Query 012393
Match_columns 464
No_of_seqs 58 out of 60
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 02:10:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012393.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012393hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00261 Tropomyosin: Tropomyo 99.0 1.9E-07 4E-12 89.5 23.3 231 41-317 2-232 (237)
2 PRK02224 chromosome segregatio 98.7 0.00022 4.8E-09 78.4 36.9 283 12-317 190-496 (880)
3 TIGR02169 SMC_prok_A chromosom 98.7 0.00019 4.2E-09 79.4 36.0 55 3-57 151-208 (1164)
4 TIGR02168 SMC_prok_B chromosom 98.5 0.00029 6.2E-09 77.6 30.8 201 136-336 797-1005(1179)
5 TIGR02169 SMC_prok_A chromosom 98.5 0.0056 1.2E-07 68.1 43.2 24 420-443 1098-1122(1164)
6 COG1196 Smc Chromosome segrega 98.4 0.0005 1.1E-08 79.2 32.6 191 161-358 798-1007(1163)
7 PF00261 Tropomyosin: Tropomyo 98.3 0.00011 2.5E-09 70.5 19.5 138 72-213 82-219 (237)
8 TIGR02168 SMC_prok_B chromosom 98.3 0.0016 3.4E-08 71.9 30.3 65 49-113 679-743 (1179)
9 KOG0161 Myosin class II heavy 98.2 0.0036 7.8E-08 75.8 34.9 277 78-367 1508-1875(1930)
10 PRK02224 chromosome segregatio 98.1 0.028 6E-07 62.3 42.8 34 34-67 371-404 (880)
11 TIGR00606 rad50 rad50. This fa 98.1 0.032 6.9E-07 65.4 38.0 107 132-245 826-935 (1311)
12 COG1196 Smc Chromosome segrega 98.0 0.014 3.1E-07 67.5 32.4 49 272-320 946-994 (1163)
13 KOG0996 Structural maintenance 97.9 0.045 9.8E-07 63.9 34.4 308 40-376 288-620 (1293)
14 PHA02562 46 endonuclease subun 97.9 0.0081 1.7E-07 62.7 25.8 102 219-320 299-403 (562)
15 KOG0161 Myosin class II heavy 97.8 0.17 3.7E-06 62.1 37.4 134 221-361 1064-1208(1930)
16 PF10174 Cast: RIM-binding pro 97.7 0.022 4.8E-07 64.2 26.9 207 133-342 341-608 (775)
17 KOG0971 Microtubule-associated 97.7 0.029 6.3E-07 64.2 27.2 214 92-310 220-476 (1243)
18 TIGR00606 rad50 rad50. This fa 97.6 0.075 1.6E-06 62.4 29.9 37 127-163 743-779 (1311)
19 PF00038 Filament: Intermediat 97.5 0.077 1.7E-06 52.0 23.9 40 327-366 254-294 (312)
20 KOG0976 Rho/Rac1-interacting s 97.3 0.12 2.6E-06 58.9 26.1 269 54-347 34-335 (1265)
21 KOG4674 Uncharacterized conser 97.3 0.34 7.4E-06 59.2 31.3 243 19-283 654-934 (1822)
22 KOG4674 Uncharacterized conser 97.3 0.31 6.8E-06 59.5 30.4 316 23-367 802-1131(1822)
23 PF07888 CALCOCO1: Calcium bin 97.2 0.48 1E-05 52.1 29.1 81 18-98 156-236 (546)
24 PRK04778 septation ring format 97.2 0.13 2.7E-06 55.7 23.8 197 34-245 166-374 (569)
25 PF12718 Tropomyosin_1: Tropom 97.1 0.011 2.3E-07 53.9 13.0 128 173-314 3-140 (143)
26 PF07888 CALCOCO1: Calcium bin 96.9 0.9 2E-05 50.0 32.2 280 24-320 141-434 (546)
27 PF06160 EzrA: Septation ring 96.9 0.48 1E-05 51.4 25.1 118 127-246 251-371 (560)
28 PF00038 Filament: Intermediat 96.9 0.53 1.2E-05 46.2 23.9 244 24-306 52-307 (312)
29 PLN02939 transferase, transfer 96.8 0.054 1.2E-06 62.6 17.4 200 117-348 153-368 (977)
30 PRK04863 mukB cell division pr 96.7 2.3 5E-05 51.6 35.0 59 1-59 275-333 (1486)
31 KOG1003 Actin filament-coating 96.7 0.27 5.9E-06 48.0 19.1 143 131-315 56-198 (205)
32 PF10174 Cast: RIM-binding pro 96.7 1.8 3.8E-05 49.5 33.5 186 126-314 299-497 (775)
33 PF01576 Myosin_tail_1: Myosin 96.5 0.00059 1.3E-08 76.8 0.0 205 137-354 576-804 (859)
34 PF14915 CCDC144C: CCDC144C pr 96.5 0.33 7.1E-06 49.9 19.2 97 253-366 192-288 (305)
35 KOG0996 Structural maintenance 96.4 2.2 4.8E-05 50.7 26.5 243 38-315 332-596 (1293)
36 KOG1003 Actin filament-coating 96.3 0.38 8.1E-06 47.1 17.4 174 35-212 6-186 (205)
37 PF12128 DUF3584: Protein of u 96.3 3.5 7.6E-05 48.7 36.0 157 53-212 475-677 (1201)
38 PHA02562 46 endonuclease subun 96.2 1.5 3.3E-05 46.0 22.8 85 128-212 299-386 (562)
39 PF05557 MAD: Mitotic checkpoi 96.2 0.0013 2.7E-08 72.3 0.0 182 164-367 224-424 (722)
40 KOG0971 Microtubule-associated 95.9 4.3 9.4E-05 47.5 25.7 63 163-237 424-486 (1243)
41 KOG0933 Structural maintenance 95.9 1.1 2.5E-05 52.3 21.2 140 127-273 733-890 (1174)
42 PF09726 Macoilin: Transmembra 95.9 1 2.2E-05 50.7 20.6 60 294-353 592-654 (697)
43 PF09787 Golgin_A5: Golgin sub 95.8 3.4 7.3E-05 44.5 28.6 102 151-269 230-335 (511)
44 KOG0612 Rho-associated, coiled 95.7 6.4 0.00014 47.2 26.5 101 174-274 543-650 (1317)
45 PF12718 Tropomyosin_1: Tropom 95.7 0.65 1.4E-05 42.5 15.3 33 127-159 34-66 (143)
46 KOG0933 Structural maintenance 95.7 2.3 5E-05 50.0 22.6 165 128-314 294-466 (1174)
47 PF01576 Myosin_tail_1: Myosin 95.7 0.003 6.5E-08 71.3 0.0 169 138-313 288-457 (859)
48 PRK03918 chromosome segregatio 95.6 4.8 0.0001 44.8 35.1 19 295-313 458-476 (880)
49 PRK04863 mukB cell division pr 95.6 5.3 0.00012 48.7 26.3 226 80-315 205-461 (1486)
50 KOG0977 Nuclear envelope prote 95.6 2.8 6E-05 46.4 22.0 267 24-307 90-388 (546)
51 KOG0994 Extracellular matrix g 95.6 5.5 0.00012 47.8 25.1 81 12-92 1454-1535(1758)
52 PRK03918 chromosome segregatio 95.4 5.6 0.00012 44.3 41.9 49 164-212 550-599 (880)
53 KOG0995 Centromere-associated 95.4 5.7 0.00012 44.2 31.4 308 31-356 215-549 (581)
54 KOG0250 DNA repair protein RAD 95.3 2.2 4.8E-05 50.2 21.0 154 56-213 269-430 (1074)
55 PRK01156 chromosome segregatio 95.2 7 0.00015 44.2 31.0 18 425-442 833-850 (895)
56 PF10473 CENP-F_leu_zip: Leuci 95.2 0.52 1.1E-05 43.6 12.9 95 206-314 11-105 (140)
57 KOG0977 Nuclear envelope prote 95.2 5.1 0.00011 44.4 22.2 132 61-212 58-190 (546)
58 PF14662 CCDC155: Coiled-coil 95.1 3.3 7.2E-05 40.4 18.5 120 164-308 9-128 (193)
59 KOG0978 E3 ubiquitin ligase in 94.9 8.7 0.00019 43.7 27.9 198 66-287 376-592 (698)
60 COG5185 HEC1 Protein involved 94.8 8.2 0.00018 42.6 26.2 300 33-354 253-588 (622)
61 KOG0018 Structural maintenance 94.5 14 0.00029 44.1 24.5 219 128-376 676-911 (1141)
62 PRK11637 AmiB activator; Provi 94.4 7.4 0.00016 40.6 22.2 85 99-194 43-127 (428)
63 PF14915 CCDC144C: CCDC144C pr 94.3 7.7 0.00017 40.3 21.5 221 36-309 73-298 (305)
64 PF09726 Macoilin: Transmembra 94.3 6.5 0.00014 44.5 20.9 209 138-367 421-654 (697)
65 PF05701 WEMBL: Weak chloropla 94.0 11 0.00024 40.9 28.4 173 99-271 238-417 (522)
66 PF10473 CENP-F_leu_zip: Leuci 93.9 2.8 6.1E-05 38.8 14.4 102 120-236 10-111 (140)
67 KOG0963 Transcription factor/C 93.7 15 0.00032 41.4 28.6 241 43-361 76-329 (629)
68 PRK11637 AmiB activator; Provi 93.7 10 0.00022 39.6 23.5 6 456-461 408-413 (428)
69 PF12128 DUF3584: Protein of u 93.7 20 0.00043 42.7 28.7 23 95-117 599-621 (1201)
70 PF15070 GOLGA2L5: Putative go 93.5 16 0.00034 41.0 24.2 25 129-153 44-68 (617)
71 PF05701 WEMBL: Weak chloropla 93.2 15 0.00033 39.9 30.5 43 23-65 59-101 (522)
72 KOG0946 ER-Golgi vesicle-tethe 93.1 2.7 5.9E-05 48.5 15.3 158 195-359 727-914 (970)
73 PRK09039 hypothetical protein; 92.8 6.1 0.00013 40.8 16.3 59 133-191 44-102 (343)
74 PF14662 CCDC155: Coiled-coil 92.3 10 0.00023 37.1 16.2 137 129-276 37-187 (193)
75 KOG0250 DNA repair protein RAD 92.2 31 0.00068 41.2 29.6 33 386-418 513-546 (1074)
76 PRK11281 hypothetical protein; 91.9 10 0.00023 45.1 18.8 66 246-311 226-307 (1113)
77 PF05557 MAD: Mitotic checkpoi 91.9 0.046 1E-06 60.3 0.0 69 247-315 357-432 (722)
78 TIGR02977 phageshock_pspA phag 91.6 13 0.00029 35.7 17.9 146 127-280 24-185 (219)
79 KOG1899 LAR transmembrane tyro 91.4 8.3 0.00018 43.8 16.2 87 127-213 103-189 (861)
80 PRK04778 septation ring format 90.5 30 0.00066 37.8 30.4 45 167-213 253-297 (569)
81 COG1579 Zn-ribbon protein, pos 90.5 13 0.00028 37.3 15.3 129 81-213 51-186 (239)
82 PF05010 TACC: Transforming ac 90.1 20 0.00043 35.2 20.4 39 167-205 6-44 (207)
83 PF09789 DUF2353: Uncharacteri 90.1 23 0.0005 37.0 17.2 69 282-361 147-215 (319)
84 PF06008 Laminin_I: Laminin Do 89.7 22 0.00047 34.9 20.2 163 23-194 49-216 (264)
85 PF15294 Leu_zip: Leucine zipp 89.4 16 0.00035 37.5 15.3 161 188-353 49-240 (278)
86 PRK10698 phage shock protein P 89.3 23 0.00049 34.6 18.0 146 127-280 24-185 (222)
87 PF14073 Cep57_CLD: Centrosome 89.0 12 0.00027 36.1 13.4 46 263-319 112-157 (178)
88 COG1579 Zn-ribbon protein, pos 88.9 28 0.0006 35.1 17.5 145 221-365 19-172 (239)
89 KOG0995 Centromere-associated 88.8 45 0.00098 37.5 25.3 109 162-273 445-572 (581)
90 PF05010 TACC: Transforming ac 88.8 25 0.00054 34.5 21.0 174 137-330 11-188 (207)
91 KOG0018 Structural maintenance 88.5 64 0.0014 38.8 22.1 213 83-316 677-897 (1141)
92 PRK09039 hypothetical protein; 88.4 34 0.00073 35.5 17.6 60 293-352 141-200 (343)
93 PF13851 GAS: Growth-arrest sp 88.1 26 0.00056 33.8 16.6 84 100-183 27-120 (201)
94 PF13851 GAS: Growth-arrest sp 88.1 26 0.00056 33.8 15.9 136 171-317 28-171 (201)
95 PRK01156 chromosome segregatio 88.1 53 0.0012 37.3 37.4 20 255-274 417-436 (895)
96 PF07926 TPR_MLP1_2: TPR/MLP1/ 88.0 17 0.00037 32.4 12.9 83 172-268 33-119 (132)
97 KOG0946 ER-Golgi vesicle-tethe 87.9 63 0.0014 38.0 23.2 71 75-152 646-716 (970)
98 KOG0963 Transcription factor/C 87.6 56 0.0012 37.1 21.8 174 131-310 192-404 (629)
99 PF09728 Taxilin: Myosin-like 87.4 37 0.00081 34.8 26.9 164 185-366 122-303 (309)
100 KOG1029 Endocytic adaptor prot 86.8 73 0.0016 37.6 22.2 78 128-212 444-521 (1118)
101 PF05622 HOOK: HOOK protein; 86.3 0.34 7.5E-06 53.7 1.5 51 253-303 362-412 (713)
102 PF08317 Spc7: Spc7 kinetochor 85.8 44 0.00095 34.1 19.2 142 43-190 122-264 (325)
103 PF05622 HOOK: HOOK protein; 85.7 0.24 5.3E-06 54.8 0.0 148 162-316 362-529 (713)
104 PRK11281 hypothetical protein; 85.6 76 0.0017 38.2 19.8 49 194-249 281-329 (1113)
105 PF05911 DUF869: Plant protein 85.5 79 0.0017 36.7 21.0 26 252-277 664-689 (769)
106 PRK10929 putative mechanosensi 85.2 78 0.0017 38.2 19.7 62 247-308 208-284 (1109)
107 TIGR03007 pepcterm_ChnLen poly 82.7 45 0.00098 35.1 15.0 47 128-181 247-293 (498)
108 KOG0804 Cytoplasmic Zn-finger 82.2 17 0.00038 39.7 11.8 75 248-329 369-443 (493)
109 COG1842 PspA Phage shock prote 80.4 64 0.0014 32.0 17.6 143 127-277 24-182 (225)
110 PF06156 DUF972: Protein of un 79.9 7.4 0.00016 34.5 6.9 85 325-425 5-92 (107)
111 PF07926 TPR_MLP1_2: TPR/MLP1/ 79.0 47 0.001 29.7 16.5 75 291-365 54-128 (132)
112 PF05266 DUF724: Protein of un 78.8 32 0.0007 33.2 11.4 111 78-189 75-185 (190)
113 PF05483 SCP-1: Synaptonemal c 78.7 1.4E+02 0.003 34.8 32.7 158 162-329 505-666 (786)
114 PF08614 ATG16: Autophagy prot 78.1 19 0.00042 33.9 9.6 113 254-366 67-182 (194)
115 KOG0980 Actin-binding protein 78.0 1.6E+02 0.0034 35.1 20.7 83 258-340 463-549 (980)
116 TIGR01843 type_I_hlyD type I s 77.8 81 0.0018 31.7 19.8 42 337-378 241-282 (423)
117 PF05911 DUF869: Plant protein 77.3 1.5E+02 0.0033 34.5 19.5 74 127-200 588-661 (769)
118 PRK10884 SH3 domain-containing 76.8 17 0.00038 35.4 9.1 79 128-230 86-164 (206)
119 TIGR01005 eps_transp_fam exopo 76.8 1.3E+02 0.0029 33.6 18.0 43 34-76 181-223 (754)
120 PF10267 Tmemb_cc2: Predicted 76.4 18 0.00039 38.7 9.8 53 219-274 258-318 (395)
121 TIGR01005 eps_transp_fam exopo 76.4 1.2E+02 0.0026 34.0 16.4 26 135-160 237-262 (754)
122 KOG4643 Uncharacterized coiled 75.0 2E+02 0.0044 34.9 23.3 205 107-351 394-601 (1195)
123 PF10168 Nup88: Nuclear pore c 74.6 32 0.00069 39.3 11.7 73 282-354 625-711 (717)
124 PRK10929 putative mechanosensi 74.1 2.1E+02 0.0046 34.7 26.1 117 129-252 181-312 (1109)
125 PF08614 ATG16: Autophagy prot 73.7 16 0.00035 34.4 7.9 114 81-212 73-186 (194)
126 COG4477 EzrA Negative regulato 73.7 1.6E+02 0.0036 33.2 21.8 223 64-308 200-429 (570)
127 PF08647 BRE1: BRE1 E3 ubiquit 73.5 21 0.00045 30.6 7.8 59 23-81 7-65 (96)
128 KOG0964 Structural maintenance 73.1 2.2E+02 0.0048 34.5 31.9 338 72-434 227-594 (1200)
129 PF12325 TMF_TATA_bd: TATA ele 72.5 61 0.0013 29.4 10.8 97 251-354 20-119 (120)
130 PF10168 Nup88: Nuclear pore c 71.9 1.6E+02 0.0036 33.8 16.4 96 23-121 562-657 (717)
131 PF04156 IncA: IncA protein; 71.2 86 0.0019 28.9 11.9 73 129-208 110-182 (191)
