Query 012390
Match_columns 464
No_of_seqs 220 out of 1637
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 02:08:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012390.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012390hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10872 relA (p)ppGpp synthet 100.0 5.4E-69 1.2E-73 589.1 27.5 246 215-464 18-266 (743)
2 COG0317 SpoT Guanosine polypho 100.0 7.1E-68 1.5E-72 574.1 23.6 246 212-464 7-255 (701)
3 PRK11092 bifunctional (p)ppGpp 100.0 9.5E-66 2.1E-70 563.0 25.3 244 214-464 4-250 (702)
4 KOG1157 Predicted guanosine po 100.0 4.9E-64 1.1E-68 510.1 21.2 296 130-464 6-303 (543)
5 TIGR00691 spoT_relA (p)ppGpp s 100.0 1.1E-61 2.3E-66 530.8 22.9 222 236-464 1-225 (683)
6 PF13328 HD_4: HD domain; PDB: 100.0 5.9E-41 1.3E-45 304.0 6.4 152 236-391 1-153 (153)
7 TIGR03276 Phn-HD phosphonate d 98.3 1.1E-06 2.4E-11 83.4 7.4 71 244-314 13-102 (179)
8 smart00471 HDc Metal dependent 95.8 0.021 4.5E-07 46.7 5.5 37 252-288 2-44 (124)
9 PF01966 HD: HD domain; Inter 95.0 0.043 9.2E-07 45.6 4.9 33 256-288 2-41 (122)
10 TIGR03401 cyanamide_fam HD dom 94.4 0.47 1E-05 46.9 11.4 128 226-374 34-182 (228)
11 PRK12703 tRNA 2'-O-methylase; 93.9 0.79 1.7E-05 48.0 12.3 149 232-402 171-332 (339)
12 cd00077 HDc Metal dependent ph 93.6 0.13 2.8E-06 42.6 4.9 35 254-288 2-44 (145)
13 TIGR00295 conserved hypothetic 89.4 2.2 4.7E-05 39.8 8.7 57 253-309 12-86 (164)
14 PRK10119 putative hydrolase; P 85.2 4.5 9.8E-05 40.2 8.6 52 232-286 6-62 (231)
15 COG1418 Predicted HD superfami 84.9 1.5 3.2E-05 43.2 5.0 39 251-289 33-76 (222)
16 COG4341 Predicted HD phosphohy 84.2 1.1 2.4E-05 42.8 3.6 35 250-284 24-60 (186)
17 PRK03826 5'-nucleotidase; Prov 79.4 6.1 0.00013 38.3 6.9 35 253-287 27-72 (195)
18 TIGR00277 HDIG uncharacterized 77.1 3.4 7.3E-05 32.1 3.7 34 253-286 3-41 (80)
19 PF12917 HD_2: HD containing h 75.8 9.3 0.0002 37.8 7.1 101 253-360 28-143 (215)
20 PF09371 Tex_N: Tex-like prote 74.4 40 0.00088 32.7 11.0 66 375-442 89-180 (193)
21 COG1896 Predicted hydrolases o 69.2 29 0.00064 33.5 8.7 97 251-359 30-141 (193)
22 PF13023 HD_3: HD domain; PDB: 69.0 25 0.00054 32.8 8.0 96 252-360 20-129 (165)
23 COG1713 Predicted HD superfami 64.2 9.1 0.0002 37.2 4.1 37 253-289 16-57 (187)
24 TIGR00488 putative HD superfam 63.3 9 0.0002 35.1 3.8 34 253-286 7-45 (158)
25 PRK12704 phosphodiesterase; Pr 62.8 21 0.00045 39.6 7.1 36 251-286 332-372 (520)
26 PRK00106 hypothetical protein; 61.3 25 0.00055 39.2 7.5 37 251-287 347-388 (535)
27 COG1078 HD superfamily phospho 60.8 5.2 0.00011 43.1 2.0 30 255-284 52-95 (421)
28 PRK12705 hypothetical protein; 59.6 36 0.00077 37.8 8.2 36 251-286 320-360 (508)
29 PF05153 DUF706: Family of unk 57.9 18 0.0004 36.6 5.1 53 232-284 40-93 (253)
30 COG2357 PpGpp synthetase catal 57.6 12 0.00025 37.6 3.7 27 436-464 46-72 (231)
31 PRK13480 3'-5' exoribonuclease 56.2 34 0.00074 35.6 7.0 32 254-285 159-196 (314)
32 TIGR03319 YmdA_YtgF conserved 52.8 48 0.001 36.8 7.8 35 252-286 327-366 (514)
33 COG2316 Predicted hydrolase (H 50.1 31 0.00067 33.4 5.0 63 252-314 45-122 (212)
34 COG0466 Lon ATP-dependent Lon 50.0 1.7E+02 0.0036 34.3 11.5 93 333-439 152-244 (782)
35 PRK07152 nadD putative nicotin 49.6 18 0.0004 37.4 3.8 34 253-286 195-233 (342)
36 PRK01286 deoxyguanosinetriphos 48.8 19 0.00042 37.8 3.8 32 254-285 62-98 (336)
37 cd08780 Death_TRADD Death Doma 44.7 1.4E+02 0.0029 26.1 7.6 71 367-443 2-81 (90)
38 KOG1573 Aldehyde reductase [Ge 44.7 53 0.0012 31.7 5.7 52 233-284 75-127 (204)
39 PRK03007 deoxyguanosinetriphos 44.5 40 0.00086 36.6 5.5 58 229-286 40-107 (428)
40 KOG3220 Similar to bacterial d 43.1 77 0.0017 31.7 6.7 38 262-303 17-57 (225)
41 TIGR01399 hrcV type III secret 41.9 87 0.0019 36.1 7.8 147 262-420 454-623 (677)
42 TIGR03760 ICE_TraI_Pfluor inte 38.4 1.5E+02 0.0032 29.3 8.0 33 254-286 67-119 (218)
43 cd08318 Death_NMPP84 Death dom 37.7 1.6E+02 0.0035 24.7 7.0 74 365-443 5-79 (86)
44 PRK15337 type III secretion sy 37.2 1.1E+02 0.0025 35.2 7.8 145 263-420 465-632 (686)
45 PRK12720 secretion system appa 36.2 1.2E+02 0.0025 35.1 7.7 147 263-421 451-620 (675)
46 PRK05318 deoxyguanosinetriphos 36.0 29 0.00062 37.6 2.8 57 229-285 28-105 (432)
47 PRK12792 flhA flagellar biosyn 32.7 1.2E+02 0.0026 35.1 7.2 143 265-420 471-639 (694)
48 KOG2905 Transcription initiati 31.5 25 0.00054 35.6 1.4 48 394-442 184-232 (254)
49 TIGR01398 FlhA flagellar biosy 31.2 1.5E+02 0.0032 34.3 7.5 138 271-420 466-624 (678)
50 TIGR01353 dGTP_triPase deoxygu 31.1 49 0.0011 35.2 3.6 57 229-285 8-85 (381)
51 PRK05910 type III secretion sy 30.5 57 0.0012 36.9 4.0 88 333-420 431-524 (584)
52 PF09177 Syntaxin-6_N: Syntaxi 29.0 1.7E+02 0.0036 24.9 5.9 44 390-435 48-95 (97)
53 PF09824 ArsR: ArsR transcript 28.7 4.7E+02 0.01 25.1 9.1 108 258-375 3-111 (160)
54 PRK07764 DNA polymerase III su 28.3 8.8E+02 0.019 28.8 13.3 15 287-301 231-245 (824)
55 cd08313 Death_TNFR1 Death doma 28.1 1.2E+02 0.0026 25.5 4.7 54 383-442 16-72 (80)
56 PF14473 RD3: RD3 protein 27.9 2E+02 0.0043 26.7 6.5 45 394-439 77-127 (133)
57 PF06160 EzrA: Septation ring 27.7 9E+02 0.019 27.1 13.5 143 260-409 190-341 (560)
58 PF04108 APG17: Autophagy prot 27.7 7.9E+02 0.017 26.4 13.9 51 389-439 326-378 (412)
59 PF04753 Corona_NS2: Coronavir 27.1 32 0.00069 30.3 1.1 11 395-405 20-30 (109)
60 PF01121 CoaE: Dephospho-CoA k 25.9 40 0.00086 32.0 1.6 38 262-303 16-56 (180)
61 PRK10280 dipeptidyl carboxypep 25.9 3.7E+02 0.008 31.0 9.6 118 287-419 20-142 (681)
62 COG4339 Uncharacterized protei 25.3 4.6E+02 0.01 25.7 8.5 37 258-294 47-84 (208)
63 COG0232 Dgt dGTP triphosphohyd 24.6 1.1E+02 0.0024 33.3 4.8 57 229-285 38-109 (412)
64 PF14907 NTP_transf_5: Unchara 23.3 4.2E+02 0.0092 25.2 8.2 66 384-449 11-79 (249)
65 PF06744 DUF1215: Protein of u 23.0 87 0.0019 27.8 3.2 51 146-197 69-119 (125)
66 PLN02857 octaprenyl-diphosphat 22.6 2.6E+02 0.0057 30.3 7.2 28 277-304 175-205 (416)
67 PF08336 P4Ha_N: Prolyl 4-Hydr 22.4 2.2E+02 0.0049 25.4 5.7 45 232-277 33-77 (134)
68 TIGR00152 dephospho-CoA kinase 22.2 68 0.0015 29.8 2.4 39 262-304 15-57 (188)
69 COG2733 Predicted membrane pro 22.2 6E+02 0.013 27.8 9.6 77 366-442 120-201 (415)
70 COG5126 FRQ1 Ca2+-binding prot 22.0 4.6E+02 0.0099 24.9 7.9 100 185-297 49-152 (160)
71 PLN02422 dephospho-CoA kinase 21.1 69 0.0015 31.9 2.3 39 262-304 17-58 (232)
72 COG1578 Uncharacterized conser 20.5 5.7E+02 0.012 26.6 8.7 106 352-461 11-132 (285)
73 PRK10885 cca multifunctional t 20.3 1.1E+03 0.024 25.4 12.9 33 254-286 227-259 (409)
74 PRK01096 deoxyguanosinetriphos 20.1 73 0.0016 34.7 2.5 32 254-285 61-112 (440)
No 1
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=100.00 E-value=5.4e-69 Score=589.06 Aligned_cols=246 Identities=27% Similarity=0.433 Sum_probs=225.6
Q ss_pred HHHHHHHHhhCChhhHHHHHHHHHHHHHHhcCCccccCcchhHHHHHHHHHHHHhcCCHHHHHHHHhhhccccccCCHHH
Q 012390 215 KEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDY 294 (464)
Q Consensus 215 ~~Ll~~~~~~~~~~d~~~l~kAl~fA~~aH~GQ~RksGePYI~HpleVA~ILa~Lg~D~dtIaAALLHDvVEDT~vTlEe 294 (464)
++|+..+..+. ..+.+.|++|+.||.++|.| |++|+|||.||++||.||+++++|.++|+||||||++|||.+|.|+
T Consensus 18 ~~l~~~~~~~~-~~~~~~i~~A~~~a~~~H~g--r~sGepyi~Hpl~vA~iLa~~~~D~~ti~AaLLHD~vedt~~t~e~ 94 (743)
T PRK10872 18 DKWIASLGITS-QQSCERLAETWAYCLQQTQG--HPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDV 94 (743)
T ss_pred HHHHHHHHhhh-HHHHHHHHHHHHHHHHhccC--CCCCChhhhhHHHHHHHHHHcCCCHHHHHHHHhhhhHhcCCCCHHH
Confidence 35565555555 67888999999999999999 8999999999999999999999999999999999999999999999
Q ss_pred HHhhhcHHHHHHHHHhhcccccchHHhhccccchHHHHHHHHHHHhhcc-CchhhHhHHhhHHhhcccccCCCHHHHHHH
Q 012390 295 IFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPLCKRQRF 373 (464)
Q Consensus 295 I~e~FG~eVA~LVegVTKl~~l~~~~r~~~~~~~~~qaE~lRkmLLAma-D~RVVLIKLADRLhNMRtL~~lp~eKr~ri 373 (464)
|++.||++||.||+||||++.+....+.........|+|+||||||||+ |+||+||||||||||||||..++++||+++
T Consensus 95 i~~~FG~~Va~lVdgvtKl~~i~~~~~~~~~~~~~~qae~~RKmllam~~DiRVilIKLADRLhnmrTl~~~~~~kq~~i 174 (743)
T PRK10872 95 LRESVGKSIVNLIHGVRDMDAIRQLKATHNDSVSSEQVDNVRRMLLAMVEDFRCVVIKLAERIAHLREVKDAPEDERVLA 174 (743)
T ss_pred HHHHHCHHHHHHHHHHHHHHHhhhhhcccccchhHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhhcCChHHHHHH
Confidence 9999999999999999999988642211001123458999999999997 999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhChHHHHHHHHHHHHhhcChhhHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHCCCceeeeeeec
Q 012390 374 AKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECF--DEAMVTSAIEKLEQALKDKNISFLVLCGRH 451 (464)
Q Consensus 374 A~ETl~IYAPLA~RLGI~~lK~ELEDL~Fr~L~Pe~Y~~I~~~L~e~~--re~~I~~~~~~L~~~L~~~gI~~~~V~GR~ 451 (464)
|+||++|||||||||||++||||||||||+||+|+.|+.|+++|.+++ |+.+|+++++.|++.|++.||+++ |+||+
T Consensus 175 A~ETl~IyAPlA~RLGi~~iK~ELEDL~f~~l~P~~Y~~i~~~l~~~~~~r~~~i~~~~~~l~~~L~~~~i~~~-v~gR~ 253 (743)
T PRK10872 175 AKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPDEYKRIAKLLHERRIDREHYIEEFVGHLRAEMKAEGVKAE-VYGRP 253 (743)
T ss_pred HHHHHHHHHHHHHHhChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceE-EEeec
Confidence 999999999999999999999999999999999999999999998875 899999999999999999999996 99999
Q ss_pred cchhHHhHHhhcC
Q 012390 452 KSLYSIHCKMLKS 464 (464)
Q Consensus 452 KhiYSIy~KM~kK 464 (464)
||+||||+||++|
T Consensus 254 K~~ySI~~Km~~k 266 (743)
T PRK10872 254 KHIYSIWRKMQKK 266 (743)
T ss_pred CCHHHHHHHHHHc
Confidence 9999999999986
No 2
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=100.00 E-value=7.1e-68 Score=574.14 Aligned_cols=246 Identities=42% Similarity=0.611 Sum_probs=229.7
Q ss_pred HHHHHHHHHHHhhCChhhHHHHHHHHHHHHHHhcCCccccCcchhHHHHHHHHHHHHhcCCHHHHHHHHhhhccccccCC
Q 012390 212 TYAKEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLS 291 (464)
Q Consensus 212 ~~~~~Ll~~~~~~~~~~d~~~l~kAl~fA~~aH~GQ~RksGePYI~HpleVA~ILa~Lg~D~dtIaAALLHDvVEDT~vT 291 (464)
..+.++++.+..+.+..+.. +.+|+.||.++|.||+|++|+|||.||++||.||+++++|.++++||||||++|||.+|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~-l~kA~~~A~q~H~~q~r~SGePYi~Hpl~Va~iLael~~d~~tl~AaLLHD~vEDt~~t 85 (701)
T COG0317 7 VELEELLDSLATYLPPVDIE-LKKAWYYARQAHGGQTRKSGEPYISHPLEVAEILAELHMDMETLAAALLHDTIEDTPVT 85 (701)
T ss_pred ccHHHHHHHHHhcCChHHHH-HHHHHHHHHHHhHhhcCcCCCchhhCHHHHHHHHHHccCCHHHHHHHHccchHhcCCCC
Confidence 34567777777777766666 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcHHHHHHHHHhhcccccchHHhhccccchHHHHHHHHHHHhhcc-CchhhHhHHhhHHhhcccccCCCHHHH
Q 012390 292 YDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPLCKR 370 (464)
Q Consensus 292 lEeI~e~FG~eVA~LVegVTKl~~l~~~~r~~~~~~~~~qaE~lRkmLLAma-D~RVVLIKLADRLhNMRtL~~lp~eKr 370 (464)
.|+|++.||++|++||+||||+..+.++. .....|+|++||||++|. |+||++|||||||||||++..++++||
T Consensus 86 ~e~i~~~FG~eVa~LV~GvTkl~~i~~~~-----~~~~~qaen~rkmllAm~~DiRvilIKLADRLhNmrtl~~~~~ek~ 160 (701)
T COG0317 86 EELIEEIFGKEVAKLVEGVTKLKKIGQLS-----SEEELQAENLRKMLLAMVKDIRVVLIKLADRLHNLRTLKNLDEEKR 160 (701)
T ss_pred HHHHHHHHCHHHHHHHhhHHHhhhhhccC-----ccchhHHHHHHHHHHHhccCccEEEeehhhhhhhcccCccCCHHHH
Confidence 99999999999999999999999984222 123348999999999997 999999999999999999999889999
Q ss_pred HHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHhhcChhhHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHCCCceeeee
Q 012390 371 QRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECF--DEAMVTSAIEKLEQALKDKNISFLVLC 448 (464)
Q Consensus 371 ~riA~ETl~IYAPLA~RLGI~~lK~ELEDL~Fr~L~Pe~Y~~I~~~L~e~~--re~~I~~~~~~L~~~L~~~gI~~~~V~ 448 (464)
+++|+||++|||||||||||+++|||||||||+||+|++|+.|++.|.+++ |+.+|++++.+|++.|+++||+++ |+
