHHHHHHHHTHHHHHSCBCHHHHHHHHHHHHHHHHH
T ss_pred cCcchhHHHHHHccCCCCHHHHHHHHHcCCCcHHHHHhCcccchHHHHHHHHHHHHHhcCCEEHHHHHHHHHHHHHHHHh
Confidence 988889999999999999999999999999999999952 379999999999999999999999999999999999988
Q ss_pred cCCCEEEEEcccccccCCcCCCccEEEeCCCcchhhh--HHHHHHHHHHhccccccccccc---------ccCCCCCCCC
Q 012388 365 VLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKG--FLSKYVKKLKEMKFLREDLIFS---------THSEEGTDSG 433 (464)
Q Consensus 365 ~~p~~~v~~~GsyRRgke~~gDvDiLit~~d~~~~~~--~l~~lv~~L~~~g~l~~~L~~~---------~~~~~~~~~~ 433 (464)
+.|++.+++||||||||++||||||||||+++..+.+ +|.+|++.|++.|+|++.+... .+... +-++
T Consensus 193 ~~~~~~v~i~GSyRRgket~gDvDilit~~~~~~~~~~~ll~~vv~~L~~~~~i~~~~~~~~~~~~~~lp~~~~~-~~~~ 271 (381)
T 1jms_A 193 FLPDALVTMTGGFRRGKMTGHDVDFLITSPEATEDEEQQLLHKVTDFWKQQGLLLYCDILESTFEKFKQPSRKVD-ALDH 271 (381)
T ss_dssp HCTTCEEEECHHHHTTCSCBSSEEEEEECTTCCHHHHHHHHHHHHHHHHHTTCEEEEEEECCCCCTTCCCCSSCC-SCCC
T ss_pred cCCCcEEEEccccccCCCCcCCeEEEEeCCCccccchhhHHHHHHHHHHhCCCcccccccccccccccccccccc-cccc
Confidence 9999999999999999999999999999999988777 9999999999999998755321 12212 2235
Q ss_pred CceEEEEeecCCC--------------CcceeeeEEEecCcccc
Q 012388 434 VDTYFGLCTYPGR--------------ELRHRIDFKVLASLSLI 463 (464)
Q Consensus 434 ~~~~~g~~~~p~~--------------~~~rRiDi~~~P~~~~~ 463 (464)
.+||||||++|.. ..+|||||++||+++|.
T Consensus 272 ~~k~~~i~~lp~~~~~~g~~~~~~~~~~~~~rVDl~~vp~~~~g 315 (381)
T 1jms_A 272 FQKCFLILKLDHGRVHSEKSGQQEGKGWKAIRVDLVMCPYDRRA 315 (381)
T ss_dssp CEEEEEEEEEEGGGCCSSCC---CCSSEEEEEEEEEECCGGGHH
T ss_pred ccceeeEeecCccccccccccccccCCCCceEEEEEEECHHHHH
Confidence 7899999999853 14789999999999874
No 3
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=100.00 E-value=7.1e-62 Score=494.00 Aligned_cols=255 Identities=36% Similarity=0.686 Sum_probs=232.9
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCccccchhhhcCCCCCCHHHHHHHHHHHHhCCchh
Q 012388 202 LLYNPPDLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSK 281 (464)
Q Consensus 202 ~~~~~~~~N~~ia~~l~~la~~~e~~g~~~r~~aY~rAa~~l~~lp~~I~s~~~l~~lpgIG~~ia~kI~Eil~tG~~~~ 281 (464)
++.+++|+|++|+++|++||++|++.|++||++||++||++|+++|++|+++.++.+|||||+++|++|.||++||++.+
T Consensus 5 ~~~~~~~~N~~i~~~L~~ia~~~e~~g~~~r~~AYr~Aa~~l~~l~~~i~~~~~l~~lpGIG~~~A~kI~E~l~tG~~~~ 84 (335)
T 2bcq_A 5 SSQKATNHNLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRK 84 (335)
T ss_dssp -------CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSCCSCCCCHHHHHTSTTCCHHHHHHHHHHHHSSSCGG
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHcCccHhHHHHHHHHHHHHhCCccccCHHHHhcCCCccHHHHHHHHHHHHcCCchH
Confidence 33466899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhchhHHHHHhhhccCcCHHHHHHHHHcCCCCHHHHhhccCcchHHHhhHhhHHhhccCCCHHHHHHHHHHHHHH
Q 012388 282 LEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKA 361 (464)
Q Consensus 282 le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~GirtledL~~~~~L~~~q~~Glk~~ed~~~~i~r~Ea~~i~~iv~~~ 361 (464)
||+++.. +.++++|++|||||||||++||++||+||+||+++.+++..|++|++||+|+.++|||+||+++++.|.+.
T Consensus 85 le~l~~~--~p~l~ll~~v~GiG~k~a~~l~~~Gi~tledL~~a~~~k~~q~Igl~~~~~~~~ripr~ea~~ia~~i~~~ 162 (335)
T 2bcq_A 85 LDHISES--VPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKA 162 (335)
T ss_dssp GGGCCTT--HHHHHHHHTSTTCCHHHHHHHHHTTCCSHHHHHHHCCCCHHHHHHHHTTTGGGCCEEHHHHHHHHHHHHHH
T ss_pred HHHHhhh--hHHHHHHhcCCCcCHHHHHHHHHcCCCCHHHHHHHhcccHHHHHHHHHHHHhcCCEEHHHHHHHHHHHHHH
Confidence 9999754 44999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCEEEEEcccccccCCcCCCccEEEeCCCcchhhhHHHHHHHHHHhcccccccccccccCCCCCCCCCceEEEEe
Q 012388 362 GEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLC 441 (464)
Q Consensus 362 ~~~~~p~~~v~~~GsyRRgke~~gDvDiLit~~d~~~~~~~l~~lv~~L~~~g~l~~~L~~~~~~~~~~~~~~~~~~g~~ 441 (464)
+..+.|++.+++||||||||++||||||||||+++.++.++|.+|++.|++.|+|+++|.. |..++ ..+||||||
T Consensus 163 l~~~~~~~~v~i~GS~RRgket~gDiDilit~~~~~~~~~ll~~v~~~l~~~~~i~~~l~~--~~~~g---~~~k~~~v~ 237 (335)
T 2bcq_A 163 AQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLVS--QEENG---QQQKYLGVC 237 (335)
T ss_dssp HHTTCTTCEEEECHHHHTTCSEESSEEEEEECTTSSTTTTCHHHHHHHHHHTTCEEEEEEC--CTTST---TCCEEEEEE
T ss_pred HHhcCCCcEEEEccccccCCCCCCCeEEEEecCCchhhhhHHHHHHHHHHhCCchHHHhhc--cccCC---CCceEEEEE
Confidence 9889999999999999999999999999999999998999999999999999999999864 22111 258999999
Q ss_pred ecCCCC-cceeeeEEEecCcccc
Q 012388 442 TYPGRE-LRHRIDFKVLASLSLI 463 (464)
Q Consensus 442 ~~p~~~-~~rRiDi~~~P~~~~~ 463 (464)
++|+.+ .+|||||++||+++|.
T Consensus 238 ~l~~~~~~~~rVDl~~vp~~~~g 260 (335)
T 2bcq_A 238 RLPGPGRRHRRLDIIVVPYSEFA 260 (335)
T ss_dssp CCSSTTCCCEEEEEEECCGGGHH
T ss_pred EccCCCCCceEEEEEEECHHHHH
Confidence 999643 6899999999999874
No 4
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=100.00 E-value=2e-59 Score=476.19 Aligned_cols=245 Identities=37% Similarity=0.671 Sum_probs=231.6
Q ss_pred CcHHHHHHHHHHHHHHHHcCCC-hhHHHHHHHHHHHhcCCccccchhhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHh
Q 012388 209 LNKNITEIFGKLINIYRALGED-RRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEK 287 (464)
Q Consensus 209 ~N~~ia~~l~~la~~~e~~g~~-~r~~aY~rAa~~l~~lp~~I~s~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~ 287 (464)
+|++|+++|++||++|++.|+| ||++||++||++|+++|++|+++.++.+|||||+++|++|.||++||++++||++++
T Consensus 11 ~N~~i~~~L~~ia~l~e~~~~~~~rv~AYr~Aa~~l~~l~~~i~~~~~l~~LpGIG~~~A~kI~E~l~tG~~~~le~l~~ 90 (335)
T 2fmp_A 11 LNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATGKLRKLEKIRQ 90 (335)
T ss_dssp TTHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHCSSCCCCHHHHHTSTTCCHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhCCccccCHHHHhcCCCCcHHHHHHHHHHHHhCCcHHHHHHHc
Confidence 6999999999999999988887 899999999999999999999999999999999999999999999999999999999
Q ss_pred hchhHHHHHhhhccCcCHHHHHHHHHcCCCCHHHHhh-ccCcchHHHhhHhhHHhhccCCCHHHHHHHHHHHHHHhhhcC
Q 012388 288 DEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKN-EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVL 366 (464)
Q Consensus 288 ~~~~~~l~lf~~I~GvGpktA~~ly~~GirtledL~~-~~~L~~~q~~Glk~~ed~~~~i~r~Ea~~i~~iv~~~~~~~~ 366 (464)
++.+..+..|++|||||||||++||++||+||+||++ +++|+..|++|++||+|+.++|||+||+++++.|.+.+..+.
T Consensus 91 ~~~~~~l~~l~~V~GiGpk~a~~l~~~Gi~tledL~~a~~~l~~~~~~gl~~~~~~~~ripr~ea~~ia~~i~~~l~~~~ 170 (335)
T 2fmp_A 91 DDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVD 170 (335)
T ss_dssp CHHHHHHHHHTTSTTCCHHHHHHHHHTTCCSHHHHHTCGGGSCHHHHHHHHTHHHHTSCEEHHHHHHHHHHHHHHHHHHC
T ss_pred ccchhHHHHHhCCCCCCHHHHHHHHHcCCCCHHHHHHhhhhhHHHHHHHHHHHHHhcCcEEHHHHHHHHHHHHHHHHhcC
Confidence 9888999999999999999999999999999999998 678999999999999999999999999999999999998899
Q ss_pred CCEEEEEcccccccCCcCCCccEEEeCCCcchhh----hHHHHHHHHHHhcccccccccccccCCCCCCCCCceEEEEee
Q 012388 367 PEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHK----GFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCT 442 (464)
Q Consensus 367 p~~~v~~~GsyRRgke~~gDvDiLit~~d~~~~~----~~l~~lv~~L~~~g~l~~~L~~~~~~~~~~~~~~~~~~g~~~ 442 (464)
|++.+++||||||||++||||||||||++..++. +++.+|++.|++.|+|+++|..+ ..||||+|+
T Consensus 171 ~~~~v~i~GS~RRgket~gDiDilit~~~~~~~~~~~~~l~~~v~~~l~~~~~v~~~l~~g----------~~k~~~v~~ 240 (335)
T 2fmp_A 171 SEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKG----------ETKFMGVCQ 240 (335)
T ss_dssp TTCEEEECHHHHTTCSEESSEEEEEECTTBCSSCBCSSCHHHHHHHHHHHTTSEEEEEEEC----------SSEEEEEEC
T ss_pred CCcEEEeccccccccCccCCeEEEEECCCccccccchhhhHHHHHHHHHhCCcceeeeecC----------CceEEEEEE
Confidence 9999999999999999999999999999877666 89999999999999999998742 359999999
Q ss_pred cCCCC-----cceeeeEEEecCcccc
Q 012388 443 YPGRE-----LRHRIDFKVLASLSLI 463 (464)
Q Consensus 443 ~p~~~-----~~rRiDi~~~P~~~~~ 463 (464)
+|+.. .+|||||++||+++|.
T Consensus 241 l~~~~~~~~~~~~rVDl~~vp~~~~~ 266 (335)
T 2fmp_A 241 LPSKNDEKEYPHRRIDIRLIPKDQYY 266 (335)
T ss_dssp CCCCTTCCCCCCEEEEEEECCGGGHH
T ss_pred eCCcccccCCCceEEEEEEECHHHHH
Confidence 99743 5899999999999874
No 5
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=100.00 E-value=1.3e-43 Score=384.03 Aligned_cols=233 Identities=27% Similarity=0.342 Sum_probs=206.7
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCC-hhHHHHHHHHHHHhcCCccccchhh-----hcCCCCCCHHHHHHHHHHHHhCCchh
Q 012388 208 DLNKNITEIFGKLINIYRALGED-RRSFSYYKAIPVIEKLPFKIESADQ-----VKGLPGIGKSMQDHIQEIVTTGKLSK 281 (464)
Q Consensus 208 ~~N~~ia~~l~~la~~~e~~g~~-~r~~aY~rAa~~l~~lp~~I~s~~~-----l~~lpgIG~~ia~kI~Eil~tG~~~~ 281 (464)
|+|++|+++|++||++|+++|+| ||++||+|||++|+++|++|+++.+ +.+|||||++++.+|.|+++||.+..
T Consensus 1 ~~N~~i~~~l~~~a~~~e~~g~~~~r~~aYr~Aa~~l~~~~~~i~~~~~~~~~~~~~lp~iG~~~~~~i~~~v~~g~~~l 80 (575)
T 3b0x_A 1 MRNQELARIFEEIGLMSEFLGDNPFRVRAYHQAARTLYDLDTPIEEIAEKGKEALMELPGVGPDLAEKILEFLRTGKVRK 80 (575)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHCCSCHHHHHTTCHHHHHTSTTCCHHHHHHHHHHHHHSSCHH
T ss_pred CChHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhCCcchhhHhhcchhHHHhCCCCCHHHHHHHHHHHHcCcHHH
Confidence 57999999999999999999998 9999999999999999999999976 99999999999999999999999999
Q ss_pred hHHHHhhchhHHHHHhhhccCcCHHHHHHHHHc-CCCCHHHHhhc---cCcchHH--------Hh--hHhhHHhhccCCC
Q 012388 282 LEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRTLDDLKNE---DSLTHSQ--------RL--GLKYFDDIKTRIP 347 (464)
Q Consensus 282 le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~-GirtledL~~~---~~L~~~q--------~~--Glk~~ed~~~~i~ 347 (464)
++.+..+++. .+.+|++|+|||||+|.+||.. |++|++||+.+ +.|++++ ++ ||++|+++.+|||
T Consensus 81 ~~~~~~~~~~-~~~~l~~v~GvGpk~A~~~~~~lg~~~~~~l~~a~~~~~l~~~~GiG~k~a~~i~~~l~~~~~~~~r~~ 159 (575)
T 3b0x_A 81 HEELSRKVPR-GVLEVMEVPGVGPKTARLLYEGLGIDSLEKLKAALDRGDLTRLKGFGPKRAERIREGLALAQAAGKRRP 159 (575)
T ss_dssp HHHHHHHSCH-HHHHHHTSTTTCHHHHHHHHHTSCCCSHHHHHHHHHHTGGGGSTTCCHHHHHHHHHHHHHHHHHTCCEE
T ss_pred HhhhhhhhHH-HHHHHhcCCCcCHHHHHHHHHhcCCCCHHHHHHHHHcCCcccCCCCCccHHHHHHHHHHHHHHhcccee
Confidence 9999988765 6777779999999999999997 99999999864 4465433 33 8999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCEEEEEcccccccCCcCCCccEEEeCCCcchhhhHHHHHHHHHHhcccccccccccccCC
Q 012388 348 RHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSE 427 (464)
Q Consensus 348 r~Ea~~i~~iv~~~~~~~~p~~~v~~~GsyRRgke~~gDvDiLit~~d~~~~~~~l~~lv~~L~~~g~l~~~L~~~~~~~ 427 (464)
|+||+++.+.|.+.+..+.|.+.+++||||||||++||||||||||+++. .+++.|.+.++|++.+..
T Consensus 160 ~~e~~~~~~~i~~~l~~~~~~~~~~~~Gs~RRgke~~gDiD~li~~~~~~-------~v~~~l~~~~~~~~~~~~----- 227 (575)
T 3b0x_A 160 LGAVLSLARSLLEAIRALPGVERAELCGSARRYKDTVGDLDFLVASREGE-------RAVEGFVRLPQVKEVYAK----- 227 (575)
T ss_dssp HHHHHHHHHHHHHHHHTSTTCCEEEECHHHHTTCSEESSEEEEEECSSHH-------HHHHHHHTSTTEEEEEEE-----
T ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEEccccccCCCccCCeEEEEeCCCHH-------HHHHHHHhCcchhhHhhc-----
Confidence 99999999999998888888889999999999999999999999999875 388889999999987752
Q ss_pred CCCCCCCceEEEEeecCCCCcceeeeEEEecCcccc
Q 012388 428 EGTDSGVDTYFGLCTYPGRELRHRIDFKVLASLSLI 463 (464)
Q Consensus 428 ~~~~~~~~~~~g~~~~p~~~~~rRiDi~~~P~~~~~ 463 (464)
|..|+++ +++. +|||||++||+++|.
T Consensus 228 -----g~~k~~~--~~~~---~~rvDl~~~~~~~~~ 253 (575)
T 3b0x_A 228 -----GKERATV--FLKN---GLQVDLRVVPPESYG 253 (575)
T ss_dssp -----CSSEEEE--EETT---SCEEEEEEECGGGHH
T ss_pred -----CCCceEE--EccC---CcEEEEEEECHHHHH
Confidence 2346554 4553 589999999999874
No 6
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=100.00 E-value=5.2e-41 Score=363.76 Aligned_cols=222 Identities=15% Similarity=0.231 Sum_probs=185.9
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCCC-hhHHHHHHHHHHHhcCCccccchhh--hcCCCCCCHHHHHHHHHHHHhCCchhhH
Q 012388 207 PDLNKNITEIFGKLINIYRALGED-RRSFSYYKAIPVIEKLPFKIESADQ--VKGLPGIGKSMQDHIQEIVTTGKLSKLE 283 (464)
Q Consensus 207 ~~~N~~ia~~l~~la~~~e~~g~~-~r~~aY~rAa~~l~~lp~~I~s~~~--l~~lpgIG~~ia~kI~Eil~tG~~~~le 283 (464)
.++|++|+++|++||++|++.|++ ||++||++|+++|+.+|.+|+++.+ +..|||||++++.+|.|++++|.+..++
T Consensus 7 ~~~N~~i~~~l~~~a~~~e~~g~~~~r~~ay~~Aa~~i~~l~~~i~~~~~~~~~~lp~iG~~~~~~i~~~v~~g~~~~~~ 86 (578)
T 2w9m_A 7 APSRHRLVHALERTADLLDILGGEDFKSRAYRSAARSLEELNEETPELLAREFTGIPKVGKGIAAELSDFARSGTFAPLE 86 (578)
T ss_dssp -CCHHHHHHHHHHHHHHHHHC---CCSHHHHHHHHHHHHSCC----------CCSSTTCCHHHHHHHHHHHHHSSCHHHH
T ss_pred CCChHHHHHHHHHHHHHHHhhCCCcccHHHHHHHHHHHHhCchhhhhhhHhhhhhcCCCChhHHHHHHHHHcCChHHHHH
Confidence 456999999999999999999988 8999999999999999999999977 9999999999999999999999999999
Q ss_pred HHHhhchhHHHHHhhhccCcCHHHHHHHHHcCCCCHHHHhhc---cCcch--------HHHh--hHhhHHhhccCCCHHH
Q 012388 284 HFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE---DSLTH--------SQRL--GLKYFDDIKTRIPRHE 350 (464)
Q Consensus 284 ~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~GirtledL~~~---~~L~~--------~q~~--Glk~~ed~~~~i~r~E 350 (464)
.+..+++. .+..|++|+|||||+|++||+.||+|++||+++ ++|+. .|++ |+++|+++.+||||+|
T Consensus 87 ~~~~~~~~-~~~~L~~v~GVGpk~A~~i~~~G~~s~edL~~a~~~~~L~~~~GiG~Ktaq~I~~~l~~~~~~~~r~~~~e 165 (578)
T 2w9m_A 87 AAAGQLPP-GLLDLLGVRGLGPKKIRSLWLAGIDSLERLREAAESGELAGLKGFGAKSAATILENVVFLFEARQRQSLRA 165 (578)
T ss_dssp HHHHHSCH-HHHHHTTSTTCCHHHHHHHHHTTCCSHHHHHHHHHHTTTTTSTTCCHHHHHHHHHHHHHHHHHCSSEEHHH
T ss_pred HHhhhhHH-HHHHHhCCCCcCHHHHHHHHHcCCCCHHHHHHHHhhCccccCCCCCHHHHHHHHHHHHHHHhhcCCeeHHH
Confidence 99988876 666677999999999999999999999999974 57776 7788 9999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCEEEEEcccccccCCcCCCccEEEeCCCcchhhhHHHHHHHHHHhcccccccccccccCCCCC
Q 012388 351 VEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGT 430 (464)
Q Consensus 351 a~~i~~iv~~~~~~~~p~~~v~~~GsyRRgke~~gDvDiLit~~d~~~~~~~l~~lv~~L~~~g~l~~~L~~~~~~~~~~ 430 (464)
|+++++.|.+.+..+. +++||||||||++|||||||||| ++.. | |.+.++|+ .
T Consensus 166 ~~~~~~~i~~~l~~~~----~~~~Gs~RR~~e~~gDiD~li~~-~~~~-------v---l~~~~~v~---~--------- 218 (578)
T 2w9m_A 166 GLAVAEELAGALTDLS----PAPAGDVRRGLETVRAAELTVTG-TPDD-------V---LARLPELT---V--------- 218 (578)
T ss_dssp HHHHHHHHHHHTGGGC----CEECHHHHHTCSEESSEEEEEES-CHHH-------H---HHHCTTCE---E---------
T ss_pred HHHHHHHHHHHHHhCC----CEEecccccCCCccCCEEEEEec-ChHH-------H---HhcCccce---e---------
Confidence 9999999998887654 89999999999999999999999 7653 2 77778877 1
Q ss_pred CCCCceEEEEeecCCCCcceeeeEEEecCcccc
Q 012388 431 DSGVDTYFGLCTYPGRELRHRIDFKVLASLSLI 463 (464)
Q Consensus 431 ~~~~~~~~g~~~~p~~~~~rRiDi~~~P~~~~~ 463 (464)
.|..||++.. + .|||||++||+++|.
T Consensus 219 -~g~~k~~~~~--~----~~~vDl~~~~~~~~~ 244 (578)
T 2w9m_A 219 -QGDGVLSGDY--E----GVPVEIACAPAEARG 244 (578)
T ss_dssp -C---CEEEEE--T----TEEEEEEEECTTTHH
T ss_pred -cCCceEEEEE--C----CEEEEEEEECHHHHH
Confidence 1336888854 2 489999999999974
No 7
>2dun_A POL MU, DNA polymerase MU; layers A/B/A, parallel beta-sheet of 4 strands, non- homologous END jonting, somatic hypermutation, V(D)J recombination; HET: DNA; NMR {Homo sapiens} PDB: 2htf_A*
Probab=99.93 E-value=3.1e-26 Score=200.22 Aligned_cols=98 Identities=18% Similarity=0.232 Sum_probs=86.7
Q ss_pred CCCCCCCCCCeEEEEecCCCCchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCCh--HHHHHH--HHHhhh--ccCccc
Q 012388 12 ALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLE--ALLQQV--SKQHLA--RFKGSV 85 (464)
Q Consensus 12 ~~~~~~~F~g~~vy~~~~~~g~~R~~~l~~~i~~~Gg~V~~~ls~~VTHVV~~~~~--~~~~~l--~~~~~~--~~~~~i 85 (464)
...+..+|++|+|||++.+||.+|++||+++++++||+|++.++++|||||+++++ ++++|| +...++ ...++|
T Consensus 4 ~~~~~~~F~~v~iyive~kmG~sRr~fL~~la~~kGf~v~~~~S~~VTHVV~E~~s~~~~~~~L~~~~~~l~~~~~~~~l 83 (133)
T 2dun_A 4 GSSGSTRFPGVAIYLVEPRMGRSRRAFLTGLARSKGFRVLDACSSEATHVVMEETSAEEAVSWQERRMAAAPPGCTPPAL 83 (133)
T ss_dssp CCCSSCSEEEEEEEECHHHHCSHHHHHHHHHHHHHTEEECSSCCTTCCEEEESSCCHHHHHHHHHHHHHHSCTTCCCCEE
T ss_pred CCCCccccCccEEEEecCCcCHHHHHHHHHHHHhcCCEeccccCCCceEEEecCCCHHHHHHHHHHhhcccCcCCCCcEE
Confidence 45678999999999999999999999999999999999999999999999998876 478888 666665 236899
Q ss_pred cccchHHHHHhcCCCCCccccccc
Q 012388 86 IRYQWLEDSLRLGEKVSEDLYRIK 109 (464)
Q Consensus 86 V~~~Wl~ec~k~g~lvdee~y~l~ 109 (464)
|+++||+|||++|+|||++.|++.
T Consensus 84 LdisWltecm~~g~pV~~e~~~~l 107 (133)
T 2dun_A 84 LDISWLTESLGAGQPVPVECRHRL 107 (133)
T ss_dssp EEHHHHHHHHHHTSCCCCCTTTSC
T ss_pred eccHHHHHHHhcCCcCCcccceEe
Confidence 999999999999999998665543
No 8
>2coe_A Deoxynucleotidyltransferase, terminal variant; BRCT domain, DNA polymerase, teminal deoxynucleotidyltransferase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=7.6e-24 Score=183.80 Aligned_cols=102 Identities=21% Similarity=0.295 Sum_probs=87.2
Q ss_pred CCCCCCCCCCCCeEEEEecCCCCchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChH--HHHHHHHHhhhc-cCcccc
Q 012388 10 TPALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEA--LLQQVSKQHLAR-FKGSVI 86 (464)
Q Consensus 10 ~~~~~~~~~F~g~~vy~~~~~~g~~R~~~l~~~i~~~Gg~V~~~ls~~VTHVV~~~~~~--~~~~l~~~~~~~-~~~~iV 86 (464)
.++.+|+++|++|+|||++.+||.+|+++|+++++++||+|++.++++|||||++|.+. ++++++..++.. .+++||
T Consensus 12 ~~~~~p~~~F~g~~iy~v~~~~g~~R~~~l~~l~r~~G~~V~~~ls~~VTHVVve~~~~~e~~~~l~~~~l~~~~~~~lv 91 (120)
T 2coe_A 12 MASSPQDIKFQDLVVFILEKKMGTTRRALLMELARRKGFRVENELSDSVTHIVAENNSGSDVLEWLQAQKVQVSSQPELL 91 (120)
T ss_dssp SSSCSSCCSCTTCEEEEECTTTCHHHHHHHHHHHHHHTCEECSSCCTTCCEEEESSCCHHHHHHHHHHCCCCCSSCCEEE
T ss_pred CCCCCcccccCCeEEEEeecccchHHHHHHHHHHHHcCCEEeeccCCCcCEEEecCCCHHHHHHHHhccccccccccEEe
Confidence 45788999999999999999999999999999999999999999999999999986653 666666544443 368999
Q ss_pred ccchHHHHHhcCCCCCccc-cccccC
Q 012388 87 RYQWLEDSLRLGEKVSEDL-YRIKLD 111 (464)
Q Consensus 87 ~~~Wl~ec~k~g~lvdee~-y~l~~~ 111 (464)
+++||+|||++|+||||++ |.|..|
T Consensus 92 ~i~Wl~esmk~g~lv~ee~~~~l~~~ 117 (120)
T 2coe_A 92 DVSWLIECIGAGKPVEMTGKHQLSGP 117 (120)
T ss_dssp EHHHHHHHHHTTSCCCCSSSSBCCCS
T ss_pred ecHHHHHHHHcCCccCcccceEeccC
Confidence 9999999999999999855 455543
No 9
>2jw5_A DNA polymerase lambda; BRCT domain, family X polymerase, nonhomologous END joining (NHEJ), DNA damage, DNA repair, DNA replication, DNA synthesis; HET: DNA; NMR {Homo sapiens}
Probab=99.81 E-value=2.9e-21 Score=164.76 Aligned_cols=99 Identities=17% Similarity=0.336 Sum_probs=84.8
Q ss_pred CCCCCCCCCCeEEEEecCCCCchHHHHHHHHHHhcCCEEEeecCCCccEEEEcC-Ch--HHHHHHHHHhhhccCcccccc
Q 012388 12 ALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMD-LE--ALLQQVSKQHLARFKGSVIRY 88 (464)
Q Consensus 12 ~~~~~~~F~g~~vy~~~~~~g~~R~~~l~~~i~~~Gg~V~~~ls~~VTHVV~~~-~~--~~~~~l~~~~~~~~~~~iV~~ 88 (464)
...++++|+||++||++.+++..|++++.++++++||+|++.++++|||||+++ .+ +.+++++.+.++ ..++||+.
T Consensus 5 ~~~~~~~F~g~~v~~~p~~~~~~r~~i~~~~a~~~Ga~v~~~~~~~vTHVVvd~~~s~~~~l~~l~~~~l~-~~~~iV~~ 83 (106)
T 2jw5_A 5 GEEAEEWLSSLRAHVVRTGIGRARAELFEKQIVQHGGQLCPAQGPGVTHIVVDEGMDYERALRLLRLPQLP-PGAQLVKS 83 (106)
T ss_dssp CCCGGGCGGGSCCCBCTTTCCSSSTTHHHHHHHHTTCCCCSTTCTTCCEEEECSSSCHHHHHHHTTCSSCC-SSCEEEEH
T ss_pred cccCcCEeCCeEEEEEecCCchHHHHHHHHHHHHcCCEEeeccCCCccEEEEcCCCCHHHHHHHHhhcccC-CCcEEecC
Confidence 356889999999999999999999999999999999999999999999999974 32 355555543332 25799999
Q ss_pred chHHHHHhcCCCCCccccccccC
Q 012388 89 QWLEDSLRLGEKVSEDLYRIKLD 111 (464)
Q Consensus 89 ~Wl~ec~k~g~lvdee~y~l~~~ 111 (464)
+|++|||++|++|||++|.+.+|
T Consensus 84 ~Wv~dci~~~~llde~~y~~~~~ 106 (106)
T 2jw5_A 84 AWLSLCLQERRLVDVAGFSIFIP 106 (106)
T ss_dssp HHHHHHHHTCSCCCGGGTBCSCC
T ss_pred chHHHHHhcCcccCcccccccCC
Confidence 99999999999999999988764
No 10
>1jaj_A DNA polymerase beta-like protein; CIS peptide, viral protein; HET: DNA; NMR {African swine fever virus} SCOP: d.218.1.2 PDB: 1jqr_A*
Probab=99.69 E-value=6.7e-19 Score=162.51 Aligned_cols=102 Identities=19% Similarity=0.201 Sum_probs=86.3
Q ss_pred hhHhhHHhhccCCCHHHHHHHHHHHHHHhhhcCCCEEEEEcccccccCCcCCCccEEEeCCCcchhhhHHHHHHHHHHh-
Q 012388 334 LGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKE- 412 (464)
Q Consensus 334 ~Glk~~ed~~~~i~r~Ea~~i~~iv~~~~~~~~p~~~v~~~GsyRRgke~~gDvDiLit~~d~~~~~~~l~~lv~~L~~- 412 (464)
+|+++++++.+++.++.+.++ | -.||+.+++||||||||++||||||||||+++. +|++.|.+
T Consensus 6 ~~~~~~~~l~~~~~~~~~~~~---i------k~~g~~v~iaGS~RRgket~gDiDiLit~~~~~-------~v~~~L~~~ 69 (174)
T 1jaj_A 6 QGKKIVNHLRSRLAFEYNGQL---I------KILSKNIVAVGSLRREEKMLNDVDLLIIVPEKK-------LLKHVLPNI 69 (174)
T ss_dssp HHHHHHHHHHHSEEEEETTEE---E------EECTTTEEEEEHHHHTCSEECCEEEEEEESSHH-------HHHTSSSEE
T ss_pred hHHHHHHHHHhhhhHHhhccc---c------cCCCcEEEEeccccCCCCCCCCEEEEEecCCHH-------HHHHHHHhc
Confidence 699999999999999988654 1 158999999999999999999999999999853 58899999
Q ss_pred -ccccc-ccccccccCCCCCCCCCceEEEEeecCCCCcceeeeEEEecCcccc
Q 012388 413 -MKFLR-EDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVLASLSLI 463 (464)
Q Consensus 413 -~g~l~-~~L~~~~~~~~~~~~~~~~~~g~~~~p~~~~~rRiDi~~~P~~~~~ 463 (464)
.|+|+ +.+.. |..||++ ++|+.+.++||||+++|+++|.
T Consensus 70 ~~~~v~~~~l~~----------g~~k~~~--~l~~~~~~~rVDl~~vp~~~fg 110 (174)
T 1jaj_A 70 RIKGLSFSVKVC----------GERKCVL--FIEWEKKTYQLDLFTALAEEKP 110 (174)
T ss_dssp EESSCEEEEEEE----------TTTEEEE--EEESSSCCEEEEEEEEETTCHH
T ss_pred cCCceeHhHeec----------CCCeEEE--EeCCCCCceEEEEEEeCHHHHH
Confidence 99999 88742 3358888 6775446899999999999974
No 11
>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5
Probab=99.61 E-value=1.7e-15 Score=133.75 Aligned_cols=95 Identities=23% Similarity=0.357 Sum_probs=76.2
Q ss_pred CCCCCCCCCCeEEEEecCCCCchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHHhhhccCccccccchH
Q 012388 12 ALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWL 91 (464)
Q Consensus 12 ~~~~~~~F~g~~vy~~~~~~g~~R~~~l~~~i~~~Gg~V~~~ls~~VTHVV~~~~~~~~~~l~~~~~~~~~~~iV~~~Wl 91 (464)
...+..+|+||+|||.+ ....+++.|+++++++||+|++.+++.|||||+.+....+..... .....++||+++||
T Consensus 34 ~~~~~~lF~g~~i~i~G--~~~~~~~~L~~~i~~~Gg~v~~~l~~~vTHvI~~~~~~~~~~~~~--~~~~~~~iV~~~Wv 109 (132)
T 1wf6_A 34 FQAPEDLLDGCRIYLCG--FSGRKLDKLRRLINSGGGVRFNQLNEDVTHVIVGDYDDELKQFWN--KSAHRPHVVGAKWL 109 (132)
T ss_dssp CCCCTTTTTTCEEEEES--CCSHHHHHHHHHHHHTTCEEESSCCSSCCEEEESSCCSHHHHHHH--HSCCCCCEEEHHHH
T ss_pred ccccccccCCEEEEEEC--CChHHHHHHHHHHHHCCCEEeCcCCCCCeEEEECCchHHHHHHHH--hhCCCCeEechHHH
Confidence 45567899999999984 456788899999999999999999999999999864322221111 11236799999999
Q ss_pred HHHHhcCCCCCcccccccc
Q 012388 92 EDSLRLGEKVSEDLYRIKL 110 (464)
Q Consensus 92 ~ec~k~g~lvdee~y~l~~ 110 (464)
.||+++|++|||+.|.+..
T Consensus 110 ~dsi~~~~ll~e~~Y~~~~ 128 (132)
T 1wf6_A 110 LECFSKGYMLSEEPYIHSG 128 (132)
T ss_dssp HHHHHHSSCCCSGGGBCCC
T ss_pred HHHHHcCCcCCHhhccCCC
Confidence 9999999999999997753
No 12
>3pa6_A Microcephalin; BRCT domain, cell cycle; HET: MSE; 1.50A {Homo sapiens} PDB: 3ktf_A* 2wt8_A*
Probab=99.61 E-value=1.6e-15 Score=129.32 Aligned_cols=92 Identities=20% Similarity=0.266 Sum_probs=74.0
Q ss_pred CCCCCeEEEEecC-CCCc-hHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHHhhhccCccccccchHHHH
Q 012388 17 GIFAGMRVFLVEK-GVQN-RRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDS 94 (464)
Q Consensus 17 ~~F~g~~vy~~~~-~~g~-~R~~~l~~~i~~~Gg~V~~~ls~~VTHVV~~~~~~~~~~l~~~~~~~~~~~iV~~~Wl~ec 94 (464)
.+|+||+|||... ..|. .|.+.|.++++++||+|.+.++.+|||||+.+.... . .+ ++...+++||++.||++|
T Consensus 6 p~f~g~vvyvd~~~~~g~~~~s~~l~~~l~~~GA~v~~~l~~~vTHvV~~~~~~~-~-~~--~A~~~~i~iV~~~Wv~~C 81 (107)
T 3pa6_A 6 PILKDVVAYVEVWSSNGTENYSKTFTTQLVDMGAKVSKTFNKQVTHVIFKDGYQS-T-WD--KAQKRGVKLVSVLWVEKC 81 (107)
T ss_dssp CTTTTCEEEEEEBCTTSCCBCHHHHHHHHHHTTCEECSSCCTTCCEEEEESCCHH-H-HH--HHHHHTCEEECHHHHHHH
T ss_pred cccCCEEEEEeccCCCChhhHHHHHHHHHHHcCCEEecccCCCccEEEEeCCCCh-H-HH--HHhcCCCEEECHHHHHHH
Confidence 4999999999654 4554 466789999999999999999999999999765421 1 11 122236799999999999
Q ss_pred HhcCCCCCccccccccCC
Q 012388 95 LRLGEKVSEDLYRIKLDP 112 (464)
Q Consensus 95 ~k~g~lvdee~y~l~~~~ 112 (464)
+++|++|||++|.+..++
T Consensus 82 ~~~~~~vdE~~Y~i~~~~ 99 (107)
T 3pa6_A 82 RTAGAHIDESLFPAANMN 99 (107)
T ss_dssp HHHTSCCCGGGSBCCCTT
T ss_pred HHhCccCChhcccCCCCc
Confidence 999999999999987554
No 13
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A*
Probab=99.53 E-value=1.5e-14 Score=141.89 Aligned_cols=96 Identities=23% Similarity=0.260 Sum_probs=75.4
Q ss_pred CCCCCCCCCeEEEEec--------CCCCchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCC-hHHHHHHHHHhhhccCc
Q 012388 13 LDSNGIFAGMRVFLVE--------KGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDL-EALLQQVSKQHLARFKG 83 (464)
Q Consensus 13 ~~~~~~F~g~~vy~~~--------~~~g~~R~~~l~~~i~~~Gg~V~~~ls~~VTHVV~~~~-~~~~~~l~~~~~~~~~~ 83 (464)
..|.++|+||++||.. ..+...|+++++++++++||+|++.++++|||||+.+. ++.......++.....+
T Consensus 159 ~~~~~lF~~~~vy~~~~~~~~~~~~~i~~~~l~~~~~~i~~~GG~v~~~l~~~vTHVVv~~~~~r~~~~~~~~~~~~~~~ 238 (263)
T 3ii6_X 159 CSPLSMFRRHTVYLDSYAVINDLSTKNEGTRLAIKALELRFHGAKVVSCLAEGVSHVIIGEDHSRVADFKAFRRTFKRKF 238 (263)
T ss_dssp TCGGGTTTTCEEEECCBSSTTCGGGBCCSSHHHHHHHHHHHTTCEEESSCCTTCCEEEECSCCTTHHHHHHHHHTCSSCC
T ss_pred CCcchhhCCeEEEEecccccCCcccccchhHHHHHHHHHHccCCEEecCCCCCceEEEECCCCccHHHHHHHHhhcCCCC
Confidence 4578999999999963 24455688999999999999999999999999999764 33211111122122368
Q ss_pred cccccchHHHHHhcCCCCCcccccc
Q 012388 84 SVIRYQWLEDSLRLGEKVSEDLYRI 108 (464)
Q Consensus 84 ~iV~~~Wl~ec~k~g~lvdee~y~l 108 (464)
+||+++||.+||++|++|||++|.+
T Consensus 239 ~iV~~~Wv~dci~~~~~l~E~~Y~i 263 (263)
T 3ii6_X 239 KILKESWVTDSIDKCELQEENQYLI 263 (263)
T ss_dssp EEEETHHHHHHHHTTSCCCGGGTBC
T ss_pred EEeChHHHHHHHHcCCcCCHhhCCC
Confidence 9999999999999999999999975
No 14
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}
Probab=99.47 E-value=8.1e-14 Score=114.30 Aligned_cols=88 Identities=20% Similarity=0.243 Sum_probs=68.6
Q ss_pred CCCCCCCCCeEEEEecCCCCchHHHHHHHHHHhcCCEEEeecC--CCccEEEEcCChHHHHHHHHHhhhccCccccccch
Q 012388 13 LDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLS--KKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQW 90 (464)
Q Consensus 13 ~~~~~~F~g~~vy~~~~~~g~~R~~~l~~~i~~~Gg~V~~~ls--~~VTHVV~~~~~~~~~~l~~~~~~~~~~~iV~~~W 90 (464)
.++..+|+||++||.+... . .+..|+++++.+||++.+.++ ..+||||+.+..... ... ..+.+||+.+|
T Consensus 2 ~~~~~~f~g~~~~i~g~~~-~-~~~~l~~~i~~~GG~~~~~~~~~~~~THlI~~~~~~~K----~~~--~~~~~iV~~~W 73 (92)
T 4id3_A 2 SQSSKIFKNCVIYINGYTK-P-GRLQLHEMIVLHGGKFLHYLSSKKTVTHIVASNLPLKK----RIE--FANYKVVSPDW 73 (92)
T ss_dssp ----CTTTTCEEEECSCCS-S-CHHHHHHHHHHTTCEEESSCCCTTTCCEEECSCCCHHH----HHH--TTTSCEECTHH
T ss_pred CccccccCCEEEEEeCCCC-c-CHHHHHHHHHHCCCEEEEEecCCCceEEEEecCCCHHH----HHH--cCCCCEEcccH
Confidence 3567899999999985222 2 345689999999999999998 899999998765321 111 13679999999
Q ss_pred HHHHHhcCCCCCcccccc
Q 012388 91 LEDSLRLGEKVSEDLYRI 108 (464)
Q Consensus 91 l~ec~k~g~lvdee~y~l 108 (464)
|.||+++|+++||++|.+
T Consensus 74 i~dci~~~~~l~e~~Y~l 91 (92)
T 4id3_A 74 IVDSVKEARLLPWQNYSL 91 (92)
T ss_dssp HHHHHHHTSCCCGGGGBC
T ss_pred HHHHHHcCCcCChhhccc
Confidence 999999999999999987
No 15
>2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens}
Probab=99.42 E-value=2.8e-13 Score=112.65 Aligned_cols=91 Identities=23% Similarity=0.354 Sum_probs=71.3
Q ss_pred CCCCCCCCCCCeEEEEecCCCCchHHHHHHHHHHhcCCEEEeecC-CCccEEEEcCChHHHHHHHHHhhhccCccccccc
Q 012388 11 PALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLS-KKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQ 89 (464)
Q Consensus 11 ~~~~~~~~F~g~~vy~~~~~~g~~R~~~l~~~i~~~Gg~V~~~ls-~~VTHVV~~~~~~~~~~l~~~~~~~~~~~iV~~~ 89 (464)
.+..+..+|+||++|+.+... ..++.|+++++.+||++...++ ..|||||+...... +.+.+. +.+||+.+
T Consensus 5 ~~~~~~~lF~g~~~~isg~~~--~~~~~L~~~i~~~GG~~~~~~~~~~~THlI~~~~~~~----k~~~~~--~~~iV~p~ 76 (97)
T 2ebw_A 5 SSGTSSTIFSGVAIYVNGYTD--PSAEELRKLMMLHGGQYHVYYSRSKTTHIIATNLPNA----KIKELK--GEKVIRPE 76 (97)
T ss_dssp CCSCCCCTTTTCEEEECSSCS--SCHHHHHHHHHHTTCEECSSCCSSSCCEEECSCCCTT----HHHHTS--SSCCBCTH
T ss_pred cCCCCCCCCCCeEEEEeCCCc--ccHHHHHHHHHHcCCEEeeecCCCCCEEEEecCCChH----HHHHhc--CCCEeChH
Confidence 345667899999999975322 2356899999999999988776 78999999865321 111221 67999999
Q ss_pred hHHHHHhcCCCCCccccccc
Q 012388 90 WLEDSLRLGEKVSEDLYRIK 109 (464)
Q Consensus 90 Wl~ec~k~g~lvdee~y~l~ 109 (464)
||.||+++|+++|+++|.+.
T Consensus 77 Wl~dci~~~~~l~~~~Y~l~ 96 (97)
T 2ebw_A 77 WIVESIKAGRLLSYIPYQLY 96 (97)
T ss_dssp HHHHHHHHTSCCCSGGGBSC
T ss_pred HHHHHHHcCCccCchHcEec
Confidence 99999999999999999874
No 16
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=99.40 E-value=2e-13 Score=115.83 Aligned_cols=96 Identities=14% Similarity=0.190 Sum_probs=71.3
Q ss_pred CCCCCCCCCeEEEEecCCCCchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHHhhhccCccccccchHH
Q 012388 13 LDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLE 92 (464)
Q Consensus 13 ~~~~~~F~g~~vy~~~~~~g~~R~~~l~~~i~~~Gg~V~~~ls~~VTHVV~~~~~~~~~~l~~~~~~~~~~~iV~~~Wl~ 92 (464)
.....+|.||+|+|.+. .. ..+..|++++..+||+|...++..|||||+.+... ....+..++...+.+||+.+||.
T Consensus 10 ~~~~~~l~g~~i~isg~-~~-~~r~~l~~li~~~Gg~v~~~~s~~~THlI~~~~~~-~~~~K~~~A~~~gi~IV~~~Wl~ 86 (107)
T 3l3e_A 10 EEAPKPLHKVVVCVSKK-LS-KKQSELNGIAASLGADYRRSFDETVTHFIYQGRPN-DTNREYKSVKERGVHIVSEHWLL 86 (107)
T ss_dssp ----CTTTTCEEEECGG-GG-GGHHHHHHHHHHTTCEEESSCCTTCCEEECCCCTT-CCCHHHHHHHHTTCEEECHHHHH
T ss_pred ccccCCCCCeEEEEeCC-Ch-HhHHHHHHHHHHcCCEEeccccCCceEEEecCCCC-CCCHHHHHHHHCCCeEecHHHHH
Confidence 34457899999999754 22 45668899999999999999999999999943211 00012222223478999999999
Q ss_pred HHHhcCCCCCccccccccC
Q 012388 93 DSLRLGEKVSEDLYRIKLD 111 (464)
Q Consensus 93 ec~k~g~lvdee~y~l~~~ 111 (464)
+|+++|++|||+.|.+...
T Consensus 87 ~c~~~~~~l~e~~Y~~~~~ 105 (107)
T 3l3e_A 87 DCAQECKHLPESLYPHTYN 105 (107)
T ss_dssp HHHHHTSCCCGGGCCTTCC
T ss_pred HHHHhCCCCchhhCCCCCC
Confidence 9999999999999998653
No 17
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=9.9e-13 Score=115.50 Aligned_cols=95 Identities=17% Similarity=0.276 Sum_probs=74.6
Q ss_pred CCCCCCCCCCeEEEEecCCCCchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHHhhhccCccccccchH
Q 012388 12 ALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWL 91 (464)
Q Consensus 12 ~~~~~~~F~g~~vy~~~~~~g~~R~~~l~~~i~~~Gg~V~~~ls~~VTHVV~~~~~~~~~~l~~~~~~~~~~~iV~~~Wl 91 (464)
..+...+|.||+|+|.+.- + ..+..|++++..+||+|...++..+||||+.+.... +..++...+.+||+.+||
T Consensus 16 ~~~~~~~f~g~~i~itG~~-~-~~r~~l~~~i~~~Gg~v~~~~s~~~ThLI~~~~~~~----K~~~A~~~gi~IV~~~Wl 89 (129)
T 2d8m_A 16 PEELGKILQGVVVVLSGFQ-N-PFRSELRDKALELGAKYRPDWTRDSTHLICAFANTP----KYSQVLGLGGRIVRKEWV 89 (129)
T ss_dssp HHHHTTTSTTEEEEEESCC-T-THHHHHHHHHHHTTEEEESSCCTTCCEEEESSSSCH----HHHHHHHHTCEEEETHHH
T ss_pred CCCccccCCCeEEEEeCCC-c-HHHHHHHHHHHHcCCEEeCCcCCCCeEEEecCCCCh----HHHHHHHCCCcEecHHHH
Confidence 3444568999999997543 3 345678999999999999999999999999864321 112222347899999999
Q ss_pred HHHHhcCCCCCccccccccCC
Q 012388 92 EDSLRLGEKVSEDLYRIKLDP 112 (464)
Q Consensus 92 ~ec~k~g~lvdee~y~l~~~~ 112 (464)
.+|++++++||++.|.+..++
T Consensus 90 ~d~~~~~~~l~e~~Y~l~~~~ 110 (129)
T 2d8m_A 90 LDCHRMRRRLPSQRYLMAGPG 110 (129)
T ss_dssp HHHHHTTSCCCGGGGBCSSSS
T ss_pred HHHHHhCCcCChHhcccCCCC
Confidence 999999999999999997543
No 18
>2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.33 E-value=5.5e-13 Score=113.85 Aligned_cols=88 Identities=13% Similarity=0.183 Sum_probs=72.2
Q ss_pred CCCCCCeEEEEecCCCCchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHHhhhccCccccccchHHHHH
Q 012388 16 NGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDSL 95 (464)
Q Consensus 16 ~~~F~g~~vy~~~~~~g~~R~~~l~~~i~~~Gg~V~~~ls~~VTHVV~~~~~~~~~~l~~~~~~~~~~~iV~~~Wl~ec~ 95 (464)
-.+|.||+|+|. ++....+..+.++++++||++...++..+||+|+.+... .+.+.+...+.+||+.+||.||+
T Consensus 10 ~~~F~g~~i~~s--g~~~~~r~~l~~~i~~~GG~~~~~~~~~~THLV~~~~~~----~K~~~a~~~~i~IV~~~Wl~dsi 83 (109)
T 2cou_A 10 VPPFQDCILSFL--GFSDEEKHSMEEMTEMQGGSYLPVGDERCTHLIVEENTV----KDLPFEPSKKLFVVKQEWFWGSI 83 (109)
T ss_dssp CCTTTTCBEEEE--SSCHHHHHHHHHHHHHHTCBCCCTTCTTCSEEEECTTTC----SSCSSCCCTTSEEECHHHHHHHH
T ss_pred CCcCCCeEEEec--CCCHHHHHHHHHHHHHcCCEEecccCCCccEEEEeCCcc----HHHHHHHHCCCeEecHHHHHHHH
Confidence 358999999997 466666778899999999999999999999999975432 11222334478999999999999
Q ss_pred hcCCCCCccccccc
Q 012388 96 RLGEKVSEDLYRIK 109 (464)
Q Consensus 96 k~g~lvdee~y~l~ 109 (464)
+.|+++||+.|.+.