132 PF11559 ADIP: Afadin- and alp 70.9 63 0.0014 29.1 10.6 66 289-354 80-145 (151)
133 TIGR03017 EpsF chain length de 70.6 1.4E+02 0.003 31.0 17.0 17 325-341 350-366 (444)
134 TIGR03007 pepcterm_ChnLen poly 70.6 1.5E+02 0.0032 31.3 18.0 30 397-434 439-468 (498)
135 PRK10884 SH3 domain-containing 70.5 32 0.00069 33.6 9.2 33 164-196 133-165 (206)
136 PF06818 Fez1: Fez1; InterPro 70.4 72 0.0016 31.6 11.6 40 322-361 129-168 (202)
137 KOG0612 Rho-associated, coiled 69.9 2.8E+02 0.0061 34.3 28.8 40 52-91 492-531 (1317)
138 PF04156 IncA: IncA protein; 68.6 98 0.0021 28.5 13.1 55 157-211 96-150 (191)
139 TIGR01000 bacteriocin_acc bact 68.5 1.6E+02 0.0036 31.1 19.7 83 297-379 237-328 (457)
140 PF15619 Lebercilin: Ciliary p 68.5 1.2E+02 0.0026 29.4 16.1 98 181-287 47-144 (194)
141 TIGR03185 DNA_S_dndD DNA sulfu 68.1 2E+02 0.0044 32.0 25.5 18 255-272 399-416 (650)
142 PF11559 ADIP: Afadin- and alp 68.0 77 0.0017 28.5 10.5 66 128-193 66-131 (151)
143 TIGR03017 EpsF chain length de 67.0 1.6E+02 0.0035 30.4 17.7 41 35-75 159-199 (444)
144 PF09730 BicD: Microtubule-ass 66.2 2.2E+02 0.0047 33.1 15.8 152 88-250 19-173 (717)
145 KOG4438 Centromere-associated 65.6 2.2E+02 0.0047 31.4 25.2 212 127-362 172-427 (446)
146 PF04849 HAP1_N: HAP1 N-termin 65.4 1.8E+02 0.004 30.5 15.7 119 188-348 164-282 (306)
147 TIGR00634 recN DNA repair prot 65.2 2.2E+02 0.0047 31.2 19.4 91 99-189 269-365 (563)
148 TIGR02680 conserved hypothetic 64.9 3.4E+02 0.0073 33.4 21.6 135 78-212 789-935 (1353)
149 PF04012 PspA_IM30: PspA/IM30 64.7 1.3E+02 0.0028 28.5 19.8 160 127-317 23-186 (221)
150 TIGR00634 recN DNA repair prot 63.9 2.3E+02 0.0049 31.0 20.3 26 173-198 215-240 (563)
151 KOG4677 Golgi integral membran 62.5 2.6E+02 0.0057 31.3 28.7 142 219-366 302-462 (554)
152 smart00787 Spc7 Spc7 kinetocho 62.4 1.3E+02 0.0028 31.1 12.2 113 24-143 163-286 (312)
153 KOG0239 Kinesin (KAR3 subfamil 62.3 2.9E+02 0.0063 31.7 15.9 31 392-424 367-397 (670)
154 TIGR01010 BexC_CtrB_KpsE polys 61.8 1.9E+02 0.0041 29.4 14.6 101 45-154 168-268 (362)
155 PF15070 GOLGA2L5: Putative go 61.0 2.9E+02 0.0064 31.4 32.1 268 64-367 11-311 (617)
156 PF15397 DUF4618: Domain of un 60.5 2.1E+02 0.0045 29.4 15.9 25 189-213 11-35 (258)
157 PF05278 PEARLI-4: Arabidopsis 59.9 1E+02 0.0022 31.7 10.8 100 81-181 151-260 (269)
158 KOG0994 Extracellular matrix g 59.5 4.4E+02 0.0096 33.0 28.1 74 139-212 1515-1588(1758)
159 PF10146 zf-C4H2: Zinc finger- 59.2 1.1E+02 0.0024 30.5 10.6 57 305-361 34-93 (230)
160 PF14197 Cep57_CLD_2: Centroso 59.1 69 0.0015 26.4 7.8 62 128-210 5-66 (69)
161 PF06008 Laminin_I: Laminin Do 58.4 1.9E+02 0.0041 28.4 19.2 35 294-329 183-217 (264)
162 KOG0249 LAR-interacting protei 58.0 3.8E+02 0.0082 31.7 16.2 67 174-240 67-133 (916)
163 PHA02414 hypothetical protein 56.5 30 0.00065 31.2 5.6 75 170-268 4-78 (111)
164 PF04012 PspA_IM30: PspA/IM30 56.5 1.8E+02 0.0039 27.5 13.8 53 134-186 90-142 (221)
165 PF09728 Taxilin: Myosin-like 55.9 2.5E+02 0.0054 29.0 25.4 196 70-316 109-305 (309)
166 KOG0982 Centrosomal protein Nu 55.9 3.3E+02 0.0071 30.3 15.2 97 127-239 249-345 (502)
167 TIGR01010 BexC_CtrB_KpsE polys 55.7 2.4E+02 0.0052 28.7 15.5 40 416-458 310-353 (362)
168 PF10186 Atg14: UV radiation r 54.9 2E+02 0.0044 27.6 21.8 27 436-462 198-224 (302)
169 PRK09841 cryptic autophosphory 54.7 3.7E+02 0.0079 30.5 15.7 106 33-153 253-364 (726)
170 KOG0804 Cytoplasmic Zn-finger 54.4 1.2E+02 0.0026 33.6 10.7 73 172-244 363-435 (493)
171 KOG0993 Rab5 GTPase effector R 52.5 1.4E+02 0.003 33.0 10.7 73 189-276 105-177 (542)
172 PF09789 DUF2353: Uncharacteri 52.0 3.1E+02 0.0068 28.9 19.4 79 13-98 31-123 (319)
173 KOG3850 Predicted membrane pro 51.9 1.5E+02 0.0032 32.5 10.7 52 220-274 307-366 (455)
174 COG0419 SbcC ATPase involved i 51.7 4.4E+02 0.0096 30.6 36.5 25 166-190 420-444 (908)
175 PF03962 Mnd1: Mnd1 family; I 51.1 1.4E+02 0.003 28.6 9.6 73 126-213 60-132 (188)
176 PF08317 Spc7: Spc7 kinetochor 50.9 2.9E+02 0.0063 28.3 22.4 59 296-354 230-288 (325)
177 PF12325 TMF_TATA_bd: TATA ele 49.4 2.1E+02 0.0045 26.1 12.2 97 159-266 19-115 (120)
178 PF07106 TBPIP: Tat binding pr 49.3 85 0.0018 28.8 7.7 54 104-157 34-101 (169)
179 PF06156 DUF972: Protein of un 48.9 39 0.00084 30.0 5.2 53 251-310 5-57 (107)
180 PF04582 Reo_sigmaC: Reovirus 47.9 25 0.00055 36.9 4.4 54 160-213 32-85 (326)
181 PF02994 Transposase_22: L1 tr 47.8 15 0.00032 38.4 2.8 56 261-316 137-192 (370)
182 PLN03229 acetyl-coenzyme A car 47.4 4.4E+02 0.0095 31.0 14.1 61 132-230 646-706 (762)
183 smart00787 Spc7 Spc7 kinetocho 46.9 3.5E+02 0.0077 28.1 19.1 134 46-191 120-260 (312)
184 PF07989 Microtub_assoc: Micro 45.1 87 0.0019 26.2 6.4 53 161-213 5-58 (75)
185 PF04849 HAP1_N: HAP1 N-termin 44.9 4E+02 0.0086 28.1 22.1 125 130-271 162-286 (306)
186 COG4467 Regulator of replicati 44.8 1.2E+02 0.0026 27.8 7.6 36 332-367 12-50 (114)
187 PF04508 Pox_A_type_inc: Viral 44.7 20 0.00043 24.5 2.0 20 296-315 1-20 (23)
188 PF05266 DUF724: Protein of un 44.5 3.1E+02 0.0066 26.6 10.9 50 130-179 98-147 (190)
189 PF09738 DUF2051: Double stran 43.1 3.3E+02 0.0072 28.3 11.5 97 255-376 78-178 (302)
190 PF07111 HCR: Alpha helical co 42.7 6.2E+02 0.014 29.7 29.4 193 127-320 161-390 (739)
191 PF00170 bZIP_1: bZIP transcri 42.4 27 0.00058 27.4 2.9 29 284-312 35-63 (64)
192 KOG0239 Kinesin (KAR3 subfamil 42.2 5.9E+02 0.013 29.3 18.4 130 220-364 176-308 (670)
193 KOG4673 Transcription factor T 41.3 6.8E+02 0.015 29.7 27.7 141 57-205 405-565 (961)
194 PF12329 TMF_DNA_bd: TATA elem 41.2 1.7E+02 0.0036 24.3 7.4 22 167-188 44-65 (74)
195 PF03962 Mnd1: Mnd1 family; I 40.4 1.6E+02 0.0035 28.2 8.2 59 293-356 73-131 (188)
196 COG4942 Membrane-bound metallo 40.4 5.4E+02 0.012 28.3 22.7 69 110-178 38-109 (420)
197 PF07989 Microtub_assoc: Micro 40.2 84 0.0018 26.3 5.6 20 287-306 12-31 (75)
198 PRK09343 prefoldin subunit bet 40.1 2.3E+02 0.005 25.3 8.7 108 130-241 2-114 (121)
199 PF07407 Seadorna_VP6: Seadorn 39.9 73 0.0016 34.1 6.3 86 282-367 32-119 (420)
200 PF07439 DUF1515: Protein of u 38.9 1.1E+02 0.0023 28.1 6.3 53 130-182 10-66 (112)
201 PF12329 TMF_DNA_bd: TATA elem 38.9 2.1E+02 0.0045 23.8 7.6 46 139-184 2-47 (74)
202 PRK11519 tyrosine kinase; Prov 38.8 6.1E+02 0.013 28.8 13.6 104 34-152 254-363 (719)
203 PF00435 Spectrin: Spectrin re 38.4 1.9E+02 0.004 22.4 11.0 82 130-213 3-88 (105)
204 PF02994 Transposase_22: L1 tr 38.0 42 0.00091 35.2 4.3 56 170-232 137-192 (370)
205 PF12001 DUF3496: Domain of un 37.9 2.1E+02 0.0045 26.0 8.0 77 257-354 3-80 (111)
206 PF04582 Reo_sigmaC: Reovirus 36.9 56 0.0012 34.4 4.9 105 58-180 32-136 (326)
207 PF13514 AAA_27: AAA domain 36.8 8E+02 0.017 29.3 31.3 16 170-185 784-799 (1111)
208 KOG1962 B-cell receptor-associ 36.3 2.6E+02 0.0057 28.0 9.2 67 287-357 149-215 (216)
209 PF05335 DUF745: Protein of un 36.3 4.2E+02 0.0091 25.9 12.4 110 112-239 62-171 (188)
210 TIGR01843 type_I_hlyD type I s 35.5 4.8E+02 0.01 26.3 15.6 15 296-310 253-267 (423)
211 KOG4809 Rab6 GTPase-interactin 35.5 7.5E+02 0.016 28.5 21.7 123 106-232 312-476 (654)
212 PF10212 TTKRSYEDQ: Predicted 34.6 3.2E+02 0.007 30.7 10.4 91 258-348 417-511 (518)
213 COG4026 Uncharacterized protei 33.4 5.6E+02 0.012 26.5 11.6 144 255-426 129-281 (290)
214 PF12777 MT: Microtubule-bindi 33.2 5.6E+02 0.012 26.4 16.1 235 119-365 7-314 (344)
215 PF13870 DUF4201: Domain of un 32.3 4.1E+02 0.0089 24.6 15.0 24 100-123 17-40 (177)
216 KOG0999 Microtubule-associated 32.2 8.6E+02 0.019 28.3 17.3 106 132-238 104-220 (772)
217 COG3524 KpsE Capsule polysacch 31.4 2.8E+02 0.0061 29.7 8.8 92 46-146 178-269 (372)
218 TIGR01000 bacteriocin_acc bact 30.9 6.7E+02 0.015 26.6 17.9 22 255-276 237-258 (457)
219 PLN02939 transferase, transfer 30.9 1E+03 0.023 28.9 19.1 90 218-321 299-401 (977)
220 KOG0978 E3 ubiquitin ligase in 30.8 9.3E+02 0.02 28.2 33.9 122 248-373 497-625 (698)
221 PHA00327 minor capsid protein 30.6 79 0.0017 30.9 4.4 31 337-367 110-142 (187)
222 PRK15422 septal ring assembly 30.4 2E+02 0.0044 24.9 6.4 52 162-213 17-68 (79)
223 KOG1850 Myosin-like coiled-coi 30.1 7.4E+02 0.016 26.8 23.3 84 292-375 218-332 (391)
224 PF14932 HAUS-augmin3: HAUS au 29.9 4.5E+02 0.0096 26.2 9.7 36 46-83 27-62 (256)
225 PRK13729 conjugal transfer pil 29.9 1.1E+02 0.0024 33.8 6.0 46 134-179 75-120 (475)
226 PRK13169 DNA replication intia 29.5 1.2E+02 0.0025 27.4 5.0 52 251-309 5-56 (110)
227 PF09304 Cortex-I_coil: Cortex 29.4 4.4E+02 0.0095 24.0 9.2 66 252-324 14-81 (107)
228 PRK15422 septal ring assembly 29.4 2.6E+02 0.0057 24.2 6.9 58 256-313 20-77 (79)
229 PF13747 DUF4164: Domain of un 28.9 3.7E+02 0.0081 23.0 8.6 45 166-210 35-79 (89)
230 PF00846 Hanta_nucleocap: Hant 28.4 1.1E+02 0.0024 33.2 5.6 68 74-149 1-70 (428)
231 PF15619 Lebercilin: Ciliary p 27.2 5.9E+02 0.013 24.8 20.1 138 12-157 5-147 (194)
232 COG1842 PspA Phage shock prote 27.1 6.4E+02 0.014 25.1 15.3 164 135-317 24-187 (225)
233 PRK04406 hypothetical protein; 26.9 1.7E+02 0.0037 24.5 5.3 23 254-276 4-26 (75)
234 PF04102 SlyX: SlyX; InterPro 26.7 2.6E+02 0.0055 22.7 6.2 44 324-367 7-50 (69)
235 KOG1850 Myosin-like coiled-coi 26.7 8.5E+02 0.018 26.4 20.0 70 237-320 99-168 (391)
236 PF04102 SlyX: SlyX; InterPro 26.5 1.3E+02 0.0029 24.3 4.6 19 258-276 1-19 (69)
237 KOG4360 Uncharacterized coiled 26.4 7.5E+02 0.016 28.3 11.4 81 192-272 167-251 (596)
238 PF14817 HAUS5: HAUS augmin-li 26.3 8.8E+02 0.019 27.9 12.2 181 235-434 306-505 (632)
239 PF09738 DUF2051: Double stran 26.3 7.6E+02 0.017 25.8 11.4 162 168-354 75-238 (302)
240 PF05546 She9_MDM33: She9 / Md 26.3 6.8E+02 0.015 25.1 11.0 78 114-193 20-129 (207)
241 PF06810 Phage_GP20: Phage min 26.2 5.2E+02 0.011 24.2 8.9 77 133-213 18-97 (155)
242 COG1382 GimC Prefoldin, chaper 26.1 3.5E+02 0.0075 24.9 7.5 71 79-153 10-95 (119)
243 TIGR03185 DNA_S_dndD DNA sulfu 26.0 9.6E+02 0.021 26.8 29.0 46 100-146 266-311 (650)
244 PRK00846 hypothetical protein; 25.9 1.1E+02 0.0024 26.1 4.0 53 259-311 11-63 (77)
245 KOG4603 TBP-1 interacting prot 25.8 3.9E+02 0.0085 26.5 8.2 81 66-148 5-99 (201)
246 PF12795 MscS_porin: Mechanose 25.8 6.2E+02 0.013 24.6 14.8 49 128-176 157-212 (240)
247 PRK10869 recombination and rep 25.8 9.4E+02 0.02 26.7 18.7 30 23-52 168-197 (553)
248 PF07106 TBPIP: Tat binding pr 25.7 2.6E+02 0.0056 25.7 6.8 31 127-157 78-108 (169)
249 smart00340 HALZ homeobox assoc 25.4 54 0.0012 25.6 1.9 22 192-213 13-34 (44)
250 PF05529 Bap31: B-cell recepto 25.3 3.9E+02 0.0085 25.0 8.1 63 135-197 125-188 (192)
251 COG2433 Uncharacterized conser 25.0 5.5E+02 0.012 29.7 10.2 69 128-196 436-507 (652)
252 KOG0982 Centrosomal protein Nu 24.8 1E+03 0.022 26.7 17.8 127 167-310 219-353 (502)
253 PF08537 NBP1: Fungal Nap bind 24.7 3.1E+02 0.0067 29.1 7.8 52 127-178 174-225 (323)
254 PF07798 DUF1640: Protein of u 24.7 5.8E+02 0.013 23.9 13.7 100 255-354 45-150 (177)
255 PF04111 APG6: Autophagy prote 24.6 5.5E+02 0.012 26.5 9.6 40 162-201 98-137 (314)
256 PRK02793 phi X174 lysis protei 24.6 2.6E+02 0.0057 23.1 6.0 54 38-91 6-59 (72)
257 PF06818 Fez1: Fez1; InterPro 24.6 4.5E+02 0.0098 26.2 8.5 28 127-154 30-57 (202)
258 PF09755 DUF2046: Uncharacteri 24.1 8.8E+02 0.019 25.7 21.4 56 131-193 23-78 (310)
259 PF15188 CCDC-167: Coiled-coil 23.9 2.2E+02 0.0047 24.8 5.5 60 17-76 2-65 (85)
260 PF10234 Cluap1: Clusterin-ass 23.8 7.3E+02 0.016 25.6 10.1 82 62-147 156-237 (267)
261 PRK09841 cryptic autophosphory 23.5 4.9E+02 0.011 29.5 9.7 25 128-152 304-328 (726)
262 COG3206 GumC Uncharacterized p 23.3 9.1E+02 0.02 25.6 16.8 56 32-87 180-236 (458)
263 PF09744 Jnk-SapK_ap_N: JNK_SA 23.1 5.9E+02 0.013 24.2 8.7 49 164-212 90-138 (158)