T Consensus 161 ~riakETl~IyAPLA~RLGi~~iK~ELEDlsFr~l~P~~Y~~I~~~l~e~r~~re~~i~~~~~~l~~~L~~~gi~a~-v~ 239 (701)
T COG0317 161 RRIARETLDIYAPLAHRLGIGQIKWELEDLSFRYLHPDQYKRIAKLLDEKRLEREQYIENVVSELREELKAAGIKAE-VS 239 (701)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeEE-EE
Confidence 999999999999999999999999999999999999999999999999986 899999999999999999999995 99
Q ss_pred eeccchhHHhHHhhcC
Q 012390 449 GRHKSLYSIHCKMLKS 464 (464)
Q Consensus 449 GR~KhiYSIy~KM~kK 464 (464)
||+|||||||+||++|
T Consensus 240 gR~KhiYSIyrKM~~k 255 (701)
T COG0317 240 GRPKHIYSIYRKMQKK 255 (701)
T ss_pred cCCCcccHHHHHHHHc
Confidence 9999999999999987
No 3
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=100.00 E-value=9.5e-66 Score=563.03 Aligned_cols=244 Identities=39% Similarity=0.566 Sum_probs=230.0
Q ss_pred HHHHHHHHHhhCChhhHHHHHHHHHHHHHHhcCCccccCcchhHHHHHHHHHHHHhcCCHHHHHHHHhhhccccccCCHH
Q 012390 214 AKEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYD 293 (464)
Q Consensus 214 ~~~Ll~~~~~~~~~~d~~~l~kAl~fA~~aH~GQ~RksGePYI~HpleVA~ILa~Lg~D~dtIaAALLHDvVEDT~vTlE 293 (464)
+++|+.....+.+..+.+++.+|+.||.++|.||+|++|+||+.||++||.+|+++++|.++|+||||||++|||.+|.|
T Consensus 4 ~~~l~~~~~~~~~~~~~~~l~~A~~~A~~aH~gQ~rksGePYi~Hpl~VA~iLa~l~~D~~ti~AaLLHDvvEDt~~t~e 83 (702)
T PRK11092 4 FESLNQLIQTYLPEDQIKRLRQAYLVARDAHEGQTRSSGEPYITHPVAVACILAEMRLDYETLMAALLHDVIEDTPATYQ 83 (702)
T ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHhccCCcCCCCCcHHHHHHHHHHHHHHcCCCHHHHHHhcccchhhhCCCCHH
Confidence 45677777778888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcHHHHHHHHHhhcccccchHHhhccccchHHHHHHHHHHHhhcc-CchhhHhHHhhHHhhcccccCCCHHHHHH
Q 012390 294 YIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPLCKRQR 372 (464)
Q Consensus 294 eI~e~FG~eVA~LVegVTKl~~l~~~~r~~~~~~~~~qaE~lRkmLLAma-D~RVVLIKLADRLhNMRtL~~lp~eKr~r 372 (464)
+|++.||++|+.||++|||+..++...+ ...|+|++||||++|+ |+||++|||||||||||+|..+++++|++
T Consensus 84 ~i~~~FG~~Va~lV~gvTk~~~l~~~~~------~~~q~e~~rkmllam~~DiRVvlIKLADRlhNmrtL~~~~~ek~~~ 157 (702)
T PRK11092 84 DMEQLFGKSVAELVEGVSKLDKLKFRDK------KEAQAENFRKMIMAMVQDIRVILIKLADRTHNMRTLGSLRPDKRRR 157 (702)
T ss_pred HHHHHHCHHHHHHHHHHHhhccccccch------hhHHHHHHHHHHHHhcCCCceEEEEHHHHHhhHHHHHhcCccHHHH
Confidence 9999999999999999999988754211 2357999999999997 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhChHHHHHHHHHHHHhhcChhhHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHCCCceeeeeee
Q 012390 373 FAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECF--DEAMVTSAIEKLEQALKDKNISFLVLCGR 450 (464)
Q Consensus 373 iA~ETl~IYAPLA~RLGI~~lK~ELEDL~Fr~L~Pe~Y~~I~~~L~e~~--re~~I~~~~~~L~~~L~~~gI~~~~V~GR 450 (464)
+|+||++|||||||||||++||||||||||+||+|++|+.|+++|.+++ |+.+|+++++.|++.|+++||+++ |+||
T Consensus 158 iA~ETl~iyaPlA~rlGi~~ik~eLedL~f~~l~P~~y~~i~~~~~~~~~~r~~~i~~~~~~l~~~l~~~~i~~~-i~~R 236 (702)
T PRK11092 158 IARETLEIYSPLAHRLGIHHIKTELEELGFEALYPNRYRVIKEVVKAARGNRKEMIQKILSEIEGRLQEAGIPCR-VSGR 236 (702)
T ss_pred HHHHHHHHHHHHHHHhChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcEE-EEec
Confidence 9999999999999999999999999999999999999999999999876 899999999999999999999996 9999
Q ss_pred ccchhHHhHHhhcC
Q 012390 451 HKSLYSIHCKMLKS 464 (464)
Q Consensus 451 ~KhiYSIy~KM~kK 464 (464)
+||+||||+||++|
T Consensus 237 ~K~~ySI~~Km~~k 250 (702)
T PRK11092 237 EKHLYSIYCKMVLK 250 (702)
T ss_pred cCCHHHHHHHHHHc
Confidence 99999999999976
No 4
>KOG1157 consensus Predicted guanosine polyphosphate pyrophosphohydrolase/synthase [Signal transduction mechanisms]
Probab=100.00 E-value=4.9e-64 Score=510.10 Aligned_cols=296 Identities=61% Similarity=0.875 Sum_probs=276.7
Q ss_pred CCCcccccccccccccccccccCcCcchhhHhhhhhcccccCCCCCcccccCCcccccCchhHHHHH-Hhhhcccccccc
Q 012390 130 SPPIRTAREKADVNVNFHTFFKGSSGLFNGFVRNALGSCVDYDSSSFRVHNGDAVLNVGSSAALIDE-LTFNMEDNIVEG 208 (464)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~ 208 (464)
||||++.|+|+.+ =||||||.+.|+||||+.. +.|.+| +.|+|+ .+
T Consensus 6 ~~pm~i~r~r~~~-------------~~~~~~rKae~~~v~~E~~----------------s~l~~ea~~~~me----ve 52 (543)
T KOG1157|consen 6 SPPMRISRDRNLD-------------GFNGFVRKAEGSCVDYEMD----------------SVLVDEALGFKME----VE 52 (543)
T ss_pred CCCCCCccccchh-------------hhcccCccccccccccccc----------------ccccccccCCcee----ee
Confidence 9999999999862 1999999999999999922 235677 888884 45
Q ss_pred cHHHHHHHHHHHHHhhCChhhHHHHHHHHHHHHHHhcCCccccC-cchhHHHHHHHHHHHHhcCCHHHHHHHHhhhcccc
Q 012390 209 NLETYAKEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASG-DPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDD 287 (464)
Q Consensus 209 ~~~~~~~~Ll~~~~~~~~~~d~~~l~kAl~fA~~aH~GQ~RksG-ePYI~HpleVA~ILa~Lg~D~dtIaAALLHDvVED 287 (464)
.+.++.+++++..+.....++.+++.||+.+|+.+|++|+|+++ +||++||+.+|.||+.+++|+.+++||+|||||||
T Consensus 53 ~~~~~~r~~eR~~~~~~~t~~s~lv~KAl~~Aa~~HR~Q~Rad~~rPY~nH~i~ta~iLAd~~~ds~Vv~AaiLHDVVDD 132 (543)
T KOG1157|consen 53 LVGPYARDLERRAQLWHKTFSSELVIKALYEAAKAHRGQMRADDDRPYLNHCIETAMILADIGADSTVVVAAILHDVVDD 132 (543)
T ss_pred ehhhhhhhhhhhhhhhhhcCcHHHHHHHHHHHHHHHhcccccCCCCchhhhHHHHHHHHHHhhcchHHHHHHHHHHHHhh
Confidence 77889999999999999999999999999999999999999965 59999999999999999999999999999999999
Q ss_pred ccCCHHHHHhhhcHHHHHHHHHhhcccccchHHhhccccchHHHHHHHHHHHhhccCchhhHhHHhhHHhhcccccCCCH
Q 012390 288 AFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPL 367 (464)
Q Consensus 288 T~vTlEeI~e~FG~eVA~LVegVTKl~~l~~~~r~~~~~~~~~qaE~lRkmLLAmaD~RVVLIKLADRLhNMRtL~~lp~ 367 (464)
+.+++++|.+.||.+||+||++||+++.++++.|.+. .|.+.++ |++++++.||+||||||+|||||+|..+||
T Consensus 133 t~~S~eeI~~~FG~gVa~LV~EvtddKnL~K~eRk~l-----~qiet~~-~fyak~s~RAvLIkLADKLdNMRdL~~lpP 206 (543)
T KOG1157|consen 133 TFMSYEEILRHFGTGVADLVEEVTDDKNLSKLERKNL-----TQIETVE-MFYAKASARAVLIKLADKLDNMRDLYALPP 206 (543)
T ss_pred ccCCHHHHHHHhCccHHHHHHHHhcccchhHHHHHHH-----HHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhhhhccCc
Confidence 9999999999999999999999999999999887653 3677776 678888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHhhcChhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHCCCceeee
Q 012390 368 CKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFDEAMVTSAIEKLEQALKDKNISFLVL 447 (464)
Q Consensus 368 eKr~riA~ETl~IYAPLA~RLGI~~lK~ELEDL~Fr~L~Pe~Y~~I~~~L~e~~re~~I~~~~~~L~~~L~~~gI~~~~V 447 (464)
-+|+++++|++.||+|+|+++|++.++.+||+|||+|++|.+|.++..+|+..+++++|...++.|++.|.++||.++.|
T Consensus 207 vgwq~~r~e~lfIwapla~~~g~gtn~~lle~Ldf~~l~p~~~~~m~s~l~~~~~~~mi~~~~~~l~~~l~~a~i~~~~i 286 (543)
T KOG1157|consen 207 VGWQRFRKETLFIWAPLANRLGIGTNKVLLENLDFKHLFPCQHIEMSSMLEDSFDEAMITSAIEKLEQALKKAGISYHVI 286 (543)
T ss_pred chhHHHHHHHHHHhhHHHHHhcccchHHHHhhhhHHHhCchhHHHHHHHHhcccchHHHHHHHHHHHHHHHhccceeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998889
Q ss_pred eeeccchhHHhHHhhcC
Q 012390 448 CGRHKSLYSIHCKMLKS 464 (464)
Q Consensus 448 ~GR~KhiYSIy~KM~kK 464 (464)
+||.|++||||+||.||
T Consensus 287 ~gr~ks~ysi~~kmlk~ 303 (543)
T KOG1157|consen 287 KGRHKSLYSIYKKMLKK 303 (543)
T ss_pred ecchhhHHHHHHHHHhc
Confidence 99999999999999986
No 5
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=100.00 E-value=1.1e-61 Score=530.84 Aligned_cols=222 Identities=45% Similarity=0.673 Sum_probs=211.8
Q ss_pred HHHHHHHHhcCCccccCcchhHHHHHHHHHHHHhcCCHHHHHHHHhhhccccccCCHHHHHhhhcHHHHHHHHHhhcccc
Q 012390 236 AFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQ 315 (464)
Q Consensus 236 Al~fA~~aH~GQ~RksGePYI~HpleVA~ILa~Lg~D~dtIaAALLHDvVEDT~vTlEeI~e~FG~eVA~LVegVTKl~~ 315 (464)
|+.||.++|.||+|++|+||+.||++||.+|+++++|+++++||||||++|||++|.++|++.||++|++||++|||+..
T Consensus 1 A~~~A~~aH~gQ~rksg~PYi~Hpl~VA~iL~~~~~D~~~i~AaLLHDvvEDt~~t~e~i~~~FG~~Va~lV~~vTk~~~ 80 (683)
T TIGR00691 1 ALEIAKDLHEGQKRKSGEPYIIHPLAVALILAELGMDEETVCAALLHDVIEDTPVTEEEIEEEFGEEVAELVDGVTKITK 80 (683)
T ss_pred CHHHHHHhcccCcCCCCCcHHHHHHHHHHHHHHhCCCHHHHHHHhccchHhcCCCCHHHHHHHHCHHHHHHHHHHHHhcc
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cchHHhhccccchHHHHHHHHHHHhhcc-CchhhHhHHhhHHhhcccccCCCHHHHHHHHHHHHHHHHHHHhhhChHHHH
Q 012390 316 LSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWK 394 (464)
Q Consensus 316 l~~~~r~~~~~~~~~qaE~lRkmLLAma-D~RVVLIKLADRLhNMRtL~~lp~eKr~riA~ETl~IYAPLA~RLGI~~lK 394 (464)
+....+ ...|+|++|+||++|+ |+||++|||||||||||++..+++++|+++|+||++|||||||||||++||
T Consensus 81 ~~~~~~------~~~q~e~~rkmlla~~~d~rvvlVKLADrlhNmrtl~~~~~~k~~~iA~Et~~iyaPlA~rLG~~~ik 154 (683)
T TIGR00691 81 LKKKSR------QELQAENFRKMILAMAQDIRVIVIKLADRLHNMRTLDFLPPEKQKRIAKETLEIYAPLAHRLGMSSIK 154 (683)
T ss_pred cccchh------hHHHHHHHHHHHHhhcCCcceEeeeHHHHHhHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhChHHHH
Confidence 764222 2357899999999997 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcChhhHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHCCCceeeeeeeccchhHHhHHhhcC
Q 012390 395 VQLENLCFKHLNPDQHTELSSKLVECF--DEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKS 464 (464)
Q Consensus 395 ~ELEDL~Fr~L~Pe~Y~~I~~~L~e~~--re~~I~~~~~~L~~~L~~~gI~~~~V~GR~KhiYSIy~KM~kK 464 (464)
||||||||+||+|++|+.|++.|.+++ ++.+|+.+++.|++.|.+.||+++ |+||+||+||||+||++|
T Consensus 155 ~eLedl~f~~l~p~~y~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~i~~~-i~~R~K~~~Si~~Km~~k 225 (683)
T TIGR00691 155 TELEDLSFKYLYPKEYENIKSLVNEQKVNRENKLEKFKSELEKRLEDSGIEAE-LEGRSKHLYSIYQKMTRK 225 (683)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceE-EEeeeCCHHHHHHHHHhc
Confidence 999999999999999999999999875 789999999999999999999995 999999999999999975
No 6
>PF13328 HD_4: HD domain; PDB: 3NR1_B.
Probab=100.00 E-value=5.9e-41 Score=304.04 Aligned_cols=152 Identities=49% Similarity=0.727 Sum_probs=98.1
Q ss_pred HHHHHHHHhcCCccccCcchhHHHHHHHHHHHHhcCCHHHHHHHHhhhccccccCCHHHHHhhhcHHHHHHHHHhhcccc
Q 012390 236 AFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQ 315 (464)
Q Consensus 236 Al~fA~~aH~GQ~RksGePYI~HpleVA~ILa~Lg~D~dtIaAALLHDvVEDT~vTlEeI~e~FG~eVA~LVegVTKl~~ 315 (464)
|+.||.++|.||++++|+||+.||++||.+|.++|+|+++++||||||++||+..+ ++|++.||++|+++|.++|++..
T Consensus 1 A~~~A~~~h~~~~~~~g~py~~H~~~va~~l~~~~~d~~~i~aalLHD~ied~~~~-~~i~~~fg~~V~~lV~~lt~~~~ 79 (153)
T PF13328_consen 1 ALAFAAEAHAGQRRKSGEPYISHPLEVAEILAELGLDEETIAAALLHDVIEDTETT-EDIEERFGEDVADLVDALTKIKK 79 (153)
T ss_dssp HHHHHHHHTTT-B-ST--BTTHHHHHHHHHHHTS---HHHHHHHHHTTHHHHSS---HHHHHHHHHHHHHHHHHT---TT
T ss_pred CHHHHHHHHhcccCCCCCcHHHHHHHHHHHHHHcCCCHHHHhhheeecHHHhcCCH-HHHHHccChHHHHHHHHHHhccc
Confidence 78999999999999999999999999999999999999999999999999999656 99999999999999999999998
Q ss_pred cchHHhhccccchHHHHHHHHHHHhhcc-CchhhHhHHhhHHhhcccccCCCHHHHHHHHHHHHHHHHHHHhhhChH
Q 012390 316 LSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGIS 391 (464)
Q Consensus 316 l~~~~r~~~~~~~~~qaE~lRkmLLAma-D~RVVLIKLADRLhNMRtL~~lp~eKr~riA~ETl~IYAPLA~RLGI~ 391 (464)
+..... ......+.+++|+||+++. |+||++|||||||||||++...++++++++|+||+++|+|||||||||
T Consensus 80 ~~~~~~---~~~~~~~~~~~r~ml~~~~~d~~~~lIKlaDrl~nl~~~~~~~~~~~~~~a~Et~~i~apLA~rLGiw 153 (153)
T PF13328_consen 80 LSKKPW---EERSEEYAERLRRMLLAMSEDVRAVLIKLADRLHNLRTIKYLPPEKQRRYARETLDIYAPLAHRLGIW 153 (153)
T ss_dssp S-HH------HHHHHHHHHGGG-----S-H-HHHHHHHHHHHHHHHHHHH---TT----------------------
T ss_pred cccccc---hhhHHHHHHHhhhhccccCCchHHHHHHHHHHHHhhccHHHCCHHHhhhhhhccccccccccccccCC
Confidence 876511 1123567899999999996 999999999999999999999999999999999999999999999998
No 7
>TIGR03276 Phn-HD phosphonate degradation operons associated HDIG domain protein. This small clade of proteins are found adjacent to other genes implicated in the catabolism of phosphonates. They are members of the TIGR00277 domain family and contain a series of five invariant histidines (the domain in general has only four).