T Consensus 84 ~~g~~ldE~~Y~~~ 97 (109)
T 2cou_A 84 QMDARAGETMYLYE 97 (109)
T ss_dssp HTTSCCCGGGTBCC
T ss_pred HcCCcCChhccCCC
Confidence 99999999999885
No 19
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens}
Probab=99.27 E-value=2.7e-12 Score=110.22 Aligned_cols=88 Identities=13% Similarity=0.157 Sum_probs=73.9
Q ss_pred CCCCCeEEEEecCCCCchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHHhhhccCccccccchHHHHHh
Q 012388 17 GIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDSLR 96 (464)
Q Consensus 17 ~~F~g~~vy~~~~~~g~~R~~~l~~~i~~~Gg~V~~~ls~~VTHVV~~~~~~~~~~l~~~~~~~~~~~iV~~~Wl~ec~k 96 (464)
..|.||+|+|. |+....+..|++++.++||++...++..+||+|+.+.+.. +.+.+..++.+||+.+||.||++
T Consensus 20 p~F~g~~Ic~s--Gf~~~er~~l~~~i~~~GG~~~~~l~~~cTHLV~~~~~~~----K~~~A~~~~i~IVs~eWl~dsi~ 93 (112)
T 3l46_A 20 PPFQDCILSFL--GFSDEEKTNMEEMTEMQGGKYLPLGDERCTHLVVEENIVK----DLPFEPSKKLYVVKQEWFWGSIQ 93 (112)
T ss_dssp CTTTTCEECEE--SCCHHHHHHHHHHHHHTTCEECCTTCTTCSEEEECTTTBS----SCSSCCCSSCEEEEHHHHHHHHH
T ss_pred CccCCeEEEEe--CCCHHHHHHHHHHHHHcCCEECcccCCCceEEEecCCchh----hHHHHHHCCeeEecHHHHHHHHH
Confidence 58999999996 5666667789999999999999999999999999875431 22233345789999999999999
Q ss_pred cCCCCCcccccccc
Q 012388 97 LGEKVSEDLYRIKL 110 (464)
Q Consensus 97 ~g~lvdee~y~l~~ 110 (464)
.|..+||..|.+..
T Consensus 94 ~g~~ldE~~Y~~~~ 107 (112)
T 3l46_A 94 MDARAGETMYLYEK 107 (112)
T ss_dssp HTSCCCGGGSBCCC
T ss_pred cCCccChhhceecc
Confidence 99999999999953
No 20
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A
Probab=99.23 E-value=2.4e-11 Score=102.84 Aligned_cols=89 Identities=12% Similarity=0.249 Sum_probs=71.0
Q ss_pred CCCCCeEEEEecCCCCchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCC-hHHHHHHHHHhhhccCccccccchHHHHH
Q 012388 17 GIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDL-EALLQQVSKQHLARFKGSVIRYQWLEDSL 95 (464)
Q Consensus 17 ~~F~g~~vy~~~~~~g~~R~~~l~~~i~~~Gg~V~~~ls~~VTHVV~~~~-~~~~~~l~~~~~~~~~~~iV~~~Wl~ec~ 95 (464)
.+|.||++||..... ...+..+.+++...||.|.+.++++|||||++.. +..++... .......+|+.+||.+|+
T Consensus 6 d~F~g~~f~l~~~~p-~~~r~~l~ryiia~GG~v~~~~~~~vTHvIt~~~~d~~~~~a~---~~~p~~~~V~P~WI~~Ci 81 (104)
T 3pc6_A 6 DFFEGKHFFLYGEFP-GDERRRLIRYVTAFNGELEDYMNERVQFVITAQEWDPNFEEAL---MENPSLAFVRPRWIYSCN 81 (104)
T ss_dssp CTTTTCEEEEESCCS-TTHHHHHHHHHHHTTCEECSSCCTTCCEEEESSCCCHHHHHHH---TTCTTCEEECHHHHHHHH
T ss_pred hhhCCeEEEEcCCCc-HHHHHHHHHHHHHcCCEEEcccCCCceEEEeCCCCChhHHHHh---hhCCCCeEEccHHHHHHH
Confidence 599999999986432 3455678999999999999999999999999864 33333221 122357899999999999
Q ss_pred hcCCCCCccccccc
Q 012388 96 RLGEKVSEDLYRIK 109 (464)
Q Consensus 96 k~g~lvdee~y~l~ 109 (464)
+.+++|+++.|.+.
T Consensus 82 ~~~klvp~~~y~~~ 95 (104)
T 3pc6_A 82 EKQKLLPHQLYGVV 95 (104)
T ss_dssp HHTSCCCGGGGBCC
T ss_pred hcCccCCcccceec
Confidence 99999999999985
No 21
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=99.15 E-value=9.7e-12 Score=121.39 Aligned_cols=96 Identities=13% Similarity=0.179 Sum_probs=54.7
Q ss_pred CCCCCCCCCCeEEEEecCCCCchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCCh--H--HHHHHHHHhhhc-------
Q 012388 12 ALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLE--A--LLQQVSKQHLAR------- 80 (464)
Q Consensus 12 ~~~~~~~F~g~~vy~~~~~~g~~R~~~l~~~i~~~Gg~V~~~ls~~VTHVV~~~~~--~--~~~~l~~~~~~~------- 80 (464)
...+..+|+||++||... ....+.++++.+++++||+|++.++..+||||+...+ + .+..++.....+
T Consensus 154 ~~~~~~lF~g~~~yl~~~-~~~~~~~~l~~~i~~~GG~v~~~l~~~t~hVV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (264)
T 1z56_C 154 RRFPLFLFSNRIAYVPRR-KISTEDDIIEMKIKLFGGKITDQQSLCNLIIIPYTDPILRKDCMNEVHEKIKEQIKASDTI 232 (264)
T ss_dssp CCCCCC---------------------CHHHHHHHTTSCCCCSSSCSEEECCCSSTTTHHHHSSHHHHTTTTTTTSSSSC
T ss_pred ccCchhhhCCeEEEEecC-CCchhHHHHHHHHHHcCCEEecccCCCEEEEEeCCCccchHHHHHHHHHHHHhhccccccc
Confidence 346788999999999853 2345677899999999999999998777777775432 2 112232221111
Q ss_pred cC-ccccccchHHHHHhcCCCCCcccccc
Q 012388 81 FK-GSVIRYQWLEDSLRLGEKVSEDLYRI 108 (464)
Q Consensus 81 ~~-~~iV~~~Wl~ec~k~g~lvdee~y~l 108 (464)
.. +++|+.+||.+||++|++|||+.|.+
T Consensus 233 ~~~~~iV~~~Wv~dci~~~~ll~e~~Y~~ 261 (264)
T 1z56_C 233 PKIARVVAPEWVDHSINENCQVPEEDFPV 261 (264)
T ss_dssp CCCCEEECTHHHHHHHTTSCCCSSCCC--
T ss_pred CCCCEEecHHHHHHHHHcCCcCCHHHcCC
Confidence 12 59999999999999999999999976
No 22
>2ep8_A Pescadillo homolog 1; A/B/A 3 layers, nucleolus, ribosome biogenesis, DNA damage, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=1.3e-10 Score=97.76 Aligned_cols=84 Identities=15% Similarity=0.215 Sum_probs=66.0
Q ss_pred CCCCCCCCCCeEEEEecCCCCchHHHHHHHHHHhcCCEEEee-----------cCCCccEEEEcCChHHHHHHHHHhhhc
Q 012388 12 ALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEK-----------LSKKVTHVLAMDLEALLQQVSKQHLAR 80 (464)
Q Consensus 12 ~~~~~~~F~g~~vy~~~~~~g~~R~~~l~~~i~~~Gg~V~~~-----------ls~~VTHVV~~~~~~~~~~l~~~~~~~ 80 (464)
..++..+|+|+++||.. ...++.|+.+++++||.|... .+.+|||+|++.... +. ..
T Consensus 6 ~~~~~~LF~g~~F~i~~----e~p~~~le~~I~~~GG~v~~~~~~~~g~~~~~~~~~iTh~I~drp~~-----~~---~~ 73 (100)
T 2ep8_A 6 SGKHKKLFEGLKFFLNR----EVPREALAFIIRSFGGEVSWDKSLCIGATYDVTDSRITHQIVDRPGQ-----QT---SV 73 (100)
T ss_dssp CSCSCCTTSSCEEECCS----SSCHHHHHHHHHHTTCEEECCTTTSSCCCSCTTCTTCCEEECSCTTT-----SC---CB
T ss_pred cCchHHHcCCcEEEEec----CCCHHHHHHHHHHcCCEEEeccccccCcccccCCCceEEEEecccch-----hh---hc
Confidence 45667899999999963 234678999999999999875 257899999975321 11 11
Q ss_pred cCccccccchHHHHHhcCCCCCccccc
Q 012388 81 FKGSVIRYQWLEDSLRLGEKVSEDLYR 107 (464)
Q Consensus 81 ~~~~iV~~~Wl~ec~k~g~lvdee~y~ 107 (464)
.+..+|.++||.||++++++||+++|.
T Consensus 74 ~~r~~VqPqWV~Dcin~~~lLp~~~Y~ 100 (100)
T 2ep8_A 74 IGRCYVQPQWVFDSVNARLLLPVAEYF 100 (100)
T ss_dssp TTBEEECTHHHHHHHHHTSCCCTTTCC
T ss_pred CCCeEEcchHHHHHHhcCCcCChhhcC
Confidence 245899999999999999999999984
No 23
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=99.10 E-value=1.7e-10 Score=94.54 Aligned_cols=68 Identities=15% Similarity=0.219 Sum_probs=62.1
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhcCCccccchhhhcCCCCCCHHHHHHHHHHHHh
Q 012388 208 DLNKNITEIFGKLINIYRALGEDRRSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTT 276 (464)
Q Consensus 208 ~~N~~ia~~l~~la~~~e~~g~~~r~~aY~rAa~~l~~lp~~I~s~~~l~~lpgIG~~ia~kI~Eil~t 276 (464)
..|..|++-|+++++.++. ++..++.+|++|+.+|+++|.+|.+..|+..|+|||++|+++|.|+|+.
T Consensus 13 ~~N~lf~~wL~e~~~~a~~-r~~k~~~~Y~KA~~sLk~~P~~i~s~~e~~~L~giG~ki~~~L~e~L~~ 80 (87)
T 2kp7_A 13 CPNPLFVRWLTEWRDEAAS-RGRHTRFVFQKALRSLQRYPLPLRSGKEAKILQHFGDRLCRMLDEKLKQ 80 (87)
T ss_dssp SCCCHHHHHHHHHHHHHHH-HTCTTHHHHHHHHHHHHHCCSCCCSHHHHHTCTTTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHhCCCCCCCHHHHHHhhcccHHHHHHHHHHHHH
Confidence 3599999999999998874 4456789999999999999999999999999999999999999999863
No 24
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A
Probab=99.04 E-value=1.3e-10 Score=109.57 Aligned_cols=81 Identities=19% Similarity=0.282 Sum_probs=65.9
Q ss_pred EecCCCCchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCC--hHHHHHHHHHhhhccCccccccchHHHHHhcCCCCCc
Q 012388 26 LVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDL--EALLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSE 103 (464)
Q Consensus 26 ~~~~~~g~~R~~~l~~~i~~~Gg~V~~~ls~~VTHVV~~~~--~~~~~~l~~~~~~~~~~~iV~~~Wl~ec~k~g~lvde 103 (464)
|+.+++...++..+.++++++||++++.++++|||||+.++ .+..+.+. ....+.+||+.+||++|+++|+++||
T Consensus 5 i~~sg~~~~~~~~l~~~~~~~G~~~~~~~~~~~THlV~~~~~~~rt~K~l~---a~~~g~~IV~~~Wl~~c~~~~~~~~e 81 (210)
T 2nte_A 5 LIGSGLSSEQQKMLSELAVILKAKKYTEFDSTVTHVVVPGDAVQSTLKCML---GILNGCWILKFEWVKACLRRKVCEQE 81 (210)
T ss_dssp EEESSCCHHHHHHHHHHHHHTTCEEESSCCTTCCEEEESSSSCCCSHHHHH---HHHTTCEEEETHHHHHHHHHTSCCCG
T ss_pred EEECCCCHHHHHHHHHHHHHcCCEEeCCCCCCCeEEEEcCCCcchHHHHHH---HHhcCCEEecHHHHHHHHHcCCcCCh
Confidence 33457888888899999999999999999999999999763 33333332 11236799999999999999999999
Q ss_pred cccccc
Q 012388 104 DLYRIK 109 (464)
Q Consensus 104 e~y~l~ 109 (464)
++|.+.
T Consensus 82 ~~y~~~ 87 (210)
T 2nte_A 82 EKYEIP 87 (210)
T ss_dssp GGTBCT
T ss_pred hhccCC
Confidence 999985
No 25
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A
Probab=98.97 E-value=3.8e-10 Score=105.99 Aligned_cols=84 Identities=14% Similarity=0.216 Sum_probs=67.0
Q ss_pred CeEEEEecCCCCchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCCh-----HHHHHHHHHhhhccCccccccchHHHHH
Q 012388 21 GMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLE-----ALLQQVSKQHLARFKGSVIRYQWLEDSL 95 (464)
Q Consensus 21 g~~vy~~~~~~g~~R~~~l~~~i~~~Gg~V~~~ls~~VTHVV~~~~~-----~~~~~l~~~~~~~~~~~iV~~~Wl~ec~ 95 (464)
++++.+ +++...++..+.++++++||.+++.+++.|||||+.+.+ +..+.+. +...+.+||+.+||.+|+
T Consensus 4 ~~~~~~--sg~~~~~~~~l~~~~~~~G~~~~~~~~~~~THli~~~~~~~~~~rt~k~~~---a~~~g~~IV~~~Wl~~~~ 78 (214)
T 1t15_A 4 RMSMVV--SGLTPEEFMLVYKFARKHHITLTNLITEETTHVVMKTDAEFVCERTLKYFL---GIAGGKWVVSYFWVTQSI 78 (214)
T ss_dssp CCEEEE--ESCCHHHHHHHHHHHHHHTCEECSSCCTTCCEEEECBCTTSEECCBHHHHH---HHHTTCEEEETHHHHHHH
T ss_pred cEEEEE--CCCCHHHHHHHHHHHHHhCCEEeCccCCCCcEEEEeCCcccchhhhHHHHH---HHhcCCEEeCHHHHHHHH
Confidence 444444 578888888999999999999999999999999997652 2222222 122367899999999999
Q ss_pred hcCCCCCccccccc
Q 012388 96 RLGEKVSEDLYRIK 109 (464)
Q Consensus 96 k~g~lvdee~y~l~ 109 (464)
++|+++||+.|.+.
T Consensus 79 ~~~~~~~e~~y~~~ 92 (214)
T 1t15_A 79 KERKMLNEHDFEVR 92 (214)
T ss_dssp HTTSCCCGGGGBCC
T ss_pred HCCCcCChHHeEee
Confidence 99999999999986
No 26
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3
Probab=98.93 E-value=1.1e-09 Score=104.17 Aligned_cols=90 Identities=11% Similarity=0.164 Sum_probs=70.3
Q ss_pred CCCCeEEEEecCCCCchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChH--HHHHHHHHhhhccCccccccchHHHHH
Q 012388 18 IFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEA--LLQQVSKQHLARFKGSVIRYQWLEDSL 95 (464)
Q Consensus 18 ~F~g~~vy~~~~~~g~~R~~~l~~~i~~~Gg~V~~~ls~~VTHVV~~~~~~--~~~~l~~~~~~~~~~~iV~~~Wl~ec~ 95 (464)
-+++++|.+. ++.......+.++++.+||.+++.+++.|||||+...+. ..+..+...+...+..||+.+||.+|+
T Consensus 4 ~~~~~~i~~s--g~~~~~~~~l~~~~~~~G~~~~~~~~~~~THlI~~~~~~~~~~rt~K~~~a~~~g~~IV~~~Wl~~~~ 81 (229)
T 1l0b_A 4 AERDISMVVS--GLTPKEVMIVQKFAEKYRLALTDVITEETTHVIIKTDAEFVCERTLKYFLGIAGGKWIVSYSWVIKSI 81 (229)
T ss_dssp CCCCCEEEEE--SCCHHHHHHHHHHHHHTTCEECSSCCSSCCEEEECBCTTSEECCCHHHHHHHHTTCEEEETHHHHHHH
T ss_pred CCCCeEEEEc--CCCHHHHHHHHHHHHHcCCEEeCCcCCCCCEEEEcCCccccccccHHHHHHHHCCCcEecHHHHHHHH
Confidence 4678888885 677777788999999999999999999999999976521 001122122222367899999999999
Q ss_pred hcCCCCCccccccc
Q 012388 96 RLGEKVSEDLYRIK 109 (464)
Q Consensus 96 k~g~lvdee~y~l~ 109 (464)
++|+++||+.|.+.
T Consensus 82 ~~~~~~~e~~y~~~ 95 (229)
T 1l0b_A 82 QERKLLSVHEFEVK 95 (229)
T ss_dssp TTTSCCCSGGGBCC
T ss_pred HCCCcCChHHeEec
Confidence 99999999999885
No 27
>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe}
Probab=98.91 E-value=1.2e-09 Score=112.13 Aligned_cols=89 Identities=18% Similarity=0.252 Sum_probs=69.7
Q ss_pred CCCCCCeEEEEecCCC--CchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHHhhhcc-CccccccchHH
Q 012388 16 NGIFAGMRVFLVEKGV--QNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARF-KGSVIRYQWLE 92 (464)
Q Consensus 16 ~~~F~g~~vy~~~~~~--g~~R~~~l~~~i~~~Gg~V~~~ls~~VTHVV~~~~~~~~~~l~~~~~~~~-~~~iV~~~Wl~ 92 (464)
..+|.||+|+|.+... ....+..+.+++..+||++.+.++.+|||||+.+.... +..++... +.+||+.+||.
T Consensus 280 ~~~L~G~~ivfSG~~~~~~~~~~~~l~~l~~~lGa~v~~~vs~~vTHLVa~~~~t~----K~~~A~~~~~I~IV~~~Wl~ 355 (372)
T 3ef0_A 280 QKVLKGCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEVVLDFSVPPTHLIAAKIRTE----KVKKAVSMGNIKVVKLNWLT 355 (372)
T ss_dssp TTTSTTCEEEEESSSCTTSCTTTSHHHHHHHHTTCEEESSSSSCCSEEEECSCCCH----HHHHHHHSSSCCEEEHHHHH
T ss_pred hhhcCCcEEEEecccCCCcchhHHHHHHHHHHcCCEEeCcCCCCceEEEEcCCCch----HHHHHHhcCCCEEEcHHHHH
Confidence 3689999999986522 12234578999999999999999999999999754321 11222233 57999999999
Q ss_pred HHHhcCCCCCcccccc
Q 012388 93 DSLRLGEKVSEDLYRI 108 (464)
Q Consensus 93 ec~k~g~lvdee~y~l 108 (464)
+|++.++.+||+.|.+
T Consensus 356 ~c~~~~~~vdE~~Y~l 371 (372)
T 3ef0_A 356 ESLSQWKRLPESDYLL 371 (372)
T ss_dssp HHHHTTSCCCGGGGBC
T ss_pred HHHHhCCcCChhhcee
Confidence 9999999999999986
No 28
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A*
Probab=98.87 E-value=2.8e-09 Score=106.29 Aligned_cols=90 Identities=19% Similarity=0.272 Sum_probs=72.0
Q ss_pred CCCCCCeEEEEecCCCCchHHHHHHHHHHhcCCEEEeecC-CCccEEEEcCChHHHHHHHHHhhhccCccccccchHHHH
Q 012388 16 NGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLS-KKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDS 94 (464)
Q Consensus 16 ~~~F~g~~vy~~~~~~g~~R~~~l~~~i~~~Gg~V~~~ls-~~VTHVV~~~~~~~~~~l~~~~~~~~~~~iV~~~Wl~ec 94 (464)
..+|.||+|+|.+ +....+..+++++..+||++.+.++ ..+||||+.+.... +...+...+.+||+.+||.+|
T Consensus 197 ~~~f~g~~i~~tG--~~~~~r~~l~~li~~~GG~~~~~ls~~~~THLI~~~~~g~----K~~~A~~~gi~IV~~~Wl~ds 270 (298)
T 3olc_X 197 CPIFLGCIICVTG--LCGLDRKEVQQLTVKHGGQYMGQLKMNECTHLIVQEPKGQ----KYECAKRWNVHCVTTQWFFDS 270 (298)
T ss_dssp CCTTTTCEEEECS--CCHHHHHHHHHHHHHTTCEECSSCCTTTCCEEECSSSCSH----HHHHHHHTTCEEECHHHHHHH
T ss_pred ccccCCeEEEEeC--CCCccHHHHHHHHHHcCCEEeceecCCCceEEEEeCCCch----HHHHHHHCCCeEEeHHHHHHH
Confidence 4689999999974 4444567899999999999999998 89999999765421 112223347899999999999
Q ss_pred HhcCCCCCccccccccC
Q 012388 95 LRLGEKVSEDLYRIKLD 111 (464)
Q Consensus 95 ~k~g~lvdee~y~l~~~ 111 (464)
++.|+++||+.|.+..+
T Consensus 271 i~~g~~lde~~Y~l~~~ 287 (298)
T 3olc_X 271 IEKGFCQDESIYKTEPR 287 (298)
T ss_dssp HHHTSCCCGGGSBSCC-
T ss_pred HHCCCCCCchhcCCCCC
Confidence 99999999999999643
No 29
>3pc7_A DNA ligase 3; DNA repair, BRCT domain, protein:protein interactions, XRCC1 domain, DNA binding protein; HET: DNA MSE; 1.65A {Homo sapiens} SCOP: c.15.1.2 PDB: 3pc8_C* 1imo_A* 1in1_A* 3qvg_A*
Probab=98.83 E-value=2.5e-09 Score=87.62 Aligned_cols=73 Identities=19% Similarity=0.339 Sum_probs=59.9
Q ss_pred CCCCCCeEEEEecCCCCchHHHHHHHHHHhcCCEEEeecC-CCccEEEEcCChHHHHHHHHHhhhccCccccccchHHHH
Q 012388 16 NGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLS-KKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDS 94 (464)
Q Consensus 16 ~~~F~g~~vy~~~~~~g~~R~~~l~~~i~~~Gg~V~~~ls-~~VTHVV~~~~~~~~~~l~~~~~~~~~~~iV~~~Wl~ec 94 (464)
..+|.||++|+... +. +...|.+++...||.|+..++ .+|||||..+.+ .....+|+++||-+|
T Consensus 14 pdiFsg~~~~l~~~-v~--~~~~l~RyiiAfgG~v~~~~~~~~vTHvI~~~~~------------~~~~~~V~p~WI~dc 78 (88)
T 3pc7_A 14 LDIFTGVRLYLPPS-TP--DFSRLRRYFVAFDGDLVQEFDMTSATHVLGSRDK------------NPAAQQVSPEWIWAC 78 (88)
T ss_dssp CCCSTTCEECCCTT-ST--THHHHHHHHHHTTCEECCGGGGGGCSEEESCCTT------------CTTSEEECHHHHHHH
T ss_pred ChhhcCeEEEccCC-cC--chhhheeeeeecCCEEecccCCCcCeEEecCCCc------------CCCCcEEchHHHHHH
Confidence 47999999999753 22 336789999999999988776 589999976631 235689999999999
Q ss_pred HhcCCCCCc
Q 012388 95 LRLGEKVSE 103 (464)
Q Consensus 95 ~k~g~lvde 103 (464)
++.|++|++
T Consensus 79 I~k~~Ll~~ 87 (88)
T 3pc7_A 79 IRKRRLVAP 87 (88)
T ss_dssp HHHTSCCSC
T ss_pred HhCCcccCC
Confidence 999999975
No 30
>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe}
Probab=98.72 E-value=9e-09 Score=107.31 Aligned_cols=88 Identities=18% Similarity=0.255 Sum_probs=68.4
Q ss_pred CCCCCeEEEEecCCCC--chHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHHhhhcc-CccccccchHHH
Q 012388 17 GIFAGMRVFLVEKGVQ--NRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARF-KGSVIRYQWLED 93 (464)
Q Consensus 17 ~~F~g~~vy~~~~~~g--~~R~~~l~~~i~~~Gg~V~~~ls~~VTHVV~~~~~~~~~~l~~~~~~~~-~~~iV~~~Wl~e 93 (464)
..|.||+|.|.+.-.. ...+..+..++..+||++...++..|||||+.+... .+..++... +.+||+.+||.+
T Consensus 351 ~~L~G~~IvfSG~~p~~~~~~r~~l~~~~~~lGa~~~~~vs~~vTHLVa~~~~t----~K~~~A~~~g~IkIVs~~WL~d 426 (442)
T 3ef1_A 351 KVLKGCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEVVLDFSVPPTHLIAAKIRT----EKVKKAVSMGNIKVVKLNWLTE 426 (442)
T ss_dssp TTSTTCEEEEESSSCTTSCSTTSHHHHHHHTTTCEECSSSSSCCSEEEECSCCC----HHHHHHHHHSSSEEEEHHHHHH
T ss_pred cccCCcEEEEecccCCCCCccHHHHHHHHHHcCCEEeCCCCCCceEEEeCCCCC----HHHHHHHhcCCCEEEeHHHHHH
Confidence 6899999999864211 112346899999999999999999999999975432 112222223 579999999999
Q ss_pred HHhcCCCCCcccccc
Q 012388 94 SLRLGEKVSEDLYRI 108 (464)
Q Consensus 94 c~k~g~lvdee~y~l 108 (464)
|++.++.+||..|.+
T Consensus 427 cl~~~krldE~~YlL 441 (442)
T 3ef1_A 427 SLSQWKRLPESDYLL 441 (442)
T ss_dssp HHHHTSCCCGGGTBC
T ss_pred HHHcCCcCChhcccc
Confidence 999999999999986
No 31
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A*
Probab=98.72 E-value=1.6e-08 Score=98.87 Aligned_cols=92 Identities=12% Similarity=0.176 Sum_probs=67.5
Q ss_pred CCCCCCCCCCeEEEEecCCCCchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHHhhhcc-Cccccccch
Q 012388 12 ALDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARF-KGSVIRYQW 90 (464)
Q Consensus 12 ~~~~~~~F~g~~vy~~~~~~g~~R~~~l~~~i~~~Gg~V~~~ls~~VTHVV~~~~~~~~~~l~~~~~~~~-~~~iV~~~W 90 (464)
..+.+.+|+|+++|+.. +.....++-|++++.++||++....+..+||||+...... ...+... ...||+++|
T Consensus 4 ~~~~s~lF~G~~f~V~s-g~~~~~k~~L~~lI~~~GG~v~~n~~~~t~~iIa~~~~~k-----~~~~~~~g~~~IV~p~W 77 (263)
T 3ii6_X 4 GSKISNIFEDVEFCVMS-GTDSQPKPDLENRIAEFGGYIVQNPGPDTYCVIAGSENIR-----VKNIILSNKHDVVKPAW 77 (263)
T ss_dssp --CCCCTTTTCEEEECC-CC--CCHHHHHHHHHHTTCEECSSCCTTEEEEECSSCCHH-----HHHHHHSCSCCEECHHH
T ss_pred CCcCcccCCCeEEEEEc-CCCCCCHHHHHHHHHHcCCEEEecCCCCEEEEEeCCCCHH-----HHHHHhcCCCCEeehHH
Confidence 34566899999999964 2333345678999999999999888877777888654421 1112222 379999999
Q ss_pred HHHHHhcCCCCCccccccc
Q 012388 91 LEDSLRLGEKVSEDLYRIK 109 (464)
Q Consensus 91 l~ec~k~g~lvdee~y~l~ 109 (464)
|.||+++|++||.++|.+.
T Consensus 78 v~Dci~~~~llp~~p~~~~ 96 (263)
T 3ii6_X 78 LLECFKTKSFVPWQPRFMI 96 (263)
T ss_dssp HHHHHHHTSCCCCCGGGEE
T ss_pred HHHHHhcCCcCCCCHHHHh
Confidence 9999999999998887665
No 32
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A*
Probab=98.67 E-value=1.4e-08 Score=95.30 Aligned_cols=81 Identities=21% Similarity=0.285 Sum_probs=62.4
Q ss_pred EecCCCCchHHHHHHHHHHhcCC-EEEeecCCCccEEEEcCChHHHHHHHHHhhhccCccccccchHHHHHhcCCCCCcc
Q 012388 26 LVEKGVQNRRLQIWRQKLVQMGA-TVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSED 104 (464)
Q Consensus 26 ~~~~~~g~~R~~~l~~~i~~~Gg-~V~~~ls~~VTHVV~~~~~~~~~~l~~~~~~~~~~~iV~~~Wl~ec~k~g~lvdee 104 (464)
|+-+++.......+.+.+..+|| .+++.+++.+||||+....+-.+.+. +...+.+||+.+||.+|+++|+.+||+
T Consensus 14 ~~~sgl~~~~~~~l~~~i~~lgG~~~~~~~~~~~THlv~~~~~rT~K~l~---ai~~g~~Iv~~~Wv~~~~~~g~~l~e~ 90 (199)
T 3u3z_A 14 LVMTSMPSEKQNVVIQVVDKLKGFSIAPDVCETTTHVLSGKPLRTLNVLL---GIARGCWVLSYDWVLWSLELGHWISEE 90 (199)
T ss_dssp EEEESCCHHHHHHHHHHHHHHCSCEEESSCCTTEEEEEESSCCCBHHHHH---HHHTTCEEEETHHHHHHHHHTSCCCSG
T ss_pred EEEcCCCHHHHHHHHHHHHHcCCcEEecCCCCCCeEEEECCCCCCHHHHH---HHHCCCcEEeHHHHHHHhhCCCCCChh
Confidence 33357777777788999999866 77788999999999976433222222 222367899999999999999999999
Q ss_pred ccccc
Q 012388 105 LYRIK 109 (464)
Q Consensus 105 ~y~l~ 109 (464)
.|.+.
T Consensus 91 ~y~~~ 95 (199)
T 3u3z_A 91 PFELS 95 (199)
T ss_dssp GGBCT
T ss_pred hcccc
Confidence 99885
No 33
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens}
Probab=98.65 E-value=2.2e-08 Score=95.49 Aligned_cols=86 Identities=21% Similarity=0.347 Sum_probs=68.5
Q ss_pred CCCCeEEEEecCCCCchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHHhhhccCccccccchHHHHHhc
Q 012388 18 IFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDSLRL 97 (464)
Q Consensus 18 ~F~g~~vy~~~~~~g~~R~~~l~~~i~~~Gg~V~~~ls~~VTHVV~~~~~~~~~~l~~~~~~~~~~~iV~~~Wl~ec~k~ 97 (464)
.+.+++|.|. |+.......+++.++.+||.+++.. .++||+|+....+..+.+ .+...+.+||+.+||.+|+++
T Consensus 13 ~~~~~~i~~S--G~~~~~~~~l~~~i~~lGg~v~~~~-~~~THLI~~~~~rT~K~l---~A~~~g~~IVs~~Wl~~c~~~ 86 (219)
T 3sqd_A 13 PELTPFVLFT--GFEPVQVQQYIKKLYILGGEVAESA-QKCTHLIASKVTRTVKFL---TAISVVKHIVTPEWLEECFRC 86 (219)
T ss_dssp GGGCCEEEEC--SCCHHHHHHHHHHHHHTTCEECSSG-GGCSEEECSSCCCCHHHH---HHTTTCSEEECHHHHHHHHHH
T ss_pred CCCCeEEEEe--CCChHHHHHHHHHHHHCCCEEeCCC-CCceEEEECCCCCCHHHH---HHHHcCCCEecHHHHHHHHHc
Confidence 4577888886 5666666789999999999999886 889999997654432222 222346799999999999999
Q ss_pred CCCCCccccccc
Q 012388 98 GEKVSEDLYRIK 109 (464)
Q Consensus 98 g~lvdee~y~l~ 109 (464)
|+.+||+.|.+.
T Consensus 87 ~~~l~e~~y~l~ 98 (219)
T 3sqd_A 87 QKFIDEQNYILR 98 (219)
T ss_dssp TSCCCSGGGBCC
T ss_pred CCCCChHhccCC
Confidence 999999999985
No 34
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B
Probab=98.63 E-value=4.6e-08 Score=95.53 Aligned_cols=96 Identities=13% Similarity=0.065 Sum_probs=70.9
Q ss_pred CCCCCCCCCCCeEEEEecCCCC---------------------------chHHHHHHHHHHhcCCEEEeecCCC------
Q 012388 11 PALDSNGIFAGMRVFLVEKGVQ---------------------------NRRLQIWRQKLVQMGATVEEKLSKK------ 57 (464)
Q Consensus 11 ~~~~~~~~F~g~~vy~~~~~~g---------------------------~~R~~~l~~~i~~~Gg~V~~~ls~~------ 57 (464)
|-.....+|.|+.++|-..... .....-|+++|+.+||.|++++++.
T Consensus 8 p~p~~~~iF~g~~F~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~I~~~GG~v~~~~~~~~~~~~~ 87 (259)
T 1kzy_C 8 PLPLNKTLFLGYAFLLTMATTSDKLASRSKLPDGPTGSSEEEEEFLEIPPFNKQYTESQLRAGAGYILEDFNEAQCNTAY 87 (259)
T ss_dssp CCCSSTTTTTTEEEEECCCC---------------------------CCCCCHHHHHHHHHTTTCEECSSCCTTTTTTTC
T ss_pred CCCCCCcCcCCcEEEEEcccccccccccccccccccccccccccccccCcccHHHHHHHHHHCCCEEecCccccccccCC
Confidence 3344578999999999443111 1244679999999999999988754
Q ss_pred ccEEEEcCChHHHHHHHHHhhhccCccccccchHHHHHhcCCCCCccccccc
Q 012388 58 VTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIK 109 (464)
Q Consensus 58 VTHVV~~~~~~~~~~l~~~~~~~~~~~iV~~~Wl~ec~k~g~lvdee~y~l~ 109 (464)
+||+|+....+-.+.+. ....+..||+.+||.+|+++|+++|++.|.+.
T Consensus 88 ~t~LIa~~~~rt~K~l~---ala~g~~iVs~~Wl~dc~~~~~~l~~~~Y~l~ 136 (259)
T 1kzy_C 88 QCLLIADQHCRTRKYFL---CLASGIPCVSHVWVHDSCHANQLQNYRNYLLP 136 (259)
T ss_dssp EEEEEESSCCCSHHHHH---HHHHTCCEEETHHHHHHHHHTSCCCGGGSBCC
T ss_pred CeEEEcCCCCCcHHHHH---HHhcCCCCccHHHHHHHHHcCCcCCHHHccCC
Confidence 79999976444222222 11236789999999999999999999999985
No 35
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A*
Probab=98.61 E-value=5.3e-08 Score=93.81 Aligned_cols=85 Identities=15% Similarity=0.109 Sum_probs=66.0
Q ss_pred CCeEEEEecCCCCchHHHHHHHHHHhcCCEEEe--ecCCCccEEEEcCChHHHHHHHHHhhhccCccccccchHHHHHhc
Q 012388 20 AGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEE--KLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDSLRL 97 (464)
Q Consensus 20 ~g~~vy~~~~~~g~~R~~~l~~~i~~~Gg~V~~--~ls~~VTHVV~~~~~~~~~~l~~~~~~~~~~~iV~~~Wl~ec~k~ 97 (464)
++.++.|. ++.......+.+.+++.||.|++ .++..+||||+....+-.+.+. ....+..||+.+||++|+++
T Consensus 8 ~~~~~~~S--g~~~~~~~~l~~~i~~LGg~~~~~~~~~~~~THlV~~~~~RT~K~l~---aia~G~wIvs~~wl~~s~~~ 82 (235)
T 3al2_A 8 KQYIFQLS--SLNPQERIDYCHLIEKLGGLVIEKQCFDPTCTHIVVGHPLRNEKYLA---SVAAGKWVLHRSYLEACRTA 82 (235)
T ss_dssp CCCEEEEE--SCCHHHHHHHHHHHHHTTCEECCSSSCCTTCCEEEESSCCCSHHHHH---HHHTTCEEECTHHHHHHHHH
T ss_pred CCEEEEEc--CCCHHHHHHHHHHHHHcCCEEeccCCCCCCCcEEEECCCCCCHHHHH---HHHcCCcCccHHHHHHHHHc
Confidence 45555554 56655566799999999999986 4789999999987654333322 12247899999999999999
Q ss_pred CCCCCccccccc
Q 012388 98 GEKVSEDLYRIK 109 (464)
Q Consensus 98 g~lvdee~y~l~ 109 (464)
|+.+||+.|.+.
T Consensus 83 g~~l~E~~ye~~ 94 (235)
T 3al2_A 83 GHFVQEEDYEWG 94 (235)
T ss_dssp TSCCCSGGGBTT
T ss_pred CCCCChhceeec
Confidence 999999999986
No 36
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=98.55 E-value=2.3e-09 Score=103.63 Aligned_cols=120 Identities=17% Similarity=0.135 Sum_probs=33.7
Q ss_pred HHhhhccCcCHHHHHHHHHcCCCCHHHHhhc--cCcchHHHhhHhhHHhhccCC-------------C-HHHHHHHHHHH
Q 012388 295 SLFGEVWGIGPATAQKLYEKGHRTLDDLKNE--DSLTHSQRLGLKYFDDIKTRI-------------P-RHEVEQMERLL 358 (464)
Q Consensus 295 ~lf~~I~GvGpktA~~ly~~GirtledL~~~--~~L~~~q~~Glk~~ed~~~~i-------------~-r~Ea~~i~~iv 358 (464)
..|.+|+||||++|++|++.||.|+++|..+ ..|..+.+||.+..+.|...+ + ..++..+.+-|
T Consensus 15 ~~L~~IpGIGpk~a~~Ll~~gf~sve~L~~a~~~eL~~v~GIG~ktAe~I~~~l~~~~~~~~r~~~~~~~~~a~~~a~~i 94 (241)
T 1vq8_Y 15 TELTDISGVGPSKAESLREAGFESVEDVRGADQSALADVSGIGNALAARIKADVGGLEVESETEAEVEEEGGEEAPDEDV 94 (241)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHhcCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHhccCCCHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHH
Confidence 3456999999999999999999999999754 468899999988888876544 3 33333332222
Q ss_pred HHHhhhcCCC-E-EEEEcccccccC---------CcCC-CccEEE----eCCCcchhhhHHHHHHHHHHhcccccc
Q 012388 359 QKAGEEVLPE-V-IILCGGSYRRGK---------ASCG-DLDVVI----MHPDRKSHKGFLSKYVKKLKEMKFLRE 418 (464)
Q Consensus 359 ~~~~~~~~p~-~-~v~~~GsyRRgk---------e~~g-DvDiLi----t~~d~~~~~~~l~~lv~~L~~~g~l~~ 418 (464)
..... -.|+ + .++++||+||.+ ++++ |+|+++ +...+.- +-.++..+++..+.+..
T Consensus 95 ~~~l~-~~~~~~~~~~~ags~RR~~~~~~~~~~~efvr~d~d~~~~~~~~wrkP~g---~d~~vr~~f~g~~~~~~ 166 (241)
T 1vq8_Y 95 ETELQ-ARGLTEKTPDLSDEDARLLTQRHRVGKPQFNRQDHHKKKRVSTSWRKPRG---QLSKQRRGIKGKGDTVE 166 (241)
T ss_dssp -CCEE-ECSCTTCCCCCCHHHHHHHHHHHHHCCCCCCCTTGGGCTTSCSSCCCCCC---TTCTTTTTCTTSCCCCC
T ss_pred HHHHH-hCCCCcCceecChHHHHHHHHhcccCCCCeeccchhheeecccCcCCCCC---ccHHHHHHHhCCCCCCc
Confidence 22222 2455 3 789999999999 9999 999999 5444431 11224444554444443
No 37
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A
Probab=98.55 E-value=6.6e-08 Score=91.18 Aligned_cols=83 Identities=13% Similarity=0.265 Sum_probs=61.1
Q ss_pred CCCCeEEEEecCCCCchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHHhhhccCccccccchHHHHHhc
Q 012388 18 IFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDSLRL 97 (464)
Q Consensus 18 ~F~g~~vy~~~~~~g~~R~~~l~~~i~~~Gg~V~~~ls~~VTHVV~~~~~~~~~~l~~~~~~~~~~~iV~~~Wl~ec~k~ 97 (464)
...+++|.|. |+... .+++.++.+||.+++.+++ +||+|+....+-.+.+. +...+.+||+.+||.+|+++
T Consensus 9 ~~~~~~v~~s--G~~~~---~~~~~i~~lGg~~~~~~~~-~THlI~~~~~rt~K~l~---a~~~g~~IV~~~Wl~~~~~~ 79 (209)
T 2etx_A 9 ESTAPKVLFT--GVVDA---RGERAVLALGGSLAGSAAE-ASHLVTDRIRRTVKFLC---ALGRGIPILSLDWLHQSRKA 79 (209)
T ss_dssp ---CCEEEEC--SSCCH---HHHHHHHHTTCEECSSTTT-CSEEECSSCCCSHHHHH---HHHHTCCEECTHHHHHHHHH
T ss_pred cCCCcEEEEe--CCCcH---HHHHHHHHCCCEEeCCCCC-ceEEEECCCCCCHHHHH---HHhcCCccccHHHHHHHHHc
Confidence 4677888875 44443 2489999999999999875 99999976443222222 11236789999999999999
Q ss_pred CCCCCccccccc
Q 012388 98 GEKVSEDLYRIK 109 (464)
Q Consensus 98 g~lvdee~y~l~ 109 (464)
|+.|||+.|.+.
T Consensus 80 ~~~l~e~~y~~~ 91 (209)
T 2etx_A 80 GFFLPPDEYVVT 91 (209)
T ss_dssp TSCCCSGGGBCC
T ss_pred CCCCChhhcccc
Confidence 999999999885
No 38
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A*
Probab=98.47 E-value=2.7e-07 Score=91.89 Aligned_cols=85 Identities=15% Similarity=0.244 Sum_probs=67.3
Q ss_pred CCCCCCeEEEEecCCCCchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHHhhhccCccccccchHHHHH
Q 012388 16 NGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDSL 95 (464)
Q Consensus 16 ~~~F~g~~vy~~~~~~g~~R~~~l~~~i~~~Gg~V~~~ls~~VTHVV~~~~~~~~~~l~~~~~~~~~~~iV~~~Wl~ec~ 95 (464)
...|.|++|.+. |+....+..+.+++..+||++.+.++.++||||+.+... .+...+...+.+||+.+||.+||
T Consensus 103 ~~~l~g~~~~~t--G~~~~~r~~l~~~i~~~GG~v~~~~t~~tTHLI~~~~~t----~Ky~~A~~~gi~IV~~~Wl~~c~ 176 (298)
T 3olc_X 103 NMVMSDVTISCT--SLEKEKREEVHKYVQMMGGRVYRDLNVSVTHLIAGEVGS----KKYLVAANLKKPILLPSWIKTLW 176 (298)
T ss_dssp CCTTTTCEEEEE--SCCHHHHHHHHHHHHHTTCEECSSCCTTCCEEEESSSCS----HHHHHHHHTTCCEECHHHHHHHH
T ss_pred ccccCCeEEEeC--CCcHHhHHHHHHHHHHCCCEEecCcCCCeeEEEEeCCCC----hHHHHHHHCCCeEeeHHHHHHHH
Confidence 678999999996 455456778999999999999999999999999976532 11122223478999999999999
Q ss_pred hcCCCCCcccc
Q 012388 96 RLGEKVSEDLY 106 (464)
Q Consensus 96 k~g~lvdee~y 106 (464)
+.|+.++..+|
T Consensus 177 ~~~~~~~~~~~ 187 (298)
T 3olc_X 177 EKSQEKKITRY 187 (298)
T ss_dssp HHHHTTCCSSG
T ss_pred HcCCcCCcccc
Confidence 99998876554
No 39
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3
Probab=98.46 E-value=2.4e-07 Score=87.94 Aligned_cols=92 Identities=16% Similarity=0.259 Sum_probs=60.6
Q ss_pred CCCCCCeEEEEecCCCCchHHHHHHHHHHhcCCEEEeecCC-----CccEEEE-cCChHHHHHHHHHhh-hccCcccccc
Q 012388 16 NGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSK-----KVTHVLA-MDLEALLQQVSKQHL-ARFKGSVIRY 88 (464)
Q Consensus 16 ~~~F~g~~vy~~~~~~g~~R~~~l~~~i~~~Gg~V~~~ls~-----~VTHVV~-~~~~~~~~~l~~~~~-~~~~~~iV~~ 88 (464)
..+|.|+.+||.+..... ....|+.+++.+||+|+..+.. +.||+|+ .+.... +....+.+ ...++++|+.
T Consensus 115 ~~lF~g~~~~~~~~~~~~-~~~~l~~li~~~GG~v~~~~~~~~~~~~~~~~vvv~~~~~~-~~~~~~~l~~~~~i~iVs~ 192 (229)
T 1l0b_A 115 EKLFEGLQIYCCEPFTNM-PKDELERMLQLCGASVVKELPLLTRDTGAHPIVLVQPSAWT-EDNDCPDIGQLCKGRLVMW 192 (229)
T ss_dssp --CCTTCEEEECSCCSSS-CHHHHHHHHHHTTCEEECSSSCGGGCCSSCCEEEEC--------------------CEEET
T ss_pred hhhhcCceEEEEecCCCC-CHHHHHHHHHHCCCEEeCCcccccccCCCceEEEEcCCccc-hhhhHHHHHHHcCCeEeeh
Confidence 479999999998653333 3567899999999999998854 3688554 432210 00111111 1236899999
Q ss_pred chHHHHHhcCCCCCccccccc
Q 012388 89 QWLEDSLRLGEKVSEDLYRIK 109 (464)
Q Consensus 89 ~Wl~ec~k~g~lvdee~y~l~ 109 (464)
+||.+|+..+++++++.|.+.
T Consensus 193 ~WlldsI~~~~~~~~~~Y~l~ 213 (229)
T 1l0b_A 193 DWVLDSISVYRCRDLDAYLVQ 213 (229)
T ss_dssp HHHHHHHHTTSCCCGGGGBCC
T ss_pred hHHHHHHhcCCcCCccceEcc
Confidence 999999999999999999886
No 40
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A*
Probab=98.38 E-value=3.4e-07 Score=88.44 Aligned_cols=90 Identities=11% Similarity=0.126 Sum_probs=66.7
Q ss_pred CCCCeEEEEecCC-CCchHHHHHHHHHHhcCCEEEee-----c--CC-------------------CccEEEEcCChHHH
Q 012388 18 IFAGMRVFLVEKG-VQNRRLQIWRQKLVQMGATVEEK-----L--SK-------------------KVTHVLAMDLEALL 70 (464)
Q Consensus 18 ~F~g~~vy~~~~~-~g~~R~~~l~~~i~~~Gg~V~~~-----l--s~-------------------~VTHVV~~~~~~~~ 70 (464)
+|+||.++|.... ....+..-|+++|.++||+|.+. + .. +.||+|+....+-.
T Consensus 2 lF~g~~F~ls~~~~~~~~~k~~L~~~I~~~GG~v~~~g~~~lf~~~~~~~~~~~~~~k~~~~~~~~~~t~lia~~~~rt~ 81 (241)
T 2vxb_A 2 IFDDCVFAFSGPVHEDAYDRSALETVVQDHGGLVLDTGLRPLFNDPFKSKQKKLRHLKPQKRSKSWNQAFVVSDTFSRKV 81 (241)
T ss_dssp TTTTEEEEECCCSSTTSSCHHHHHHHHHHTTCEECTTCSGGGBCCSCC----CCCSCCBCGGGGGCSEEEEECSSCCCCH
T ss_pred CCCCcEEEEecCCCCchhhHHHHHHHHHHCCCEEecCcchhhccCccccccccccccccccccccccceEEEcCCCCCcH
Confidence 7999999997641 22234567999999999999886 2 11 35999997654322
Q ss_pred HHHHHHhhhccCccccccchHHHHHhcCCCCCcccccccc
Q 012388 71 QQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKL 110 (464)
Q Consensus 71 ~~l~~~~~~~~~~~iV~~~Wl~ec~k~g~lvdee~y~l~~ 110 (464)
+.+. +...+..||+.+||.+|+++|+++|+++|.+..