264 PF13870 DUF4201: Domain of un 22.9 6.1E+02 0.013 23.5 14.2 47 164-210 92-138 (177)
265 PRK13169 DNA replication intia 22.8 3.3E+02 0.0071 24.6 6.6 50 132-181 5-54 (110)
266 PRK02119 hypothetical protein; 22.8 3.1E+02 0.0067 22.8 6.1 54 38-91 7-60 (73)
267 PRK00409 recombination and DNA 22.5 2.8E+02 0.0061 32.1 7.7 50 164-213 514-563 (782)
268 KOG0249 LAR-interacting protei 22.4 1.4E+03 0.03 27.4 17.0 83 126-213 103-185 (916)
269 PRK10698 phage shock protein P 22.4 7.5E+02 0.016 24.3 18.5 88 139-236 96-183 (222)
270 PF09177 Syntaxin-6_N: Syntaxi 22.3 4.8E+02 0.01 22.0 7.6 55 287-341 37-94 (97)
271 cd07429 Cby_like Chibby, a nuc 21.9 1E+02 0.0022 27.8 3.3 26 341-366 71-96 (108)
272 smart00340 HALZ homeobox assoc 21.8 51 0.0011 25.7 1.2 21 283-303 13-33 (44)
273 PRK10476 multidrug resistance 21.7 8.4E+02 0.018 24.6 13.4 15 364-378 205-219 (346)
274 PRK00846 hypothetical protein; 21.6 3.3E+02 0.0071 23.3 6.1 60 36-95 9-68 (77)
275 COG3883 Uncharacterized protei 21.6 9.1E+02 0.02 25.0 19.6 50 315-365 177-226 (265)
276 KOG4809 Rab6 GTPase-interactin 21.3 1.3E+03 0.028 26.7 13.1 99 161-274 329-441 (654)
277 PRK02119 hypothetical protein; 21.3 4.8E+02 0.01 21.7 7.4 53 297-367 3-55 (73)
278 TIGR00833 actII Transport prot 21.0 1.4E+03 0.03 26.9 18.6 12 419-430 721-732 (910)
279 PF06005 DUF904: Protein of un 21.0 3.7E+02 0.0081 22.4 6.2 51 255-312 19-69 (72)
280 PF13863 DUF4200: Domain of un 20.9 5.4E+02 0.012 22.1 9.8 65 249-313 41-105 (126)
281 PF05529 Bap31: B-cell recepto 20.8 3.2E+02 0.0069 25.6 6.5 38 252-289 152-189 (192)
282 PRK04406 hypothetical protein; 20.8 3.9E+02 0.0085 22.4 6.3 52 38-89 9-60 (75)
283 KOG0964 Structural maintenance 20.6 1.7E+03 0.036 27.7 23.9 136 127-276 348-496 (1200)
284 COG1566 EmrA Multidrug resista 20.5 1E+03 0.023 25.2 12.0 132 230-379 88-220 (352)
285 TIGR02231 conserved hypothetic 20.5 4E+02 0.0088 28.8 8.0 104 217-356 69-173 (525)
286 KOG0128 RNA-binding protein SA 20.3 34 0.00074 40.0 0.0 51 409-461 693-748 (881)
287 PF05384 DegS: Sensor protein 20.2 7.6E+02 0.017 23.5 10.9 51 220-270 106-156 (159)
288 TIGR01069 mutS2 MutS2 family p 20.1 3.4E+02 0.0073 31.4 7.7 79 167-268 512-590 (771)
No 1
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.99 E-value=1.9e-07 Score=89.45 Aligned_cols=231 Identities=26% Similarity=0.314 Sum_probs=173.4
Q ss_pred hhhhhHHHHHhHHHHHHHHHHHHHhhcchHHHHhhhhHHHhhhhhHHhhhccccccchhHHHHHHHhHHHHHhhhhHHHH
Q 012393 41 KLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQ 120 (464)
Q Consensus 41 kL~~~eqE~~~lEEaa~~~~eR~~EAENasEvL~G~Skel~gkLq~~Qf~L~as~~REseLksKLk~s~EQLe~k~~~Le 120 (464)
|+..+.++....++-...+-..+=+++...+-.-+....|..|++.++-+|.....|=.....||......+......+.
T Consensus 2 K~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k 81 (237)
T PF00261_consen 2 KIQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARK 81 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666666666677777777778899999999999998888888999999999988888888877
Q ss_pred HhhhcCchhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhh
Q 012393 121 KLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTN 200 (464)
Q Consensus 121 kl~~s~~SE~~sL~eKV~sLEeQLkese~Ql~~akas~Ea~~~~isdmEnvIedLK~kVskAESRAe~AEskc~lLteTN 200 (464)
.|+.. ..+--+|+..||.+|++.......+....+....++.-++ ..+.+||.|++.++++|..|-+.
T Consensus 82 ~lE~r----~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E-------~~Le~aEeR~e~~E~ki~eLE~e- 149 (237)
T PF00261_consen 82 VLENR----EQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLE-------QELERAEERAEAAESKIKELEEE- 149 (237)
T ss_dssp HHHHH----HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhhchhHHHHHHH-
Confidence 77764 3466788888888888888888777777665555555444 44557777777777777655432
Q ss_pred HHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHhhhhhhhhhhhhh
Q 012393 201 LELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESV 280 (464)
Q Consensus 201 ~ELneEL~~Lks~~s~~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~mL~stikDME~vIeDLksKv~kaE~rae~~ 280 (464)
|..+ .+.|+.+ +++.+ -......+++.-|.+|..++..+|.||+.+
T Consensus 150 ------l~~~--------------~~~lk~l-----------E~~~~---~~~~re~~~e~~i~~L~~~lkeaE~Rae~a 195 (237)
T PF00261_consen 150 ------LKSV--------------GNNLKSL-----------EASEE---KASEREDEYEEKIRDLEEKLKEAENRAEFA 195 (237)
T ss_dssp ------HHHH--------------HHHHHHH-----------HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------HHHH--------------HHHHHHh-----------hhhhh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 2223322 12222 124457888999999999999999999999
Q ss_pred hhhhhhhhccchhhhhhhhhhhhHHHHHHHhhHHHHH
Q 012393 281 EEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANI 317 (464)
Q Consensus 281 E~kc~~LsEtN~eLneELsflrskl~~LE~sL~~A~~ 317 (464)
|..|..|-..+-.|..+|...+.+..++..-|+.+..
T Consensus 196 E~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~l~ 232 (237)
T PF00261_consen 196 ERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQTLN 232 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999987764
No 2
>PRK02224 chromosome segregation protein; Provisional
Probab=98.67 E-value=0.00022 Score=78.44 Aligned_cols=283 Identities=17% Similarity=0.229 Sum_probs=162.8
Q ss_pred HHHHHHhhhh--hhHHHhHHHHhhhHHHHHhhhhhhHHHHHhHHHHHHHHHHHHH---hhcchHHHHhhhhHHHhhhhhH
Q 012393 12 RMLEKSLARE--LDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFL---EAENSAEVLMGISKEMLGRFQI 86 (464)
Q Consensus 12 rmLEkSlA~e--~dLEkkL~es~~~eeeLk~kL~~~eqE~~~lEEaa~~~~eR~~---EAENasEvL~G~Skel~gkLq~ 86 (464)
..++..|... -+++..|...+....++...+....+....++.....+..++- ...+..+.+.+..+.+..+++.
T Consensus 190 ~~~~~~l~~~~~~~l~~~l~~~~~~l~el~~~i~~~~~~~~~l~~~l~~l~~~~~el~~~~~~l~~l~~~~~~l~~~i~~ 269 (880)
T PRK02224 190 DQLKAQIEEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAE 269 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444443 4455666666666666666666666666555555544443332 2223344445555555555555
Q ss_pred HhhhccccccchhHHHHHHHhHHHHHhhhhHHHHHhhhc---Cchhh-------hhHHHHHHHHHHHHHHHHHHHhhhhh
Q 012393 87 VQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLEST---KNSEV-------LTMKEKVKSLEEQLKESEIRLQNANA 156 (464)
Q Consensus 87 ~Qf~L~as~~REseLksKLk~s~EQLe~k~~~Lekl~~s---~~SE~-------~sL~eKV~sLEeQLkese~Ql~~aka 156 (464)
.+..+ ..+..++.....++......++.+... ..... ..+..|...|+..+.+...++.....
T Consensus 270 ~e~~~-------~~l~~~i~~~~~~~~~le~e~~~l~~~l~~~~~~~~~l~~~~~~l~~k~~el~~~l~~~~~~l~~~~~ 342 (880)
T PRK02224 270 TERER-------EELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNE 342 (880)
T ss_pred HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55544 444444444444444333333332222 12222 34555566666666665555566555
Q ss_pred chhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHH
Q 012393 157 CFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQ 236 (464)
Q Consensus 157 s~Ea~~~~isdmEnvIedLK~kVskAESRAe~AEskc~lLteTN~ELneEL~~Lks~~s~~~ek~~~LE~qLkese~QLq 236 (464)
..+.....+..++.-+.++...+..+.+....++.+...+...-..|..++..++.. +...+..+..++..++
T Consensus 343 ~~e~~~~~~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~-------l~~~~~~~~~~e~~l~ 415 (880)
T PRK02224 343 EAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRER-------FGDAPVDLGNAEDFLE 415 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhcchhhhhhhHHHHH
Confidence 566777888899999999999999899999999999988888888888888888775 3333345555555555
Q ss_pred HhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHhhhhhhhhhhhhhhhhhhh----hhccch-----hhhhhhhhhhhHHHH
Q 012393 237 QAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIV----LSEDNF-----ELKNKQSFMRDKIKI 307 (464)
Q Consensus 237 hA~As~eAs~eqQ~mL~stikDME~vIeDLksKv~kaE~rae~~E~kc~~----LsEtN~-----eLneELsflrskl~~ 307 (464)
.+....+.-...-+++.+.+...+..|+.++..+.. ..|-+ +..... ++...+.-++..++.
T Consensus 416 ~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~---------~~Cp~C~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (880)
T PRK02224 416 ELREERDELREREAELEATLRTARERVEEAEALLEA---------GKCPECGQPVEGSPHVETIEEDRERVEELEAELED 486 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------ccCCCCCCcCCCcchhhhHHHHHHHHHHHHHHHHH
Confidence 555555555555666666777777777777643321 12422 222222 444555555555556
Q ss_pred HHHhhHHHHH
Q 012393 308 LESSLNRANI 317 (464)
Q Consensus 308 LE~sL~~A~~ 317 (464)
++..+..++.
T Consensus 487 le~~l~~~~~ 496 (880)
T PRK02224 487 LEEEVEEVEE 496 (880)
T ss_pred HHHHHHHHHH
Confidence 6655555544
No 3
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.66 E-value=0.00019 Score=79.45 Aligned_cols=55 Identities=18% Similarity=0.262 Sum_probs=29.6
Q ss_pred chHHhhHHHHHH---HHHhhhhhhHHHhHHHHhhhHHHHHhhhhhhHHHHHhHHHHHH
Q 012393 3 NADQQRHILRML---EKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAE 57 (464)
Q Consensus 3 ~~eqqR~iLrmL---EkSlA~e~dLEkkL~es~~~eeeLk~kL~~~eqE~~~lEEaa~ 57 (464)
.+..+|.+|..+ .....+-.+...+|.....+..+++..+.........++...+
T Consensus 151 ~~~~r~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~l~el~~~~~~L~~q~~~l~~~~e 208 (1164)
T TIGR02169 151 SPVERRKIIDEIAGVAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRRERE 208 (1164)
T ss_pred CHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777654 3333333444555555555666666666555555555544433
No 4
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.47 E-value=0.00029 Score=77.56 Aligned_cols=201 Identities=18% Similarity=0.216 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHHHhhhhcCCC
Q 012393 136 KVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNND 215 (464)
Q Consensus 136 KV~sLEeQLkese~Ql~~akas~Ea~~~~isdmEnvIedLK~kVskAESRAe~AEskc~lLteTN~ELneEL~~Lks~~s 215 (464)
.+..+..++.+...++..........+..+..++.-+.++...+...+.+....+.....+.....++..++..|...-.
T Consensus 797 ~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 876 (1179)
T TIGR02168 797 ELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELE 876 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 33333333333333333333333333334444444444444444444444433333333333333333333333333210
Q ss_pred CcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHhhhhhhhhhhhhhhhhhh----hhhccc
Q 012393 216 SNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCI----VLSEDN 291 (464)
Q Consensus 216 ~~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~mL~stikDME~vIeDLksKv~kaE~rae~~E~kc~----~LsEtN 291 (464)
...+....++..+.....++..+.........+..-+...+..++.-+.++..++..++.+.......+. ...+.-
T Consensus 877 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~l~e~~~~~~~~~~~~~~~~ 956 (1179)
T TIGR02168 877 ALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEA 956 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHH
Confidence 0111233333444444444333333333333333334444555555555555555444443332111110 000100
Q ss_pred hh----hhhhhhhhhhHHHHHHHhhHHHHHHHHhhHHHHHHHhHHHHHH
Q 012393 292 FE----LKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEM 336 (464)
Q Consensus 292 ~e----LneELsflrskl~~LE~sL~~A~~~K~~TakdI~~~tK~i~dL 336 (464)
.. +..++.-++.++..|...+..-...++.+.+....-..=..||
T Consensus 957 ~~~~~~~~~~~~~l~~~i~~lg~aiee~~~~~~~a~er~~~l~~q~~dL 1005 (1179)
T TIGR02168 957 EALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFL 1005 (1179)
T ss_pred HhhccccccCHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 11 3455667777777777655554444433334333333333333
No 5
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.45 E-value=0.0056 Score=68.13 Aligned_cols=24 Identities=8% Similarity=-0.025 Sum_probs=12.5
Q ss_pred cceee-ecCCCCchHHHHHHHHHHH
Q 012393 420 NICRI-YTRGLAYPEFVKKVIAMMM 443 (464)
Q Consensus 420 ~~~~~-~~~~~~~~~~~~~~~~~~~ 443 (464)
.+|-+ +|..---|..+..++.|+.
