Query 012390
Match_columns 464
No_of_seqs 220 out of 1637
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 08:31:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012390.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012390hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vj7_A Bifunctional RELA/SPOT; 100.0 1.9E-68 6.4E-73 550.3 22.3 244 214-464 9-255 (393)
2 3nqw_A CG11900; stringent resp 100.0 4E-36 1.4E-40 280.1 11.6 166 228-404 4-176 (179)
3 3nr1_A HD domain-containing pr 100.0 6.9E-34 2.4E-38 264.9 16.5 145 229-384 3-156 (178)
4 3l9d_A SMU.1046C, putative GTP 99.1 1.4E-11 4.8E-16 120.8 2.5 73 379-464 19-91 (255)
5 2be3_A GTP pyrophosphokinase; 95.8 0.007 2.4E-07 58.1 4.5 19 446-464 44-62 (226)
6 3b57_A LIN1889 protein; Q92AN1 94.9 0.14 4.7E-06 47.7 10.1 55 231-288 5-64 (209)
7 2pq7_A Predicted HD superfamil 94.8 0.38 1.3E-05 44.7 13.0 50 232-284 14-68 (220)
8 3dto_A BH2835 protein; all alp 94.4 0.25 8.6E-06 47.0 10.8 55 230-287 4-63 (223)
9 2pjq_A Uncharacterized protein 94.2 0.23 7.8E-06 47.0 10.1 57 227-286 6-67 (231)
10 2qgs_A Protein Se1688; alpha-h 94.2 0.37 1.3E-05 45.3 11.4 54 231-287 5-64 (225)
11 3djb_A Hydrolase, HD family; a 94.0 0.32 1.1E-05 46.2 10.5 55 230-287 4-63 (223)
12 2paq_A 5'-deoxynucleotidase YF 91.9 0.55 1.9E-05 43.9 8.7 95 252-359 29-144 (201)
13 2ibn_A Inositol oxygenase; red 85.4 0.88 3E-05 44.4 5.1 54 232-285 37-91 (250)
14 2o08_A BH1327 protein; putativ 70.6 3.6 0.00012 37.1 4.2 33 254-286 18-55 (188)
15 3kh1_A Predicted metal-depende 70.5 10 0.00034 35.6 7.2 116 231-359 8-146 (200)
16 3ccg_A HD superfamily hydrolas 70.5 3.7 0.00013 37.2 4.2 32 255-286 20-56 (190)
17 2cqz_A 177AA long hypothetical 68.9 4.4 0.00015 36.8 4.3 35 253-287 31-75 (177)
18 2ogi_A Hypothetical protein SA 68.1 4.4 0.00015 37.0 4.2 33 254-286 26-63 (196)
19 4dmb_A HD domain-containing pr 67.0 9.1 0.00031 36.0 6.2 93 252-360 43-149 (204)
20 3mzo_A LIN2634 protein; HD-dom 64.6 44 0.0015 31.4 10.4 36 252-287 28-73 (216)
21 2dqb_A Deoxyguanosinetriphosph 64.1 5.2 0.00018 41.0 4.2 33 254-286 75-112 (376)
22 3m1t_A Putative phosphohydrola 60.2 78 0.0027 30.0 11.5 33 253-285 104-141 (275)
23 2gz4_A Hypothetical protein AT 59.9 7.6 0.00026 36.7 4.2 35 253-287 54-90 (207)
24 2huo_A Inositol oxygenase; pro 56.2 14 0.00047 36.7 5.4 53 232-284 76-129 (289)
25 2hek_A Hypothetical protein; p 51.3 9.5 0.00032 38.8 3.5 35 253-287 49-89 (371)
26 1xx7_A Oxetanocin-like protein 45.2 19 0.00066 33.0 4.3 36 252-287 35-80 (184)
27 2q14_A Phosphohydrolase; BT420 39.4 13 0.00044 38.5 2.3 33 253-285 54-99 (410)
28 3ssb_I IMPI alpha, inducible m 37.9 4.9 0.00017 27.3 -0.7 15 158-172 11-25 (32)
29 4i1u_A Dephospho-COA kinase; s 36.4 20 0.0007 33.5 3.0 39 261-303 24-65 (210)
30 1ynb_A Hypothetical protein AF 36.1 34 0.0012 31.3 4.4 35 253-287 37-79 (173)
31 3irh_A HD domain protein; phos 35.8 16 0.00054 38.8 2.3 32 254-285 86-137 (480)
32 3gw7_A Uncharacterized protein 35.2 21 0.00071 34.1 2.9 32 256-287 27-63 (239)
33 3bg2_A DGTP triphosphohydrolas 33.9 33 0.0011 35.8 4.4 54 232-285 37-119 (444)
34 3u1n_A SAM domain and HD domai 33.5 18 0.00061 38.8 2.3 32 254-285 65-111 (528)
35 3tm8_A BD1817, uncharacterized 33.4 27 0.00092 34.4 3.5 34 252-285 163-206 (328)
36 3ljc_A ATP-dependent protease 31.9 1.6E+02 0.0055 27.5 8.5 80 351-439 171-250 (252)
37 3thf_A Protein shroom; coiled- 31.4 3.3E+02 0.011 25.5 12.4 102 296-419 45-156 (190)
38 3hug_A RNA polymerase sigma fa 29.9 59 0.002 25.4 4.4 44 400-443 46-91 (92)
39 3bzc_A TEX; helix-turn-helix, 29.8 2.4E+02 0.0081 31.6 10.6 151 292-442 5-193 (785)
40 3kq5_A Hypothetical cytosolic 26.1 1.2E+02 0.004 31.4 6.7 31 255-285 76-116 (393)
41 4a5p_A Protein MXIA, protein V 25.9 33 0.0011 35.2 2.7 122 271-405 173-303 (383)
42 2pgs_A Putative deoxyguanosine 25.8 49 0.0017 34.6 4.0 56 230-285 33-112 (451)
43 3lay_A Zinc resistance-associa 24.3 4.1E+02 0.014 24.2 10.6 78 363-444 66-147 (175)
44 1vqr_A Hypothetical protein CJ 24.0 54 0.0018 31.3 3.7 32 254-285 124-161 (297)
45 2o36_A ThiMet oligopeptidase; 22.6 3E+02 0.01 29.7 9.6 117 289-420 12-134 (674)
46 3hc1_A Uncharacterized HDOD do 22.4 1.6E+02 0.0054 28.2 6.7 33 253-285 117-155 (305)
47 4dnd_A Syntaxin-10, SYN10; str 21.7 88 0.003 27.2 4.3 45 389-435 75-123 (130)
No 1
>1vj7_A Bifunctional RELA/SPOT; HD domain, alpha beta 2-layer sandwich, helix bundle, mangan PPG2':3'P, (P)PPGPP, PPGPP; HET: GDP GPX; 2.10A {Streptococcus dysgalactiae subsp} SCOP: a.211.1.1 d.218.1.8
Probab=100.00 E-value=1.9e-68 Score=550.29 Aligned_cols=244 Identities=38% Similarity=0.533 Sum_probs=217.2
Q ss_pred HHHHHHHHHhhCChhhHHHHHHHHHHHHHHhcCCccccCcchhHHHHHHHHHHHHhcCCHHHHHHHHhhhccccccCCHH
Q 012390 214 AKEFLANAQLKHKIFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYD 293 (464)
Q Consensus 214 ~~~Ll~~~~~~~~~~d~~~l~kAl~fA~~aH~GQ~RksGePYI~HpleVA~ILa~Lg~D~dtIaAALLHDvVEDT~vTlE 293 (464)
+++|+..+..+.+..+.+.+.+|+.||.++|.||+|++|+|||.||++||.||+++++|.++++||||||++|||.+|.+
T Consensus 9 ~~~l~~~~~~~~~~~~~~~l~~A~~~A~~aH~gQ~rksGePYi~Hpl~VA~iLa~l~~D~~~i~AALLHDvvEDt~~t~e 88 (393)
T 1vj7_A 9 GEEVVALAAKYMNETDAAFVKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADLHLDAVTVACGFLHDVVEDTDITLD 88 (393)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCBCTTSCBTTHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHSSCCHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhccCcCCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHhhhHHhcCCCCHH
Confidence 35788888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcHHHHHHHHHhhcccccchHHhhccccchHHHHHHHHHHHhhcc-CchhhHhHHhhHHhhcccccCCCHHHHHH
Q 012390 294 YIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPLCKRQR 372 (464)
Q Consensus 294 eI~e~FG~eVA~LVegVTKl~~l~~~~r~~~~~~~~~qaE~lRkmLLAma-D~RVVLIKLADRLhNMRtL~~lp~eKr~r 372 (464)
+|++.||++||.||+||||+..++...+ ...|+|++|||||+|+ |+||++|||||||||||++..+++++|++
T Consensus 89 ~I~~~FG~~Va~lV~gvTk~~~~~~~~~------~~~qae~~Rkmllam~~D~RvvlIKLADRlhNmRtl~~~~~ek~~~ 162 (393)
T 1vj7_A 89 NIEFDFGKDVRDIVDGVTKLGKVEYKSH------EEQLAENHRKMLMAMSKDIRVILVKLADRLHNMRTLKHLRKDKQER 162 (393)
T ss_dssp HHHHHHCHHHHHHHHHHHHHC--------------------CCSCTTTSCCCHHHHHHHHHHHHHHHHTCC------HHH
T ss_pred HHHHHhCHHHHHHHHHHHhcccCCcccH------HHHHHHHHHHHHHhhcCCcceeeeeHHHHHHccCchhhCChHHHHH
Confidence 9999999999999999999998864221 2357899999999997 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhChHHHHHHHHHHHHhhcChhhHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHCCCceeeeeee
Q 012390 373 FAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECF--DEAMVTSAIEKLEQALKDKNISFLVLCGR 450 (464)
Q Consensus 373 iA~ETl~IYAPLA~RLGI~~lK~ELEDL~Fr~L~Pe~Y~~I~~~L~e~~--re~~I~~~~~~L~~~L~~~gI~~~~V~GR 450 (464)
+|+||++|||||||||||++||||||||||+||+|+.|+.|.++|.+.+ ++.+|+++++.|++.|.+.||.++ |+||
T Consensus 163 iA~Etl~iyaPLA~rLGi~~ik~ELEdl~f~~l~p~~y~~i~~~l~~~r~~r~~~i~~i~~~l~~~L~~~gi~~~-v~~R 241 (393)
T 1vj7_A 163 ISRETMEIYAPLAHRLGISRIKWELEDLAFRYLNETEFYKISHMMNEKRREREALVDDIVTKIKSYTTEQGLFGD-VYGR 241 (393)
T ss_dssp HHHHHHHTHHHHHHHTTCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTCCCE-EEEC
T ss_pred HHHHHHHHHHHHHhhcChhHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceE-EEEE
Confidence 9999999999999999999999999999999999999999999999876 789999999999999999999996 9999
Q ss_pred ccchhHHhHHhhcC
Q 012390 451 HKSLYSIHCKMLKS 464 (464)
Q Consensus 451 ~KhiYSIy~KM~kK 464 (464)