T Consensus 82 K~~~---ala~gipiV~~~Wi~dc~~~~~~~~~~~ylL~~ 118 (241)
T 2vxb_A 82 KYLE---ALAFNIPCVHPQFIKQCLKMNRVVDFSPYLLAS 118 (241)
T ss_dssp HHHH---HHHHTCCEECTHHHHHHHHHTSCCCSGGGBBEE
T ss_pred HHHH---HHHcCCCEecHHHHHHHHHcCCcCChhhccCCC
Confidence 2222 112367999999999999999999999999963
No 41
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A
Probab=98.30 E-value=4.4e-07 Score=84.91 Aligned_cols=94 Identities=19% Similarity=0.207 Sum_probs=64.7
Q ss_pred CCCCCCCeEEEEecCCCCchHHHHHHHHHHhcCCEEEeecCC-----CccEEEEcCChHHHHHHHHH-hhhccCcccccc
Q 012388 15 SNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSK-----KVTHVLAMDLEALLQQVSKQ-HLARFKGSVIRY 88 (464)
Q Consensus 15 ~~~~F~g~~vy~~~~~~g~~R~~~l~~~i~~~Gg~V~~~ls~-----~VTHVV~~~~~~~~~~l~~~-~~~~~~~~iV~~ 88 (464)
...+|.|+.+||....... .+..|+.+++.+||+|++.+.. +++|||+.+.+......+.. .....+.++|+.
T Consensus 112 ~~~lF~g~~~~~~~~~~~~-~~~~l~~li~~~GG~v~~~~~~~~~~~~~~~ivi~~~~~~~~~~~~~~~a~~~~~~iV~~ 190 (214)
T 1t15_A 112 DRKIFRGLEICCYGPFTNM-PTDQLEWMVQLCGASVVKELSSFTLGTGVHPIVVVQPDAWTEDNGFHAIGQMCEAPVVTR 190 (214)
T ss_dssp TSCTTTTCEEEECSCCSSS-CHHHHHHHHHHTTCEECCSGGGCCCSTTCCEEEEECGGGCSSCGGGGSSTTTCSSCEEEH
T ss_pred CCcccCCCEEEEEecCCCC-CHHHHHHHHHHCCCEEecCccccccCCCCccEEEECCCcccchhhHHHHHHhcCCcEEec
Confidence 4579999999998643333 3556899999999999998753 22346554322100000111 112236899999
Q ss_pred chHHHHHhcCCCCCccccccc
Q 012388 89 QWLEDSLRLGEKVSEDLYRIK 109 (464)
Q Consensus 89 ~Wl~ec~k~g~lvdee~y~l~ 109 (464)
+||.||+..++++|++.|.+.
T Consensus 191 ~Wi~dsi~~~~~l~~~~Y~l~ 211 (214)
T 1t15_A 191 EWVLDSVALYQCQELDTYLIP 211 (214)
T ss_dssp HHHHHHHHHTSCCCSGGGBCC
T ss_pred cHHHHhHhhcCcCCCcceeec
Confidence 999999999999999999874
No 42
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B
Probab=98.29 E-value=5.5e-07 Score=87.81 Aligned_cols=87 Identities=21% Similarity=0.341 Sum_probs=64.3
Q ss_pred CCCCCCeEEEEecCCCCchHHHHHHHHHHhcCCEEEeecC---------CCccEEEEcCCh-HHHHHHHHHhhhccCccc
Q 012388 16 NGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLS---------KKVTHVLAMDLE-ALLQQVSKQHLARFKGSV 85 (464)
Q Consensus 16 ~~~F~g~~vy~~~~~~g~~R~~~l~~~i~~~Gg~V~~~ls---------~~VTHVV~~~~~-~~~~~l~~~~~~~~~~~i 85 (464)
..+|+|++||+.+...+ ...+++..+++.+||.|+..+. .+.+|||+.+.+ .. ...+ .+...+++|
T Consensus 153 ~~LF~G~~I~i~~~~~~-~~~~~~~~Il~~~Ga~vv~~~~s~~~~~d~~~~~~~viv~d~~~~~-~~~~--~a~~~~i~i 228 (259)
T 1kzy_C 153 ENPFQNLKVLLVSDQQQ-NFLELWSEILMTGGAASVKQHHSSAHNKDIALGVFDVVVTDPSCPA-SVLK--CAEALQLPV 228 (259)
T ss_dssp CCTTTTCEEEEEESCTT-TTHHHHHHHHHHTTCSEEEEEESSSSCCCSCGGGCSEEEECTTCCH-HHHH--HHHHHTCCE
T ss_pred CCCCCCeEEEEecCCCC-CHHHHHHHHHHhcCCEEEeccccchhhhhccCCCCeEEEECCCChH-HHHH--HHHhcCCCE
Confidence 57999999999875322 3567899999999999988763 257777775533 11 1111 122346899
Q ss_pred cccchHHHHHhcCCCCCcccc
Q 012388 86 IRYQWLEDSLRLGEKVSEDLY 106 (464)
Q Consensus 86 V~~~Wl~ec~k~g~lvdee~y 106 (464)
|+.+||.+|+..|+++|++.|
T Consensus 229 Vs~EWv~~sI~~~~ll~~~~h 249 (259)
T 1kzy_C 229 VSQEWVIQCLIVGERIGFKQH 249 (259)
T ss_dssp ECHHHHHHHHHHTSCCCTTSS
T ss_pred ecHHHHHHHHHhCCcCCCCcC
Confidence 999999999999999998764
No 43
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A*
Probab=98.22 E-value=5.6e-07 Score=85.81 Aligned_cols=81 Identities=17% Similarity=0.314 Sum_probs=59.9
Q ss_pred CCeEEEEecCCCCchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHHhhhccCccccccchHHHHHhcCC
Q 012388 20 AGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDSLRLGE 99 (464)
Q Consensus 20 ~g~~vy~~~~~~g~~R~~~l~~~i~~~Gg~V~~~ls~~VTHVV~~~~~~~~~~l~~~~~~~~~~~iV~~~Wl~ec~k~g~ 99 (464)
++++|.|. |+.... ..+.++.+||.|++.++ .+||+|+....+-...+ .+...+.+||+.+||.+|+++|+
T Consensus 7 ~~~~v~fS--G~~~~~---~~~~i~~lGg~v~~~~~-~~THlV~~~~~RT~K~l---~Aia~g~~IVs~~Wl~~~~~~~~ 77 (220)
T 3l41_A 7 KRVYITFT--GYDKKP---SIDNLKKLDMSITSNPS-KCTHLIAPRILRTSKFL---CSIPYGPCVVTMDWINSCLKTHE 77 (220)
T ss_dssp CCEEEEEC--SCSSCC---CCGGGGGGTEEECSCTT-TCSEEECSSCCCBHHHH---HHGGGCCEEECHHHHHHHHHHTS
T ss_pred ceEEEEEe--ccCCCC---CcchHhhcceeeccCch-hhhhhhhhhHhhhccee---ecCCCCCeEEEhHHHHhhhhhhh
Confidence 34555554 443332 27899999999999875 59999997654432222 22234789999999999999999
Q ss_pred CCCccccccc
Q 012388 100 KVSEDLYRIK 109 (464)
Q Consensus 100 lvdee~y~l~ 109 (464)
.+||+.|.+.
T Consensus 78 ~l~e~~y~l~ 87 (220)
T 3l41_A 78 IVDEEPYLLN 87 (220)
T ss_dssp CCCSGGGBCC
T ss_pred ccccCccccC
Confidence 9999999985
No 44
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=98.19 E-value=1.7e-07 Score=91.25 Aligned_cols=89 Identities=12% Similarity=0.163 Sum_probs=62.1
Q ss_pred CCCCCCeEEEEecCCC-----CchHHHHHHHHHHhcCCEEEeecCCC-----ccEEEEcCChHHHHHHHHHhhhccCccc
Q 012388 16 NGIFAGMRVFLVEKGV-----QNRRLQIWRQKLVQMGATVEEKLSKK-----VTHVLAMDLEALLQQVSKQHLARFKGSV 85 (464)
Q Consensus 16 ~~~F~g~~vy~~~~~~-----g~~R~~~l~~~i~~~Gg~V~~~ls~~-----VTHVV~~~~~~~~~~l~~~~~~~~~~~i 85 (464)
..+|+||++|++.... ....++-|+++++.+||+++...... .||||++.... +...+...+..|
T Consensus 3 s~lF~g~~f~v~~~~~~p~~~~~~~~~~L~~li~~~GG~~~~~~~~~t~~~~~~~iI~~~~t~-----k~~~~~~~~~~v 77 (264)
T 1z56_C 3 SNIFAGLLFYVLSDYVTEDTGIRITRAELEKTIVEHGGKLIYNVILKRHSIGDVRLISCKTTT-----ECKALIDRGYDI 77 (264)
T ss_dssp CCCCCTTCCCCSEEEECCCCCSSSSCCCTHHHHHHHHTTSCCCSSCCCCCSSCCEEEECSCCG-----GGGGGTTTTCCC
T ss_pred cccCCCcEEEEEcCCCCccccccCCHHHHHHHHHHcCCEEeecCCCCccCccceEEEecCCcH-----HHHHHHhCCCCE
Confidence 5799999999863211 11123568999999999887543222 47888875432 112222224689
Q ss_pred cccchHHHHHhcCCCCCccccccc
Q 012388 86 IRYQWLEDSLRLGEKVSEDLYRIK 109 (464)
Q Consensus 86 V~~~Wl~ec~k~g~lvdee~y~l~ 109 (464)
|+.+||.+|+++|++|+.++|.+.
T Consensus 78 V~p~Wv~dci~~~~llp~~~y~~~ 101 (264)
T 1z56_C 78 LHPNWVLDCIAYKRLILIEPNYCF 101 (264)
T ss_dssp BCSSTTHHHHSSCSCCCCCSCBSC
T ss_pred EechHHHHHhhcCCCCCCChHHhh
Confidence 999999999999999999998765
No 45
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A*
Probab=98.08 E-value=2.1e-06 Score=80.49 Aligned_cols=83 Identities=12% Similarity=0.185 Sum_probs=61.6
Q ss_pred CCCCCCCeEEEEecCCCCchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHHhhhccCccccccchHHHH
Q 012388 15 SNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDS 94 (464)
Q Consensus 15 ~~~~F~g~~vy~~~~~~g~~R~~~l~~~i~~~Gg~V~~~ls~~VTHVV~~~~~~~~~~l~~~~~~~~~~~iV~~~Wl~ec 94 (464)
...+|.|+.+|++....... ++.|+.+++.+||+|+..+. ..+ |++.+... .......+|+.+||.||
T Consensus 116 ~~~LF~g~~~~~v~~~~~~~-~~~L~~lI~~~GG~v~~~~~-~~~-iiI~~~~~---------~~~~~~~~V~p~Wi~Ds 183 (199)
T 3u3z_A 116 RGTLFADQPVMFVSPASSPP-VAKLCELVHLCGGRVSQVPR-QAS-IVIGPYSG---------KKKATVKYLSEKWVLDS 183 (199)
T ss_dssp CCCTTTTSCCEEECTTCSSC-HHHHHHHHHHTTCCBCSSGG-GCS-EEESCCCS---------CCCTTCEEECHHHHHHH
T ss_pred cchhhCCCeEEEECCCCCCC-HHHHHHHHHHcCCEEeccCC-CCE-EEEeCCch---------hccCCCcEEChhHHHHH
Confidence 35899999766665433333 36799999999999999884 344 44444322 11235689999999999
Q ss_pred HhcCCCCCccccccc
Q 012388 95 LRLGEKVSEDLYRIK 109 (464)
Q Consensus 95 ~k~g~lvdee~y~l~ 109 (464)
+.+++++|.+.|.+.
T Consensus 184 I~~~~llp~~~Y~~~ 198 (199)
T 3u3z_A 184 ITQHKVCAPENYLLS 198 (199)
T ss_dssp HHHTSCCCGGGGBCC
T ss_pred HHcCCcCChHhccCC
Confidence 999999999999874
No 46
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A*
Probab=98.04 E-value=4.9e-06 Score=80.26 Aligned_cols=80 Identities=11% Similarity=0.205 Sum_probs=61.2
Q ss_pred CCCCCCeEEEEecCCCCch-----------HHHHHHHHHHhcCCEE--EeecCCCccEEEEcCChHHHHHHHHHhhhccC
Q 012388 16 NGIFAGMRVFLVEKGVQNR-----------RLQIWRQKLVQMGATV--EEKLSKKVTHVLAMDLEALLQQVSKQHLARFK 82 (464)
Q Consensus 16 ~~~F~g~~vy~~~~~~g~~-----------R~~~l~~~i~~~Gg~V--~~~ls~~VTHVV~~~~~~~~~~l~~~~~~~~~ 82 (464)
..+|.|++|||+...-... .++.+..+++.+||.+ ++.+....+|+|+.+... .....+
T Consensus 149 ~~Lf~g~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~Ga~~~~v~~~~~~~~d~v~~~~~~--------~~~~~~ 220 (241)
T 2vxb_A 149 KGPLFGKKILFIIPEAKSWQKKIENTEQGQKALAHVYHALALGADVEIRPNVAHLECDLILTMDGN--------IVDETN 220 (241)
T ss_dssp CCTTTTCEEEECCCC------------CHHHHHHHHHHHHHTTCEEECCSCCSSCCCSEEECSSSC--------CCSSCS
T ss_pred CcCCCCcEEEEEeCCCcccccccccccccchHHHHHHHHHHcCCceecccccccCCccEEEECCcc--------ccccCC
Confidence 5899999999986422211 2578999999999999 555566789999976432 123447
Q ss_pred ccccccchHHHHHhcCCCCCc
Q 012388 83 GSVIRYQWLEDSLRLGEKVSE 103 (464)
Q Consensus 83 ~~iV~~~Wl~ec~k~g~lvde 103 (464)
++||+.+||.+|+..|+++|+
T Consensus 221 ~~iV~~eWv~~~i~~g~~l~~ 241 (241)
T 2vxb_A 221 CPVVDPEWIVECLISQSDIST 241 (241)
T ss_dssp SCEECHHHHHHHHHHTSCTTC
T ss_pred CCEecHHHHHHHHHhceecCC
Confidence 899999999999999999974
No 47
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A
Probab=97.92 E-value=1.3e-05 Score=75.38 Aligned_cols=89 Identities=11% Similarity=0.117 Sum_probs=63.7
Q ss_pred CCCCCeEEEEecCCCCchHHHHHHHHHHhcCCEEEeecCCC--ccEEEEcCChHHHHHHHHHhhhccCccccccchHHHH
Q 012388 17 GIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKK--VTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDS 94 (464)
Q Consensus 17 ~~F~g~~vy~~~~~~g~~R~~~l~~~i~~~Gg~V~~~ls~~--VTHVV~~~~~~~~~~l~~~~~~~~~~~iV~~~Wl~ec 94 (464)
.+|.|+++||.+. ... ....|+.+++.+||+|...+... -+|||+...+.... +. .....+.++|+.+||.+|
T Consensus 114 ~lF~g~~~~~~~~-~~~-~~~~l~~li~~~GG~v~~~~~~~~~~~~ivI~~~~d~~~-~~--~~~~~~i~vvs~eWi~~s 188 (209)
T 2etx_A 114 RLLEGYEIYVTPG-VQP-PPPQMGEIISCCGGTYLPSMPRSYKPQRVVITCPQDFPH-CS--IPLRVGLPLLSPEFLLTG 188 (209)
T ss_dssp CTTTTCEEEECTT-CSS-CHHHHHHHHHHTTCEECSSCCCSCCTTEEEECCGGGGGG-CH--HHHHHTCCEECTHHHHHH
T ss_pred CCcCCcEEEEeCC-CCC-CHHHHHHHHHHCCCEEECCCCCCCCCceEEEECcccHHH-HH--HHHHCCCeEEcHHHHHHH
Confidence 7999999999764 222 24578899999999999887644 37888753322111 11 111236789999999999
Q ss_pred HhcCCCCCccccccccC
Q 012388 95 LRLGEKVSEDLYRIKLD 111 (464)
Q Consensus 95 ~k~g~lvdee~y~l~~~ 111 (464)
+..+++ |.+.|.+..+
T Consensus 189 I~~q~l-d~e~y~l~~~ 204 (209)
T 2etx_A 189 VLKQEA-KPEAFVLSPL 204 (209)
T ss_dssp HHHTCC-CGGGGBCCTT
T ss_pred HHhccc-ChHHheecCC
Confidence 999775 9999998643
No 48
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A
Probab=97.76 E-value=1.4e-05 Score=74.82 Aligned_cols=85 Identities=12% Similarity=0.068 Sum_probs=58.4
Q ss_pred CCCCCCeEEEEecCCCCchHHHHHHHHHHhcCCEEEeecC-----------------------CCccEEEEcCChHHHHH
Q 012388 16 NGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLS-----------------------KKVTHVLAMDLEALLQQ 72 (464)
Q Consensus 16 ~~~F~g~~vy~~~~~~g~~R~~~l~~~i~~~Gg~V~~~ls-----------------------~~VTHVV~~~~~~~~~~ 72 (464)
..+|.|+.+||.+.. ....++.|+.+++.+||+|++... ..+||.|+.+....
T Consensus 102 ~~lF~g~~~~l~~~~-~~~~~~~l~~lI~~~GG~v~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~~t~~iv~~~~~~--- 177 (210)
T 2nte_A 102 PKLFDGCYFYLWGTF-KHHPKDNLIKLVTAGGGQILSRKPKPDSDVTQTINTVAYHARPDSDQRFCTQYIIYEDLCN--- 177 (210)
T ss_dssp CCTTTTCEEEECSCC-SSSCHHHHHHHHHHTTCEEESSCCCGGGCGGGSSCCCCTTSCTTCGGGTCCEEEEECSCSS---
T ss_pred ccccCceEEEEeccC-CCCCHHHHHHHHHHCCCEEEecCCCCccccccccceeeeccCCCcccccceEEEEeccccc---
Confidence 469999999998642 223456899999999999996321 23577776442210
Q ss_pred HHHHhhhccCccccccchHHHHHhcCCCCCcc
Q 012388 73 VSKQHLARFKGSVIRYQWLEDSLRLGEKVSED 104 (464)
Q Consensus 73 l~~~~~~~~~~~iV~~~Wl~ec~k~g~lvdee 104 (464)
.........+.++|+.+||.||+..++++|.+
T Consensus 178 ~~~~~~~~~~v~~V~~~Wl~dcI~~~~llp~~ 209 (210)
T 2nte_A 178 YHPERVRQGKVWKAPSSWFIDCVMSFELLPLD 209 (210)
T ss_dssp CCCSCSEETTEEEEEHHHHHHHHHHTSCCCSC
T ss_pred cCHHHHhccCcccccHHHHHHHHHhCeeccCC
Confidence 00001112356799999999999999999875
No 49
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=97.71 E-value=2.5e-05 Score=64.88 Aligned_cols=57 Identities=23% Similarity=0.263 Sum_probs=46.8
Q ss_pred chhhhcCCCCCCHHHHHHHHHHHH-hCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHcCCCCHHHH
Q 012388 252 SADQVKGLPGIGKSMQDHIQEIVT-TGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL 322 (464)
Q Consensus 252 s~~~l~~lpgIG~~ia~kI~Eil~-tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~GirtledL 322 (464)
+.++|..|||||+.+|.+|.+..+ +|.+..+++ |.+|+|||+++|++|++.|+ ++++
T Consensus 38 ~~~~L~~ipGIG~~~A~~Il~~r~~~g~f~s~ed------------L~~v~Gig~k~~~~l~~~g~--ld~~ 95 (98)
T 2edu_A 38 SARDLRSLQRIGPKKAQLIVGWRELHGPFSQVED------------LERVEGITGKQMESFLKANI--LGLA 95 (98)
T ss_dssp CHHHHHHSTTCCHHHHHHHHHHHHHHCCCSSGGG------------GGGSTTCCHHHHHHHHHHHH--HHHH
T ss_pred CHHHHHHCCCCCHHHHHHHHHHHHhcCCcCCHHH------------HHhCCCCCHHHHHHHHHCcC--hhcc
Confidence 346789999999999999999986 487755554 56999999999999999885 4444
No 50
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=97.63 E-value=0.00026 Score=60.06 Aligned_cols=81 Identities=12% Similarity=0.063 Sum_probs=61.3
Q ss_pred CCCCCCCCeEEEEecCCCCchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHHhhhccCccccccchHHH
Q 012388 14 DSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLED 93 (464)
Q Consensus 14 ~~~~~F~g~~vy~~~~~~g~~R~~~l~~~i~~~Gg~V~~~ls~~VTHVV~~~~~~~~~~l~~~~~~~~~~~iV~~~Wl~e 93 (464)
.....|.|.+|.|-+.--... ++-++.++..+||.|.+.++..++|||+.++... -+..++...+.+||+-+||.+
T Consensus 28 ~~~~~l~G~~~v~TG~l~~~~-R~e~~~~i~~~Gg~v~~sVSkkTd~LV~G~~~g~---sK~~kA~~lgI~Ii~E~~f~~ 103 (109)
T 2k6g_A 28 GAENCLEGLIFVITGVLESIE-RDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ---SKSDKAAALGTKIIDEDGLLN 103 (109)
T ss_dssp CCTTTTTTCEEEEESBCSSCC-HHHHHHHHHHTTCEEESSCCTTCCEEEECBCCCH---HHHHHHHHHTCEEECHHHHHH
T ss_pred CCCCCCCCCEEEEeeeCCCCC-HHHHHHHHHHcCCEeeCcccCCceEEEECCCCCh---HHHHHHHHcCCeEEeHHHHHH
Confidence 344579999999987532323 4568999999999999999999999999765321 122233345789999999999
Q ss_pred HHhcC
Q 012388 94 SLRLG 98 (464)
Q Consensus 94 c~k~g 98 (464)
.+..+
T Consensus 104 ll~~~ 108 (109)
T 2k6g_A 104 LIRNL 108 (109)
T ss_dssp HHHHT
T ss_pred HHHhC
Confidence 99765
No 51
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=97.56 E-value=0.00013 Score=62.36 Aligned_cols=79 Identities=9% Similarity=0.118 Sum_probs=56.7
Q ss_pred CCCCCCeEEEEecCCCCchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHHhhhccCccccccchHHHHH
Q 012388 16 NGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLEDSL 95 (464)
Q Consensus 16 ~~~F~g~~vy~~~~~~g~~R~~~l~~~i~~~Gg~V~~~ls~~VTHVV~~~~~~~~~~l~~~~~~~~~~~iV~~~Wl~ec~ 95 (464)
...|.|++|.|-++ +... ++-+++++..+||.|...++..+||||+.++-.. ..-+..++...+.+||+-+||.++-
T Consensus 8 ~~~l~G~~~ViTG~-l~~~-R~e~k~~ie~~Ggkv~~sVskkT~~lV~g~~~e~-~gsKl~kA~~lgI~IvsE~~l~~~~ 84 (113)
T 2cok_A 8 DKPLSNMKILTLGK-LSRN-KDEVKAMIEKLGGKLTGTANKASLCISTKKEVEK-MNKKMEEVKEANIRVVSEDFLQDVS 84 (113)
T ss_dssp CCSSSSCEEEECSC-CSSC-HHHHHHHHHHTTCEEESCSTTCSEEECCHHHHHH-CCHHHHHHHHTTCCEECTHHHHHHH
T ss_pred CCCcCCCEEEEEec-CCCC-HHHHHHHHHHCCCEEcCccccCccEEEECCCCCC-CChHHHHHHHCCCcEEeHHHHHHHH
Confidence 45699999999876 3334 4678999999999999999999999999732110 0122333445688999999955444
Q ss_pred hc
Q 012388 96 RL 97 (464)
Q Consensus 96 k~ 97 (464)
..
T Consensus 85 ~~ 86 (113)
T 2cok_A 85 AS 86 (113)
T ss_dssp SC
T ss_pred hh
Confidence 33
No 52
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=97.54 E-value=0.0001 Score=60.60 Aligned_cols=78 Identities=12% Similarity=0.124 Sum_probs=61.0
Q ss_pred CCCCCCCCeEEEEecCCCCchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHHhhhccCccccccchHHH
Q 012388 14 DSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLED 93 (464)
Q Consensus 14 ~~~~~F~g~~vy~~~~~~g~~R~~~l~~~i~~~Gg~V~~~ls~~VTHVV~~~~~~~~~~l~~~~~~~~~~~iV~~~Wl~e 93 (464)
++...|.|.+|.|-+.--. .++-++.++..+||.|...++..+||+|+.++.. -+..++...+.+||+-+||.+
T Consensus 3 ~~~~~l~G~~~v~TG~l~~--~R~e~~~~i~~~Gg~v~~sVskkt~~LV~g~~~g----sK~~kA~~lgI~Ii~E~~f~~ 76 (92)
T 1l7b_A 3 KGGEALKGLTFVITGELSR--PREEVKALLRRLGAKVTDSVSRKTSYLVVGENPG----SKLEKARALGVPTLTEEELYR 76 (92)
T ss_dssp CCCCSSTTCEEECSTTTTS--CHHHHHHHHHHTTCEEESCCSSSCCCBEECSSSS----TTHHHHHCSSSCCEEHHHHHH
T ss_pred CCCCCcCCcEEEEecCCCC--CHHHHHHHHHHcCCEEeCcccCCeeEEEeCCCCC----hHHHHHHHcCCcEEeHHHHHH
Confidence 3556799999999875333 4567899999999999999999999999976532 222334455889999999999
Q ss_pred HHhc
Q 012388 94 SLRL 97 (464)
Q Consensus 94 c~k~ 97 (464)
++..
T Consensus 77 ~l~~ 80 (92)
T 1l7b_A 77 LLEA 80 (92)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9864
No 53
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A*
Probab=97.39 E-value=0.00015 Score=69.56 Aligned_cols=91 Identities=22% Similarity=0.223 Sum_probs=66.0
Q ss_pred CCCCCCeEEEEecCCCCchHHHHHHHHHHhcCCEEEeecC----CCccEEEEcCChHHHHH--HHHHhhhccCccccccc
Q 012388 16 NGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLS----KKVTHVLAMDLEALLQQ--VSKQHLARFKGSVIRYQ 89 (464)
Q Consensus 16 ~~~F~g~~vy~~~~~~g~~R~~~l~~~i~~~Gg~V~~~ls----~~VTHVV~~~~~~~~~~--l~~~~~~~~~~~iV~~~ 89 (464)
..+|.|+.|||... ..+...|+++++.+||+|..... ...||++++-.....+. .....+...++++|+.+
T Consensus 133 ~~lF~g~~v~l~~~---~~~~~~l~~ii~agGg~vl~~~~~~~~~~~t~~~vd~~~~~~~~~~~~~~~~~~~~i~~v~~e 209 (235)
T 3al2_A 133 EGAFSGWKVILHVD---QSREAGFKRLLQSGGAKVLPGHSVPLFKEATHLFSDLNKLKPDDSGVNIAEAAAQNVYCLRTE 209 (235)
T ss_dssp SSTTTTCEEEEECC---HHHHHHHHHHHHHTTCEECSSCCGGGGGGCSEEEECC--------CCCHHHHHHTTCEEEETH
T ss_pred CCCCCCcEEEEecC---CCcHHHHHHHHHcCCcEEecCCCCCccccCceEEEecccCCccchhHHHHHHHHcCCcEEcHH
Confidence 47999999999864 35667899999999999987643 34799887532110000 11122223468999999
Q ss_pred hHHHHHhcCCCCCccccccc
Q 012388 90 WLEDSLRLGEKVSEDLYRIK 109 (464)
Q Consensus 90 Wl~ec~k~g~lvdee~y~l~ 109 (464)
||.+|+-..++.+.+.|.+.
T Consensus 210 wlld~i~~~~~~~~~~y~l~ 229 (235)
T 3al2_A 210 YIADYLMQESPPHVENYCLP 229 (235)
T ss_dssp HHHHHHHCSSCCCHHHHBCG
T ss_pred HHHHHHhcCCCCChhheEcc
Confidence 99999999999999999885
No 54
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.30 E-value=0.00067 Score=57.80 Aligned_cols=81 Identities=12% Similarity=0.080 Sum_probs=60.7
Q ss_pred CCCCCCCCCeEEEEecCCCCchHHHHHHHHHHhcCCEEEeecCCCccEEEEcCChHHHHHHHHHhhhccCccccccchHH
Q 012388 13 LDSNGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMDLEALLQQVSKQHLARFKGSVIRYQWLE 92 (464)
Q Consensus 13 ~~~~~~F~g~~vy~~~~~~g~~R~~~l~~~i~~~Gg~V~~~ls~~VTHVV~~~~~~~~~~l~~~~~~~~~~~iV~~~Wl~ 92 (464)
......|.|.+|.|-+.--... ++-++.++..+||.|...++..++|||+.++... -+..++...+.+||+-+||.
T Consensus 17 ~~~~~~l~G~~~v~TG~l~~~~-R~e~~~~i~~~Ggkv~~sVSkkTd~LV~G~~~g~---sKl~KA~~lgI~IisE~~f~ 92 (112)
T 2ebu_A 17 KGAENCLEGLIFVITGVLESIE-RDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQ---SKSDKAAALGTKIIDEDGLL 92 (112)
T ss_dssp CCCSSSSTTCEEEECSCCSSSC-HHHHHHHHHHTTCEECSSCCSSCCEEEECSSCCS---HHHHHHHHHTCEEEEHHHHH
T ss_pred CCCCCCcCCCEEEEeeeCCCCC-HHHHHHHHHHcCCEEeccccCCeeEEEecCCCCh---HHHHHHHHcCCeEEeHHHHH
Confidence 3344579999999987532323 4568999999999999999999999999765320 12223334478999999999
Q ss_pred HHHhc
Q 012388 93 DSLRL 97 (464)
Q Consensus 93 ec~k~ 97 (464)
+.+..
T Consensus 93 ~ll~~ 97 (112)
T 2ebu_A 93 NLIRT 97 (112)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 99975
No 55
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=97.28 E-value=6.6e-05 Score=59.06 Aligned_cols=46 Identities=33% Similarity=0.464 Sum_probs=36.7
Q ss_pred hhhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHH
Q 012388 253 ADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 313 (464)
Q Consensus 253 ~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~ 313 (464)
.++|..|||||++.|.+|.+.. +...++.|.+|+|+|++++++++.
T Consensus 26 ~~~L~~ipGIG~~~A~~Il~~r---------------~~~s~~eL~~v~Gig~k~~~~i~~ 71 (75)
T 2duy_A 26 LEELMALPGIGPVLARRIVEGR---------------PYARVEDLLKVKGIGPATLERLRP 71 (75)
T ss_dssp HHHHTTSTTCCHHHHHHHHHTC---------------CCSSGGGGGGSTTCCHHHHHHHGG
T ss_pred HHHHHhCCCCCHHHHHHHHHHc---------------ccCCHHHHHhCCCCCHHHHHHHHH
Confidence 4679999999999999998864 223344456999999999999864
No 56
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=97.01 E-value=0.00065 Score=56.38 Aligned_cols=47 Identities=15% Similarity=0.153 Sum_probs=39.5
Q ss_pred chhhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHH
Q 012388 252 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 313 (464)
Q Consensus 252 s~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~ 313 (464)
+.++|..|||||+.+|+.|-+ .|.+..+++| .+|+|+|+++.+++-.
T Consensus 24 s~~eL~~lpGIG~~~A~~IV~---~GpF~s~edL------------~~V~Gig~~~~e~l~~ 70 (97)
T 3arc_U 24 NIAAFIQYRGLYPTLAKLIVK---NAPYESVEDV------------LNIPGLTERQKQILRE 70 (97)
T ss_dssp CGGGGGGSTTCTTHHHHHHHH---HCCCSSGGGG------------GGCTTCCHHHHHHHHH
T ss_pred CHHHHhHCCCCCHHHHHHHHH---cCCCCCHHHH------------HhccCCCHHHHHHHHH
Confidence 568999999999999999887 6776666654 4999999999988854
No 57
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=96.93 E-value=0.00088 Score=58.46 Aligned_cols=46 Identities=13% Similarity=0.122 Sum_probs=38.6
Q ss_pred chhhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHH
Q 012388 252 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY 312 (464)
Q Consensus 252 s~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly 312 (464)
+.+++..|||||+..|++|- ++|-+..+|++ .+|+|||+|+.+.+-
T Consensus 61 ~~~eL~~LpGiGp~~A~~II---~~GpF~svedL------------~~V~GIg~k~~e~l~ 106 (134)
T 1s5l_U 61 NIAAFIQYRGLYPTLAKLIV---KNAPYESVEDV------------LNIPGLTERQKQILR 106 (134)
T ss_dssp CGGGGGGSTTCTHHHHHHHH---HTCCCSSGGGG------------GGCTTCCHHHHHHHH
T ss_pred CHHHHHHCCCCCHHHHHHHH---HcCCCCCHHHH------------HhCCCCCHHHHHHHH
Confidence 45789999999999999987 68888877765 489999999877763
No 58
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=96.63 E-value=0.0027 Score=49.14 Aligned_cols=51 Identities=20% Similarity=0.358 Sum_probs=38.4
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHH
Q 012388 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 313 (464)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~ 313 (464)
..|.++||||+.++..|.+.. |++.. +... ..+.|.+|+|||+++|..++.
T Consensus 14 ~~L~~i~giG~~~a~~Ll~~f--gs~~~---l~~a----~~~~L~~i~Gig~~~a~~i~~ 64 (75)
T 1x2i_A 14 LIVEGLPHVSATLARRLLKHF--GSVER---VFTA----SVAELMKVEGIGEKIAKEIRR 64 (75)
T ss_dssp HHHTTSTTCCHHHHHHHHHHH--CSHHH---HHHC----CHHHHTTSTTCCHHHHHHHHH
T ss_pred HHHcCCCCCCHHHHHHHHHHc--CCHHH---HHhC----CHHHHhcCCCCCHHHHHHHHH
Confidence 458899999999999888754 55444 3322 134567999999999999976
No 59
>2l42_A DNA-binding protein RAP1; BRCT domain, protein binding; NMR {Saccharomyces cerevisiae}
Probab=96.53 E-value=0.0024 Score=52.64 Aligned_cols=85 Identities=8% Similarity=0.131 Sum_probs=62.5
Q ss_pred CCCCCCCeEEEEecCCC---CchHHHHHHHHHHhcCCEEEeecCCCc--cEEEEcCChHHHHHHHHHhhhccCccccccc
Q 012388 15 SNGIFAGMRVFLVEKGV---QNRRLQIWRQKLVQMGATVEEKLSKKV--THVLAMDLEALLQQVSKQHLARFKGSVIRYQ 89 (464)
Q Consensus 15 ~~~~F~g~~vy~~~~~~---g~~R~~~l~~~i~~~Gg~V~~~ls~~V--THVV~~~~~~~~~~l~~~~~~~~~~~iV~~~ 89 (464)
....|+|+.+||....- ...-.+.|+++++.+||.|...+-.+. -+.|+..... ...+.|+..
T Consensus 8 ~~~vF~g~~Fyin~d~~a~ds~~d~d~L~~lI~~nGG~Vl~~lP~~s~~~~yVVSpyN~------------t~LpTVtpT 75 (106)
T 2l42_A 8 SGPPLSNMKFYLNRDADAHDSLNDIDQLARLIRANGGEVLDSKPRESKENVFIVSPYNH------------TNLPTVTPT 75 (106)
T ss_dssp SSCSSCCCCBEECCSSSCSSCSSTHHHHHHHHHTTTSCCCEECCCCCSSCCCCBCTTCC------------CSSSBCCTT
T ss_pred cCccccCcEEEEcCCCccchhhhHHHHHHHHHHhcCcEEhhhCcccccCCeEEEeCCCC------------CCCccccHH
Confidence 34569999999975311 112467899999999999999985332 2334432111 145789999
Q ss_pred hHHHHHhcCCCCCccccccccC
Q 012388 90 WLEDSLRLGEKVSEDLYRIKLD 111 (464)
Q Consensus 90 Wl~ec~k~g~lvdee~y~l~~~ 111 (464)
++..|+..++||+.+.|++...
T Consensus 76 YI~aC~~~nTLLnv~~YLvp~d 97 (106)
T 2l42_A 76 YIKACCQSNSLLNMENYLVPYD 97 (106)
T ss_dssp HHHHHHHSTTSCGGGGCCBCSC
T ss_pred HHHHHHhcCceecccccccCch
Confidence 9999999999999999999754
No 60
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=96.40 E-value=0.0019 Score=60.00 Aligned_cols=52 Identities=13% Similarity=0.209 Sum_probs=37.7
Q ss_pred hhcCCCCCCHHHHHHHHHHHHhCCchhh-HHHHhhchhHHHHHhhhccCcCHHHHHHHHH
Q 012388 255 QVKGLPGIGKSMQDHIQEIVTTGKLSKL-EHFEKDEKVRTISLFGEVWGIGPATAQKLYE 313 (464)
Q Consensus 255 ~l~~lpgIG~~ia~kI~Eil~tG~~~~l-e~l~~~~~~~~l~lf~~I~GvGpktA~~ly~ 313 (464)
.|.++||||+++|..|-..+.. ..+ +.+. ....+.|++|||||+|||++++.
T Consensus 73 ~L~~v~GIGpk~A~~iL~~f~~---~~l~~aI~----~~d~~~L~~vpGIG~K~A~rI~~ 125 (191)
T 1ixr_A 73 LLLSVSGVGPKVALALLSALPP---RLLARALL----EGDARLLTSASGVGRRLAERIAL 125 (191)
T ss_dssp HHHSSSCCCHHHHHHHHHHSCH---HHHHHHHH----TTCHHHHTTSTTCCHHHHHHHHH
T ss_pred HHhcCCCcCHHHHHHHHHhCCh---HHHHHHHH----hCCHHHHHhCCCCCHHHHHHHHH
Confidence 5778999999999987665432 222 2233 23456678999999999999975
No 61
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=96.38 E-value=0.0075 Score=65.96 Aligned_cols=87 Identities=17% Similarity=0.291 Sum_probs=64.8
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHcCCCCHHHHhhcc--CcchH
Q 012388 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHS 331 (464)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~GirtledL~~~~--~L~~~ 331 (464)
+++..|+|+|++.+++|.+=++.-+-..| ...+--| .|+|||+++|+.|.+. +.|++.|.++. .|...
T Consensus 480 ~~L~~l~gfG~Ksa~nLl~aIe~sk~~~l--------~R~L~al-gi~~VG~~~Ak~La~~-Fgsl~~l~~As~eeL~~i 549 (671)
T 2owo_A 480 GKLTGLERMGPKSAQNVVNALEKAKETTF--------ARFLYAL-GIREVGEATAAGLAAY-FGTLEALEAASIEELQKV 549 (671)
T ss_dssp HHHHTSTTCCHHHHHHHHHHHHHHTBCCH--------HHHHHHT-TCTTCCHHHHHHHHHH-HCSHHHHHTCCHHHHTTS
T ss_pred HHhhcccccchhHHHHHHHHHHHHhcCCh--------hheehhh-cccCccHHHHHHHHHH-cCCHHHHHhCCHHHHhhc
Confidence 67899999999999999866553222222 2344445 9999999999999886 77899998653 57788
Q ss_pred HHhhHhhHHhhccCCCHHH
Q 012388 332 QRLGLKYFDDIKTRIPRHE 350 (464)
Q Consensus 332 q~~Glk~~ed~~~~i~r~E 350 (464)
.++|.+..+.|...+.-++
T Consensus 550 ~GIG~~~A~sI~~ff~~~~ 568 (671)
T 2owo_A 550 PDVGIVVASHVHNFFAEES 568 (671)
T ss_dssp TTCCHHHHHHHHHHHTCHH
T ss_pred CCCCHHHHHHHHHHHHhHH
Confidence 8899888888776664443
No 62
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens}
Probab=96.34 E-value=0.0098 Score=56.19 Aligned_cols=85 Identities=9% Similarity=0.073 Sum_probs=57.3
Q ss_pred CCCCCCeEEEEecCCCCchHHHHHHHHHHhcCCEEEeecCC-------------CccEEEEcCChH-HHHHHHHHhhhcc
Q 012388 16 NGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSK-------------KVTHVLAMDLEA-LLQQVSKQHLARF 81 (464)
Q Consensus 16 ~~~F~g~~vy~~~~~~g~~R~~~l~~~i~~~Gg~V~~~ls~-------------~VTHVV~~~~~~-~~~~l~~~~~~~~ 81 (464)
..+|.|+.+|+.+.- ... .+.++.++..+||+|...+.. .-..||+.+.+. ..+.+ .+.
T Consensus 120 ~~LF~G~~f~it~~~-~~~-~~~l~~lI~~~GG~v~~~~p~~~~~~~~~~~~~~~~~ivis~~~d~~~~~~~-----~~~ 192 (219)
T 3sqd_A 120 SPLFKAKYFYITPGI-CPS-LSTMKAIVECAGGKVLSKQPSFRKLMEHKQNSSLSEIILISCENDLHLCREY-----FAR 192 (219)
T ss_dssp SCTTTTEEEEECTTC-SSC-HHHHHHHHHHTTCEEESSCCCHHHHHHHHHCTTSCEEEEEECGGGGGGGHHH-----HHT
T ss_pred ccccCCcEEEEeCCC-CCC-HHHHHHHHHHCCCEEECCCCchHHhhhhhcccCCCCEEEEecccHHHHHHHH-----HHC
Confidence 469999999998743 223 467999999999999987632 122334333322 11111 123
Q ss_pred CccccccchHHHHHhcCCCCCcccccc
Q 012388 82 KGSVIRYQWLEDSLRLGEKVSEDLYRI 108 (464)
Q Consensus 82 ~~~iV~~~Wl~ec~k~g~lvdee~y~l 108 (464)
+..+++.+|+.+|+-..++ |-+.|.+
T Consensus 193 ~~~v~s~E~il~~Il~q~l-d~~~~~~ 218 (219)
T 3sqd_A 193 GIDVHNAEFVLTGVLTQTL-DYESYKF 218 (219)
T ss_dssp TCCCEETHHHHHHHHHTCC-CTTTSBC
T ss_pred CCcEEeHHHHHHHHHheee-cchhccc
Confidence 6789999999999997554 7777765
No 63
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=96.32 E-value=0.0029 Score=49.52 Aligned_cols=47 Identities=19% Similarity=0.364 Sum_probs=37.7
Q ss_pred HHHHhhhccCcCHHHHHHHHHc-CCCCHHHHhhccCcchHHHhhHhhHHhhccC
Q 012388 293 TISLFGEVWGIGPATAQKLYEK-GHRTLDDLKNEDSLTHSQRLGLKYFDDIKTR 345 (464)
Q Consensus 293 ~l~lf~~I~GvGpktA~~ly~~-GirtledL~~~~~L~~~q~~Glk~~ed~~~~ 345 (464)
....|.+|+|||+++|+++++. ++.|++||.+ ..++|.+.++.+...
T Consensus 25 ~~~~L~~ipGIG~~~A~~Il~~r~~~s~~eL~~------v~Gig~k~~~~i~~~ 72 (75)
T 2duy_A 25 SLEELMALPGIGPVLARRIVEGRPYARVEDLLK------VKGIGPATLERLRPY 72 (75)
T ss_dssp CHHHHTTSTTCCHHHHHHHHHTCCCSSGGGGGG------STTCCHHHHHHHGGG
T ss_pred CHHHHHhCCCCCHHHHHHHHHHcccCCHHHHHh------CCCCCHHHHHHHHHh
Confidence 4556779999999999999997 8999999874 457777777776543
No 64
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=96.28 E-value=0.0026 Score=50.13 Aligned_cols=51 Identities=18% Similarity=0.394 Sum_probs=38.3
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHH
Q 012388 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 313 (464)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~ 313 (464)
..|..|||||+..+.+|.+.. |.+ +.+.+. ..+.|.+|+|||+++|..+++
T Consensus 24 ~~L~~I~gIG~~~A~~Ll~~f--gsl---~~l~~a----~~eeL~~i~GIG~~~a~~I~~ 74 (78)
T 1kft_A 24 SSLETIEGVGPKRRQMLLKYM--GGL---QGLRNA----SVEEIAKVPGISQGLAEKIFW 74 (78)
T ss_dssp CGGGGCTTCSSSHHHHHHHHH--SCH---HHHHHC----CHHHHTTSSSTTSHHHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHc--CCH---HHHHHC----CHHHHHHCCCCCHHHHHHHHH
Confidence 458899999999999887764 444 444332 234567999999999999975
No 65
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=96.27 E-value=0.0042 Score=67.87 Aligned_cols=84 Identities=17% Similarity=0.258 Sum_probs=62.5
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHcCCCCHHHHhhcc--CcchH
Q 012388 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHS 331 (464)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~GirtledL~~~~--~L~~~ 331 (464)
+++..++|+|++.+++|.+=++. .+...-...+--| +|+|||+++|+.|.+. +.|++.|.++. .|...
T Consensus 475 e~L~~l~g~G~Ksa~nLl~aIe~--------sk~~~l~R~L~al-GI~~VG~~~Ak~La~~-Fgsl~~l~~As~eeL~~I 544 (667)
T 1dgs_A 475 EDLLGLERMGEKSAQNLLRQIEE--------SKHRGLERLLYAL-GLPGVGEVLARNLARR-FGTMDRLLEASLEELIEV 544 (667)
T ss_dssp HHHHTTSSCCSTTHHHHHHHHHH--------GGGCCHHHHHHHT-TCSSCCHHHHHHHHHT-TSBHHHHTTCCHHHHHTS
T ss_pred HHHhcccccchhhHHHHHHHHHH--------HhcCcHHHhhHhh-ccCCccHHHHHHHHHH-cCCHHHHHhCCHHHHHhc
Confidence 67889999999999998765543 2221112334444 9999999999999875 77899997653 47778
Q ss_pred HHhhHhhHHhhccCCC
Q 012388 332 QRLGLKYFDDIKTRIP 347 (464)
Q Consensus 332 q~~Glk~~ed~~~~i~ 347 (464)
.++|.+..+.|...+.
T Consensus 545 ~GIG~~~A~sI~~ff~ 560 (667)
T 1dgs_A 545 EEVGELTARAILETLK 560 (667)
T ss_dssp TTCCHHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHHHHh
Confidence 8899888888876654
No 66
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=96.25 E-value=0.0016 Score=54.00 Aligned_cols=49 Identities=16% Similarity=0.236 Sum_probs=40.3
Q ss_pred HHHHhhhccCcCHHHHHHHHHc-CCCCHHHHhhccCcchHHHhhHhhHHhhccCCC
Q 012388 293 TISLFGEVWGIGPATAQKLYEK-GHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIP 347 (464)
Q Consensus 293 ~l~lf~~I~GvGpktA~~ly~~-GirtledL~~~~~L~~~q~~Glk~~ed~~~~i~ 347 (464)
..+.|+.|||||+++|+++.+. +|+|++||.+ ..++|.+.++.+...+.
T Consensus 24 s~~eL~~lpGIG~~~A~~IV~~GpF~s~edL~~------V~Gig~~~~e~l~~~l~ 73 (97)
T 3arc_U 24 NIAAFIQYRGLYPTLAKLIVKNAPYESVEDVLN------IPGLTERQKQILRENLE 73 (97)
T ss_dssp CGGGGGGSTTCTTHHHHHHHHHCCCSSGGGGGG------CTTCCHHHHHHHHHTGG
T ss_pred CHHHHhHCCCCCHHHHHHHHHcCCCCCHHHHHh------ccCCCHHHHHHHHHHhc
Confidence 4567889999999999999997 8999999985 46788888887765544
No 67
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=96.20 E-value=0.0029 Score=59.73 Aligned_cols=53 Identities=15% Similarity=0.271 Sum_probs=37.5
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHH-HHhhchhHHHHHhhhccCcCHHHHHHHHH
Q 012388 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEH-FEKDEKVRTISLFGEVWGIGPATAQKLYE 313 (464)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~-l~~~~~~~~l~lf~~I~GvGpktA~~ly~ 313 (464)
..|.+++|||+++|..|-+.+.. ..+.. +.+ .-.+.|++|||||+|||+++..
T Consensus 88 ~~L~sv~GIGpk~A~~Ils~~~~---~~l~~aI~~----~d~~~L~~vpGIG~KtA~rIi~ 141 (212)
T 2ztd_A 88 LTLLSVSGVGPRLAMAALAVHDA---PALRQVLAD----GNVAALTRVPGIGKRGAERMVL 141 (212)
T ss_dssp HHHHTSTTCCHHHHHHHHHHSCH---HHHHHHHHT----TCHHHHHTSTTCCHHHHHHHHH
T ss_pred HHhcCcCCcCHHHHHHHHHhCCH---HHHHHHHHh----CCHHHHhhCCCCCHHHHHHHHH
Confidence 34777999999999988764432 33331 222 2245577999999999999975
No 68
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=96.17 E-value=0.0037 Score=58.11 Aligned_cols=44 Identities=30% Similarity=0.370 Sum_probs=37.0
Q ss_pred cchhhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCH
Q 012388 251 ESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGP 305 (464)
Q Consensus 251 ~s~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGp 305 (464)
.+.++|..|||||++.|+.|-++-+.|.+..+|+|.+ +|.|||.
T Consensus 129 A~~~eL~~LpGIG~k~A~~IIeyRe~G~F~s~eDL~~-----------RV~GIg~ 172 (205)
T 2i5h_A 129 TRMHQLELLPGVGKKMMWAIIEERKKRPFESFEDIAQ-----------RVKGIQR 172 (205)
T ss_dssp SSSBGGGGSTTCCHHHHHHHHHHHHHSCCCSHHHHHH-----------HSTTCCC
T ss_pred CCHHHHhcCCCcCHHHHHHHHHHHhcCCCCCHHHHHH-----------hcCCCCc
Confidence 3568899999999999999999998899988888752 5888544
No 69
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=96.13 E-value=0.0062 Score=49.16 Aligned_cols=51 Identities=18% Similarity=0.354 Sum_probs=37.6
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHH
Q 012388 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 313 (464)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~ 313 (464)
..|.+|||||+..+.+|.+.. |++ +.+.+.. .+.|.+|+|||+++|..++.