T Consensus 1098 ~~~~lDE~~~~ld~~~~~~~~~~l~ 1122 (1164)
T TIGR02169 1098 PFYAFDEVDMFLDGVNVERVAKLIR 1122 (1164)
T ss_pred CcEEecccccccCHHHHHHHHHHHH
Confidence 44443 2555555666666655443
No 6
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.43 E-value=0.0005 Score=79.16 Aligned_cols=191 Identities=20% Similarity=0.301 Sum_probs=98.8
Q ss_pred hHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHh
Q 012393 161 SQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKV 240 (464)
Q Consensus 161 ~~~~isdmEnvIedLK~kVskAESRAe~AEskc~lLteTN~ELneEL~~Lks~~s~~~ek~~~LE~qLkese~QLqhA~A 240 (464)
...++.+.+.-+..+...+..-+.+.+....+...+.+...++.++++.|+.. +..++..+.+...+++++.+
T Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~l~~~~~ 870 (1163)
T COG1196 798 LEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEE-------LEELEKELEELKEELEELEA 870 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555555555555555556666666666666666666654 44444444444444444332
Q ss_pred h-------hhhhHHHHHhHHHHHhhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccc----hhhhhhhh-----hhhhH
Q 012393 241 S-------SEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDN----FELKNKQS-----FMRDK 304 (464)
Q Consensus 241 s-------~eAs~eqQ~mL~stikDME~vIeDLksKv~kaE~rae~~E~kc~~LsEtN----~eLneELs-----flrsk 304 (464)
. ......+...+-..+..+++-+.+++.+..+++.++..++.+|-.+.... ..+..+.. .++.+
T Consensus 871 ~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 950 (1163)
T COG1196 871 EKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELERE 950 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHH
Confidence 2 22222333344444555555555555555555555555555554333222 22222222 45666
Q ss_pred HHHHHHhhHHHHHHHHhhHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 012393 305 IKILESSLNRANIEKAASAKEVN---HRTKLMMEMVMQLATQRELIQKQVYSLTSEN 358 (464)
Q Consensus 305 l~~LE~sL~~A~~~K~~TakdI~---~~tK~i~dLV~qLa~ERErL~~Qissl~~eN 358 (464)
+..++..+..-....+....+.. -|-..+..-...|...+.+|+..|..+-++-
T Consensus 951 i~~le~~i~~lg~VN~~Aiee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~~~ 1007 (1163)
T COG1196 951 IERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEK 1007 (1163)
T ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66776664443333333444433 3444455555667778888888888875543
No 7
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.27 E-value=0.00011 Score=70.47 Aligned_cols=138 Identities=28% Similarity=0.319 Sum_probs=98.3
Q ss_pred HHhhhhHHHhhhhhHHhhhccccccchhHHHHHHHhHHHHHhhhhHHHHHhhhcCchhhhhHHHHHHHHHHHHHHHHHHH
Q 012393 72 VLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRL 151 (464)
Q Consensus 72 vL~G~Skel~gkLq~~Qf~L~as~~REseLksKLk~s~EQLe~k~~~Lekl~~s~~SE~~sL~eKV~sLEeQLkese~Ql 151 (464)
+|-+-....=+|+..++..|..+..+-.+.-.|+..+.-+|..-...|+..+.- +-.+..|+..||..|+.....+
T Consensus 82 ~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR----~e~~E~ki~eLE~el~~~~~~l 157 (237)
T PF00261_consen 82 VLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEER----AEAAESKIKELEEELKSVGNNL 157 (237)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhhchhHHHHHHHHHHHHHHH
Confidence 444444444455555555555555555555555555555555544444444432 3355667777777777777777
Q ss_pred hhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHHHhhhhcC
Q 012393 152 QNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGN 213 (464)
Q Consensus 152 ~~akas~Ea~~~~isdmEnvIedLK~kVskAESRAe~AEskc~lLteTN~ELneEL~~Lks~ 213 (464)
.+..++.+........++.-|..|..++..||.||+.|+.+|..|-..+-.|..+|..-+..
T Consensus 158 k~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~ 219 (237)
T PF00261_consen 158 KSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEK 219 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777766677778899999999999999999999999999999999999999999887774
No 8
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.26 E-value=0.0016 Score=71.89 Aligned_cols=65 Identities=17% Similarity=0.164 Sum_probs=25.9
Q ss_pred HHhHHHHHHHHHHHHHhhcchHHHHhhhhHHHhhhhhHHhhhccccccchhHHHHHHHhHHHHHh
Q 012393 49 AFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLK 113 (464)
Q Consensus 49 ~~~lEEaa~~~~eR~~EAENasEvL~G~Skel~gkLq~~Qf~L~as~~REseLksKLk~s~EQLe 113 (464)
...++.....+-.++-++.....-+......+...++..+..+.....+-..+...+.....++.
T Consensus 679 ~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 743 (1179)
T TIGR02168 679 IEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVE 743 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444444444444444444444444444444433333334444333333333
No 9
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.25 E-value=0.0036 Score=75.85 Aligned_cols=277 Identities=25% Similarity=0.323 Sum_probs=189.3
Q ss_pred HHHhhhhhHHhhhccccccchhHHHHHHHhHHHHHhhhhHHH-------HHhh---------------------------
Q 012393 78 KEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVL-------QKLE--------------------------- 123 (464)
Q Consensus 78 kel~gkLq~~Qf~L~as~~REseLksKLk~s~EQLe~k~~~L-------ekl~--------------------------- 123 (464)
.+.-.+++..|-.++++..+=.||...|+..+..|.+-+..- ..+.
T Consensus 1508 ~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~le~eE~~~lr~~~~~~~~r~e~er~l~ek~Ee~E~~rk~~~~~i~~ 1587 (1930)
T KOG0161|consen 1508 DEGGKRVHELEKEKRRLEQEKEELQAALEELEAALEAEEDKKLRLQLELQQLRSEIERRLQEKDEEIEELRKNLQRQLES 1587 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 344456667777777777777777777777777666433111 1111
Q ss_pred --hcCchhhhhHHHHHH---HHHHHHHHHHHHHhhhhhchhhhHH--------------HHhhhHHHHHHHHHHHHhhhh
Q 012393 124 --STKNSEVLTMKEKVK---SLEEQLKESEIRLQNANACFQTSQE--------------QLNEMDNFIESLKESLYGAES 184 (464)
Q Consensus 124 --~s~~SE~~sL~eKV~---sLEeQLkese~Ql~~akas~Ea~~~--------------~isdmEnvIedLK~kVskAES 184 (464)
..-++|...=.+-+. -+|.++.+.+.++.+|.......+. ++.+--.-.+++++.+..||-
T Consensus 1588 ~q~~Le~E~r~k~e~~r~KKkle~di~elE~~ld~ank~~~d~~K~lkk~q~~~k~lq~~~e~~~~~~~e~~~q~~~aer 1667 (1930)
T KOG0161|consen 1588 LQAELEAETRSKSEALRSKKKLEGDINELEIQLDHANKANEDAQKQLKKLQAQLKELQRELEDAQRAREELLEQLAEAER 1667 (1930)
T ss_pred HHHhhhHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 101233333333333 3788888999888877655433222 333555567789999999999
Q ss_pred hhhhHHHHHHhhhhhhH--------------HHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhH-----------
Q 012393 185 RAESAEEKVTQLTDTNL--------------ELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAK----------- 239 (464)
Q Consensus 185 RAe~AEskc~lLteTN~--------------ELneEL~~Lks~~s~~~ek~~~LE~qLkese~QLqhA~----------- 239 (464)
|...+.++|..|..... |+.+.++.+.+++++-+..=.-||..|.-++..|+...
T Consensus 1668 r~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~~~~~s~l~~~KrklE~~i~~l~~elee~~~~~~~~~Er~k 1747 (1930)
T KOG0161|consen 1668 RLAALQAELEELREKLEALERARRQAELELEELAERVNELNAQNSSLTAEKRKLEAEIAQLQSELEEEQSELRAAEERAK 1747 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 99999999999987654 45567888888755454444556666665555555443
Q ss_pred -hhhhhhH-------HHHH--hHHHHHhhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhhhhhhhhhhHHHHHH
Q 012393 240 -VSSEASQ-------EQQS--MLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILE 309 (464)
Q Consensus 240 -As~eAs~-------eqQ~--mL~stikDME~vIeDLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrskl~~LE 309 (464)
|.++|.+ ||.. -+++.-+-||.-+.||+.++-.+|..| +.-. ..-++-|+.|+.+||
T Consensus 1748 ka~~~a~~~~~el~~Eq~~~~~le~~k~~LE~~~kdLq~rL~e~E~~a---------~~~~----k~~i~~Learir~LE 1814 (1930)
T KOG0161|consen 1748 KAQADAAKLAEELRKEQETSQKLERLKKSLERQVKDLQLRLDEAEQAA---------LKGG----KKQIAKLEARIRELE 1814 (1930)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------hhcc----HHHHHHHHHHHHHHH
Confidence 3333322 2111 134455677888999999999888552 2111 134677899999999
Q ss_pred HhhHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHH---HHHHHHHHHhhhhhhHHHHHHhh
Q 012393 310 SSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQR---ELIQKQVYSLTSENKLLVEKLQY 367 (464)
Q Consensus 310 ~sL~~A~~~K~~TakdI~~~tK~i~dLV~qLa~ER---ErL~~Qissl~~eNkiL~~k~k~ 367 (464)
+.|+.....+..+.|-..-.-+.|.+|-.|...++ +|++.++.-+..+++.+-..+-.
T Consensus 1815 ~~l~~E~~~~~e~~k~~rk~er~vkEl~~q~eed~k~~~~~q~~~dkl~~k~~~~krQlee 1875 (1930)
T KOG0161|consen 1815 SELEGEQRRKAEAIKGLRKKERRVKELQFQVEEDKKNIERLQDLVDKLQAKIKQYKRQLEE 1875 (1930)
T ss_pred HHHhHhhhhhHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 99999999999999999999999999999999987 78999999999999888666543
No 10
>PRK02224 chromosome segregation protein; Provisional
Probab=98.12 E-value=0.028 Score=62.33 Aligned_cols=34 Identities=21% Similarity=0.220 Sum_probs=16.5
Q ss_pred hHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHhhc
Q 012393 34 NEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAE 67 (464)
Q Consensus 34 ~eeeLk~kL~~~eqE~~~lEEaa~~~~eR~~EAE 67 (464)
--.++..+++..+.+...+++....+-.++-+++
T Consensus 371 ~~~~~~~~l~~~~~~l~~l~~el~el~~~l~~~~ 404 (880)
T PRK02224 371 ELEEAREAVEDRREEIEELEEEIEELRERFGDAP 404 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 3344455555555555555555555444444333
No 11
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.10 E-value=0.032 Score=65.41 Aligned_cols=107 Identities=21% Similarity=0.195 Sum_probs=56.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhh---HHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHHHh
Q 012393 132 TMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEM---DNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEIN 208 (464)
Q Consensus 132 sL~eKV~sLEeQLkese~Ql~~akas~Ea~~~~isdm---EnvIedLK~kVskAESRAe~AEskc~lLteTN~ELneEL~ 208 (464)
.+...+..++.++......+.......+....+++.+ .+-+.+.+.++.++-.+-.+.+....-|.+-+.++..++.
T Consensus 826 ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~~~~ 905 (1311)
T TIGR00606 826 QVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIK 905 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444455555 4444555556666666666666666666666666666666
Q ss_pred hhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhh
Q 012393 209 FLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEAS 245 (464)
Q Consensus 209 ~Lks~~s~~~ek~~~LE~qLkese~QLqhA~As~eAs 245 (464)
.++.. +.-|...+.....++...+...++.
T Consensus 906 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 935 (1311)
T TIGR00606 906 DAKEQ-------DSPLETFLEKDQQEKEELISSKETS 935 (1311)
T ss_pred HHHHH-------hhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 66654 4444444444444444444333333
No 12
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.00 E-value=0.014 Score=67.47 Aligned_cols=49 Identities=18% Similarity=0.182 Sum_probs=35.3
Q ss_pred hhhhhhhhhhhhhhhhhccchhhhhhhhhhhhHHHHHHHhhHHHHHHHH
Q 012393 272 KAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKA 320 (464)
Q Consensus 272 kaE~rae~~E~kc~~LsEtN~eLneELsflrskl~~LE~sL~~A~~~K~ 320 (464)
..+.+...++.++-.|-..|+.-=+|..-...|+..|..........+.
T Consensus 946 ~~~~~i~~le~~i~~lg~VN~~Aiee~e~~~~r~~~l~~~~~dl~~a~~ 994 (1163)
T COG1196 946 ELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKE 994 (1163)
T ss_pred HHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666677778899999988777777777777777766665555544
No 13
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.94 E-value=0.045 Score=63.93 Aligned_cols=308 Identities=19% Similarity=0.190 Sum_probs=183.1
Q ss_pred hhhhhhHHHHHhHHHHHHHHHHHHHhhcchHHHHhhh-----hHHHhhhhhHHhhhccccccchhHHHHHHH-hHHHHHh
Q 012393 40 LKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGI-----SKEMLGRFQIVQFNLNGSLQRESELKSKLG-DFIEQLK 113 (464)
Q Consensus 40 ~kL~~~eqE~~~lEEaa~~~~eR~~EAENasEvL~G~-----Skel~gkLq~~Qf~L~as~~REseLksKLk-~s~EQLe 113 (464)
-++.+++.|+..||-.-. .-..|+..||-.=.+++. .-+.+.|+-..+..+.+..--.-+...|.. .+-+..+
T Consensus 288 ~~~k~~e~ek~~lE~~k~-~al~fL~kenel~~~~~~~~q~~~~~~~~ki~~~~~~~~~~~e~lk~~~ek~~~e~~~~~~ 366 (1293)
T KOG0996|consen 288 NRVKLVEKEKKALEGPKN-EALEFLKKENELFRKKNKLCQYILYESRAKIAEMQEELEKIEEGLKDENEKFDIESNEEVE 366 (1293)
T ss_pred HHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHH
Confidence 345567888888887654 456788888865544442 222344444444444433222222222222 1111111
Q ss_pred ---hhhHHHHHhhhcCchhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHH
Q 012393 114 ---AKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAE 190 (464)
Q Consensus 114 ---~k~~~Lekl~~s~~SE~~sL~eKV~sLEeQLkese~Ql~~akas~Ea~~~~isdmEnvIedLK~kVskAESRAe~AE 190 (464)
..+..+......-+..+-++..|.+.+|.+=..-+.++.+ +..++.-++--|+..+.+++.+|+--+.+.
T Consensus 367 k~e~~~~~~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~-------~~~k~kKleke~ek~~~~~~e~e~~pe~~~ 439 (1293)
T KOG0996|consen 367 KNEAVKKEIKERAKELKNKFESLKKKFQDLEREDVKREEKLKR-------LTSKIKKLEKEIEKARRKKSELEKAPEKAR 439 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhHHHHHhCchhhH
Confidence 1111111111111224445555555555554444444433 333444555555555555555555444444
Q ss_pred HHHHh-----------hhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhH
Q 012393 191 EKVTQ-----------LTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDM 259 (464)
Q Consensus 191 skc~l-----------LteTN~ELneEL~~Lks~~s~~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~mL~stikDM 259 (464)
-.... +...|-+|.+.+..|+.....-.++...+|+.|.-...|+..|++-..-.+.+-.+|.++..+.
T Consensus 440 ~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~ 519 (1293)
T KOG0996|consen 440 IEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETG 519 (1293)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33332 2334555666677777765545788889999999999999999888777776666666666666
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHhhHHHHHHHhHHHHHHHHH
Q 012393 260 ETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQ 339 (464)
Q Consensus 260 E~vIeDLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrskl~~LE~sL~~A~~~K~~TakdI~~~tK~i~dLV~q 339 (464)
-.=+++||+++....+ ++-+. +..+.++...|..-+.+...-.|++...++....+.+|
T Consensus 520 ~~~~e~lk~~L~~~~~--------------~~~e~-------~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~ 578 (1293)
T KOG0996|consen 520 LKKVEELKGKLLASSE--------------SLKEK-------KTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQ 578 (1293)
T ss_pred HHHHHHHHHHHHHHHH--------------HHHHH-------HHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 6666777777765543 33444 44455666777777777777788888889999999999
Q ss_pred HHHHHHHH---HHHHHHhhhhhhHH--HHHHhhcCCCCCcee
Q 012393 340 LATQRELI---QKQVYSLTSENKLL--VEKLQYSGKSSSATM 376 (464)
Q Consensus 340 La~ERErL---~~Qissl~~eNkiL--~~k~k~~~~~~~~~~ 376 (464)
+..=|+|+ .++.++-...|++| ...+|.+|+-++|-|
T Consensus 579 ~~~~rqrveE~ks~~~~~~s~~kVl~al~r~kesG~i~Gf~G 620 (1293)
T KOG0996|consen 579 LNKLRQRVEEAKSSLSSSRSRNKVLDALMRLKESGRIPGFYG 620 (1293)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcCCCCcccc
Confidence 88877765 57788999999999 556778776666655
No 14
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.90 E-value=0.0081 Score=62.72 Aligned_cols=102 Identities=11% Similarity=0.177 Sum_probs=67.4
Q ss_pred hhhhhhHHHHhhHHHHHHHhHhhhh---hhHHHHHhHHHHHhhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhh
Q 012393 219 KKVGILENQLRDLEIQLQQAKVSSE---ASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELK 295 (464)
Q Consensus 219 ek~~~LE~qLkese~QLqhA~As~e---As~eqQ~mL~stikDME~vIeDLksKv~kaE~rae~~E~kc~~LsEtN~eLn 295 (464)
.++..|+.++..++.|+........ ....+-..+...+..++.-|...++.+.....+...++....-|...+.+++
T Consensus 299 ~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~ 378 (562)
T PHA02562 299 DRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNA 378 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchH
Confidence 4556666666666666655554444 3333344456677777777777777777766667777777777777788888
Q ss_pred hhhhhhhhHHHHHHHhhHHHHHHHH
Q 012393 296 NKQSFMRDKIKILESSLNRANIEKA 320 (464)
Q Consensus 296 eELsflrskl~~LE~sL~~A~~~K~ 320 (464)
++|..+..++..+....+....++.