+||+||||+||++|
T Consensus 242 ~K~~~Si~~Km~rk 255 (393)
T 1vj7_A 242 PKHIYSIYRKMRDK 255 (393)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred eCChHHHHHHHHHh
Confidence 99999999999875
No 2
>3nqw_A CG11900; stringent response, pyrophosphohydrolase, HD (histidine and acid) family ,PPGPP hydrolase, hydrolase; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=4e-36 Score=280.10 Aligned_cols=166 Identities=25% Similarity=0.359 Sum_probs=139.5
Q ss_pred hhHHHHHHHHHHHHHHhcCCccc--cCcchhHHHHHHHHHHH-HhcC-CHHHHHHHHhhhccccccCCHHHHHhhhcHHH
Q 012390 228 FREDFVIKAFYEAERAHRGQMRA--SGDPYLLHCVETAMLLA-AIGA-NSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGV 303 (464)
Q Consensus 228 ~d~~~l~kAl~fA~~aH~GQ~Rk--sGePYI~HpleVA~ILa-~Lg~-D~dtIaAALLHDvVEDT~vTlEeI~e~FG~eV 303 (464)
.|.+++.+|+.||.++|.||+|+ +|+|||.||++||.||+ ++|+ |.++++||||||++|||.+|.++|++.||++|
T Consensus 4 ~d~~~l~~A~~~A~~~H~gQ~rk~~~G~pyi~Hpl~VA~ila~~l~~~D~~~i~AAlLHDvvEDt~~t~e~i~~~FG~~V 83 (179)
T 3nqw_A 4 YPSAKFMECLQYAAFKHRQQRRKDPQETPYVNHVINVSTILSVEACITDEGVLMAALLHDVVEDTDASFEDVEKLFGPDV 83 (179)
T ss_dssp CCCHHHHHHHHHHHHHSTTCBCSSSSCCBTHHHHHHHHHHHHTTTCCCCHHHHHHHHTTTHHHHSSCCHHHHHHHHCHHH
T ss_pred ccHHHHHHHHHHHHHHhccCcCCCCCCCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhHHhcCCCCHHHHHHHHCHHH
Confidence 46688999999999999999998 69999999999999999 8998 99999999999999999999999999999999
Q ss_pred HHHHHHhhcccccchHHhhccccchHHHHHHHHHHHhhccCchhhHhHHhhHHhhcccccCCCHHHH-HHHHHHHHHHHH
Q 012390 304 ADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPLCKR-QRFAKETLEIFV 382 (464)
Q Consensus 304 A~LVegVTKl~~l~~~~r~~~~~~~~~qaE~lRkmLLAmaD~RVVLIKLADRLhNMRtL~~lp~eKr-~riA~ETl~IYA 382 (464)
+.||++|||+..+++..+ ...|.+++|+ .|+||++||||||+||||++...+++++ ..-+++....+.
T Consensus 84 a~lV~gvtk~~~~~~~~~------~~~q~e~~r~-----~d~rvvlIKLADRl~NmR~l~~~~~~~~~~~r~~~Y~~~~~ 152 (179)
T 3nqw_A 84 CGLVREVTDDKSLEKQER------KRLQIENAAK-----SSCRAKLIKLADKLDNLRDLQVNTPTGWTQERRDQYFVWAK 152 (179)
T ss_dssp HHHHHHTCCCTTSCHHHH------HHHHHHSSTT-----SCHHHHHHHHHHHHHHHHHHHHSCCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCHHHH------HHHHHHHHHh-----CCHHHHHHHHHHHHHHHHHHhhCCcccccHHHHHHHHHHHH
Confidence 999999999998875433 2345666653 6999999999999999999987766543 233556777777
Q ss_pred HHHhhh--ChHHHHHHHHHHHHhh
Q 012390 383 PLANRL--GISTWKVQLENLCFKH 404 (464)
Q Consensus 383 PLA~RL--GI~~lK~ELEDL~Fr~ 404 (464)
++++.| +-..|..+|.++.-+|
T Consensus 153 ~v~~~l~~~n~~l~~~~~~~~~~~ 176 (179)
T 3nqw_A 153 KVVDNLRGTNANLELKLDEIFRQR 176 (179)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCHHHHHHHHHHHHHc
Confidence 788777 5556777777765543
No 3
>3nr1_A HD domain-containing protein 3; stringent response, pyrophosphohydrolase, HD (histidine and acid) family, PPGPP hydrolase, hydrolase; 1.90A {Homo sapiens}
Probab=100.00 E-value=6.9e-34 Score=264.94 Aligned_cols=145 Identities=32% Similarity=0.428 Sum_probs=123.1
Q ss_pred hHHHHHHHHHHHHHHhcCCcccc--CcchhHHHHHHHHHH-HHhcC-CHHHHHHHHhhhccccccCCHHHHHhhhcHHHH
Q 012390 229 REDFVIKAFYEAERAHRGQMRAS--GDPYLLHCVETAMLL-AAIGA-NSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVA 304 (464)
Q Consensus 229 d~~~l~kAl~fA~~aH~GQ~Rks--GePYI~HpleVA~IL-a~Lg~-D~dtIaAALLHDvVEDT~vTlEeI~e~FG~eVA 304 (464)
|.+++.+|+.||.++|.||+|++ |+|||.||++||.|| .++|+ |.++++||||||++|||.+|.++|++.||++|+
T Consensus 3 d~~~l~~A~~~A~~aH~gQ~rk~~~G~PYi~Hpl~VA~il~~~~~~~d~~~i~AALLHDvvEDt~~t~e~i~~~FG~~Va 82 (178)
T 3nr1_A 3 EAAQLLEAADFAARKHRQQRRKDPEGTPYINHPIGVARILTHEAGITDIVVLQAALLHDTVEDTDTTLDEVELHFGAQVR 82 (178)
T ss_dssp HHHHHHHHHHHHHHHTTTCBCSSTTCCBTTHHHHHHHHHHHHTSCCCCHHHHHHHHHTTHHHHSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccCcCCCCCCCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhHHhcCCCCHHHHHHHHCHHHH
Confidence 56889999999999999999986 999999999999999 57996 999999999999999999999999999999999
Q ss_pred HHHHHhhcccccchHHhhccccchHHHHHHHHHHHhhccCchhhHhHHhhHHhhcccccCCCH-----HHHHHHHHHHHH
Q 012390 305 DLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPL-----CKRQRFAKETLE 379 (464)
Q Consensus 305 ~LVegVTKl~~l~~~~r~~~~~~~~~qaE~lRkmLLAmaD~RVVLIKLADRLhNMRtL~~lp~-----eKr~riA~ETl~ 379 (464)
.||++|||+..+++..+ ...|.+++| ..|+||++|||||||||||++...++ ++.++|-+|...
T Consensus 83 ~lV~gvTk~~~~~~~~~------~~~q~e~~~-----~~d~rvvlIKLADRl~NmR~l~~~~~~~~~~~r~~~Y~~~~~~ 151 (178)
T 3nr1_A 83 RLVEEVTDDKTLPKLER------KRLQVEQAP-----HSSPGAKLVKLADKLYNLRDLNRCTPEGWSEHRVQEYFEWAAQ 151 (178)
T ss_dssp HHHHHTCCCTTSCHHHH------HHHHHHHGG-----GSCHHHHHHHHHHHHHHHHHHHHCCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccchhhH------HHHHHHHHH-----hCCchhHHHHHHHHHHHHHHhhhCCccccCHHHHHHHHHHHHH
Confidence 99999999998875433 234566653 35999999999999999999876544 445566666666
Q ss_pred HHHHH
Q 012390 380 IFVPL 384 (464)
Q Consensus 380 IYAPL 384 (464)
|..-|
T Consensus 152 v~~~l 156 (178)
T 3nr1_A 152 VVKGL 156 (178)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55543
No 4
>3l9d_A SMU.1046C, putative GTP pyrophosphokinase; transferase; 2.48A {Streptococcus mutans}
Probab=99.12 E-value=1.4e-11 Score=120.79 Aligned_cols=73 Identities=16% Similarity=0.184 Sum_probs=40.1
Q ss_pred HHHHHHHhhhChHHHHHHHHHHHHhhcChhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHCCCceeeeeeeccchhHHh
Q 012390 379 EIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIH 458 (464)
Q Consensus 379 ~IYAPLA~RLGI~~lK~ELEDL~Fr~L~Pe~Y~~I~~~L~e~~re~~I~~~~~~L~~~L~~~gI~~~~V~GR~KhiYSIy 458 (464)
.||||||+||||.++|+|+|++.+.|. ..+++|..+|+. +.+.+...+...+|. .|+||+|++||||
T Consensus 19 ~i~apla~~lg~~~~~~~~~~~~~~Y~--~a~~el~~kl~~---------l~~e~~~~~~~~~i~--~V~~RvKs~~SI~ 85 (255)
T 3l9d_A 19 SHMASMTGGQQMGRGSMNWEEFLDPYI--QAVGELKIKFRG---------IRKQFRKQKRHSPIE--FVTGRVKPIESIK 85 (255)
T ss_dssp ----------------CCHHHHTHHHH--HHHHHHHHHHHH---------HHHHHHHTTSCCSCC--EEEEEECCHHHHH
T ss_pred cchHhhhhHhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHH---------HHHHHHHhhccCCcc--eEEeEEcCHHHHH
Confidence 699999999999999999999988765 355555554432 333344444556666 3999999999999
Q ss_pred HHhhcC
Q 012390 459 CKMLKS 464 (464)
Q Consensus 459 ~KM~kK 464 (464)
+||++|
T Consensus 86 ~Km~Rk 91 (255)
T 3l9d_A 86 EKMVLR 91 (255)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 999875
No 5
>2be3_A GTP pyrophosphokinase; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG, transferase; HET: PG4; 2.40A {Streptococcus pneumoniae} SCOP: d.218.1.8
Probab=95.78 E-value=0.007 Score=58.05 Aligned_cols=19 Identities=37% Similarity=0.475 Sum_probs=17.3
Q ss_pred eeeeeccchhHHhHHhhcC
Q 012390 446 VLCGRHKSLYSIHCKMLKS 464 (464)
Q Consensus 446 ~V~GR~KhiYSIy~KM~kK 464 (464)
.|+||+|++||||+||++|
T Consensus 44 ~v~~RvK~~~Si~~K~~rk 62 (226)
T 2be3_A 44 FVTGRVKPIESIKEKMARR 62 (226)
T ss_dssp EEEEEECCHHHHHHHHHHH
T ss_pred eEEeeCCCHHHHHHHHHhh
Confidence 3999999999999999874
No 6
>3b57_A LIN1889 protein; Q92AN1, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 3.00A {Listeria innocua CLIP11262} SCOP: a.211.1.1
Probab=94.92 E-value=0.14 Score=47.66 Aligned_cols=55 Identities=16% Similarity=0.102 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHhcCCccccCcchhHHHHHHHHHHHH----hcCCHH-HHHHHHhhhccccc
Q 012390 231 DFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAA----IGANST-VVAAGLLHDTLDDA 288 (464)
Q Consensus 231 ~~l~kAl~fA~~aH~GQ~RksGePYI~HpleVA~ILa~----Lg~D~d-tIaAALLHDvVEDT 288 (464)
+++.++.++..+...+. ....-+.|.+.|+.+... .+.|.+ +.+||||||+....