T Consensus 19 ~~L~~IpgIG~~~A~~Ll~~f--gsl---~~l~~a~----~~eL~~i~GIG~~~a~~I~~ 69 (89)
T 1z00_A 19 ECLTTVKSVNKTDSQTLLTTF--GSL---EQLIAAS----REDLALCPGLGPQKARRLFD 69 (89)
T ss_dssp HHHTTSSSCCHHHHHHHHHHT--CBH---HHHHHCC----HHHHHTSTTCCHHHHHHHHH
T ss_pred HHHHcCCCCCHHHHHHHHHHC--CCH---HHHHhCC----HHHHHhCCCCCHHHHHHHHH
Confidence 457899999999988887643 444 4443222 34567999999999999986
No 70
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=96.10 E-value=0.0027 Score=59.54 Aligned_cols=52 Identities=19% Similarity=0.291 Sum_probs=37.2
Q ss_pred hhcCCCCCCHHHHHHHHHHHHhCCchhh-HHHHhhchhHHHHHhhhccCcCHHHHHHHHH
Q 012388 255 QVKGLPGIGKSMQDHIQEIVTTGKLSKL-EHFEKDEKVRTISLFGEVWGIGPATAQKLYE 313 (464)
Q Consensus 255 ~l~~lpgIG~~ia~kI~Eil~tG~~~~l-e~l~~~~~~~~l~lf~~I~GvGpktA~~ly~ 313 (464)
.|.++||||+++|..|-..+.. ..+ +.+. ..-.+.|++|||||+|||++++.
T Consensus 74 ~L~~V~GIGpk~A~~iL~~f~~---~~l~~aI~----~~d~~~L~~vpGIG~K~A~rI~~ 126 (203)
T 1cuk_A 74 ELIKTNGVGPKLALAILSGMSA---QQFVNAVE----REEVGALVKLPGIGKKTAERLIV 126 (203)
T ss_dssp HHHHSSSCCHHHHHHHHHHSCH---HHHHHHHH----TTCHHHHHTSTTCCHHHHHHHHH
T ss_pred HHhcCCCcCHHHHHHHHhhCCh---HHHHHHHH----hCCHHHHhhCCCCCHHHHHHHHH
Confidence 4667999999999987654332 222 2333 23456678999999999999975
No 71
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=96.02 E-value=0.0071 Score=49.11 Aligned_cols=51 Identities=18% Similarity=0.354 Sum_probs=37.7
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHH
Q 012388 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 313 (464)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~ 313 (464)
..|.+|||||+..+.+|.+.. |.+ +.+.... .+.|.+|+|||+++|..+++
T Consensus 32 ~~L~~IpgIG~~~A~~Ll~~f--gs~---~~l~~as----~~eL~~i~GIG~~~a~~I~~ 82 (91)
T 2a1j_B 32 ECLTTVKSVNKTDSQTLLTTF--GSL---EQLIAAS----REDLALCPGLGPQKARRLFD 82 (91)
T ss_dssp HHHTTSTTCCHHHHHHHHHHH--SSH---HHHHSCC----HHHHHTSSSCCSHHHHHHHH
T ss_pred HHHHcCCCCCHHHHHHHHHHC--CCH---HHHHhCC----HHHHHhCCCCCHHHHHHHHH
Confidence 457799999999998887653 544 4443322 34567999999999999976
No 72
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=95.60 E-value=0.0076 Score=48.92 Aligned_cols=54 Identities=19% Similarity=0.207 Sum_probs=38.3
Q ss_pred hchhHHHHHhhhccCcCHHHHHHHHHcCCCCHHHHhhcc--CcchHHHhhHhhHHhh
Q 012388 288 DEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHSQRLGLKYFDDI 342 (464)
Q Consensus 288 ~~~~~~l~lf~~I~GvGpktA~~ly~~GirtledL~~~~--~L~~~q~~Glk~~ed~ 342 (464)
+.....+..|+.|+|||+++|++|++. +.|+++|.++. .|....++|.+..+.|
T Consensus 25 ~~~~~~~~~L~~IpgIG~~~A~~Ll~~-fgs~~~l~~as~~eL~~i~GIG~~~a~~I 80 (91)
T 2a1j_B 25 DFVSRVTECLTTVKSVNKTDSQTLLTT-FGSLEQLIAASREDLALCPGLGPQKARRL 80 (91)
T ss_dssp HHHHHHHHHHTTSTTCCHHHHHHHHHH-HSSHHHHHSCCHHHHHTSSSCCSHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCHHHHHHHHHH-CCCHHHHHhCCHHHHHhCCCCCHHHHHHH
Confidence 334446677789999999999999986 33788887643 3555666676655444
No 73
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=95.46 E-value=0.012 Score=47.48 Aligned_cols=52 Identities=17% Similarity=0.210 Sum_probs=37.1
Q ss_pred hhHHHHHhhhccCcCHHHHHHHHHcCCCCHHHHhhcc--CcchHHHhhHhhHHhh
Q 012388 290 KVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHSQRLGLKYFDDI 342 (464)
Q Consensus 290 ~~~~l~lf~~I~GvGpktA~~ly~~GirtledL~~~~--~L~~~q~~Glk~~ed~ 342 (464)
.......|..|+|||+++|++|++. +.|+++|.++. .|....++|.+..+.|
T Consensus 14 ~~~~~~~L~~IpgIG~~~A~~Ll~~-fgsl~~l~~a~~~eL~~i~GIG~~~a~~I 67 (89)
T 1z00_A 14 VSRVTECLTTVKSVNKTDSQTLLTT-FGSLEQLIAASREDLALCPGLGPQKARRL 67 (89)
T ss_dssp HHHHHHHHTTSSSCCHHHHHHHHHH-TCBHHHHHHCCHHHHHTSTTCCHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHH-CCCHHHHHhCCHHHHHhCCCCCHHHHHHH
Confidence 3446667789999999999999986 44888887653 3555666666554443
No 74
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=95.36 E-value=0.0097 Score=48.89 Aligned_cols=31 Identities=29% Similarity=0.335 Sum_probs=28.1
Q ss_pred HhhhccCcCHHHHHHHHHcCCCCHHHHhhcc
Q 012388 296 LFGEVWGIGPATAQKLYEKGHRTLDDLKNED 326 (464)
Q Consensus 296 lf~~I~GvGpktA~~ly~~GirtledL~~~~ 326 (464)
-|+.+|+|||++++.|++.||.|++||+..+
T Consensus 5 ~L~~LPNiG~~~e~~L~~vGI~s~e~L~~~G 35 (93)
T 3bqs_A 5 NLSELPNIGKVLEQDLIKAGIKTPVELKDVG 35 (93)
T ss_dssp CGGGSTTCCHHHHHHHHHTTCCSHHHHHHHH
T ss_pred HhhcCCCCCHHHHHHHHHcCCCCHHHHHhCC
Confidence 3679999999999999999999999999654
No 75
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=94.99 E-value=0.011 Score=45.49 Aligned_cols=50 Identities=12% Similarity=0.218 Sum_probs=37.0
Q ss_pred HHHHhhhccCcCHHHHHHHHHcCCCCHHHHhhcc--CcchHHHhhHhhHHhhc
Q 012388 293 TISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHSQRLGLKYFDDIK 343 (464)
Q Consensus 293 ~l~lf~~I~GvGpktA~~ly~~GirtledL~~~~--~L~~~q~~Glk~~ed~~ 343 (464)
....|+.|+|||+++|++|++. +.|+++|..+. .|....++|.+..+.|.
T Consensus 12 ~~~~L~~i~giG~~~a~~Ll~~-fgs~~~l~~a~~~~L~~i~Gig~~~a~~i~ 63 (75)
T 1x2i_A 12 QRLIVEGLPHVSATLARRLLKH-FGSVERVFTASVAELMKVEGIGEKIAKEIR 63 (75)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHH-HCSHHHHHHCCHHHHTTSTTCCHHHHHHHH
T ss_pred HHHHHcCCCCCCHHHHHHHHHH-cCCHHHHHhCCHHHHhcCCCCCHHHHHHHH
Confidence 4555779999999999999985 66788887653 46666777766655543
No 76
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=94.82 E-value=0.0061 Score=48.00 Aligned_cols=50 Identities=20% Similarity=0.293 Sum_probs=36.5
Q ss_pred HHHHhhhccCcCHHHHHHHHHcCCCCHHHHhhcc--CcchHHHhhHhhHHhhc
Q 012388 293 TISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHSQRLGLKYFDDIK 343 (464)
Q Consensus 293 ~l~lf~~I~GvGpktA~~ly~~GirtledL~~~~--~L~~~q~~Glk~~ed~~ 343 (464)
....|..|+|||+++|++|++. +.|+++|.++. .|....++|.+..+.|.
T Consensus 22 ~~~~L~~I~gIG~~~A~~Ll~~-fgsl~~l~~a~~eeL~~i~GIG~~~a~~I~ 73 (78)
T 1kft_A 22 NTSSLETIEGVGPKRRQMLLKY-MGGLQGLRNASVEEIAKVPGISQGLAEKIF 73 (78)
T ss_dssp -CCGGGGCTTCSSSHHHHHHHH-HSCHHHHHHCCHHHHTTSSSTTSHHHHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHH-cCCHHHHHHCCHHHHHHCCCCCHHHHHHHH
Confidence 3344679999999999999997 44899988653 46666677776665554
No 77
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=94.80 E-value=0.03 Score=48.80 Aligned_cols=41 Identities=20% Similarity=0.233 Sum_probs=32.7
Q ss_pred HHHHhhhccCcCHHHHHHHHHc-CCCCHHHHhhccCcchHHHhhHhhH
Q 012388 293 TISLFGEVWGIGPATAQKLYEK-GHRTLDDLKNEDSLTHSQRLGLKYF 339 (464)
Q Consensus 293 ~l~lf~~I~GvGpktA~~ly~~-GirtledL~~~~~L~~~q~~Glk~~ 339 (464)
..+.|+++|||||++|+++.+. .++|+|||.+- .+||-+.+
T Consensus 61 ~~~eL~~LpGiGp~~A~~II~~GpF~svedL~~V------~GIg~k~~ 102 (134)
T 1s5l_U 61 NIAAFIQYRGLYPTLAKLIVKNAPYESVEDVLNI------PGLTERQK 102 (134)
T ss_dssp CGGGGGGSTTCTHHHHHHHHHTCCCSSGGGGGGC------TTCCHHHH
T ss_pred CHHHHHHCCCCCHHHHHHHHHcCCCCCHHHHHhC------CCCCHHHH
Confidence 4556779999999999999987 89999999863 45665433
No 78
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=94.77 E-value=0.028 Score=52.78 Aligned_cols=50 Identities=30% Similarity=0.511 Sum_probs=37.3
Q ss_pred hhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHH
Q 012388 255 QVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 313 (464)
Q Consensus 255 ~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~ 313 (464)
.|.+|||||+..|..|.+.. |+ ++.+.+.. .+.|.+|+|||+++|+++++
T Consensus 163 ~L~~i~gVg~~~a~~Ll~~f--gs---~~~l~~a~----~e~L~~v~GiG~~~a~~i~~ 212 (219)
T 2bgw_A 163 ILQSFPGIGRRTAERILERF--GS---LERFFTAS----KAEISKVEGIGEKRAEEIKK 212 (219)
T ss_dssp HHHTSTTCCHHHHHHHHHHH--SS---HHHHTTCC----HHHHHHSTTCCHHHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHc--CC---HHHHHhCC----HHHHhhCCCCCHHHHHHHHH
Confidence 47799999999999887754 44 44443322 23467999999999999986
No 79
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=94.41 E-value=0.06 Score=51.32 Aligned_cols=62 Identities=11% Similarity=0.097 Sum_probs=44.4
Q ss_pred hhhcCCCCCCHHHHHHHHH---HHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHcCC
Q 012388 254 DQVKGLPGIGKSMQDHIQE---IVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGH 316 (464)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~E---il~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~Gi 316 (464)
++|..+ |+|..=++-|.+ .+..|.++.++.+..-....+++.|++|+||||+||..+--.++
T Consensus 107 e~Lr~~-Gl~~~Ka~~l~~~A~~~~~g~~p~l~~l~~~~~~~~~~~L~~l~GIG~~TA~~ill~al 171 (232)
T 4b21_A 107 ETLHEC-GFSKLKSQEIHIVAEAALNKQIPSKSEIEKMSEEELMESLSKIKGVKRWTIEMYSIFTL 171 (232)
T ss_dssp HHHHTT-TCCHHHHHHHHHHHHHHHTTCSCCHHHHHHSCHHHHHHHHTTSTTCCHHHHHHHHHHTS
T ss_pred HHHHHc-CCcHHHHHHHHHHHHHHHhCCCCCHHHHHcCCHHHHHHHHHhCCCcCHHHHHHHHHHhC
Confidence 445443 888764555544 34568887777776666667899999999999999999765433
No 80
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=94.30 E-value=0.038 Score=51.33 Aligned_cols=52 Identities=12% Similarity=0.191 Sum_probs=38.4
Q ss_pred HHHHhhhccCcCHHHHHHHHHc----CCCCHHHHhhc--cCcchHHHhhHhhHHhhcc
Q 012388 293 TISLFGEVWGIGPATAQKLYEK----GHRTLDDLKNE--DSLTHSQRLGLKYFDDIKT 344 (464)
Q Consensus 293 ~l~lf~~I~GvGpktA~~ly~~----GirtledL~~~--~~L~~~q~~Glk~~ed~~~ 344 (464)
.+..|+.+||||+++|+++.+. .++|++||.+. +--....-||-+.++.+..
T Consensus 130 ~~~eL~~LpGIG~k~A~~IIeyRe~G~F~s~eDL~~RV~GIg~~~~~Ig~r~le~lk~ 187 (205)
T 2i5h_A 130 RMHQLELLPGVGKKMMWAIIEERKKRPFESFEDIAQRVKGIQRPEKLIVSRIIYEIKN 187 (205)
T ss_dssp SSBGGGGSTTCCHHHHHHHHHHHHHSCCCSHHHHHHHSTTCCCHHHHHHHHHHHHHHC
T ss_pred CHHHHhcCCCcCHHHHHHHHHHHhcCCCCCHHHHHHhcCCCCcchhHHHHHHHHHhhC
Confidence 3455678999999999999862 79999999752 2123345588888888753
No 81
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=94.26 E-value=0.056 Score=58.24 Aligned_cols=87 Identities=17% Similarity=0.263 Sum_probs=65.9
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHcCCCCHHHHhhcc--CcchH
Q 012388 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHS 331 (464)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~GirtledL~~~~--~L~~~ 331 (464)
++|.+|+|+|++.+++|.+=++.-+-. +-...|--| +|++||.++|+.|-+ .+.|++.|.++. .|..+
T Consensus 480 ~~L~~l~g~geKsa~nL~~aIe~sk~~--------~l~r~l~aL-GI~~vG~~~a~~La~-~f~sl~~l~~a~~e~l~~i 549 (586)
T 4glx_A 480 GKLTGLERMGPKSAQNVVNALEKAKET--------TFARFLYAL-GIREVGEATAAGLAA-YFGTLEALEAASIEELQKV 549 (586)
T ss_dssp HHHHTSTTCCHHHHHHHHHHHHHHTBC--------CHHHHHHHT-TCTTCCHHHHHHHHH-HHCSHHHHHHCCHHHHTTS
T ss_pred HHHhcccCccHHHHHHHHHHHHHHcCC--------CHHHHHHHc-CCCchhHHHHHHHHH-HcCCHHHHHccCHHHHhcC
Confidence 789999999999999987665543333 333455666 999999999999865 466999998753 58888
Q ss_pred HHhhHhhHHhhccCCCHHH
Q 012388 332 QRLGLKYFDDIKTRIPRHE 350 (464)
Q Consensus 332 q~~Glk~~ed~~~~i~r~E 350 (464)
.++|-+..+.|..-+.-++
T Consensus 550 ~giG~~~A~si~~ff~~~~ 568 (586)
T 4glx_A 550 PDVGIVVASHVHNFFAEES 568 (586)
T ss_dssp TTCCHHHHHHHHHHHHSHH
T ss_pred CCccHHHHHHHHHHHcCHH
Confidence 8999888888876554333
No 82
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=94.21 E-value=0.044 Score=41.47 Aligned_cols=30 Identities=10% Similarity=0.226 Sum_probs=25.3
Q ss_pred HHhhhccCcCHHHHHHHHHcCCCCHHHHhhc
Q 012388 295 SLFGEVWGIGPATAQKLYEKGHRTLDDLKNE 325 (464)
Q Consensus 295 ~lf~~I~GvGpktA~~ly~~GirtledL~~~ 325 (464)
..|.+||||||++++.|.+ .+.|+++|.++
T Consensus 4 s~L~~IpGIG~kr~~~LL~-~Fgs~~~i~~A 33 (63)
T 2a1j_A 4 DFLLKMPGVNAKNCRSLMH-HVKNIAELAAL 33 (63)
T ss_dssp HHHHTSTTCCHHHHHHHHH-HCSSHHHHHTC
T ss_pred hHHHcCCCCCHHHHHHHHH-HcCCHHHHHHC
Confidence 4567999999999999997 56699998865
No 83
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=94.18 E-value=0.033 Score=45.67 Aligned_cols=31 Identities=29% Similarity=0.335 Sum_probs=28.4
Q ss_pred HhhhccCcCHHHHHHHHHcCCCCHHHHhhcc
Q 012388 296 LFGEVWGIGPATAQKLYEKGHRTLDDLKNED 326 (464)
Q Consensus 296 lf~~I~GvGpktA~~ly~~GirtledL~~~~ 326 (464)
-|+.+|+|||++++.|.+.||.|++||+..+
T Consensus 5 ~L~dLPNig~~~e~~L~~~GI~t~~~Lr~~G 35 (93)
T 3mab_A 5 NLSELPNIGKVLEQDLIKAGIKTPVELKDVG 35 (93)
T ss_dssp CGGGSTTCCHHHHHHHHHTTCCSHHHHHHHC
T ss_pred HHhhCCCCCHHHHHHHHHcCCCCHHHHHhCC
Confidence 3679999999999999999999999999765
No 84
>3qbz_A DDK kinase regulatory subunit DBF4; FHA domain,RAD53, replication checkpoint, cell cycle; 2.69A {Saccharomyces cerevisiae}
Probab=94.13 E-value=0.035 Score=49.62 Aligned_cols=48 Identities=17% Similarity=0.318 Sum_probs=36.5
Q ss_pred CCCC-CeEEEEecCCCC------ch----HHHHHHHHHHhcCCEEEeecCCCccEEEEc
Q 012388 17 GIFA-GMRVFLVEKGVQ------NR----RLQIWRQKLVQMGATVEEKLSKKVTHVLAM 64 (464)
Q Consensus 17 ~~F~-g~~vy~~~~~~g------~~----R~~~l~~~i~~~Gg~V~~~ls~~VTHVV~~ 64 (464)
.+|+ +++|||-..... .+ +...|++.+...||+|+.-++.+|||||+.
T Consensus 57 kifk~~~vfYFDt~~~~~~~~~~k~kl~K~~~llkr~f~~LGA~I~~FFd~~VTiVIT~ 115 (160)
T 3qbz_A 57 KIMKRDSRIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLTLGAQITQFFDTTVTIVITR 115 (160)
T ss_dssp HHHHHHCEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHTTTCEEESSCCTTCCEEEES
T ss_pred HhCccCcEEEecCCChhhhhHHHHHHHHHHHHHHHHHHHHcCCEeeeeccCCeEEEEec
Confidence 4687 899999654322 11 224566788899999999999999999984
No 85
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=94.11 E-value=0.032 Score=43.32 Aligned_cols=53 Identities=23% Similarity=0.283 Sum_probs=42.0
Q ss_pred HHHHHhhhccCcCHHHHHHHHHcCCCCHHHHhhcc--CcchHHHhhHhhHHhhcc
Q 012388 292 RTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHSQRLGLKYFDDIKT 344 (464)
Q Consensus 292 ~~l~lf~~I~GvGpktA~~ly~~GirtledL~~~~--~L~~~q~~Glk~~ed~~~ 344 (464)
...++|+++.||+...|++|.+.||.|+++|--.. .|..+.+|.-...++|+.
T Consensus 3 ~~~~~f~~~lgI~e~~a~~L~~~Gf~tve~vA~~~~~eL~~I~G~dE~~a~~l~~ 57 (70)
T 1u9l_A 3 AAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRE 57 (70)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHTTCCCHHHHHHSCHHHHTTSTTCCHHHHHHHHH
T ss_pred hHHHHHHHhCCCCHHHHHHHHHcCcCcHHHHHcCCHHHHhhccCCCHHHHHHHHH
Confidence 35688999999999999999999999999998542 466666666666555553
No 86
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=94.07 E-value=0.076 Score=50.43 Aligned_cols=55 Identities=20% Similarity=0.240 Sum_probs=41.4
Q ss_pred CCCHHHHHHHHH---HHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHcC
Q 012388 261 GIGKSMQDHIQE---IVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKG 315 (464)
Q Consensus 261 gIG~~ia~kI~E---il~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~G 315 (464)
|++..=++.|.+ .+..|.+..++.+..-....+++.|++|+||||+||..+--.+
T Consensus 102 G~~~rKa~~i~~~A~~~~~g~~p~~~~l~~~~~~e~~~~L~~l~GIG~~TA~~ill~~ 159 (228)
T 3s6i_A 102 GFSARKIDSLKSIAEATISGLIPTKEEAERLSNEELIERLTQIKGIGRWTVEMLLIFS 159 (228)
T ss_dssp TCCHHHHHHHHHHHHHHHHTSSCCHHHHTTSCHHHHHHHHTTSTTCCHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHcCCCCChHHHhcCCHHHHHHHHHhCCCcCHHHHHHHHHHh
Confidence 777764444443 3447888777777776777789999999999999999976543
No 87
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=94.05 E-value=0.033 Score=60.01 Aligned_cols=54 Identities=15% Similarity=0.272 Sum_probs=41.6
Q ss_pred chhhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHH
Q 012388 252 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY 312 (464)
Q Consensus 252 s~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly 312 (464)
...+|.+|||||++.|.+|-+ . .+..+++|++....+ .+++++|||+|||+++.
T Consensus 95 ~~~~L~~v~GVGpk~A~~i~~---~-G~~s~edL~~a~~~~---~L~~~~GiG~Ktaq~I~ 148 (578)
T 2w9m_A 95 GLLDLLGVRGLGPKKIRSLWL---A-GIDSLERLREAAESG---ELAGLKGFGAKSAATIL 148 (578)
T ss_dssp HHHHHTTSTTCCHHHHHHHHH---T-TCCSHHHHHHHHHHT---TTTTSTTCCHHHHHHHH
T ss_pred HHHHHhCCCCcCHHHHHHHHH---c-CCCCHHHHHHHHhhC---ccccCCCCCHHHHHHHH
Confidence 467899999999999998864 4 456677776532222 57799999999999993
No 88
>3oq0_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA domain, regula subunit of DDK, CDC7, phosphorylation, nuclear; 2.70A {Saccharomyces cerevisiae}
Probab=93.90 E-value=0.081 Score=46.90 Aligned_cols=46 Identities=15% Similarity=0.327 Sum_probs=38.2
Q ss_pred CCeEEEEecCCCC----------chHHHHHHHHHHhcCCEEEeecCCCccEEEEcC
Q 012388 20 AGMRVFLVEKGVQ----------NRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMD 65 (464)
Q Consensus 20 ~g~~vy~~~~~~g----------~~R~~~l~~~i~~~Gg~V~~~ls~~VTHVV~~~ 65 (464)
++-+|||-..+.. ..+.+.|++.+...||.|++-++.+|||||+..
T Consensus 23 r~s~iYFdt~~~~~~~~~~~~~l~k~~~llkk~f~~LGa~I~~FFd~~VTiIITrR 78 (151)
T 3oq0_A 23 RDSRIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLTLGAQITQFFDTTVTIVITRR 78 (151)
T ss_dssp CCCEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHHHTCEEESSCCTTCCEEEESS
T ss_pred cCCEEEEeCCCcchhhHHHHHHHHHHHHHHHHHHHHcCCEEeeecCCceEEEEeCC
Confidence 8999999766432 235678889999999999999999999999853
No 89
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A*
Probab=93.90 E-value=0.1 Score=49.19 Aligned_cols=85 Identities=11% Similarity=0.118 Sum_probs=53.2
Q ss_pred CCCCCCeEEEEecCCCCchHHHHHHHHHHhcCCEEEeec--C--------CCccEEEEcCChHHH-HHHHHHhhhccCcc
Q 012388 16 NGIFAGMRVFLVEKGVQNRRLQIWRQKLVQMGATVEEKL--S--------KKVTHVLAMDLEALL-QQVSKQHLARFKGS 84 (464)
Q Consensus 16 ~~~F~g~~vy~~~~~~g~~R~~~l~~~i~~~Gg~V~~~l--s--------~~VTHVV~~~~~~~~-~~l~~~~~~~~~~~ 84 (464)
..+|+|+.+|+.+.-......+.|+.++..+||+|...- . ++-.+||+.+.+..+ ..++........++
T Consensus 111 ~~LF~G~~f~it~~~~~~p~~~~l~~iI~~~GG~v~~~p~~~~~~~~~~~~~~~~vis~~~d~~~~~~f~~~~~~~~~~~ 190 (220)
T 3l41_A 111 PSLLEDYVVYLTSKTVAPENVPAVISIVKSNGGVCSTLNVYNKRLARHLEDGNVVLITCNEDSHIWTNFLDNASQNKTIF 190 (220)
T ss_dssp SCTTTTSEEEEETTSSCGGGHHHHHHHHHHTTCEEEEECSCCHHHHHHHHHCCEEEEECGGGHHHHTTTHHHHTTCTTEE
T ss_pred chhhhheeEEEeccccCCCCCceEEEEEecCCcEechhhHHHHHHHHhcccCCEEEEEeCCcchHHHHhhccccccceEE
Confidence 579999999998653112225678999999999999811 0 122456655333321 11111111122577
Q ss_pred ccccchHHHHHhcCCC
Q 012388 85 VIRYQWLEDSLRLGEK 100 (464)
Q Consensus 85 iV~~~Wl~ec~k~g~l 100 (464)
||+.+|+.+++-..++
T Consensus 191 i~~~e~ll~~il~q~l 206 (220)
T 3l41_A 191 LQNYDWLIKTVLRQEI 206 (220)
T ss_dssp EEEHHHHHHHHHHTCC
T ss_pred EechhHHHHHHHHHHc
Confidence 9999999999987544
No 90
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=93.55 E-value=0.19 Score=50.02 Aligned_cols=65 Identities=18% Similarity=0.223 Sum_probs=50.3
Q ss_pred HHHHHHHHhhhcCCCEEEEEcccccccCC-cCCCccEEEeCCCcch-hhhHHHHHHHHHHhcccccc
Q 012388 354 MERLLQKAGEEVLPEVIILCGGSYRRGKA-SCGDLDVVIMHPDRKS-HKGFLSKYVKKLKEMKFLRE 418 (464)
Q Consensus 354 i~~iv~~~~~~~~p~~~v~~~GsyRRgke-~~gDvDiLit~~d~~~-~~~~l~~lv~~L~~~g~l~~ 418 (464)
+...+++++.+..|++.|.+-||+++|-- ...|||++|..+.... ...+|.++-+.|++.|..++
T Consensus 45 ~~~~l~~~~~~~~p~~~v~~fGS~~~g~~~~~SDiDl~v~~~~~~~~~~~~l~~l~~~L~~~~~~~~ 111 (323)
T 3nyb_A 45 TISTIREAVKQLWPDADLHVFGSYSTDLYLPGSDIDCVVTSELGGKESRNNLYSLASHLKKKNLATE 111 (323)
T ss_dssp HHHHHHHHHHTTCTTCCEEEESTTTTTCCCTTSCEEEEECSSCCGGGHHHHHHHHHHHHHHTTSCSS
T ss_pred HHHHHHHHHHHHCCCCEEEEeCccccCCCCCCCCceEEEecCCCChhHHHHHHHHHHHHhhCCCceE
Confidence 34445556666789999999999999976 3689999998877542 34688899999999887654
No 91
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=93.53 E-value=0.078 Score=42.59 Aligned_cols=35 Identities=9% Similarity=0.158 Sum_probs=29.3
Q ss_pred hhHHHHHhhhccCcCHHHHHHHHHcCCCCHHHHhhc
Q 012388 290 KVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE 325 (464)
Q Consensus 290 ~~~~l~lf~~I~GvGpktA~~ly~~GirtledL~~~ 325 (464)
......+|..||||||++++.|.+ .+.|+++|.++
T Consensus 13 N~~~~s~L~~IpGIG~kr~~~LL~-~FgSl~~i~~A 47 (84)
T 1z00_B 13 NPGPQDFLLKMPGVNAKNCRSLMH-HVKNIAELAAL 47 (84)
T ss_dssp CHHHHHHHHTCSSCCHHHHHHHHH-HSSCHHHHHHS
T ss_pred cccHHHHHHhCCCCCHHHHHHHHH-HcCCHHHHHHC
Confidence 445677788999999999999996 67889998865
No 92
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=93.43 E-value=0.014 Score=56.11 Aligned_cols=54 Identities=24% Similarity=0.445 Sum_probs=0.0
Q ss_pred hhhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHc
Q 012388 253 ADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK 314 (464)
Q Consensus 253 ~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~ 314 (464)
..+|..|||||++.+.+|.+. | +..++.+.+ ...+.|.+|+|||+++|+++++.
T Consensus 14 ~~~L~~IpGIGpk~a~~Ll~~---g-f~sve~L~~----a~~~eL~~v~GIG~ktAe~I~~~ 67 (241)
T 1vq8_Y 14 YTELTDISGVGPSKAESLREA---G-FESVEDVRG----ADQSALADVSGIGNALAARIKAD 67 (241)
T ss_dssp --------------------------------------------------------------
T ss_pred hhHHhcCCCCCHHHHHHHHHc---C-CCCHHHHHh----CCHHHHHhccCCCHHHHHHHHHH
Confidence 357899999999999988765 2 233555532 23445679999999999999763
No 93
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=93.41 E-value=0.025 Score=53.33 Aligned_cols=52 Identities=19% Similarity=0.225 Sum_probs=40.8
Q ss_pred hHHHHHhhhccCcCHHHHHHHHHc-CCCCHHH-Hhhc--cCcchHHHhhHhhHHhh
Q 012388 291 VRTISLFGEVWGIGPATAQKLYEK-GHRTLDD-LKNE--DSLTHSQRLGLKYFDDI 342 (464)
Q Consensus 291 ~~~l~lf~~I~GvGpktA~~ly~~-Girtled-L~~~--~~L~~~q~~Glk~~ed~ 342 (464)
...+.+|.+|+|||||+|..+... |..+|.. +... ..|++.+++|-|..+.|
T Consensus 84 r~lf~~L~sv~GIGpk~A~~Ils~~~~~~l~~aI~~~d~~~L~~vpGIG~KtA~rI 139 (212)
T 2ztd_A 84 RDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGAERM 139 (212)
T ss_dssp HHHHHHHHTSTTCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHHTSTTCCHHHHHHH
T ss_pred HHHHHHhcCcCCcCHHHHHHHHHhCCHHHHHHHHHhCCHHHHhhCCCCCHHHHHHH
Confidence 457777789999999999999986 8888874 3332 35889999999886654
No 94
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=93.38 E-value=0.047 Score=58.72 Aligned_cols=64 Identities=22% Similarity=0.324 Sum_probs=41.9
Q ss_pred chhhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHcCCCCHHHH
Q 012388 252 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDL 322 (464)
Q Consensus 252 s~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~GirtledL 322 (464)
...++.+++|||+++|..|-.-+-.-++..|...-.+.. ++++||||+|||+++.. |++-.+|.
T Consensus 91 ~~~~l~~v~GvGpk~A~~~~~~lg~~~~~~l~~a~~~~~------l~~~~GiG~k~a~~i~~-~l~~~~~~ 154 (575)
T 3b0x_A 91 GVLEVMEVPGVGPKTARLLYEGLGIDSLEKLKAALDRGD------LTRLKGFGPKRAERIRE-GLALAQAA 154 (575)
T ss_dssp HHHHHHTSTTTCHHHHHHHHHTSCCCSHHHHHHHHHHTG------GGGSTTCCHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHhcCCCcCHHHHHHHHHhcCCCCHHHHHHHHHcCC------cccCCCCCccHHHHHHH-HHHHHHHh
Confidence 357899999999999988754332234444443222222 67999999999999842 33334443
No 95
>3oq4_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA domain, regula subunit of DDK, CDC7, phosphorylation, nuclear; 2.40A {Saccharomyces cerevisiae}
Probab=93.29 E-value=0.16 Score=44.23 Aligned_cols=49 Identities=14% Similarity=0.337 Sum_probs=38.9
Q ss_pred CCCCCeEEEEecCC---CC-------chHHHHHHHHHHhcCCEEEeecCCCccEEEEcC
Q 012388 17 GIFAGMRVFLVEKG---VQ-------NRRLQIWRQKLVQMGATVEEKLSKKVTHVLAMD 65 (464)
Q Consensus 17 ~~F~g~~vy~~~~~---~g-------~~R~~~l~~~i~~~Gg~V~~~ls~~VTHVV~~~ 65 (464)
.|=+..+|||-.+. +. ..|.+.|++.+...||.|++-++.+|||||+.-
T Consensus 3 ~m~r~s~iyfd~~~~~~~~~~~~~k~~k~~~llk~~f~~LGa~I~~FFd~~VTiiITrR 61 (134)
T 3oq4_A 3 HMKRDSRIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLTLGAQITQFFDTTVTIVITRR 61 (134)
T ss_dssp CCCTTCEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHHTTCEEESSCCTTCCEEEESS
T ss_pred cccccceEEecCCchHHHHHHHHHhhHHHHHHHHHHHHHcCCEEeeecCCceEEEEeCC
Confidence 35578899996552 22 136688999999999999999999999999853
No 96
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=92.95 E-value=0.033 Score=51.65 Aligned_cols=51 Identities=27% Similarity=0.343 Sum_probs=37.5
Q ss_pred HHHHHhhhccCcCHHHHHHHHHc-CCCCHHH-Hhhc--cCcchHHHhhHhhHHhh
Q 012388 292 RTISLFGEVWGIGPATAQKLYEK-GHRTLDD-LKNE--DSLTHSQRLGLKYFDDI 342 (464)
Q Consensus 292 ~~l~lf~~I~GvGpktA~~ly~~-Girtled-L~~~--~~L~~~q~~Glk~~ed~ 342 (464)
..+..|.+|+|||||+|..+.+. |-.++.+ +.++ ..|++.+++|-|..+.|
T Consensus 69 ~~f~~L~~v~GIGpk~A~~iL~~f~~~~l~~aI~~~d~~~L~~vpGIG~K~A~rI 123 (191)
T 1ixr_A 69 ALFELLLSVSGVGPKVALALLSALPPRLLARALLEGDARLLTSASGVGRRLAERI 123 (191)
T ss_dssp HHHHHHHSSSCCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHTTSTTCCHHHHHHH
T ss_pred HHHHHHhcCCCcCHHHHHHHHHhCChHHHHHHHHhCCHHHHHhCCCCCHHHHHHH
Confidence 45667779999999999999986 7666654 3333 25788888887775554
No 97
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=92.57 E-value=0.064 Score=41.58 Aligned_cols=29 Identities=31% Similarity=0.384 Sum_probs=26.3
Q ss_pred hhhccCcCHHHHHHHHHcCCCCHHHHhhc
Q 012388 297 FGEVWGIGPATAQKLYEKGHRTLDDLKNE 325 (464)
Q Consensus 297 f~~I~GvGpktA~~ly~~GirtledL~~~ 325 (464)
+.+++|||+.++.+|-+.||.|++||-..
T Consensus 9 l~~L~Gi~~~~~~kL~e~Gi~TvedlA~~ 37 (70)
T 1wcn_A 9 LLNLEGVDRDLAFKLAARGVCTLEDLAEQ 37 (70)
T ss_dssp HHSSTTCCHHHHHHHHTTTCCSHHHHHTS
T ss_pred HHHcCCCCHHHHHHHHHcCCCcHHHHHcC
Confidence 44889999999999999999999999864
No 98
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=92.45 E-value=0.041 Score=51.47 Aligned_cols=52 Identities=15% Similarity=0.243 Sum_probs=38.1
Q ss_pred hHHHHHhhhccCcCHHHHHHHHHc-CCCCHHH-Hhhc--cCcchHHHhhHhhHHhh
Q 012388 291 VRTISLFGEVWGIGPATAQKLYEK-GHRTLDD-LKNE--DSLTHSQRLGLKYFDDI 342 (464)
Q Consensus 291 ~~~l~lf~~I~GvGpktA~~ly~~-Girtled-L~~~--~~L~~~q~~Glk~~ed~ 342 (464)
...+..|.+|+|||||+|..+... |-.+|-+ +.++ ..|++.+++|-|..+.|
T Consensus 69 k~~f~~L~~V~GIGpk~A~~iL~~f~~~~l~~aI~~~d~~~L~~vpGIG~K~A~rI 124 (203)
T 1cuk_A 69 RTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERL 124 (203)
T ss_dssp HHHHHHHHHSSSCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHHTSTTCCHHHHHHH
T ss_pred HHHHHHHhcCCCcCHHHHHHHHhhCChHHHHHHHHhCCHHHHhhCCCCCHHHHHHH
Confidence 345667779999999999999986 7666654 4433 24778888888876554
No 99
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=92.36 E-value=0.1 Score=53.53 Aligned_cols=48 Identities=29% Similarity=0.524 Sum_probs=31.9
Q ss_pred HHHhhhccCcCHHHHHHHHHc-C------CCCHHHHhhccCcchHH--H-hhHhhHHhh
Q 012388 294 ISLFGEVWGIGPATAQKLYEK-G------HRTLDDLKNEDSLTHSQ--R-LGLKYFDDI 342 (464)
Q Consensus 294 l~lf~~I~GvGpktA~~ly~~-G------irtledL~~~~~L~~~q--~-~Glk~~ed~ 342 (464)
..++++|+||||.+|++|.++ | .-|.+||+.++ +...| + .|++..+.+
T Consensus 467 eamLtAIaGIGp~tAeRLLEkFGSVe~Vm~AteDELRedG-IGekqarrI~gl~~l~~~ 524 (685)
T 4gfj_A 467 YASLISIRGIDRERAERLLKKYGGYSKVREAGVEELREDG-LTDAQIRELKGLKTLESI 524 (685)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHHTSHHHHHHSCHHHHHHTT-CCHHHHHHHHTCHHHHHH
T ss_pred eeeeeccCCCCHHHHHHHHHHhcCHHHHHhCCHHHHHHcc-ccHHHHHHHhhHHHHHHH
Confidence 577889999999999999987 5 25677776532 32222 2 365555544
No 100
>4dez_A POL IV 1, DNA polymerase IV 1; Y-family, transferase; HET: DNA; 2.60A {Mycobacterium smegmatis}
Probab=92.31 E-value=0.1 Score=52.54 Aligned_cols=40 Identities=33% Similarity=0.555 Sum_probs=30.8
Q ss_pred hhhccCcCHHHHHHHHHcCCCCHHHHhhccCcchHHHhhH
Q 012388 297 FGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGL 336 (464)
Q Consensus 297 f~~I~GvGpktA~~ly~~GirtledL~~~~~L~~~q~~Gl 336 (464)
...|||||++++++|.+.||+|+.||.+...-.-.++||.
T Consensus 180 v~~l~GiG~~~~~~L~~~GI~Ti~dL~~~~~~~L~~~fG~ 219 (356)
T 4dez_A 180 PDALWGVGPKTTKKLAAMGITTVADLAVTDPSVLTTAFGP 219 (356)
T ss_dssp GGGSTTCCHHHHHHHHHTTCCSHHHHHTSCHHHHHHHHCH
T ss_pred HHHHcCCchhHHHHHHHcCCCeecccccCCHHHHHHHhCC
Confidence 3589999999999999999999999986432222344664
No 101
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=92.13 E-value=0.027 Score=61.63 Aligned_cols=49 Identities=29% Similarity=0.297 Sum_probs=41.5
Q ss_pred hhccCcCHHHHHHHHHc-CCCCHHHHhhc--cCcchHHHhhHhhHHhhccCC
Q 012388 298 GEVWGIGPATAQKLYEK-GHRTLDDLKNE--DSLTHSQRLGLKYFDDIKTRI 346 (464)
Q Consensus 298 ~~I~GvGpktA~~ly~~-GirtledL~~~--~~L~~~q~~Glk~~ed~~~~i 346 (464)
++|+|+|+|++.+||+. +|++++||... .+|..+.+||-|..+.|...|
T Consensus 449 ldI~GLG~k~i~~L~~~g~I~~~aDL~~L~~~~L~~l~gfG~Ksa~nLl~aI 500 (671)
T 2owo_A 449 MDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGLERMGPKSAQNVVNAL 500 (671)
T ss_dssp TCCTTCCHHHHHHHHHTTCCSSGGGGGTCCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHcCCCCCHHHHHhhCHHHhhcccccchhHHHHHHHHH
Confidence 49999999999999999 57999999854 357777889999988887655
No 102
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=91.95 E-value=0.035 Score=60.70 Aligned_cols=49 Identities=27% Similarity=0.372 Sum_probs=41.7
Q ss_pred hccCcCHHHHHHHHHc-CCCCHHHHhhcc--CcchHHHhhHhhHHhhccCCC
Q 012388 299 EVWGIGPATAQKLYEK-GHRTLDDLKNED--SLTHSQRLGLKYFDDIKTRIP 347 (464)
Q Consensus 299 ~I~GvGpktA~~ly~~-GirtledL~~~~--~L~~~q~~Glk~~ed~~~~i~ 347 (464)
.|.|+|+|++++||+. +++|+.||.... +|..+.+||-|..+.|.+.|-
T Consensus 445 dI~GLG~k~i~~L~~~g~I~~~~DL~~L~~e~L~~l~g~G~Ksa~nLl~aIe 496 (667)
T 1dgs_A 445 DIEGLGEKLIERLLEKGLVRDVADLYHLRKEDLLGLERMGEKSAQNLLRQIE 496 (667)
T ss_dssp CCTTCCHHHHHHHHHTTSCSSGGGGGGGCCHHHHTTSSCCSTTHHHHHHHHH
T ss_pred CcCcCCHHHHHHHHHcCCCCCHHHHHhcCHHHHhcccccchhhHHHHHHHHH
Confidence 8999999999999999 689999998643 577778899998888876653
No 103
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A
Probab=91.19 E-value=0.33 Score=49.91 Aligned_cols=60 Identities=17% Similarity=0.242 Sum_probs=44.4
Q ss_pred HHHHHHHHhhhcCCCEEEEEcccccccCCc-CCCccEEEeCCCcchhhhHHHHHHHHHHhc
Q 012388 354 MERLLQKAGEEVLPEVIILCGGSYRRGKAS-CGDLDVVIMHPDRKSHKGFLSKYVKKLKEM 413 (464)
Q Consensus 354 i~~iv~~~~~~~~p~~~v~~~GsyRRgke~-~gDvDiLit~~d~~~~~~~l~~lv~~L~~~ 413 (464)
+...|+.++....|++.|.+.|||+.|--. ..|||++|..+.......++.++.+.|++.
T Consensus 68 v~~~l~~~i~~~~p~~~v~~fGS~~~G~~~~~SDiDl~v~~~~~~~~~~~l~~l~~~L~~~ 128 (405)
T 4e8f_A 68 ALDTLRLCLKRISPDAELVAFGSLESGLALKNSDMDLCVLMDSRVQSDTIALQFYEELIAE 128 (405)
T ss_dssp HHHHHHHHHHHHCTTCEEEEESHHHHTCCBSSCCEEEEEECCC---CTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCCEEEEEeeccCCCCCCCCCEEEEEEecCCCCHHHHHHHHHHHHHhc
Confidence 334445555567899999999999999876 779999998876443345788888888876
No 104
>3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex, Y-family DNA polym translesion synthesis, nucleoside triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens} PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A* 3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 4ebc_A* 4ebd_A* ...
Probab=91.19 E-value=0.16 Score=52.55 Aligned_cols=41 Identities=29% Similarity=0.363 Sum_probs=30.9
Q ss_pred hhhccCcCHHHHHHHHHcCCCCHHHHhhccCcchHHHhhHh
Q 012388 297 FGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLK 337 (464)
Q Consensus 297 f~~I~GvGpktA~~ly~~GirtledL~~~~~L~~~q~~Glk 337 (464)
+..+||||++++++|.+.||+|+.||.+...-.-.+.||.+
T Consensus 236 v~~l~GIG~~t~~~L~~lGI~TigdLa~~~~~~L~~~fG~~ 276 (420)
T 3osn_A 236 IKEIPGIGYKTAKCLEALGINSVRDLQTFSPKILEKELGIS 276 (420)
T ss_dssp GGGSTTCCHHHHHHHHHTTCCSHHHHHHSCHHHHHHHHHHH
T ss_pred HHHccCCCHHHHHHHHHhCCCcHHHHhhCCHHHHHHHhCch
Confidence 46899999999999999999999999864321122445643
No 105
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=91.04 E-value=1.3 Score=41.07 Aligned_cols=124 Identities=15% Similarity=0.175 Sum_probs=72.3
Q ss_pred HHHHHHhcCCccccch--hhhcC-CC--CCC--HHHHHHHHHHHHh---CCchhhHHHHhhchhHHHHHhhhccCcCHHH
Q 012388 238 KAIPVIEKLPFKIESA--DQVKG-LP--GIG--KSMQDHIQEIVTT---GKLSKLEHFEKDEKVRTISLFGEVWGIGPAT 307 (464)
Q Consensus 238 rAa~~l~~lp~~I~s~--~~l~~-lp--gIG--~~ia~kI~Eil~t---G~~~~le~l~~~~~~~~l~lf~~I~GvGpkt 307 (464)
+|..+..+||..+... +++.+ |. |+| ..-|+.|.++.+. +.-..++.+....+..+++.|+++|||||+|
T Consensus 50 ~~~~~~~~L~~~l~~~~~e~l~~~ir~~G~g~~~~KA~~l~~~a~~~~~~~~~~l~~~~~~~~~~~~~~L~~lpGIG~kT 129 (207)
T 3fhg_A 50 SAYQALNCLGQKIYYANEEEIRNILKSCKYRFYNLKAKYIIMAREKVYGRLKEEIKPLADEDQQLARERLLNIKGIGMQE 129 (207)
T ss_dssp HHHHHHHHHGGGGGTCCHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHTTTHHHHHHHHHHHCHHHHHHHHTTSTTCCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHhhhhHHHHhCCCHHHHHHHHHcCCCcCHHH
Confidence 3444555555555433 34322 23 433 3456666666551 1112366666667778999999999999999
Q ss_pred HHHHHHc-CCCCHHHHh-hc-cCcchHHHhhHhhHHhhccCCCHHHHHHHHHHHHHHhhhc
Q 012388 308 AQKLYEK-GHRTLDDLK-NE-DSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEV 365 (464)
Q Consensus 308 A~~ly~~-GirtledL~-~~-~~L~~~q~~Glk~~ed~~~~i~r~Ea~~i~~iv~~~~~~~ 365 (464)
|..+-.. |+. +.- -+ .-..-++++|+-. +++.+.++..+-.+++..+...++.+
T Consensus 130 A~~il~~~~~~---~~~~vD~~v~Ri~~rlg~~~-~~~~k~~~~k~y~~~~~~l~~~~~~~ 186 (207)
T 3fhg_A 130 ASHFLRNVGYF---DLAIIDRHIIDFMRRIGAIG-ETNVKQLSKSLYISFENILKSIASNL 186 (207)
T ss_dssp HHHHHHHTTCC---SSCCCCHHHHHHHHHTTSSC-CCCCSCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCC---CcceecHHHHHHHHHcCCCC-ccccccCCHHHHHHHHHHHHHHHHHh
Confidence 9998764 662 222 11 1123345556432 12667788888888877777665443
No 106
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=90.95 E-value=0.078 Score=45.07 Aligned_cols=49 Identities=24% Similarity=0.333 Sum_probs=35.7
Q ss_pred HHHHhhhccCcCHHHHHHHHHcCCCCHHHHhhcc--CcchHHHhhHhhHHhh
Q 012388 293 TISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHSQRLGLKYFDDI 342 (464)
Q Consensus 293 ~l~lf~~I~GvGpktA~~ly~~GirtledL~~~~--~L~~~q~~Glk~~ed~ 342 (464)
.+..|.++ ||||.++++|.+.||.|+++|.... .|....+||-...++|
T Consensus 24 ~I~~L~~~-GIg~~~i~kL~eAG~~Tve~va~a~~~eL~~i~GIse~ka~kI 74 (114)
T 1b22_A 24 PISRLEQC-GINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKI 74 (114)
T ss_dssp CHHHHHHT-TCSHHHHHHHHTTCCSSGGGBTSSBHHHHHTTTTCSTTHHHHH
T ss_pred cHHHHHhc-CCCHHHHHHHHHcCcCcHHHHHhCCHHHHHHccCCCHHHHHHH
Confidence 34555455 9999999999999999999998653 4666666665443333
No 107
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=90.73 E-value=0.39 Score=45.29 Aligned_cols=53 Identities=19% Similarity=0.260 Sum_probs=35.6
Q ss_pred CCCHHHHHHHHHHH---HhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHc
Q 012388 261 GIGKSMQDHIQEIV---TTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK 314 (464)
Q Consensus 261 gIG~~ia~kI~Eil---~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~ 314 (464)
|++..=++.|.++. ..|.+ .++.+..-....+++.|++++||||+||..+--.