T Consensus 379 ~~l~~l~~~l~~~~~~~~~~~ke~~ 403 (562)
T PHA02562 379 EELAKLQDELDKIVKTKSELVKEKY 403 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877777777777666665555543
No 15
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=97.79 E-value=0.17 Score=62.12 Aligned_cols=134 Identities=18% Similarity=0.239 Sum_probs=80.1
Q ss_pred hhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhhhhhhh
Q 012393 221 VGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSF 300 (464)
Q Consensus 221 ~~~LE~qLkese~QLqhA~As~eAs~eqQ~mL~stikDME~vIeDLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsf 300 (464)
..-|+++++.-+.++.+..+-++--+..=+.+-..|++++.-|.||...+...+.....+|. ...+|..|+..
T Consensus 1064 ~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek-------~r~dL~~ele~ 1136 (1930)
T KOG0161|consen 1064 KEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAER-------QRRDLSEELEE 1136 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 55566666666666666665555444333344556777777777777777666655333333 35666677777
Q ss_pred hhhHHHHH-HHhhHHHH--HHHHhhH--------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 012393 301 MRDKIKIL-ESSLNRAN--IEKAASA--------KEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLL 361 (464)
Q Consensus 301 lrskl~~L-E~sL~~A~--~~K~~Ta--------kdI~~~tK~i~dLV~qLa~ERErL~~Qissl~~eNkiL 361 (464)
+..++++. .....+.+ ..+..-. ++....-..+.++...++..+..|..|+..+-+.+.-|
T Consensus 1137 l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr~~~~~~~~el~~qle~l~~~k~~l 1208 (1930)
T KOG0161|consen 1137 LKEELEEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIEELRKKHADSLAELQEQLEQLQKDKAKL 1208 (1930)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77776665 22222222 1111111 12233356778888888999999999988887665554
No 16
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.71 E-value=0.022 Score=64.24 Aligned_cols=207 Identities=25% Similarity=0.320 Sum_probs=125.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhh----HHHHHHHh
Q 012393 133 MKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTN----LELSEEIN 208 (464)
Q Consensus 133 L~eKV~sLEeQLkese~Ql~~akas~Ea~~~~isdmEnvIedLK~kVskAESRAe~AEskc~lLteTN----~ELneEL~ 208 (464)
|+-=|..|--.|.+.+.++....++.+..+++.+.+..-|.+|++.+...+.+....-.+...|.+++ -+|..+-.
T Consensus 341 Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~ 420 (775)
T PF10174_consen 341 LQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKE 420 (775)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444555555555555555566666666666666666666666666655555544444333 22333322
Q ss_pred hhhcCCCCc------------------------------------------------chhhhhhHHHHhhHHHHHHHhH-
Q 012393 209 FLKGNNDSN------------------------------------------------TKKVGILENQLRDLEIQLQQAK- 239 (464)
Q Consensus 209 ~Lks~~s~~------------------------------------------------~ek~~~LE~qLkese~QLqhA~- 239 (464)
-|.+++++. .-++.+|++.|.+-++||.-++
T Consensus 421 Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~ke 500 (775)
T PF10174_consen 421 RLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKELSEKELQLEDAKE 500 (775)
T ss_pred HHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhh
Confidence 222211110 3456777777777777777666
Q ss_pred --hhhhhhHHHHHhHHHHHhhHHHHHHHHHhhhhhhhhhhhhh------hhhhhhhhccchhhhhhhhhhhhHHHHHHHh
Q 012393 240 --VSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESV------EEQCIVLSEDNFELKNKQSFMRDKIKILESS 311 (464)
Q Consensus 240 --As~eAs~eqQ~mL~stikDME~vIeDLksKv~kaE~rae~~------E~kc~~LsEtN~eLneELsflrskl~~LE~s 311 (464)
.+..++++++ ++-|+.++.-++-.+.|+.+.++..+.+ -..|..|-..+....++.+-.++.|+.|=..
T Consensus 501 e~s~l~s~~~K~---~s~i~~l~I~lEk~rek~~kl~~ql~k~~~~~e~~~r~~~Le~ev~~~~ee~~kaq~EVERLl~~ 577 (775)
T PF10174_consen 501 EASKLASSQEKK---DSEIERLEIELEKKREKHEKLEKQLEKLRANAELRDRIQQLEQEVTRYREESEKAQAEVERLLDI 577 (775)
T ss_pred HHHHHhhccchh---hhHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344443 5778888888888888887777776551 1234444444555556666667888889999
Q ss_pred hHHHHHHHHhhHHHHHHHhHHHHHHHHHHHH
Q 012393 312 LNRANIEKAASAKEVNHRTKLMMEMVMQLAT 342 (464)
Q Consensus 312 L~~A~~~K~~TakdI~~~tK~i~dLV~qLa~ 342 (464)
|+.+..+|..+-+.|+--.+.+++.-++++.
T Consensus 578 L~~~E~EK~~ke~ki~~LekeLek~~~~~~~ 608 (775)
T PF10174_consen 578 LREAENEKNDKEKKIGELEKELEKAQMHLAK 608 (775)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhccchhh
Confidence 9999999999988888877776665555543
No 17
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.69 E-value=0.029 Score=64.20 Aligned_cols=214 Identities=24% Similarity=0.330 Sum_probs=141.9
Q ss_pred cccccchhHHHHHHHhHHHHHhh----------hhHHHHHhhhc--Cchhhh-hHHHHHHHHHHHHHHHHHHHhhhhhch
Q 012393 92 NGSLQRESELKSKLGDFIEQLKA----------KDMVLQKLEST--KNSEVL-TMKEKVKSLEEQLKESEIRLQNANACF 158 (464)
Q Consensus 92 ~as~~REseLksKLk~s~EQLe~----------k~~~Lekl~~s--~~SE~~-sL~eKV~sLEeQLkese~Ql~~akas~ 158 (464)
..+..-|-+|+..+.+..|.|+. |=.+|+++.-- .--||. .+..+.-+|+++|.+.......|-+-.
T Consensus 220 ~saskte~eLr~QvrdLtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~k 299 (1243)
T KOG0971|consen 220 PSASKTEEELRAQVRDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAK 299 (1243)
T ss_pred CccccchHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566666666666666664 11344433221 124443 367788899999999888877777777
Q ss_pred hhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHHHhhhhcC----CCCcchhhhhhH-HHHhhHHH
Q 012393 159 QTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGN----NDSNTKKVGILE-NQLRDLEI 233 (464)
Q Consensus 159 Ea~~~~isdmEnvIedLK~kVskAESRAe~AEskc~lLteTN~ELneEL~~Lks~----~s~~~ek~~~LE-~qLkese~ 233 (464)
+....+|+|.-..||=+--.--=||-||++-.-....|+|-|.+|..+|-.||.- |+ ..-=.++-+ +||...+.
T Consensus 300 e~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~-~~~~~ss~qfkqlEqqN~ 378 (1243)
T KOG0971|consen 300 ERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGS-DGQAASSYQFKQLEQQNA 378 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCcccchHHHHHHHHHHH
Confidence 7788899988888888877777899999999999999999999999999998853 21 100111111 22222222
Q ss_pred HHHHhH----------------hhhhhhH--------HHHHh-HHHHHhhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhh
Q 012393 234 QLQQAK----------------VSSEASQ--------EQQSM-LYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLS 288 (464)
Q Consensus 234 QLqhA~----------------As~eAs~--------eqQ~m-L~stikDME~vIeDLksKv~kaE~rae~~E~kc~~Ls 288 (464)
.|-.|. +.-+.-. ..|.. |...+..||..|-|||..|--| -.||.=...|+
T Consensus 379 rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAA----lGAE~MV~qLt 454 (1243)
T KOG0971|consen 379 RLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAA----LGAEEMVEQLT 454 (1243)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hcHHHHHHHHH
Confidence 232222 2211111 12222 2336778888888888888644 35677788999
Q ss_pred ccchhhhhhhhhhhhHHHHHHH
Q 012393 289 EDNFELKNKQSFMRDKIKILES 310 (464)
Q Consensus 289 EtN~eLneELsflrskl~~LE~ 310 (464)
+.|++|.+-+.-|+--+++||+
T Consensus 455 dknlnlEekVklLeetv~dlEa 476 (1243)
T KOG0971|consen 455 DKNLNLEEKVKLLEETVGDLEA 476 (1243)
T ss_pred hhccCHHHHHHHHHHHHHHHHH
Confidence 9999999999999988888864
No 18
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.59 E-value=0.075 Score=62.43 Aligned_cols=37 Identities=8% Similarity=0.258 Sum_probs=22.7
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHH
Q 012393 127 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQE 163 (464)
Q Consensus 127 ~SE~~sL~eKV~sLEeQLkese~Ql~~akas~Ea~~~ 163 (464)
..+++.+.+++..++.++.+...++....+..+....
T Consensus 743 ~~eip~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~ 779 (1311)
T TIGR00606 743 EKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMP 779 (1311)
T ss_pred HhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777777666665555555444333
No 19
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.47 E-value=0.077 Score=51.96 Aligned_cols=40 Identities=13% Similarity=0.111 Sum_probs=25.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH-HHHHh
Q 012393 327 NHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLL-VEKLQ 366 (464)
Q Consensus 327 ~~~tK~i~dLV~qLa~ERErL~~Qissl~~eNkiL-~~k~k 366 (464)
+....-+...+.++=.|...+..++.....+..-| ..|+.
T Consensus 254 ~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~ 294 (312)
T PF00038_consen 254 DEEREEYQAEIAELEEELAELREEMARQLREYQELLDVKLA 294 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445556666777777777777777777666555 55654
No 20
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.35 E-value=0.12 Score=58.95 Aligned_cols=269 Identities=20% Similarity=0.265 Sum_probs=159.0
Q ss_pred HHHHHHHHHHHhhcchHHHHhhhhHHHhhhhhHHhhhccccccchh----------HHHHHHHhHHHHHhhhhHHHHHhh
Q 012393 54 EAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRES----------ELKSKLGDFIEQLKAKDMVLQKLE 123 (464)
Q Consensus 54 Eaa~~~~eR~~EAENasEvL~G~Skel~gkLq~~Qf~L~as~~REs----------eLksKLk~s~EQLe~k~~~Lekl~ 123 (464)
+.+++.-.|.+.|+|..+-|+..=..+..++=.-+ -||-|-+-|+ -++.-.---+++|.+.++.+--|.
T Consensus 34 es~edlk~r~L~aeniiqdlrserdalhe~lvdka-glneSviie~sk~vstqetriyRrdv~llEddlk~~~sQiriLQ 112 (1265)
T KOG0976|consen 34 ESHEDLKKRLLDAENIIQDLRSERDALHESLVDKA-GLNESVIIEQSKKVSTQETRIYRRDVNLLEDDLKHHESQIRILQ 112 (1265)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh-hccchhhhhhcchhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 55677888999999999988877766666653211 1222222222 122222223344444443333333
Q ss_pred hc---CchhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHh----hhHHHHHHHHHHHHhhhhhhhhHHHHHHhh
Q 012393 124 ST---KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLN----EMDNFIESLKESLYGAESRAESAEEKVTQL 196 (464)
Q Consensus 124 ~s---~~SE~~sL~eKV~sLEeQLkese~Ql~~akas~Ea~~~~is----dmEnvIedLK~kVskAESRAe~AEskc~lL 196 (464)
-+ ..+|-++|++-+.-++.++|+.+..+.+..+........++ +.-.+-++|+ .+|+.|
T Consensus 113 n~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~--------------nk~~~l 178 (1265)
T KOG0976|consen 113 NKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLH--------------DKNEEL 178 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHh--------------hhhhHH
Confidence 32 46888899999999999999999988888877665544444 3333444444 578999
Q ss_pred hhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHH-HhHhhhhhhHH---HHHhHHH---------HHhhHH---
Q 012393 197 TDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQ-QAKVSSEASQE---QQSMLYS---------AIWDME--- 260 (464)
Q Consensus 197 teTN~ELneEL~~Lks~~s~~~ek~~~LE~qLkese~QLq-hA~As~eAs~e---qQ~mL~s---------tikDME--- 260 (464)
++-|.|++..+..--.- -..||..++.++.-+- .-.-+-+-++. -|+.+.. ++--+-
T Consensus 179 t~~~~q~~tkl~e~~~e-------n~~le~k~~k~~e~~~~nD~~sle~~~~q~~tq~vl~ev~QLss~~q~ltp~rk~~ 251 (1265)
T KOG0976|consen 179 NEFNMEFQTKLAEANRE-------KKALEEKLEKFKEDLIEKDQKSLELHKDQENTQKVLKEVMQLSSQKQTLTPLRKTC 251 (1265)
T ss_pred hHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhhhh
Confidence 99999988866543221 1223333332221110 00011111111 1111111 111111
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHhhHHHHHHHhHHHHHHHHHH
Q 012393 261 TLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQL 340 (464)
Q Consensus 261 ~vIeDLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrskl~~LE~sL~~A~~~K~~TakdI~~~tK~i~dLV~qL 340 (464)
++|+++ +--.+--|+-.+++---|--.|.-|..|+|-..-+|..++.-|+.....-....-|+.-.||++.--+|+|
T Consensus 252 s~i~E~---d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkl 328 (1265)
T KOG0976|consen 252 SMIEEQ---DMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKL 328 (1265)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 222222 22222334455666666777899999999999999999999999998888888889999999998888888
Q ss_pred HHHHHHH
Q 012393 341 ATQRELI 347 (464)
Q Consensus 341 a~ERErL 347 (464)
..+.--|
T Consensus 329 trqkadi 335 (1265)
T KOG0976|consen 329 TRQKADI 335 (1265)
T ss_pred HHHHHHH
Confidence 7765433
No 21
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=97.34 E-value=0.34 Score=59.18 Aligned_cols=243 Identities=19% Similarity=0.219 Sum_probs=141.7
Q ss_pred hhhhhHHHhHHHHhhhHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHhhcchHHHHhhhhHHHhhhhhHHhhhccccccch
Q 012393 19 ARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRE 98 (464)
Q Consensus 19 A~e~dLEkkL~es~~~eeeLk~kL~~~eqE~~~lEEaa~~~~eR~~EAENasEvL~G~Skel~gkLq~~Qf~L~as~~RE 98 (464)
++..-|++.+...+.-...++..| ..++......-+|+=-..|.++.+++.-..|..|-+.+|..+.-.-++=
T Consensus 654 ~~~~~l~e~~~~l~~ev~~ir~~l-------~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~ 726 (1822)
T KOG4674|consen 654 ENLKKLQEDFDSLQKEVTAIRSQL-------EKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQSTISKQEQTV 726 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444544444444444444 3445556666778888889999999999999999999998888777777
Q ss_pred hHHHHHHHhHHHHHhhhhHHHHHhhhcC----------chhhhhHHH-------------------------HHHHHHHH
Q 012393 99 SELKSKLGDFIEQLKAKDMVLQKLESTK----------NSEVLTMKE-------------------------KVKSLEEQ 143 (464)
Q Consensus 99 seLksKLk~s~EQLe~k~~~Lekl~~s~----------~SE~~sL~e-------------------------KV~sLEeQ 143 (464)
..+.+-|-.|-++++.-+..+..|.+-+ ..|+.+|.- ....+|.+
T Consensus 727 ~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~ 806 (1822)
T KOG4674|consen 727 HTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESR 806 (1822)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888888777777666651 122222222 22233444
Q ss_pred HHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHHHhhhhcCCCCcchhhhh
Q 012393 144 LKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGI 223 (464)
Q Consensus 144 Lkese~Ql~~akas~Ea~~~~isdmEnvIedLK~kVskAESRAe~AEskc~lLteTN~ELneEL~~Lks~~s~~~ek~~~ 223 (464)
+++..--++.++-. .+++..++..++.++...+-.|.++.+........+-..+..+...++-|.. |+.-
T Consensus 807 i~eL~~el~~lk~k---lq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~-------k~~e 876 (1822)
T KOG4674|consen 807 IKELERELQKLKKK---LQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEI-------KLSE 876 (1822)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH
Confidence 44444444444443 3445555555666666666666666666666666665555555555555555 3666
Q ss_pred hHHHHhhHHHHHHHhHh---hhhhhHHHHHhHHHHHhhHHHHHHHHHhhhhhhhhhhhhhhhh
Q 012393 224 LENQLRDLEIQLQQAKV---SSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQ 283 (464)
Q Consensus 224 LE~qLkese~QLqhA~A---s~eAs~eqQ~mL~stikDME~vIeDLksKv~kaE~rae~~E~k 283 (464)
|+++|+..+.|...--. .-++... ..++++...=|+||+.++-.+.+....+.+.
T Consensus 877 L~k~l~~~~~~~~~l~~~~~~~d~~~~-----~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~ 934 (1822)
T KOG4674|consen 877 LEKRLKSAKTQLLNLDSKSSNEDATIL-----EDTLRKELEEITDLKEELTDALSQIREYQEE 934 (1822)
T ss_pred HHHHHHHhHHHHhhccccchhhhhhhh-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666665543332 2233322 2234444444555555554444444444333
No 22
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=97.30 E-value=0.31 Score=59.49 Aligned_cols=316 Identities=21% Similarity=0.257 Sum_probs=155.0
Q ss_pred hHHHhHHHHhhhHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHhhcchHHHHhhhhHHHhhhhhHHhhhccccccchhHHH
Q 012393 23 DLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELK 102 (464)
Q Consensus 23 dLEkkL~es~~~eeeLk~kL~~~eqE~~~lEEaa~~~~eR~~EAENasEvL~G~Skel~gkLq~~Qf~L~as~~REseLk 102 (464)
++|.++.+....-..|+.+ ++++...+.+...+..--+-.|-|....+......++.=+-..+-+..-...+=++|.