Probab=98.34 E-value=1.1e-06 Score=83.37 Aligned_cols=71 Identities=28% Similarity=0.432 Sum_probs=57.3
Q ss_pred hcCCccccCc--chhHHHHHHHHHHHHhcCCHHHHHHHHhhhc---ccccc--------------CCHHHHHhhhcHHHH
Q 012390 244 HRGQMRASGD--PYLLHCVETAMLLAAIGANSTVVAAGLLHDT---LDDAF--------------LSYDYIFRTFGAGVA 304 (464)
Q Consensus 244 H~GQ~RksGe--PYI~HpleVA~ILa~Lg~D~dtIaAALLHDv---VEDT~--------------vTlEeI~e~FG~eVA 304 (464)
+.|+....|+ +++.|++++|.+...-|.|++.|+||||||+ ++|.. +..+.|+..||++|+
T Consensus 13 ~~g~~~y~Ge~Vs~leH~LQ~A~lA~~~Gad~elvvAALLHDIGhll~~~~~~~~~~g~~~~He~iga~~Lr~~F~~~V~ 92 (179)
T TIGR03276 13 EHGARQYGGEAVSQLEHALQCAQLAEAAGADDELIVAAFLHDIGHLLADEGATPMGRGGDDHHEELAADYLRELFSPSVT 92 (179)
T ss_pred hcCccccCCCCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHhcchhhhcccccccccCCCccHHHHHHHHHHHHcCHHHH
Confidence 3444455665 6899999999988889999999999999998 77543 225788999999999
Q ss_pred HHHHHhhccc
Q 012390 305 DLVEGVSKLS 314 (464)
Q Consensus 305 ~LVegVTKl~ 314 (464)
.+|..-..-+
T Consensus 93 ~lV~~Hv~aK 102 (179)
T TIGR03276 93 EPIRLHVQAK 102 (179)
T ss_pred HHHHHHHHHH
Confidence 9999877544
No 8
>smart00471 HDc Metal dependent phosphohydrolases with conserved 'HD' motif. Includes eukaryotic cyclic nucleotide phosphodiesterases (PDEc). This profile/HMM does not detect HD homologues in bacterial glycine aminoacyl-tRNA synthetases (beta subunit).
Probab=95.79 E-value=0.021 Score=46.72 Aligned_cols=37 Identities=27% Similarity=0.272 Sum_probs=28.9
Q ss_pred CcchhHHHHHHHHHHHHhc------CCHHHHHHHHhhhccccc
Q 012390 252 GDPYLLHCVETAMLLAAIG------ANSTVVAAGLLHDTLDDA 288 (464)
Q Consensus 252 GePYI~HpleVA~ILa~Lg------~D~dtIaAALLHDvVEDT 288 (464)
+++.+.|.+.|+.+...+. .......||||||+-+..
T Consensus 2 ~~~~~~H~~~v~~~~~~l~~~~~~~~~~~~~~a~LlHDig~~~ 44 (124)
T smart00471 2 DYHVFEHSLRVAQLAAALAEELGLLDIELLLLAALLHDIGKPG 44 (124)
T ss_pred CchHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHcccCcc
Confidence 4678899999998877554 345678999999997754
No 9
>PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity []. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria, archaea and eukaryotes. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; GO: 0008081 phosphoric diester hydrolase activity, 0046872 metal ion binding; PDB: 2CQZ_A 2Q14_C 3CCG_A 2PAU_A 2PAQ_B 2PAR_B 3BG2_A 3NQW_A 2QGS_B 2DQB_D ....
Probab=94.98 E-value=0.043 Score=45.62 Aligned_cols=33 Identities=24% Similarity=0.268 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHhcC------CH-HHHHHHHhhhccccc
Q 012390 256 LLHCVETAMLLAAIGA------NS-TVVAAGLLHDTLDDA 288 (464)
Q Consensus 256 I~HpleVA~ILa~Lg~------D~-dtIaAALLHDvVEDT 288 (464)
+.|.+.|+.+...+.. +. -.++||||||+=.-.
T Consensus 2 ~~Hs~~V~~~a~~l~~~~~~~~~~~~l~~aaLlHDiGk~~ 41 (122)
T PF01966_consen 2 FEHSLRVAELAERLADRLGLEEDRELLRIAALLHDIGKIP 41 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTHHS
T ss_pred hhHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhcCCCC
Confidence 6799999988776532 22 266899999986544
No 10
>TIGR03401 cyanamide_fam HD domain protein, cyanamide hydratase family. Members of this protein family are known, so far, in the Ascomycota, a branch of the Fungi, and contain an HD domain (pfam01966), found typically in various metal-dependent phosphohydrolases. The only characterized member of this family, from the soil fungus Myrothecium verrucaria, is cyanamide hydratase (EC 4.2.1.69), a zinc-containing homohexamer that adds water to the fertilizer cyanamide (NCNH2), a nitrile compound, to produce urea (NH2-CO-NH2). Homologs are likely to be nitrile hydratases.
Probab=94.42 E-value=0.47 Score=46.88 Aligned_cols=128 Identities=14% Similarity=0.071 Sum_probs=70.4
Q ss_pred ChhhHHHHHHHHHHHHHHhcCCccccCcchhHHHHHHHHHHHH--------hcCCHHHH-HHHHhhhcccc-ccCCHHHH
Q 012390 226 KIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAA--------IGANSTVV-AAGLLHDTLDD-AFLSYDYI 295 (464)
Q Consensus 226 ~~~d~~~l~kAl~fA~~aH~GQ~RksGePYI~HpleVA~ILa~--------Lg~D~dtI-aAALLHDvVED-T~vTlEeI 295 (464)
++-|..++++|.+++.+... ..-+.|.+.|...... ++.|.+++ +||||||+..- .......+
T Consensus 34 ~iPdt~l~~~a~~~~~~~l~-------~~~~~Hs~RV~~~a~~ia~~e~~~~~~D~evl~lAALLHDIG~~~~~~~~~~~ 106 (228)
T TIGR03401 34 PLPDTPLVKFAQEYAKARLP-------PETYNHSLRVYYYGLAIARDQFPEWDLSDETWFLTCLLHDIGTTDENMTATKM 106 (228)
T ss_pred CCCChHHHHHHHHHHHhhCC-------HhhhHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHhhccccccCCcccC
Confidence 33477888899999877643 2457899998643332 25776544 79999998652 21111122
Q ss_pred H-hhhcHHHH-HHHHHhhcccccchHHhhccccchHHHHHHHHHHHhhc------c--CchhhHhHHhhHHhhccc-ccC
Q 012390 296 F-RTFGAGVA-DLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAM------A--DARAVLIKLADRLHNMMT-LDA 364 (464)
Q Consensus 296 ~-e~FG~eVA-~LVegVTKl~~l~~~~r~~~~~~~~~qaE~lRkmLLAm------a--D~RVVLIKLADRLhNMRt-L~~ 364 (464)
. +..|...| +++...+ ..+. .+.+.+...+... . ++-+.||..||+++++-. ...
T Consensus 107 ~fe~~ga~~A~~~L~~~~---G~~~-----------~~~~~V~~aI~~H~~~~~~~~~~~e~~lvq~Ad~lDa~Ga~~~~ 172 (228)
T TIGR03401 107 SFEFYGGILALDVLKEQT---GANQ-----------DQAEAVAEAIIRHQDLGVDGTITTLGQLLQLATIFDNVGANTDL 172 (228)
T ss_pred CHHHHHHHHHHHHHHHCC---CCCH-----------HHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHhHccCChhh
Confidence 1 22344333 3333222 2221 1122222221111 1 346889999999999853 556
Q ss_pred CCHHHHHHHH
Q 012390 365 LPLCKRQRFA 374 (464)
Q Consensus 365 lp~eKr~riA 374 (464)
++++.+..+.
T Consensus 173 ~~~~~~~~v~ 182 (228)
T TIGR03401 173 VHPDTVDAVN 182 (228)
T ss_pred CCHHHHHHHH
Confidence 7777665543
No 11
>PRK12703 tRNA 2'-O-methylase; Reviewed
Probab=93.88 E-value=0.79 Score=48.01 Aligned_cols=149 Identities=16% Similarity=0.104 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHhcCCccccCcchhHHHHHHHHHHHH----hcCCHHH-HHHHHhhhcccccc-------CCHHHHHh-h
Q 012390 232 FVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAA----IGANSTV-VAAGLLHDTLDDAF-------LSYDYIFR-T 298 (464)
Q Consensus 232 ~l~kAl~fA~~aH~GQ~RksGePYI~HpleVA~ILa~----Lg~D~dt-IaAALLHDvVEDT~-------vTlEeI~e-~ 298 (464)
..++++++-.+.+. .+..+.|.+.|+.+... ++.|.+. ++||||||+-.... ...+-|++ .
T Consensus 171 ~~ee~l~Ll~k~~~------~e~l~~Hs~rVa~lA~~LA~~~~~D~~ll~aAALLHDIGK~k~~~~~H~~~Ga~iL~e~G 244 (339)
T PRK12703 171 DEDQCLDLLKKYGA------SDLLIRHVKTVYKLAMRIADCINADRRLVAAGALLHDIGRTKTNGIDHAVAGAEILRKEN 244 (339)
T ss_pred CHHHHHHHHHHcCC------ChHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHCC
Confidence 34556666444422 23357999999876443 4667654 46799999965322 12233433 2
Q ss_pred hcHHHHHHHHHhhcccccchHHhhccccchHHHHHHHHHHHhhccCchhhHhHHhhHHhhcccccCCCHHHHHHHHHHHH
Q 012390 299 FGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETL 378 (464)
Q Consensus 299 FG~eVA~LVegVTKl~~l~~~~r~~~~~~~~~qaE~lRkmLLAmaD~RVVLIKLADRLhNMRtL~~lp~eKr~riA~ETl 378 (464)
|.++|+++|+.-..- .++.... +...+..-...-...-..+|-.||+|..... ..+.+.+.+-.++.
T Consensus 245 ~~e~i~~iIe~H~g~-G~~~~~~---------~~~gL~~~~~~P~TLEakIV~dADrL~~~~r--~v~~e~~~~k~~~~- 311 (339)
T PRK12703 245 IDDRVVSIVERHIGA-GITSEEA---------QKLGLPVKDYVPETIEEMIVAHADNLFAGDK--RLNLKQVMDKYRKK- 311 (339)
T ss_pred CCHHHHHHHHHHhcc-CCCcchh---------hccCCccccCCCCCHHHHHHHHHHHHhcCCC--cCCHHHHHHHHHhh-
Confidence 567888888665421 1110000 0000000000001345789999999977653 34444432222221
Q ss_pred HHHHHHHhhhChHHHHHHHHHHHH
Q 012390 379 EIFVPLANRLGISTWKVQLENLCF 402 (464)
Q Consensus 379 ~IYAPLA~RLGI~~lK~ELEDL~F 402 (464)
-++..++| +..|..|||.++=
T Consensus 312 -~~~~~~~R--~~~l~~~~~~~~g 332 (339)
T PRK12703 312 -GLHDAAER--IKKLHEELSSICG 332 (339)
T ss_pred -hhhHHHHH--HHHHHHHHHHHhC
Confidence 12334455 5566677776654
No 12
>cd00077 HDc Metal dependent phosphohydrolases with conserved 'HD' motif
Probab=93.60 E-value=0.13 Score=42.61 Aligned_cols=35 Identities=23% Similarity=0.216 Sum_probs=26.2
Q ss_pred chhHHHHHHHHHHHHhcC--------CHHHHHHHHhhhccccc
Q 012390 254 PYLLHCVETAMLLAAIGA--------NSTVVAAGLLHDTLDDA 288 (464)
Q Consensus 254 PYI~HpleVA~ILa~Lg~--------D~dtIaAALLHDvVEDT 288 (464)
+...|.+.|+.+...+.. .....+||||||+-+..
T Consensus 2 ~~~~Hs~~v~~~~~~~~~~~~~~~~~~~~l~~aaLlHDig~~~ 44 (145)
T cd00077 2 HRFEHSLRVAQLARRLAEELGLSEEDIELLRLAALLHDIGKPG 44 (145)
T ss_pred chHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHhcCCcc
Confidence 457899999887775432 35677899999998754
No 13
>TIGR00295 conserved hypothetical protein TIGR00295. This set of orthologs is narrowly defined, comprising proteins found in three Archaea but not in Pyrococcus horikoshii. The closest homologs are other archaeal proteins that appear to be represent distinct orthologous clusters.
Probab=89.43 E-value=2.2 Score=39.76 Aligned_cols=57 Identities=18% Similarity=0.253 Sum_probs=34.6
Q ss_pred cchhHHHHHHHHHHHH----hc-----CCH-HHHHHHHhhhcccccc-------CCHHHHHh-hhcHHHHHHHHH
Q 012390 253 DPYLLHCVETAMLLAA----IG-----ANS-TVVAAGLLHDTLDDAF-------LSYDYIFR-TFGAGVADLVEG 309 (464)
Q Consensus 253 ePYI~HpleVA~ILa~----Lg-----~D~-dtIaAALLHDvVEDT~-------vTlEeI~e-~FG~eVA~LVeg 309 (464)
...+.|.+.|+.+... ++ .|. ...+||||||+-.... ...+-+++ .|.++|+.+|..
T Consensus 12 ~~~~~Hs~~Va~~A~~ia~~~~~~~~~~d~~~l~~aaLLHDIGK~~~~~~~H~~~G~~iL~~~g~~~~i~~iI~~ 86 (164)
T TIGR00295 12 ESVRRHCLAVARVAMELAENIRKKGHEVDMDLVLKGALLHDIGRARTHGFEHFVKGAEILRKEGVDEKIVRIAER 86 (164)
T ss_pred ccHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4567899999875432 34 453 5668999999865321 11222332 245778888764
No 14
>PRK10119 putative hydrolase; Provisional
Probab=85.23 E-value=4.5 Score=40.21 Aligned_cols=52 Identities=13% Similarity=0.070 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhcCCccccCcchhHHHHHHHHHHHH----hcCCHH-HHHHHHhhhccc
Q 012390 232 FVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAA----IGANST-VVAAGLLHDTLD 286 (464)
Q Consensus 232 ~l~kAl~fA~~aH~GQ~RksGePYI~HpleVA~ILa~----Lg~D~d-tIaAALLHDvVE 286 (464)
.+.++.+|..+...+. .+| .-+.|..+|...... -+.|.. +.+||||||+..
T Consensus 6 ~~~~~~~~v~~~l~~~--~~~-HD~~Hi~RV~~lA~~Ia~~e~~D~~vv~lAAlLHDv~d 62 (231)
T PRK10119 6 WQAQFENWLKNHHQHQ--DAA-HDICHFRRVWATAQKLAADDDVDMLVVLTACYFHDIVS 62 (231)
T ss_pred HHHHHHHHHHHHhhcC--CCc-cChHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhcch
Confidence 4455566666654432 222 235677776543333 356654 558999999975
No 15
>COG1418 Predicted HD superfamily hydrolase [General function prediction only]
Probab=84.92 E-value=1.5 Score=43.15 Aligned_cols=39 Identities=28% Similarity=0.302 Sum_probs=30.1
Q ss_pred cCcchhHHHHHHHHHHH----HhcCCHHHH-HHHHhhhcccccc
Q 012390 251 SGDPYLLHCVETAMLLA----AIGANSTVV-AAGLLHDTLDDAF 289 (464)
Q Consensus 251 sGePYI~HpleVA~ILa----~Lg~D~dtI-aAALLHDvVEDT~ 289 (464)
+|..-+.|+++||.+.. +.|.|.+.+ .||||||+..-..
T Consensus 33 ~~~~~l~H~~~Va~lA~~Ia~~~g~D~~l~~~aaLLHDIg~~~~ 76 (222)
T COG1418 33 YGQHVLEHSLRVAYLAYRIAEEEGVDPDLALRAALLHDIGKAID 76 (222)
T ss_pred ccchHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhccccc
Confidence 67888999999987554 357887655 6889999986543
No 16
>COG4341 Predicted HD phosphohydrolase [General function prediction only]
Probab=84.20 E-value=1.1 Score=42.79 Aligned_cols=35 Identities=46% Similarity=0.654 Sum_probs=29.7
Q ss_pred ccCcch--hHHHHHHHHHHHHhcCCHHHHHHHHhhhc
Q 012390 250 ASGDPY--LLHCVETAMLLAAIGANSTVVAAGLLHDT 284 (464)
Q Consensus 250 ksGePY--I~HpleVA~ILa~Lg~D~dtIaAALLHDv 284 (464)
.+|+|. ..|.++.|.+...-|.+.+.|+||||||+
T Consensus 24 y~ge~VTq~eHaLQ~AtlAerdGa~~~lVaaALLHDi 60 (186)
T COG4341 24 YSGEPVTQLEHALQCATLAERDGADTALVAAALLHDI 60 (186)
T ss_pred cccCcchhhhhHHHHhHHHHhcCCcHHHHHHHHHHhH
Confidence 467774 68999998766678999999999999996
No 17
>PRK03826 5'-nucleotidase; Provisional
Probab=79.36 E-value=6.1 Score=38.25 Aligned_cols=35 Identities=20% Similarity=0.326 Sum_probs=24.6
Q ss_pred cchhHHHHHHHHHHHHh----------cCCH-HHHHHHHhhhcccc
Q 012390 253 DPYLLHCVETAMLLAAI----------GANS-TVVAAGLLHDTLDD 287 (464)
Q Consensus 253 ePYI~HpleVA~ILa~L----------g~D~-dtIaAALLHDvVED 287 (464)
+..-.|.+.||.+...+ +.|. .++..||+||+.|-
T Consensus 27 EsVAeHs~~vAliA~~La~i~~~~~~~~vd~~rv~~~aL~HDl~E~ 72 (195)
T PRK03826 27 ENVSEHSLQVAMVAHALAVIKNRKFGGNLNAERIALLAMYHDASEV 72 (195)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcchHHH
Confidence 45678999998764322 2454 45668999999885
No 18
>TIGR00277 HDIG uncharacterized domain HDIG. This domain is found in a few known nucleotidyltransferes and in a large number of uncharacterized proteins. It contains four widely separated His residues, the second of which is part of an invariant dipeptide His-Asp in a region matched approximately by the motif HDIG.
Probab=77.15 E-value=3.4 Score=32.06 Aligned_cols=34 Identities=32% Similarity=0.391 Sum_probs=23.4
Q ss_pred cchhHHHHHHHHHHHH----hcCCH-HHHHHHHhhhccc
Q 012390 253 DPYLLHCVETAMLLAA----IGANS-TVVAAGLLHDTLD 286 (464)
Q Consensus 253 ePYI~HpleVA~ILa~----Lg~D~-dtIaAALLHDvVE 286 (464)
.+-..|.+.|+..... +++|. ....||||||+=.
T Consensus 3 ~~~~~H~~~v~~~a~~la~~~~~~~~~l~~AalLHDiG~ 41 (80)
T TIGR00277 3 QNVLQHSLEVAKLAEALARELGLDVELARRGALLHDIGK 41 (80)
T ss_pred chHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHccCC
Confidence 3456788888776553 45665 4667999999744
No 19
>PF12917 HD_2: HD containing hydrolase-like enzyme ; PDB: 3MZO_B.