T Consensus 110 G~~~~KA~~i~~lA~~~~~g~~-~l~~l~~~~~~e~~~~L~~l~GIG~~TA~~ill~ 165 (225)
T 2yg9_A 110 GLSWAKVRTVQAAAAAAVSGQI-DFAHLSGQPDELVIAELVQLPGIGRWTAEMFLLF 165 (225)
T ss_dssp TCCHHHHHHHHHHHHHHHTTSS-CGGGCTTSCHHHHHHHHHTSTTCCHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHhCCc-CHHHHhcCCHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 67665444444443 34664 3455554455668888999999999999987654
No 108
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Probab=90.70 E-value=0.13 Score=51.61 Aligned_cols=30 Identities=37% Similarity=0.412 Sum_probs=26.8
Q ss_pred hhhccCcCHHHHHHHHHcCCCCHHHHhhcc
Q 012388 297 FGEVWGIGPATAQKLYEKGHRTLDDLKNED 326 (464)
Q Consensus 297 f~~I~GvGpktA~~ly~~GirtledL~~~~ 326 (464)
+..+||||++++++|.+.||+|+.||.+..
T Consensus 180 v~~l~GiG~~~~~~L~~~Gi~t~~dL~~~~ 209 (352)
T 1jx4_A 180 IADVPGIGNITAEKLKKLGINKLVDTLSIE 209 (352)
T ss_dssp GGGSTTCCHHHHHHHHTTTCCBGGGGGSSC
T ss_pred CCcccccCHHHHHHHHHcCCchHHHHHCCC
Confidence 468999999999999989999999998643
No 109
>1ylq_A Putative nucleotidyltransferase, hypothetical Pro AF0614; structural genomics, PSI, protein ST initiative; 2.02A {Archaeoglobus fulgidus} SCOP: d.218.1.5
Probab=90.58 E-value=0.43 Score=38.69 Aligned_cols=31 Identities=32% Similarity=0.362 Sum_probs=25.6
Q ss_pred cCCCEEEEEcccccccCCcCC--CccEEEeCCC
Q 012388 365 VLPEVIILCGGSYRRGKASCG--DLDVVIMHPD 395 (464)
Q Consensus 365 ~~p~~~v~~~GsyRRgke~~g--DvDiLit~~d 395 (464)
..+...+.+-|||=||..+-+ |||++|..++
T Consensus 14 ~~~~~~v~LFGS~ArG~~~~~~SDiDllV~~~~ 46 (96)
T 1ylq_A 14 DVQDAEIYLYGSVVEGDYSIGLSDIDVAIVSDV 46 (96)
T ss_dssp HCTTCEEEEESHHHHCCSSSCCCSEEEEEECGG
T ss_pred HcCCcEEEEEEEEEeCCCCCCCCceEEEEEeCC
Confidence 355578999999999998766 9999997654
No 110
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=90.53 E-value=0.049 Score=58.90 Aligned_cols=89 Identities=12% Similarity=0.126 Sum_probs=0.0
Q ss_pred hhhcCCCCC------CHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHcCCCCHHHHhhc--
Q 012388 254 DQVKGLPGI------GKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE-- 325 (464)
Q Consensus 254 ~~l~~lpgI------G~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~GirtledL~~~-- 325 (464)
++|.+|+|+ |++.++++.+-++.-+-. +-...|--| +|+|||+++|+.|.+ .+.|++.|.++
T Consensus 491 ~~L~~l~~~~~~~g~g~ksa~nLl~aIe~sk~~--------~l~r~L~aL-GIp~VG~~~ak~La~-~Fgsle~L~~As~ 560 (615)
T 3sgi_A 491 RDLLRTDLFRTKAGELSANGKRLLVNLDKAKAA--------PLWRVLVAL-SIRHVGPTAARALAT-EFGSLDAIAAAST 560 (615)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhhccccccccCccchHHHHHHHHHHHhcCC--------CHHHHHHHc-CCCCCCHHHHHHHHH-HcCCHHHHHhCCH
Confidence 567777755 577777766544432222 223455556 999999999999965 47799999875
Q ss_pred cCcchHHHhhHhhHHhhccCCCHHHHH
Q 012388 326 DSLTHSQRLGLKYFDDIKTRIPRHEVE 352 (464)
Q Consensus 326 ~~L~~~q~~Glk~~ed~~~~i~r~Ea~ 352 (464)
..|..+.++|.+..+.|..-+.-.+..
T Consensus 561 eeL~~I~GIG~~~A~sI~~ff~~~~n~ 587 (615)
T 3sgi_A 561 DQLAAVEGVGPTIAAAVTEWFAVDWHR 587 (615)
T ss_dssp ---------------------------
T ss_pred HHHhhCCCCCHHHHHHHHHHHcCHHHH
Confidence 358888999998888887776544443
No 111
>3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA repair, DNA synthesis, binding, magnesium, metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens}
Probab=90.38 E-value=0.18 Score=53.31 Aligned_cols=40 Identities=23% Similarity=0.291 Sum_probs=30.5
Q ss_pred hhhccCcCHHHHHHHHHcCCCCHHHHhhccCcchHHHhhH
Q 012388 297 FGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGL 336 (464)
Q Consensus 297 f~~I~GvGpktA~~ly~~GirtledL~~~~~L~~~q~~Gl 336 (464)
+..+||||++++++|.+.||+|+.||.+...-.-.+.||.
T Consensus 317 V~~l~GIG~~t~~kL~~lGI~TigDLa~~~~~~L~~~fG~ 356 (504)
T 3gqc_A 317 VTNLPGVGHSMESKLASLGIKTCGDLQYMTMAKLQKEFGP 356 (504)
T ss_dssp GGGSTTCCHHHHHHHHHTTCCBHHHHTTSCHHHHHHHHCH
T ss_pred hhHhhCcCHHHHHHHHHcCCCcHHHHHhccHHHHHHhhCh
Confidence 3588999999999999999999999986432222334554
No 112
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=90.30 E-value=0.62 Score=45.63 Aligned_cols=58 Identities=16% Similarity=0.233 Sum_probs=38.4
Q ss_pred hhhcCCCCCCHHHHHHHHHH---HHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHc
Q 012388 254 DQVKGLPGIGKSMQDHIQEI---VTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK 314 (464)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Ei---l~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~ 314 (464)
++|..+ |+|-+ ++-|.++ +..|.+ .++.+..-....+++.|++++||||+||...--.
T Consensus 170 e~L~~~-g~g~R-a~~I~~~A~~i~~g~~-~l~~l~~~~~~~~~~~L~~lpGIG~~TA~~ill~ 230 (290)
T 3i0w_A 170 KDFEEC-TAGFR-AKYLKDTVDRIYNGEL-NLEYIKSLNDNECHEELKKFMGVGPQVADCIMLF 230 (290)
T ss_dssp HHHHHT-TCGGG-HHHHHHHHHHHHTTSS-CHHHHHHSCHHHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHHc-CCchH-HHHHHHHHHHHHhCCC-CHHHHhcCCHHHHHHHHHhCCCcCHHHHHHHHHH
Confidence 455553 77865 4444443 345653 3455555456678899999999999999987543
No 113
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=89.99 E-value=0.33 Score=36.56 Aligned_cols=49 Identities=18% Similarity=0.375 Sum_probs=33.9
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHH-HHHHHH
Q 012388 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT-AQKLYE 313 (464)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpkt-A~~ly~ 313 (464)
+.|.+|||||++-+..+.. .-|++..+ ++- .++.+.+| +|.+. |+++|+
T Consensus 4 s~L~~IpGIG~kr~~~LL~--~Fgs~~~i---~~A----s~eeL~~v--ig~~~~A~~I~~ 53 (63)
T 2a1j_A 4 DFLLKMPGVNAKNCRSLMH--HVKNIAEL---AAL----SQDELTSI--LGNAANAKQLYD 53 (63)
T ss_dssp HHHHTSTTCCHHHHHHHHH--HCSSHHHH---HTC----CHHHHHHH--HSCHHHHHHHHH
T ss_pred hHHHcCCCCCHHHHHHHHH--HcCCHHHH---HHC----CHHHHHHH--cCchHHHHHHHH
Confidence 4578999999988776643 45555554 332 23445566 78999 999997
No 114
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=89.95 E-value=0.048 Score=51.83 Aligned_cols=50 Identities=24% Similarity=0.510 Sum_probs=0.0
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHH
Q 012388 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 313 (464)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~ 313 (464)
..|.+|||||++.++++.+.. |++..+.. ...+.|.+| |||+++|+.+|+
T Consensus 173 s~L~~IpGIG~k~ak~Ll~~F--GSl~~i~~-------As~eeL~~V-GIG~~~A~~I~~ 222 (226)
T 3c65_A 173 SVLDDIPGVGEKRKKALLNYF--GSVKKMKE-------ATVEELQRA-NIPRAVAEKIYE 222 (226)
T ss_dssp ------------------------------------------------------------
T ss_pred ccccccCCCCHHHHHHHHHHh--CCHHHHHh-------CCHHHHHHc-CCCHHHHHHHHH
Confidence 468899999999999887643 55554422 234557799 999999999986
No 115
>1no5_A Hypothetical protein HI0073; structural genomics, nucleotidyl transferase structure 2 function project, S2F, unknown function; 1.80A {Haemophilus influenzae} SCOP: d.218.1.5
Probab=89.91 E-value=1.1 Score=37.31 Aligned_cols=63 Identities=24% Similarity=0.395 Sum_probs=39.9
Q ss_pred CCHHHHHHHHHHHHHHhhhcCCCEEEEEcccccccCC-cCCCccEEEeCCCcchhhhHHHHHHHHHHhc
Q 012388 346 IPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKA-SCGDLDVVIMHPDRKSHKGFLSKYVKKLKEM 413 (464)
Q Consensus 346 i~r~Ea~~i~~iv~~~~~~~~p~~~v~~~GsyRRgke-~~gDvDiLit~~d~~~~~~~l~~lv~~L~~~ 413 (464)
++..+.+.+..++++ ..+...+.+-|||=||.. ...||||+|..++..+... +.++...|.+.
T Consensus 9 l~~~~~~~i~~~l~~----~~~v~~v~LFGS~ArG~~~~~SDIDl~V~~~~~~~~~~-~~~l~~~l~~~ 72 (114)
T 1no5_A 9 IKSEELAIVKTILQQ----LVPDYTVWAFGSRVKGKAKKYSDLDLAIISEEPLDFLA-RDRLKEAFSES 72 (114)
T ss_dssp SCHHHHHHHHHHHHH----HCTTSEEEEEGGGTTTCCCTTCCEEEEEECSSCCCHHH-HHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHH----hCCCCEEEEEeccCCCCCCCCCCeEEEEEeCCCCCHHH-HHHHHHHHHhc
Confidence 444555555555554 234458899999999974 4489999997665433222 34566667664
No 116
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=89.77 E-value=0.2 Score=40.13 Aligned_cols=50 Identities=18% Similarity=0.383 Sum_probs=35.0
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHH-HHHHHHc
Q 012388 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPAT-AQKLYEK 314 (464)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpkt-A~~ly~~ 314 (464)
..|..|||||++-+..+.. .-|++..+... .++.|.+| ||.+. |+++|+-
T Consensus 18 s~L~~IpGIG~kr~~~LL~--~FgSl~~i~~A-------S~eEL~~v--ig~~~~A~~I~~~ 68 (84)
T 1z00_B 18 DFLLKMPGVNAKNCRSLMH--HVKNIAELAAL-------SQDELTSI--LGNAANAKQLYDF 68 (84)
T ss_dssp HHHHTCSSCCHHHHHHHHH--HSSCHHHHHHS-------CHHHHHHH--HSCHHHHHHHHHH
T ss_pred HHHHhCCCCCHHHHHHHHH--HcCCHHHHHHC-------CHHHHHHH--hCchHHHHHHHHH
Confidence 4588999999988877643 45565555432 23444566 78999 9999984
No 117
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=89.70 E-value=0.23 Score=54.15 Aligned_cols=37 Identities=27% Similarity=0.481 Sum_probs=31.3
Q ss_pred HhhchhHHHHHhhhccCcCHHHHHHHHHcCCCCHHHHh
Q 012388 286 EKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK 323 (464)
Q Consensus 286 ~~~~~~~~l~lf~~I~GvGpktA~~ly~~GirtledL~ 323 (464)
..-.+...+.|. +|+|||+.+|++||+.|++|++||.
T Consensus 649 ~~gv~~e~~~L~-qlp~i~~~rar~L~~~g~~s~~~l~ 685 (715)
T 2va8_A 649 RDGIKEELLELV-QISGVGRKRARLLYNNGIKELGDVV 685 (715)
T ss_dssp HHTCCGGGHHHH-TSTTCCHHHHHHHHHTTCCSHHHHH
T ss_pred HcCCChhhcchh-hCCCCCHHHHHHHHHcCCCCHHHHh
Confidence 334455566776 9999999999999999999999998
No 118
>3t7k_A RTT107, regulator of TY1 transposition protein 107; BRCT, DNA repair, phospho-peptide, protein binding; HET: SEP; 2.03A {Saccharomyces cerevisiae} PDB: 3t7j_A* 3t7i_A
Probab=89.47 E-value=0.26 Score=47.31 Aligned_cols=67 Identities=15% Similarity=0.225 Sum_probs=49.2
Q ss_pred HHHHHhcCCEEEeecC--CCccEEEEcCChHHHHHHHHHhhhccCc--cccccchHHHHHhc---CC------CCCcccc
Q 012388 40 RQKLVQMGATVEEKLS--KKVTHVLAMDLEALLQQVSKQHLARFKG--SVIRYQWLEDSLRL---GE------KVSEDLY 106 (464)
Q Consensus 40 ~~~i~~~Gg~V~~~ls--~~VTHVV~~~~~~~~~~l~~~~~~~~~~--~iV~~~Wl~ec~k~---g~------lvdee~y 106 (464)
.+.++..|-.|+++.+ ..++|+++..--|-...|+ .-++.| .+|+.+|+++|++. |+ +++.++|
T Consensus 40 ~~~Lr~LGI~Iv~d~~~~~~~n~LiAPkilRT~KFL~---sLa~~P~~~il~p~FI~~~Lk~ih~~~~~~~~~~l~~~dY 116 (256)
T 3t7k_A 40 IEILNQLGIKIFDNIKETDKLNCIFAPKILRTEKFLK---SLSFEPLKFALKPEFIIDLLKQIHSKKDKLSQININLFDY 116 (256)
T ss_dssp HHHHHHTTEEECSSCCGGGCCCEEECSSCCCBHHHHH---HTTSTTCCEEECTHHHHHHHHHHC-------CCCCCSSTT
T ss_pred HHHHHHcCeEEEecCcccCCCCEEEcCchhhHHHHHH---HhccCccceEeCHHHHHHHHHHhhcCCcccccccCChhhc
Confidence 5889999999999985 4799999966444222222 112334 59999999999999 88 8889999
Q ss_pred ccc
Q 012388 107 RIK 109 (464)
Q Consensus 107 ~l~ 109 (464)
.+.
T Consensus 117 ~L~ 119 (256)
T 3t7k_A 117 EIN 119 (256)
T ss_dssp BCT
T ss_pred cCC
Confidence 974
No 119
>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A
Probab=89.34 E-value=0.16 Score=50.94 Aligned_cols=30 Identities=33% Similarity=0.549 Sum_probs=26.8
Q ss_pred hhhccCcCHHHHHHHHHcCCCCHHHHhhcc
Q 012388 297 FGEVWGIGPATAQKLYEKGHRTLDDLKNED 326 (464)
Q Consensus 297 f~~I~GvGpktA~~ly~~GirtledL~~~~ 326 (464)
+..+||||++++++|.+.||+|+.||.+..
T Consensus 181 v~~l~GiG~~~~~~L~~~Gi~t~~dL~~~~ 210 (354)
T 3bq0_A 181 IDEIPGIGSVLARRLNELGIQKLRDILSKN 210 (354)
T ss_dssp STTSTTCCHHHHHHHTTTTCCBGGGGGGSC
T ss_pred cccccCcCHHHHHHHHHcCCccHHHHhcCC
Confidence 468899999999999888999999999643
No 120
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=88.96 E-value=0.29 Score=39.98 Aligned_cols=43 Identities=19% Similarity=0.232 Sum_probs=30.6
Q ss_pred HHHhhhccCcCHHHHHHHHHc-----CCCCHHHHhhccCcchHHHhhHhhHHhh
Q 012388 294 ISLFGEVWGIGPATAQKLYEK-----GHRTLDDLKNEDSLTHSQRLGLKYFDDI 342 (464)
Q Consensus 294 l~lf~~I~GvGpktA~~ly~~-----GirtledL~~~~~L~~~q~~Glk~~ed~ 342 (464)
...|..|+|||+++|+++.+. .+.+++||.+ +.++|.+.++.|
T Consensus 39 ~~~L~~ipGIG~~~A~~Il~~r~~~g~f~s~edL~~------v~Gig~k~~~~l 86 (98)
T 2edu_A 39 ARDLRSLQRIGPKKAQLIVGWRELHGPFSQVEDLER------VEGITGKQMESF 86 (98)
T ss_dssp HHHHHHSTTCCHHHHHHHHHHHHHHCCCSSGGGGGG------STTCCHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHhcCCcCCHHHHHh------CCCCCHHHHHHH
Confidence 344679999999999999862 4788888743 344565555554
No 121
>1im4_A DBH; DNA polymerase PALM, thumb, fingers, helix-hairpin-helix, fidelity, processivity, transferase; 2.30A {Sulfolobus solfataricus} SCOP: e.8.1.7
Probab=88.89 E-value=0.15 Score=48.01 Aligned_cols=29 Identities=34% Similarity=0.542 Sum_probs=23.5
Q ss_pred hhhccCcCHHHHHHHHHcCCCCHHHHhhc
Q 012388 297 FGEVWGIGPATAQKLYEKGHRTLDDLKNE 325 (464)
Q Consensus 297 f~~I~GvGpktA~~ly~~GirtledL~~~ 325 (464)
+..+||||++++++|.+.||+|+.||.+.
T Consensus 186 v~~l~giG~~~~~~L~~~Gi~TigdL~~~ 214 (221)
T 1im4_A 186 IDEIPGIGSVLARRLNELGIQKLRDILSK 214 (221)
T ss_dssp GGGSTTCCHHHHHHHHHTTCCBTTC----
T ss_pred cccccCCCHHHHHHHHHcCCCcHHHHHCC
Confidence 46899999999999999999999999853
No 122
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=88.66 E-value=0.23 Score=46.93 Aligned_cols=93 Identities=24% Similarity=0.329 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHh-CCchhhHHHHhhchhHHHHHhh-hccCcCHHHHHHHHHc-CCCCHHHHhh-c-cCcchHHHhhHhh
Q 012388 264 KSMQDHIQEIVTT-GKLSKLEHFEKDEKVRTISLFG-EVWGIGPATAQKLYEK-GHRTLDDLKN-E-DSLTHSQRLGLKY 338 (464)
Q Consensus 264 ~~ia~kI~Eil~t-G~~~~le~l~~~~~~~~l~lf~-~I~GvGpktA~~ly~~-GirtledL~~-~-~~L~~~q~~Glk~ 338 (464)
..=|..|.++.+. |. +.++.......+++.|+ +++|||+|||..+... |.. +..- + .-+.-+.++|+-
T Consensus 100 ~~KA~~I~~~a~~ig~---l~~~~~~~~~~~r~~L~~~l~GVG~kTA~~vL~~~g~~---~~~~VDthv~Ri~~rlg~~- 172 (219)
T 3n0u_A 100 QKRAEFIVENRKLLGK---LKNLVKGDPFQSREFLVRNAKGIGWKEASHFLRNTGVE---DLAILDKHVLRLMKRHGLI- 172 (219)
T ss_dssp HHHHHHHHHHGGGTTT---HHHHHHSCHHHHHHHHHHHSTTCCHHHHHHHHHTTTCC---SCCCCCHHHHHHHHHTTSC-
T ss_pred HHHHHHHHHHHHHHHH---HHHHhcCCcHHHHHHHHHhCCCCCHHHHHHHHHHcCCC---CeeeecHHHHHHHHHcCCC-
Confidence 4445555555442 22 34444455667899999 9999999999998654 552 1110 1 112234455542
Q ss_pred HHhhccCCCHHHHHHHHHHHHHHhhh
Q 012388 339 FDDIKTRIPRHEVEQMERLLQKAGEE 364 (464)
Q Consensus 339 ~ed~~~~i~r~Ea~~i~~iv~~~~~~ 364 (464)
+.+.+..+...-.+++..+.+.+.+
T Consensus 173 -~~~~k~~t~k~y~~ie~~~~~~a~~ 197 (219)
T 3n0u_A 173 -QEIPKGWSKKRYLYVEEILRKVAEA 197 (219)
T ss_dssp -SSCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred -CcCcCcCCHHHHHHHHHHHHHHHHH
Confidence 1233455666666666666665544
No 123
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=88.44 E-value=0.47 Score=46.58 Aligned_cols=59 Identities=19% Similarity=0.236 Sum_probs=42.8
Q ss_pred hhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHcCCC
Q 012388 255 QVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHR 317 (464)
Q Consensus 255 ~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~Gir 317 (464)
++..+ |++..=++-|.++.+.| .++.+..-....+++.|++|+||||+||..+--.++.
T Consensus 174 ~Lr~~-G~~~rKa~~i~~~A~~g---~l~~l~~~~~~e~~~~L~~lpGIG~~TA~~ill~~lg 232 (295)
T 2jhn_A 174 GLREC-GLSRRKAELIVEIAKEE---NLEELKEWGEEEAYEYLTSFKGIGRWTAELVLSIALG 232 (295)
T ss_dssp HHHHT-TCCHHHHHHHHHHHTCS---SGGGGGGSCHHHHHHHHHTSTTCCHHHHHHHHHHTTC
T ss_pred HHHHc-CCCHHHHHHHHHHHHCC---CHhhhhcCCHHHHHHHHhcCCCcCHHHHHHHHHHccC
Confidence 44443 78887788888888775 4444443344568888999999999999998766554
No 124
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=87.92 E-value=0.15 Score=55.71 Aligned_cols=53 Identities=25% Similarity=0.461 Sum_probs=37.0
Q ss_pred chhHHHHHhhhccCcCHHHHHHHHHcCCCCHHHHhhcc--CcchHHHhhHhhHHhh
Q 012388 289 EKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHSQRLGLKYFDDI 342 (464)
Q Consensus 289 ~~~~~l~lf~~I~GvGpktA~~ly~~GirtledL~~~~--~L~~~q~~Glk~~ed~ 342 (464)
.+...+.|+ +|||||..+|++||+.|++|+.||.+.. .+..+.++|-+-++++
T Consensus 641 v~~e~~~L~-qlp~v~~~rar~L~~~G~~s~~dl~~~~~~~l~~~~~~~~~i~~~~ 695 (720)
T 2zj8_A 641 IREELIPLM-QLPLVGRRRARALYNSGFRSIEDISQARPEELLKIEGIGVKTVEAI 695 (720)
T ss_dssp CCGGGGGGT-TSTTCCHHHHHHHHTTTCCSHHHHHTCCHHHHHTSTTCCHHHHHHH
T ss_pred CCccchhhh-hCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHHhHhHHHHHHHHH
Confidence 344445555 9999999999999999999999998643 2333344554444443
No 125
>4fh3_A Poly(A) RNA polymerase protein CID1; nucleotidyltransferase, poly(U) polymerase, transferase; 2.00A {Schizosaccharomyces pombe} PDB: 4fh5_A* 4fhp_A* 4fhv_A* 4fhw_A* 4fhy_A* 4fhx_A* 4ep7_A*
Probab=87.60 E-value=1.1 Score=44.49 Aligned_cols=61 Identities=18% Similarity=0.274 Sum_probs=45.1
Q ss_pred HHHHHHHhhhcCCCEEEEEcccccccCCc-CCCccEEEeCCCcchhhhHHHHHHHHHHhccc
Q 012388 355 ERLLQKAGEEVLPEVIILCGGSYRRGKAS-CGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKF 415 (464)
Q Consensus 355 ~~iv~~~~~~~~p~~~v~~~GsyRRgke~-~gDvDiLit~~d~~~~~~~l~~lv~~L~~~g~ 415 (464)
-+.|+.+.....|+++|.+-|||+-|--+ .+|||+.|..+.......++.++...+...++
T Consensus 41 ~~~l~~~i~~~~p~~~v~~fGS~~~g~~~~~SDiDl~v~~~~~~~~~~~~~~~~~~~~~~~~ 102 (349)
T 4fh3_A 41 LDTLRLCLKRISPDAELVAFGSLESGLALKNSDMDLCVLMDSRVQSDTIALQFYEELIAEGF 102 (349)
T ss_dssp HHHHHHHHHTTCTTCEEEEESHHHHTCCBSSCCEEEEEECCTTSCHHHHHHHHHHHHHHTTE
T ss_pred HHHHHHHHHHHCCCCEEEEEeeccCCCCCCCCCEEEEEecCCCCChHHHHHHHHHHHHhhcc
Confidence 33444555567899999999999998754 46999999887766566666777777766554
No 126
>2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A* 3osp_A*
Probab=87.48 E-value=0.32 Score=50.33 Aligned_cols=29 Identities=24% Similarity=0.510 Sum_probs=26.9
Q ss_pred hhhccCcCHHHHHHHHH--cCCCCHHHHhhc
Q 012388 297 FGEVWGIGPATAQKLYE--KGHRTLDDLKNE 325 (464)
Q Consensus 297 f~~I~GvGpktA~~ly~--~GirtledL~~~ 325 (464)
+..+||||++++++|.+ .||+|+.||.+.
T Consensus 243 v~~l~GiG~~~~~~L~~~~~GI~ti~dL~~~ 273 (434)
T 2aq4_A 243 LDDLPGVGHSTLSRLESTFDSPHSLNDLRKR 273 (434)
T ss_dssp GGGSTTCCHHHHHHHHHHTTCCCSHHHHHHH
T ss_pred cccccCcCHHHHHHHHHhcCCceEHHHHHhc
Confidence 46899999999999999 899999999875
No 127
>4f4y_A POL IV, DNA polymerase IV; Y-family polymerase, transferase-DNA complex; HET: DNA DCP; 2.34A {Sulfolobus acidocaldarius} PDB: 3bq0_A* 3bq1_A* 3bq2_A* 4hyk_A* 1k1q_A 1k1s_A
Probab=87.34 E-value=0.18 Score=50.93 Aligned_cols=30 Identities=33% Similarity=0.549 Sum_probs=26.8
Q ss_pred hhhccCcCHHHHHHHHHcCCCCHHHHhhcc
Q 012388 297 FGEVWGIGPATAQKLYEKGHRTLDDLKNED 326 (464)
Q Consensus 297 f~~I~GvGpktA~~ly~~GirtledL~~~~ 326 (464)
+..+||||++++++|.+.||+|+.||.+..
T Consensus 181 v~~l~GiG~~~~~~L~~~GI~Ti~dL~~~~ 210 (362)
T 4f4y_A 181 IDEIPGIGSVLARRLNELGIQKLRDILSKN 210 (362)
T ss_dssp STTSTTCCSTTHHHHHHTTCCBGGGGTTSC
T ss_pred hhhccCCCHHHHHHHHHcCCChHHHHhcCC
Confidence 357999999999999999999999998643
No 128
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=87.11 E-value=0.35 Score=45.13 Aligned_cols=49 Identities=20% Similarity=0.413 Sum_probs=36.1
Q ss_pred HHHHhhhccCcCHHHHHHHHHcCCCCHHHHhhcc--CcchHHHhhHhhHHhh
Q 012388 293 TISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHSQRLGLKYFDDI 342 (464)
Q Consensus 293 ~l~lf~~I~GvGpktA~~ly~~GirtledL~~~~--~L~~~q~~Glk~~ed~ 342 (464)
...+++.|+|||+++|+.|.+. +.|+++|.++. .|....++|.+..+.|
T Consensus 160 ~~~~L~~i~gVg~~~a~~Ll~~-fgs~~~l~~a~~e~L~~v~GiG~~~a~~i 210 (219)
T 2bgw_A 160 QLYILQSFPGIGRRTAERILER-FGSLERFFTASKAEISKVEGIGEKRAEEI 210 (219)
T ss_dssp HHHHHHTSTTCCHHHHHHHHHH-HSSHHHHTTCCHHHHHHSTTCCHHHHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHH-cCCHHHHHhCCHHHHhhCCCCCHHHHHHH
Confidence 4455779999999999999986 45688887643 4666667777665554
No 129
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=86.78 E-value=0.91 Score=42.98 Aligned_cols=60 Identities=22% Similarity=0.373 Sum_probs=37.6
Q ss_pred hhhcCCCCCCHHHHHHHHHHH---HhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHcC
Q 012388 254 DQVKGLPGIGKSMQDHIQEIV---TTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKG 315 (464)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil---~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~G 315 (464)
++|..+ |++..=|+.|.++. ..|.+ .++.+..-+...+++.|++++||||+||..+--.+
T Consensus 96 e~Lr~~-G~~~~KA~~I~~~A~~i~~~~~-~~~~l~~~p~~~~~~~L~~lpGIG~kTA~~ill~a 158 (233)
T 2h56_A 96 EALRQA-GVSKRKIEYIRHVCEHVESGRL-DFTELEGAEATTVIEKLTAIKGIGQWTAEMFMMFS 158 (233)
T ss_dssp HHHHHT-TCCHHHHHHHHHHHHHHHTTSS-CHHHHTTSCHHHHHHHHHTSTTCCHHHHHHHHHHT
T ss_pred HHHHHc-CCCHHHHHHHHHHHHHHHhCCC-CHHHHhcCCHHHHHHHHHhCCCcCHHHHHHHHHHh
Confidence 344333 67765455555444 34542 34444433445688889999999999999976543
No 130
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=86.01 E-value=1.2 Score=41.65 Aligned_cols=21 Identities=43% Similarity=0.667 Sum_probs=18.9
Q ss_pred hHHHHHhhhccCcCHHHHHHH
Q 012388 291 VRTISLFGEVWGIGPATAQKL 311 (464)
Q Consensus 291 ~~~l~lf~~I~GvGpktA~~l 311 (464)
...++.|.++||||||+|+++
T Consensus 22 ~~LI~~l~~LPGIG~KsA~Rl 42 (212)
T 3vdp_A 22 AKLIEELSKLPGIGPKTAQRL 42 (212)
T ss_dssp HHHHHHHHTSTTCCHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHH
Confidence 357889999999999999998
No 131
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=85.80 E-value=0.71 Score=51.37 Aligned_cols=51 Identities=16% Similarity=0.236 Sum_probs=41.9
Q ss_pred chhhhcCCCCCCHHHHHHHHHHHH-hCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHc
Q 012388 252 SADQVKGLPGIGKSMQDHIQEIVT-TGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK 314 (464)
Q Consensus 252 s~~~l~~lpgIG~~ia~kI~Eil~-tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~ 314 (464)
+.++|..|||||+..|+.|.++.+ .|.+...++| .+|+|+|+++.+++...
T Consensus 506 s~~~L~~v~GiG~~~A~~Iv~yR~~~G~f~sr~~L------------~~V~giG~k~~ekl~~F 557 (785)
T 3bzc_A 506 SAALLARISGLNSTLAQNIVAHRDANGAFRTRDEL------------KKVSRLGEKTFEQAAGF 557 (785)
T ss_dssp CHHHHHTSTTCCHHHHHHHHHHHHHHCCCSSGGGG------------GGSTTCCHHHHHHHGGG
T ss_pred CHHHHhhcCCCCHHHHHHHHHHHHhcCCCCCHHHH------------HhcCCCCHHHHHHhhhe
Confidence 457899999999999999999875 5777777665 37999999999887653
No 132
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=85.73 E-value=0.15 Score=54.91 Aligned_cols=49 Identities=29% Similarity=0.337 Sum_probs=41.2
Q ss_pred hhccCcCHHHHHHHHHcCC-CCHHHHhh--ccCcchHHHhhHhhHHhhccCC
Q 012388 298 GEVWGIGPATAQKLYEKGH-RTLDDLKN--EDSLTHSQRLGLKYFDDIKTRI 346 (464)
Q Consensus 298 ~~I~GvGpktA~~ly~~Gi-rtledL~~--~~~L~~~q~~Glk~~ed~~~~i 346 (464)
++|.|+|++++++||+.|+ +++.||.. ...|..+.+||-|..+.|...|
T Consensus 449 mdI~GlG~~~i~~L~~~g~i~~~~Dly~L~~~~L~~l~g~geKsa~nL~~aI 500 (586)
T 4glx_A 449 MDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGLERMGPKSAQNVVNAL 500 (586)
T ss_dssp TCCTTCCHHHHHHHHHTTCCSSGGGGGTCCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred ccCCCcCHHHHHHHHhcCCCCCHHHHhCCCHHHHhcccCccHHHHHHHHHHH
Confidence 4899999999999999975 99999974 3457777889999999887655
No 133
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=85.58 E-value=2.3 Score=42.03 Aligned_cols=61 Identities=15% Similarity=0.228 Sum_probs=40.5
Q ss_pred hhhccCcCHHHHHHHHHcCCCCHHHHhhccCcchHHHhhHhhHHhhccCCCHHHHHHHHHHHHHHhhhcCCCEEEE
Q 012388 297 FGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIIL 372 (464)
Q Consensus 297 f~~I~GvGpktA~~ly~~GirtledL~~~~~L~~~q~~Glk~~ed~~~~i~r~Ea~~i~~iv~~~~~~~~p~~~v~ 372 (464)
|.++||||+..++++++.|++|++||..... .+ + +.+. .++-..+.++.+++.. .|.+.+.
T Consensus 159 L~Qlp~i~~~~~~~l~~~~i~s~~~l~~~~~---~e-~-----~~ll-~~~~~~~~~v~~~~~~-----~P~l~v~ 219 (328)
T 3im1_A 159 LRQIPHFNNKILEKCKEINVETVYDIMALED---EE-R-----DEIL-TLTDSQLAQVAAFVNN-----YPNVELT 219 (328)
T ss_dssp GGGSTTCCHHHHHHHHHTTCCSHHHHHHSCH---HH-H-----HHHC-CCCHHHHHHHHHHHHH-----CCCEEEE
T ss_pred eeCCCCCCHHHHHHHHhCCCCCHHHHhcCCH---HH-H-----HhHh-CCCHHHHHHHHHHHHh-----CCCEEEE
Confidence 4599999999999999999999999985321 11 1 1111 3444555556555554 7877543
No 134
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=84.96 E-value=0.69 Score=50.33 Aligned_cols=41 Identities=27% Similarity=0.451 Sum_probs=33.5
Q ss_pred HHhhchhHHHHHhhhccCcCHHHHHHHHHcCCCCHHHHhhcc
Q 012388 285 FEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED 326 (464)
Q Consensus 285 l~~~~~~~~l~lf~~I~GvGpktA~~ly~~GirtledL~~~~ 326 (464)
+....+...+.|+ +|||||..+|+++|+.|++|+.||.+..
T Consensus 623 i~~gv~~~~~~L~-qlp~v~~~~ar~l~~~g~~s~~~l~~~~ 663 (702)
T 2p6r_A 623 IKHGVKEELLELV-RIRHIGRVRARKLYNAGIRNAEDIVRHR 663 (702)
T ss_dssp HHHTCCGGGHHHH-TSTTCCHHHHHHHHTTTCCSHHHHHHTH
T ss_pred HHcCCCcchHhhh-cCCCCCHHHHHHHHHcCCCCHHHHHhhh
Confidence 4444555566766 9999999999999999999999998543
No 135
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A*
Probab=84.41 E-value=0.46 Score=47.17 Aligned_cols=58 Identities=17% Similarity=0.224 Sum_probs=39.7
Q ss_pred HHHHHHHHHhcCCEEEeec-CCCccEEEEcC--ChH-HHHHHHHHhhhccCccccccchHHHHHhc
Q 012388 36 LQIWRQKLVQMGATVEEKL-SKKVTHVLAMD--LEA-LLQQVSKQHLARFKGSVIRYQWLEDSLRL 97 (464)
Q Consensus 36 ~~~l~~~i~~~Gg~V~~~l-s~~VTHVV~~~--~~~-~~~~l~~~~~~~~~~~iV~~~Wl~ec~k~ 97 (464)
+..|++.+.+.|+.++ .+ ++.+||||+.. ... -.+.+. .+-+ +.+||+.+||.+.-+.
T Consensus 126 ~~~L~~~L~~LGik~v-~~~~detTHlVm~krnT~KvTvK~L~--ALI~-gkPIV~~~Fl~al~~~ 187 (325)
T 3huf_A 126 LSQWASNLNLLGIPTG-LRDSDATTHFVMNRQAGSSITVGTMY--AFLK-KTVIIDDSYLQYLSTV 187 (325)
T ss_dssp HHHHHHHHHTTTCCEE-SSCCTTCCEEECCCCCSSCCCHHHHH--HHHT-TCEEECHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCEEE-EccCCCEEEEEEeccccccchHHHHH--HHHC-CCcEecHHHHHHHHHh
Confidence 4458999999999999 77 78899999963 111 011111 1112 5689999999997543
No 136
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=83.98 E-value=0.49 Score=48.09 Aligned_cols=52 Identities=21% Similarity=0.254 Sum_probs=28.4
Q ss_pred hHHHHHhhhccCcCHHHHHHHHHcCCCCHHHHhhcc--CcchHHHhhHhhHHhhc
Q 012388 291 VRTISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHSQRLGLKYFDDIK 343 (464)
Q Consensus 291 ~~~l~lf~~I~GvGpktA~~ly~~GirtledL~~~~--~L~~~q~~Glk~~ed~~ 343 (464)
....+++.+||+||++.|++|.+. |-||+.|.++. .|....++|-+....|.
T Consensus 311 prGyRiLs~IPrl~~~iae~Lv~~-FGsLq~Il~AS~eEL~~VeGIGe~rAr~Ir 364 (377)
T 3c1y_A 311 ARGYRLLKTVARIPLSIGYNVVRM-FKTLDQISKASVEDLKKVEGIGEKRARAIS 364 (377)
T ss_dssp CCSHHHHHHTSCCCHHHHHHHHHH-HCSHHHHTTCCHHHHTTSTTCCHHHHHHHH
T ss_pred chHHHHHhhCCCCCHHHHHHHHHH-hCCHHHHHhCCHHHHHhccCccHHHHHHHH
Confidence 344556666666666666666663 33555555442 34445555555555444
No 137
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=83.92 E-value=0.91 Score=42.81 Aligned_cols=31 Identities=32% Similarity=0.584 Sum_probs=25.6
Q ss_pred HHHhhhccCcCHHHHHHHHHcCCCCHHHHhhc
Q 012388 294 ISLFGEVWGIGPATAQKLYEKGHRTLDDLKNE 325 (464)
Q Consensus 294 l~lf~~I~GvGpktA~~ly~~GirtledL~~~ 325 (464)
-..|.+|+|||+++|+.|.+. +.|++.|.++
T Consensus 167 ~s~LdgIpGIG~k~ak~Ll~~-FgSl~~i~~A 197 (220)
T 2nrt_A 167 RSVLDNVPGIGPIRKKKLIEH-FGSLENIRSA 197 (220)
T ss_dssp HHHHTTSTTCCHHHHHHHHHH-HCSHHHHHTS
T ss_pred cccccCCCCcCHHHHHHHHHH-cCCHHHHHhC
Confidence 445679999999999999996 3389998865
No 138
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=83.84 E-value=0.21 Score=47.39 Aligned_cols=49 Identities=14% Similarity=0.273 Sum_probs=0.0
Q ss_pred HHHhhhccCcCHHHHHHHHHcCCCCHHHHhhcc--CcchHHHhhHhhHHhhcc
Q 012388 294 ISLFGEVWGIGPATAQKLYEKGHRTLDDLKNED--SLTHSQRLGLKYFDDIKT 344 (464)
Q Consensus 294 l~lf~~I~GvGpktA~~ly~~GirtledL~~~~--~L~~~q~~Glk~~ed~~~ 344 (464)
...|..|+|||+++|++|.+. +.|++.|.++. .|... ++|.+..+.|..
T Consensus 172 ~s~L~~IpGIG~k~ak~Ll~~-FGSl~~i~~As~eeL~~V-GIG~~~A~~I~~ 222 (226)
T 3c65_A 172 HSVLDDIPGVGEKRKKALLNY-FGSVKKMKEATVEELQRA-NIPRAVAEKIYE 222 (226)
T ss_dssp -----------------------------------------------------
T ss_pred cccccccCCCCHHHHHHHHHH-hCCHHHHHhCCHHHHHHc-CCCHHHHHHHHH
Confidence 345679999999999999885 67788887653 47777 888777666543
No 139
>3pzp_A DNA polymerase kappa; DNA nucleotidyltransferase, DNA binding nucleotide binding M binding, nucleus; HET: DNA TTD DTP; 3.34A {Homo sapiens}
Probab=83.48 E-value=0.72 Score=48.89 Aligned_cols=29 Identities=31% Similarity=0.351 Sum_probs=26.3
Q ss_pred hhhccCcCHHHHHHHHHcCCCCHHHHhhc
Q 012388 297 FGEVWGIGPATAQKLYEKGHRTLDDLKNE 325 (464)
Q Consensus 297 f~~I~GvGpktA~~ly~~GirtledL~~~ 325 (464)
+..|||||++++++|-..||+|+.||...
T Consensus 340 V~kl~GIG~~t~~~L~~lGI~TigDL~~~ 368 (517)
T 3pzp_A 340 IRKVSGIGKVTEKMLKALGIITCTELYQQ 368 (517)
T ss_dssp GGGSTTCCHHHHHHHHHTTCCBHHHHHHH
T ss_pred hhhhccccHHHHHHHHHhCCCcHHHHHhh
Confidence 35799999999999999999999999864
No 140
>1t94_A Polymerase (DNA directed) kappa; replication, DNA repair, Y-family DNA polymerase, translesion DNA synthesis, lesion bypass; 2.40A {Homo sapiens} SCOP: d.240.1.1 e.8.1.7 PDB: 2oh2_A* 2w7o_A* 2w7p_A* 3hed_A* 3in5_A*
Probab=82.90 E-value=0.87 Score=47.37 Aligned_cols=40 Identities=25% Similarity=0.200 Sum_probs=30.5
Q ss_pred hhhccCcCHHHHHHHHHcCCCCHHHHhhccCcchHHHhhHh
Q 012388 297 FGEVWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLK 337 (464)
Q Consensus 297 f~~I~GvGpktA~~ly~~GirtledL~~~~~L~~~q~~Glk 337 (464)
+..|||||++++++|-..||+|+.||.... -.-...||.+
T Consensus 284 v~~l~GiG~~~~~~L~~lGI~T~gdL~~~~-~~L~~~fG~~ 323 (459)
T 1t94_A 284 IRKVSGIGKVTEKMLKALGIITCTELYQQR-ALLSLLFSET 323 (459)
T ss_dssp GGGCTTSCHHHHHHHHHTTCCBHHHHHHTH-HHHHHHSCHH
T ss_pred HHhcCCcCHHHHHHHHHcCCCcHHHHHhhH-HHHHHHhChH
Confidence 468999999999999888999999998642 1123346644
No 141
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=82.73 E-value=1.2 Score=34.31 Aligned_cols=52 Identities=19% Similarity=0.369 Sum_probs=38.7
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHH
Q 012388 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 313 (464)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~ 313 (464)
+++..|||||..++.+..| .| +.-+|.+..- ..+-|..|.|++..+|.+++.
T Consensus 7 ~~l~~L~Gi~~~~~~kL~e---~G-i~TvedlA~~----~~~eL~~i~gise~kA~~ii~ 58 (70)
T 1wcn_A 7 DDLLNLEGVDRDLAFKLAA---RG-VCTLEDLAEQ----GIDDLADIEGLTDEKAGALIM 58 (70)
T ss_dssp HHHHSSTTCCHHHHHHHHT---TT-CCSHHHHHTS----CHHHHHTSSSCCHHHHHHHHH
T ss_pred hHHHHcCCCCHHHHHHHHH---cC-CCcHHHHHcC----CHHHHHHccCCCHHHHHHHHH
Confidence 5688999999999877653 44 4566766532 344556899999999999975
No 142
>1wot_A Putative minimal nucleotidyltransferase; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.218.1.5
Probab=82.51 E-value=2.1 Score=34.57 Aligned_cols=58 Identities=17% Similarity=0.176 Sum_probs=36.3
Q ss_pred HHHHHHHHHhhhcCCCEEEEEcccccccCCc-CCCccEEEeCCCcchhhhHHHHHHHHHHh
Q 012388 353 QMERLLQKAGEEVLPEVIILCGGSYRRGKAS-CGDLDVVIMHPDRKSHKGFLSKYVKKLKE 412 (464)
Q Consensus 353 ~i~~iv~~~~~~~~p~~~v~~~GsyRRgke~-~gDvDiLit~~d~~~~~~~l~~lv~~L~~ 412 (464)
.+.+.+..++... +-..+.+-|||=||..+ ..||||+|..++..+... +.++...|++
T Consensus 11 ~l~~~i~~l~~~~-~v~~v~LFGS~arG~~~~~SDiDl~V~~~~~~~~~~-~~~l~~~l~~ 69 (98)
T 1wot_A 11 ARREAVLSLCARH-GAVRVRVFGSVARGEAREDSDLDLLVAFEEGRTLLD-HARLKLALEG 69 (98)
T ss_dssp HHHHHHHHHHHHH-TCSSCEECSHHHHTCCCTTCCCEEEECCCSSCCHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCcEEEEEccccCCCCCCCCCEEEEEEeCCCCCHHH-HHHHHHHHHH
Confidence 3566666665543 32368889999999864 589999996544332222 3445555654
No 143
>2rff_A Putative nucleotidyltransferase; NP_343093.1, nucleotidyltransferase domain, structural genomics; HET: MSE; 1.40A {Sulfolobus solfataricus P2}
Probab=82.25 E-value=3 Score=34.70 Aligned_cols=42 Identities=17% Similarity=0.389 Sum_probs=30.4
Q ss_pred HHHHHHHHhhhcCCCE-EEEEcccccccCC-cCCCccEEEeCCCc
Q 012388 354 MERLLQKAGEEVLPEV-IILCGGSYRRGKA-SCGDLDVVIMHPDR 396 (464)
Q Consensus 354 i~~iv~~~~~~~~p~~-~v~~~GsyRRgke-~~gDvDiLit~~d~ 396 (464)
+.+++..+... .|++ .+.+-|||=||.. ...||||+|..++.
T Consensus 19 l~~~~~~l~~~-~~~v~~v~LFGS~ArG~~~~~SDIDl~V~~~~~ 62 (111)
T 2rff_A 19 AKEIVEEVASS-FPNLEEVYIFGSRARGDYLDTSDIDILFVFKGI 62 (111)
T ss_dssp HHHHHHHHHHH-CTTEEEEEEESHHHHSCCCTTCCEEEEEEESSC
T ss_pred HHHHHHHHHHH-cCCccEEEEEeeeecCCCCCCCCEEEEEEecCC
Confidence 45566665543 4676 6889999999985 35899999966543
No 144
>4ecq_A DNA polymerase ETA; transferase-DNA complex; HET: DNA DTP; 1.50A {Homo sapiens} PDB: 3mr2_A* 3mr4_A* 3mr5_A* 3si8_A* 4dl2_A* 4dl3_A* 4dl4_A* 4dl5_A* 4dl6_A* 4dl7_A* 3mr3_A* 4ecr_A* 4ecs_A* 4ect_A* 4ecu_A* 4ecv_A* 4ecw_A* 4ecx_A* 4ecy_A* 4ecz_A* ...