T Consensus 5 ~li~~~~~~v~~~~~~~---~~~H~~~H~~rV~~~a~~ia~~~~~d~~~v~~AAlLHDig~~~ 64 (209)
T 3b57_A 5 EIILSAKNWMHSHFENE---TTGHDWSHIKRVWKLSKEIQSKEGGDLFTIELAALFHDYSDIK 64 (209)
T ss_dssp HHHHHHHHHHHTTC---------CCHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHTTCCC--
T ss_pred HHHHHHHHHHHHHHhcC---CCCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhccCccc
Confidence 45666666666654421 122338999999876654 367865 45899999997653
No 7
>2pq7_A Predicted HD superfamily hydrolase; 104161995, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Uncultured thermotogales bacterium} SCOP: a.211.1.1
Probab=94.85 E-value=0.38 Score=44.67 Aligned_cols=50 Identities=14% Similarity=0.012 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhcCCccccCcchhHHHHHHHHHHHH----hcCCHH-HHHHHHhhhc
Q 012390 232 FVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAA----IGANST-VVAAGLLHDT 284 (464)
Q Consensus 232 ~l~kAl~fA~~aH~GQ~RksGePYI~HpleVA~ILa~----Lg~D~d-tIaAALLHDv 284 (464)
.+.++.++..+...+. .....+.|.+.|+.+... .+.|.+ +.+||||||+
T Consensus 14 l~~~~~~~v~~~~~~~---~~~h~~~H~~rV~~~a~~la~~~~~d~~~l~~AaLLHDI 68 (220)
T 2pq7_A 14 LREILNIVREAFKDYD---DPAHDISHTFRVMENASEIASREKCDLQKAIIAALLHDI 68 (220)
T ss_dssp HHHHHHHHHHHHTTCC---CTTTSHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhcC---CCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHcC
Confidence 3456666766655421 233457999999876543 466754 5689999999
No 8
>3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} SCOP: a.211.1.1
Probab=94.42 E-value=0.25 Score=46.96 Aligned_cols=55 Identities=18% Similarity=0.169 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHhcCCccccCcchhHHHHHHHHHHHH----hcCCHH-HHHHHHhhhcccc
Q 012390 230 EDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAA----IGANST-VVAAGLLHDTLDD 287 (464)
Q Consensus 230 ~~~l~kAl~fA~~aH~GQ~RksGePYI~HpleVA~ILa~----Lg~D~d-tIaAALLHDvVED 287 (464)
.++|+++.+|+.+.+.+. .+..-+.|...|+.+... .+.|.+ +.+||||||+...
T Consensus 4 ~~~i~~~~~~v~~~l~~~---~~~H~~~H~~rV~~~a~~ia~~~~~d~~~l~~AalLHDig~~ 63 (223)
T 3dto_A 4 QAILQSAEAWVKKQLMDE---YSGHDWYHIRRVTLMAKAIGEQEKVDVFVVQIAALFHDLIDD 63 (223)
T ss_dssp HHHHHHHHHHHHHTTTTC-------CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHSTTC-
T ss_pred HHHHHHHHHHHHHHhhcC---CCCCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccc
Confidence 467888899998887653 233458999998775543 367755 5578999999853
No 9
>2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactobacillus plantarum WCFS1} SCOP: a.211.1.1
Probab=94.24 E-value=0.23 Score=47.05 Aligned_cols=57 Identities=23% Similarity=0.146 Sum_probs=38.7
Q ss_pred hhhHHHHHHHHHHHHHHhcCCccccCcchhHHHHHHHHHHHH----hcCCHHH-HHHHHhhhccc
Q 012390 227 IFREDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAA----IGANSTV-VAAGLLHDTLD 286 (464)
Q Consensus 227 ~~d~~~l~kAl~fA~~aH~GQ~RksGePYI~HpleVA~ILa~----Lg~D~dt-IaAALLHDvVE 286 (464)
..+.+++.++.++..+...++. ...-+.|.+.|+..... .+.|.+. .+||||||+..
T Consensus 6 ~~~~~~i~~~~~~v~~~~~~~~---~~H~~~H~~rV~~~a~~ia~~~~~d~~ll~lAAlLHDigk 67 (231)
T 2pjq_A 6 MITETQLTAIQTYALQKLAHDH---SGHGRDHLQRVNRLARRLAKDEGANLNLTLAAAWLHDVID 67 (231)
T ss_dssp CCCHHHHHHHHHHHHTSSTTCC---SSCSHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHC
T ss_pred CcCHHHHHHHHHHHHHHHhccC---CCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHcCCc
Confidence 3455677777777776655321 22348999999876654 3678665 58999999985
No 10
>2qgs_A Protein Se1688; alpha-helical protein, structural genomics, PSI-2, protein S initiative, northeast structural genomics consortium; 2.00A {Staphylococcus epidermidis} SCOP: a.211.1.1
Probab=94.20 E-value=0.37 Score=45.35 Aligned_cols=54 Identities=20% Similarity=0.193 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHhcCCccccCcchhHHHHHHHHHHHHh-----cCCH-HHHHHHHhhhcccc
Q 012390 231 DFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAI-----GANS-TVVAAGLLHDTLDD 287 (464)
Q Consensus 231 ~~l~kAl~fA~~aH~GQ~RksGePYI~HpleVA~ILa~L-----g~D~-dtIaAALLHDvVED 287 (464)
+++.++.++..+...++ ....-+.|.+.|+.....+ +.|. .+.+||||||+...
T Consensus 5 ~li~~~~~~v~~~~~~~---~~~H~~~H~~rV~~~a~~i~a~~~~~d~~~l~lAAlLHDigk~ 64 (225)
T 2qgs_A 5 MKIKKAYEYMKSFHQHD---TTGHDIAHVERVYNNACYIAKRENITDTLVIELSSLLHDTVDS 64 (225)
T ss_dssp HHHHHHHHHHHHHTTTC---SSCHHHHHHHHHHHHHHHHHHHTTCSCCHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHHHHHhcC---CCccCHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHcCCCC
Confidence 45677777777765532 1233579999998875433 5564 45689999999874
No 11
>3djb_A Hydrolase, HD family; all alpha-helical protein., structural genomics, PSI-2, protein structure initiative; 2.90A {Bacillus thuringiensis serovarkonkukian} SCOP: a.211.1.1
Probab=93.98 E-value=0.32 Score=46.19 Aligned_cols=55 Identities=18% Similarity=0.241 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHhcCCccccCcchhHHHHHHHHHHHHh----cCCHH-HHHHHHhhhcccc
Q 012390 230 EDFVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAI----GANST-VVAAGLLHDTLDD 287 (464)
Q Consensus 230 ~~~l~kAl~fA~~aH~GQ~RksGePYI~HpleVA~ILa~L----g~D~d-tIaAALLHDvVED 287 (464)
.++|+++.+|+.+.+.+. .+..-+.|.+.|+.+...+ +.|.+ +.+||||||+...
T Consensus 4 ~~~i~~~~~~v~~~l~~~---~~~H~~~H~~rV~~~a~~ia~~~~~d~~~l~~AAlLHDig~~ 63 (223)
T 3djb_A 4 QEKIEKTITFVKHILEKD---ASGHDWYHIRRVHKMAISLSEQEGGNRFIIEMAALLHDVADE 63 (223)
T ss_dssp HHHHHHHHHHHHHHTTSS---SCTTTHHHHHHHHHHHHHHHTTTCSCHHHHHHHHTTHHHHC-
T ss_pred HHHHHHHHHHHHHHhhcC---CCcCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccc
Confidence 467888999998887654 2335589999998866654 56755 5578999999863
No 12
>2paq_A 5'-deoxynucleotidase YFBR; HD domain phosphoh structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; 2.10A {Escherichia coli} SCOP: a.211.1.1 PDB: 2par_A* 2pau_A*
Probab=91.95 E-value=0.55 Score=43.91 Aligned_cols=95 Identities=19% Similarity=0.196 Sum_probs=53.5
Q ss_pred CcchhHHHHHHHHHHHHh----------cCCH-HHHHHHHhhhccccc--cC--CH----HHHHhhhcHHHHHHHHHhhc
Q 012390 252 GDPYLLHCVETAMLLAAI----------GANS-TVVAAGLLHDTLDDA--FL--SY----DYIFRTFGAGVADLVEGVSK 312 (464)
Q Consensus 252 GePYI~HpleVA~ILa~L----------g~D~-dtIaAALLHDvVEDT--~v--Tl----EeI~e~FG~eVA~LVegVTK 312 (464)
++.-..|.++||.+...+ ++|. -++.+|||||+.|-- ++ .. .++.+.+++.=..+++.+..