Probab=75.83 E-value=9.3 Score=37.85 Aligned_cols=101 Identities=14% Similarity=0.145 Sum_probs=51.3
Q ss_pred cchhHHHHHHHHHHHHh-------c--CCHH-HHHHHHhhhccccccCCHHHHH---hhhcHHHHHHHHHhhcccccchH
Q 012390 253 DPYLLHCVETAMLLAAI-------G--ANST-VVAAGLLHDTLDDAFLSYDYIF---RTFGAGVADLVEGVSKLSQLSKL 319 (464)
Q Consensus 253 ePYI~HpleVA~ILa~L-------g--~D~d-tIaAALLHDvVEDT~vTlEeI~---e~FG~eVA~LVegVTKl~~l~~~ 319 (464)
+..-.|.+.||.+..-+ | .|.. ...-||.||..|-. | -||. +.+.++...++..|.+...-..+
T Consensus 28 ~nVA~HSf~Va~iA~~Lg~iee~~G~~vd~~~lyekAL~HD~~E~F--t-GDI~TPVKy~tPelr~~~~~VE~~m~~~~i 104 (215)
T PF12917_consen 28 HNVAEHSFKVAMIAQFLGDIEEQFGNEVDWKELYEKALNHDYPEIF--T-GDIKTPVKYATPELREMLAQVEEEMTENFI 104 (215)
T ss_dssp -BHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHTTGGGGT--S-----S-SSSS-HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCCccCHHHHHHHHhccccHHHH--c-CCCCCcccccCHHHHHHHHHHHHHHHHHHH
Confidence 45668999888765533 3 3543 44789999999863 1 1111 22444555555544442111111
Q ss_pred HhhccccchHHHHHHHHHHHhhccC--chhhHhHHhhHHhhcc
Q 012390 320 ARENNTASKTVEADRLHTMFLAMAD--ARAVLIKLADRLHNMM 360 (464)
Q Consensus 320 ~r~~~~~~~~~qaE~lRkmLLAmaD--~RVVLIKLADRLhNMR 360 (464)
... .+..-.+.+|.++.--.| +...+||.||.++-+-
T Consensus 105 ~~~----iP~e~q~~Y~~~l~E~KDdt~EG~Iv~~ADkidal~ 143 (215)
T PF12917_consen 105 KKE----IPEEFQEAYRRRLKEGKDDTLEGQIVKAADKIDALY 143 (215)
T ss_dssp HHH----S-GGGHHHHHHHHS---SSSHHHHHHHHHHHHHHHH
T ss_pred Hhh----CCHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHH
Confidence 000 000112445555543333 7899999999998874
No 20
>PF09371 Tex_N: Tex-like protein N-terminal domain; InterPro: IPR018974 This presumed domain is found at the N terminus of Q45388 from SWISSPROT. This protein defines a novel family of prokaryotic transcriptional accessory factors []. ; PDB: 2OCE_A 3BZK_A 3BZC_A.
Probab=74.42 E-value=40 Score=32.71 Aligned_cols=66 Identities=20% Similarity=0.275 Sum_probs=34.4
Q ss_pred HHHHHHHHHH----------HhhhChHHHHH--------HHHHHHHhhcChh-hHHHHH-------HHHHHHhHHHHHHH
Q 012390 375 KETLEIFVPL----------ANRLGISTWKV--------QLENLCFKHLNPD-QHTELS-------SKLVECFDEAMVTS 428 (464)
Q Consensus 375 ~ETl~IYAPL----------A~RLGI~~lK~--------ELEDL~Fr~L~Pe-~Y~~I~-------~~L~e~~re~~I~~ 428 (464)
.|.-+||+|. |..+|+..+.. .++..+-+|++|+ ....+. +.|.+..-+. ..
T Consensus 89 ~elEdlY~PyK~kr~T~A~~Are~GLeplA~~il~~~~~~~~~~a~~~v~~~~gv~s~e~al~Ga~dIiAE~is~d--~~ 166 (193)
T PF09371_consen 89 QELEDLYLPYKPKRKTRATIAREAGLEPLADKILEQPESDPEVEAKKFVNEEKGVPSVEEALAGAQDIIAERISED--PE 166 (193)
T ss_dssp HHHHHHHGGGS---S-HHHHHHHTTTHHHHHHHHH-TTS-HHHHHHTT-BGGGTB-SHHHHHHHHHHHHHHHHTT---HH
T ss_pred HHHHHHHhhhccCcCCHHHHHHHcCCHHHHHHHHcCCccchHHHHHHHhCcccCCCCHHHHHHhHHHHHHHHHHcC--HH
Confidence 4555777764 66677765543 3456778888887 122222 2222222111 34
Q ss_pred HHHHHHHHHHHCCC
Q 012390 429 AIEKLEQALKDKNI 442 (464)
Q Consensus 429 ~~~~L~~~L~~~gI 442 (464)
+++.|++.+.+.|+
T Consensus 167 ~r~~lr~~~~~~g~ 180 (193)
T PF09371_consen 167 LREKLRKLLWKNGV 180 (193)
T ss_dssp HHHHHHHHHHHH-E
T ss_pred HHHHHHHHHHhccE
Confidence 66777777777664
No 21
>COG1896 Predicted hydrolases of HD superfamily [General function prediction only]
Probab=69.16 E-value=29 Score=33.49 Aligned_cols=97 Identities=20% Similarity=0.183 Sum_probs=51.4
Q ss_pred cCcchhHHHHHHHHHHH-------Hhc--CC-HHHHHHHHhhhccccc--cCC--HHHHHhhhcHHHHHHHHHhhcccc-
Q 012390 251 SGDPYLLHCVETAMLLA-------AIG--AN-STVVAAGLLHDTLDDA--FLS--YDYIFRTFGAGVADLVEGVSKLSQ- 315 (464)
Q Consensus 251 sGePYI~HpleVA~ILa-------~Lg--~D-~dtIaAALLHDvVEDT--~vT--lEeI~e~FG~eVA~LVegVTKl~~- 315 (464)
.++.-..|.+.||.+-- ..| .| ...+..||+||..|-- +++ ............-...+.+.+..-
T Consensus 30 ~~eSvaeHs~~va~la~~la~~~~~~~~~vn~~k~~~~AL~HD~~E~~~GDi~tp~k~~~~~~~~~~~e~e~~~~~~~~~ 109 (193)
T COG1896 30 NPESVAEHSFRVAILALLLADILNAKGGEVNPEKVALMALVHDLPEALTGDIPTPVKYARAGLYKEEEEAEEAAIHLLFG 109 (193)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHhcccHHHHhCCCCCchhhhcchHHHHHHHHHHHHHHcccC
Confidence 45677788777765332 222 34 3477889999999863 222 222333333333333333333211
Q ss_pred cchHHhhccccchHHHHHHHHHHHhhccCchhhHhHHhhHHhhc
Q 012390 316 LSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNM 359 (464)
Q Consensus 316 l~~~~r~~~~~~~~~qaE~lRkmLLAmaD~RVVLIKLADRLhNM 359 (464)
++. .-.+-++.. +.-.+..+.+||.||+|..+
T Consensus 110 ~p~-----------e~~~~~~~~-~~~~s~ea~~vk~aDkl~~~ 141 (193)
T COG1896 110 LPE-----------ELLELFREY-EKRSSLEARIVKDADKLELL 141 (193)
T ss_pred CcH-----------HHHHHHHHH-HccCCHHHHHHHHHHHHHHH
Confidence 010 001223322 12236889999999999988
No 22
>PF13023 HD_3: HD domain; PDB: 1XX7_D 2GZ4_B 4DMB_B.
Probab=69.04 E-value=25 Score=32.83 Aligned_cols=96 Identities=19% Similarity=0.238 Sum_probs=50.5
Q ss_pred CcchhHHHHHHHHHHH---H-hc--CCH-HHHHHHHhhhccccc--cCCHHH-H-HhhhcHHHHHHHHHhhcccccchHH
Q 012390 252 GDPYLLHCVETAMLLA---A-IG--ANS-TVVAAGLLHDTLDDA--FLSYDY-I-FRTFGAGVADLVEGVSKLSQLSKLA 320 (464)
Q Consensus 252 GePYI~HpleVA~ILa---~-Lg--~D~-dtIaAALLHDvVEDT--~vTlEe-I-~e~FG~eVA~LVegVTKl~~l~~~~ 320 (464)
.+..-.|...||.+.. . .+ .|. .++..+|+||+.|-- +++.-. + .+.+-..-...++.+..+ ++.
T Consensus 20 ~EsVAeHS~~vA~~a~~la~~~~~~~d~~k~~~~aL~HDl~E~~~GDi~~~~~~~~~~~~~~E~~a~~~l~~~--Lp~-- 95 (165)
T PF13023_consen 20 PESVAEHSWRVALIALLLAEEAGPDLDIEKVVKMALFHDLPEAITGDIPPPDGVDKEEKEEREEAAIEELFSL--LPE-- 95 (165)
T ss_dssp G-BHHHHHHHHHHHHHHHHHHHH-HC-HHHHHHHHHHTTTTHHHH----HHH-CCHHHHHHHHHHHHHHHCTT--SSC--
T ss_pred CccHHHHHHHHHHHHHHHhHHhcccCCHHHHHHHHhhccchhhhcCCCCCcccchHHHHHHHHHHHHHHHHHH--hhh--
Confidence 3566789999887543 2 34 664 578889999999852 233221 1 111222222233333222 221
Q ss_pred hhccccchHHHHHHHHHHHhhc---cCchhhHhHHhhHHhhcc
Q 012390 321 RENNTASKTVEADRLHTMFLAM---ADARAVLIKLADRLHNMM 360 (464)
Q Consensus 321 r~~~~~~~~~qaE~lRkmLLAm---aD~RVVLIKLADRLhNMR 360 (464)
...+.++.++.-+ ..+.+.++|-+|+|.-+-
T Consensus 96 ---------~l~~~~~~l~~E~e~~~s~ea~~vk~~D~l~~~l 129 (165)
T PF13023_consen 96 ---------ELQEELKELWEEFEEGESPEAKLVKAADKLEPLL 129 (165)
T ss_dssp ---------HHHHHHHHHHHHHHHT-SHHHHHHHHHHHHHHHH
T ss_pred ---------hHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhHHH
Confidence 1123444444333 268899999999998774
No 23
>COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]
Probab=64.23 E-value=9.1 Score=37.19 Aligned_cols=37 Identities=24% Similarity=0.390 Sum_probs=27.7
Q ss_pred cchhHHHHHHHHHHHH----hcCCH-HHHHHHHhhhcccccc
Q 012390 253 DPYLLHCVETAMLLAA----IGANS-TVVAAGLLHDTLDDAF 289 (464)
Q Consensus 253 ePYI~HpleVA~ILa~----Lg~D~-dtIaAALLHDvVEDT~ 289 (464)
++-+.|+++||+...+ .++|. .+-+||+|||.-.+-+
T Consensus 16 ~kR~~H~l~V~~~A~~LA~~y~~d~~kA~~AgilHD~aK~~p 57 (187)
T COG1713 16 EKRFEHCLGVAETAIELAEAYGLDPEKAYLAGILHDIAKELP 57 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhCC
Confidence 4568999999876554 46774 5678999999876543
No 24
>TIGR00488 putative HD superfamily hydrolase of NAD metabolism. The function of this protein family is unknown. Members of this family of uncharacterized proteins from the Mycoplasmas are longer at the amino end, fused to a region of nicotinamide nucleotide adenylyltransferase, an NAD salvage biosynthesis enzyme. Members are putative metal-dependent phosphohydrolases for NAD metabolism.
Probab=63.25 E-value=9 Score=35.13 Aligned_cols=34 Identities=18% Similarity=0.240 Sum_probs=24.7
Q ss_pred cchhHHHHHHHHHHHH----hcCC-HHHHHHHHhhhccc
Q 012390 253 DPYLLHCVETAMLLAA----IGAN-STVVAAGLLHDTLD 286 (464)
Q Consensus 253 ePYI~HpleVA~ILa~----Lg~D-~dtIaAALLHDvVE 286 (464)
+.-+.|.+.||.+... ++.| ...-+||||||+=.
T Consensus 7 ~~r~~Hsl~Va~~a~~lA~~~~~d~e~a~~AGLLHDIGk 45 (158)
T TIGR00488 7 EHRYQHCLGVGQTAKQLAEANKLDSKKAEIAGAYHDLAK 45 (158)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHhc
Confidence 3457899999875543 4665 45678999999865
No 25
>PRK12704 phosphodiesterase; Provisional
Probab=62.79 E-value=21 Score=39.55 Aligned_cols=36 Identities=36% Similarity=0.485 Sum_probs=25.9
Q ss_pred cCcchhHHHHHHHHHHH----HhcCCH-HHHHHHHhhhccc
Q 012390 251 SGDPYLLHCVETAMLLA----AIGANS-TVVAAGLLHDTLD 286 (464)
Q Consensus 251 sGePYI~HpleVA~ILa----~Lg~D~-dtIaAALLHDvVE 286 (464)
.+...+.|.++||.+.. .+|+|+ ....||||||+=.
T Consensus 332 ~~qn~l~Hs~~Va~lA~~lA~~lgld~~~a~~AgLLHDIGK 372 (520)
T PRK12704 332 YGQNVLQHSIEVAHLAGLMAAELGLDVKLAKRAGLLHDIGK 372 (520)
T ss_pred CCCcHhHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHccCc
Confidence 34557899999987543 367774 4557999999644
No 26
>PRK00106 hypothetical protein; Provisional
Probab=61.33 E-value=25 Score=39.17 Aligned_cols=37 Identities=35% Similarity=0.472 Sum_probs=28.4
Q ss_pred cCcchhHHHHHHHHHHH----HhcCC-HHHHHHHHhhhcccc
Q 012390 251 SGDPYLLHCVETAMLLA----AIGAN-STVVAAGLLHDTLDD 287 (464)
Q Consensus 251 sGePYI~HpleVA~ILa----~Lg~D-~dtIaAALLHDvVED 287 (464)
.|...+.|.++||.+.. .+|+| ...-.||||||+=.-
T Consensus 347 y~qnl~~HSv~VA~lA~~lA~~lgld~e~a~~AGLLHDIGK~ 388 (535)
T PRK00106 347 YGQNVLRHSVEVGKLAGILAGELGENVALARRAGFLHDMGKA 388 (535)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCc
Confidence 46678999999987643 46888 566789999998554
No 27
>COG1078 HD superfamily phosphohydrolases [General function prediction only]
Probab=60.82 E-value=5.2 Score=43.12 Aligned_cols=30 Identities=33% Similarity=0.336 Sum_probs=21.7
Q ss_pred hhHHHHHHHHHHHHh----cCCH----------HHHHHHHhhhc
Q 012390 255 YLLHCVETAMLLAAI----GANS----------TVVAAGLLHDT 284 (464)
Q Consensus 255 YI~HpleVA~ILa~L----g~D~----------dtIaAALLHDv 284 (464)
-+.|+++|..+...+ +... .+.+||||||+
T Consensus 52 RFeHSLGV~~la~~~~~~l~~~~~~~~~~~~~~~~~~AALLHDI 95 (421)
T COG1078 52 RFEHSLGVYHLARRLLEHLEKNSEEEIDEEERLLVRLAALLHDI 95 (421)
T ss_pred ccchhhHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHcc
Confidence 489999998766643 2111 48899999997
No 28
>PRK12705 hypothetical protein; Provisional
Probab=59.56 E-value=36 Score=37.81 Aligned_cols=36 Identities=39% Similarity=0.510 Sum_probs=27.3
Q ss_pred cCcchhHHHHHHHHHHH----HhcCCHH-HHHHHHhhhccc
Q 012390 251 SGDPYLLHCVETAMLLA----AIGANST-VVAAGLLHDTLD 286 (464)
Q Consensus 251 sGePYI~HpleVA~ILa----~Lg~D~d-tIaAALLHDvVE 286 (464)
.|...+.|.++||.+.. .+|+|++ ...||||||+=.
T Consensus 320 ygqnvl~HSl~VA~lA~~LA~~lGld~d~a~~AGLLHDIGK 360 (508)
T PRK12705 320 YGQNVLSHSLEVAHLAGIIAAEIGLDPALAKRAGLLHDIGK 360 (508)
T ss_pred CCchHHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHcCC
Confidence 45567899999988654 4677754 567999999865
No 29
>PF05153 DUF706: Family of unknown function (DUF706) ; InterPro: IPR007828 Inositol oxygenase (1.13.99.1 from EC) is involved in the biosynthesis of UDP-glucuronic acid (UDP-GlcA), providing nucleotide sugars for cell-wall polymers. It may be also involved in plant ascorbate biosynthesis [, ].; GO: 0005506 iron ion binding, 0050113 inositol oxygenase activity, 0019310 inositol catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 2HUO_A 3BXD_A 2IBN_A.