Probab=81.88 E-value=0.71 Score=47.76 Aligned_cols=39 Identities=10% Similarity=0.174 Sum_probs=28.3
Q ss_pred hhhccCcCHHHHHH-HHHcCCCCHHHHhhccCcchHHHhh
Q 012388 297 FGEVWGIGPATAQK-LYEKGHRTLDDLKNEDSLTHSQRLG 335 (464)
Q Consensus 297 f~~I~GvGpktA~~-ly~~GirtledL~~~~~L~~~q~~G 335 (464)
+..+||||++++++ |...||+|+.||.....-.-.++||
T Consensus 255 v~~l~GiG~~~~~~lL~~lGI~TigdLa~~~~~~L~~~fG 294 (435)
T 4ecq_A 255 IRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSHFG 294 (435)
T ss_dssp GGGSTTCSSHHHHHHHHHHTCCBGGGGGGSCHHHHHHHHC
T ss_pred HHHhcCCCHHHHHHHHHHcCCCcHHHHhhCCHHHHHHHhC
Confidence 35899999999877 5677999999998653222233455
No 145
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=81.04 E-value=3 Score=41.38 Aligned_cols=28 Identities=11% Similarity=0.177 Sum_probs=26.1
Q ss_pred hhhccCcCHHHHHHHHHcCCCCHHHHhh
Q 012388 297 FGEVWGIGPATAQKLYEKGHRTLDDLKN 324 (464)
Q Consensus 297 f~~I~GvGpktA~~ly~~GirtledL~~ 324 (464)
|.++||||+..++++++.|++|++||.+
T Consensus 163 L~Qlp~i~~~~~~~l~~~~i~s~~~l~~ 190 (339)
T 2q0z_X 163 LKQLPHFTSEHIKRCTDKGVESVFDIME 190 (339)
T ss_dssp GGGSTTCCHHHHHHHHHTTCCSHHHHHH
T ss_pred eecCCCCCHHHHHHHHhcCCCCHHHHHh
Confidence 4599999999999999999999999985
No 146
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=80.76 E-value=1 Score=42.54 Aligned_cols=49 Identities=22% Similarity=0.457 Sum_probs=35.5
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCH-HHHHHHHH
Q 012388 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGP-ATAQKLYE 313 (464)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGp-ktA~~ly~ 313 (464)
..|.+|||||++.++++-.. -|++.. +.+.. .+.|.+| ||+ ++|+.+|+
T Consensus 168 s~LdgIpGIG~k~ak~Ll~~--FgSl~~---i~~As----~EeL~~V--IG~~~~A~~I~~ 217 (220)
T 2nrt_A 168 SVLDNVPGIGPIRKKKLIEH--FGSLEN---IRSAS----LEEIARV--IGSTEIARRVLD 217 (220)
T ss_dssp HHHTTSTTCCHHHHHHHHHH--HCSHHH---HHTSC----HHHHHHH--HTCHHHHHHHHH
T ss_pred ccccCCCCcCHHHHHHHHHH--cCCHHH---HHhCC----HHHHHHH--hChHHHHHHHHH
Confidence 45899999999999988764 355444 44322 3445677 999 99999986
No 147
>1q79_A Poly(A) polymerase alpha; mRNA processing, nucleotidyl transferase, transferase; HET: 3AT; 2.15A {Bos taurus} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1q78_A* 1f5a_A*
Probab=80.69 E-value=1.8 Score=45.79 Aligned_cols=53 Identities=25% Similarity=0.379 Sum_probs=41.3
Q ss_pred CCCEEEEEcccccccCCc-CCCccEEEeCCCcchhhhHHHHHHHHHHhcccccc
Q 012388 366 LPEVIILCGGSYRRGKAS-CGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLRE 418 (464)
Q Consensus 366 ~p~~~v~~~GsyRRgke~-~gDvDiLit~~d~~~~~~~l~~lv~~L~~~g~l~~ 418 (464)
.++++|.+.||||-|--. .+|||+++..|.......+|..+.+.|++...+++
T Consensus 92 ~~~~~v~~FGS~~lG~~~p~SDID~~~v~p~~~~~~dff~~l~~~L~~~~~v~~ 145 (514)
T 1q79_A 92 NVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDRSDFFTSFYDKLKLQEEVKD 145 (514)
T ss_dssp TCBCEEEEEHHHHHTCCCTTCCEEEEEEECTTSCHHHHTTHHHHHHHTCTTEEE
T ss_pred cCCceEEEeeeeccCCCCCCCceeEEEecCCcCCHHHHHHHHHHHHhcCccCce
Confidence 468899999999998753 47999999888665456788888888987655544
No 148
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=80.48 E-value=0.87 Score=42.99 Aligned_cols=22 Identities=41% Similarity=0.576 Sum_probs=19.5
Q ss_pred hHHHHHhhhccCcCHHHHHHHH
Q 012388 291 VRTISLFGEVWGIGPATAQKLY 312 (464)
Q Consensus 291 ~~~l~lf~~I~GvGpktA~~ly 312 (464)
...++.|.++||||||+|+++-
T Consensus 8 ~~LI~~l~~LPGIG~KSA~RlA 29 (228)
T 1vdd_A 8 VSLIRELSRLPGIGPKSAQRLA 29 (228)
T ss_dssp HHHHHHHHTSTTCCHHHHHHHH
T ss_pred HHHHHHHhHCCCCCHHHHHHHH
Confidence 4578899999999999999985
No 149
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=79.76 E-value=0.88 Score=44.70 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=22.1
Q ss_pred hccCcCHHHHHHHHHcCCCCHHHHhhc
Q 012388 299 EVWGIGPATAQKLYEKGHRTLDDLKNE 325 (464)
Q Consensus 299 ~I~GvGpktA~~ly~~GirtledL~~~ 325 (464)
+|+|||||||.+|.++ +.|||.|.+.
T Consensus 207 GVpGIG~KTA~kLL~~-~gsle~i~~~ 232 (290)
T 1exn_A 207 GVEGIGAKRGYNIIRE-FGNVLDIIDQ 232 (290)
T ss_dssp CCTTCCHHHHHHHHHH-HCSHHHHHHH
T ss_pred CCCcCCHhHHHHHHHH-cCCHHHHHHH
Confidence 3899999999999986 4589998754
No 150
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=79.12 E-value=1.3 Score=41.56 Aligned_cols=23 Identities=17% Similarity=0.150 Sum_probs=18.9
Q ss_pred HHHHHhhhccCcCHHHHHHHHHc
Q 012388 292 RTISLFGEVWGIGPATAQKLYEK 314 (464)
Q Consensus 292 ~~l~lf~~I~GvGpktA~~ly~~ 314 (464)
.+++.|++++|||++||..+--.
T Consensus 112 ~~~~~L~~lpGIG~~TA~~il~~ 134 (221)
T 1kea_A 112 RNRKAILDLPGVGKYTCAAVMCL 134 (221)
T ss_dssp SCHHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcHHHHHHHHHH
Confidence 35666779999999999998764
No 151
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=78.84 E-value=4.3 Score=39.71 Aligned_cols=21 Identities=19% Similarity=0.208 Sum_probs=16.4
Q ss_pred HHHhhh-ccCcCHHHHHHHHHc
Q 012388 294 ISLFGE-VWGIGPATAQKLYEK 314 (464)
Q Consensus 294 l~lf~~-I~GvGpktA~~ly~~ 314 (464)
++.|++ ++|||++||..+--.
T Consensus 127 ~~~Ll~~LpGIG~kTA~~iL~~ 148 (287)
T 3n5n_X 127 AETLQQLLPGVGRYTAGAIASI 148 (287)
T ss_dssp HHHHHHHSTTCCHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHH
Confidence 455556 999999999987643
No 152
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A*
Probab=78.62 E-value=3.3 Score=43.96 Aligned_cols=51 Identities=29% Similarity=0.449 Sum_probs=40.5
Q ss_pred CEEEEEcccccccCC-cCCCccEEEeCCCcchhhhHHHHHHHHHHhcccccc
Q 012388 368 EVIILCGGSYRRGKA-SCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLRE 418 (464)
Q Consensus 368 ~~~v~~~GsyRRgke-~~gDvDiLit~~d~~~~~~~l~~lv~~L~~~g~l~~ 418 (464)
+++|.+.||||-|-- -..|||+++..|.......+|..+.+.|++.+.+++
T Consensus 81 ~~~V~~FGSy~lG~~~p~SDID~~v~~p~~~~~~dff~~l~~~L~~~~~v~~ 132 (530)
T 2hhp_A 81 GGKIFTYGSYRLGVHGPGSDIDTLVVVPKHVTREDFFTVFDSLLRERKELDE 132 (530)
T ss_dssp BCEEEEEHHHHHTCCCTTCCEEEEEEECTTCCHHHHHHHHHHHHHTCTTEEE
T ss_pred CceEEEecccccCCCCCCCceeEEEecCCcCCHHHHHHHHHHHHhcCCCCce
Confidence 789999999999864 358999999888655556788889999987665544
No 153
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=77.99 E-value=1 Score=45.08 Aligned_cols=26 Identities=31% Similarity=0.714 Sum_probs=21.9
Q ss_pred hccCcCHHHHHHHHHcCCCCHHHHhhc
Q 012388 299 EVWGIGPATAQKLYEKGHRTLDDLKNE 325 (464)
Q Consensus 299 ~I~GvGpktA~~ly~~GirtledL~~~ 325 (464)
+|||||||||.+|.++ +.|||.+.+.
T Consensus 236 gipGiG~KtA~kll~~-~gsle~i~~~ 261 (341)
T 3q8k_A 236 SIRGIGPKRAVDLIQK-HKSIEEIVRR 261 (341)
T ss_dssp CCTTCCHHHHHHHHHH-HCSHHHHHHH
T ss_pred CCCCccHHHHHHHHHH-cCCHHHHHHH
Confidence 6999999999999997 2389988754
No 154
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A*
Probab=77.51 E-value=2.1 Score=42.89 Aligned_cols=61 Identities=18% Similarity=0.235 Sum_probs=42.1
Q ss_pred HHHHHHHHhhhcCCCEEEEEccccc-ccCC-cCCCccEEEeCCC----cc-----------hhhhHHHHHHHHHHhcccc
Q 012388 354 MERLLQKAGEEVLPEVIILCGGSYR-RGKA-SCGDLDVVIMHPD----RK-----------SHKGFLSKYVKKLKEMKFL 416 (464)
Q Consensus 354 i~~iv~~~~~~~~p~~~v~~~GsyR-Rgke-~~gDvDiLit~~d----~~-----------~~~~~l~~lv~~L~~~g~l 416 (464)
++.+|+. ..|+++|.+-|||+ -|-- -.+|||++|..+. +. ....+|.++-+.|++.++.
T Consensus 56 l~~~i~~----~~p~~~v~~FGS~~vtGl~lp~SDIDl~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~ 131 (353)
T 2ikf_A 56 VLDCVAA----VDPLMRLYTFGSTVVYGVHEKGSDVDFVVLNKTDVEDGKGGDAATQVAKGLQADILAKLARVIRQKHLS 131 (353)
T ss_dssp HHHHHHH----HCTTCEEEEESHHHHHSSCCTTCCEEEEEECHHHHHSTTCCCCCSHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHH----HCCCcEEEEecCccccCCCCCCcceeEEEeecccccccccccchhhhhhhhHHHHHHHHHHHHHhcCCC
Confidence 4444444 68999999999998 6653 4679999997542 10 0145777788888887765
Q ss_pred cc
Q 012388 417 RE 418 (464)
Q Consensus 417 ~~ 418 (464)
.+
T Consensus 132 ~~ 133 (353)
T 2ikf_A 132 WN 133 (353)
T ss_dssp SE
T ss_pred Cc
Confidence 43
No 155
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=77.30 E-value=2 Score=34.93 Aligned_cols=56 Identities=16% Similarity=0.222 Sum_probs=37.7
Q ss_pred chhhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHH
Q 012388 252 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 313 (464)
Q Consensus 252 s~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~ 313 (464)
|+.++..||+||+++++...++ -+.-+++|+..-+..+..-+... |..|-. ..||.
T Consensus 2 ~~~~L~~LPNiG~~~e~~L~~v----GI~s~e~L~~~Ga~~ay~rL~~~-~~~~c~-~~L~a 57 (93)
T 3bqs_A 2 SLANLSELPNIGKVLEQDLIKA----GIKTPVELKDVGSKEAFLRIWEN-DSSVCM-SELYA 57 (93)
T ss_dssp CCSCGGGSTTCCHHHHHHHHHT----TCCSHHHHHHHHHHHHHHHHHTT-CTTCCH-HHHHH
T ss_pred ChHHhhcCCCCCHHHHHHHHHc----CCCCHHHHHhCCHHHHHHHHHHH-CCCCCH-HHHHH
Confidence 5788999999999988765443 45667777766666665555444 555544 55554
No 156
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A*
Probab=77.21 E-value=4 Score=42.64 Aligned_cols=87 Identities=23% Similarity=0.334 Sum_probs=56.1
Q ss_pred hHHHhhHhhHHhhccCCCHHHHH----HHHHHHHHHhhhcCCCEEEEEcccc-cccCC-cCCCccEEEeCCCcc-hh-h-
Q 012388 330 HSQRLGLKYFDDIKTRIPRHEVE----QMERLLQKAGEEVLPEVIILCGGSY-RRGKA-SCGDLDVVIMHPDRK-SH-K- 400 (464)
Q Consensus 330 ~~q~~Glk~~ed~~~~i~r~Ea~----~i~~iv~~~~~~~~p~~~v~~~Gsy-RRgke-~~gDvDiLit~~d~~-~~-~- 400 (464)
....+|-.-.+...++.+-+++. .+.+-++.++++..|++.|.+.||| +-|.- -++|||+++..++.. .. .
T Consensus 16 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~~l~~~v~~~~p~a~v~~FGS~v~~Gl~lp~SDiDl~~~~~~~~~~~~~~ 95 (468)
T 2b4v_A 16 HYAVWGKAIMAENNRRVGPEHMFRTAIRAQQQLQGLADKWTPDAKVYCCGSMVTYGQMERGSDLDLACMFDDPYPSHEVQ 95 (468)
T ss_dssp HHHHHHHHHHHHHHHHBCCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEETHHHHHSSCBTTCCEEEEEECSSSSCCHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeeCchhcCCCCCCCceeEEEecCCCCccchhh
Confidence 34556666666666555543332 2334455566667899999999999 66774 589999999876432 11 1
Q ss_pred -hHHHHHHHHHHhc--ccc
Q 012388 401 -GFLSKYVKKLKEM--KFL 416 (464)
Q Consensus 401 -~~l~~lv~~L~~~--g~l 416 (464)
..+.+|...|++. |++
T Consensus 96 ~~~~~~l~~~L~~~~~~~~ 114 (468)
T 2b4v_A 96 AKRTDKLRTVIKRYVPHYL 114 (468)
T ss_dssp HHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHHHHhccccc
Confidence 1234577888877 754
No 157
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=76.74 E-value=2.5 Score=39.60 Aligned_cols=94 Identities=18% Similarity=0.211 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHhCCchhhHHHHh-hchhHHHHHhh-hccCcCHHHHHHHHHc-CCCCHH--HHhhccCcchHHHhhHhhH
Q 012388 265 SMQDHIQEIVTTGKLSKLEHFEK-DEKVRTISLFG-EVWGIGPATAQKLYEK-GHRTLD--DLKNEDSLTHSQRLGLKYF 339 (464)
Q Consensus 265 ~ia~kI~Eil~tG~~~~le~l~~-~~~~~~l~lf~-~I~GvGpktA~~ly~~-Girtle--dL~~~~~L~~~q~~Glk~~ 339 (464)
.=|..|.++.+-|. -++.+.. .....+++.|+ ++||||+|||.-+... |...+. |.- -..-.+++|+-.
T Consensus 95 ~KA~~I~~~a~~~~--l~~~~~~~~~~~~~re~Ll~~LpGVG~KTA~~vL~~~g~~~~~vVDth---v~Ri~~RlG~~~- 168 (214)
T 3fhf_A 95 KRAEYIVLARRFKN--IKDIVESFENEKVAREFLVRNIKGIGYKEASHFLRNVGYDDVAIIDRH---ILRELYENNYID- 168 (214)
T ss_dssp HHHHHHHHHGGGCC--HHHHHHHSSSHHHHHHHHHHHSTTCCHHHHHHHHHHTTCCSCCCCCHH---HHHHHHHTTSSS-
T ss_pred HHHHHHHHHHHhhH--HHHHhcccCCcHHHHHHHHHhCCCCCHHHHHHHHHHcCCCCcccCcHH---HHHHHHHcCCCC-
Confidence 34555665554221 2344433 24566888898 9999999999986543 553322 111 122344556432
Q ss_pred HhhccCCCHHHHHHHHHHHHHHhhhc
Q 012388 340 DDIKTRIPRHEVEQMERLLQKAGEEV 365 (464)
Q Consensus 340 ed~~~~i~r~Ea~~i~~iv~~~~~~~ 365 (464)
...+.+|...-.+++..+...++.+
T Consensus 169 -~~~k~lt~~~y~e~~~~l~~~g~~~ 193 (214)
T 3fhf_A 169 -EIPKTLSRRKYLEIENILRDIGEEV 193 (214)
T ss_dssp -SCCSSCCHHHHHHHHHHHHHHHHHT
T ss_pred -CCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 1235567766677766666655543
No 158
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ...
Probab=76.69 E-value=2.9 Score=42.17 Aligned_cols=53 Identities=15% Similarity=0.216 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHHH---HhCC--chhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHc
Q 012388 261 GIGKSMQDHIQEIV---TTGK--LSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK 314 (464)
Q Consensus 261 gIG~~ia~kI~Eil---~tG~--~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~ 314 (464)
|+|.+ |+.|.++. ..|. --.|+.+..-....+++.|++++||||+||..+--.
T Consensus 215 Gl~~R-A~~I~~~A~~i~~~~~G~~~L~~l~~~~~~~~~~~L~~LpGIGp~TA~~ill~ 272 (360)
T 2xhi_A 215 GLGYR-ARYVSASARAILEEQGGLAWLQQLRESSYEEAHKALCILPGVGTCVADKICLM 272 (360)
T ss_dssp TCTTH-HHHHHHHHHHHHHTTCTHHHHHGGGTSCHHHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred CCcHH-HHHHHHHHHHHHhccCCccCHHHHhcCCHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 55654 45555443 2332 123566654455678999999999999999997654
No 159
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=76.42 E-value=1.5 Score=41.15 Aligned_cols=22 Identities=23% Similarity=0.293 Sum_probs=18.2
Q ss_pred HHHHhhhccCcCHHHHHHHHHc
Q 012388 293 TISLFGEVWGIGPATAQKLYEK 314 (464)
Q Consensus 293 ~l~lf~~I~GvGpktA~~ly~~ 314 (464)
+++.|++++|||++||..+--.
T Consensus 107 ~~~~L~~lpGIG~~TA~~il~~ 128 (225)
T 1kg2_A 107 TFEEVAALPGVGRSTAGAILSL 128 (225)
T ss_dssp SHHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHHhcCCCCcHHHHHHHHHH
Confidence 5677789999999999987653
No 160
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=75.25 E-value=1.7 Score=40.30 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=18.8
Q ss_pred HHHHHhhhccCcCHHHHHHHHHc
Q 012388 292 RTISLFGEVWGIGPATAQKLYEK 314 (464)
Q Consensus 292 ~~l~lf~~I~GvGpktA~~ly~~ 314 (464)
.+++.|++++|||++||..+--.
T Consensus 106 ~~~~~L~~l~GIG~~tA~~il~~ 128 (211)
T 2abk_A 106 EDRAALEALPGVGRKTANVVLNT 128 (211)
T ss_dssp SCHHHHHHSTTCCHHHHHHHHHH
T ss_pred HHHHHHHhCCCCChHHHHHHHHH
Confidence 45677789999999999987653
No 161
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=73.06 E-value=0.71 Score=49.88 Aligned_cols=63 Identities=11% Similarity=0.074 Sum_probs=0.0
Q ss_pred hccCcCHHHHHHHHHcC-CCCHHHHhh--ccCcchHHHh------hHhhHHhhccCCCHHHHHHHHHHHHHH
Q 012388 299 EVWGIGPATAQKLYEKG-HRTLDDLKN--EDSLTHSQRL------GLKYFDDIKTRIPRHEVEQMERLLQKA 361 (464)
Q Consensus 299 ~I~GvGpktA~~ly~~G-irtledL~~--~~~L~~~q~~------Glk~~ed~~~~i~r~Ea~~i~~iv~~~ 361 (464)
+|-|+|++++++|++.| |+++.||-. ...|..+.++ |-|..+.|...|-...-..+..++-.+
T Consensus 461 dI~GlG~~~i~~L~~~g~i~~~aDly~L~~~~L~~l~~~~~~~g~g~ksa~nLl~aIe~sk~~~l~r~L~aL 532 (615)
T 3sgi_A 461 DIEVLGYEAGVALLQAKVIADEGELFALTERDLLRTDLFRTKAGELSANGKRLLVNLDKAKAAPLWRVLVAL 532 (615)
T ss_dssp ------------------------------------------------------------------------
T ss_pred CccccCHHHHHHHHHCCCcCCHHHHhhCCHHHHhhccccccccCccchHHHHHHHHHHHhcCCCHHHHHHHc
Confidence 89999999999999997 699999864 3345555555 578888888877655444455555443
No 162
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z*
Probab=73.00 E-value=1.9 Score=43.32 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=23.6
Q ss_pred hhccCcCHHHHHHHHHc-CCCCHHHHhh
Q 012388 298 GEVWGIGPATAQKLYEK-GHRTLDDLKN 324 (464)
Q Consensus 298 ~~I~GvGpktA~~ly~~-GirtledL~~ 324 (464)
-+|+|||+|||.+|.++ |-.||+.+.+
T Consensus 228 pgv~GiG~ktA~kli~~~~~~~l~~il~ 255 (352)
T 3qe9_Y 228 SSLRGIGLAKACKVLRLANNPDIVKVIK 255 (352)
T ss_dssp CCCTTCCHHHHHHHHHHCCCSCHHHHHT
T ss_pred CCCCCeeHHHHHHHHHHhCCCCHHHHHH
Confidence 37999999999999998 6678988875
No 163
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=72.54 E-value=2.8 Score=48.02 Aligned_cols=47 Identities=11% Similarity=0.017 Sum_probs=38.2
Q ss_pred hhhcCCCCCCHHHHHHHHHHH-H-hCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHH
Q 012388 254 DQVKGLPGIGKSMQDHIQEIV-T-TGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY 312 (464)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil-~-tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly 312 (464)
..|.-|+|||++.|+.|.++. + .|.+...++|. +|+|+|+|+-.+.-
T Consensus 717 ~lL~~v~GlGp~kA~~Iv~~r~~~~G~f~sr~~L~------------~v~~iG~k~fe~~a 765 (1030)
T 3psf_A 717 SALKYISGFGKRKAIDFLQSLQRLNEPLLARQQLI------------THNILHKTIFMNSA 765 (1030)
T ss_dssp TTGGGSTTCCHHHHHHHHHHHHHTCSCCCCTTHHH------------HTTSSCHHHHHHHT
T ss_pred HHHhhCCCCCHHHHHHHHHHHHHhCCCCCCHHHHH------------hcCCccHHHHHhcc
Confidence 568899999999999999998 4 68877666543 68999999877664
No 164
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=72.17 E-value=4.4 Score=49.02 Aligned_cols=29 Identities=10% Similarity=0.148 Sum_probs=26.8
Q ss_pred hhhccCcCHHHHHHHHHcCCCCHHHHhhc
Q 012388 297 FGEVWGIGPATAQKLYEKGHRTLDDLKNE 325 (464)
Q Consensus 297 f~~I~GvGpktA~~ly~~GirtledL~~~ 325 (464)
|.+|||||+.+|+++|+.||+|+.||.+.
T Consensus 1559 L~qip~i~~~~ar~l~~~gi~t~~dl~~~ 1587 (1724)
T 4f92_B 1559 LKQLPHFTSEHIKRCTDKGVESVFDIMEM 1587 (1724)
T ss_dssp GGGSTTCCHHHHHHHHHHTCCSHHHHHSS
T ss_pred EecCCCCCHHHHHHHHHCCCCCHHHHHhC
Confidence 46999999999999999999999999864
No 165
>2pbe_A AAD6, aminoglycoside 6-adenylyltransferase; NYSGXRC, aminoglycoside 6-adenyltransferase, PSI-2, structural genomics; 2.65A {Bacillus subtilis} SCOP: a.160.1.5 d.218.1.13
Probab=72.11 E-value=9.3 Score=37.26 Aligned_cols=94 Identities=12% Similarity=0.154 Sum_probs=45.2
Q ss_pred HHHHHHHHhhhcCCCEE-EEEcccccccC---CcCCCccEEEeCCCcchhhhHHHHHHHHHHhcccc---cccccccccC
Q 012388 354 MERLLQKAGEEVLPEVI-ILCGGSYRRGK---ASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFL---REDLIFSTHS 426 (464)
Q Consensus 354 i~~iv~~~~~~~~p~~~-v~~~GsyRRgk---e~~gDvDiLit~~d~~~~~~~l~~lv~~L~~~g~l---~~~L~~~~~~ 426 (464)
+..|++-+. .++.++ |.+.||+-++. ..=.|+||++...+..+ +. .+..+| -+.|.....+
T Consensus 10 ~~~i~~~a~--~d~rI~Av~l~GSr~n~~~~~D~fSDyDi~~vv~d~~~-------~~---~~~~wl~~fg~~l~~~~~e 77 (294)
T 2pbe_A 10 MDIFLDFAL--NDERIRLVTLEGSRTNRNIPPDNFQDYDISYFVTDVES-------FK---ENDQWLEIFGKRIMMQKPE 77 (294)
T ss_dssp HHHHHHHHH--HCTTEEEEEEC------------CCCEEEEEEESCHHH-------HH---TCSGGGGGGCCEEEEECTT
T ss_pred HHHHHHHHc--CCcCEEEEEEecCCCCCCCCCCCcccceEEEEEcCchH-------hh---hhHHHHHHHhhHHhhcccc
Confidence 344444333 378885 67888876644 77789999998766532 11 122222 2233221111
Q ss_pred CC-C-CCCCCceEEEEeecCCCCcceeeeEEEecCccc
Q 012388 427 EE-G-TDSGVDTYFGLCTYPGRELRHRIDFKVLASLSL 462 (464)
Q Consensus 427 ~~-~-~~~~~~~~~g~~~~p~~~~~rRiDi~~~P~~~~ 462 (464)
.. . .......|.-+|.+.. ..||||.++|.+.+
T Consensus 78 ~~~~~~~~~~~~~~~l~lf~d---g~rIDl~~~~~~~l 112 (294)
T 2pbe_A 78 DMELFPPELGNWFSYIILFED---GNKLDLTLIPIREA 112 (294)
T ss_dssp SCSSSCCCSTTCEEEEEEETT---SCEEEEEEEEGGGH
T ss_pred ccccCcccCCCceeEEEEecC---CcEEEEEEecHHHH
Confidence 00 0 0001123455788855 34999999998875
No 166
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=71.87 E-value=1.8 Score=40.40 Aligned_cols=24 Identities=21% Similarity=0.170 Sum_probs=19.8
Q ss_pred HHHHHhhhccCcCHHHHHHHHHcC
Q 012388 292 RTISLFGEVWGIGPATAQKLYEKG 315 (464)
Q Consensus 292 ~~l~lf~~I~GvGpktA~~ly~~G 315 (464)
.+++.|++++||||+||..+--.+
T Consensus 118 ~~~~~L~~lpGIG~kTA~~il~~a 141 (218)
T 1pu6_A 118 VTREWLLDQKGIGKESADAILCYA 141 (218)
T ss_dssp CCHHHHHTSTTCCHHHHHHHHHHT
T ss_pred HHHHHHHcCCCcCHHHHHHHHHHH
Confidence 467777899999999999987653
No 167
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=71.87 E-value=0.93 Score=45.37 Aligned_cols=51 Identities=22% Similarity=0.168 Sum_probs=35.9
Q ss_pred HHHhhhccCcCHHHHHHHHHc----CCCCHHHHhhccC----cchHHHhhHhhHHhhcc
Q 012388 294 ISLFGEVWGIGPATAQKLYEK----GHRTLDDLKNEDS----LTHSQRLGLKYFDDIKT 344 (464)
Q Consensus 294 l~lf~~I~GvGpktA~~ly~~----GirtledL~~~~~----L~~~q~~Glk~~ed~~~ 344 (464)
+..+++|||||+++|+++.+- .++.+++|+..-. |+...++|.+....|-+
T Consensus 56 ~~~l~~lpGIG~~~A~kI~E~l~tG~~~~le~l~~~~p~l~ll~~v~GiG~k~a~~l~~ 114 (335)
T 2bcq_A 56 YQEACSIPGIGKRMAEKIIEILESGHLRKLDHISESVPVLELFSNIWGAGTKTAQMWYQ 114 (335)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHHHSSSCGGGGGCCTTHHHHHHHHTSTTCCHHHHHHHHH
T ss_pred HHHHhcCCCccHHHHHHHHHHHHcCCchHHHHHhhhhHHHHHHhcCCCcCHHHHHHHHH
Confidence 334679999999999998763 4677888854321 34666778777776643
No 168
>4gns_A Chitin biosynthesis protein CHS5; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=71.62 E-value=1.9 Score=39.15 Aligned_cols=71 Identities=17% Similarity=0.248 Sum_probs=49.4
Q ss_pred HHHHHHhcCCEEEee-cCCCccEEEEcCChH--HHHHHHHHhhhccCccccccchHHHHHhcCCCCCccccccccC
Q 012388 39 WRQKLVQMGATVEEK-LSKKVTHVLAMDLEA--LLQQVSKQHLARFKGSVIRYQWLEDSLRLGEKVSEDLYRIKLD 111 (464)
Q Consensus 39 l~~~i~~~Gg~V~~~-ls~~VTHVV~~~~~~--~~~~l~~~~~~~~~~~iV~~~Wl~ec~k~g~lvdee~y~l~~~ 111 (464)
+.+-+---|++-... +.-+.||.|+.|.+. ..+.+-+.+ .....||..+|+-.|--+++.|-...|-+..+
T Consensus 183 isqclshigarplqrhvaidtthfvcndldneesneelirak--hnnipivrpewvracevekrivgvrgfyldad 256 (290)
T 4gns_A 183 ISQCLSHIGARPLQRHVAIDTTHFVCNDLDNEESNEELIRAK--HNNIPIVRPEWVRACEVEKRIVGVRGFYLDAD 256 (290)
T ss_dssp HHHHHHHTTCCCCBSSCCTTCCEEECSCCTTCTTCHHHHHHH--HTTCCEECTHHHHHHHHTTSCCCSGGGBTTSC
T ss_pred HHHHHHHhCCchhhheeeeecceeeecCCCcccchHHHHhhh--ccCCCccCHHHHHHHhhhheeeeeeeEEEccc
Confidence 456677778876544 456789999965432 112222221 23678999999999999999999999888643
No 169
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=70.47 E-value=2.1 Score=42.63 Aligned_cols=26 Identities=15% Similarity=0.102 Sum_probs=21.7
Q ss_pred hccCcCHHHHHHHHHcCCCCHHHHhhc
Q 012388 299 EVWGIGPATAQKLYEKGHRTLDDLKNE 325 (464)
Q Consensus 299 ~I~GvGpktA~~ly~~GirtledL~~~ 325 (464)
+|+|||+|||.+|.++ +.|++.+.+.
T Consensus 239 Gv~GiG~KtA~kLl~~-~gsle~i~~~ 264 (336)
T 1rxw_A 239 GVKGVGVKKALNYIKT-YGDIFRALKA 264 (336)
T ss_dssp CCTTCCHHHHHHHHHH-HSSHHHHHHH
T ss_pred CCCCcCHHHHHHHHHH-cCCHHHHHHh
Confidence 6999999999999997 2378888754
No 170
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=70.26 E-value=2.2 Score=42.22 Aligned_cols=25 Identities=32% Similarity=0.326 Sum_probs=22.4
Q ss_pred hccCcCHHHHHHHHHcCCCCHHHHh-hc
Q 012388 299 EVWGIGPATAQKLYEKGHRTLDDLK-NE 325 (464)
Q Consensus 299 ~I~GvGpktA~~ly~~GirtledL~-~~ 325 (464)
+|+|||||||.+|.++ .|++.+. +.
T Consensus 229 GvpGiG~ktA~kli~~--gsle~i~~~~ 254 (326)
T 1a76_A 229 GVKGIGFKRAYELVRS--GVAKDVLKKE 254 (326)
T ss_dssp TTTTCCHHHHHHHHHH--TCHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHc--CCHHHHHHHH
Confidence 7999999999999998 8999986 54
No 171
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=69.88 E-value=1.2 Score=44.47 Aligned_cols=49 Identities=22% Similarity=0.288 Sum_probs=35.3
Q ss_pred HhhhccCcCHHHHHHHHHc----CCCCHHHHhhcc------CcchHHHhhHhhHHhhcc
Q 012388 296 LFGEVWGIGPATAQKLYEK----GHRTLDDLKNED------SLTHSQRLGLKYFDDIKT 344 (464)
Q Consensus 296 lf~~I~GvGpktA~~ly~~----GirtledL~~~~------~L~~~q~~Glk~~ed~~~ 344 (464)
-+++|||||+++|+++.+- -+.-+++|+.+. .|..+.++|.+....|-+
T Consensus 58 ~l~~LpGIG~~~A~kI~E~l~tG~~~~le~l~~~~~~~~l~~l~~V~GiGpk~a~~l~~ 116 (335)
T 2fmp_A 58 EAKKLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVD 116 (335)
T ss_dssp HHHTSTTCCHHHHHHHHHHHHHSSCHHHHHHHHCHHHHHHHHHTTSTTCCHHHHHHHHH
T ss_pred HHhcCCCCcHHHHHHHHHHHHhCCcHHHHHHHcccchhHHHHHhCCCCCCHHHHHHHHH
Confidence 4679999999999998863 457778887542 256667777777666643
No 172
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Probab=69.71 E-value=5.4 Score=39.61 Aligned_cols=53 Identities=21% Similarity=0.320 Sum_probs=38.4
Q ss_pred hcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHc--CCCC
Q 012388 256 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK--GHRT 318 (464)
Q Consensus 256 l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~--Girt 318 (464)
+..|||||++++++...+ -+..+.+|.+-.+....+.| |..++..+|+. |+..
T Consensus 180 v~~l~GiG~~~~~~L~~~----Gi~t~~dL~~~~~~~L~~~f------G~~~g~~l~~~a~G~d~ 234 (352)
T 1jx4_A 180 IADVPGIGNITAEKLKKL----GINKLVDTLSIEFDKLKGMI------GEAKAKYLISLARDEYN 234 (352)
T ss_dssp GGGSTTCCHHHHHHHHTT----TCCBGGGGGSSCHHHHHHHH------CHHHHHHHHHHHTTCCC
T ss_pred CCcccccCHHHHHHHHHc----CCchHHHHHCCCHHHHHHhc------ChhHHHHHHHHhCCCCC
Confidence 677899999888776542 46667777765666666777 77878888875 8854
No 173
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=69.49 E-value=6.4 Score=36.73 Aligned_cols=66 Identities=20% Similarity=0.227 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHHh-cCCcccc-chhhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcC
Q 012388 232 RSFSYYKAIPVIE-KLPFKIE-SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIG 304 (464)
Q Consensus 232 r~~aY~rAa~~l~-~lp~~I~-s~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvG 304 (464)
|+..-..+|..+. .+...+. ..++|..|||||+.+|+.|.-+. -|.-. + -....+.+.+..++|+.
T Consensus 85 kA~~l~~~a~~i~~~~~g~~p~~~~~L~~lpGIG~~TA~~il~~a-~~~~~----~--~vD~~v~Rv~~rl~~~~ 152 (225)
T 1kg2_A 85 RARNLHKAAQQVATLHGGKFPETFEEVAALPGVGRSTAGAILSLS-LGKHF----P--ILDGNVKRVLARCYAVS 152 (225)
T ss_dssp HHHHHHHHHHHHHHHSTTSCCCSHHHHHTSTTCCHHHHHHHHHHH-HCCSC----C--CCCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHhCCCchHHHHHHhcCCCCcHHHHHHHHHHh-CCCCc----c--eeCHHHHHHHHHHcCCC
Confidence 6666667776664 3433333 46889999999999999987654 23321 1 13345666666666654
No 174
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=68.94 E-value=1.5 Score=43.79 Aligned_cols=29 Identities=41% Similarity=0.602 Sum_probs=26.3
Q ss_pred HhhhccCcCHHHHHHHHHcCCCCHHHHhh
Q 012388 296 LFGEVWGIGPATAQKLYEKGHRTLDDLKN 324 (464)
Q Consensus 296 lf~~I~GvGpktA~~ly~~GirtledL~~ 324 (464)
.+..++|||+.++++|-+.||+|++++..
T Consensus 36 ~l~~l~Gi~~~~~~kL~~ag~~t~~~~~~ 64 (349)
T 1pzn_A 36 SIEDLPGVGPATAEKLREAGYDTLEAIAV 64 (349)
T ss_dssp CSSCCTTCCHHHHHHHHTTTCCSHHHHHT
T ss_pred cHHHcCCCCHHHHHHHHHcCCCcHHHHHh
Confidence 45678999999999999999999999974
No 175
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=68.76 E-value=4 Score=32.90 Aligned_cols=28 Identities=29% Similarity=0.393 Sum_probs=24.7
Q ss_pred hhhccCcCHHHHHHHHHcCCCCHHHHhh
Q 012388 297 FGEVWGIGPATAQKLYEKGHRTLDDLKN 324 (464)
Q Consensus 297 f~~I~GvGpktA~~ly~~GirtledL~~ 324 (464)
.+.|+||||..+++|-++||..--.|..
T Consensus 20 V~evpGIG~~~~~~L~~~Gf~kAy~lLG 47 (89)
T 1ci4_A 20 VGSLAGIGEVLGKKLEERGFDKAYVVLG 47 (89)
T ss_dssp GGGSTTCCHHHHHHHHHTTCCSHHHHHH
T ss_pred cccCCCcCHHHHHHHHHcCccHHHHHHH
Confidence 5799999999999999999998777763
No 176
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=68.17 E-value=1.6 Score=44.06 Aligned_cols=47 Identities=11% Similarity=0.118 Sum_probs=34.3
Q ss_pred hhhccCcCHHHHHHHHHc----CCCCHHHHhhcc------CcchHHHhhHhhHHhhc
Q 012388 297 FGEVWGIGPATAQKLYEK----GHRTLDDLKNED------SLTHSQRLGLKYFDDIK 343 (464)
Q Consensus 297 f~~I~GvGpktA~~ly~~----GirtledL~~~~------~L~~~q~~Glk~~ed~~ 343 (464)
+++|||||+++|+++.+- -++.+++|+.+. .|..+.++|.+....|-
T Consensus 63 l~~lpGIG~~~A~kI~E~l~tG~~~~le~L~~d~~~~~l~~l~~I~GvG~kta~~l~ 119 (360)
T 2ihm_A 63 LHGLPYFGEHSTRVIQELLEHGTCEEVKQVRCSERYQTMKLFTQVFGVGVKTANRWY 119 (360)
T ss_dssp GTTCTTCCHHHHHHHHHHHHHSCCHHHHHHHHSHHHHHHHHHHTSTTCCHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHHHHcCChHHHHHHhcccchHHHHHHhCCCCCCHHHHHHHH
Confidence 679999999999998763 567888887631 35566677766666553
No 177
>2fcl_A Hypothetical protein TM1012; putative nucleotidyltransferase, structural genomics, joint for structural genomics, JCSG; HET: MLY; 1.20A {Thermotoga maritima} SCOP: d.218.1.11 PDB: 2ewr_A
Probab=67.89 E-value=8.2 Score=34.55 Aligned_cols=70 Identities=13% Similarity=0.094 Sum_probs=45.7
Q ss_pred CCEEEEEcccc----cccCCcCCCccEEEeCCCcchhhhHHHHHHHHHHhcccccccccccccCCCCCCCCCceEEEEee
Q 012388 367 PEVIILCGGSY----RRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEEGTDSGVDTYFGLCT 442 (464)
Q Consensus 367 p~~~v~~~Gsy----RRgke~~gDvDiLit~~d~~~~~~~l~~lv~~L~~~g~l~~~L~~~~~~~~~~~~~~~~~~g~~~ 442 (464)
-++...++||| +=+-...+||||+|.. . -..++...|.+.|+-...+.- +....+|++-+.
T Consensus 32 ~~V~~~l~Gs~Al~~~G~~~~~~DIDi~i~~---~----da~~~~~~L~~~g~~~~~~~~--------~~~~~~~f~~~~ 96 (169)
T 2fcl_A 32 EXVNWVVTGSLSFALQGVPVEVHDIDIQTDE---E----GAYEIERIFSEFVSXXVRFSS--------TEXICSHFGELI 96 (169)
T ss_dssp SSCCEEEEHHHHHHHTTCCCCCCSEEEEECH---H----HHHHHHHHTGGGEEEEEEEEE--------CSSEEEEEEEEE
T ss_pred cCCCEEEeHHHHHHHcCCCCCCCccEEEecc---c----CHHHHHHHHHHHhhcccCCCc--------cccccceeeEEe
Confidence 46677888985 4566789999999932 2 235577788877765544321 112457777777
Q ss_pred cCCCCcceeeeEE
Q 012388 443 YPGRELRHRIDFK 455 (464)
Q Consensus 443 ~p~~~~~rRiDi~ 455 (464)
.++ .+||+.
T Consensus 97 i~~----v~VDlm 105 (169)
T 2fcl_A 97 IDG----IXVEIM 105 (169)
T ss_dssp ETT----EEEEEE
T ss_pred eCC----EEEEee
Confidence 665 478877
No 178
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=67.53 E-value=4 Score=47.49 Aligned_cols=47 Identities=11% Similarity=0.017 Sum_probs=37.1
Q ss_pred hhhcCCCCCCHHHHHHHHHHH-H-hCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHH
Q 012388 254 DQVKGLPGIGKSMQDHIQEIV-T-TGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLY 312 (464)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil-~-tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly 312 (464)
..|.-|+|||++.|+.|.++. + .|.+...++|. +|+|+|||+-.+.-
T Consensus 714 ~lL~~v~GlGp~kA~~Iv~~r~~~~G~f~sr~~L~------------~v~~iG~k~fe~~a 762 (1219)
T 3psi_A 714 SALKYISGFGKRKAIDFLQSLQRLNEPLLARQQLI------------THNILHKTIFMNSA 762 (1219)
T ss_dssp TTGGGSTTCCHHHHHHHHHHHHHHCSCCCCTTHHH------------HTTCSCHHHHHHHG
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHhCCCCCCHHHHh------------hCCCccHHHHHhcc
Confidence 457889999999999999998 4 58887666543 67899998866553
No 179
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=67.24 E-value=6.2 Score=30.58 Aligned_cols=23 Identities=4% Similarity=0.297 Sum_probs=20.6
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHh
Q 012388 254 DQVKGLPGIGKSMQDHIQEIVTT 276 (464)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~t 276 (464)
+++.+++|+|++..+.|.+.|+.
T Consensus 41 ~dLlki~n~G~kSl~EI~~~L~~ 63 (73)
T 1z3e_B 41 EDMMKVRNLGRKSLEEVKAKLEE 63 (73)
T ss_dssp HHHHTSTTCCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999864
No 180
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=65.66 E-value=2.7 Score=34.18 Aligned_cols=42 Identities=14% Similarity=0.237 Sum_probs=27.3
Q ss_pred chhhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHh
Q 012388 252 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLF 297 (464)
Q Consensus 252 s~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf 297 (464)
|+.+|..||+||+.+.+...++ -+.-+++|+.--+..+..-+
T Consensus 2 sm~~L~dLPNig~~~e~~L~~~----GI~t~~~Lr~~Ga~~ay~rL 43 (93)
T 3mab_A 2 SLANLSELPNIGKVLEQDLIKA----GIKTPVELKDVGSKEAFLRI 43 (93)
T ss_dssp -CCCGGGSTTCCHHHHHHHHHT----TCCSHHHHHHHCHHHHHHHH
T ss_pred CHHHHhhCCCCCHHHHHHHHHc----CCCCHHHHHhCCHHHHHHHH
Confidence 5778999999999987765443 45666666654444443333
No 181
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=65.65 E-value=3.1 Score=35.11 Aligned_cols=64 Identities=17% Similarity=0.268 Sum_probs=35.8
Q ss_pred chhhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHc-------CCCCHHHHhh
Q 012388 252 SADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-------GHRTLDDLKN 324 (464)
Q Consensus 252 s~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~-------GirtledL~~ 324 (464)
.+++|.++ |||...++|+. +.|. .-++.+..- .-+-|.+|+|||+.+|.+|.+. |+.|-.|+..
T Consensus 24 ~I~~L~~~-GIg~~~i~kL~---eAG~-~Tve~va~a----~~~eL~~i~GIse~ka~kIi~aA~kl~~~gF~ta~e~~~ 94 (114)
T 1b22_A 24 PISRLEQC-GINANDVKKLE---EAGF-HTVEAVAYA----PKKELINIKGISEAKADKILAEAAKLVPMGFTTATEFHQ 94 (114)
T ss_dssp CHHHHHHT-TCSHHHHHHHH---TTCC-SSGGGBTSS----BHHHHHTTTTCSTTHHHHHHHHHHHHSCCC---------
T ss_pred cHHHHHhc-CCCHHHHHHHH---HcCc-CcHHHHHhC----CHHHHHHccCCCHHHHHHHHHHHHHHcccCCCcHHHHHH
Confidence 44555555 99998877765 3443 344444322 2344669999999999999752 6777666653
No 182
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=65.61 E-value=3.7 Score=45.67 Aligned_cols=45 Identities=31% Similarity=0.507 Sum_probs=34.1
Q ss_pred HHHHhhhccCcCHHHHHHHHH---c--CCCCHHHHhhccCcchHHHhhHhhHHhhc
Q 012388 293 TISLFGEVWGIGPATAQKLYE---K--GHRTLDDLKNEDSLTHSQRLGLKYFDDIK 343 (464)
Q Consensus 293 ~l~lf~~I~GvGpktA~~ly~---~--GirtledL~~~~~L~~~q~~Glk~~ed~~ 343 (464)
...+|+.|+||||++|+.+.+ + +|+|.+||.+ ..++|.+.|+.+.
T Consensus 506 s~~~L~~v~GiG~~~A~~Iv~yR~~~G~f~sr~~L~~------V~giG~k~~ekl~ 555 (785)
T 3bzc_A 506 SAALLARISGLNSTLAQNIVAHRDANGAFRTRDELKK------VSRLGEKTFEQAA 555 (785)
T ss_dssp CHHHHHTSTTCCHHHHHHHHHHHHHHCCCSSGGGGGG------STTCCHHHHHHHG
T ss_pred CHHHHhhcCCCCHHHHHHHHHHHHhcCCCCCHHHHHh------cCCCCHHHHHHhh
Confidence 457788999999999999764 2 7899999975 3456666666554
No 183
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=65.33 E-value=6.6 Score=36.58 Aligned_cols=42 Identities=17% Similarity=0.248 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHhc-CCccc-cchhhhcCCCCCCHHHHHHHHHH
Q 012388 232 RSFSYYKAIPVIEK-LPFKI-ESADQVKGLPGIGKSMQDHIQEI 273 (464)
Q Consensus 232 r~~aY~rAa~~l~~-lp~~I-~s~~~l~~lpgIG~~ia~kI~Ei 273 (464)
|+..-..+|..+.. +...+ ...++|..|||||+.+|+.|--+
T Consensus 91 KA~~l~~~a~~i~~~~~g~~p~~~~~L~~lpGIG~~TA~~il~~ 134 (221)
T 1kea_A 91 RAEQLKELARVVINDYGGRVPRNRKAILDLPGVGKYTCAAVMCL 134 (221)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSCHHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCchHHHHHHHhCCCCcHHHHHHHHHH
Confidence 66666666666643 33333 34688999999999999988654
No 184
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=65.29 E-value=2 Score=43.41 Aligned_cols=24 Identities=29% Similarity=0.556 Sum_probs=20.2
Q ss_pred hccCcCHHHHHHHHHc-CCCCHHHHhh
Q 012388 299 EVWGIGPATAQKLYEK-GHRTLDDLKN 324 (464)
Q Consensus 299 ~I~GvGpktA~~ly~~-GirtledL~~ 324 (464)
+|+|||||||.+|.++ | |||.+.+
T Consensus 255 GVpGIG~KtA~kLl~~~g--sle~il~ 279 (363)
T 3ory_A 255 GFEGIGPKKALQLVKAYG--GIEKIPK 279 (363)
T ss_dssp CSTTCCHHHHHHHHHHHT--SSTTSCG
T ss_pred CCCCcCHHHHHHHHHHcC--CHHHHHH
Confidence 8889999999999986 5 6777654
No 185
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=64.56 E-value=2.6 Score=37.63 Aligned_cols=23 Identities=26% Similarity=0.189 Sum_probs=19.7
Q ss_pred chhhhcCCCCCCHHHHHHHHHHH
Q 012388 252 SADQVKGLPGIGKSMQDHIQEIV 274 (464)
Q Consensus 252 s~~~l~~lpgIG~~ia~kI~Eil 274 (464)
+.+++.+|||||+.+|+-|.-|.
T Consensus 102 ~~~~L~~LpGVG~yTAdav~~F~ 124 (161)
T 4e9f_A 102 QWKYPIELHGIGKYGNDSYRIFC 124 (161)
T ss_dssp CCSSGGGSTTCCHHHHHHHHHHT
T ss_pred ChhhhhcCCCchHHHHHHHHHHH
Confidence 46889999999999999987554
No 186
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=64.24 E-value=2.8 Score=47.93 Aligned_cols=44 Identities=16% Similarity=0.129 Sum_probs=33.1
Q ss_pred HHHHhhhccCcCHHHHHHHHH---c---CCCCHHHHhhccCcchHHHhhHhhHHhh
Q 012388 293 TISLFGEVWGIGPATAQKLYE---K---GHRTLDDLKNEDSLTHSQRLGLKYFDDI 342 (464)
Q Consensus 293 ~l~lf~~I~GvGpktA~~ly~---~---GirtledL~~~~~L~~~q~~Glk~~ed~ 342 (464)
...+|+.|+||||++|+.+.+ + .+.|.+||.+- .++|-+.|+..
T Consensus 715 s~~lL~~v~GlGp~kA~~Iv~~r~~~~G~f~sr~~L~~v------~~iG~k~fe~~ 764 (1030)
T 3psf_A 715 YASALKYISGFGKRKAIDFLQSLQRLNEPLLARQQLITH------NILHKTIFMNS 764 (1030)
T ss_dssp HHTTGGGSTTCCHHHHHHHHHHHHHTCSCCCCTTHHHHT------TSSCHHHHHHH
T ss_pred CHHHHhhCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHhc------CCccHHHHHhc
Confidence 577888999999999999952 2 67999999863 45565555544
No 187
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=63.73 E-value=3.5 Score=41.76 Aligned_cols=32 Identities=25% Similarity=0.605 Sum_probs=25.5
Q ss_pred HHHHhhh------ccCcCHHHHHHHHHcCCCCHHHHhhc
Q 012388 293 TISLFGE------VWGIGPATAQKLYEKGHRTLDDLKNE 325 (464)
Q Consensus 293 ~l~lf~~------I~GvGpktA~~ly~~GirtledL~~~ 325 (464)
-+.+|++ |+|||||||.+|.++ +.|++.+.+.