T Consensus 802 ~~e~~i~eL~~el~~lk~k---lq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~ 878 (1822)
T KOG4674|consen 802 KCESRIKELERELQKLKKK---LQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELE 878 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444333333333333 3555555555555555555555666666665555555555555555544444444555
Q ss_pred HHHHhHHHHHhhhhHH--HHHhhhcCchhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHH-
Q 012393 103 SKLGDFIEQLKAKDMV--LQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESL- 179 (464)
Q Consensus 103 sKLk~s~EQLe~k~~~--Lekl~~s~~SE~~sL~eKV~sLEeQLkese~Ql~~akas~Ea~~~~isdmEnvIedLK~kV- 179 (464)
.+|+....+....+.- -+..+- ..+.+....+++..|..+|+.+..++. .+++....++..++..|...
T Consensus 879 k~l~~~~~~~~~l~~~~~~~d~~~-~~~~Lr~~~eq~~~l~~~L~~a~s~i~-------~yqe~~~s~eqsl~~~ks~ld 950 (1822)
T KOG4674|consen 879 KRLKSAKTQLLNLDSKSSNEDATI-LEDTLRKELEEITDLKEELTDALSQIR-------EYQEEYSSLEQSLESVKSELD 950 (1822)
T ss_pred HHHHHhHHHHhhccccchhhhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 5555444444433321 111110 123333444444444444444444433 33333333443333333333
Q ss_pred ---HhhhhhhhhHHHHHHhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhH-HHHHhHHHH
Q 012393 180 ---YGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQ-EQQSMLYSA 255 (464)
Q Consensus 180 ---skAESRAe~AEskc~lLteTN~ELneEL~~Lks~~s~~~ek~~~LE~qLkese~QLqhA~As~eAs~-eqQ~mL~st 255 (464)
.+++.+.+.-..+.+.|-.-=++|..++..|++. ++.+.+..+.++.+++.-..--+ +-++ +...
T Consensus 951 e~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e----------~~~~~k~~e~~~~~~~~e~~sl~ne~~~-~~~~ 1019 (1822)
T KOG4674|consen 951 ETRLELEAKIESLHKKITSLEEELSELEKEIENLREE----------LELSTKGKEDKLLDLSREISSLQNELKS-LLKA 1019 (1822)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HhccccchhhhHHHHHHHhHHHHHHHHH-HHHH
Confidence 3445555555555555544445555555555543 23333333444444443222111 2122 4456
Q ss_pred HhhHHHHHHHHHhhhhhhhhhh----hhhhhhhhhhhc---cchhhhhhhhhhhhHHHHHHHhhHHHHHHHHhhHHHHHH
Q 012393 256 IWDMETLIEDLKSKVSKAESKT----ESVEEQCIVLSE---DNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNH 328 (464)
Q Consensus 256 ikDME~vIeDLksKv~kaE~ra----e~~E~kc~~LsE---tN~eLneELsflrskl~~LE~sL~~A~~~K~~TakdI~~ 328 (464)
++++...|.+++.-+.....-+ ..||..-+-+++ +=-+|.++++-+-+.+..|..+...+...-..-.+++..
T Consensus 1020 ~s~~~~~~~~~k~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~~~Lk~~~~~~~~~l~e~~~~w~E 1099 (1822)
T KOG4674|consen 1020 ASQANEQIEDLQNDLKTETEQLRKAQSKYESELVQHADLTQKLIKLREEFAKCNDELLKLKKSRESRHALLSEQERDWSE 1099 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhhcccchHH
Confidence 7777777777776655442222 233333333322 223344455555555555555555555555555566666
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhh
Q 012393 329 RTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQY 367 (464)
Q Consensus 329 ~tK~i~dLV~qLa~ERErL~~Qissl~~eNkiL~~k~k~ 367 (464)
+.+.+++ |+.-+..+|.+|-..|++|...+-.
T Consensus 1100 ~~~~Leq-------e~~~~~~~~~~L~~qNslLh~qie~ 1131 (1822)
T KOG4674|consen 1100 KEDALEQ-------EVNELKKRIESLEKQNSLLHDQFEE 1131 (1822)
T ss_pred HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665554 5667788899999999999888764
No 23
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.24 E-value=0.48 Score=52.08 Aligned_cols=81 Identities=19% Similarity=0.222 Sum_probs=42.6
Q ss_pred hhhhhhHHHhHHHHhhhHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHhhcchHHHHhhhhHHHhhhhhHHhhhccccccc
Q 012393 18 LARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQR 97 (464)
Q Consensus 18 lA~e~dLEkkL~es~~~eeeLk~kL~~~eqE~~~lEEaa~~~~eR~~EAENasEvL~G~Skel~gkLq~~Qf~L~as~~R 97 (464)
+..-..|++.....+.....|+..|.+..++...|.....++....-....=.+.|.-...++..|+...+.++....++
T Consensus 156 ~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk 235 (546)
T PF07888_consen 156 LKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQK 235 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334555555555666666666666666666666555555544433333333445555555555555555555444444
Q ss_pred h
Q 012393 98 E 98 (464)
Q Consensus 98 E 98 (464)
.
T Consensus 236 ~ 236 (546)
T PF07888_consen 236 E 236 (546)
T ss_pred H
Confidence 3
No 24
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.20 E-value=0.13 Score=55.72 Aligned_cols=197 Identities=22% Similarity=0.255 Sum_probs=131.9
Q ss_pred hHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHhhcchHHHHhhhhHHHhhhhhHHhhhccccccchhHHHHHHHhHH-HHH
Q 012393 34 NEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFI-EQL 112 (464)
Q Consensus 34 ~eeeLk~kL~~~eqE~~~lEEaa~~~~eR~~EAENasEvL~G~Skel~gkLq~~Qf~L~as~~REseLksKLk~s~-EQL 112 (464)
....|..+|...+.....+++... .|-|.+|.....-+......+-..+..+= .|-.+++.-. .||
T Consensus 166 a~~~le~~l~~~e~~f~~f~~l~~--~Gd~~~A~e~l~~l~~~~~~l~~~~~~iP-----------~l~~~~~~~~P~ql 232 (569)
T PRK04778 166 ALDELEKQLENLEEEFSQFVELTE--SGDYVEAREILDQLEEELAALEQIMEEIP-----------ELLKELQTELPDQL 232 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHhhHHH
Confidence 345666677777777777777666 67777776655555555444444444331 1223333322 333
Q ss_pred hhhhHHHHHhhhc--------CchhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhh
Q 012393 113 KAKDMVLQKLEST--------KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAES 184 (464)
Q Consensus 113 e~k~~~Lekl~~s--------~~SE~~sL~eKV~sLEeQLkese~Ql~~akas~Ea~~~~isdmEnvIedLK~kVskAES 184 (464)
..-..--.+|... -++++..+.+++......|... .+..+.+..+....+|.+|-.+++.=......++.
T Consensus 233 ~el~~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l--~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek 310 (569)
T PRK04778 233 QELKAGYRELVEEGYHLDHLDIEKEIQDLKEQIDENLALLEEL--DLDEAEEKNEEIQERIDQLYDILEREVKARKYVEK 310 (569)
T ss_pred HHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322222222222 2466666666666666665544 35677777778889999999999999999999999
Q ss_pred hhhhHHHHHHhhhhhhHHHHHHHhhhhcC---CCCcchhhhhhHHHHhhHHHHHHHhHhhhhhh
Q 012393 185 RAESAEEKVTQLTDTNLELSEEINFLKGN---NDSNTKKVGILENQLRDLEIQLQQAKVSSEAS 245 (464)
Q Consensus 185 RAe~AEskc~lLteTN~ELneEL~~Lks~---~s~~~ek~~~LE~qLkese~QLqhA~As~eAs 245 (464)
..........-+.+.|.+|..|+..|+.+ ...+.+.+..++++|++.+.++......+...
T Consensus 311 ~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~ 374 (569)
T PRK04778 311 NSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQ 374 (569)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999987 22356778889999998888877655444433
No 25
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.15 E-value=0.011 Score=53.94 Aligned_cols=128 Identities=31% Similarity=0.362 Sum_probs=91.5
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHH--
Q 012393 173 ESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQS-- 250 (464)
Q Consensus 173 edLK~kVskAESRAe~AEskc~lLteTN~ELneEL~~Lks~~s~~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~-- 250 (464)
..||-....|..|++.++++++.|...|.++..++..|.. |...||.+|..++.+|..++..++.+-...+
T Consensus 3 ~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~-------K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~ 75 (143)
T PF12718_consen 3 QALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQK-------KNQQLEEELDKLEEQLKEAKEKLEESEKRKSNA 75 (143)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhH
Confidence 4678889999999999999999999999999999999987 4899999999999999999987776642111
Q ss_pred -hHHHHHhhHH-------HHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhhhhhhhhhhHHHHHHHhhHH
Q 012393 251 -MLYSAIWDME-------TLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNR 314 (464)
Q Consensus 251 -mL~stikDME-------~vIeDLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrskl~~LE~sL~~ 314 (464)
-|-..|.-|| .-..+...|+..+..+|+++|-++..|-.....+ ..|++.++..+..
T Consensus 76 E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~-------E~k~eel~~k~~~ 140 (143)
T PF12718_consen 76 EQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQW-------EEKYEELEEKYKE 140 (143)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHH-------HHHHHHHHHHHHH
Confidence 1222333333 4444455566666667777777766655444444 5555555555443
No 26
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.94 E-value=0.9 Score=50.01 Aligned_cols=280 Identities=20% Similarity=0.228 Sum_probs=134.1
Q ss_pred HHHhHHHHhhhHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHhhcchHHHHhhhhHHHhhhhhHHhhhccccccchhHHHH
Q 012393 24 LEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKS 103 (464)
Q Consensus 24 LEkkL~es~~~eeeLk~kL~~~eqE~~~lEEaa~~~~eR~~EAENasEvL~G~Skel~gkLq~~Qf~L~as~~REseLks 103 (464)
|+.++....+--++|.......+.+...|.+....+-.-+-....-.+-|...-+++....+.+.-... .|+.
T Consensus 141 lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~-------~L~~ 213 (546)
T PF07888_consen 141 LQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERE-------SLKE 213 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH
Confidence 556666655555666666666666666666666665555555555555555555555554444332222 2222
Q ss_pred HHHhHHHHHhhhhHHHHHhhhc---CchhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHH
Q 012393 104 KLGDFIEQLKAKDMVLQKLEST---KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLY 180 (464)
Q Consensus 104 KLk~s~EQLe~k~~~Lekl~~s---~~SE~~sL~eKV~sLEeQLkese~Ql~~akas~Ea~~~~isdmEnvIedLK~kVs 180 (464)
.+..+..++...+..+..+... .+.+...+.+....+|..-.+...+|....+.....+......+--++.||+.+.
T Consensus 214 q~~e~~~ri~~LEedi~~l~qk~~E~e~~~~~lk~~~~elEq~~~eLk~rLk~~~~~~~~~~~~~~~~~~e~e~LkeqLr 293 (546)
T PF07888_consen 214 QLAEARQRIRELEEDIKTLTQKEKEQEKELDKLKELKAELEQLEAELKQRLKETVVQLKQEETQAQQLQQENEALKEQLR 293 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Confidence 2222222222222222222111 0111222222222222211122222332222222222223344445678999999
Q ss_pred hhhhhhhhHHHHHHhhhhhhHHHHHHHhhhhcCCCCcchh----hhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHH
Q 012393 181 GAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKK----VGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAI 256 (464)
Q Consensus 181 kAESRAe~AEskc~lLteTN~ELneEL~~Lks~~s~~~ek----~~~LE~qLkese~QLqhA~As~eAs~eqQ~mL~sti 256 (464)
.|+.+.+.++.+...|..-. ..+...|++..+.-.. +..|-.+|.+...+|.++++- -.+++|... -++
T Consensus 294 ~~qe~lqaSqq~~~~L~~EL----~~~~~~RDrt~aeLh~aRLe~aql~~qLad~~l~lke~~~q--~~qEk~~l~-~~~ 366 (546)
T PF07888_consen 294 SAQEQLQASQQEAELLRKEL----SDAVNVRDRTMAELHQARLEAAQLKLQLADASLELKEGRSQ--WAQEKQALQ-HSA 366 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH-HHH
Confidence 99999999998887776542 2233333332211111 233445555555555555432 234444422 222
Q ss_pred hhHHHHHHHHHhhhhhhhh-------hhhhhhhhhhhhhccchhhhhhhhhhhhHHHHHHHhhHHHHHHHH
Q 012393 257 WDMETLIEDLKSKVSKAES-------KTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKA 320 (464)
Q Consensus 257 kDME~vIeDLksKv~kaE~-------rae~~E~kc~~LsEtN~eLneELsflrskl~~LE~sL~~A~~~K~ 320 (464)
.-...-|++|+.-+.+++. +-..++.+.+-.++.|.- -|+-.|-.+..|+++|..|--+|.
T Consensus 367 e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~D~n~v---qlsE~~rel~Elks~lrv~qkEKE 434 (546)
T PF07888_consen 367 EADKDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEKDCNRV---QLSENRRELQELKSSLRVAQKEKE 434 (546)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3234456666666655543 223455555666666631 234445566667777777766664
No 27
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=96.91 E-value=0.48 Score=51.43 Aligned_cols=118 Identities=21% Similarity=0.270 Sum_probs=86.0
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHH
Q 012393 127 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEE 206 (464)
Q Consensus 127 ~SE~~sL~eKV~sLEeQLkese~Ql~~akas~Ea~~~~isdmEnvIedLK~kVskAESRAe~AEskc~lLteTN~ELneE 206 (464)
+.++..+.+++..+...|+.. .+..|....+....+|.+|=.+++.=-..-...+.....-......+...|.+|..|
T Consensus 251 ~~~i~~i~~~l~~~~~~L~~l--~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e 328 (560)
T PF06160_consen 251 EEEIEQIEEQLEEALALLKNL--ELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEE 328 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666433 345666666667777777777776655566666777777788888899999999999
Q ss_pred HhhhhcC---CCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhH
Q 012393 207 INFLKGN---NDSNTKKVGILENQLRDLEIQLQQAKVSSEASQ 246 (464)
Q Consensus 207 L~~Lks~---~s~~~ek~~~LE~qLkese~QLqhA~As~eAs~ 246 (464)
+..++.+ ...+.+++..++++++....+...........+
T Consensus 329 ~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~ 371 (560)
T PF06160_consen 329 LERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQ 371 (560)
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999988 222467889999999998888887776666554
No 28
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.86 E-value=0.53 Score=46.17 Aligned_cols=244 Identities=18% Similarity=0.229 Sum_probs=136.3
Q ss_pred HHHhHHHHhhhHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHhhcchHHHHhhhhHHHhhhhhHHhhhccccccchhHHHH
Q 012393 24 LEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKS 103 (464)
Q Consensus 24 LEkkL~es~~~eeeLk~kL~~~eqE~~~lEEaa~~~~eR~~EAENasEvL~G~Skel~gkLq~~Qf~L~as~~REseLks 103 (464)
++..+.+++....++...-..++-+...+...+.++-.||.+.-.....+.+.... +.-++......=.++..
T Consensus 52 ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~-------lrk~ld~~~~~r~~le~ 124 (312)
T PF00038_consen 52 YEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELES-------LRKDLDEETLARVDLEN 124 (312)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hhhhhhhhhhhHhHHHH
Confidence 67777777777777777777777777777777777777777664333333333333 33444444444456666
Q ss_pred HHHhHHHHHhhhhHH----HHHhhhc----CchhhhhHHHHHHHHHHHHH----HHHHHHhhhhhchhhhHHHHhhhHHH
Q 012393 104 KLGDFIEQLKAKDMV----LQKLEST----KNSEVLTMKEKVKSLEEQLK----ESEIRLQNANACFQTSQEQLNEMDNF 171 (464)
Q Consensus 104 KLk~s~EQLe~k~~~----Lekl~~s----~~SE~~sL~eKV~sLEeQLk----ese~Ql~~akas~Ea~~~~isdmEnv 171 (464)
++....++|...... +..|... ...++-. -.-..|..-|+ +|+..+...+...++ .+..-
T Consensus 125 ~i~~L~eEl~fl~~~heeEi~~L~~~~~~~~~~e~~~--~~~~dL~~~L~eiR~~ye~~~~~~~~e~e~------~y~~k 196 (312)
T PF00038_consen 125 QIQSLKEELEFLKQNHEEEIEELREQIQSSVTVEVDQ--FRSSDLSAALREIRAQYEEIAQKNREELEE------WYQSK 196 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSTT------------------HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhccccccceeecc--cccccchhhhhhHHHHHHHHHhhhhhhhhh------hcccc
Confidence 666666666653322 1111111 0001000 00111222222 233333333333222 22333
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHh
Q 012393 172 IESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSM 251 (464)
Q Consensus 172 IedLK~kVskAESRAe~AEskc~lLteTN~ELneEL~~Lks~~s~~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~m 251 (464)
+.+++..+....+.+..+...+.-+...=..|..+|..|++. -..||++|.+.+.++.... ..