T Consensus 29 ~EnVaeHS~~VA~lA~~la~~~~~~~~~~vD~~~~~~~aLlHDi~E~~~GDi~~p~k~~~~~~~~~~~~~E~~~~~~i~~ 108 (201)
T 2paq_A 29 TENVSEHSLQVAMVAHALAAIKNRKFGGNVNAERIALLAMYHDASEVLTGDLPTPVKYFNSQIAQEYKAIEKIAQQKLVD 108 (201)
T ss_dssp CCBHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHTTTTHHHHCCCCCC---------CTHHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHHHHHhhhHHhcCcccCHHHHHHHHHhcccccccCCCCCchHhhhchHHHHHhcccHHHHHHHHHH
Confidence 577889999998754332 3564 567789999998742 11 11 24444454432233333322
Q ss_pred ccccchHHhhccccchHHHHHHHHHHHhhcc--CchhhHhHHhhHHhhc
Q 012390 313 LSQLSKLARENNTASKTVEADRLHTMFLAMA--DARAVLIKLADRLHNM 359 (464)
Q Consensus 313 l~~l~~~~r~~~~~~~~~qaE~lRkmLLAma--D~RVVLIKLADRLhNM 359 (464)
. ++. .+.+.++.+..... .+.+.+||.||+|.-+
T Consensus 109 ~--Lp~-----------~~~~e~~~l~~e~e~~t~ea~lvk~aD~l~a~ 144 (201)
T 2paq_A 109 M--VPE-----------ELRDIFAPLIDEHAYSDEEKSLVKQADALCAY 144 (201)
T ss_dssp T--SCG-----------GGHHHHHHHHTTTSCCHHHHHHHHHHHHHHHH
T ss_pred h--CCH-----------HHHHHHHHHHhcccCCCHHHHHHHHHHHHHHH
Confidence 1 121 11344555544432 4679999999999877
No 13
>2ibn_A Inositol oxygenase; reductase, DIIRON, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: MSE I1N; 1.50A {Homo sapiens} SCOP: a.211.1.4
Probab=85.42 E-value=0.88 Score=44.37 Aligned_cols=54 Identities=20% Similarity=0.108 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHhcCCccccCcchhHHHHHHHHHHHHhcCC-HHHHHHHHhhhcc
Q 012390 232 FVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGAN-STVVAAGLLHDTL 285 (464)
Q Consensus 232 ~l~kAl~fA~~aH~GQ~RksGePYI~HpleVA~ILa~Lg~D-~dtIaAALLHDvV 285 (464)
.|.+|++.-.......-.....|-+.|++++|+...+-|.| .-.++||||||+=
T Consensus 37 ti~ea~~~Ln~lvDeSDPD~~v~ql~HaLQTAe~ar~dg~d~dw~~laaLlHDLG 91 (250)
T 2ibn_A 37 TVMEAVDLLDGLVDESDPDVDFPNSFHAFQTAEGIRKAHPDKDWFHLVGLLHDLG 91 (250)
T ss_dssp CHHHHHHHGGGCCCTTC---CCCHHHHHHHHHHHHHHHSTTCHHHHHHHHHTTGG
T ss_pred cHHHHHHHHHHhcCCcCCCCcccHHHHHHHHHHHHHHhCcChhHHHHHHHHhccH
Confidence 36666666555544432233567799999999999999998 5566999999974
No 14
>2o08_A BH1327 protein; putative HD superfamily hydrolase, structural genomics, JOIN for structural genomics, JCSG; HET: UNL PG4 DGI; 1.90A {Bacillus halodurans}
Probab=70.57 E-value=3.6 Score=37.14 Aligned_cols=33 Identities=18% Similarity=0.210 Sum_probs=24.5
Q ss_pred chhHHHHHHHHHHHH----hcCCH-HHHHHHHhhhccc
Q 012390 254 PYLLHCVETAMLLAA----IGANS-TVVAAGLLHDTLD 286 (464)
Q Consensus 254 PYI~HpleVA~ILa~----Lg~D~-dtIaAALLHDvVE 286 (464)
..+.|.+.||.+... +|+|+ ...+||||||+=.
T Consensus 18 ~~~~Hs~~Va~~A~~lA~~~g~~~~~~~~agLLHDIGk 55 (188)
T 2o08_A 18 HRYQHTIGVMETAIDLAKLYGADQQKAELAAIFHDYAK 55 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC
Confidence 457899999875543 57875 4568999999754
No 15
>3kh1_A Predicted metal-dependent phosphohydrolase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.37A {Magnetospirillum magnetotacticum ms-1}
Probab=70.55 E-value=10 Score=35.57 Aligned_cols=116 Identities=13% Similarity=0.049 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHhc--CCcccc-------CcchhHHHHHHHHHHHHh------cCCH-HHHHHHHhhhccccc--cCCH
Q 012390 231 DFVIKAFYEAERAHR--GQMRAS-------GDPYLLHCVETAMLLAAI------GANS-TVVAAGLLHDTLDDA--FLSY 292 (464)
Q Consensus 231 ~~l~kAl~fA~~aH~--GQ~Rks-------GePYI~HpleVA~ILa~L------g~D~-dtIaAALLHDvVEDT--~vTl 292 (464)
+.+.+-+.|....++ .+.|.+ .+.--.|...||.+..-+ ++|. -++..||+||+.|-- +++.
T Consensus 8 ~~l~~~~~Fl~~~~~LK~i~R~~~~~~~~r~EsVAeHS~~vAliA~~la~~~~~~vd~~r~~~maL~HDl~E~~tGDi~~ 87 (200)
T 3kh1_A 8 SRLAAQMSFVVEIDKLKTILRQTLLTDSSRRENDAEHSWHIATMAFLLAEYADEAVQIGRVARMLLIHDIVEIDAGDTFI 87 (200)
T ss_dssp HHHHHHHHHHHHGGGGGGCEEEEECTTSSSEEEHHHHHHHHHHHHHHTGGGSCTTCCHHHHHHHHHHTTTTHHHHCCCCT
T ss_pred HHHHHHHHHHHHHHhhCcCCcCCCcCCCCCCccHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHhcChHHHHhCCccc
Confidence 345555666555542 222321 255678999998764432 2674 678899999999852 2221
Q ss_pred -H-HHHhhhcHHHHHHHHHhhcccccchHHhhccccchHHHHHHHHHHHhhc---cCchhhHhHHhhHHhhc
Q 012390 293 -D-YIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAM---ADARAVLIKLADRLHNM 359 (464)
Q Consensus 293 -E-eI~e~FG~eVA~LVegVTKl~~l~~~~r~~~~~~~~~qaE~lRkmLLAm---aD~RVVLIKLADRLhNM 359 (464)
+ ...+.+-..=...++.+.. .++. .+.+.++.++... ..+.+.+||-+|+|.-+
T Consensus 88 ~~~~~~~~~~~~E~~A~~~l~~--~LP~-----------~~~~e~~~Lw~EyE~~~t~Ea~~vK~~Dkl~~~ 146 (200)
T 3kh1_A 88 HDEAGNEDKEERERKAAARLFG--LLPP-----------DQAAEYSALWQEYEARETADARFADALDRLQPL 146 (200)
T ss_dssp TCCC---CHHHHHHHHHHHHHT--TSCH-----------HHHHHHHHHHHHHHHTCSHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHH--hCCh-----------HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 0 0111111000111222211 1221 1234455555444 26789999999999844
No 16
>3ccg_A HD superfamily hydrolase; NP_347894.1, HD domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.50A {Clostridium acetobutylicum atcc 824}
Probab=70.50 E-value=3.7 Score=37.19 Aligned_cols=32 Identities=19% Similarity=0.227 Sum_probs=23.9
Q ss_pred hhHHHHHHHHHHHH----hcCCH-HHHHHHHhhhccc
Q 012390 255 YLLHCVETAMLLAA----IGANS-TVVAAGLLHDTLD 286 (464)
Q Consensus 255 YI~HpleVA~ILa~----Lg~D~-dtIaAALLHDvVE 286 (464)
.+.|.+.||.+... +|+|+ ...+||||||+=.
T Consensus 20 ~~~Hs~~Va~~A~~lA~~~g~d~~~~~~AgLLHDiGk 56 (190)
T 3ccg_A 20 RYKHSLGVMDTAVRLAGIYNEDTEKARIAGLVHDCAK 56 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC
Confidence 47899999875543 57875 4568999999854
No 17
>2cqz_A 177AA long hypothetical protein; hypothetical proteins, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii}
Probab=68.90 E-value=4.4 Score=36.79 Aligned_cols=35 Identities=14% Similarity=0.229 Sum_probs=26.3
Q ss_pred cchhHHHHHHHHHH---HH------hcCCHH-HHHHHHhhhcccc
Q 012390 253 DPYLLHCVETAMLL---AA------IGANST-VVAAGLLHDTLDD 287 (464)
Q Consensus 253 ePYI~HpleVA~IL---a~------Lg~D~d-tIaAALLHDvVED 287 (464)
+.-..|.+.||.+. +. -+.|.+ ++.+|||||+.|.
T Consensus 31 esvaeHs~rVa~~A~~la~~~~~~~~~~d~~~v~~~aLlHD~~E~ 75 (177)
T 2cqz_A 31 ESIADHSFGVAFITLVLADVLEKRGKRIDVEKALKMAIVHDLAEA 75 (177)
T ss_dssp CBHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTTHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhchHHH
Confidence 56788999998765 33 356766 5789999999864
No 18
>2ogi_A Hypothetical protein SAG1661; structural genomics, joint center for structural genomics, J protein structure initiative; HET: GDP MES; 1.85A {Streptococcus agalactiae serogroup V}
Probab=68.05 E-value=4.4 Score=36.98 Aligned_cols=33 Identities=21% Similarity=0.192 Sum_probs=24.4
Q ss_pred chhHHHHHHHHHHH----HhcCCH-HHHHHHHhhhccc
Q 012390 254 PYLLHCVETAMLLA----AIGANS-TVVAAGLLHDTLD 286 (464)
Q Consensus 254 PYI~HpleVA~ILa----~Lg~D~-dtIaAALLHDvVE 286 (464)
..+.|.+.||.+.. .+|.|+ ...+||||||+=.
T Consensus 26 ~~~~Hs~~Va~~A~~lA~~~g~d~~~~~~AgLLHDIGK 63 (196)
T 2ogi_A 26 KRFNHVLGVERAAIELAERYGYDKEKAGLAALLHDYAK 63 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHcCC
Confidence 35789999987654 357875 4568999999854
No 19
>4dmb_A HD domain-containing protein 2; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium (NESG); HET: MSE GOL; 1.90A {Homo sapiens}
Probab=66.99 E-value=9.1 Score=36.01 Aligned_cols=93 Identities=15% Similarity=0.169 Sum_probs=53.8
Q ss_pred CcchhHHHHHHHHHHHHhc---CCH-HHHHHHHhhhccccc--cCCHHHHHhhhcHHHH-----HHHHHhhcccccchHH
Q 012390 252 GDPYLLHCVETAMLLAAIG---ANS-TVVAAGLLHDTLDDA--FLSYDYIFRTFGAGVA-----DLVEGVSKLSQLSKLA 320 (464)
Q Consensus 252 GePYI~HpleVA~ILa~Lg---~D~-dtIaAALLHDvVEDT--~vTlEeI~e~FG~eVA-----~LVegVTKl~~l~~~~ 320 (464)
.+.--.|...||.+..-+. +|. .++..||+||+.|-- +++.- +..+.+.- ..++.+. ..++.