T Consensus 224 d~~~L~G~D~~d~IpGIG~KtA~kLl~~-~gsle~i~~~ 261 (379)
T 1ul1_X 224 DLCILLGSDYCESIRGIGPKRAVDLIQK-HKSIEEIVRR 261 (379)
T ss_dssp HHHHHHHCSSSCCCTTCCHHHHHHHHHH-SSSHHHHHTT
T ss_pred HHHHHhCCCcCCCCCCcCHHHHHHHHHH-cCCHHHHHHH
Confidence 3555666 999999999999997 2489998754
No 188
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=63.55 E-value=3.4 Score=38.59 Aligned_cols=32 Identities=19% Similarity=0.444 Sum_probs=23.5
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHH
Q 012388 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHF 285 (464)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l 285 (464)
+++..|||||++.|.++.-.|-.-.-..++.|
T Consensus 26 ~~l~~LPGIG~KsA~RlA~hLL~~~~~~~~~L 57 (212)
T 3vdp_A 26 EELSKLPGIGPKTAQRLAFFIINMPLDEVRSL 57 (212)
T ss_dssp HHHHTSTTCCHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHcCCHHHHHHH
Confidence 77899999999999999876654343444443
No 189
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=62.92 E-value=6.2 Score=38.55 Aligned_cols=66 Identities=20% Similarity=0.276 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHHh-cCCccc-cchhhhcC-CCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcC
Q 012388 232 RSFSYYKAIPVIE-KLPFKI-ESADQVKG-LPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIG 304 (464)
Q Consensus 232 r~~aY~rAa~~l~-~lp~~I-~s~~~l~~-lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvG 304 (464)
|+..-.++|..|. .+...+ .+.++|.. |||||..+|+.|.-+. -|.-. +- ....+..++.++.+++
T Consensus 104 KA~~L~~~A~~i~~~~~g~~p~~~~~Ll~~LpGIG~kTA~~iL~~a-~g~p~----~~--VDt~V~Rv~~Rlg~i~ 172 (287)
T 3n5n_X 104 RGRRLQEGARKVVEELGGHMPRTAETLQQLLPGVGRYTAGAIASIA-FGQAT----GV--VDGNVARVLCRVRAIG 172 (287)
T ss_dssp HHHHHHHHHHHHHHHSTTCCCSSHHHHHHHSTTCCHHHHHHHHHHH-SCCCC----CC--CCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHcCCCCHHHHHHHHHHh-cCCCC----cc--ccHHHHHHHHHhCCCC
Confidence 6666666666654 343333 24688988 9999999999997543 34321 11 2345666676666555
No 190
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=62.29 E-value=5.4 Score=37.38 Aligned_cols=22 Identities=18% Similarity=0.152 Sum_probs=18.5
Q ss_pred HHHHhhhccCcCHHHHHHHHHc
Q 012388 293 TISLFGEVWGIGPATAQKLYEK 314 (464)
Q Consensus 293 ~l~lf~~I~GvGpktA~~ly~~ 314 (464)
+++.|++++|||++||..+--.
T Consensus 111 ~~~~L~~lpGIG~~TA~~il~~ 132 (226)
T 1orn_A 111 DRDELMKLPGVGRKTANVVVSV 132 (226)
T ss_dssp CHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHCCCccHHHHHHHHHH
Confidence 5677889999999999987653
No 191
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=61.68 E-value=7 Score=39.20 Aligned_cols=66 Identities=12% Similarity=0.184 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHHhc-CCccc-cchhhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcC
Q 012388 232 RSFSYYKAIPVIEK-LPFKI-ESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIG 304 (464)
Q Consensus 232 r~~aY~rAa~~l~~-lp~~I-~s~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvG 304 (464)
|++.-.++|..|.. +...+ ...++|..|||||+.+|+.|--+. -|.-. + -....+...+.++.++.
T Consensus 94 ra~~l~~~a~~~~~~~~g~~p~~~~~L~~l~GIG~~tA~~il~~~-~~~~~----~--~vD~~v~Rv~~rl~~~~ 161 (369)
T 3fsp_A 94 RVRNLHAAVKEVKTRYGGKVPDDPDEFSRLKGVGPYTVGAVLSLA-YGVPE----P--AVDGNVMRVLSRLFLVT 161 (369)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCSHHHHHTSTTCCHHHHHHHHHHH-HCCCC----C--CCCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHcCCCChhHHHHHhcCCCcCHHHHHHHHHHH-CCCCc----c--cccHHHHHHHHHHcCcc
Confidence 66666677766643 22223 356889999999999999998765 33311 1 12234666676666654
No 192
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=61.17 E-value=6.1 Score=33.33 Aligned_cols=25 Identities=12% Similarity=0.448 Sum_probs=21.0
Q ss_pred HHHHhhhccCcCHHHHHHHHHc-CCC
Q 012388 293 TISLFGEVWGIGPATAQKLYEK-GHR 317 (464)
Q Consensus 293 ~l~lf~~I~GvGpktA~~ly~~-Gir 317 (464)
+.--|+.|+|||+.+|..+.++ ||.
T Consensus 14 v~~aLt~I~GIG~~~A~~I~~~~gid 39 (114)
T 3r8n_M 14 AVIALTSIYGVGKTRSKAILAAAGIA 39 (114)
T ss_dssp HHHHGGGSTTCCHHHHHHHHHHTTCC
T ss_pred eHhhHhhhcCcCHHHHHHHHHHcCcC
Confidence 4555789999999999999986 874
No 193
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=61.08 E-value=10 Score=35.51 Aligned_cols=43 Identities=16% Similarity=0.346 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHh-cCCccc-cchhhhcCCCCCCHHHHHHHHHHH
Q 012388 232 RSFSYYKAIPVIE-KLPFKI-ESADQVKGLPGIGKSMQDHIQEIV 274 (464)
Q Consensus 232 r~~aY~rAa~~l~-~lp~~I-~s~~~l~~lpgIG~~ia~kI~Eil 274 (464)
|+..-..+|..+. .+...+ ...++|..|||||+.+|+.|.-+.
T Consensus 89 KA~~l~~~a~~i~~~~~g~~p~~~~~L~~lpGIG~~TA~~il~~a 133 (226)
T 1orn_A 89 KARNIQKLCAMLIDKYNGEVPRDRDELMKLPGVGRKTANVVVSVA 133 (226)
T ss_dssp HHHHHHHHHHHHHHHSTTSCCSCHHHHTTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCcHHHHHHHHHCCCccHHHHHHHHHHH
Confidence 5555566666664 344344 346889999999999999987553
No 194
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=61.03 E-value=4.1 Score=40.52 Aligned_cols=26 Identities=15% Similarity=0.144 Sum_probs=21.8
Q ss_pred hccCcCHHHHHHHHHcCCCCHHHHhhc
Q 012388 299 EVWGIGPATAQKLYEKGHRTLDDLKNE 325 (464)
Q Consensus 299 ~I~GvGpktA~~ly~~GirtledL~~~ 325 (464)
+|+|||||||.+|.++. .|++.+.+.
T Consensus 241 gv~GiG~ktA~kli~~~-gsle~il~~ 266 (340)
T 1b43_A 241 GIKGIGLKKALEIVRHS-KDPLAKFQK 266 (340)
T ss_dssp CSTTCCHHHHHHHHHTC-SSGGGGTGG
T ss_pred CCCCccHHHHHHHHHHc-CCHHHHHcC
Confidence 79999999999999973 588887654
No 195
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=60.92 E-value=8.4 Score=37.16 Aligned_cols=25 Identities=20% Similarity=0.158 Sum_probs=20.5
Q ss_pred hhHHHHHhhhccCcCHHHHHHHHHc
Q 012388 290 KVRTISLFGEVWGIGPATAQKLYEK 314 (464)
Q Consensus 290 ~~~~l~lf~~I~GvGpktA~~ly~~ 314 (464)
...+++.|++++||||+||..+--.
T Consensus 202 ~~~~~~~L~~lpGIG~~TA~~ill~ 226 (282)
T 1mpg_A 202 VEQAMKTLQTFPGIGRWTANYFALR 226 (282)
T ss_dssp HHHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcCHHHHHHHHHH
Confidence 3457888899999999999987543
No 196
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=60.65 E-value=6.2 Score=40.58 Aligned_cols=56 Identities=21% Similarity=0.363 Sum_probs=38.6
Q ss_pred hcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHcCCCCHHHHh
Q 012388 256 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEKGHRTLDDLK 323 (464)
Q Consensus 256 l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~GirtledL~ 323 (464)
+..|||||+..|+.+-| .-|+++++-.. ....| ..-|||.|.|+++ .|++||+...
T Consensus 470 LtAIaGIGp~tAeRLLE--kFGSVe~Vm~A-------teDEL-RedGIGekqarrI--~gl~~l~~~~ 525 (685)
T 4gfj_A 470 LISIRGIDRERAERLLK--KYGGYSKVREA-------GVEEL-REDGLTDAQIREL--KGLKTLESIV 525 (685)
T ss_dssp HHTSTTCCHHHHHHHHH--HHTSHHHHHHS-------CHHHH-HHTTCCHHHHHHH--HTCHHHHHHS
T ss_pred eeccCCCCHHHHHHHHH--HhcCHHHHHhC-------CHHHH-HHccccHHHHHHH--hhHHHHHHHh
Confidence 56788888888887765 45676666431 12223 3489999999988 4778777554
No 197
>1kny_A Kntase, kanamycin nucleotidyltransferase; antibiotic resistance, plasmid; HET: APC KAN; 2.50A {Staphylococcus aureus} SCOP: a.24.16.1 d.218.1.1 PDB: 1kan_A
Probab=60.64 E-value=8.1 Score=36.61 Aligned_cols=51 Identities=16% Similarity=0.229 Sum_probs=33.5
Q ss_pred CCHHHHHH-HHHHHHHHhhhcCCCE-EEEEcccccccCCc-CCCccEEEeCCCc
Q 012388 346 IPRHEVEQ-MERLLQKAGEEVLPEV-IILCGGSYRRGKAS-CGDLDVVIMHPDR 396 (464)
Q Consensus 346 i~r~Ea~~-i~~iv~~~~~~~~p~~-~v~~~GsyRRgke~-~gDvDiLit~~d~ 396 (464)
+.++++.+ +..++..+....-..+ .+.+-|||-||..+ -.||||+|...+.
T Consensus 7 m~~~~~~~~~~~~~~~l~~~~~~~~~~~~lfGS~arg~~~~~SDiD~~v~~~~~ 60 (253)
T 1kny_A 7 MTREERMKIVHEIKERILDKYGDDVKAIGVYGSLGRQTDGPYSDIEMMCVMSTE 60 (253)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHGGGEEEEEEEHHHHHTCCCTTCCEEEEEEESST
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCeeEEEEEccccCCCCCCCCCeeEEEEecCc
Confidence 45566555 4555555543332235 68899999999875 4799999965443
No 198
>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransfera superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} SCOP: a.160.1.3 d.218.1.7 d.58.16.2 PDB: 1r8a_A 1r8b_A* 1r8c_A* 1sz1_A* 1tfw_A* 1tfy_A* 1uet_A 1ueu_A* 1uev_A* 2dr5_A 2dr7_A 2dr8_A* 2dr9_A 2dra_A* 2drb_A 2dvi_A* 2zh1_A 2zh2_A 2zh3_A 2zh4_A ...
Probab=60.04 E-value=9 Score=39.64 Aligned_cols=30 Identities=30% Similarity=0.388 Sum_probs=24.6
Q ss_pred EEEEEcccccccCCcC--CCccEEEeCCCcch
Q 012388 369 VIILCGGSYRRGKASC--GDLDVVIMHPDRKS 398 (464)
Q Consensus 369 ~~v~~~GsyRRgke~~--gDvDiLit~~d~~~ 398 (464)
+.+.++|||.||--.- +||||.|.-+...+
T Consensus 40 ~~v~~~GS~AkgT~Lrg~sDIDIfv~f~~~~~ 71 (437)
T 1r89_A 40 VEYVFVGSYARNTWLKGSLEIDVFLLFPEEFS 71 (437)
T ss_dssp CCEEEEHHHHHTCCCTTCCEEEEEEEECTTSC
T ss_pred CeEEEeccccCCCcCCCCCCceEEEEcCCCCC
Confidence 6888999999998887 48999988776544
No 199
>4dez_A POL IV 1, DNA polymerase IV 1; Y-family, transferase; HET: DNA; 2.60A {Mycobacterium smegmatis}
Probab=59.36 E-value=12 Score=37.08 Aligned_cols=53 Identities=17% Similarity=0.293 Sum_probs=40.3
Q ss_pred hcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHc--CCCC
Q 012388 256 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK--GHRT 318 (464)
Q Consensus 256 l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~--Girt 318 (464)
+..|||||+++++++..+ -+..+.+|.+-.+....+.| |+++...||+. |+..
T Consensus 180 v~~l~GiG~~~~~~L~~~----GI~Ti~dL~~~~~~~L~~~f------G~~~g~~l~~~a~G~d~ 234 (356)
T 4dez_A 180 PDALWGVGPKTTKKLAAM----GITTVADLAVTDPSVLTTAF------GPSTGLWLLLLAKGGGD 234 (356)
T ss_dssp GGGSTTCCHHHHHHHHHT----TCCSHHHHHTSCHHHHHHHH------CHHHHHHHHHHHTTCCC
T ss_pred HHHHcCCchhHHHHHHHc----CCCeecccccCCHHHHHHHh------CChHHHHHHHHHcCCCc
Confidence 578999999999887654 45667777766666677777 88888888875 8753
No 200
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=59.23 E-value=11 Score=30.25 Aligned_cols=23 Identities=13% Similarity=0.361 Sum_probs=21.0
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHh
Q 012388 254 DQVKGLPGIGKSMQDHIQEIVTT 276 (464)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~t 276 (464)
+++.+++|+|++..+.|.+.|+.
T Consensus 44 ~dLlki~n~G~KSl~EI~~~L~~ 66 (86)
T 3k4g_A 44 VELLXTPNLGXXSLTEIXDVLAS 66 (86)
T ss_dssp HHHHTSTTCCHHHHHHHHHHHHT
T ss_pred HHHhhccccCcccHHHHHHHHHH
Confidence 67999999999999999999864
No 201
>4ebj_A Aminoglycoside nucleotidyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 1.60A {Pseudomonas aeruginosa} PDB: 4ebk_A*
Probab=59.12 E-value=10 Score=36.45 Aligned_cols=73 Identities=22% Similarity=0.349 Sum_probs=42.5
Q ss_pred CHHHHHH-HHHHHHHHhhhcCCCE-EEEEcccccccCCc-CCCccEEEeCCCcc--hhhhHHHHHHHHHHhcccccccc
Q 012388 347 PRHEVEQ-MERLLQKAGEEVLPEV-IILCGGSYRRGKAS-CGDLDVVIMHPDRK--SHKGFLSKYVKKLKEMKFLREDL 420 (464)
Q Consensus 347 ~r~Ea~~-i~~iv~~~~~~~~p~~-~v~~~GsyRRgke~-~gDvDiLit~~d~~--~~~~~l~~lv~~L~~~g~l~~~L 420 (464)
.++++.. +.++++.+... .+++ .+.+-|||-||..+ -.||||+|...+.. ...+++.++.++|-..++....|
T Consensus 18 ~~q~Vq~eL~~ive~L~~~-~~~i~~I~LFGS~ARG~~~~~SDIDilVv~~~~~~~~~~~l~~~l~drLL~ISv~ve~l 95 (272)
T 4ebj_A 18 YFQGVQHTIARWVDRLREE-YADAVAILLKGSYARGDAATWSDIDFDVLVSTQDVEDYRTWIEPVGDRLVHISAAVEWV 95 (272)
T ss_dssp HHHHHHHHHHHHHHHHHHH-CTTEEEEEEEHHHHHTCCCTTCCEEEEEEESSTTCEEEEEEEEEETTEEEEEEEEEEEH
T ss_pred ChHHHHHHHHHHHHHHHHh-cCCceEEEEEeceeCCCCCCCCceEEEEEecCCCHHHHHHHHHHHHHHHHHhccccccc
Confidence 3444443 56666665543 4455 78899999999865 58999999754432 22233333344444444444433
No 202
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=58.20 E-value=5.5 Score=35.08 Aligned_cols=25 Identities=12% Similarity=0.214 Sum_probs=20.3
Q ss_pred HHHHhhhccCcCHHHHHHHHHc-CCC
Q 012388 293 TISLFGEVWGIGPATAQKLYEK-GHR 317 (464)
Q Consensus 293 ~l~lf~~I~GvGpktA~~ly~~-Gir 317 (464)
+.--|+.|+|||.++|..+.++ ||.
T Consensus 28 v~~ALt~I~GIG~~~A~~I~~~~gid 53 (146)
T 3u5c_S 28 IVYALTTIKGVGRRYSNLVCKKADVD 53 (146)
T ss_dssp TTTTGGGSTTCCHHHHHHHHHHHTCC
T ss_pred hHhhHhhhcCCCHHHHHHHHHHcCCC
Confidence 3344689999999999999876 774
No 203
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=58.07 E-value=4.1 Score=47.38 Aligned_cols=45 Identities=16% Similarity=0.090 Sum_probs=34.1
Q ss_pred HHHHhhhccCcCHHHHHHHH--H-c---CCCCHHHHhhccCcchHHHhhHhhHHhhc
Q 012388 293 TISLFGEVWGIGPATAQKLY--E-K---GHRTLDDLKNEDSLTHSQRLGLKYFDDIK 343 (464)
Q Consensus 293 ~l~lf~~I~GvGpktA~~ly--~-~---GirtledL~~~~~L~~~q~~Glk~~ed~~ 343 (464)
.-.+|+.|.||||++|+.+. . + .+.|.+||.+- .++|-+.|+...
T Consensus 712 s~~lL~~v~GlGp~kA~~Iv~~r~~~~G~f~sr~~L~~v------~~iG~k~fe~~a 762 (1219)
T 3psi_A 712 YASALKYISGFGKRKAIDFLQSLQRLNEPLLARQQLITH------NILHKTIFMNSA 762 (1219)
T ss_dssp HHTTGGGSTTCCHHHHHHHHHHHHHHCSCCCCTTHHHHT------TCSCHHHHHHHG
T ss_pred CHHHHHhCCCCCHHHHHHHHHHHHHhCCCCCCHHHHhhC------CCccHHHHHhcc
Confidence 57788999999999999994 2 2 67899998863 456666666554
No 204
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=57.97 E-value=3.8 Score=40.92 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=17.3
Q ss_pred hccCcCHHHHHHHHHcCCCCHHHHhhc
Q 012388 299 EVWGIGPATAQKLYEKGHRTLDDLKNE 325 (464)
Q Consensus 299 ~I~GvGpktA~~ly~~GirtledL~~~ 325 (464)
+|+|||+|||.+|.++- .|++.+.+.
T Consensus 238 Gv~GIG~KtA~kLi~~~-gsle~i~~~ 263 (346)
T 2izo_A 238 GIRGIGPERALKIIKKY-GKIEKAMEY 263 (346)
T ss_dssp CSTTCCHHHHHHHHHHS-SCC------
T ss_pred CCCCcCHHHHHHHHHHc-CCHHHHHHH
Confidence 79999999999999972 477777643
No 205
>1px5_A 2'-5'-oligoadenylate synthetase 1; 5-stranded antiparalel beta sheet, four helix bundle, transferase; HET: YCM; 1.74A {Sus scrofa} SCOP: a.160.1.2 d.218.1.6
Probab=57.95 E-value=11 Score=37.42 Aligned_cols=26 Identities=31% Similarity=0.534 Sum_probs=14.6
Q ss_pred EEEEcccccccCCcCC--CccEEEeCCC
Q 012388 370 IILCGGSYRRGKASCG--DLDVVIMHPD 395 (464)
Q Consensus 370 ~v~~~GsyRRgke~~g--DvDiLit~~d 395 (464)
++...|||.||-..-| ||||+|--+.
T Consensus 56 ~v~~~GSyargT~lrg~sDiDlvV~l~~ 83 (349)
T 1px5_A 56 KVVKGGSSGKGTTLRGRSDADLVVFLTK 83 (349)
T ss_dssp EEEEEEEC--------CEEEEEEEEEES
T ss_pred EEEEecCcCCCcccCCCCceeEEEEECC
Confidence 6778999999988865 9999996543
No 206
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=57.80 E-value=3.2 Score=42.17 Aligned_cols=46 Identities=13% Similarity=0.093 Sum_probs=32.9
Q ss_pred hhhccCcCHHHHHHHHHc----CCCCHHHHhhcc------CcchHHHhhHhhHHhh
Q 012388 297 FGEVWGIGPATAQKLYEK----GHRTLDDLKNED------SLTHSQRLGLKYFDDI 342 (464)
Q Consensus 297 f~~I~GvGpktA~~ly~~----GirtledL~~~~------~L~~~q~~Glk~~ed~ 342 (464)
+++|||||+++|+++.+- -+..+++|+.+. .|..+.++|.+....|
T Consensus 82 l~~lpGIG~~ia~kI~E~l~tG~~~~le~l~~d~~~~~l~~l~~I~GvGpk~a~~l 137 (381)
T 1jms_A 82 TEGIPCLGDKVKSIIEGIIEDGESSEAKAVLNDERYKSFKLFTSVFGVGLKTAEKW 137 (381)
T ss_dssp GTTCSSCCHHHHHHHHHHHHHSSCHHHHHHHHCHHHHHHHHHHTSTTCCHHHHHHH
T ss_pred HhcCCCCcHHHHHHHHHHHHcCCcHHHHHHhcCcchhHHHHHHccCCCCHHHHHHH
Confidence 679999999999998863 457788887631 2555666666655554
No 207
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=57.79 E-value=3.4 Score=41.92 Aligned_cols=17 Identities=29% Similarity=0.349 Sum_probs=8.7
Q ss_pred HhhhccCcCHHHHHHHH
Q 012388 296 LFGEVWGIGPATAQKLY 312 (464)
Q Consensus 296 lf~~I~GvGpktA~~ly 312 (464)
.|++|.|||+++|+.++
T Consensus 348 EL~~VeGIGe~rAr~Ir 364 (377)
T 3c1y_A 348 DLKKVEGIGEKRARAIS 364 (377)
T ss_dssp HHTTSTTCCHHHHHHHH
T ss_pred HHHhccCccHHHHHHHH
Confidence 34455555555555544
No 208
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=56.98 E-value=3.6 Score=45.73 Aligned_cols=27 Identities=37% Similarity=0.497 Sum_probs=24.7
Q ss_pred hhhccCcCHHHHHHHHHcCCCCHHHHh
Q 012388 297 FGEVWGIGPATAQKLYEKGHRTLDDLK 323 (464)
Q Consensus 297 f~~I~GvGpktA~~ly~~GirtledL~ 323 (464)
++.++|||||+|+.|-+.||.|+.||.
T Consensus 117 ~~~l~gvg~~~~~~l~~lgi~~~~dll 143 (780)
T 1gm5_A 117 IQYAKGVGPNRKKKLKKLGIETLRDLL 143 (780)
T ss_dssp SSSSSSCCHHHHHHHHTTTCCSSGGGT
T ss_pred chhcCCCCHHHHHHHHHCCCCcHHHHH
Confidence 457899999999999888999999998
No 209
>3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex, Y-family DNA polym translesion synthesis, nucleoside triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens} PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A* 3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 4ebc_A* 4ebd_A* ...
Probab=56.73 E-value=11 Score=38.55 Aligned_cols=53 Identities=19% Similarity=0.380 Sum_probs=39.1
Q ss_pred hcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHc--CCCC
Q 012388 256 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK--GHRT 318 (464)
Q Consensus 256 l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~--Girt 318 (464)
+..|||||+++++++..+ | +..+.+|.+-.+....+.| |.+.+..||+. |+..
T Consensus 236 v~~l~GIG~~t~~~L~~l---G-I~TigdLa~~~~~~L~~~f------G~~~g~~L~~~a~G~d~ 290 (420)
T 3osn_A 236 IKEIPGIGYKTAKCLEAL---G-INSVRDLQTFSPKILEKEL------GISVAQRIQKLSFGEDN 290 (420)
T ss_dssp GGGSTTCCHHHHHHHHHT---T-CCSHHHHHHSCHHHHHHHH------HHHHHHHHHHHHTTCCC
T ss_pred HHHccCCCHHHHHHHHHh---C-CCcHHHHhhCCHHHHHHHh------CchHHHHHHHHhcCCCc
Confidence 678999999999988764 3 5566666665555566667 67788999984 8864
No 210
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=56.69 E-value=11 Score=29.60 Aligned_cols=23 Identities=4% Similarity=0.297 Sum_probs=20.6
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHh
Q 012388 254 DQVKGLPGIGKSMQDHIQEIVTT 276 (464)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~t 276 (464)
+++.+++|+|++..+.|.+.|+.
T Consensus 48 ~dLlki~n~G~kSl~EI~~~L~e 70 (79)
T 3gfk_B 48 EDMMKVRNLGRKSLEEVKAKLEE 70 (79)
T ss_dssp HHHTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHhHHHHHHHHHHH
Confidence 67999999999999999998864
No 211
>3mfi_A DNA polymerase ETA; DNA damage, DNA repair, DNA replication, DNA synthesis, NUCL binding, magnesium; HET: DNA DOC TTD DTP; 1.76A {Saccharomyces cerevisiae} PDB: 3mfh_A* 3oha_A* 3ohb_A* 2r8j_A* 2r8k_A* 2wtf_A* 2xgp_A* 2xgq_A* 1jih_A*
Probab=56.05 E-value=3.1 Score=44.02 Aligned_cols=27 Identities=11% Similarity=0.453 Sum_probs=22.7
Q ss_pred hhhccCcCHHHHHHHHHc-CC---CCHHHHh
Q 012388 297 FGEVWGIGPATAQKLYEK-GH---RTLDDLK 323 (464)
Q Consensus 297 f~~I~GvGpktA~~ly~~-Gi---rtledL~ 323 (464)
+..+||||++++++|.+. || +|+.+|.
T Consensus 309 V~~l~GIG~~t~~~L~~llGI~~~~ti~~i~ 339 (520)
T 3mfi_A 309 ITSFWTLGGVLGKELIDVLDLPHENSIKHIR 339 (520)
T ss_dssp GGGSTTCSSHHHHHHHHHTTCCSSSHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHhcCCCcccchhhhh
Confidence 357999999999999999 99 7875544
No 212
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=55.84 E-value=11 Score=34.79 Aligned_cols=57 Identities=12% Similarity=0.261 Sum_probs=35.9
Q ss_pred HHHHHHHHHcCCC-hhHHHHHHHHHHHh-cCCccc-cchhhhcCCCCCCHHHHHHHHHHH
Q 012388 218 GKLINIYRALGED-RRSFSYYKAIPVIE-KLPFKI-ESADQVKGLPGIGKSMQDHIQEIV 274 (464)
Q Consensus 218 ~~la~~~e~~g~~-~r~~aY~rAa~~l~-~lp~~I-~s~~~l~~lpgIG~~ia~kI~Eil 274 (464)
++|.+++.-.|=- .|+..-..+|..+. .+...+ ...++|..|||||+.+|+.|--+.
T Consensus 70 ~~l~~~i~~~G~~~~KA~~l~~~a~~~~~~~~g~~~~~~~~L~~l~GIG~~tA~~il~~~ 129 (211)
T 2abk_A 70 EGVKTYIKTIGLYNSKAENIIKTCRILLEQHNGEVPEDRAALEALPGVGRKTANVVLNTA 129 (211)
T ss_dssp HHHHHHHTTSTTHHHHHHHHHHHHHHHHHHTTTSCCSCHHHHHHSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCchHHHHHHHhCCCCChHHHHHHHHHH
Confidence 4444444323321 26666667776664 343333 345889999999999999986554
No 213
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=55.83 E-value=5.1 Score=36.97 Aligned_cols=22 Identities=18% Similarity=0.369 Sum_probs=18.4
Q ss_pred chhhhcCCCCCCHHHHHHHHHH
Q 012388 252 SADQVKGLPGIGKSMQDHIQEI 273 (464)
Q Consensus 252 s~~~l~~lpgIG~~ia~kI~Ei 273 (464)
..++|.+|||||+.+|+.|--+
T Consensus 115 ~~~~L~~lpGIG~kTA~~il~~ 136 (207)
T 3fhg_A 115 ARERLLNIKGIGMQEASHFLRN 136 (207)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHHHcCCCcCHHHHHHHHHH
Confidence 4578999999999999998543
No 214
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=54.53 E-value=5.8 Score=38.51 Aligned_cols=29 Identities=31% Similarity=0.526 Sum_probs=25.6
Q ss_pred hhhccCcCHHHHHHHHHcCCCCHHHHhhc
Q 012388 297 FGEVWGIGPATAQKLYEKGHRTLDDLKNE 325 (464)
Q Consensus 297 f~~I~GvGpktA~~ly~~GirtledL~~~ 325 (464)
+.+++||++.++++|-+.||.|++||...
T Consensus 5 ~~~l~gi~~~~~~kL~~~gi~t~~~~~~~ 33 (322)
T 2i1q_A 5 LTDLPGVGPSTAEKLVEAGYIDFMKIATA 33 (322)
T ss_dssp CTTSTTCCHHHHHHHHHHTCCSHHHHHTC
T ss_pred HhhcCCCCHHHHHHHHHcCCCcHHHHHhC
Confidence 34788999999999999999999999854
No 215
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=54.36 E-value=4.7 Score=31.22 Aligned_cols=44 Identities=20% Similarity=0.390 Sum_probs=33.7
Q ss_pred cCcCHHHHHHHHHcCCCCHHHHhhc--cCcchHHHhhHhhHHhhcc
Q 012388 301 WGIGPATAQKLYEKGHRTLDDLKNE--DSLTHSQRLGLKYFDDIKT 344 (464)
Q Consensus 301 ~GvGpktA~~ly~~GirtledL~~~--~~L~~~q~~Glk~~ed~~~ 344 (464)
-++.+....-|-+.||.|+.||... ..|-++..||.+..+++.+
T Consensus 14 L~LS~Ra~NcLkragI~Tv~dL~~~s~~dLlki~n~G~kSl~EI~~ 59 (73)
T 1z3e_B 14 LDLSVRSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVKA 59 (73)
T ss_dssp SCCBHHHHHHHHHTTCCBHHHHHTSCHHHHHTSTTCCHHHHHHHHH
T ss_pred hCCCHHHHHHHHHcCCCcHHHHHcCCHHHHHHcCCCCHHHHHHHHH
Confidence 3677888888888899999999854 3477778888888766653
No 216
>3jz0_A Lincosamide nucleotidyltransferase; alpha-beta structure, transferase-antibiotic CO; HET: APC CLY; 2.00A {Enterococcus faecium} PDB: 3jyy_A*
Probab=54.13 E-value=32 Score=33.42 Aligned_cols=92 Identities=13% Similarity=0.178 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHhhhcCCCEE-EEEcccccccCCc-CCCccEEEeCCCcchhhhHHHHHHHHHHhcccccccccccccCCC
Q 012388 351 VEQMERLLQKAGEEVLPEVI-ILCGGSYRRGKAS-CGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE 428 (464)
Q Consensus 351 a~~i~~iv~~~~~~~~p~~~-v~~~GsyRRgke~-~gDvDiLit~~d~~~~~~~l~~lv~~L~~~g~l~~~L~~~~~~~~ 428 (464)
-+-+..|++.+.. ++.+. |.+.||+-||... =.|+||+|.-.+... ..+.. -..|..-|=+.-. + .+
T Consensus 25 ~e~l~~I~~~~~~--d~~i~av~l~GS~~~~~~D~~SD~Di~~vV~~~~~-~~f~~--~~Wl~~fG~~~~~--f--~~-- 93 (287)
T 3jz0_A 25 KELIANVKNLTES--DERITACMMYGSFTKGEGDQYSDIEFYIFLKHSIT-SNFDS--SNWLFDVAPYLML--Y--KN-- 93 (287)
T ss_dssp HHHHHHHHHHHHH--CTTEEEEEECSGGGTTCCCTTCCEEEEEEECGGGT-TTCCH--HHHHHHHCCEEEE--E--EC--
T ss_pred HHHHHHHHHHHhc--CCCEEEEEEECCccCCCCCCccceeEEEEEcCcch-hhhhh--HHHHHHhhhhheE--e--ec--
Confidence 3334444444432 78884 7789999988544 379999997655321 11211 1344443422211 1 11
Q ss_pred CCCCCCceEEEEeecCCCCcceeeeEEEecCccc
Q 012388 429 GTDSGVDTYFGLCTYPGRELRHRIDFKVLASLSL 462 (464)
Q Consensus 429 ~~~~~~~~~~g~~~~p~~~~~rRiDi~~~P~~~~ 462 (464)
.. . |. ++.+... .|||+.++|.+.+
T Consensus 94 --~~--~-~~-l~lF~Dg---~riDl~l~~~~~l 118 (287)
T 3jz0_A 94 --EY--G-TE-VVIFDNL---IRGEFHFLSEKDM 118 (287)
T ss_dssp --TT--S-CE-EEEETTS---CEEEEEEEEGGGG
T ss_pred --cc--c-eE-EEEecCC---cEEEEEEeeHHHH
Confidence 01 1 11 5666543 3999999998865
No 217
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=54.02 E-value=6.7 Score=34.76 Aligned_cols=26 Identities=12% Similarity=0.219 Sum_probs=21.2
Q ss_pred HHHHHhhhccCcCHHHHHHHHHc-CCC
Q 012388 292 RTISLFGEVWGIGPATAQKLYEK-GHR 317 (464)
Q Consensus 292 ~~l~lf~~I~GvGpktA~~ly~~-Gir 317 (464)
.+.--|+.|+|||..+|..+.++ ||.
T Consensus 25 ~v~~ALt~I~GIG~~~A~~I~~~~gid 51 (152)
T 3iz6_M 25 KIMFALTSIKGVGRRFSNIVCKKADID 51 (152)
T ss_dssp BHHHHHTTSTTCCHHHHHHHHHHHTCC
T ss_pred EeHhhhhhccCcCHHHHHHHHHHcCCC
Confidence 35555789999999999999876 774
No 218
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=53.53 E-value=5.9 Score=37.34 Aligned_cols=131 Identities=15% Similarity=0.107 Sum_probs=69.2
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHH---HH-----Hc----CCCCHHH
Q 012388 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQK---LY-----EK----GHRTLDD 321 (464)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~---ly-----~~----Girtled 321 (464)
+++..|||||++.|.++.-.|-.-.-..++.|.+.. ..+.+-...+.=.|--+-.. +- +. =+.+..|
T Consensus 12 ~~l~~LPGIG~KSA~RlA~hLL~~~~~~~~~La~al-~~~~~~i~~C~~C~nlte~~~C~IC~d~~Rd~~~iCVVE~~~D 90 (228)
T 1vdd_A 12 RELSRLPGIGPKSAQRLAFHLFEQPREDIERLASAL-LEAKRDLHVCPICFNITDAEKCDVCADPSRDQRTICVVEEPGD 90 (228)
T ss_dssp HHHHTSTTCCHHHHHHHHHHHSSSCHHHHHHHHHHH-HHHHHHCEECSSSCCEESSSSCHHHHCSSSCTTEEEEESSHHH
T ss_pred HHHhHCCCCCHHHHHHHHHHHHcCCHHHHHHHHHHH-HHHHhcCeEcCCCCCCcCCCcCCCCCCCCcCCCeEEEECCHHH
Confidence 779999999999999998766544434444432210 01111111111111000000 00 00 1133344
Q ss_pred Hhh--------------ccCcchHHHhhHh--hHHhhccCC-----------CHHHHHHHHHHHHHHhhhcCCCEEEEEc
Q 012388 322 LKN--------------EDSLTHSQRLGLK--YFDDIKTRI-----------PRHEVEQMERLLQKAGEEVLPEVIILCG 374 (464)
Q Consensus 322 L~~--------------~~~L~~~q~~Glk--~~ed~~~~i-----------~r~Ea~~i~~iv~~~~~~~~p~~~v~~~ 374 (464)
+.. .+.|+.+.++|.. ..+.+.+|+ |--|-+....+|.+.... -+++|+=
T Consensus 91 v~aiE~t~~y~G~YhVLgG~lSPldGigP~dL~i~~L~~Rl~~V~EVIlAtnpTvEGEaTA~YI~~~Lk~--~~vkVTR- 167 (228)
T 1vdd_A 91 VIALERSGEYRGLYHVLHGVLSPMNGVGPDKLHIKPLLPRVGQGMEVILATGTTVEGDATALYLQRLLEP--LGAAISR- 167 (228)
T ss_dssp HHHTTTTSSCCSEEEECSSCCBGGGTBCTTTSTTGGGGGGCCTTCEEEECCCSSHHHHHHHHHHHHHHTT--SSCEEEE-
T ss_pred HHHHHHhcccceEEEecCCccCcccCCChhhcCHHHHHHHhCCCCEEEEeCCCCchHHHHHHHHHHHHHH--cCCCEEE-
Confidence 431 1356777888754 345566666 334556666667766532 2667763
Q ss_pred ccccccCCcCCCccEE
Q 012388 375 GSYRRGKASCGDLDVV 390 (464)
Q Consensus 375 GsyRRgke~~gDvDiL 390 (464)
.-+|-+.+||+|++
T Consensus 168 --iA~GiPvGgeLEY~ 181 (228)
T 1vdd_A 168 --IAYGVPVGGSLEYT 181 (228)
T ss_dssp --CCBCBCTTCCGGGS
T ss_pred --ecccCCCCcceeec
Confidence 45799999999985
No 219
>3j20_O 30S ribosomal protein S13P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=53.43 E-value=6.9 Score=34.51 Aligned_cols=25 Identities=20% Similarity=0.133 Sum_probs=20.8
Q ss_pred HHHHhhhccCcCHHHHHHHHHc-CCC
Q 012388 293 TISLFGEVWGIGPATAQKLYEK-GHR 317 (464)
Q Consensus 293 ~l~lf~~I~GvGpktA~~ly~~-Gir 317 (464)
+.--|+.|+|||..+|..+.+. ||.
T Consensus 21 v~~aLt~I~GIG~~~A~~I~~~~gid 46 (148)
T 3j20_O 21 LRWALTAIKGIGINFATMVCRVAGLD 46 (148)
T ss_dssp HHHHHHHSTTCCHHHHHHHHHHHTCC
T ss_pred ehhhhhhccCcCHHHHHHHHHHhCCC
Confidence 4455689999999999999876 774
No 220
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=51.92 E-value=5.7 Score=31.29 Aligned_cols=44 Identities=20% Similarity=0.390 Sum_probs=34.6
Q ss_pred cCcCHHHHHHHHHcCCCCHHHHhhc--cCcchHHHhhHhhHHhhcc
Q 012388 301 WGIGPATAQKLYEKGHRTLDDLKNE--DSLTHSQRLGLKYFDDIKT 344 (464)
Q Consensus 301 ~GvGpktA~~ly~~GirtledL~~~--~~L~~~q~~Glk~~ed~~~ 344 (464)
-++.+....-|-+.||.|+.||... ..|-.+..||-+..++|.+
T Consensus 21 L~LS~Ra~NcLk~agI~Tv~dL~~~se~dLlki~n~G~kSl~EI~~ 66 (79)
T 3gfk_B 21 LDLSVRSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVKA 66 (79)
T ss_dssp SCCBHHHHHHHHHTTCCBHHHHTTCCHHHHTTSTTCHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHhCCCCHHHHHhCCHHHHHHcCCCCHhHHHHHHH
Confidence 3677888888888899999999864 3577788899888776653
No 221
>3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA repair, DNA synthesis, binding, magnesium, metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens}
Probab=51.89 E-value=17 Score=38.24 Aligned_cols=53 Identities=28% Similarity=0.502 Sum_probs=40.8
Q ss_pred hcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHc--CCCC
Q 012388 256 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK--GHRT 318 (464)
Q Consensus 256 l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~--Girt 318 (464)
+..|||||+.+++++..+ -+..+.+|.+-.+..+.+.| |++++..||+. |+..
T Consensus 317 V~~l~GIG~~t~~kL~~l----GI~TigDLa~~~~~~L~~~f------G~~~g~~L~~~a~GiD~ 371 (504)
T 3gqc_A 317 VTNLPGVGHSMESKLASL----GIKTCGDLQYMTMAKLQKEF------GPKTGQMLYRFCRGLDD 371 (504)
T ss_dssp GGGSTTCCHHHHHHHHHT----TCCBHHHHTTSCHHHHHHHH------CHHHHHHHHHHTTTCCC
T ss_pred hhHhhCcCHHHHHHHHHc----CCCcHHHHHhccHHHHHHhh------ChhHHHHHHHHhcCCCc
Confidence 678999999999988764 45667777766666666777 88889999974 8853
No 222
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=51.75 E-value=16 Score=35.44 Aligned_cols=46 Identities=17% Similarity=0.229 Sum_probs=32.3
Q ss_pred CCChhHHHHHHHHHHHhcCCcccc---------chhhhcCCCCCCHHHHHHHHHH
Q 012388 228 GEDRRSFSYYKAIPVIEKLPFKIE---------SADQVKGLPGIGKSMQDHIQEI 273 (464)
Q Consensus 228 g~~~r~~aY~rAa~~l~~lp~~I~---------s~~~l~~lpgIG~~ia~kI~Ei 273 (464)
|-.+|+..-..+|..+..-...+. ..++|..|||||+.+|+.|.-+
T Consensus 176 g~g~Ra~~I~~~A~~i~~g~~~l~~l~~~~~~~~~~~L~~lpGIG~~TA~~ill~ 230 (290)
T 3i0w_A 176 TAGFRAKYLKDTVDRIYNGELNLEYIKSLNDNECHEELKKFMGVGPQVADCIMLF 230 (290)
T ss_dssp TCGGGHHHHHHHHHHHHTTSSCHHHHHHSCHHHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHhCCCCHHHHhcCCHHHHHHHHHhCCCcCHHHHHHHHHH
Confidence 545687777777777764322211 2367999999999999998744
No 223
>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A
Probab=51.01 E-value=14 Score=36.57 Aligned_cols=53 Identities=21% Similarity=0.352 Sum_probs=38.9
Q ss_pred hcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHc--CCCC
Q 012388 256 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK--GHRT 318 (464)
Q Consensus 256 l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~--Girt 318 (464)
+..|||||++++++...+ -+..+.+|.+-.+....+.| |..++..+|+. |+..
T Consensus 181 v~~l~GiG~~~~~~L~~~----Gi~t~~dL~~~~~~~L~~~f------G~~~g~~l~~~a~G~d~ 235 (354)
T 3bq0_A 181 IDEIPGIGSVLARRLNEL----GIQKLRDILSKNYNELEKIT------GKAKALYLLKLAQNKYS 235 (354)
T ss_dssp STTSTTCCHHHHHHHTTT----TCCBGGGGGGSCHHHHHHHH------CHHHHHHHHHHHTTCCC
T ss_pred cccccCcCHHHHHHHHHc----CCccHHHHhcCCHHHHHHHH------CHHHHHHHHHHhCCCCC
Confidence 678899999888876543 46667777765666677777 78878888875 8854
No 224
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ...
Probab=50.87 E-value=16 Score=36.68 Aligned_cols=50 Identities=24% Similarity=0.216 Sum_probs=32.1
Q ss_pred HHHcCCChhHHHHHHHHHHHhc-CCcc--------c---cchhhhcCCCCCCHHHHHHHHHH
Q 012388 224 YRALGEDRRSFSYYKAIPVIEK-LPFK--------I---ESADQVKGLPGIGKSMQDHIQEI 273 (464)
Q Consensus 224 ~e~~g~~~r~~aY~rAa~~l~~-lp~~--------I---~s~~~l~~lpgIG~~ia~kI~Ei 273 (464)
+...|-.+|+..-..+|..+.. +... + +..++|..|||||+.+|+.|.-+
T Consensus 211 Lr~~Gl~~RA~~I~~~A~~i~~~~~G~~~L~~l~~~~~~~~~~~L~~LpGIGp~TA~~ill~ 272 (360)
T 2xhi_A 211 LRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYEEAHKALCILPGVGTCVADKICLM 272 (360)
T ss_dssp HHHTTCTTHHHHHHHHHHHHHHTTCTHHHHHGGGTSCHHHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHcCCcHHHHHHHHHHHHHHhccCCccCHHHHhcCCHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 3334544677666677766643 1111 1 23467999999999999988654
No 225
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M
Probab=50.79 E-value=8.1 Score=34.34 Aligned_cols=25 Identities=20% Similarity=0.120 Sum_probs=20.9
Q ss_pred HHHHhhhccCcCHHHHHHHHHc-CCC
Q 012388 293 TISLFGEVWGIGPATAQKLYEK-GHR 317 (464)
Q Consensus 293 ~l~lf~~I~GvGpktA~~ly~~-Gir 317 (464)
+.--|+.|+|||..+|..+.+. ||.
T Consensus 28 v~~aLt~I~GIG~~~A~~I~~~~gid 53 (155)
T 2xzm_M 28 TPIALTGIRGIGRRFAYIICKVLKID 53 (155)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHTTCC
T ss_pred EEEeeecccccCHHHHHHHHHHcCCC
Confidence 4556789999999999999876 774
No 226
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=50.74 E-value=6.4 Score=31.52 Aligned_cols=42 Identities=19% Similarity=0.240 Sum_probs=33.3
Q ss_pred CcCHHHHHHHHHcCCCCHHHHhhc--cCcchHHHhhHhhHHhhc
Q 012388 302 GIGPATAQKLYEKGHRTLDDLKNE--DSLTHSQRLGLKYFDDIK 343 (464)
Q Consensus 302 GvGpktA~~ly~~GirtledL~~~--~~L~~~q~~Glk~~ed~~ 343 (464)
++.++...-|-+.||.|+.||... ..|-+...||-|..++|.
T Consensus 18 ~LSvRa~NcLkragI~Tv~dL~~~se~dLlki~n~G~KSl~EI~ 61 (86)
T 3k4g_A 18 ELTVRSANCLXAEAIHYIGDLVQRTEVELLXTPNLGXXSLTEIX 61 (86)
T ss_dssp CCCHHHHHHHHHTTCCBHHHHHHSCHHHHHTSTTCCHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCCcHHHHHhCCHHHHhhccccCcccHHHHH
Confidence 677888888888899999999864 357777888888866654
No 227
>3ci0_K Pseudopilin GSPK; general secretory pathway, pseudopilus, type 4 pilin biogene methylation, protein transport; 2.20A {Escherichia coli} SCOP: a.60.16.1 a.60.16.1 d.24.1.6
Probab=50.46 E-value=3.8 Score=40.09 Aligned_cols=76 Identities=9% Similarity=0.260 Sum_probs=44.5
Q ss_pred ccccchhhhcCCCCCCHHHHHHHHHHHHhCCc--hhhHHHHhhchhHHHHHhhhc--cCcCHHHHHHHHHc----CCCCH
Q 012388 248 FKIESADQVKGLPGIGKSMQDHIQEIVTTGKL--SKLEHFEKDEKVRTISLFGEV--WGIGPATAQKLYEK----GHRTL 319 (464)
Q Consensus 248 ~~I~s~~~l~~lpgIG~~ia~kI~Eil~tG~~--~~le~l~~~~~~~~l~lf~~I--~GvGpktA~~ly~~----Girtl 319 (464)
.++.+.+||..++|+...+-.++..++.---. ..+ .+-.-.+. -..+|..+ +|+|+..|+++.+. |+.++
T Consensus 152 ~~~~~~~EL~~v~G~~~~~~~~l~p~vtv~p~~~~~i-NiNTa~~~-~a~vL~al~~~~i~~~~A~~ii~~R~~~gf~~v 229 (298)
T 3ci0_K 152 QPLADISEMRVVQGMDAGLYQKLKPLVCALPMTRQQI-NINTLDVT-QSVILEALFDPWLSPVQARALLQQRPAKGWEDV 229 (298)
T ss_dssp SCCSSGGGGGGSTTCCHHHHHHHTTTEECCSCSSCCE-ETTTCCGG-GTHHHHHHTC-------CCHHHHTCCTTCCSCH
T ss_pred CCCCCHHHHHhccCCCHHHHHhhcCeEEEecCCCcce-eccccChh-hHHHHHHhcCCCCCHHHHHHHHHhcccCCCCCH
Confidence 35788899999999999999998887754210 111 11110000 12233345 79999999999973 89999
Q ss_pred HHHhhc
Q 012388 320 DDLKNE 325 (464)
Q Consensus 320 edL~~~ 325 (464)
+|+.+.
T Consensus 230 ~~~~~~ 235 (298)
T 3ci0_K 230 DQFLAQ 235 (298)
T ss_dssp HHHHTS
T ss_pred HHHHhh
Confidence 999863
No 228
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=49.94 E-value=13 Score=34.43 Aligned_cols=43 Identities=21% Similarity=0.128 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHhc-CCc----cc-cchhhhcCCCCCCHHHHHHHHHHH
Q 012388 232 RSFSYYKAIPVIEK-LPF----KI-ESADQVKGLPGIGKSMQDHIQEIV 274 (464)
Q Consensus 232 r~~aY~rAa~~l~~-lp~----~I-~s~~~l~~lpgIG~~ia~kI~Eil 274 (464)
|+..-..+|..+.. +.. ++ ...++|.+|||||+.+|+.|--+.