T Consensus 197 ~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~-------~~~Le~~l~~le~~~~~~~----------~~ 259 (312)
T PF00038_consen 197 LEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAK-------NASLERQLRELEQRLDEER----------EE 259 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH----------HH
T ss_pred cccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccc-------hhhhhhhHHHHHHHHHHHH----------HH
Confidence 455555555555555555555555555556777778888874 6788888888655554322 12
Q ss_pred HHHHHhhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhhhhhhhhhhHHH
Q 012393 252 LYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIK 306 (464)
Q Consensus 252 L~stikDME~vIeDLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrskl~ 306 (464)
+-..|.++|.-|.+++..+...-.. +-.|-+.++-|..||+-||.=|+
T Consensus 260 ~~~~i~~le~el~~l~~~~~~~~~e-------y~~Ll~~K~~Ld~EIatYR~LLE 307 (312)
T PF00038_consen 260 YQAEIAELEEELAELREEMARQLRE-------YQELLDVKLALDAEIATYRKLLE 307 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhhhccchhHHHHHHHHHHHHHH-------HHHHHHHHHhHHHHHHHHHHHHh
Confidence 3345666666666666666554444 88899999999999999997554
No 29
>PLN02939 transferase, transferring glycosyl groups
Probab=96.77 E-value=0.054 Score=62.57 Aligned_cols=200 Identities=25% Similarity=0.359 Sum_probs=117.8
Q ss_pred HHHHHhhhcCchhhhhHHHHHHHHHHHHHHHHHHHhhhh-hchhhhHHHHhhhHHHHHHHHHHHHhhhh----hhhhHHH
Q 012393 117 MVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNAN-ACFQTSQEQLNEMDNFIESLKESLYGAES----RAESAEE 191 (464)
Q Consensus 117 ~~Lekl~~s~~SE~~sL~eKV~sLEeQLkese~Ql~~ak-as~Ea~~~~isdmEnvIedLK~kVskAES----RAe~AEs 191 (464)
.+++.++.- -.|--.|+-||+.||-.|.+.+.++.-+. +.. ..+ =+|.-.+.|...+..-.. -...-..
T Consensus 153 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (977)
T PLN02939 153 QALEDLEKI-LTEKEALQGKINILEMRLSETDARIKLAAQEKI---HVE--ILEEQLEKLRNELLIRGATEGLCVHSLSK 226 (977)
T ss_pred HHHHHHHHH-HHHHHHHHhhHHHHHHHhhhhhhhhhhhhhccc---cch--hhHHHHHHHhhhhhccccccccccccHHH
Confidence 344444433 34555789999999999999988864322 211 001 112223333332222111 1112245
Q ss_pred HHHhhhhhhHHHHHHHhhhhcCCCC---cchhh-------hhhHHHHhhHHHHHHHhHhhhhh-hHHHHHhHHHHHhhHH
Q 012393 192 KVTQLTDTNLELSEEINFLKGNNDS---NTKKV-------GILENQLRDLEIQLQQAKVSSEA-SQEQQSMLYSAIWDME 260 (464)
Q Consensus 192 kc~lLteTN~ELneEL~~Lks~~s~---~~ek~-------~~LE~qLkese~QLqhA~As~eA-s~eqQ~mL~stikDME 260 (464)
++..|-+.|+-|+..+.|||...+. +.+++ ..|+..|++++..+-.|.+-+-. +-.|..-++.++..++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (977)
T PLN02939 227 ELDVLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQ 306 (977)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHHHHH
Confidence 7889999999999999999987321 12333 34555677766666333322211 1134444566666666
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHhhHHHHHHHhHHHHHHHHHH
Q 012393 261 TLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQL 340 (464)
Q Consensus 261 ~vIeDLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrskl~~LE~sL~~A~~~K~~TakdI~~~tK~i~dLV~qL 340 (464)
.+.+-...++. +.+++.+.|-+| +.|+..||++|.+|+..|.++- .|+-|-.++
T Consensus 307 ~~~~~~~~~~~-----------~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~ 360 (977)
T PLN02939 307 DLLDRATNQVE-----------KAALVLDQNQDL-------RDKVDKLEASLKEANVSKFSSY--------KVELLQQKL 360 (977)
T ss_pred HHHHHHHHHHH-----------HHHHHhccchHH-------HHHHHHHHHHHHHhhHhhhhHH--------HHHHHHHHH
Confidence 66555544443 456677888888 9999999999999999998664 333344555
Q ss_pred HHHHHHHH
Q 012393 341 ATQRELIQ 348 (464)
Q Consensus 341 a~ERErL~ 348 (464)
...++||+
T Consensus 361 ~~~~~~~~ 368 (977)
T PLN02939 361 KLLEERLQ 368 (977)
T ss_pred HHHHHHHH
Confidence 55555553
No 30
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.73 E-value=2.3 Score=51.64 Aligned_cols=59 Identities=10% Similarity=0.112 Sum_probs=40.3
Q ss_pred CCchHHhhHHHHHHHHHhhhhhhHHHhHHHHhhhHHHHHhhhhhhHHHHHhHHHHHHHH
Q 012393 1 MKNADQQRHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVV 59 (464)
Q Consensus 1 mq~~eqqR~iLrmLEkSlA~e~dLEkkL~es~~~eeeLk~kL~~~eqE~~~lEEaa~~~ 59 (464)
|.+++++|.++-..=+.-.+--.-.++|.....+-.++...+...+.....|+..++..
T Consensus 275 ~r~~eERR~liEEAag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA 333 (1486)
T PRK04863 275 MRHANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAA 333 (1486)
T ss_pred hhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888887766444455556666677777777777777777777677776666554
No 31
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=96.72 E-value=0.27 Score=48.02 Aligned_cols=143 Identities=23% Similarity=0.284 Sum_probs=77.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHHHhhh
Q 012393 131 LTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFL 210 (464)
Q Consensus 131 ~sL~eKV~sLEeQLkese~Ql~~akas~Ea~~~~isdmEnvIedLK~kVskAESRAe~AEskc~lLteTN~ELneEL~~L 210 (464)
+.+.+|+..+|.||++...-.+.|....+ +-..-+--+ -..+-.||-||+.++++|..|.+.=--+...|.+|
T Consensus 56 ~kdEE~~e~~e~qLkEAk~iaE~adrK~e---EVarkL~ii----E~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l 128 (205)
T KOG1003|consen 56 QKLEEKMEAQEAQLKEAKHIAEKADRKYE---EVARKLVII----EGELERAEERAEAAESQSEELEEDLRILDSNLKSL 128 (205)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHH
Confidence 34455555555555555544444444322 222222111 23455788999999999987766444443333333
Q ss_pred hcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhcc
Q 012393 211 KGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSED 290 (464)
Q Consensus 211 ks~~s~~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~mL~stikDME~vIeDLksKv~kaE~rae~~E~kc~~LsEt 290 (464)
.-. -. .+.-.....+..|..|-.|+-.+++||+.+|....-|-.+
T Consensus 129 ~~~--------------ee---------------------~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke 173 (205)
T KOG1003|consen 129 SAK--------------EE---------------------KLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKE 173 (205)
T ss_pred HHH--------------HH---------------------HHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHccc
Confidence 322 11 1112344556667777778888888888888666555555
Q ss_pred chhhhhhhhhhhhHHHHHHHhhHHH
Q 012393 291 NFELKNKQSFMRDKIKILESSLNRA 315 (464)
Q Consensus 291 N~eLneELsflrskl~~LE~sL~~A 315 (464)
=-.|-..+...+.+..++..-|+++
T Consensus 174 ~DdlE~kl~~~k~ky~~~~~eLD~~ 198 (205)
T KOG1003|consen 174 RDDLEEKLEEAKEKYEEAKKELDET 198 (205)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 5555444444444444444444443
No 32
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.67 E-value=1.8 Score=49.52 Aligned_cols=186 Identities=24% Similarity=0.319 Sum_probs=113.1
Q ss_pred CchhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHH
Q 012393 126 KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSE 205 (464)
Q Consensus 126 ~~SE~~sL~eKV~sLEeQLkese~Ql~~akas~Ea~~~~isdmEnvIedLK~kVskAESRAe~AEskc~lLteTN~ELne 205 (464)
+++|..+++-|+..++++..++...+.-.+.+.-+-+.+-+-+.+-|+.|...+..+.+-.......+.-+.+-=.-+..
T Consensus 299 k~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~ 378 (775)
T PF10174_consen 299 KKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQG 378 (775)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777777777777776666666666666666666666666666666666666655555555555555555555
Q ss_pred HHhhhhcCCCCc-------chhhhhhHHHHhhHHHHHHHhHhhhhh----h--HHHHHhHHHHHhhHHHHHHHHHhhhhh
Q 012393 206 EINFLKGNNDSN-------TKKVGILENQLRDLEIQLQQAKVSSEA----S--QEQQSMLYSAIWDMETLIEDLKSKVSK 272 (464)
Q Consensus 206 EL~~Lks~~s~~-------~ek~~~LE~qLkese~QLqhA~As~eA----s--~eqQ~mL~stikDME~vIeDLksKv~k 272 (464)
||..|++.-... -.|.+.||.+|++-+.||..++....+ . ..-+.-|..++.|-+.+|+.|...-..
T Consensus 379 Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~ 458 (775)
T PF10174_consen 379 EIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLEEQRER 458 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666652211 335778899999999999888755442 1 123345666888888888777644222
Q ss_pred hhhhhhhhhhhhhhhhccchhhhhhhhhhhhHHHHHHHhhHH
Q 012393 273 AESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNR 314 (464)
Q Consensus 273 aE~rae~~E~kc~~LsEtN~eLneELsflrskl~~LE~sL~~ 314 (464)
++.+ . -+..-.+-..|-.|..++..|.+.+.+.+.+|..
T Consensus 459 ~e~e--~-~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~ 497 (775)
T PF10174_consen 459 AEKE--R-QEELETYQKELKELKAKLESLQKELSEKELQLED 497 (775)
T ss_pred HHHH--H-HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 2211 1 1223455556666666666666666666544443
No 33
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=96.55 E-value=0.00059 Score=76.80 Aligned_cols=205 Identities=25% Similarity=0.324 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHHHhhhhcCCCC
Q 012393 137 VKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDS 216 (464)
Q Consensus 137 V~sLEeQLkese~Ql~~akas~Ea~~~~isdmEnvIedLK~kVskAESRAe~AEskc~lLteTN~ELneEL~~Lks~~s~ 216 (464)
++-+..|++++..++..+....+.....+..++.-+..|...+..+.+..++|+--+..+-..-.++.++++.|..++++
T Consensus 576 ~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee~~~~~~~a~r~rk~aE~el~e~~~~~~~l~~~~~~ 655 (859)
T PF01576_consen 576 LKKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAELEELREALEQAERARKQAESELDELQERLNELTSQNSS 655 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 34445555555555555544444444444555555555555555555556666666666666667777777777666443
Q ss_pred cchhhhhhHHHHhhHHHHHHHhHhhh------------hhhHH------HHH---hHHHHHhhHHHHHHHHHhhhhhhhh
Q 012393 217 NTKKVGILENQLRDLEIQLQQAKVSS------------EASQE------QQS---MLYSAIWDMETLIEDLKSKVSKAES 275 (464)
Q Consensus 217 ~~ek~~~LE~qLkese~QLqhA~As~------------eAs~e------qQ~---mL~stikDME~vIeDLksKv~kaE~ 275 (464)
-..-..-||..+..++..|+.+...+ .+... .|. -+-+.=+.||.-|.||+.++..+|+
T Consensus 656 l~~~kr~le~~i~~l~~eleE~~~~~~~~~ek~kka~~~~~~l~~eL~~Eq~~~~~le~~k~~LE~q~keLq~rl~e~E~ 735 (859)
T PF01576_consen 656 LSEEKRKLEAEIQQLEEELEEEQSEAEAAEEKAKKAQAQAAQLAEELRQEQDHNQHLEKEKKALERQVKELQARLEEAEQ 735 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445557777777777777665322 22211 111 0112334566788888888888884
Q ss_pred hhhhhhhhhhhhhccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHH---HHHHHHHH
Q 012393 276 KTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQR---ELIQKQVY 352 (464)
Q Consensus 276 rae~~E~kc~~LsEtN~eLneELsflrskl~~LE~sL~~A~~~K~~TakdI~~~tK~i~dLV~qLa~ER---ErL~~Qis 352 (464)
- ++... ..-++.|.+|+..||+.|..-.-.+..+.+-+--.-+-+++|+.|.-.+| ++++.++-
T Consensus 736 ~---------~~~~~----k~~i~kLE~ri~eLE~~Le~E~r~~~~~~k~~rk~er~~kEl~~q~ee~~k~~~~~~d~~~ 802 (859)
T PF01576_consen 736 S---------ALKGG----KKQIAKLEARIRELEEELESEQRRRAEAQKQLRKLERRVKELQFQVEEERKNAERLQDLVD 802 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred h---------hhccc----ccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4 22221 23578899999999999999999999999999988999999999998888 45555554
Q ss_pred Hh
Q 012393 353 SL 354 (464)
Q Consensus 353 sl 354 (464)
.+
T Consensus 803 kl 804 (859)
T PF01576_consen 803 KL 804 (859)
T ss_dssp --
T ss_pred HH
Confidence 44
No 34
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=96.53 E-value=0.33 Score=49.90 Aligned_cols=97 Identities=25% Similarity=0.322 Sum_probs=74.4
Q ss_pred HHHHhhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHhhHHHHHHHhHH
Q 012393 253 YSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKL 332 (464)
Q Consensus 253 ~stikDME~vIeDLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrskl~~LE~sL~~A~~~K~~TakdI~~~tK~ 332 (464)
..-|+.||++--.=+.||.+.-.+-+++|+...-|--.|+=| |.-+++..++- ..|.-++-+|.. -
T Consensus 192 q~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LL-------rQQLddA~~K~----~~kek~ViniQ~---~ 257 (305)
T PF14915_consen 192 QCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLL-------RQQLDDAHNKA----DNKEKTVINIQD---Q 257 (305)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH----HHHHHHHhhHHH---H
Confidence 556999999999999999999999999999998888889988 44444433321 234445666654 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHh
Q 012393 333 MMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQ 366 (464)
Q Consensus 333 i~dLV~qLa~ERErL~~Qissl~~eNkiL~~k~k 366 (464)
|.|+|.+|-.|+++ |+..|-+.|+-|+.+|.
T Consensus 258 f~d~~~~L~ae~ek---q~lllEErNKeL~ne~n 288 (305)
T PF14915_consen 258 FQDIVKKLQAESEK---QVLLLEERNKELINECN 288 (305)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHhHHHHHHHH
Confidence 67889999999876 77778888888887775
No 35
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.35 E-value=2.2 Score=50.66 Aligned_cols=243 Identities=17% Similarity=0.249 Sum_probs=148.6
Q ss_pred HHhhhhhhHHHHHhHHHHHHHHHHHHH-hhcc------hHHH-HhhhhHHHhhhhhHHhhhccccccchhHHHHHHHhHH
Q 012393 38 LKLKLHHTEQVAFRMEEAAEVVWGRFL-EAEN------SAEV-LMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFI 109 (464)
Q Consensus 38 Lk~kL~~~eqE~~~lEEaa~~~~eR~~-EAEN------asEv-L~G~Skel~gkLq~~Qf~L~as~~REseLksKLk~s~ 109 (464)
..-|+....++...+++...+..+++- ++-- +... +.-..+++-.++...+--++-...+.-.++++|+.+.
T Consensus 332 ~~~ki~~~~~~~~~~~e~lk~~~ek~~~e~~~~~~k~e~~~~~~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~ 411 (1293)
T KOG0996|consen 332 SRAKIAEMQEELEKIEEGLKDENEKFDIESNEEVEKNEAVKKEIKERAKELKNKFESLKKKFQDLEREDVKREEKLKRLT 411 (1293)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666666666665554 2111 1111 3334444444555555556666666666666666665
Q ss_pred HHHhhhh----------HHHHHhhhcCchhhhhHHHHHHHHHHHHHHHHH----HHhhhhhchhhhHHHHhhhHHHHHHH
Q 012393 110 EQLKAKD----------MVLQKLESTKNSEVLTMKEKVKSLEEQLKESEI----RLQNANACFQTSQEQLNEMDNFIESL 175 (464)
Q Consensus 110 EQLe~k~----------~~Lekl~~s~~SE~~sL~eKV~sLEeQLkese~----Ql~~akas~Ea~~~~isdmEnvIedL 175 (464)
-+.+--. .+++++-+...-+.+.++..+..|++++..-+. .+...+...++..+++...+--...+
T Consensus 412 ~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~ 491 (1293)
T KOG0996|consen 412 SKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPL 491 (1293)
T ss_pred HHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence 5555433 344444333344555566666666665554443 34556666677888999999999999
Q ss_pred HHHHHhhhhhhhhHHHHHHhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHH
Q 012393 176 KESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSA 255 (464)
Q Consensus 176 K~kVskAESRAe~AEskc~lLteTN~ELneEL~~Lks~~s~~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~mL~st 255 (464)
..++-.|.++.+-|+++..+|...-..+...+..|+++ +......+. + ....