T Consensus 43 ~ESVAEHS~~vAliA~~l~~~~vD~~r~~~maL~HDl~E~~tGDitp~---k~~~~~~k~~~E~~A~~~l~--~~LP~-- 115 (204)
T 4dmb_A 43 PESVSDHMYRMAVMAMVIKDDRLNKDRCVRLALVHDMAECIVGDIAPA---DNIPKEEKHRREEEAMKQIT--QLLPE-- 115 (204)
T ss_dssp CCBHHHHHHHHHHHHHHSCCTTSCHHHHHHHHHHTTTTHHHHCCCCGG---GCCCHHHHHHHHHHHHHHHH--TTSCH--
T ss_pred CCcHHHHHHHHHHHHHHHccccCCHHHHHHHHHhcchHHhhcCCCccc---cccchhhhHHHHHHHHHHHH--HhCCH--
Confidence 3667899999997665543 674 677899999999852 33321 01111110 1111111 11221
Q ss_pred hhccccchHHHHHHHHHHHhhc---cCchhhHhHHhhHHhhcc
Q 012390 321 RENNTASKTVEADRLHTMFLAM---ADARAVLIKLADRLHNMM 360 (464)
Q Consensus 321 r~~~~~~~~~qaE~lRkmLLAm---aD~RVVLIKLADRLhNMR 360 (464)
.+.+.++.++... ..+.+.+||-+|+|.-+-
T Consensus 116 ---------~~~~e~~~Lw~Eye~~~t~Ea~~vK~aDkle~ll 149 (204)
T 4dmb_A 116 ---------DLRKELYELWEEYETQSSAEAKFVKQLDQCEMIL 149 (204)
T ss_dssp ---------HHHHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 1234566665544 257899999999998774
No 20
>3mzo_A LIN2634 protein; HD-domain phosphohydrolase, structural genomics, joint cente structural genomics, JCSG, protein structure initiative; HET: MSE; 1.98A {Listeria innocua}
Probab=64.55 E-value=44 Score=31.42 Aligned_cols=36 Identities=17% Similarity=0.145 Sum_probs=26.0
Q ss_pred CcchhHHHHHHHHHHHHh-------c--CCH-HHHHHHHhhhcccc
Q 012390 252 GDPYLLHCVETAMLLAAI-------G--ANS-TVVAAGLLHDTLDD 287 (464)
Q Consensus 252 GePYI~HpleVA~ILa~L-------g--~D~-dtIaAALLHDvVED 287 (464)
.+.--.|.+.||.+..-+ + +|. .++..||+||+.|-
T Consensus 28 ~EsvAeHS~~vA~iA~~La~~~~~~~~~vD~~r~~~maL~HDl~E~ 73 (216)
T 3mzo_A 28 EHSVAEHSYKVTSIAQFFGAVEEDAGNEVNWRALYEKALNHDYSEL 73 (216)
T ss_dssp CCBHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTTGGGG
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHccHHHH
Confidence 356778999998654332 2 564 56789999999985
No 21
>2dqb_A Deoxyguanosinetriphosphate triphosphohydrolase, P; dntpase, DNTP, single-stranded DNA, DNA dGTPase, HD superfamily, structural genomics; 2.20A {Thermus thermophilus}
Probab=64.12 E-value=5.2 Score=40.99 Aligned_cols=33 Identities=33% Similarity=0.368 Sum_probs=25.1
Q ss_pred chhHHHHHHHHHHH----HhcCCHHH-HHHHHhhhccc
Q 012390 254 PYLLHCVETAMLLA----AIGANSTV-VAAGLLHDTLD 286 (464)
Q Consensus 254 PYI~HpleVA~ILa----~Lg~D~dt-IaAALLHDvVE 286 (464)
.-+.|.++||.+.. .+|++++. -+||||||+=.
T Consensus 75 tRl~HSl~Va~iar~ia~~l~l~~~l~~~a~LlHDiGh 112 (376)
T 2dqb_A 75 TRLTHTLEVAQVSRSIARALGLNEDLTEAIALSHDLGH 112 (376)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHTTTTC
T ss_pred cHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCC
Confidence 45799999998654 47788654 47899999853
No 22
>3m1t_A Putative phosphohydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE GOL; 1.62A {Shewanella amazonensis} SCOP: a.211.1.0
Probab=60.15 E-value=78 Score=30.00 Aligned_cols=33 Identities=18% Similarity=0.334 Sum_probs=24.8
Q ss_pred cchhHHHHHHHHHHHH----hcCCH-HHHHHHHhhhcc
Q 012390 253 DPYLLHCVETAMLLAA----IGANS-TVVAAGLLHDTL 285 (464)
Q Consensus 253 ePYI~HpleVA~ILa~----Lg~D~-dtIaAALLHDvV 285 (464)
..++.|.+.||.+... ++.+. +...||||||+=
T Consensus 104 ~~~~~hs~~~a~~a~~la~~~~~~~~~~~~agLLhdiG 141 (275)
T 3m1t_A 104 ADFWGNTFEVAIICQELAKRLGTLPEEAFTCGILHSIG 141 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHcc
Confidence 4588999999876553 46664 567899999973
No 23
>2gz4_A Hypothetical protein ATU1052; structural genomics, PSI, protein structure initiative; 1.50A {Agrobacterium tumefaciens} SCOP: a.211.1.1
Probab=59.95 E-value=7.6 Score=36.70 Aligned_cols=35 Identities=23% Similarity=0.392 Sum_probs=28.4
Q ss_pred cchhHHHHHHHHHHHHh--cCCHHHHHHHHhhhcccc
Q 012390 253 DPYLLHCVETAMLLAAI--GANSTVVAAGLLHDTLDD 287 (464)
Q Consensus 253 ePYI~HpleVA~ILa~L--g~D~dtIaAALLHDvVED 287 (464)
+..-.|.+.||.+...+ +.|...+.+||+||+.|-
T Consensus 54 eSVAeHS~~va~ia~~l~~~~~~r~~~~aL~HD~~E~ 90 (207)
T 2gz4_A 54 FTVAQHCLIVETIFCRMCPGATPDEMQMALLHDAPEY 90 (207)
T ss_dssp CBHHHHHHHHHHHHHHHCTTCCHHHHHHHHTTTTTHH
T ss_pred ccHHHHHHHHHHHHHHHCCCCCHHHHHHHHhcCchHh
Confidence 56679999999876644 457789999999999885
No 24
>2huo_A Inositol oxygenase; protein-substrate complex, HD domain fold, oxidoreductase; HET: INS; 2.00A {Mus musculus} SCOP: a.211.1.4 PDB: 3bxd_A*
Probab=56.18 E-value=14 Score=36.68 Aligned_cols=53 Identities=19% Similarity=0.138 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHhcCCccccCcchhHHHHHHHHHHHHhcCC-HHHHHHHHhhhc
Q 012390 232 FVIKAFYEAERAHRGQMRASGDPYLLHCVETAMLLAAIGAN-STVVAAGLLHDT 284 (464)
Q Consensus 232 ~l~kAl~fA~~aH~GQ~RksGePYI~HpleVA~ILa~Lg~D-~dtIaAALLHDv 284 (464)
.|.+|++.-.......-.....|-|.|++++|+.+.+-+-+ .=...+||+||+
T Consensus 76 tIweA~e~Ln~LvDeSDPD~dl~qi~H~lQTAEaiR~d~pp~dW~qLtGLiHDL 129 (289)
T 2huo_A 76 TIMEAVGMLDDLVDESDPDVDFPNSFHAFQTAEGIRKAHPDKDWFHLVGLLHDL 129 (289)
T ss_dssp CHHHHHHHGGGCCCSSCTTCCSCHHHHHHHHHHHHHHHCTTCHHHHHHHHHTTG
T ss_pred cHHHHHHHHHHhcCCcCCccchhHHHHHHHHHHHHHHhCCCcchheeeeecccc
Confidence 46677776655555543345678899999999999988877 556789999997
No 25
>2hek_A Hypothetical protein; predominantly alpha helical protein with GDP binding site AN site being FAR from EACH other, structural genomics, PSI; HET: GDP; 2.00A {Aquifex aeolicus} SCOP: a.211.1.1
Probab=51.34 E-value=9.5 Score=38.79 Aligned_cols=35 Identities=23% Similarity=0.266 Sum_probs=26.5
Q ss_pred cchhHHHHHHHHHHH----HhcCCH--HHHHHHHhhhcccc
Q 012390 253 DPYLLHCVETAMLLA----AIGANS--TVVAAGLLHDTLDD 287 (464)
Q Consensus 253 ePYI~HpleVA~ILa----~Lg~D~--dtIaAALLHDvVED 287 (464)
...+.|.+.||.+.. .++.|. .+.+||||||+-.-
T Consensus 49 ~~r~~Hsl~V~~~a~~ia~~~~~~~~~~~~~AaLLHDiG~~ 89 (371)
T 2hek_A 49 HTRFEHSLGVYHITERICESLKVKEKELVKLAGLLHDLGHP 89 (371)
T ss_dssp CBHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHHHTTTTTCC
T ss_pred CChhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcc
Confidence 456899999987554 356764 57789999998653
No 26
>1xx7_A Oxetanocin-like protein; PSI, secsg, protein structure initiative, southeast collaboratory for structural genomics; 2.26A {Pyrococcus furiosus} SCOP: a.211.1.1
Probab=45.22 E-value=19 Score=33.03 Aligned_cols=36 Identities=17% Similarity=0.285 Sum_probs=26.9
Q ss_pred CcchhHHHHHHHHH---HHH------hcCCHH-HHHHHHhhhcccc
Q 012390 252 GDPYLLHCVETAML---LAA------IGANST-VVAAGLLHDTLDD 287 (464)
Q Consensus 252 GePYI~HpleVA~I---La~------Lg~D~d-tIaAALLHDvVED 287 (464)
.+.-..|.+.||.+ |+. -++|.+ ++..||+||+.|-
T Consensus 35 ~EsvAeHS~~vA~ia~~la~~~~~~~~~~d~~r~~~~aL~HDl~E~ 80 (184)
T 1xx7_A 35 PESVADHSYRVAFITLLLAEELKKKGVEIDVEKALKIAIIHDLGEA 80 (184)
T ss_dssp CCBHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTTHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHcCcHHh
Confidence 35677899998874 344 357875 7889999999874
No 27
>2q14_A Phosphohydrolase; BT4208, HD domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE ADP; 2.20A {Bacteroides thetaiotaomicron vpi-5482}
Probab=39.42 E-value=13 Score=38.50 Aligned_cols=33 Identities=27% Similarity=0.271 Sum_probs=23.7
Q ss_pred cchhHHHHHHHHHHHH----hc-----CC----HHHHHHHHhhhcc
Q 012390 253 DPYLLHCVETAMLLAA----IG-----AN----STVVAAGLLHDTL 285 (464)