T Consensus 93 KA~~L~~~a~~i~~~~~~l~~~~~~~~~~~L~~lpGIG~kTA~~il~~a 141 (218)
T 1pu6_A 93 KAKRLIDLSGNILKDFQSFENFKQEVTREWLLDQKGIGKESADAILCYA 141 (218)
T ss_dssp HHHHHHHHHHHHHHHHSSHHHHHHHCCHHHHHTSTTCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCChhhccchHHHHHHHcCCCcCHHHHHHHHHHH
Confidence 55555666655542 221 11 345779999999999999987553
No 229
>2zc2_A DNAD-like replication protein; GI 24377835, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Streptococcus mutans UA159}
Probab=49.81 E-value=8.7 Score=29.49 Aligned_cols=19 Identities=21% Similarity=0.284 Sum_probs=16.6
Q ss_pred HHHHHHHHHcCCCCHHHHh
Q 012388 305 PATAQKLYEKGHRTLDDLK 323 (464)
Q Consensus 305 pktA~~ly~~GirtledL~ 323 (464)
-+.+..|.++||+|++|++
T Consensus 59 ~~Il~~W~~~gi~T~e~a~ 77 (78)
T 2zc2_A 59 QAILRNWRHEGISTLRQVE 77 (78)
T ss_dssp HHHHHHHHHTTCCSHHHHC
T ss_pred HHHHHHHHHcCCCCHHHHh
Confidence 4668999999999999985
No 230
>2ziu_A MUS81 protein; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Danio rerio} PDB: 2ziv_A 2ziw_A
Probab=49.64 E-value=11 Score=36.65 Aligned_cols=59 Identities=22% Similarity=0.413 Sum_probs=39.5
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHH-HHhh-chhHHHHHhhhcc-C-----cCHHHHHHHHHc
Q 012388 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEH-FEKD-EKVRTISLFGEVW-G-----IGPATAQKLYEK 314 (464)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~-l~~~-~~~~~l~lf~~I~-G-----vGpktA~~ly~~ 314 (464)
.+|..||||+...|..|.+ .-++...|-. ++.- .+....+||.++. | ||+..++++|+.
T Consensus 237 ~mL~~IpGVs~~~A~~I~~--~ypTp~~L~~Ay~~~~~~~e~~~lL~~i~~g~~~r~IG~~lS~kI~~~ 303 (311)
T 2ziu_A 237 RQLMQISGVSGDKAAAVLE--HYSTVSSLLQAYDKCSSETEKEKLLSSVKYGKLKRNLGPALSRTIYQL 303 (311)
T ss_dssp HHHTTBTTCCHHHHHHHHH--HCSSHHHHHHHHHHCSSHHHHTTTTTTCEETTTTEECHHHHHHHHHHH
T ss_pred HHHHhccCCCHHHHHHHHH--HCCCHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCcCHHHHHHHHHH
Confidence 6799999999999988865 4455655433 3221 1222334566663 4 999999999974
No 231
>3hj4_A Minor editosome-associated tutase; nucleotidyltransferase, RNA UTP-binding, transferase; 1.56A {Trypanosoma brucei} PDB: 3hiy_A 3hj1_A*
Probab=49.52 E-value=23 Score=35.94 Aligned_cols=39 Identities=15% Similarity=0.110 Sum_probs=30.5
Q ss_pred HHHHhhhcCCCEEEEEcccccccCCc-CCCccEEEeCCCc
Q 012388 358 LQKAGEEVLPEVIILCGGSYRRGKAS-CGDLDVVIMHPDR 396 (464)
Q Consensus 358 v~~~~~~~~p~~~v~~~GsyRRgke~-~gDvDiLit~~d~ 396 (464)
|+.+.....|++.|.+-||+.-|.-+ .+|||+.|..++.
T Consensus 35 l~~ii~~~~p~~~v~~FGS~~tgl~lp~SDiDlvI~~~~~ 74 (384)
T 3hj4_A 35 VLDIGMLAVNKAHVELFGSHVSGFCTPHSDADISLTYRNF 74 (384)
T ss_dssp HHHHHHHHSTTCEEEEESHHHHSCCCTTCCEEEEEECTTC
T ss_pred HHHHHHHHCCCcEEEEeeeccCCCCCCCCCeeEEEecCCC
Confidence 33444456899999999999998765 5799999987654
No 232
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=49.15 E-value=15 Score=36.65 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=18.2
Q ss_pred HHHHhhhccCcCHHHHHHHHHc
Q 012388 293 TISLFGEVWGIGPATAQKLYEK 314 (464)
Q Consensus 293 ~l~lf~~I~GvGpktA~~ly~~ 314 (464)
+++.|++++|||++||..+--.
T Consensus 116 ~~~~L~~l~GIG~~tA~~il~~ 137 (369)
T 3fsp_A 116 DPDEFSRLKGVGPYTVGAVLSL 137 (369)
T ss_dssp SHHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHHhcCCCcCHHHHHHHHHH
Confidence 5667789999999999987653
No 233
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ...
Probab=48.93 E-value=5.2 Score=34.38 Aligned_cols=25 Identities=32% Similarity=0.449 Sum_probs=20.8
Q ss_pred HHHHhhhccCcCHHHHHHHHHc-CCC
Q 012388 293 TISLFGEVWGIGPATAQKLYEK-GHR 317 (464)
Q Consensus 293 ~l~lf~~I~GvGpktA~~ly~~-Gir 317 (464)
+.--|+.|+|||+.+|..+.+. ||.
T Consensus 15 v~~aLt~I~GIG~~~A~~I~~~~gi~ 40 (126)
T 2vqe_M 15 VDVALTYIYGIGKARAKEALEKTGIN 40 (126)
T ss_dssp HHHHHTTSSSCCSHHHHHHTTTTTCC
T ss_pred eeeehhccccccHHHHHHHHHHcCCC
Confidence 4445689999999999999886 874
No 234
>4f4y_A POL IV, DNA polymerase IV; Y-family polymerase, transferase-DNA complex; HET: DNA DCP; 2.34A {Sulfolobus acidocaldarius} PDB: 3bq0_A* 3bq1_A* 3bq2_A* 4hyk_A* 1k1q_A 1k1s_A
Probab=47.77 E-value=15 Score=36.81 Aligned_cols=53 Identities=21% Similarity=0.342 Sum_probs=39.8
Q ss_pred hcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHc--CCCC
Q 012388 256 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK--GHRT 318 (464)
Q Consensus 256 l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~--Girt 318 (464)
+..|||||++++++...+ -+..+.+|.+-.+....+.| |++.+.+||+. |+..
T Consensus 181 v~~l~GiG~~~~~~L~~~----GI~Ti~dL~~~~~~~L~~~f------G~~~g~~l~~~a~G~d~ 235 (362)
T 4f4y_A 181 IDEIPGIGSVLARRLNEL----GIQKLRDILSKNYNELEKIT------GKAKALYLLKLAQDEYN 235 (362)
T ss_dssp STTSTTCCSTTHHHHHHT----TCCBGGGGTTSCHHHHHHHH------CHHHHHHHHHHHTTCCC
T ss_pred hhhccCCCHHHHHHHHHc----CCChHHHHhcCCHHHHHHHh------ChHHHHHHHHHhcCCCC
Confidence 678999999999887764 35666666665566666777 88889999974 8854
No 235
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=47.31 E-value=19 Score=34.61 Aligned_cols=52 Identities=21% Similarity=0.267 Sum_probs=35.3
Q ss_pred HcCC-ChhHHHHHHHHHHHhc--CCccc-cc----hhhhcCCCCCCHHHHHHHHHHHHhCC
Q 012388 226 ALGE-DRRSFSYYKAIPVIEK--LPFKI-ES----ADQVKGLPGIGKSMQDHIQEIVTTGK 278 (464)
Q Consensus 226 ~~g~-~~r~~aY~rAa~~l~~--lp~~I-~s----~~~l~~lpgIG~~ia~kI~Eil~tG~ 278 (464)
-.|- +.|+..-.++|..+.. ++... .+ .++|..|||||+.+|+-|.-+ .-|.
T Consensus 171 ~~G~~~~ra~~i~~~A~~~~~~~~~~~~~~~~~~~~~~L~~lpGIG~~TA~~ill~-~lg~ 230 (282)
T 1mpg_A 171 ALGMPLKRAEALIHLANAALEGTLPMTIPGDVEQAMKTLQTFPGIGRWTANYFALR-GWQA 230 (282)
T ss_dssp HTTSCHHHHHHHHHHHHHHHHTCSCSSCCSCHHHHHHHHTTSTTCCHHHHHHHHHH-HSCC
T ss_pred HcCCCHHHHHHHHHHHHHHHcCCCCccccCCHHHHHHHHhcCCCcCHHHHHHHHHH-hCCC
Confidence 3454 3578777888877764 33222 22 477999999999999988654 3444
No 236
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=46.94 E-value=15 Score=34.43 Aligned_cols=42 Identities=12% Similarity=0.143 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHhc--CC--ccc------cchhhhcCCCCCCHHHHHHHHHH
Q 012388 232 RSFSYYKAIPVIEK--LP--FKI------ESADQVKGLPGIGKSMQDHIQEI 273 (464)
Q Consensus 232 r~~aY~rAa~~l~~--lp--~~I------~s~~~l~~lpgIG~~ia~kI~Ei 273 (464)
|+..-+.+|..+.. +| ..+ +..++|..|||||+.+|+.|.=+
T Consensus 118 Ka~~l~~~A~~~~~g~~p~l~~l~~~~~~~~~~~L~~l~GIG~~TA~~ill~ 169 (232)
T 4b21_A 118 KSQEIHIVAEAALNKQIPSKSEIEKMSEEELMESLSKIKGVKRWTIEMYSIF 169 (232)
T ss_dssp HHHHHHHHHHHHHTTCSCCHHHHHHSCHHHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHcCCHHHHHHHHHhCCCcCHHHHHHHHHH
Confidence 35555556666654 22 001 23468999999999999988644
No 237
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=46.77 E-value=11 Score=35.28 Aligned_cols=21 Identities=14% Similarity=0.366 Sum_probs=17.9
Q ss_pred hhhhcCCCCCCHHHHHHHHHH
Q 012388 253 ADQVKGLPGIGKSMQDHIQEI 273 (464)
Q Consensus 253 ~~~l~~lpgIG~~ia~kI~Ei 273 (464)
.++|..|||||..+|+.|.-+
T Consensus 137 ~~~L~~lpGIG~kTA~~ill~ 157 (233)
T 2h56_A 137 IEKLTAIKGIGQWTAEMFMMF 157 (233)
T ss_dssp HHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHHhCCCcCHHHHHHHHHH
Confidence 467999999999999988644
No 238
>2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A* 3osp_A*
Probab=46.36 E-value=17 Score=37.20 Aligned_cols=56 Identities=18% Similarity=0.268 Sum_probs=38.9
Q ss_pred hcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhh-chhHHHHHhhhccCcCHHHHHHHHHc--CCCCH
Q 012388 256 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKD-EKVRTISLFGEVWGIGPATAQKLYEK--GHRTL 319 (464)
Q Consensus 256 l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~-~~~~~l~lf~~I~GvGpktA~~ly~~--Girtl 319 (464)
+..|||||+++++++.+-+ ..+..+.+|.+- .+....+.| |++...++|+. |+..-
T Consensus 243 v~~l~GiG~~~~~~L~~~~--~GI~ti~dL~~~~~~~~L~~~f------G~~~g~~l~~~a~G~d~~ 301 (434)
T 2aq4_A 243 LDDLPGVGHSTLSRLESTF--DSPHSLNDLRKRYTLDALKASV------GSKLGMKIHLALQGQDDE 301 (434)
T ss_dssp GGGSTTCCHHHHHHHHHHT--TCCCSHHHHHHHCCHHHHHHHH------CSSHHHHHHHHTTTCCCH
T ss_pred cccccCcCHHHHHHHHHhc--CCceEHHHHHhcCCHHHHHHHh------CHHHHHHHHHHhcCCCcc
Confidence 6789999999988887621 134556666655 555566666 67778888875 98763
No 239
>1coo_A RNA polymerase alpha subunit; transcription regulation, nucleotidyl transferase; NMR {Escherichia coli} SCOP: a.60.3.1 PDB: 2jzb_A
Probab=43.74 E-value=20 Score=29.32 Aligned_cols=23 Identities=17% Similarity=0.427 Sum_probs=20.9
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHh
Q 012388 254 DQVKGLPGIGKSMQDHIQEIVTT 276 (464)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~t 276 (464)
+++.+++|+|++....|.+.|+.
T Consensus 56 ~dLlki~n~G~KSl~EI~~~L~~ 78 (98)
T 1coo_A 56 VELLKTPNLGKKSLTEIKDVLAS 78 (98)
T ss_dssp HHHTTSTTCCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHH
Confidence 67999999999999999999974
No 240
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=43.03 E-value=10 Score=33.74 Aligned_cols=19 Identities=21% Similarity=0.121 Sum_probs=15.4
Q ss_pred HHHhhhccCcCHHHHHHHH
Q 012388 294 ISLFGEVWGIGPATAQKLY 312 (464)
Q Consensus 294 l~lf~~I~GvGpktA~~ly 312 (464)
.+.+.++||||+.||..+-
T Consensus 103 ~~~L~~LpGVG~yTAdav~ 121 (161)
T 4e9f_A 103 WKYPIELHGIGKYGNDSYR 121 (161)
T ss_dssp CSSGGGSTTCCHHHHHHHH
T ss_pred hhhhhcCCCchHHHHHHHH
Confidence 3456799999999999864
No 241
>3pkr_A FLIG, flagellar motor switch protein; FLIF, FLIM, MOTA, motor prote; 2.60A {Helicobacter pylori} PDB: 3usw_A 3pl4_A 3usy_A
Probab=42.89 E-value=92 Score=30.06 Aligned_cols=87 Identities=10% Similarity=0.175 Sum_probs=62.7
Q ss_pred HHHHHHHHhcCCccccc--hhhhcCCCCCCHHHHHHHHHHHHh------------CCchhhHHHHhhchhHHH-HHhhhc
Q 012388 236 YYKAIPVIEKLPFKIES--ADQVKGLPGIGKSMQDHIQEIVTT------------GKLSKLEHFEKDEKVRTI-SLFGEV 300 (464)
Q Consensus 236 Y~rAa~~l~~lp~~I~s--~~~l~~lpgIG~~ia~kI~Eil~t------------G~~~~le~l~~~~~~~~l-~lf~~I 300 (464)
-.+||.+|..||..+.. +..+..+.+|-+.+.+.|.+.|+. |-...+-++.|.-....- .+|.++
T Consensus 87 ~~~AA~VL~~Lp~~~r~dV~~Ria~l~~v~p~~l~~le~~L~~~l~~~~~~~~~~gG~~~vA~ILN~~d~~~e~~iL~~L 166 (279)
T 3pkr_A 87 APNAAETLSYFPDEMKAEISIRMANLGEISPQVVKRVSTVLENKLESLTSYKIEVGGLRAVAEIFNRLGQKSAKTTLARI 166 (279)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHTCC---CCCCSHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHhccccccccCcHHHHHHHHHcCChHHHHHHHHHH
Confidence 46899999999988665 356788889999999999998874 223445555555444443 366667
Q ss_pred cCcCHHHHHHHHHcCCCCHHHHh
Q 012388 301 WGIGPATAQKLYEKGHRTLDDLK 323 (464)
Q Consensus 301 ~GvGpktA~~ly~~GirtledL~ 323 (464)
--.-|..|.++ +.-+-++|||.
T Consensus 167 ~~~dpelAe~I-r~~MF~FeDl~ 188 (279)
T 3pkr_A 167 ESVDNKLAGAI-KEMMFTFEDIV 188 (279)
T ss_dssp HTTCHHHHHHH-HTTSCCGGGGG
T ss_pred HhhCHHHHHHH-HHhccCHHHHh
Confidence 77788888887 45677888886
No 242
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=40.13 E-value=86 Score=32.54 Aligned_cols=41 Identities=20% Similarity=0.212 Sum_probs=30.5
Q ss_pred HHHHHHHhhhcCCCEEEEEcccccccCCc-CCCccEEEeCCC
Q 012388 355 ERLLQKAGEEVLPEVIILCGGSYRRGKAS-CGDLDVVIMHPD 395 (464)
Q Consensus 355 ~~iv~~~~~~~~p~~~v~~~GsyRRgke~-~gDvDiLit~~d 395 (464)
-..|+++.....|++.|.+-||+.=|--. .+|||+.|..++
T Consensus 159 v~~le~ii~~~fP~a~V~~FGS~~tGL~lp~SDIDlvl~~~~ 200 (464)
T 3pq1_A 159 CSLIEDMAAAYFPDCIVRPFGSSVNTFGKLGCDLDMFLDLDE 200 (464)
T ss_dssp HHHHHHHHTTTSTTCEEEEEGGGTSSCCBTTCCEEEEEECC-
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCccCCCCCCCCeEEEEecCC
Confidence 34455556667899999999999987554 679999986543
No 243
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=39.93 E-value=27 Score=32.45 Aligned_cols=42 Identities=14% Similarity=0.154 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHhcCCcccc---------chhhhcCCCCCCHHHHHHHHHH
Q 012388 232 RSFSYYKAIPVIEKLPFKIE---------SADQVKGLPGIGKSMQDHIQEI 273 (464)
Q Consensus 232 r~~aY~rAa~~l~~lp~~I~---------s~~~l~~lpgIG~~ia~kI~Ei 273 (464)
|+..-..+|..+..=...+. ..++|..|||||..+|+.|--+
T Consensus 115 KA~~i~~lA~~~~~g~~~l~~l~~~~~~e~~~~L~~l~GIG~~TA~~ill~ 165 (225)
T 2yg9_A 115 KVRTVQAAAAAAVSGQIDFAHLSGQPDELVIAELVQLPGIGRWTAEMFLLF 165 (225)
T ss_dssp HHHHHHHHHHHHHTTSSCGGGCTTSCHHHHHHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcCHHHHhcCCHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 55555666666654111111 1367999999999999988644
No 244
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=39.50 E-value=21 Score=33.17 Aligned_cols=21 Identities=19% Similarity=0.298 Sum_probs=17.8
Q ss_pred hhhhc-CCCCCCHHHHHHHHHH
Q 012388 253 ADQVK-GLPGIGKSMQDHIQEI 273 (464)
Q Consensus 253 ~~~l~-~lpgIG~~ia~kI~Ei 273 (464)
.++|. +|||||.++|+.|--+
T Consensus 123 re~Ll~~LpGVG~KTA~~vL~~ 144 (214)
T 3fhf_A 123 REFLVRNIKGIGYKEASHFLRN 144 (214)
T ss_dssp HHHHHHHSTTCCHHHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHH
Confidence 46788 9999999999998654
No 245
>1t94_A Polymerase (DNA directed) kappa; replication, DNA repair, Y-family DNA polymerase, translesion DNA synthesis, lesion bypass; 2.40A {Homo sapiens} SCOP: d.240.1.1 e.8.1.7 PDB: 2oh2_A* 2w7o_A* 2w7p_A* 3hed_A* 3in5_A*
Probab=38.51 E-value=35 Score=35.10 Aligned_cols=52 Identities=13% Similarity=0.281 Sum_probs=35.6
Q ss_pred hcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHc--CCCC
Q 012388 256 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK--GHRT 318 (464)
Q Consensus 256 l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~--Girt 318 (464)
+..|||||+.+++++..+ .+..+.+|.+. +....+.| |++++..||+. |+..
T Consensus 284 v~~l~GiG~~~~~~L~~l----GI~T~gdL~~~-~~~L~~~f------G~~~~~~l~~~a~G~d~ 337 (459)
T 1t94_A 284 IRKVSGIGKVTEKMLKAL----GIITCTELYQQ-RALLSLLF------SETSWHYFLHISLGLGS 337 (459)
T ss_dssp GGGCTTSCHHHHHHHHHT----TCCBHHHHHHT-HHHHHHHS------CHHHHHHHHHHHTTCCC
T ss_pred HHhcCCcCHHHHHHHHHc----CCCcHHHHHhh-HHHHHHHh------ChHhHHHHHHHHcCCCC
Confidence 678999999988877543 34555566543 34445555 78888889874 8854
No 246
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=37.72 E-value=27 Score=32.61 Aligned_cols=42 Identities=14% Similarity=0.203 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHhc--CCc--cccc------hhhhcCCCCCCHHHHHHHHHH
Q 012388 232 RSFSYYKAIPVIEK--LPF--KIES------ADQVKGLPGIGKSMQDHIQEI 273 (464)
Q Consensus 232 r~~aY~rAa~~l~~--lp~--~I~s------~~~l~~lpgIG~~ia~kI~Ei 273 (464)
|+..-..+|..+.+ +|. .+.. .++|..|||||..+|+.|.-+
T Consensus 107 Ka~~i~~~A~~~~~g~~p~~~~l~~~~~~e~~~~L~~l~GIG~~TA~~ill~ 158 (228)
T 3s6i_A 107 KIDSLKSIAEATISGLIPTKEEAERLSNEELIERLTQIKGIGRWTVEMLLIF 158 (228)
T ss_dssp HHHHHHHHHHHHHHTSSCCHHHHTTSCHHHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCChHHHhcCCHHHHHHHHHhCCCcCHHHHHHHHHH
Confidence 45555666666653 221 1111 467999999999999988643
No 247
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=37.01 E-value=7.2 Score=41.61 Aligned_cols=45 Identities=24% Similarity=0.352 Sum_probs=8.0
Q ss_pred hccCcCHHHHHHHHHc-CCCCHHHHhhcc-CcchHHHhhHhhHHhhc
Q 012388 299 EVWGIGPATAQKLYEK-GHRTLDDLKNED-SLTHSQRLGLKYFDDIK 343 (464)
Q Consensus 299 ~I~GvGpktA~~ly~~-GirtledL~~~~-~L~~~q~~Glk~~ed~~ 343 (464)
+=+||+++.|.++|+. |-.+++-|+++. +|....++|++..|.|.
T Consensus 15 ~~~g~~~~~a~~i~~~yg~~~~~~i~~nPy~l~~i~gigf~~aD~ia 61 (574)
T 3e1s_A 15 QGLGLTINQAQRAVKHFGADALDRLEKDLFTLTEVEGIGFLTADKLW 61 (574)
T ss_dssp -----------------------------CGGGTSSSCCHHHHHTTC
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHhCCcccCCcCCCCHHHHHHHH
Confidence 4555555555555554 555555555432 34334455555555444
No 248
>2csb_A Topoisomerase V, TOP61; topoisomerase IB, helix-turn-helix, helix-H helix, HHH motif, three helix bundle, methanopyrus kandleri isomerase; 2.30A {Methanopyrus kandleri} SCOP: a.60.2.4 a.60.2.4 a.60.2.4 a.60.2.4 a.267.1.1 PDB: 2csd_A
Probab=36.76 E-value=45 Score=32.16 Aligned_cols=83 Identities=20% Similarity=0.392 Sum_probs=44.9
Q ss_pred HHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHc-CC-CCHHHHhhcc---CcchHHHhhHhhHHhh--
Q 012388 270 IQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GH-RTLDDLKNED---SLTHSQRLGLKYFDDI-- 342 (464)
Q Consensus 270 I~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~-Gi-rtledL~~~~---~L~~~q~~Glk~~ed~-- 342 (464)
|+-..+.|++++- ..++.... .+..+++-.|||.|||.+|... |- .-+.+|-+.- +|....+.|-+-...+
T Consensus 388 iermyeegrlsee-ayraavei-qlaeltkkegvgrktaerllrafgnpervkqlarefeieklasvegvgervlrslvp 465 (519)
T 2csb_A 388 IERMYEEGRLSEE-AYRAAVEI-QLAELTKKEGVGRKTAERLLRAFGNPERVKQLAREFEIEKLASVEGVGERVLRSLVP 465 (519)
T ss_dssp HHHHHHHTSSCHH-HHHHHHHH-HHHHHHTSTTCCHHHHHHHHHHHSSHHHHHHHHHTTCHHHHHTSTTCSHHHHHHHST
T ss_pred HHHHHHcccccHH-HHHHHHHH-HHHHHhhhcccchhHHHHHHHHhCCHHHHHHHHHHHhHHHHhhccchHHHHHHHhcc
Confidence 4444556666542 22332323 3455679999999999999886 52 3333443332 3444555554333222
Q ss_pred -------ccCCCHHHHHHH
Q 012388 343 -------KTRIPRHEVEQM 354 (464)
Q Consensus 343 -------~~~i~r~Ea~~i 354 (464)
...|.|+.|+.+
T Consensus 466 gyaslisirgidreraerl 484 (519)
T 2csb_A 466 GYASLISIRGIDRERAERL 484 (519)
T ss_dssp THHHHHTSTTCCHHHHHHH
T ss_pred chhhheeeccccHHHHHHH
Confidence 135666666543
No 249
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=36.36 E-value=2.5e+02 Score=27.04 Aligned_cols=52 Identities=4% Similarity=0.143 Sum_probs=32.7
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHH
Q 012388 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 313 (464)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~ 313 (464)
..|.+|||||..+++++. +. .+..++++..-.+...-+++ |+++..++++++
T Consensus 157 ~pL~Qlp~i~~~~~~~l~---~~-~i~s~~~l~~~~~~e~~~ll----~~~~~~~~~v~~ 208 (328)
T 3im1_A 157 NPLRQIPHFNNKILEKCK---EI-NVETVYDIMALEDEERDEIL----TLTDSQLAQVAA 208 (328)
T ss_dssp CGGGGSTTCCHHHHHHHH---HT-TCCSHHHHHHSCHHHHHHHC----CCCHHHHHHHHH
T ss_pred CceeCCCCCCHHHHHHHH---hC-CCCCHHHHhcCCHHHHHhHh----CCCHHHHHHHHH
Confidence 458999999999888764 33 34556666544444333333 677766666544
No 250
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=35.71 E-value=1.9e+02 Score=30.87 Aligned_cols=49 Identities=14% Similarity=0.301 Sum_probs=36.8
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHH
Q 012388 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE 313 (464)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~ 313 (464)
-.|.+|||||...|.++. +.| +..++++. ..+....+++ |++.++++++
T Consensus 657 ~~L~qlp~i~~~rar~L~---~~g-~~s~~~l~-~~~~~l~~~l------~~~~~~~i~~ 705 (715)
T 2va8_A 657 LELVQISGVGRKRARLLY---NNG-IKELGDVV-MNPDKVKNLL------GQKLGEKVVQ 705 (715)
T ss_dssp HHHHTSTTCCHHHHHHHH---HTT-CCSHHHHH-HCHHHHHHHH------CHHHHHHHHH
T ss_pred cchhhCCCCCHHHHHHHH---HcC-CCCHHHHh-CCHHHHHHHh------ChhHHHHHHH
Confidence 468899999999999764 555 47788887 6677777776 3676766665
No 251
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=35.34 E-value=7.9 Score=37.77 Aligned_cols=29 Identities=28% Similarity=0.411 Sum_probs=0.0
Q ss_pred hhhccCcCHHHHHHHHHcCCCCHHHHhhc
Q 012388 297 FGEVWGIGPATAQKLYEKGHRTLDDLKNE 325 (464)
Q Consensus 297 f~~I~GvGpktA~~ly~~GirtledL~~~ 325 (464)
+..++||++.++++|-+.|+.|++++...
T Consensus 14 ~~~l~g~~~~~~~~l~~~g~~t~~~~~~~ 42 (324)
T 2z43_A 14 INDLPGISQTVINKLIEAGYSSLETLAVA 42 (324)
T ss_dssp -----------------------------
T ss_pred HHHcCCCCHHHHHHHHHcCCCcHHHHHcC
Confidence 34677999999999999999999999743
No 252
>3k7d_A Glutamate-ammonia-ligase adenylyltransferase; nucleotidyl transferase domain, ATP-binding, nucleotide-BIND nucleotidyltransferase; 2.40A {Escherichia coli}
Probab=34.88 E-value=67 Score=33.61 Aligned_cols=28 Identities=18% Similarity=0.278 Sum_probs=22.3
Q ss_pred CEEEEEcccccccCCc-CCCccEEEeCCC
Q 012388 368 EVIILCGGSYRRGKAS-CGDLDVVIMHPD 395 (464)
Q Consensus 368 ~~~v~~~GsyRRgke~-~gDvDiLit~~d 395 (464)
++-|..+|+|-|+.-+ +.|||+++.+++
T Consensus 234 ~~aviamGklGg~EL~~~SDiDlifv~~~ 262 (498)
T 3k7d_A 234 GFAVVGYGKLGGWELGYSSDLDLIFLHDC 262 (498)
T ss_dssp SEEEEEEHHHHTTCCCTTCCEEEEEEECC
T ss_pred CEEEEeeccccccccCcccccceeeeecC
Confidence 4677889999887654 899999998764
No 253
>2i5u_A DNAD domain protein; structural genomics, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG, U function; HET: MSE; 1.50A {Enterococcus faecalis} SCOP: a.275.1.1
Probab=31.96 E-value=20 Score=27.93 Aligned_cols=19 Identities=11% Similarity=0.345 Sum_probs=11.9
Q ss_pred HHHHHHHHHcCCCCHHHHh
Q 012388 305 PATAQKLYEKGHRTLDDLK 323 (464)
Q Consensus 305 pktA~~ly~~GirtledL~ 323 (464)
-+..+.|+++|++|++|++
T Consensus 64 ~~IL~~W~~~gi~T~e~v~ 82 (83)
T 2i5u_A 64 NAILKDWEQRGFKSVEERE 82 (83)
T ss_dssp HHHHHHHHHHTCCC-----
T ss_pred HHHHHHHHHcCCCCHHHHh
Confidence 3567889999999999985
No 254
>4ecq_A DNA polymerase ETA; transferase-DNA complex; HET: DNA DTP; 1.50A {Homo sapiens} PDB: 3mr2_A* 3mr4_A* 3mr5_A* 3si8_A* 4dl2_A* 4dl3_A* 4dl4_A* 4dl5_A* 4dl6_A* 4dl7_A* 3mr3_A* 4ecr_A* 4ecs_A* 4ect_A* 4ecu_A* 4ecv_A* 4ecw_A* 4ecx_A* 4ecy_A* 4ecz_A* ...
Probab=31.81 E-value=56 Score=33.37 Aligned_cols=54 Identities=19% Similarity=0.372 Sum_probs=35.7
Q ss_pred hcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHc--CCCC
Q 012388 256 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK--GHRT 318 (464)
Q Consensus 256 l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~--Girt 318 (464)
+..|+|||.+++.++-+-+ | +..+.+|.+-.+..+.+.| |++++..||+. |+..
T Consensus 255 v~~l~GiG~~~~~~lL~~l--G-I~TigdLa~~~~~~L~~~f------G~~~g~~L~~~a~G~d~ 310 (435)
T 4ecq_A 255 IRKIRSLGGKLGASVIEIL--G-IEYMGELTQFTESQLQSHF------GEKNGSWLYAMCRGIEH 310 (435)
T ss_dssp GGGSTTCSSHHHHHHHHHH--T-CCBGGGGGGSCHHHHHHHH------CHHHHHHHHHHTTTCCC
T ss_pred HHHhcCCCHHHHHHHHHHc--C-CCcHHHHhhCCHHHHHHHh------CccHHHHHHHHhhCCCC
Confidence 6788999998876642222 2 3444555554555566666 78899999874 8853
No 255
>3mfi_A DNA polymerase ETA; DNA damage, DNA repair, DNA replication, DNA synthesis, NUCL binding, magnesium; HET: DNA DOC TTD DTP; 1.76A {Saccharomyces cerevisiae} PDB: 3mfh_A* 3oha_A* 3ohb_A* 2r8j_A* 2r8k_A* 2wtf_A* 2xgp_A* 2xgq_A* 1jih_A*
Probab=31.09 E-value=19 Score=38.05 Aligned_cols=19 Identities=5% Similarity=0.317 Sum_probs=16.5
Q ss_pred hcCCCCCCHHHHHHHHHHH
Q 012388 256 VKGLPGIGKSMQDHIQEIV 274 (464)
Q Consensus 256 l~~lpgIG~~ia~kI~Eil 274 (464)
+..|+|||+++++++..++
T Consensus 309 V~~l~GIG~~t~~~L~~ll 327 (520)
T 3mfi_A 309 ITSFWTLGGVLGKELIDVL 327 (520)
T ss_dssp GGGSTTCSSHHHHHHHHHT
T ss_pred HHHhcCCCHHHHHHHHHhc
Confidence 5678999999999999874
No 256
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=31.05 E-value=17 Score=33.89 Aligned_cols=21 Identities=19% Similarity=0.213 Sum_probs=17.5
Q ss_pred hhhhc-CCCCCCHHHHHHHHHH
Q 012388 253 ADQVK-GLPGIGKSMQDHIQEI 273 (464)
Q Consensus 253 ~~~l~-~lpgIG~~ia~kI~Ei 273 (464)
.++|. +|||||..+|+.|--+
T Consensus 128 r~~L~~~l~GVG~kTA~~vL~~ 149 (219)
T 3n0u_A 128 REFLVRNAKGIGWKEASHFLRN 149 (219)
T ss_dssp HHHHHHHSTTCCHHHHHHHHHT
T ss_pred HHHHHHhCCCCCHHHHHHHHHH
Confidence 36788 9999999999988543
No 257
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=30.64 E-value=10 Score=40.49 Aligned_cols=50 Identities=26% Similarity=0.345 Sum_probs=15.7
Q ss_pred CCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHc-CCCC
Q 012388 261 GIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK-GHRT 318 (464)
Q Consensus 261 gIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~-Girt 318 (464)
||+.++|.+|....-...+ +.++ +.||.. ..|+|||.++|..+-.. |+..
T Consensus 18 g~~~~~a~~i~~~yg~~~~---~~i~-~nPy~l----~~i~gigf~~aD~ia~~~g~~~ 68 (574)
T 3e1s_A 18 GLTINQAQRAVKHFGADAL---DRLE-KDLFTL----TEVEGIGFLTADKLWQARGGAL 68 (574)
T ss_dssp ------------------------------CGG----GTSSSCCHHHHHTTC-------
T ss_pred CCCHHHHHHHHHHHHHHHH---HHHH-hCCccc----CCcCCCCHHHHHHHHHHcCCCC
Confidence 8899999999887755443 3333 356654 48999999999999887 8854
No 258
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=29.51 E-value=1.2e+02 Score=24.28 Aligned_cols=57 Identities=16% Similarity=0.246 Sum_probs=34.0
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHH-----HhhchhHHHHHhhhccCcCHHHHHHHHH
Q 012388 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHF-----EKDEKVRTISLFGEVWGIGPATAQKLYE 313 (464)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l-----~~~~~~~~l~lf~~I~GvGpktA~~ly~ 313 (464)
.++..+||||+..+.+..| .|--....-| .........+-|..+-|+-.|-|..-|+
T Consensus 18 K~V~evpGIG~~~~~~L~~---~Gf~kAy~lLGqFL~l~kd~~~F~~WLk~~~gan~kq~~dc~~ 79 (89)
T 1ci4_A 18 KPVGSLAGIGEVLGKKLEE---RGFDKAYVVLGQFLVLKKDEDLFREWLKDTCGANAKQSRDCFG 79 (89)
T ss_dssp CCGGGSTTCCHHHHHHHHH---TTCCSHHHHHHHHHHTTTCHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred CCcccCCCcCHHHHHHHHH---cCccHHHHHHHHHHHcCCCHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 4689999999999998877 4432222111 1112223444455566777777776554
No 259
>2zix_A Crossover junction endonuclease MUS81; helix-hairpin-helix, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium, metal-binding, nucleus; 3.50A {Homo sapiens}
Probab=27.96 E-value=8.6 Score=37.55 Aligned_cols=59 Identities=15% Similarity=0.284 Sum_probs=36.4
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhh-HHHHhh-chhHHHHHhhhc-cC-----cCHHHHHHHHHc
Q 012388 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKL-EHFEKD-EKVRTISLFGEV-WG-----IGPATAQKLYEK 314 (464)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~l-e~l~~~-~~~~~l~lf~~I-~G-----vGpktA~~ly~~ 314 (464)
.+|..|||||...|..|.+. -++...| +.++.. .+.....+|.++ .| ||+..++++|+.
T Consensus 233 ~~L~~I~GVs~~~A~~I~~~--ypTp~~L~~Ay~~~~~~~e~~~lL~~l~~g~~~r~IG~~lSrkI~~~ 299 (307)
T 2zix_A 233 RQLMQVRGVSGEKAAALVDR--YSTPASLLAAYDACATPKEQETLLSTIKCGRLQRNLGPALSRTLSQL 299 (307)
T ss_dssp HTTTCSTTCCSTTTTTSSSS--SCSHHHHHHHHHCCSSGGGTTTTTSCCCCTTTTCCCCHHHHHHHHHH
T ss_pred HHHHhccCCCHHHHHHHHHH--cCCHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCccCHHHHHHHHHH
Confidence 67999999999888877663 3333333 222220 111222344455 23 999999999985
No 260
>3bbn_M Ribosomal protein S13; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=27.95 E-value=5.9 Score=34.78 Aligned_cols=21 Identities=14% Similarity=0.328 Sum_probs=19.0
Q ss_pred HhhhccCcCHHHHHHHHHc-CC
Q 012388 296 LFGEVWGIGPATAQKLYEK-GH 316 (464)
Q Consensus 296 lf~~I~GvGpktA~~ly~~-Gi 316 (464)
-|+.|+|||+.+|+++.+. ||
T Consensus 63 aLt~IyGIG~~~A~~I~~~~gI 84 (145)
T 3bbn_M 63 SLQYIHGIGRSRSRQILLDLNF 84 (145)
T ss_dssp GGGGSTTCCSSTTTGGGTTTTC
T ss_pred eeeeecCccHHHHHHHHHHcCC
Confidence 3689999999999999987 98
No 261
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=26.42 E-value=84 Score=30.04 Aligned_cols=62 Identities=24% Similarity=0.394 Sum_probs=41.1
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHH-------cCCCCHHHHh
Q 012388 254 DQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYE-------KGHRTLDDLK 323 (464)
Q Consensus 254 ~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~-------~GirtledL~ 323 (464)
.++..||||++.++.|..+ .| +.-++++....+ ..|.++.|+..++|.+|.+ .|+.|-.++.
T Consensus 3 ~~~~~l~gi~~~~~~kL~~---~g-i~t~~~~~~~~~----~~L~~~~gis~~~a~~~i~~a~~~~~~~~~~~~~~~ 71 (322)
T 2i1q_A 3 DNLTDLPGVGPSTAEKLVE---AG-YIDFMKIATATV----GELTDIEGISEKAAAKMIMGARDLCDLGFKSGIDLL 71 (322)
T ss_dssp --CTTSTTCCHHHHHHHHH---HT-CCSHHHHHTCCH----HHHHTSTTCCHHHHHHHHHHHHHHTTCSCCCTHHHH
T ss_pred ccHhhcCCCCHHHHHHHHH---cC-CCcHHHHHhCCH----HHHHHhhCcCHHHHHHHHHHHHHhhhhcCCcHHHHH
Confidence 4688899999999888765 34 455666554332 2345788999888888764 2666666664
No 262
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=26.26 E-value=37 Score=26.96 Aligned_cols=21 Identities=14% Similarity=-0.056 Sum_probs=16.7
Q ss_pred HHHHhhhccCcCHHHHHHHHH
Q 012388 293 TISLFGEVWGIGPATAQKLYE 313 (464)
Q Consensus 293 ~l~lf~~I~GvGpktA~~ly~ 313 (464)
.-.....++|||++++++|-+
T Consensus 56 s~~e~~~L~giG~ki~~~L~e 76 (87)
T 2kp7_A 56 SGKEAKILQHFGDRLCRMLDE 76 (87)
T ss_dssp SHHHHHTCTTTCHHHHHHHHH
T ss_pred CHHHHHHhhcccHHHHHHHHH
Confidence 344556999999999999864
No 263
>1v4a_A Glutamate-ammonia-ligase adenylyltransferase; main alpha helix, DNA polymerase beta motif; 2.00A {Escherichia coli} SCOP: a.24.16.4 d.218.1.9
Probab=24.13 E-value=1.4e+02 Score=30.53 Aligned_cols=28 Identities=25% Similarity=0.551 Sum_probs=21.1
Q ss_pred CEEEEEcccccccCCc-CCCccEEEeCCC
Q 012388 368 EVIILCGGSYRRGKAS-CGDLDVVIMHPD 395 (464)
Q Consensus 368 ~~~v~~~GsyRRgke~-~gDvDiLit~~d 395 (464)
++-|..+|||-|+.-+ +.|||+++.+++
T Consensus 154 ~~aviamGk~Gr~EL~~~SDiDli~l~~~ 182 (440)
T 1v4a_A 154 PLLILGMGKLGGGELNFSSDIDLIFAWPE 182 (440)
T ss_dssp CCEEEECHHHHTTCCCSSCCEEEEEEECC
T ss_pred CEEEEEeccccccCcCCCCCcceEEEeCC
Confidence 3567788999876554 679999988764
No 264
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}
Probab=24.05 E-value=61 Score=25.50 Aligned_cols=52 Identities=23% Similarity=0.242 Sum_probs=37.6
Q ss_pred ccCcCHHHHHHHHHcCCCCHHHHhhccCcchHHHhhHhhHHhhccCCCHHHHHHHHHHHHHH
Q 012388 300 VWGIGPATAQKLYEKGHRTLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKA 361 (464)
Q Consensus 300 I~GvGpktA~~ly~~GirtledL~~~~~L~~~q~~Glk~~ed~~~~i~r~Ea~~i~~iv~~~ 361 (464)
+||+-+..++.|-+.||+|.+|+.....+.-++..|+ +..++.++...+.+.
T Consensus 9 ~p~Lse~~~~~L~~~~I~Tv~Dfl~~d~~eL~~~~~l----------s~~~v~~l~r~l~~~ 60 (83)
T 2kz3_A 9 CPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGL----------SYKALVALRRVLLAQ 60 (83)
T ss_dssp STTCCHHHHHHHHHTTCCCHHHHTTSCHHHHHHHHTC----------CHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHCCCCCHHHHHhCCHHHHHHHhCC----------CHHHHHHHHHHHHHH
Confidence 4899999999999999999999997664444444444 456666665555544
No 265
>1coo_A RNA polymerase alpha subunit; transcription regulation, nucleotidyl transferase; NMR {Escherichia coli} SCOP: a.60.3.1 PDB: 2jzb_A
Probab=24.00 E-value=15 Score=30.10 Aligned_cols=45 Identities=22% Similarity=0.257 Sum_probs=33.3
Q ss_pred hccCcCHHHHHHHHHcCCCCHHHHhhc--cCcchHHHhhHhhHHhhc
Q 012388 299 EVWGIGPATAQKLYEKGHRTLDDLKNE--DSLTHSQRLGLKYFDDIK 343 (464)
Q Consensus 299 ~I~GvGpktA~~ly~~GirtledL~~~--~~L~~~q~~Glk~~ed~~ 343 (464)
.--++.++...-|-+.||.|+.||... ..|-++..||-|..++|.
T Consensus 27 e~L~LSvRs~NcLkragI~Tv~dL~~~se~dLlki~n~G~KSl~EI~ 73 (98)
T 1coo_A 27 DDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIK 73 (98)
T ss_dssp GGGTCCTTTHHHHHTTTCCBHHHHHTSCHHHHTTSTTCCHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHhcCCCCHHHHHHHH
Confidence 334667777788888899999999854 347777788888766554
No 266
>3pzp_A DNA polymerase kappa; DNA nucleotidyltransferase, DNA binding nucleotide binding M binding, nucleus; HET: DNA TTD DTP; 3.34A {Homo sapiens}
Probab=23.80 E-value=89 Score=32.71 Aligned_cols=52 Identities=13% Similarity=0.281 Sum_probs=33.2
Q ss_pred hcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHHHHc--CCCC
Q 012388 256 VKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKLYEK--GHRT 318 (464)
Q Consensus 256 l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~ly~~--Girt 318 (464)
+..|||||+.++++...+ .+..+.+|.+. +......| |+..+..||+. |+..
T Consensus 340 V~kl~GIG~~t~~~L~~l----GI~TigDL~~~-~~~L~~~f------G~~~~~~l~~~a~Gid~ 393 (517)
T 3pzp_A 340 IRKVSGIGKVTEKMLKAL----GIITCTELYQQ-RALLSLLF------SETSWHYFLHISLGLGS 393 (517)
T ss_dssp GGGSTTCCHHHHHHHHHT----TCCBHHHHHHH-HHHHHHHS------CHHHHHHHHHHHTTCCC
T ss_pred hhhhccccHHHHHHHHHh----CCCcHHHHHhh-HHHHHHHh------ChHHHHHHHHHHcCCCc
Confidence 677999999888877654 34555555543 32233344 67777888754 8754
No 267
>3t7k_A RTT107, regulator of TY1 transposition protein 107; BRCT, DNA repair, phospho-peptide, protein binding; HET: SEP; 2.03A {Saccharomyces cerevisiae} PDB: 3t7j_A* 3t7i_A
Probab=20.37 E-value=2.5e+02 Score=26.73 Aligned_cols=85 Identities=12% Similarity=0.038 Sum_probs=54.5
Q ss_pred CCCCCCCCe---EEEEecCCCCchHHHHHHHHHHhcCCEEEeecCC--------------------CccEEEEcCChH-H
Q 012388 14 DSNGIFAGM---RVFLVEKGVQNRRLQIWRQKLVQMGATVEEKLSK--------------------KVTHVLAMDLEA-L 69 (464)
Q Consensus 14 ~~~~~F~g~---~vy~~~~~~g~~R~~~l~~~i~~~Gg~V~~~ls~--------------------~VTHVV~~~~~~-~ 69 (464)
.++.+|.++ .|++++.=-|.. +.++..+..||+.=+..+.. ...+|+.....- +
T Consensus 131 ~~gkLf~~~~I~ciNls~dI~GG~--e~issIleahG~~~~~~l~~~~~~~~dl~~n~~~~~~~~~~~~~ILia~K~~q~ 208 (256)
T 3t7k_A 131 LPTKVFERANIRCINLVNDIPGGV--DTIGSVLKAHGIEKINVLRSKKCTFEDIIPNDVSKQENGGIFKYVLIVTKASQV 208 (256)
T ss_dssp SSSCHHHHTTCCEEEEETTCTTCH--HHHHHHHHHTTCCEEEEECTTTCCGGGCCCCC--------CCSEEEECSCHHHH
T ss_pred cccccccCCcceeeeeccCCCCCH--HHHHHHHHHcCCceeeecccccccHHHhhhccccccccCCCCCEEEEEccHHHH
Confidence 457899999 788887644443 45799999999965554322 245777766543 3
Q ss_pred HHHHHHHh-h-hccCccccccchHHHHHhcCCC
Q 012388 70 LQQVSKQH-L-ARFKGSVIRYQWLEDSLRLGEK 100 (464)
Q Consensus 70 ~~~l~~~~-~-~~~~~~iV~~~Wl~ec~k~g~l 100 (464)
.++.+.-. . .....-+|.++|...|+-.-++
T Consensus 209 k~Fkk~~~~~~~n~~~lvveWdWCVksIF~lev 241 (256)
T 3t7k_A 209 KKFTKLINDRDKNETILIVEWNWCVESIFHLNV 241 (256)
T ss_dssp HHHHHHHHHHSTTSCEEEECHHHHHHHHHTTSC
T ss_pred HHHHHHhhcccccceEEEEEcHHHHHHHhheee
Confidence 33222111 1 1124689999999999988554
No 268
>2csb_A Topoisomerase V, TOP61; topoisomerase IB, helix-turn-helix, helix-H helix, HHH motif, three helix bundle, methanopyrus kandleri isomerase; 2.30A {Methanopyrus kandleri} SCOP: a.60.2.4 a.60.2.4 a.60.2.4 a.60.2.4 a.267.1.1 PDB: 2csd_A
Probab=20.01 E-value=3.4e+02 Score=26.13 Aligned_cols=66 Identities=15% Similarity=0.344 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHhcCCccccchhhhcCCCCCCHHHHHHHHHHHHhCCchhhHHHHhhchhHHHHHhhhccCcCHHHHHHH
Q 012388 232 RSFSYYKAIPVIEKLPFKIESADQVKGLPGIGKSMQDHIQEIVTTGKLSKLEHFEKDEKVRTISLFGEVWGIGPATAQKL 311 (464)
Q Consensus 232 r~~aY~rAa~~l~~lp~~I~s~~~l~~lpgIG~~ia~kI~Eil~tG~~~~le~l~~~~~~~~l~lf~~I~GvGpktA~~l 311 (464)
.--||+.|... .+.++.+-.|+|.++|+.+- -.-|.-..+..+..+- -++-+.+|.|||....+.|
T Consensus 398 seeayraavei---------qlaeltkkegvgrktaerll--rafgnpervkqlaref---eieklasvegvgervlrsl 463 (519)
T 2csb_A 398 SEEAYRAAVEI---------QLAELTKKEGVGRKTAERLL--RAFGNPERVKQLAREF---EIEKLASVEGVGERVLRSL 463 (519)
T ss_dssp CHHHHHHHHHH---------HHHHHHTSTTCCHHHHHHHH--HHHSSHHHHHHHHHTT---CHHHHHTSTTCSHHHHHHH
T ss_pred cHHHHHHHHHH---------HHHHHhhhcccchhHHHHHH--HHhCCHHHHHHHHHHH---hHHHHhhccchHHHHHHHh
Confidence 34578766532 14577888899999998653 3457666666654321 2333446666666655554
Done!