Probab=57.88 E-value=18 Score=36.60 Aligned_cols=53 Identities=17% Similarity=0.181 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhcCCccccCcchhHHHHHHHHHHHHhcCCHH-HHHHHHhhhc
Q 012390 232 FVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANST-VVAAGLLHDT 284 (464)
Q Consensus 232 ~l~kAl~fA~~aH~GQ~RksGePYI~HpleVA~ILa~Lg~D~d-tIaAALLHDv 284 (464)
.|.+|+++....-..--.....|-|.|++++|+.+..-.-+++ ...+||+||+
T Consensus 40 ti~eA~~~L~~LvDeSDPD~d~~~i~H~lQTAEaiR~d~~~~dW~~LtGLiHDL 93 (253)
T PF05153_consen 40 TIWEALELLNTLVDESDPDTDLPQIQHALQTAEAIRRDHPDPDWMQLTGLIHDL 93 (253)
T ss_dssp -HHHHHHHGGG---TT-TT--S-HHHHHHHHHHHHHHHSTT-HHHHHHHHHTTG
T ss_pred eHHHHHHHHHHhccCccCCCchhHHHHHHHHHHHHHHhCCCcchhhheehhccc
Confidence 3566666655554332223467899999999999998755555 4479999996
No 30
>COG2357 PpGpp synthetase catalytic domain [General function prediction only]
Probab=57.60 E-value=12 Score=37.59 Aligned_cols=27 Identities=26% Similarity=0.142 Sum_probs=21.3
Q ss_pred HHHHCCCceeeeeeeccchhHHhHHhhcC
Q 012390 436 ALKDKNISFLVLCGRHKSLYSIHCKMLKS 464 (464)
Q Consensus 436 ~L~~~gI~~~~V~GR~KhiYSIy~KM~kK 464 (464)
....+.|++ |+||+|++=||-.|++||
T Consensus 46 ~~~~~pie~--Vt~RvK~~~Si~~Kl~RK 72 (231)
T COG2357 46 LHDYNPIEH--VTSRVKSPESILEKLRRK 72 (231)
T ss_pred hcCCCchHH--HhhccCCHHHHHHHHHhc
Confidence 333444554 999999999999999987
No 31
>PRK13480 3'-5' exoribonuclease YhaM; Provisional
Probab=56.24 E-value=34 Score=35.57 Aligned_cols=32 Identities=28% Similarity=0.260 Sum_probs=24.4
Q ss_pred chhHHHHHHHHHHHHh-----cCCHH-HHHHHHhhhcc
Q 012390 254 PYLLHCVETAMLLAAI-----GANST-VVAAGLLHDTL 285 (464)
Q Consensus 254 PYI~HpleVA~ILa~L-----g~D~d-tIaAALLHDvV 285 (464)
-.+.|.++|+.++..+ .+|.+ .+++|||||+=
T Consensus 159 GLleHtl~v~~~~~~l~~~y~~~n~dll~agalLHDiG 196 (314)
T PRK13480 159 GLAYHVVSMLRLAKSICDLYPSLNKDLLYAGIILHDLG 196 (314)
T ss_pred HHHHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhh
Confidence 3679999999887765 36766 55677999974
No 32
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=52.83 E-value=48 Score=36.76 Aligned_cols=35 Identities=37% Similarity=0.542 Sum_probs=25.7
Q ss_pred CcchhHHHHHHHHHHH----HhcCCHH-HHHHHHhhhccc
Q 012390 252 GDPYLLHCVETAMLLA----AIGANST-VVAAGLLHDTLD 286 (464)
Q Consensus 252 GePYI~HpleVA~ILa----~Lg~D~d-tIaAALLHDvVE 286 (464)
|...+.|.++||.+.. .+|+|++ ...||||||+=.
T Consensus 327 ~~~~l~Hs~~VA~lA~~LA~~lgld~~~a~~AGLLHDIGK 366 (514)
T TIGR03319 327 GQNVLQHSIEVAHLAGIMAAELGEDVKLAKRAGLLHDIGK 366 (514)
T ss_pred CccHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHhcCc
Confidence 3446899999987644 4688764 456999999844
No 33
>COG2316 Predicted hydrolase (HD superfamily) [General function prediction only]
Probab=50.06 E-value=31 Score=33.43 Aligned_cols=63 Identities=16% Similarity=0.324 Sum_probs=42.0
Q ss_pred CcchhHHHHHHHHHHH----HhcCCHHHH-HHHHhhhcccc-c--------cCCHHHHHhh-hcHHHHHHHHHhhccc
Q 012390 252 GDPYLLHCVETAMLLA----AIGANSTVV-AAGLLHDTLDD-A--------FLSYDYIFRT-FGAGVADLVEGVSKLS 314 (464)
Q Consensus 252 GePYI~HpleVA~ILa----~Lg~D~dtI-aAALLHDvVED-T--------~vTlEeI~e~-FG~eVA~LVegVTKl~ 314 (464)
.+..+.||+.|+..+. ++|-|++.- .+|||||.=-+ | -.+.+-|++. ..++|++.|.+=....
T Consensus 45 ~e~L~kHcla~eavMr~lARe~gEDEEkw~~~GlLHD~DYe~tqgdpEeHgl~g~eiL~~edv~eeil~ai~~H~~~~ 122 (212)
T COG2316 45 SESLQKHCLAVEAVMRWLAREWGEDEEKWAVTGLLHDFDYELTQGDPEEHGLWGVEILREEDVSEEILDAIMGHAAYT 122 (212)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhhhccHHhhcCChhhcCccceehHhhcCCCHHHHHHHHHhhhhh
Confidence 3567899998876544 578887665 58899997322 1 2344555543 7788888887755443
No 34
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=49.97 E-value=1.7e+02 Score=34.30 Aligned_cols=93 Identities=17% Similarity=0.311 Sum_probs=53.9
Q ss_pred HHHHHHHhhccCchhhHhHHhhHHhhcccccCCCHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHhhcChhhHHH
Q 012390 333 DRLHTMFLAMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTE 412 (464)
Q Consensus 333 E~lRkmLLAmaD~RVVLIKLADRLhNMRtL~~lp~eKr~riA~ETl~IYAPLA~RLGI~~lK~ELEDL~Fr~L~Pe~Y~~ 412 (464)
|.+..+. .+.++. ||||-+.+.-. ++.+..|.+ .|+.++---|-.- |..++.|++.+-+ +-..-++
T Consensus 152 e~l~~~~-~i~~~~----klad~iaa~l~---~~~~~kQ~i-Le~~~v~~Rlek~--l~~l~~ei~~~~~---ek~I~~k 217 (782)
T COG0466 152 EELQSLN-SIDDPG----KLADTIAAHLP---LKLEEKQEI-LETLDVKERLEKL--LDLLEKEIDLLQL---EKRIRKK 217 (782)
T ss_pred HHHHHHh-cccchH----HHHHHHHHhCC---CCHHHHHHH-HHhCCHHHHHHHH--HHHHHHHHHHHHH---HHHHHHH
Confidence 4444333 445555 99998876543 333444333 3444444333332 3346677774433 3445556
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 012390 413 LSSKLVECFDEAMVTSAIEKLEQALKD 439 (464)
Q Consensus 413 I~~~L~e~~re~~I~~~~~~L~~~L~~ 439 (464)
+++.+++++||-|+.+-+..|+++|-.
T Consensus 218 Vk~~meK~QREyyL~EQlKaIqkELG~ 244 (782)
T COG0466 218 VKEQMEKSQREYYLREQLKAIQKELGE 244 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 666777777888988888888888753
No 35
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=49.65 E-value=18 Score=37.40 Aligned_cols=34 Identities=29% Similarity=0.392 Sum_probs=25.2
Q ss_pred cchhHHHHHHHHHHHH----hcCC-HHHHHHHHhhhccc
Q 012390 253 DPYLLHCVETAMLLAA----IGAN-STVVAAGLLHDTLD 286 (464)
Q Consensus 253 ePYI~HpleVA~ILa~----Lg~D-~dtIaAALLHDvVE 286 (464)
++...|.+.||.+... +|.| .+.-.||||||+=.
T Consensus 195 ~~~~~HSl~VA~~A~~LA~~~g~d~~~a~~AGLLHDIGK 233 (342)
T PRK07152 195 EYRYKHCLRVAQLAAELAKKNNLDPKKAYYAGLYHDITK 233 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHhhc
Confidence 4567999999876543 4666 46678999999865
No 36
>PRK01286 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=48.81 E-value=19 Score=37.80 Aligned_cols=32 Identities=28% Similarity=0.293 Sum_probs=23.5
Q ss_pred chhHHHHHHHHHHHH----hcCCHHHH-HHHHhhhcc
Q 012390 254 PYLLHCVETAMLLAA----IGANSTVV-AAGLLHDTL 285 (464)
Q Consensus 254 PYI~HpleVA~ILa~----Lg~D~dtI-aAALLHDvV 285 (464)
.-+.|.++|+.+-.. ++.+++.+ +|||+||+=
T Consensus 62 tR~~Hsl~V~~iar~~~~~l~~~~~l~~aaaL~HDiG 98 (336)
T PRK01286 62 TRLTHTLEVAQIARTIARALRLNEDLTEAIALGHDLG 98 (336)
T ss_pred cHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCC
Confidence 458999999986554 56665444 689999973
No 37
>cd08780 Death_TRADD Death Domain of Tumor Necrosis Factor Receptor 1-Associated Death Domain protein. Death domain (DD) of TRADD (TNF Receptor 1-Associated Death Domain or TNFRSF1A-associated via death domain) protein. TRADD is a central signaling adaptor for TNF-receptor 1 (TNFR1), mediating activation of Nuclear Factor -kappaB (NF-kB) and c-Jun N-terminal kinase (JNK), as well as caspase-dependent apoptosis. It also carries important immunological roles including germinal center formation, DR3-mediated T-cell stimulation, and TNFalpha-mediated inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into s
Probab=44.72 E-value=1.4e+02 Score=26.10 Aligned_cols=71 Identities=20% Similarity=0.293 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhC-----hHHHHHHHHHHHHhhcChhhHHHHHHHHHHH----hHHHHHHHHHHHHHHHH
Q 012390 367 LCKRQRFAKETLEIFVPLANRLG-----ISTWKVQLENLCFKHLNPDQHTELSSKLVEC----FDEAMVTSAIEKLEQAL 437 (464)
Q Consensus 367 ~eKr~riA~ETl~IYAPLA~RLG-----I~~lK~ELEDL~Fr~L~Pe~Y~~I~~~L~e~----~re~~I~~~~~~L~~~L 437 (464)
++..+.++...-.=|-.+|.+|| +.. .+++.+.-+|-.-..|..+-+.|..- .+++ .++.|-++|
T Consensus 2 ~~~~q~~~~nvGr~WK~laR~Lg~~cral~d--~~ID~I~~~y~r~gL~EqvyQ~L~~W~~~eg~~A----tv~~Lv~AL 75 (90)
T cd08780 2 PADQQHFAKSVGKKWKPVGRSLQKNCRALRD--PAIDNLAYEYDREGLYEQAYQLLRRFIQSEGKKA----TLQRLVQAL 75 (90)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHcccccccch--hHHHHHHhhcccccHHHHHHHHHHHHHHhccccc----hHHHHHHHH
Confidence 56678888888888999999999 654 46677776665444555555555432 2334 344555566
Q ss_pred HHCCCc
Q 012390 438 KDKNIS 443 (464)
Q Consensus 438 ~~~gI~ 443 (464)
.+.+..
T Consensus 76 ~~c~l~ 81 (90)
T cd08780 76 EENGLT 81 (90)
T ss_pred HHccch
Confidence 665554
No 38
>KOG1573 consensus Aldehyde reductase [General function prediction only]
Probab=44.66 E-value=53 Score=31.70 Aligned_cols=52 Identities=13% Similarity=0.116 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhcCCccccCcchhHHHHHHHHHHHHhcCCHHH-HHHHHhhhc
Q 012390 233 VIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTV-VAAGLLHDT 284 (464)
Q Consensus 233 l~kAl~fA~~aH~GQ~RksGePYI~HpleVA~ILa~Lg~D~dt-IaAALLHDv 284 (464)
|.+++++....-...-..-.+|-|.|+++.|+.+..-.-|.+= -.+||+||+
T Consensus 75 i~ec~ell~~~vDESDPDlDepni~Ha~QtAE~iR~~~Pd~dWlHLtaLiHDL 127 (204)
T KOG1573|consen 75 IWECCELLNEVVDESDPDLDEPNIQHALQTAEAIRKDYPDEDWLHLTALIHDL 127 (204)
T ss_pred HHHHHHHHHhhhcccCCCCchHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 5666666555433322223689999999999988876555543 368899995
No 39
>PRK03007 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=44.50 E-value=40 Score=36.64 Aligned_cols=58 Identities=26% Similarity=0.292 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHHHHHhcCCcccc--C---cchhHHHHHHHHHHHH----hcCCHH-HHHHHHhhhccc
Q 012390 229 REDFVIKAFYEAERAHRGQMRAS--G---DPYLLHCVETAMLLAA----IGANST-VVAAGLLHDTLD 286 (464)
Q Consensus 229 d~~~l~kAl~fA~~aH~GQ~Rks--G---ePYI~HpleVA~ILa~----Lg~D~d-tIaAALLHDvVE 286 (464)
|.++|...-.|-.-.++-|.-.. + ..-+.|.++||.+-.. ++.+.+ +.+|||+||+=.
T Consensus 40 DrdRIi~S~afRRL~~KtQVf~~~~~Df~~tRltHslev~~~~r~~~~~~~~~~~~~~~~~l~hd~Gh 107 (428)
T PRK03007 40 DRARVLHSAALRRLADKTQVVGPREGDTPRTRLTHSLEVAQIGRGIAAGLGCDPDLVDLAGLAHDIGH 107 (428)
T ss_pred hHHHHhCCHHHHhhhccceeccCCCCCccccHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCC
Confidence 45566666666666677775432 2 2347999999987664 556544 557889999743
No 40
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=43.12 E-value=77 Score=31.68 Aligned_cols=38 Identities=24% Similarity=0.514 Sum_probs=31.2
Q ss_pred HHHHHHHhc---CCHHHHHHHHhhhccccccCCHHHHHhhhcHHH
Q 012390 262 TAMLLAAIG---ANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGV 303 (464)
Q Consensus 262 VA~ILa~Lg---~D~dtIaAALLHDvVEDT~vTlEeI~e~FG~eV 303 (464)
|...+..+| .|.|.++ |++++-+.-....|.+.||.+|
T Consensus 17 Vs~~f~~~G~~vIDaD~va----R~vv~PG~p~~~~ive~FG~ei 57 (225)
T KOG3220|consen 17 VSQVFKALGIPVIDADVVA----REVVEPGTPAYRRIVEAFGTEI 57 (225)
T ss_pred HHHHHHHcCCcEecHHHHH----HHHhcCCChHHHHHHHHhCcee
Confidence 345555666 3888877 9999999888999999999998
No 41
>TIGR01399 hrcV type III secretion protein, HrcV family. Members of this family are closely homologous to the flagellar biosynthesis protein FlhA (TIGR01398) and should all participate in type III secretion systems. Examples include InvA (Salmonella enterica), LcrD (Yersinia enterocolitica), HrcV (Xanthomonas), etc. Type III secretion systems resemble flagellar biogenesis systems, and may share the property of translocating special classes of peptides through the membrane.
Probab=41.87 E-value=87 Score=36.10 Aligned_cols=147 Identities=17% Similarity=0.196 Sum_probs=92.1
Q ss_pred HHHHHHHhc---CCHHHHHHHHhhhcccccc---CCHHHHH---hhhcHHHHHHHHHhhcccccchHHhhccccchHHHH
Q 012390 262 TAMLLAAIG---ANSTVVAAGLLHDTLDDAF---LSYDYIF---RTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEA 332 (464)
Q Consensus 262 VA~ILa~Lg---~D~dtIaAALLHDvVEDT~---vTlEeI~---e~FG~eVA~LVegVTKl~~l~~~~r~~~~~~~~~qa 332 (464)
-...+...| .|+.++++.-|..++.... ++.+|++ +..+++=-.+|+.+.+.-.+.. . .
T Consensus 454 ~~~~a~~~Gytvvd~~svi~thl~e~i~~~a~ellgrqe~~~Lld~l~~~~p~Lv~Elp~~~~l~~-----------i-~ 521 (677)
T TIGR01399 454 GAEKLQGAGLGYFSDSQVITHRLKATLLRNAQEFIGIQETRYLLDQMEREYPELVKEVQRVLPLQR-----------I-A 521 (677)
T ss_pred HHHHHHHcCCeEEcHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhccCCHHH-----------H-H
Confidence 344445555 3888888888888876542 4444433 3345555566666633222221 1 2
Q ss_pred HHHHHHHh---hccCchhhHhHHhhHHhhcccccCCCHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHh------
Q 012390 333 DRLHTMFL---AMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFK------ 403 (464)
Q Consensus 333 E~lRkmLL---AmaD~RVVLIKLADRLhNMRtL~~lp~eKr~riA~ETl~IYAPLA~RLGI~~lK~ELEDL~Fr------ 403 (464)
+-+|++|- .+-|.+.++=-|||.-..-++...+.+.-|+++++..-.-|++-.+.|-+..+..++|+.--.
T Consensus 522 ~VLq~LL~E~VsIRdl~~IlEtLad~~~~~~d~~~LtE~VR~~L~r~I~~~~~~~~~~l~vi~l~p~~E~~l~~~i~~~~ 601 (677)
T TIGR01399 522 EVLQRLVSEQVSIRNLRLILETLIEWAQREKDVVMLTEYVRIALKRYICHRYANGGRQLSAVLIDPEIEELIRGAIRQTS 601 (677)
T ss_pred HHHHHHHhCCCccccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHhCCCCeeEEEEeCHHHHHHHHHHHhccC
Confidence 45666552 233888888888988877777666766678888886666666544456677777888877532
Q ss_pred -----hcChhhHHHHHHHHHHH
Q 012390 404 -----HLNPDQHTELSSKLVEC 420 (464)
Q Consensus 404 -----~L~Pe~Y~~I~~~L~e~ 420 (464)
-++|+..+++.+.+.+.
T Consensus 602 ~g~~~~l~p~~~~~li~~~~~~ 623 (677)
T TIGR01399 602 TGTYLALDPDDSEQLLDQIRQA 623 (677)
T ss_pred CCCccccCHHHHHHHHHHHHHH
Confidence 37788887777666543
No 42
>TIGR03760 ICE_TraI_Pfluor integrating conjugative element relaxase, PFL_4751 family. Members of this protein family are the TraI putative relaxases required for transfer by a subclass of integrating conjugative elements (ICE) as found in Pseudomonas fluorescens Pf-5, and understood from study of two related ICE, SXT and R391. This model represents the N-terminal domain. Note that no homology is detected to the similarly named TraI relaxase of the F plasmid.
Probab=38.41 E-value=1.5e+02 Score=29.29 Aligned_cols=33 Identities=30% Similarity=0.270 Sum_probs=22.5
Q ss_pred chhHHHHHHHHHHHHh---c-----CC------------HHHHHHHHhhhccc
Q 012390 254 PYLLHCVETAMLLAAI---G-----AN------------STVVAAGLLHDTLD 286 (464)
Q Consensus 254 PYI~HpleVA~ILa~L---g-----~D------------~dtIaAALLHDvVE 286 (464)
-.+.|.++|+.....+ . .. ..+++||||||+=.