Q Consensus 253 ePYI~HpleVA~ILa~----Lg-----~D----~dtIaAALLHDvV 285 (464)
..-+.|.++|+.+... ++ ++ ..+.+||||||+=
T Consensus 54 htRf~HSLgV~~la~~l~~~l~~~~~~~~~~d~~~~~~AaLlHDiG 99 (410)
T 2q14_A 54 HTRFQHSLGAFYLMSEAITQLTSKGNFIFDSEAEAVQAAILLHDIG 99 (410)
T ss_dssp CBHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTTT
T ss_pred CCeeehHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccC
Confidence 3568999999886654 33 23 3457899999984
No 28
>3ssb_I IMPI alpha, inducible metalloproteinase inhibitor protein; thermolysin fold - family I8 fold, metalloprotease thermoLys inhibitor; 1.80A {Galleria mellonella}
Probab=37.88 E-value=4.9 Score=27.27 Aligned_cols=15 Identities=27% Similarity=0.853 Sum_probs=12.5
Q ss_pred hhHhhhhhcccccCC
Q 012390 158 NGFVRNALGSCVDYD 172 (464)
Q Consensus 158 ~~~~~~~~~~~~~~~ 172 (464)
.|||||.-|.||--+
T Consensus 11 ~G~vrn~~G~CV~~~ 25 (32)
T 3ssb_I 11 DGYARDVNGKCIPIK 25 (32)
T ss_dssp TTEEECTTSCEEEGG
T ss_pred CCcEECCCCCEECHH
Confidence 699999999998543
No 29
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=36.38 E-value=20 Score=33.46 Aligned_cols=39 Identities=36% Similarity=0.414 Sum_probs=32.3
Q ss_pred HHHHHHHHhcC---CHHHHHHHHhhhccccccCCHHHHHhhhcHHH
Q 012390 261 ETAMLLAAIGA---NSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGV 303 (464)
Q Consensus 261 eVA~ILa~Lg~---D~dtIaAALLHDvVEDT~vTlEeI~e~FG~eV 303 (464)
.|+.+|+++|. |.|.++ |++++.....+++|.+.||++|
T Consensus 24 tv~~~l~~~g~~vidaD~ia----~~l~~~~~~~~~~i~~~fG~~~ 65 (210)
T 4i1u_A 24 TVADLFAARGASLVDTDLIA----HRITAPAGLAMPAIEQTFGPAF 65 (210)
T ss_dssp HHHHHHHHTTCEEEEHHHHH----HHHTSTTCTTHHHHHHHHCGGG
T ss_pred HHHHHHHHCCCcEEECcHHH----HHHhcCCcHHHHHHHHHhChhh
Confidence 35777888885 788877 8889888889999999999886
No 30
>1ynb_A Hypothetical protein AF1432; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 1.76A {Archaeoglobus fulgidus} SCOP: a.211.1.1 PDB: 1yoy_A
Probab=36.09 E-value=34 Score=31.28 Aligned_cols=35 Identities=26% Similarity=0.388 Sum_probs=26.3
Q ss_pred cchhHHHHHHHHH---HHH-hcCCH----HHHHHHHhhhcccc
Q 012390 253 DPYLLHCVETAML---LAA-IGANS----TVVAAGLLHDTLDD 287 (464)
Q Consensus 253 ePYI~HpleVA~I---La~-Lg~D~----dtIaAALLHDvVED 287 (464)
+.--.|...||.+ |+. .++|. .++..||+||+.|-
T Consensus 37 EsVAeHS~~vA~iA~~la~~~~vd~~~~~r~~~maL~HDl~E~ 79 (173)
T 1ynb_A 37 ESVAEHNFRAAIIAFILALKSGESVEKACKAATAALFHDLHEA 79 (173)
T ss_dssp CBHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTTHH
T ss_pred CcHHHHHHHHHHHHHHHhhhcCCChhHHHHHHHHHHHcchHHh
Confidence 5567899999887 554 46676 45678999999874
No 31
>3irh_A HD domain protein; phosphohydrolase, dntpase, structural genomics, P protein structure initiative, midwest center for structural genomics; HET: DGT DTP; 2.40A {Enterococcus faecalis} PDB: 2o6i_A*
Probab=35.79 E-value=16 Score=38.77 Aligned_cols=32 Identities=25% Similarity=0.244 Sum_probs=21.8
Q ss_pred chhHHHHHHHHHHHHhc----------------CCH----HHHHHHHhhhcc
Q 012390 254 PYLLHCVETAMLLAAIG----------------ANS----TVVAAGLLHDTL 285 (464)
Q Consensus 254 PYI~HpleVA~ILa~Lg----------------~D~----dtIaAALLHDvV 285 (464)
.-+.|.++|+.+...++ .+. .+.+||||||+=
T Consensus 86 TRf~HSLgV~~la~~i~~~l~~~~~~~~~~~~~~~~~~~~~v~~AaLlHDIG 137 (480)
T 3irh_A 86 SRFSHSLGVYEITRRICEIFQRNYSVERLGENGWNDDERLITLCAALLHDVG 137 (480)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHHSBHHHHGGGSBCGGGHHHHHHHHHHTTTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhCccccccccCCCHHHHHHHHHHHHHhccC
Confidence 45899999988665321 221 246899999973
No 32
>3gw7_A Uncharacterized protein YEDJ; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Escherichia coli k-12}
Probab=35.24 E-value=21 Score=34.08 Aligned_cols=32 Identities=13% Similarity=0.175 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHh----cCCH-HHHHHHHhhhcccc
Q 012390 256 LLHCVETAMLLAAI----GANS-TVVAAGLLHDTLDD 287 (464)
Q Consensus 256 I~HpleVA~ILa~L----g~D~-dtIaAALLHDvVED 287 (464)
+.|.+.|+.+...+ +.|. .+.+||||||+...
T Consensus 27 ~~H~~rV~~~a~~ia~~~~~d~~~~~~AalLHDig~~ 63 (239)
T 3gw7_A 27 VCHFRRVWATAQKLAADDDVDMLVILTACYFHDIVSL 63 (239)
T ss_dssp CCHHHHHHHHHHHHTTTSCSCTTHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccc
Confidence 78999998877665 3453 56689999999764
No 33
>3bg2_A DGTP triphosphohydrolase; structural genomics, NYSGXRC, target 10395N, triphosphohydro PSI-2, protein structure initiative; 1.95A {Leeuwenhoekiella blandensis}
Probab=33.94 E-value=33 Score=35.84 Aligned_cols=54 Identities=22% Similarity=0.209 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhcCCccccC-----cchhHHHHHHHHHHHH----hcC---------------C-----HHHHHHHHhh
Q 012390 232 FVIKAFYEAERAHRGQMRASG-----DPYLLHCVETAMLLAA----IGA---------------N-----STVVAAGLLH 282 (464)
Q Consensus 232 ~l~kAl~fA~~aH~GQ~RksG-----ePYI~HpleVA~ILa~----Lg~---------------D-----~dtIaAALLH 282 (464)
+|...-.|=.-.+.-|.-..+ ..-+.|.++|+.+... ++. . .-+.+|||+|
T Consensus 37 rii~s~~frRL~~ktQv~~~~~~~~~htRltHSL~V~~iar~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~lv~~a~L~H 116 (444)
T 3bg2_A 37 RIIFSAPFRSLQDKTQVIPLSKTDFVHTRLTHSLEVSVVGRSLGRMVGKKLLEKYPHLEQVYGYKFNDFGAIVAAAALAH 116 (444)
T ss_dssp HHHHSHHHHHGGGCBCSCC---CCCCCBHHHHHHHHHHHHHHHHHHHHHHHHHHSTHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred HHhCCHHHhhhccCCccCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHhc
Confidence 344444443334555653222 2358999999876653 221 1 2355899999
Q ss_pred hcc
Q 012390 283 DTL 285 (464)
Q Consensus 283 DvV 285 (464)
|+=
T Consensus 117 DiG 119 (444)
T 3bg2_A 117 DIG 119 (444)
T ss_dssp TTT
T ss_pred ccC
Confidence 973
No 34
>3u1n_A SAM domain and HD domain-containing protein 1; deoxynucleotide triphosphohydrolase, hydrolase; 3.10A {Homo sapiens}
Probab=33.52 E-value=18 Score=38.80 Aligned_cols=32 Identities=25% Similarity=0.258 Sum_probs=22.1
Q ss_pred chhHHHHHHHHHHHHhc-----------CCH----HHHHHHHhhhcc
Q 012390 254 PYLLHCVETAMLLAAIG-----------ANS----TVVAAGLLHDTL 285 (464)
Q Consensus 254 PYI~HpleVA~ILa~Lg-----------~D~----dtIaAALLHDvV 285 (464)
.-+.|.++|+.+...++ .+. .+.+||||||+=
T Consensus 65 TRf~HSLgV~~la~~i~~~l~~~~~~~~~~~~d~~~v~~AaLlHDiG 111 (528)
T 3u1n_A 65 NRFEHSLGVGYLAGCLVHALGEKQPELQISERDVLCVQIAGLCHDLG 111 (528)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhCcccCCCHHHHHHHHHHHHHhccC
Confidence 45899999987665432 222 256799999973
No 35
>3tm8_A BD1817, uncharacterized protein; HD-GYP, phosphodiesterase, unknown function, hydrolase,signa protein; 1.28A {Bdellovibrio bacteriovorus} PDB: 3tmb_A 3tmc_A 3tmd_A
Probab=33.36 E-value=27 Score=34.38 Aligned_cols=34 Identities=29% Similarity=0.315 Sum_probs=23.5
Q ss_pred Ccch-hHHHHHHHHHHHH----hcCCH----H-HHHHHHhhhcc
Q 012390 252 GDPY-LLHCVETAMLLAA----IGANS----T-VVAAGLLHDTL 285 (464)
Q Consensus 252 GePY-I~HpleVA~ILa~----Lg~D~----d-tIaAALLHDvV 285 (464)
..+| ..|.+.||.+... +|++. . ...||||||+=
T Consensus 163 ~~~~~~~Hs~~Va~la~~la~~lgl~~~~~~~~l~~aaLLHDIG 206 (328)
T 3tm8_A 163 TDKTISHHGVTVSTLSIALAQKLGITDPKKTQLLTLGALLHDYG 206 (328)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTGG
T ss_pred cCchHHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHhcCC
Confidence 3455 4799999876553 56653 2 44699999984
No 36
>3ljc_A ATP-dependent protease LA; LON N-domain, allosteric enzyme, ATP-binding, DNA-binding, H nucleotide-binding, serine protease, stress respo; 2.60A {Escherichia coli}
Probab=31.88 E-value=1.6e+02 Score=27.48 Aligned_cols=80 Identities=15% Similarity=0.257 Sum_probs=45.8
Q ss_pred HHhhHHhhcccccCCCHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHhhcChhhHHHHHHHHHHHhHHHHHHHHH
Q 012390 351 KLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFDEAMVTSAI 430 (464)
Q Consensus 351 KLADRLhNMRtL~~lp~eKr~riA~ETl~IYAPLA~RLGI~~lK~ELEDL~Fr~L~Pe~Y~~I~~~L~e~~re~~I~~~~ 430 (464)
+|||++...-. ++.++++++- |+.++-.-|-.- +.-|+.|+|-+-++ -+.-++++..+++..||-|+.+-+
T Consensus 171 ~Lad~ia~~l~---l~~~eKQ~LL-e~~d~~~Rl~~l--~~lL~~e~e~~~l~---~~I~~~v~~~~~k~Qrey~LrEQl 241 (252)
T 3ljc_A 171 RLADTIAAHMP---LKLADKQSVL-EMSDVNERLEYL--MAMMESEIDLLQVE---KRIRNRVKKQMEKSQREYYLNEQM 241 (252)
T ss_dssp HHHHHHHHTSC---CCHHHHHHHH-HCCCHHHHHHHH--HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC---CCHHHHHHHH-hcCCHHHHHHHH--HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777765532 3454444432 222222211111 12356666666553 244456666777777899999999
Q ss_pred HHHHHHHHH
Q 012390 431 EKLEQALKD 439 (464)
Q Consensus 431 ~~L~~~L~~ 439 (464)
..|+++|-+
T Consensus 242 k~IqkELGe 250 (252)
T 3ljc_A 242 KAIQKELGE 250 (252)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHhCC
Confidence 999999864
No 37
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=31.42 E-value=3.3e+02 Score=25.45 Aligned_cols=102 Identities=18% Similarity=0.237 Sum_probs=54.1
Q ss_pred HhhhcHHHHHHHHHhhcccccchHHhhccccchHHHHHHHHHHHhhccCchhhHhHHhhHHhhccc-ccCCCHHH-----
Q 012390 296 FRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNMMT-LDALPLCK----- 369 (464)
Q Consensus 296 ~e~FG~eVA~LVegVTKl~~l~~~~r~~~~~~~~~qaE~lRkmLLAmaD~RVVLIKLADRLhNMRt-L~~lp~eK----- 369 (464)
.+.+|.+|..+|..+.+... .+.|+...-...-+--+|..|+-||....+ |...+.++
T Consensus 45 N~~lG~~vea~V~~~c~P~E----------------~eKy~~FigDLekVv~LLLsLs~RLaRvenaL~~~~~Er~sL~~ 108 (190)
T 3thf_A 45 NDRLGQDLFAKLAEKVRPSE----------------ASKFRTHVDAVGNITSLLLSLSERLAQTESSLETRQQERGALES 108 (190)
T ss_dssp HHHHHHHHHHHHHHHSCHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHhhHHH----------------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHccChhHHHHHHH
Confidence 34599999999999877543 344442211111123457888888887764 33322222
Q ss_pred -HHHHH---HHHHHHHHHHHhhhChHHHHHHHHHHHHhhcChhhHHHHHHHHHH
Q 012390 370 -RQRFA---KETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVE 419 (464)
Q Consensus 370 -r~riA---~ETl~IYAPLA~RLGI~~lK~ELEDL~Fr~L~Pe~Y~~I~~~L~e 419 (464)
+..+. .|+.++=.-+..| -..+-++-.+||.++++..-...+..
T Consensus 109 K~~~L~~Q~EDAkeLKe~ldRR------e~~V~~iL~~~L~~eql~DY~~fv~m 156 (190)
T 3thf_A 109 KRDLLYEQMEEAQRLKSDIERR------GVSIAGLLAKNLSADMCADYDYFINM 156 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 11111 1222222222222 23344566889999998665555443
No 38
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=29.89 E-value=59 Score=25.43 Aligned_cols=44 Identities=9% Similarity=0.067 Sum_probs=32.3
Q ss_pred HHHhhcChhhHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHCCCc
Q 012390 400 LCFKHLNPDQHTELSSKLVECF--DEAMVTSAIEKLEQALKDKNIS 443 (464)
Q Consensus 400 L~Fr~L~Pe~Y~~I~~~L~e~~--re~~I~~~~~~L~~~L~~~gI~ 443 (464)
+.++|++--.|++|+..|.-+. -...+..++.+|++.|.+.|++
T Consensus 46 l~l~~~~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l~~~~~~ 91 (92)
T 3hug_A 46 IQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVT 91 (92)
T ss_dssp HHHHHTSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3355677778889999886554 3456788899999999887753
No 39
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=29.79 E-value=2.4e+02 Score=31.59 Aligned_cols=151 Identities=13% Similarity=0.148 Sum_probs=0.0
Q ss_pred HHHHHhhhc---------HHHHHHHHHhhcccccchHHhhccccchHHHHHHHHHHHhhccCchhhHhHHhhHHhhcccc
Q 012390 292 YDYIFRTFG---------AGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNMMTL 362 (464)
Q Consensus 292 lEeI~e~FG---------~eVA~LVegVTKl~~l~~~~r~~~~~~~~~qaE~lRkmLLAmaD~RVVLIKLADRLhNMRtL 362 (464)
.+.|.++++ ..|...|+-+..-..++...|-+.........+.||++.-.....|-+.=|-..-+..+...
T Consensus 5 ~~~~a~~l~~~~~~~~~~~~v~~~~~ll~eg~tVPFIarYRKe~tg~Ld~~~lr~i~~~~~~~~~L~~Rk~~il~~i~~q 84 (785)
T 3bzc_A 5 NTRIAEELSALPSGRVQPQQVAAAVALLDEGSTVPFIARYRKEVTGSLDDTQLRMLEERLRYLRELEERRGAILASIEEQ 84 (785)
T ss_dssp HHHHHHHHTTSTTCCCCHHHHHHHHHHHHTTCCHHHHHHHCHHHHTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCcccccCcCHHHHHHHHHHHhCCCCCCchHHhhhHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q ss_pred cCCCHHHHHHHH-----HHHHHHHHHH----------HhhhChHHHHHHH--------HHHHHhhcChh-hHHHHHHHHH
Q 012390 363 DALPLCKRQRFA-----KETLEIFVPL----------ANRLGISTWKVQL--------ENLCFKHLNPD-QHTELSSKLV 418 (464)
Q Consensus 363 ~~lp~eKr~riA-----~ETl~IYAPL----------A~RLGI~~lK~EL--------EDL~Fr~L~Pe-~Y~~I~~~L~ 418 (464)
..++++-+..+. .|.-++|.|. |...||..+..-| |+++-+|++++ .+......|.
T Consensus 85 g~lt~~l~~~i~~a~t~~eleDly~pyk~krrtka~~a~e~GLeplA~~l~~~~~~~p~~~A~~~v~~~~~~~~~~~al~ 164 (785)
T 3bzc_A 85 GKLTPELARDIKLADTKTRLEDLYLPYKQKRRTKGQIALEAGLGALADALFDDPTLVPESEAARFVDAEKGFADVKAVLE 164 (785)
T ss_dssp TCCCHHHHHHHHHCCSHHHHHHHHGGGSCCCCCHHHHHHHTTTHHHHHHHHHCTTSCHHHHHHTTCCSSSSCCSHHHHHH
T ss_pred cCCCHHHHHHHHhcCcHHHHHHHHhccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCHHHHHHHHhCcccCCCCHHHHHH
Q ss_pred HHhH--HHHH---HHHHHHHHHHHHHCCC
Q 012390 419 ECFD--EAMV---TSAIEKLEQALKDKNI 442 (464)
Q Consensus 419 e~~r--e~~I---~~~~~~L~~~L~~~gI 442 (464)
.-++ -+.| ..+++.|++.+.+.|+
T Consensus 165 ga~~ilae~is~~~~~r~~~R~~~~~~~~ 193 (785)
T 3bzc_A 165 GAKYILMERFAEDATLLDKLRVFMKNEAT 193 (785)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCE
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhCeE
No 40
>3kq5_A Hypothetical cytosolic protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Coxiella burnetii}
Probab=26.10 E-value=1.2e+02 Score=31.45 Aligned_cols=31 Identities=16% Similarity=0.135 Sum_probs=20.9
Q ss_pred hhHHHHH-HHHHHHHh------cCCH---HHHHHHHhhhcc
Q 012390 255 YLLHCVE-TAMLLAAI------GANS---TVVAAGLLHDTL 285 (464)
Q Consensus 255 YI~Hple-VA~ILa~L------g~D~---dtIaAALLHDvV 285 (464)
.+.|.++ |+.....+ +.++ .+++||||||+=
T Consensus 76 LLeHtLerVa~~A~~l~~~YP~~~~~Er~~l~~aALLHDIG 116 (393)
T 3kq5_A 76 LMNEGLLRGVNSLNHYIQNHPEATPLERYALFSAGLLLEVA 116 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhccc
Confidence 5789999 86655432 1211 467899999974
No 41
>4a5p_A Protein MXIA, protein VIRH; protein transport, type three secretion, export apparatus; HET: MLY; 3.15A {Shigella flexneri}
Probab=25.90 E-value=33 Score=35.18 Aligned_cols=122 Identities=10% Similarity=0.074 Sum_probs=73.0
Q ss_pred CCHHHHHHHHhhhcccccc---CCHHHHHh---hhcHHHHHHHHHhhcccccchHHhhccccchHHHHHHHHHHH---hh
Q 012390 271 ANSTVVAAGLLHDTLDDAF---LSYDYIFR---TFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMF---LA 341 (464)
Q Consensus 271 ~D~dtIaAALLHDvVEDT~---vTlEeI~e---~FG~eVA~LVegVTKl~~l~~~~r~~~~~~~~~qaE~lRkmL---LA 341 (464)
.|+.+++|.-|..++.... ++.+|++. ...++--+||+.+.+.-.+.. -.+-+|++| +.