T Consensus 67 GLl~HtLev~~~a~~l~~~y~~p~~~~~e~~~~~~~~w~~~~~~aaLlHDlgK 119 (218)
T TIGR03760 67 GLLDHTLEVTAAAVRLSKGYLLPPGAAPEEQAAQSDAWNAAVFYAALLHDLGK 119 (218)
T ss_pred hHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHhhhh
Confidence 3689999997766543 1 11 14788999999743
No 43
>cd08318 Death_NMPP84 Death domain of Nuclear Matrix Protein P84. Death domain (DD) found in the Nuclear Matrix Protein P84 (also known as HPR1 or THOC1). HPR1/p84 resides in the nuclear matrix and is part of the THO complex, also called TREX (transcription/export) complex, which functions in mRNP biogenesis at the interface between transcription and export of mRNA from the nucleus. Mice lacking THOC1 have abnormal testis development and are sterile. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=37.68 E-value=1.6e+02 Score=24.65 Aligned_cols=74 Identities=19% Similarity=0.141 Sum_probs=48.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHhhcChhhHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHCCCc
Q 012390 365 LPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVEC-FDEAMVTSAIEKLEQALKDKNIS 443 (464)
Q Consensus 365 lp~eKr~riA~ETl~IYAPLA~RLGI~~lK~ELEDL~Fr~L~Pe~Y~~I~~~L~e~-~re~~I~~~~~~L~~~L~~~gI~ 443 (464)
++.+.-..+|...-.=|-+||.+||+.. .+++.+- .-+|+.+...-+.|..= .++. -....+.|.++|.+.|+.
T Consensus 5 ~t~~~l~~ia~~iG~~Wk~Lar~LGls~--~dI~~i~--~~~~~~~eq~~~mL~~W~~r~g-~~AT~~~L~~aL~~~~~~ 79 (86)
T cd08318 5 VTGEQITVFANKLGEDWKTLAPHLEMKD--KEIRAIE--SDSEDIKMQAKQLLVAWQDREG-SQATPETLITALNAAGLN 79 (86)
T ss_pred CCHHHHHHHHHHHhhhHHHHHHHcCCCH--HHHHHHH--hcCCCHHHHHHHHHHHHHHhcC-ccccHHHHHHHHHHcCcH
Confidence 3445556677777778889999999974 4555544 44677777777777543 2322 133567777888887764
No 44
>PRK15337 type III secretion system protein InvA; Provisional
Probab=37.25 E-value=1.1e+02 Score=35.24 Aligned_cols=145 Identities=16% Similarity=0.178 Sum_probs=89.9
Q ss_pred HHHHHHhc---CCHHHHHHHHhhhccccc---cCCHHHHHh---hhcHHHHHHHHHhhcccccchHHhhccccchHHHHH
Q 012390 263 AMLLAAIG---ANSTVVAAGLLHDTLDDA---FLSYDYIFR---TFGAGVADLVEGVSKLSQLSKLARENNTASKTVEAD 333 (464)
Q Consensus 263 A~ILa~Lg---~D~dtIaAALLHDvVEDT---~vTlEeI~e---~FG~eVA~LVegVTKl~~l~~~~r~~~~~~~~~qaE 333 (464)
...+...| .|+.++++.=|..++... -++.+|++. ...++--++|+.+.+.-.+.. . .+
T Consensus 465 ~~~a~~~Gytvvd~~svi~tHl~evi~~~a~ellg~qev~~Lld~l~~~~p~Lv~elp~~l~l~~-----------i-~~ 532 (686)
T PRK15337 465 TEKLAKLGYVLRSAIDELYHCLSVLLLHNINEFFGIQETKHLLDQLEKKYPDLLKEVYRHATVQR-----------I-SE 532 (686)
T ss_pred HHHHHHCCCEEECHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHCHHHHHHHhccCCHHH-----------H-HH
Confidence 33344455 388888888888877653 244444333 345555566666633222221 1 23
Q ss_pred HHHHHH---hhccCchhhHhHHhhHHhhcccccCCCHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHh-------
Q 012390 334 RLHTMF---LAMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFK------- 403 (464)
Q Consensus 334 ~lRkmL---LAmaD~RVVLIKLADRLhNMRtL~~lp~eKr~riA~ETl~IYAPLA~RLGI~~lK~ELEDL~Fr------- 403 (464)
-+|++| +.+-|.+.++=-|+|.-..-++...+.+.-|+++++....-|+ -.+.|-+..+..++|++--.
T Consensus 533 VLq~LL~E~VsIRdl~~IlE~l~d~~~~~kd~~~LtE~VR~~L~r~I~~~~~-~~g~L~vi~L~~~~E~~l~~~i~~~~~ 611 (686)
T PRK15337 533 VLQRLLSERISIRNMKLIMEALALWAPREKDVIMLVEHVRGALARYICHKFA-AGGELRAVVLSAEVEDAIRKGIRQTSG 611 (686)
T ss_pred HHHHHHhcCCccccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhc-cCCceEEEEeCHHHHHHHHHHHhcccC
Confidence 455554 2334888888888988777777767766678899887777777 45667777888888876422
Q ss_pred ----hcChhhHHHHHHHHHHH
Q 012390 404 ----HLNPDQHTELSSKLVEC 420 (464)
Q Consensus 404 ----~L~Pe~Y~~I~~~L~e~ 420 (464)
.|+|+..+++.+.+.+.
T Consensus 612 g~~~~l~P~~~~~l~~~v~~~ 632 (686)
T PRK15337 612 GTFLNLDPAESENLMDLLTLA 632 (686)
T ss_pred CCccCcCHHHHHHHHHHHHHH
Confidence 25677776666655443
No 45
>PRK12720 secretion system apparatus protein SsaV; Provisional
Probab=36.23 E-value=1.2e+02 Score=35.07 Aligned_cols=147 Identities=16% Similarity=0.170 Sum_probs=90.3
Q ss_pred HHHHHHhc---CCHHHHHHHHhhhccccc---cCCHHHHH---hhhcHHHHHHHHHhhcccccchHHhhccccchHHHHH
Q 012390 263 AMLLAAIG---ANSTVVAAGLLHDTLDDA---FLSYDYIF---RTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEAD 333 (464)
Q Consensus 263 A~ILa~Lg---~D~dtIaAALLHDvVEDT---~vTlEeI~---e~FG~eVA~LVegVTKl~~l~~~~r~~~~~~~~~qaE 333 (464)
...+...| .|+.++++-=|..++... -++.+|++ +...++--++|+.+.+.-.+.. -.+
T Consensus 451 ~~~a~~~Gytvvd~~~viaTHL~evir~~a~ellg~qev~~Lld~l~~~~p~Lv~el~~~l~l~~------------i~~ 518 (675)
T PRK12720 451 AEQAQGFGLDVFAGSQRISALLKCVLLRYMGEFIGVQETRYLMDAMEKRYGELVKELQRQLPVGK------------IAE 518 (675)
T ss_pred HHHHHHCCCEEEcHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhccCCHHH------------HHH
Confidence 33444455 388888888887777543 24444433 3344555566666633222221 124
Q ss_pred HHHHHH---hhccCchhhHhHHhhHHhhcccccCCCHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHh-------
Q 012390 334 RLHTMF---LAMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFK------- 403 (464)
Q Consensus 334 ~lRkmL---LAmaD~RVVLIKLADRLhNMRtL~~lp~eKr~riA~ETl~IYAPLA~RLGI~~lK~ELEDL~Fr------- 403 (464)
-+|++| +.+-|.+.++=-|+|.-..-++...+.+.-|+++++....-|+.-.+.|-...+..++|+.--.
T Consensus 519 VLq~LL~E~VsIRdl~tIlE~l~d~~~~~kd~~~LtE~VR~~L~r~I~~~~~~~~~~l~vi~l~p~~E~~l~~~i~~~~~ 598 (675)
T PRK12720 519 ILQRLVSERVSIRDLRTIFGTLVEWAPREKDVVMLTEYVRIALRRHILRRFNHEGKWLPVLRIGEGIENLIRESIRQTSA 598 (675)
T ss_pred HHHHHHhcCCccccHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhcCCCCeeEEEEeCHHHHHHHHHHHhcccC
Confidence 456554 2334888888888888776666666666668888887666666544557677777788776532
Q ss_pred ----hcChhhHHHHHHHHHHHh
Q 012390 404 ----HLNPDQHTELSSKLVECF 421 (464)
Q Consensus 404 ----~L~Pe~Y~~I~~~L~e~~ 421 (464)
.|+|+.-+++.+.+.+..
T Consensus 599 g~~~~l~P~~~~~l~~~~~~~~ 620 (675)
T PRK12720 599 GTYSALSSRHSTQILQLIEQAL 620 (675)
T ss_pred CCccccCHHHHHHHHHHHHHHH
Confidence 366777777766665543
No 46
>PRK05318 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=36.05 E-value=29 Score=37.63 Aligned_cols=57 Identities=18% Similarity=0.172 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHHHHhcCCccccC-----cchhHHHHHHHHHHHHhc--------------C-CHHHH-HHHHhhhcc
Q 012390 229 REDFVIKAFYEAERAHRGQMRASG-----DPYLLHCVETAMLLAAIG--------------A-NSTVV-AAGLLHDTL 285 (464)
Q Consensus 229 d~~~l~kAl~fA~~aH~GQ~RksG-----ePYI~HpleVA~ILa~Lg--------------~-D~dtI-aAALLHDvV 285 (464)
|.++|...-.|=.-.++-|.-..+ ..-+.|.++||.+-..++ . +.+.+ +|||+||+=
T Consensus 28 D~dRii~s~~frRL~~ktQV~~~~~~d~~~tRltHslev~~i~r~~~~~~~~~~~~~~~~~~~~~~l~~a~~L~HDiG 105 (432)
T PRK05318 28 DRARILHSAAFRRLQAKTQVLGVGENDFYRTRLTHSLEVAQIGTGIVAQLKKEKQPELKPLLPSDSLIESLCLAHDIG 105 (432)
T ss_pred HHHHHhCCHHHhhhcccceeCCCCCCCCCcChhHHHHHHHHHHHHHHHHHhhccccccccccccHHHHHHHHHHhcCC
Confidence 444555555554445666632211 234799999998766432 1 44534 889999974
No 47
>PRK12792 flhA flagellar biosynthesis protein FlhA; Reviewed
Probab=32.69 E-value=1.2e+02 Score=35.06 Aligned_cols=143 Identities=12% Similarity=0.178 Sum_probs=90.6
Q ss_pred HHHHhc---CCHHHHHHHHhhhcccccc---CCHHHHHh---hhcHHHHHHHHHh-hcccccchHHhhccccchHHHHHH
Q 012390 265 LLAAIG---ANSTVVAAGLLHDTLDDAF---LSYDYIFR---TFGAGVADLVEGV-SKLSQLSKLARENNTASKTVEADR 334 (464)
Q Consensus 265 ILa~Lg---~D~dtIaAALLHDvVEDT~---vTlEeI~e---~FG~eVA~LVegV-TKl~~l~~~~r~~~~~~~~~qaE~ 334 (464)
.....| .|+.++++.=|.+++.... ++.+|++. .+.++=-.+|+.+ -+.-.+.. . .+-
T Consensus 471 ~a~~~Gytvvd~~svi~tHl~evi~~~a~ellgrqev~~Lld~l~~~~p~Lveelvp~~~~l~~-----------l-~~V 538 (694)
T PRK12792 471 EVRRDGFEPVDNASVLLTHLSEVIRNNLPQLLSYKDMRALLDRLDPEYKRLIDDICPSQISYSG-----------L-QAV 538 (694)
T ss_pred HHHHCCCEEEcHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhChHHHHHhcccCCCHHH-----------H-HHH
Confidence 334455 4888998888888886542 44444333 2344444455553 22222221 1 234
Q ss_pred HHHHH---hhccCchhhHhHHhhHHhhcccccCCCHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHh--------
Q 012390 335 LHTMF---LAMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFK-------- 403 (464)
Q Consensus 335 lRkmL---LAmaD~RVVLIKLADRLhNMRtL~~lp~eKr~riA~ETl~IYAPLA~RLGI~~lK~ELEDL~Fr-------- 403 (464)
+|++| +.+-|.+.++=-|+|.-..-++...+.+.-|+++++....-|+. .++|-++.+..|+|++--.
T Consensus 539 Lq~LL~E~VsIRdl~tIlEtL~d~~~~~~d~~~LtE~VR~~L~r~I~~~~~~-~g~l~vi~L~p~~E~~l~~~i~~~~~g 617 (694)
T PRK12792 539 LKLLLAERVSIRNLHLILEAVAEIAPHARRAEQIAEHVRMRIAQQICGDLSD-NGVLKVLRLGNRWDLAFHQSLKRDAKG 617 (694)
T ss_pred HHHHHHcCCccccHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhcc-CCceEEEEeCHHHHHHHHHHHhcccCC
Confidence 55555 22348888888899888777776667677799999988888887 7788888888888886421
Q ss_pred -----hcChhhHHHHHHHHHHH
Q 012390 404 -----HLNPDQHTELSSKLVEC 420 (464)
Q Consensus 404 -----~L~Pe~Y~~I~~~L~e~ 420 (464)
-|.|+..++|.+.+.+.
T Consensus 618 ~~l~~~l~p~~~~~l~~~~~~~ 639 (694)
T PRK12792 618 EVVEFDIDPRLVEQFGTEASEA 639 (694)
T ss_pred CccccCCCHHHHHHHHHHHHHH
Confidence 36677777766666544
No 48
>KOG2905 consensus Transcription initiation factor IIF, small subunit (RAP30) [Transcription]
Probab=31.48 E-value=25 Score=35.59 Aligned_cols=48 Identities=19% Similarity=0.181 Sum_probs=38.0
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHCCC
Q 012390 394 KVQLENLCFKHLNPDQHTELSSKLVECF-DEAMVTSAIEKLEQALKDKNI 442 (464)
Q Consensus 394 K~ELEDL~Fr~L~Pe~Y~~I~~~L~e~~-re~~I~~~~~~L~~~L~~~gI 442 (464)
|.|++|+-|+-.+-.+|-.|+...+.+. -++|+.+++..|. .|...|.
T Consensus 184 k~evld~lFk~FEk~~ywtlK~Lv~~t~QP~~fLKEiL~~ic-v~NkKg~ 232 (254)
T KOG2905|consen 184 KNEVLDMLFKAFEKYQYWTLKDLVEITKQPEAFLKEILKDIC-VLNKKGP 232 (254)
T ss_pred HHHHHHHHHHHhhcCccccHHHHHHHhcCHHHHHHHHHHHHH-HHhccCc
Confidence 7899999999999999999999888776 4778877777765 3444453
No 49
>TIGR01398 FlhA flagellar biosynthesis protein FlhA. This model describes flagellar biosynthesis protein FlhA, one of a large number of genes associated with the biosynthesis of functional bacterial flagella. Homologs of many such proteins, including FlhA, function in type III protein secretion systems. A separate model describes InvA (Salmonella enterica), LcrD (Yersinia enterocolitica), HrcV (Xanthomonas), etc., all of which score below the noise cutoff for this model.
Probab=31.18 E-value=1.5e+02 Score=34.34 Aligned_cols=138 Identities=19% Similarity=0.221 Sum_probs=83.0
Q ss_pred CCHHHHHHHHhhhcccccc---CCHHHHHh---hhcHHHHHHHHHhhc-ccccchHHhhccccchHHHHHHHHHHH---h
Q 012390 271 ANSTVVAAGLLHDTLDDAF---LSYDYIFR---TFGAGVADLVEGVSK-LSQLSKLARENNTASKTVEADRLHTMF---L 340 (464)
Q Consensus 271 ~D~dtIaAALLHDvVEDT~---vTlEeI~e---~FG~eVA~LVegVTK-l~~l~~~~r~~~~~~~~~qaE~lRkmL---L 340 (464)
.|+.++++.=|..++.... ++.+|+++ ...++--.+|+.+.. .-.+.. . .+-+|++| +
T Consensus 466 vd~~~vi~tHL~evi~~~a~ellgrqevq~Lld~l~~~~p~lveel~p~~~~l~~-----------l-~~VLq~LL~E~V 533 (678)
T TIGR01398 466 VDPATVLATHLSEVIKNNAAELLTRQEVQNLLDRLKEEYPKLVEELIPDKVPLGT-----------I-QKVLQLLLRERV 533 (678)
T ss_pred EcHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHChHHHHHhccCCCCHHH-----------H-HHHHHHHHhcCC
Confidence 3788888877777775432 44444332 244444455555533 111111 1 23455554 2
Q ss_pred hccCchhhHhHHhhHHhhcccccCCCHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHh-----------hcChhh
Q 012390 341 AMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFK-----------HLNPDQ 409 (464)
Q Consensus 341 AmaD~RVVLIKLADRLhNMRtL~~lp~eKr~riA~ETl~IYAPLA~RLGI~~lK~ELEDL~Fr-----------~L~Pe~ 409 (464)
.+-|.+.++=-|+|.-..-++...+.+.-|+++++....-|++--+.|-+..+..++|++--. -++|+.
T Consensus 534 sIRdl~tIlE~l~d~~~~~kd~~~LtE~VR~~L~r~I~~~~~~~~~~L~vi~l~p~~E~~l~~~i~~~~~g~~~~l~P~~ 613 (678)
T TIGR01398 534 SIRNLPTILETLADYAPITKDPDLLVEHVRQRLGRQITQQYLDEDGVLPVITLDPDLEAALAEALQRDGEGELLDLEPAL 613 (678)
T ss_pred ccccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHhCCCCeeEEEEeCHHHHHHHHHHHhccCCCCccCcCHHH
Confidence 234788888888888777666666766678888887666666644557777788888877422 356777
Q ss_pred HHHHHHHHHHH
Q 012390 410 HTELSSKLVEC 420 (464)
Q Consensus 410 Y~~I~~~L~e~ 420 (464)
.+++.+.+.+.
T Consensus 614 ~~~l~~~~~~~ 624 (678)
T TIGR01398 614 LEELVRAVRKA 624 (678)
T ss_pred HHHHHHHHHHH
Confidence 66666555443
No 50
>TIGR01353 dGTP_triPase deoxyguanosinetriphosphate triphosphohydrolase, putative. dGTP triphosphohydrolase (dgt) releases inorganic triphosphate, an unusual activity reaction product, from GTP. Its activity has been called limited to the Enterobacteriaceae, although homologous sequences are detected elsewhere. This finding casts doubt on whether the activity is shared in other species. In several of these other species, the homologous gene is found in an apparent operon with dnaG, the DNA primase gene. The enzyme from E. coli was shown to bind coopertatively to single stranded DNA. The biological role of dgt is unknown.
Probab=31.10 E-value=49 Score=35.21 Aligned_cols=57 Identities=23% Similarity=0.131 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHHHHHhcCCccccC-----cchhHHHHHHHHHHHHh----cC-----------CH-HHHHHHHhhhcc
Q 012390 229 REDFVIKAFYEAERAHRGQMRASG-----DPYLLHCVETAMLLAAI----GA-----------NS-TVVAAGLLHDTL 285 (464)
Q Consensus 229 d~~~l~kAl~fA~~aH~GQ~RksG-----ePYI~HpleVA~ILa~L----g~-----------D~-dtIaAALLHDvV 285 (464)
|.++|.....|=.-.++-|.-..+ ..-+.|.++||.+-..+ +. +. -+-+|||+||+=
T Consensus 8 D~dRii~s~~frRL~~ktQv~~~~~~d~~~tRltHslev~~i~r~~~~~l~~~~~~~~~~~~~~~~l~~~a~L~HDiG 85 (381)
T TIGR01353 8 DYDRIIHSSAFRRLQDKTQVFPLAENDFVRTRLTHSLEVAQVGRSIANLIGLRYDLELEELGPFERLAETACLAHDIG 85 (381)
T ss_pred hHHHHhCCHHHhhhccCceeCcCCCCCCCcCHhHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHhcCC
Confidence 344555555554445556653322 34589999999876643 33 32 355789999973
No 51
>PRK05910 type III secretion system protein; Validated
Probab=30.54 E-value=57 Score=36.90 Aligned_cols=88 Identities=14% Similarity=0.120 Sum_probs=62.7
Q ss_pred HHHHHHH---hhccCchhhHhHHhhHHhhcccccCCCHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHH---HhhcC
Q 012390 333 DRLHTMF---LAMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLC---FKHLN 406 (464)
Q Consensus 333 E~lRkmL---LAmaD~RVVLIKLADRLhNMRtL~~lp~eKr~riA~ETl~IYAPLA~RLGI~~lK~ELEDL~---Fr~L~ 406 (464)
+-+|++| +.+-|.+.++=-|||.-..-++...+.+.-|+++++..-.-|++--+.|-+..+..++|+.- .+-|+
T Consensus 431 ~VLq~LL~E~VsIRdl~tIlEaLad~~~~tkd~~~LtE~VR~~L~r~I~~~~~~~~g~L~vitL~p~~E~~l~~si~~L~ 510 (584)
T PRK05910 431 FLLRALVRERVSLHLFPKILEAIAVYGSQGKSSEELVEKVRKYLGKQIGRSLWNRQDTLEVITIDSHVEQFIRDSYSKSN 510 (584)
T ss_pred HHHHHHHhcCCccccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEEeCHHHHHHHHHHHhcCC
Confidence 3455554 22348888888899988887777777677788888876666665445566777888888774 44477
Q ss_pred hhhHHHHHHHHHHH
Q 012390 407 PDQHTELSSKLVEC 420 (464)
Q Consensus 407 Pe~Y~~I~~~L~e~ 420 (464)
|+..+++.+.+.+.
T Consensus 511 P~~~~~li~~v~~~ 524 (584)
T PRK05910 511 PDMNEKVVAQVKSL 524 (584)
T ss_pred HHHHHHHHHHHHHH
Confidence 99888877777654
No 52
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=28.96 E-value=1.7e+02 Score=24.86 Aligned_cols=44 Identities=20% Similarity=0.245 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHHhh----cChhhHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 012390 390 ISTWKVQLENLCFKH----LNPDQHTELSSKLVECFDEAMVTSAIEKLEQ 435 (464)
Q Consensus 390 I~~lK~ELEDL~Fr~----L~Pe~Y~~I~~~L~e~~re~~I~~~~~~L~~ 435 (464)
+..++|+|+||---+ -+|+.| .|... +-..|..+|..+.++|.+
T Consensus 48 l~~ie~~L~DL~~aV~ive~np~kF-~l~~~-Ei~~Rr~fv~~~~~~i~~ 95 (97)
T PF09177_consen 48 LQSIEWDLEDLEEAVRIVEKNPSKF-NLSEE-EISRRRQFVSAIRNQIKQ 95 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHH-T-HHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCcccc-CCCHH-HHHHHHHHHHHHHHHHHh
Confidence 457999999997543 478888 44432 112366777777766654
No 53
>PF09824 ArsR: ArsR transcriptional regulator; InterPro: IPR014517 Members of this family of archaeal proteins are conserved transcriptional regulators belonging to the ArsR family.
Probab=28.70 E-value=4.7e+02 Score=25.10 Aligned_cols=108 Identities=15% Similarity=0.183 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhhccccccCCHHHHHhhhcHHHHHHHHHhhcccccchHHhhccccchHHHHHHHHH
Q 012390 258 HCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHT 337 (464)
Q Consensus 258 HpleVA~ILa~Lg~D~dtIaAALLHDvVEDT~vTlEeI~e~FG~eVA~LVegVTKl~~l~~~~r~~~~~~~~~qaE~lRk 337 (464)
.|.+..-+|..++-+..- -++|.+-+...|.+||.+.||+++.+-+.-|.|..-+...=|.-....+.. ..+|.
T Consensus 3 Dp~eLVPll~~f~s~~~k----kV~~~Ls~~W~T~~El~e~~G~d~~~~L~~LkK~gLiE~qWrmP~pG~kPe--KEYht 76 (160)
T PF09824_consen 3 DPVELVPLLQTFNSEVYK----KVYDELSKGWMTEEELEEKYGKDVRESLLILKKGGLIESQWRMPEPGEKPE--KEYHT 76 (160)
T ss_pred CHHHHHHHHHHhCCHHHH----HHHHHHHhccCCHHHHHHHHCcCHHHHHHHHHHcCchhhccccCCCCCCch--HHHHh
Confidence 455555566655443322 346777788999999999999999988888877654432111111000111 11222
Q ss_pred HHhhc-cCchhhHhHHhhHHhhcccccCCCHHHHHHHHH
Q 012390 338 MFLAM-ADARAVLIKLADRLHNMMTLDALPLCKRQRFAK 375 (464)
Q Consensus 338 mLLAm-aD~RVVLIKLADRLhNMRtL~~lp~eKr~riA~ 375 (464)
-.-.. ++..+-+.-|+|.++ +...+.+.-+.++.
T Consensus 77 sYs~vqaNFqcs~~DLsdii~----i~f~~deel~~~~e 111 (160)
T PF09824_consen 77 SYSKVQANFQCSMEDLSDIIY----IAFMSDEELRDYVE 111 (160)
T ss_pred hHhheeeeeEeeHHHHHHHHh----eeecCHHHHHHHHH
Confidence 22222 367778888888774 44566665555544
No 54
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=28.27 E-value=8.8e+02 Score=28.77 Aligned_cols=15 Identities=13% Similarity=0.273 Sum_probs=10.4
Q ss_pred cccCCHHHHHhhhcH
Q 012390 287 DAFLSYDYIFRTFGA 301 (464)
Q Consensus 287 DT~vTlEeI~e~FG~ 301 (464)
+..+|.+++.+.+|.
T Consensus 231 ~~~IT~e~V~allg~ 245 (824)
T PRK07764 231 PEGVTYERAVALLGV 245 (824)
T ss_pred CCCCCHHHHHHHhcC
Confidence 445788887777664
No 55
>cd08313 Death_TNFR1 Death domain of Tumor Necrosis Factor Receptor 1. Death Domain (DD) found in tumor necrosis factor receptor-1 (TNFR-1). TNFR-1 has many names including TNFRSF1A, CD120a, p55, p60, and TNFR60. It activates two major intracellular signaling pathways that lead to the activation of the transcription factor NF-kB and the induction of cell death. Upon binding of its ligand TNF, TNFR-1 trimerizes which leads to the recruitment of an adaptor protein named TNFR-associated death domain protein (TRADD) through a DD/DD interaction. Mutations in the TNFRSF1A gene causes TNFR-associated periodic syndrome (TRAPS), a rare disorder characterized recurrent fever, myalgia, abdominal pain, conjunctivitis and skin eruptions. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation a
Probab=28.09 E-value=1.2e+02 Score=25.51 Aligned_cols=54 Identities=20% Similarity=0.229 Sum_probs=28.0
Q ss_pred HHHhhhChHHHHHHHHHHHHhh--cChhhHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHCCC
Q 012390 383 PLANRLGISTWKVQLENLCFKH--LNPDQHTELSSKLVECFD-EAMVTSAIEKLEQALKDKNI 442 (464)
Q Consensus 383 PLA~RLGI~~lK~ELEDL~Fr~--L~Pe~Y~~I~~~L~e~~r-e~~I~~~~~~L~~~L~~~gI 442 (464)
++|.+||+..- ++|..--.+ +.=..|+-+..|.....+ ++-++..+ +.|.+.+.
T Consensus 16 ~~~R~LGlse~--~Id~ie~~~~~~~Eq~yqmL~~W~~~~g~~~At~~~L~----~aLr~~~l 72 (80)
T cd08313 16 EFVRRLGLSDN--EIERVELDHRRCRDAQYQMLKVWKERGPRPYATLQHLL----SVLRDMEL 72 (80)
T ss_pred HHHHHcCCCHH--HHHHHHHhCCChHHHHHHHHHHHHHhcCCCcchHHHHH----HHHHHcCc
Confidence 44559999864 444443333 223445566666555444 55555554 44444443
No 56
>PF14473 RD3: RD3 protein
Probab=27.90 E-value=2e+02 Score=26.69 Aligned_cols=45 Identities=24% Similarity=0.314 Sum_probs=31.9
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHHHHHh------HHHHHHHHHHHHHHHHHH
Q 012390 394 KVQLENLCFKHLNPDQHTELSSKLVECF------DEAMVTSAIEKLEQALKD 439 (464)
Q Consensus 394 K~ELEDL~Fr~L~Pe~Y~~I~~~L~e~~------re~~I~~~~~~L~~~L~~ 439 (464)
+.||||||=| +.|..--.|...+++.. ..+++.-|...|++.|.+
T Consensus 77 rlqLE~lCsk-i~P~~~g~vI~RFRellae~e~~~~Ev~~iFr~vl~e~l~~ 127 (133)
T PF14473_consen 77 RLQLEDLCSK-IPPCECGPVISRFRELLAENEPEVWEVPRIFRSVLQEFLES 127 (133)
T ss_pred HHHHHHHHhc-CChhhhHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHh
Confidence 5789999997 77877766655544421 456777788888888865
No 57
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=27.72 E-value=9e+02 Score=27.06 Aligned_cols=143 Identities=12% Similarity=0.200 Sum_probs=77.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhhccccccCCHHHHHhhhcHHHHHHHHHhhcccccchHHhhccccch-----HHHHHH
Q 012390 260 VETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASK-----TVEADR 334 (464)
Q Consensus 260 leVA~ILa~Lg~D~dtIaAALLHDvVEDT~vTlEeI~e~FG~eVA~LVegVTKl~~l~~~~r~~~~~~~-----~~qaE~ 334 (464)
++...+|..+..+ ..-|.+.+++-|--+.++...|...+.+|-+|..++..-... -.+..... ..+.+.
T Consensus 190 ~~A~eil~~l~~~-----~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~gy~-l~~~~i~~~i~~i~~~l~~ 263 (560)
T PF06160_consen 190 LEAREILEKLKEE-----TDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEEEGYY-LEHLDIEEEIEQIEEQLEE 263 (560)
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCC-CCCCCHHHHHHHHHHHHHH
Confidence 4445555554332 335678888888778899999999999999988887542210 00000000 011122
Q ss_pred HHHHHhh--ccCchhhHhHHhhHHhhcccccCCCHHHHHHHHHHHH-HHHHHHHhhh-ChHHHHHHHHHHHHhhcChhh
Q 012390 335 LHTMFLA--MADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETL-EIFVPLANRL-GISTWKVQLENLCFKHLNPDQ 409 (464)
Q Consensus 335 lRkmLLA--maD~RVVLIKLADRLhNMRtL~~lp~eKr~riA~ETl-~IYAPLA~RL-GI~~lK~ELEDL~Fr~L~Pe~ 409 (464)
....|-. +..++..+-.+.++++-|-..-.- ..+.+....+.+ .++.=|.|-- ....++.|++-+.-.|.-.+.
T Consensus 264 ~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~le~-E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~ 341 (560)
T PF06160_consen 264 ALALLKNLELDEVEEENEEIEERIDQLYDILEK-EVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHN 341 (560)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCch
Confidence 2222211 225677788888888888642111 112222222222 2333333222 344888999999988876653
No 58
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=27.69 E-value=7.9e+02 Score=26.39 Aligned_cols=51 Identities=16% Similarity=0.101 Sum_probs=31.3
Q ss_pred ChHHHHHHHHHHHHhhc-ChhhHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHH
Q 012390 389 GISTWKVQLENLCFKHL-NPDQHTELSSKLVECF-DEAMVTSAIEKLEQALKD 439 (464)
Q Consensus 389 GI~~lK~ELEDL~Fr~L-~Pe~Y~~I~~~L~e~~-re~~I~~~~~~L~~~L~~ 439 (464)
.+..--.+|++|+.-|- ++..|+.+...+..++ -+..+..++..+.+.|.+
T Consensus 326 ~i~~~~~~l~~L~~~Y~~F~~aY~~LL~Ev~RRr~~~~k~~~i~~~~~eeL~~ 378 (412)
T PF04108_consen 326 SIQAYIDELEQLCEFYEGFLSAYDSLLLEVERRRAVRDKMKKIIREANEELDK 378 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556688999987766 8889987555443322 133445555555555544
No 59
>PF04753 Corona_NS2: Coronavirus non-structural protein NS2; InterPro: IPR006841 This is a family of Coronavirus nonstructural protein NS2. Phosphoamino acid analysis confirmed the phosphorylated nature of NS2 and identified serine and threonine as its phosphorylated amino acid residues []. It was also demonstrated that the ns2 gene product is not essential for Murine hepatitis virus replication in transformed murine cells [].
Probab=27.10 E-value=32 Score=30.33 Aligned_cols=11 Identities=45% Similarity=0.972 Sum_probs=9.1
Q ss_pred HHHHHHHHhhc
Q 012390 395 VQLENLCFKHL 405 (464)
Q Consensus 395 ~ELEDL~Fr~L 405 (464)
.||||+||+|-
T Consensus 20 t~LED~CfkfN 30 (109)
T PF04753_consen 20 TELEDFCFKFN 30 (109)
T ss_pred chHHHHHHHhc
Confidence 58999998854
No 60
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=25.94 E-value=40 Score=32.02 Aligned_cols=38 Identities=21% Similarity=0.434 Sum_probs=30.1
Q ss_pred HHHHHHHhcC---CHHHHHHHHhhhccccccCCHHHHHhhhcHHH
Q 012390 262 TAMLLAAIGA---NSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGV 303 (464)
Q Consensus 262 VA~ILa~Lg~---D~dtIaAALLHDvVEDT~vTlEeI~e~FG~eV 303 (464)
|+.+|.++|. |.|.++ |++++....-.+.|.+.||++|
T Consensus 16 v~~~l~~~G~~vidaD~i~----~~l~~~~~~~~~~l~~~FG~~i 56 (180)
T PF01121_consen 16 VSKILAELGFPVIDADEIA----HELYEPGSEGYKALKERFGEEI 56 (180)
T ss_dssp HHHHHHHTT-EEEEHHHHH----HHCTSCTCHHHHHHHHHHGGGG
T ss_pred HHHHHHHCCCCEECccHHH----HHHhhcCHHHHHHHHHHcCccc
Confidence 5778888874 788877 8888876666789999999887
No 61
>PRK10280 dipeptidyl carboxypeptidase II; Provisional
Probab=25.87 E-value=3.7e+02 Score=30.99 Aligned_cols=118 Identities=11% Similarity=0.119 Sum_probs=63.0
Q ss_pred cccCCHHHHHhhhcHHHHHHHHHhhcccccchHHhhccccchHHHHHHHHHHHhhccCchhhHhHHhhHHhhcccccCCC
Q 012390 287 DAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALP 366 (464)
Q Consensus 287 DT~vTlEeI~e~FG~eVA~LVegVTKl~~l~~~~r~~~~~~~~~qaE~lRkmLLAmaD~RVVLIKLADRLhNMRtL~~lp 366 (464)
-..++.++|...|...++..-..+..+...+. . ..+.+.+.++......|-+..+.+.+|+... +
T Consensus 20 f~~i~~e~~~~a~~~~~~~~~~~i~~i~~~~~------~-------~t~~n~i~~ld~~~~~l~~~~~~~~~l~~v~--~ 84 (681)
T PRK10280 20 FDQIADHHYRPAFDEGVRQKRAEIAAIALNPQ------A-------PDFNNTILALEQSGELLTRVTSVFFAMTAAH--T 84 (681)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHHHHcCCC------C-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--C
Confidence 34567788888888777766555555432110 0 0122233444434445555566666666433 3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhChH-HHHHHHHHHH----HhhcChhhHHHHHHHHHH
Q 012390 367 LCKRQRFAKETLEIFVPLANRLGIS-TWKVQLENLC----FKHLNPDQHTELSSKLVE 419 (464)
Q Consensus 367 ~eKr~riA~ETl~IYAPLA~RLGI~-~lK~ELEDL~----Fr~L~Pe~Y~~I~~~L~e 419 (464)
.++.+..+.|+.....-.-+.++.. .|-.-|..+. ...|.|++.+-+...+..