T Consensus 173 vd~~tViaTHLsevik~~a~ellg~QEvq~LLd~L~~~~P~LVeEl~~~l~l~~------------i~~VLq~LL~E~Vs 240 (383)
T 4a5p_A 173 XSAQDEFYHQLSQALLNNINEIFGIQETKNMLDQFENRYPDLLXEVFRHVTIQR------------ISEVLQRLLGENIS 240 (383)
T ss_dssp BCHHHHHHHHHHHHHHTTGGGTSCHHHHHHHHHHHHTTCHHHHHHHHTTCCHHH------------HHHHHHHHHTTTCC
T ss_pred CCHHHHHHHHHHHHHHHhHHHHhCHHHHHHHHHHHHHhChHHHHHHHccCCHHH------------HHHHHHHHHhCCCC
Confidence 4888888888888887653 55555333 233333445555543222221 124566665 22
Q ss_pred ccCchhhHhHHhhHHhhcccccCCCHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHhhc
Q 012390 342 MADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHL 405 (464)
Q Consensus 342 maD~RVVLIKLADRLhNMRtL~~lp~eKr~riA~ETl~IYAPLA~RLGI~~lK~ELEDL~Fr~L 405 (464)
+-|.|.++=-|||.-..-++...+...-|+++++....-|++= +.|-+..|-.++|++-...+
T Consensus 241 IRdlrtIlEtLae~a~~~kD~~~LtE~VR~aL~R~I~~~~~~~-~~L~vi~L~p~lE~~l~~si 303 (383)
T 4a5p_A 241 VRNLKLIMESLALWAPREXDVITLVEHVRASLSRYICSKIAVS-GEIXVVMLSGYIEDAIRXGI 303 (383)
T ss_dssp CSCHHHHHHHHHHHTTTCCCHHHHHHHHHHHTHHHHHHHHCBT-TEEEEEECCHHHHHHHHHTE
T ss_pred cccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhCCC-CeEEEEEeCHHHHHHHHHHh
Confidence 3488888888888876666655665666777877555445443 44556677778887755443
No 42
>2pgs_A Putative deoxyguanosinetriphosphate triphosphohyd; deoxyguanosinetriphosphate triphsphohydrolase, pseudomonas S PV. phaseolicola 1448A; 2.35A {Pseudomonas syringae PV}
Probab=25.78 E-value=49 Score=34.56 Aligned_cols=56 Identities=21% Similarity=0.192 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHhcCCccccCc-----chhHHHHHHHHHHHH----hcC--C-------------HHHHHHHHhhhcc
Q 012390 230 EDFVIKAFYEAERAHRGQMRASGD-----PYLLHCVETAMLLAA----IGA--N-------------STVVAAGLLHDTL 285 (464)
Q Consensus 230 ~~~l~kAl~fA~~aH~GQ~RksGe-----PYI~HpleVA~ILa~----Lg~--D-------------~dtIaAALLHDvV 285 (464)
.++|...-.|=.-.+.-|.-.... .-+.|.++|+.+... ++. + .-+.+|||+||+=
T Consensus 33 ~~rii~s~~frRL~~~tQv~~~~~~~~~htR~~Hsl~v~~ia~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~a~L~HDiG 112 (451)
T 2pgs_A 33 HDRIIFSGAFRRLGRKTQVHPVSSNDHIHTRLTHSLEVSCVGRSLGMRVGETLRAALPDWCDPSDLGMVVQSACLAHDIG 112 (451)
T ss_dssp HHHHHHSHHHHGGGGCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHTGGGSCTTCCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHhCCHHHhhhccCCcccCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHhhccC
Confidence 334444444444456666532222 248999999987653 221 1 1466899999973
No 43
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=24.30 E-value=4.1e+02 Score=24.19 Aligned_cols=78 Identities=9% Similarity=0.040 Sum_probs=42.0
Q ss_pred cCCCHHHHHHHH---HHHHHHHHHHHhhhChHHHHHHHHHHHHh-hcChhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 012390 363 DALPLCKRQRFA---KETLEIFVPLANRLGISTWKVQLENLCFK-HLNPDQHTELSSKLVECFDEAMVTSAIEKLEQALK 438 (464)
Q Consensus 363 ~~lp~eKr~riA---~ETl~IYAPLA~RLGI~~lK~ELEDL~Fr-~L~Pe~Y~~I~~~L~e~~re~~I~~~~~~L~~~L~ 438 (464)
-.+++|+|+++- +|...--.|| |--+...+.||.+|... -.+++.-+.+.+.+.+.+ .-+.......+..|+
T Consensus 66 LnLT~EQq~ql~~I~~e~r~~~~~L--r~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr--~qL~~~R~k~~~em~ 141 (175)
T 3lay_A 66 SPLTTEQQATAQKIYDDYYTQTSAL--RQQLISKRYEYNALLTASSPDTAKINAVAKEMESLG--QKLDEQRVKRDVAMA 141 (175)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 347777765542 2233223333 44577888999998874 223333344444433332 223445556777888
Q ss_pred HCCCce
Q 012390 439 DKNISF 444 (464)
Q Consensus 439 ~~gI~~ 444 (464)
++||..
T Consensus 142 KeGip~ 147 (175)
T 3lay_A 142 QAGIPR 147 (175)
T ss_dssp HTTCC-
T ss_pred HhCCCC
Confidence 889963
No 44
>1vqr_A Hypothetical protein CJ0248; HD-domain/pdease-like fold, structural genomics, joint cente structural genomics, JCSG; 2.25A {Campylobacter jejuni subsp} SCOP: a.211.1.3
Probab=24.00 E-value=54 Score=31.34 Aligned_cols=32 Identities=22% Similarity=0.228 Sum_probs=23.2
Q ss_pred chhHHHHHHHHHHHHhcC-----C-HHHHHHHHhhhcc
Q 012390 254 PYLLHCVETAMLLAAIGA-----N-STVVAAGLLHDTL 285 (464)
Q Consensus 254 PYI~HpleVA~ILa~Lg~-----D-~dtIaAALLHDvV 285 (464)
.++.|.+.||.+...+.. + .....||||||+=
T Consensus 124 ~~~~hs~~va~~a~~la~~~~~~~~e~a~~aGLLHDIG 161 (297)
T 1vqr_A 124 NFLKTCNEEATFIANWLNDEDKKLSHLLVPCAMLLRLG 161 (297)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHcc
Confidence 367899998887766531 2 3567899999973
No 45
>2o36_A ThiMet oligopeptidase; thermolysin-like domain, substrate-binding channel, hydrolase; 1.95A {Homo sapiens} PDB: 1s4b_P
Probab=22.56 E-value=3e+02 Score=29.65 Aligned_cols=117 Identities=11% Similarity=-0.008 Sum_probs=63.1
Q ss_pred cCCHHHHHhhhcHHHHHHHHHhhcccc-cchHHhhccccchHHHHHHHHHHHhhccCchhhHhHHhhHHhhcccccCCCH
Q 012390 289 FLSYDYIFRTFGAGVADLVEGVSKLSQ-LSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPL 367 (464)
Q Consensus 289 ~vTlEeI~e~FG~eVA~LVegVTKl~~-l~~~~r~~~~~~~~~qaE~lRkmLLAmaD~RVVLIKLADRLhNMRtL~~lp~ 367 (464)
.++.+++...|-..+...-+.+.++.. .... +.+.+.+.++.+....+=++.+-.+.++..... +
T Consensus 12 ~~~~~~~~~a~~~~~~~~~~~i~~i~~~~~~~-------------~~~~~~l~~le~~~~~l~~~~~~~~~~~~~~~~-~ 77 (674)
T 2o36_A 12 DLSAQQIEERTRELIEQTKRVYDQVGTQEFED-------------VSYESTLKALADVEVTYTVQRNILDFPQHVSPS-K 77 (674)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHTCCGGG-------------CCTTTTHHHHHHHHHHHHHHHHHHHSHHHHCSC-H
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHccCCCC-------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-H
Confidence 467788887777766655555544432 2100 011111222223344556666666666664444 3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhC----hHHHHHHHHHHH-HhhcChhhHHHHHHHHHHH
Q 012390 368 CKRQRFAKETLEIFVPLANRLG----ISTWKVQLENLC-FKHLNPDQHTELSSKLVEC 420 (464)
Q Consensus 368 eKr~riA~ETl~IYAPLA~RLG----I~~lK~ELEDL~-Fr~L~Pe~Y~~I~~~L~e~ 420 (464)
+.+..+.|+...+.-+.+.++ +++...++.+-. +..|.|++.+-+...|++-
T Consensus 78 -~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~e~~~~~~~~l~~f 134 (674)
T 2o36_A 78 -DIRTASTEADKKLSEFDVEMSMREDVYQRIVWLQEKVQKDSLRPEAARYLERLIKLG 134 (674)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSCTTCSCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcccccccCCHHHHHHHHHHHHHH
Confidence 446777788777777676665 332222222111 2368899887777776654
No 46
>3hc1_A Uncharacterized HDOD domain protein; HDOD domain protein with unknown function, STRU genomics, joint center for structural genomics; 1.90A {Geobacter sulfurreducens}
Probab=22.36 E-value=1.6e+02 Score=28.24 Aligned_cols=33 Identities=33% Similarity=0.397 Sum_probs=24.2
Q ss_pred cchhHHHHHHHHHHHH----hcC-C-HHHHHHHHhhhcc
Q 012390 253 DPYLLHCVETAMLLAA----IGA-N-STVVAAGLLHDTL 285 (464)
Q Consensus 253 ePYI~HpleVA~ILa~----Lg~-D-~dtIaAALLHDvV 285 (464)
..++.|.+.||.+... ++. + .....||||||+=
T Consensus 117 ~~~~~hs~~va~~a~~la~~~~~~~~~~~~~agllHDIG 155 (305)
T 3hc1_A 117 STLWAHSLGVARIAKLIAERTGFLNPVNVYVAGLLHDVG 155 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhh
Confidence 3568999999876553 455 4 4567899999974
No 47
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=21.73 E-value=88 Score=27.25 Aligned_cols=45 Identities=20% Similarity=0.212 Sum_probs=27.8
Q ss_pred ChHHHHHHHHHHHHhh----cChhhHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 012390 389 GISTWKVQLENLCFKH----LNPDQHTELSSKLVECFDEAMVTSAIEKLEQ 435 (464)
Q Consensus 389 GI~~lK~ELEDL~Fr~----L~Pe~Y~~I~~~L~e~~re~~I~~~~~~L~~ 435 (464)
.+..|+|+||||--.+ -+|..|. |... +-..|..+|..+..+|.+
T Consensus 75 ~l~sie~dLeDLe~sI~ivE~np~kF~-l~~~-Ei~~Rr~fV~~~r~~I~~ 123 (130)
T 4dnd_A 75 GLRSIEWDLEDLEETIGIVEANPGKFK-LPAG-DLQERKVFVERMREAVQE 123 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHC-CCHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHhcC-CCHH-HHHHHHHHHHHHHHHHHH
Confidence 4568999999997332 4777773 3322 112366777766666654
Done!