T Consensus 85 ~~~~r~a~~~~~~~l~~~~~~l~~~~~Ly~~l~~~~~~~~~~~l~~e~~r~l~~~l~d 142 (681)
T PRK10280 85 NDELQRLDEQFSAELAELANDIYLNGELFARVDAVWQQRESLGLDSESIRLVEVIHQR 142 (681)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHcCccccCCCHHHHHHHHHHHHH
Confidence 3455666666665555555555443 3333344442 236788887777766654
No 62
>COG4339 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.34 E-value=4.6e+02 Score=25.67 Aligned_cols=37 Identities=19% Similarity=0.232 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhcCCHH-HHHHHHhhhccccccCCHHH
Q 012390 258 HCVETAMLLAAIGANST-VVAAGLLHDTLDDAFLSYDY 294 (464)
Q Consensus 258 HpleVA~ILa~Lg~D~d-tIaAALLHDvVEDT~vTlEe 294 (464)
-+++.+..+..+--|++ +-.|+|.||+|-||...-.|
T Consensus 47 a~L~~~~~~r~la~dp~~VElA~WfHD~iYDtqaqDNE 84 (208)
T COG4339 47 AVLQTIQTLRTLAQDPPGVELAAWFHDVIYDTQAQDNE 84 (208)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHhhhhccccH
Confidence 33444444444444544 44788999999999655443
No 63
>COG0232 Dgt dGTP triphosphohydrolase [Nucleotide transport and metabolism]
Probab=24.62 E-value=1.1e+02 Score=33.26 Aligned_cols=57 Identities=26% Similarity=0.301 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHHHHhcCCccc--cCc---chhHHHHHHHHHHH----HhcCC-----HHHH-HHHHhhhcc
Q 012390 229 REDFVIKAFYEAERAHRGQMRA--SGD---PYLLHCVETAMLLA----AIGAN-----STVV-AAGLLHDTL 285 (464)
Q Consensus 229 d~~~l~kAl~fA~~aH~GQ~Rk--sGe---PYI~HpleVA~ILa----~Lg~D-----~dtI-aAALLHDvV 285 (464)
|.++|..--.|=.-.++-|.-. .|. --++|.+|||.|-. .++.+ ++.+ +|||.||+=
T Consensus 38 Dr~RIihSaAfRRLq~KTQVf~~~~~D~~RTRLTHSLEVAQIgRsia~~l~~~~~~~~~dL~E~a~LaHDiG 109 (412)
T COG0232 38 DRDRIIHSAAFRRLQDKTQVFPLHEGDFYRTRLTHSLEVAQIGRSIARELGLDLDLPFEDLVETACLAHDIG 109 (412)
T ss_pred cchhhhhhHHHHhhcccceecccccCCcccccchhhHHHHHHHHHHHHHhccccCCChHHHHHHHHHHhcCC
Confidence 3444544444444456666533 233 24899999999765 45677 6555 578999974
No 64
>PF14907 NTP_transf_5: Uncharacterised nucleotidyltransferase
Probab=23.35 E-value=4.2e+02 Score=25.23 Aligned_cols=66 Identities=20% Similarity=0.262 Sum_probs=41.7
Q ss_pred HHhhhChH-HHHHHHHHHHHhhcCh-hhHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHCCCceeeeee
Q 012390 384 LANRLGIS-TWKVQLENLCFKHLNP-DQHTELSSKLVECF-DEAMVTSAIEKLEQALKDKNISFLVLCG 449 (464)
Q Consensus 384 LA~RLGI~-~lK~ELEDL~Fr~L~P-e~Y~~I~~~L~e~~-re~~I~~~~~~L~~~L~~~gI~~~~V~G 449 (464)
+|.+-++. -+..-|..+.+...-| +..++++....... +...+......|.+.|+++||.+--++|
T Consensus 11 ~a~~h~v~pll~~~l~~~~~~~~~p~~~~~~l~~~~~~~~~rn~~~~~~~~~i~~~l~~~gI~~~~lKG 79 (249)
T PF14907_consen 11 LARRHRVAPLLYRNLKRLGLSDRPPDEVLQRLKSAYRRNALRNLRLLAELQEILAALNANGIPVILLKG 79 (249)
T ss_pred HHHHcCCHHHHHHHHHhCccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEch
Confidence 45555554 3444555555555555 55555655544433 5666777888889999999998643555
No 65
>PF06744 DUF1215: Protein of unknown function (DUF1215); InterPro: IPR010623 This domain represents a conserved region situated towards the C-terminal end of several hypothetical bacterial proteins of unknown function. A few members resemble the ImcF protein, which has been proposed [] to be involved in Vibrio cholerae cell surface reorganisation that results in increased adherence to epithelial cells line and increased conjugation frequency.
Probab=23.04 E-value=87 Score=27.75 Aligned_cols=51 Identities=25% Similarity=0.444 Sum_probs=34.7
Q ss_pred ccccccCcCcchhhHhhhhhcccccCCCCCcccccCCcccccCchhHHHHHH
Q 012390 146 FHTFFKGSSGLFNGFVRNALGSCVDYDSSSFRVHNGDAVLNVGSSAALIDEL 197 (464)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 197 (464)
+..-.-|.+|+++.|+..-|+.-||..........++.. +.+-+..+++.|
T Consensus 69 Df~~fF~p~G~ld~F~~~~L~~fvd~~~~~w~~~~~~~~-~~~~~~~~L~~~ 119 (125)
T PF06744_consen 69 DFARFFGPGGVLDQFFNQYLKPFVDTSGNPWRWRPGDGQ-GLGLSPAFLAQF 119 (125)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHhCCCCcceeCCCCCc-CCCCCHHHHHHH
Confidence 344445566999999999999999999887776665532 333344444433
No 66
>PLN02857 octaprenyl-diphosphate synthase
Probab=22.58 E-value=2.6e+02 Score=30.27 Aligned_cols=28 Identities=29% Similarity=0.408 Sum_probs=16.3
Q ss_pred HHHHhhhccccccCC---HHHHHhhhcHHHH
Q 012390 277 AAGLLHDTLDDAFLS---YDYIFRTFGAGVA 304 (464)
Q Consensus 277 aAALLHDvVEDT~vT---lEeI~e~FG~eVA 304 (464)
.|.|+||=|.|.... ...+-..||..+|
T Consensus 175 ~ASLIHDDI~D~s~~RRG~pt~h~~~G~~~A 205 (416)
T PLN02857 175 TASLIHDDVLDESDMRRGKETVHQLYGTRVA 205 (416)
T ss_pred HHHHHHCccccCCcccCCCCCccccCCccee
Confidence 477999877665322 1223445776655
No 67
>PF08336 P4Ha_N: Prolyl 4-Hydroxylase alpha-subunit, N-terminal region; InterPro: IPR013547 The members found in this entry are eukaryotic proteins, and include all three isoforms of the prolyl 4-hydroxylase alpha subunit. This enzyme (1.14.11.2 from EC) is important in the post-translational modification of collagen, as it catalyses the formation of 4-hydroxyproline. In vertebrates, the complete enzyme is an alpha2-beta2 tetramer; the beta-subunit is identical to protein disulphide isomerase [, , , ]. The function of the N-terminal region featured in this family does not seem to be known. ; GO: 0004656 procollagen-proline 4-dioxygenase activity, 0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, 0055114 oxidation-reduction process, 0005783 endoplasmic reticulum
Probab=22.45 E-value=2.2e+02 Score=25.39 Aligned_cols=45 Identities=13% Similarity=0.182 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhcCCccccCcchhHHHHHHHHHHHHhcCCHHHHH
Q 012390 232 FVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVA 277 (464)
Q Consensus 232 ~l~kAl~fA~~aH~GQ~RksGePYI~HpleVA~ILa~Lg~D~dtIa 277 (464)
.|+..++.....|.. ...+.+-|+.||+..=.++..+..|...+.
T Consensus 33 ~l~~~~~~~~~~~~~-~~~d~e~yl~nPlnaF~LIrRl~~dW~~~~ 77 (134)
T PF08336_consen 33 TLKRFLDEMKREHEK-AKSDPEEYLSNPLNAFSLIRRLHQDWPKWE 77 (134)
T ss_pred HHHHHHHHHHHHHHH-hhcchhhhhhcHHHHHHHHHHHHHhhhhHH
Confidence 344444444444433 223567899999998777777777765553
No 68
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=22.22 E-value=68 Score=29.75 Aligned_cols=39 Identities=26% Similarity=0.375 Sum_probs=29.4
Q ss_pred HHHHHHHhc----CCHHHHHHHHhhhccccccCCHHHHHhhhcHHHH
Q 012390 262 TAMLLAAIG----ANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVA 304 (464)
Q Consensus 262 VA~ILa~Lg----~D~dtIaAALLHDvVEDT~vTlEeI~e~FG~eVA 304 (464)
|+.+|++.+ .|.|.++ |++++....-.++|.+.||++|.
T Consensus 15 ~~~~l~~~~~~~~i~~D~~~----~~~~~~~~~~~~~i~~~fg~~i~ 57 (188)
T TIGR00152 15 VANYLADKYHFPVIDADKIA----HQVVEKGSPAYEKIVDHFGAQIL 57 (188)
T ss_pred HHHHHHHhcCCeEEeCCHHH----HHHHhcCChHHHHHHHHHCHHHh
Confidence 466777665 4666655 88888877778999999998875
No 69
>COG2733 Predicted membrane protein [Function unknown]
Probab=22.21 E-value=6e+02 Score=27.79 Aligned_cols=77 Identities=18% Similarity=0.240 Sum_probs=50.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHhhcC-----hhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHC
Q 012390 366 PLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLN-----PDQHTELSSKLVECFDEAMVTSAIEKLEQALKDK 440 (464)
Q Consensus 366 p~eKr~riA~ETl~IYAPLA~RLGI~~lK~ELEDL~Fr~L~-----Pe~Y~~I~~~L~e~~re~~I~~~~~~L~~~L~~~ 440 (464)
.|+..+++.+||..+-.-+...|.=..++.-++-+-.++|. |-.=.-+...+.+.+.++.+++++..|...+...
T Consensus 120 ~~en~~~v~~~t~~l~~~~~~lld~~~iq~~ik~~v~~~i~e~~~~~~~~~vL~~l~~d~r~q~l~D~~~~~L~r~~~~~ 199 (415)
T COG2733 120 QPENAQRVSQETLKLLSQLLELLDDDDIQRVIKRAVIRAIAEVYLGPTAGRVLESLTADDRHQALLDKLIDRLIRWLLND 199 (415)
T ss_pred CchhHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhh
Confidence 46677888888888888888888777777777777766643 2222222222233334677777777777777666
Q ss_pred CC
Q 012390 441 NI 442 (464)
Q Consensus 441 gI 442 (464)
.+
T Consensus 200 ~v 201 (415)
T COG2733 200 KV 201 (415)
T ss_pred hh
Confidence 55
No 70
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=22.01 E-value=4.6e+02 Score=24.94 Aligned_cols=100 Identities=22% Similarity=0.235 Sum_probs=59.1
Q ss_pred cccCchhHHHHHHhhhcccccccccHHHHHHHHHHHHHhhC-ChhhHHHHHHHHHHHHHHhcCCccccCcchhHHHHHHH
Q 012390 185 LNVGSSAALIDELTFNMEDNIVEGNLETYAKEFLANAQLKH-KIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETA 263 (464)
Q Consensus 185 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Ll~~~~~~~-~~~d~~~l~kAl~fA~~aH~GQ~RksGePYI~HpleVA 263 (464)
||.+++..++.+|--.++. ..+. --+.++|.-+.... .....+.+++|+.+ +++++.-||.- -++.
T Consensus 49 lg~~~s~~ei~~l~~~~d~--~~~~--idf~~Fl~~ms~~~~~~~~~Eel~~aF~~--------fD~d~dG~Is~-~eL~ 115 (160)
T COG5126 49 LGFNPSEAEINKLFEEIDA--GNET--VDFPEFLTVMSVKLKRGDKEEELREAFKL--------FDKDHDGYISI-GELR 115 (160)
T ss_pred cCCCCcHHHHHHHHHhccC--CCCc--cCHHHHHHHHHHHhccCCcHHHHHHHHHH--------hCCCCCceecH-HHHH
Confidence 4677888888888777775 2221 22344554443332 33457889999987 55555555532 2334
Q ss_pred HHHHHhcCC-HHHHHHHHhhhccc--cccCCHHHHHh
Q 012390 264 MLLAAIGAN-STVVAAGLLHDTLD--DAFLSYDYIFR 297 (464)
Q Consensus 264 ~ILa~Lg~D-~dtIaAALLHDvVE--DT~vTlEeI~e 297 (464)
.+|..+|-+ ++.-+..||-.+.+ |+.+++++..+
T Consensus 116 ~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~ 152 (160)
T COG5126 116 RVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKK 152 (160)
T ss_pred HHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHH
Confidence 456666643 44555667777775 45688777655
No 71
>PLN02422 dephospho-CoA kinase
Probab=21.07 E-value=69 Score=31.89 Aligned_cols=39 Identities=21% Similarity=0.365 Sum_probs=28.7
Q ss_pred HHHHHHHhcC---CHHHHHHHHhhhccccccCCHHHHHhhhcHHHH
Q 012390 262 TAMLLAAIGA---NSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVA 304 (464)
Q Consensus 262 VA~ILa~Lg~---D~dtIaAALLHDvVEDT~vTlEeI~e~FG~eVA 304 (464)
|+.+|+++|. |.|.++ |++++....-+++|.+.||++|.
T Consensus 17 v~~~l~~~g~~~idaD~~~----~~l~~~g~~~~~~l~~~FG~~il 58 (232)
T PLN02422 17 VSNLFKSSGIPVVDADKVA----RDVLKKGSGGWKRVVAAFGEDIL 58 (232)
T ss_pred HHHHHHHCCCeEEehhHHH----HHHHHhhHHHHHHHHHHhCHHhc
Confidence 4566666664 666655 78888776667899999999885
No 72
>COG1578 Uncharacterized conserved protein [Function unknown]
Probab=20.51 E-value=5.7e+02 Score=26.62 Aligned_cols=106 Identities=21% Similarity=0.139 Sum_probs=58.3
Q ss_pred HhhHHhhcccccCCCHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHh----hc-ChhhHHHHHHHHHHHh-----
Q 012390 352 LADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFK----HL-NPDQHTELSSKLVECF----- 421 (464)
Q Consensus 352 LADRLhNMRtL~~lp~eKr~riA~ETl~IYAPLA~RLGI~~lK~ELEDL~Fr----~L-~Pe~Y~~I~~~L~e~~----- 421 (464)
+.-+.+|.-.+...++++|.++..|++.+.+-. -|..++-..+--+.|+ ++ +++-|++.+...++..
T Consensus 11 ~l~q~~~~~~~~t~ded~~~~~~~~~~~lls~~---y~~~~~~a~~~t~ihr~v~k~~g~eDPyke~K~r~NeiA~~vl~ 87 (285)
T COG1578 11 LLRQAVNAVKLATDDEDLRSRIMSEALKLLSEE---YGESAVPAIAGTLIHREVYKILGNEDPYKEYKRRANEIALKVLP 87 (285)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh---hCcCCCcHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHH
Confidence 334444444445577889999999998876543 4444443334444443 43 4666777776665543
Q ss_pred --HHH---HHHHHHHHHHHHHHHCCCceeeeee-eccchhHHhHHh
Q 012390 422 --DEA---MVTSAIEKLEQALKDKNISFLVLCG-RHKSLYSIHCKM 461 (464)
Q Consensus 422 --re~---~I~~~~~~L~~~L~~~gI~~~~V~G-R~KhiYSIy~KM 461 (464)
|+. .-..+...++-+..-+-|.+. |.| +++-+----+||
T Consensus 88 ~vr~~~~~~~~dl~~Avk~ai~GN~iDfg-v~G~~~~~lee~~~~~ 132 (285)
T COG1578 88 KVRENIEDTPEDLKTAVKLAIVGNVIDFG-VLGFSPFDLEEEVEKL 132 (285)
T ss_pred HHHhcccCChHHHHHHHHHHHHhcceeec-cccCCHhHHHHHHHHh
Confidence 221 111233333444445667786 887 666555444444
No 73
>PRK10885 cca multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase; Reviewed
Probab=20.31 E-value=1.1e+03 Score=25.38 Aligned_cols=33 Identities=21% Similarity=0.087 Sum_probs=27.3
Q ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHhhhccc
Q 012390 254 PYLLHCVETAMLLAAIGANSTVVAAGLLHDTLD 286 (464)
Q Consensus 254 PYI~HpleVA~ILa~Lg~D~dtIaAALLHDvVE 286 (464)
+...|.+.|...+..+..+....-||||||+=.
T Consensus 227 dv~~Htl~~l~~~~~l~~~l~lr~AaLlHDlGK 259 (409)
T PRK10885 227 DTGIHTLMVLDQAAKLSPSLDVRFAALCHDLGK 259 (409)
T ss_pred cHHHHHHHHHHHHHhcCCCHHHHHHHHhccccC
Confidence 456899998888888777878889999999854
No 74
>PRK01096 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=20.10 E-value=73 Score=34.69 Aligned_cols=32 Identities=28% Similarity=0.336 Sum_probs=21.3
Q ss_pred chhHHHHHHHHHHHHh----c--C--C------------HHHHHHHHhhhcc
Q 012390 254 PYLLHCVETAMLLAAI----G--A--N------------STVVAAGLLHDTL 285 (464)
Q Consensus 254 PYI~HpleVA~ILa~L----g--~--D------------~dtIaAALLHDvV 285 (464)
.-+.|.++|+.+-..+ + + + .-+.+|||+||+=
T Consensus 61 tRltHsleV~~i~r~i~~~l~~~l~~~~~~~~~~~~~~~~lv~aa~L~HDiG 112 (440)
T PRK01096 61 TRLTHSLEVSCVGRSLGMRVGETLKEEKLPDWISPADIGAIVQSACLAHDIG 112 (440)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHhhhccccccccchHHHHHHHHHHHhcCC
Confidence 4478999998875543 2 1 1 1346889999973
Done!