T Consensus 492 ~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~-------L~~~~~~~~-----------------e----~~~~ 543 (1293)
T KOG0996|consen 492 LKQVNEARSELDVAESELDILLSRHETGLKKVEELKGK-------LLASSESLK-----------------E----KKTE 543 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH-----------------H----HHHH
Confidence 99999999999999999999988777666666666553 222222221 2 2345
Q ss_pred HhhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhhhhhhhhhhHHHHHHHhhHHH
Q 012393 256 IWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRA 315 (464)
Q Consensus 256 ikDME~vIeDLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrskl~~LE~sL~~A 315 (464)
+.|+...|.++|.+...+++..+++.. +=-.|+.-+..+|.|++.+-++++..
T Consensus 544 l~~~k~~l~~~k~e~~~~~k~l~~~~~-------e~~~~~~~~~~~rqrveE~ks~~~~~ 596 (1293)
T KOG0996|consen 544 LDDLKEELPSLKQELKEKEKELPKLRK-------EERNLKSQLNKLRQRVEEAKSSLSSS 596 (1293)
T ss_pred HHHHHHhhhhHHHHHHHHHHhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 778888888888888888877444332 22234455566677777766655544
No 36
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=96.32 E-value=0.38 Score=47.08 Aligned_cols=174 Identities=20% Similarity=0.242 Sum_probs=138.5
Q ss_pred HHHHHhhhhhhHHHHHhHHHHHHHHHHHHHhhc-------chHHHHhhhhHHHhhhhhHHhhhccccccchhHHHHHHHh
Q 012393 35 EEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAE-------NSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGD 107 (464)
Q Consensus 35 eeeLk~kL~~~eqE~~~lEEaa~~~~eR~~EAE-------NasEvL~G~Skel~gkLq~~Qf~L~as~~REseLksKLk~ 107 (464)
..-|+.++..++++...-+|-......++-+|+ |+.-||-+.+--+-.|++..+..|+.+.+.+-+---|.+.
T Consensus 6 va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~eE 85 (205)
T KOG1003|consen 6 VAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYEE 85 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888888888888887765 6667788888888889999999999999998888888888
Q ss_pred HHHHHhhhhHHHHHhhhcCchhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhh
Q 012393 108 FIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAE 187 (464)
Q Consensus 108 s~EQLe~k~~~Lekl~~s~~SE~~sL~eKV~sLEeQLkese~Ql~~akas~Ea~~~~isdmEnvIedLK~kVskAESRAe 187 (464)
-.-+|.-.+..|+..+.. .|+--- ++..|+++++-.+.-+.+..++.+-.....-..+..|..+-+++-.||.||+
T Consensus 86 VarkL~iiE~dLE~~eer--aE~~Es--~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE 161 (205)
T KOG1003|consen 86 VARKLVIIEGELERAEER--AEAAES--QSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAE 161 (205)
T ss_pred HHHHHHHHHhHHHHHHHH--HHHHHH--HHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHH
Confidence 888888888888877664 444333 7778888888888778888888777888888999999999999999999999
Q ss_pred hHHHHHHhhhhhhHHHHHHHhhhhc
Q 012393 188 SAEEKVTQLTDTNLELSEEINFLKG 212 (464)
Q Consensus 188 ~AEskc~lLteTN~ELneEL~~Lks 212 (464)
.|+-.+.-|-.+=-.|-..+-..+.
T Consensus 162 ~aERsVakLeke~DdlE~kl~~~k~ 186 (205)
T KOG1003|consen 162 FAERRVAKLEKERDDLEEKLEEAKE 186 (205)
T ss_pred HHHHHHHHHcccHHHHHHhhHHHHH
Confidence 9997777666555555544444443
No 37
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.30 E-value=3.5 Score=48.70 Aligned_cols=157 Identities=23% Similarity=0.297 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHhhcchHHHHhhhhHHHhhhhhHHhhhccccccchhHHHHHHHhHHHHHhh-hhHHHHHhhhc------
Q 012393 53 EEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKA-KDMVLQKLEST------ 125 (464)
Q Consensus 53 EEaa~~~~eR~~EAENasEvL~G~Skel~gkLq~~Qf~L~as~~REseLksKLk~s~EQLe~-k~~~Lekl~~s------ 125 (464)
+...+..-+..-.+..+...+......+...-+..+..|.....+=.+++..+.....+|.. +|+-++=|...
T Consensus 475 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~p~~gSL~~fL~~~~p~We~ 554 (1201)
T PF12128_consen 475 DKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQLDPQKGSLLEFLRKNKPGWEQ 554 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHhCCCcHHH
Confidence 33344445555566666667777777777777777777777777777777777777777763 33333322222
Q ss_pred ---------------------------------------CchhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHh
Q 012393 126 ---------------------------------------KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLN 166 (464)
Q Consensus 126 ---------------------------------------~~SE~~sL~eKV~sLEeQLkese~Ql~~akas~Ea~~~~is 166 (464)
..|+....-+ .|+.++...+.+++.+....++.+..+.
T Consensus 555 tIGKVid~eLL~r~dL~P~l~~~~~~dslyGl~LdL~~I~~pd~~~~ee---~L~~~l~~~~~~l~~~~~~~~~~e~~l~ 631 (1201)
T PF12128_consen 555 TIGKVIDEELLYRTDLEPQLVEDSGSDSLYGLSLDLSAIDVPDYAASEE---ELRERLEQAEDQLQSAEERQEELEKQLK 631 (1201)
T ss_pred HhHhhCCHHHhcCCCCCCeecCCCcccccceeEeehhhcCCchhhcChH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0122221111 5555566666666666666666666777
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHHHhhhhc
Q 012393 167 EMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKG 212 (464)
Q Consensus 167 dmEnvIedLK~kVskAESRAe~AEskc~lLteTN~ELneEL~~Lks 212 (464)
.....++.++..+..|+....+++.+...|-.--..+..++...+.
T Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 677 (1201)
T PF12128_consen 632 QINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKE 677 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777888888888888888888888777777666666665544443
No 38
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.23 E-value=1.5 Score=46.02 Aligned_cols=85 Identities=21% Similarity=0.336 Sum_probs=48.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhh---hhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHH
Q 012393 128 SEVLTMKEKVKSLEEQLKESEIRLQNA---NACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELS 204 (464)
Q Consensus 128 SE~~sL~eKV~sLEeQLkese~Ql~~a---kas~Ea~~~~isdmEnvIedLK~kVskAESRAe~AEskc~lLteTN~ELn 204 (464)
..+-.|.+.+..|+.+++..+..+... .........++.++++.|...++.+.....+....+++..-|...+.++.
T Consensus 299 ~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~ 378 (562)
T PHA02562 299 DRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNA 378 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchH
Confidence 345556666666666666666665422 22223345566677777777777776665555555555555555555555
Q ss_pred HHHhhhhc
Q 012393 205 EEINFLKG 212 (464)
Q Consensus 205 eEL~~Lks 212 (464)
++|..|..
T Consensus 379 ~~l~~l~~ 386 (562)
T PHA02562 379 EELAKLQD 386 (562)
T ss_pred HHHHHHHH
Confidence 54444433
No 39
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=96.19 E-value=0.0013 Score=72.30 Aligned_cols=182 Identities=23% Similarity=0.281 Sum_probs=0.0
Q ss_pred HHhhhHHHHHHHHHHHHhhhhhhhhH------HHHHHhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHH
Q 012393 164 QLNEMDNFIESLKESLYGAESRAESA------EEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQ 237 (464)
Q Consensus 164 ~isdmEnvIedLK~kVskAESRAe~A------Eskc~lLteTN~ELneEL~~Lks~~s~~~ek~~~LE~qLkese~QLqh 237 (464)
..++.+..|.+|+..+...++.+... -..+.-|..+|.+|..|+..||..- +.++.|+.+.+.+...|+.
T Consensus 224 ~~~e~e~~i~~Le~el~~~~~~~~i~k~l~~ql~~i~~LE~en~~l~~Elk~Lr~~~----~n~elLeEe~~sLq~kl~~ 299 (722)
T PF05557_consen 224 SLAEAEQKIKELEAELKDQESDAEINKELKEQLAHIRELEKENRRLREELKHLRQSQ----ENVELLEEEKRSLQRKLER 299 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhhHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHH
Confidence 34445666666666655555543111 2356788999999999999999962 3477777777777777766
Q ss_pred hHhhhhhh---HHHHHhHHHHHhhHHHHHHH----------HHhhhhhhhhhhhhhhhhhhhhhccchhhhhhhhhhhhH
Q 012393 238 AKVSSEAS---QEQQSMLYSAIWDMETLIED----------LKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDK 304 (464)
Q Consensus 238 A~As~eAs---~eqQ~mL~stikDME~vIeD----------LksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrsk 304 (464)
+...-..- +.+-..|.....++..++.+ +...+...+.+ ++.|.+.+-.+.-++.-++..
T Consensus 300 ~E~~~~el~~lq~e~~~Le~el~sW~sl~~~~~~~~~sPe~l~~~l~~lq~~-------~~~L~ek~g~~~~~~~~l~~~ 372 (722)
T PF05557_consen 300 LEELEEELAELQLENEKLEDELNSWESLLQDIGLEFDSPEDLARALVQLQQE-------NASLTEKLGSLQSELRELEEE 372 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHH-------HHHHHHHHhhhhHHHHHHHHH
Confidence 65221111 11122234444444444443 44444444444 666666666665555555555
Q ss_pred HHHHHHhhHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhh
Q 012393 305 IKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQY 367 (464)
Q Consensus 305 l~~LE~sL~~A~~~K~~TakdI~~~tK~i~dLV~qLa~ERErL~~Qissl~~eNkiL~~k~k~ 367 (464)
+..|+.....+. ..|.--+..+. .+..-+.||+.|..-+++|...|..-++.
T Consensus 373 ~~~Le~e~~~l~-------~~~~~l~~~~~----~~~~~~~RLerq~~L~~kE~d~LR~~L~s 424 (722)
T PF05557_consen 373 IQELEQEKEQLL-------KEIEELEASLE----ALKKLIRRLERQKALATKERDYLRAQLKS 424 (722)
T ss_dssp ---------------------------------------------------------------
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555554443332 22222111111 23444567777777777777777776664
No 40
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=95.94 E-value=4.3 Score=47.51 Aligned_cols=63 Identities=43% Similarity=0.595 Sum_probs=45.8
Q ss_pred HHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHH
Q 012393 163 EQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQ 237 (464)
Q Consensus 163 ~~isdmEnvIedLK~kVskAESRAe~AEskc~lLteTN~ELneEL~~Lks~~s~~~ek~~~LE~qLkese~QLqh 237 (464)
.++..||..|.|||++|.-| --||+=+++|++-|.+|-+.+..|+.- ++-||. +++.+.||++
T Consensus 424 r~~d~aEs~iadlkEQVDAA----lGAE~MV~qLtdknlnlEekVklLeet-------v~dlEa-lee~~EQL~E 486 (1243)
T KOG0971|consen 424 RELDQAESTIADLKEQVDAA----LGAEEMVEQLTDKNLNLEEKVKLLEET-------VGDLEA-LEEMNEQLQE 486 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHh----hcHHHHHHHHHhhccCHHHHHHHHHHH-------HHHHHH-HHHHHHHHHH
Confidence 35667777777777777653 579999999999999999998888875 555552 4444555544
No 41
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.89 E-value=1.1 Score=52.29 Aligned_cols=140 Identities=19% Similarity=0.301 Sum_probs=101.2
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhh------------------HHHHhhhHHHHHHHHHHHHhhhhhhhh
Q 012393 127 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS------------------QEQLNEMDNFIESLKESLYGAESRAES 188 (464)
Q Consensus 127 ~SE~~sL~eKV~sLEeQLkese~Ql~~akas~Ea~------------------~~~isdmEnvIedLK~kVskAESRAe~ 188 (464)
.+|+..+.+-+..+.+-+.+++.|+.......-.+ ..++.|++.-|+..|.++.....+-+.
T Consensus 733 ~~e~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek 812 (1174)
T KOG0933|consen 733 QNEFHKLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEK 812 (1174)
T ss_pred cChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666667777777777766654333222222 226677788888888888888888888
Q ss_pred HHHHHHhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHh
Q 012393 189 AEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKS 268 (464)
Q Consensus 189 AEskc~lLteTN~ELneEL~~Lks~~s~~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~mL~stikDME~vIeDLks 268 (464)
.+-....|.-+=-+|+.++..++++ +..++.++..+..++..+.|.+.+....+.-+...+.|.-..+-+.-+
T Consensus 813 ~~~e~e~l~lE~e~l~~e~~~~k~~-------l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt 885 (1174)
T KOG0933|consen 813 RENEYERLQLEHEELEKEISSLKQQ-------LEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDT 885 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhH
Confidence 8888888999999999999999997 889999999999999999988888776666566666665555555544
Q ss_pred hhhhh
Q 012393 269 KVSKA 273 (464)
Q Consensus 269 Kv~ka 273 (464)
.....
T Consensus 886 ~i~~~ 890 (1174)
T KOG0933|consen 886 EISGL 890 (1174)
T ss_pred HHhhh
Confidence 44333
No 42
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=95.88 E-value=1 Score=50.70 Aligned_cols=60 Identities=18% Similarity=0.144 Sum_probs=35.3
Q ss_pred hhhhhhhhhhHHHHHHHhhHHHHHHHHhhHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHH
Q 012393 294 LKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMME---MVMQLATQRELIQKQVYS 353 (464)
Q Consensus 294 LneELsflrskl~~LE~sL~~A~~~K~~TakdI~~~tK~i~d---LV~qLa~ERErL~~Qiss 353 (464)
|--.|+.++.|-.-||++|++-.-.|..=-.-+|--++-++. .+.+=-.|..-|+..|..
T Consensus 592 L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~ 654 (697)
T PF09726_consen 592 LMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQ 654 (697)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555677788888888888888777777655555544333332 333333444444444433
No 43
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=95.84 E-value=3.4 Score=44.52 Aligned_cols=102 Identities=23% Similarity=0.292 Sum_probs=56.2
Q ss_pred HhhhhhchhhhHH----HHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHH
Q 012393 151 LQNANACFQTSQE----QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILEN 226 (464)
Q Consensus 151 l~~akas~Ea~~~----~isdmEnvIedLK~kVskAESRAe~AEskc~lLteTN~ELneEL~~Lks~~s~~~ek~~~LE~ 226 (464)
..+.++....+.. -+.+=|..|..||.+...-......+-.++. +|..|...+++. ...|+.
T Consensus 230 ~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~-------~l~~E~~~~~ee-------~~~l~~ 295 (511)
T PF09787_consen 230 GESEEAELQQYKQKAQRILQSKEKLIESLKEGCLEEGFDSSTNSIELE-------ELKQERDHLQEE-------IQLLER 295 (511)
T ss_pred hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccccccchhcch-------hhHHHHHHHHHH-------HHHHHH
Confidence 3445555555543 3447888999999844431111111112222 345555555554 666777
Q ss_pred HHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHhh
Q 012393 227 QLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSK 269 (464)
Q Consensus 227 qLkese~QLqhA~As~eAs~eqQ~mL~stikDME~vIeDLksK 269 (464)
||..+..+++++.+......+ .+..-...++..+.-+.++
T Consensus 296 Qi~~l~~e~~d~e~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 335 (511)
T PF09787_consen 296 QIEQLRAELQDLEAQLEGEQE---SFREQPQELSQQLEPELTT 335 (511)
T ss_pred HHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHhch
Confidence 777777777777665544332 4445566666666666555
No 44
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=95.72 E-value=6.4 Score=47.21 Aligned_cols=101 Identities=24% Similarity=0.264 Sum_probs=55.5
Q ss_pred HHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHH---
Q 012393 174 SLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQS--- 250 (464)
Q Consensus 174 dLK~kVskAESRAe~AEskc~lLteTN~ELneEL~~Lks~~s~~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~--- 250 (464)
.++..+..++--+....++|.-|..++.+++..+..+...+....++...|+.....+..-...-.+.+++...++.
T Consensus 543 ~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~ 622 (1317)
T KOG0612|consen 543 SLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEIS 622 (1317)
T ss_pred HHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444555667888888888888888777754445667777776644443333333444555444333
Q ss_pred ----hHHHHHhhHHHHHHHHHhhhhhhh
Q 012393 251 ----MLYSAIWDMETLIEDLKSKVSKAE 274 (464)
Q Consensus 251 ----mL~stikDME~vIeDLksKv~kaE 274 (464)
++...|.+++.-++.++.-..|++
T Consensus 623 e~~~~l~~~i~sL~~~~~~~~~~l~k~~ 650 (1317)
T KOG0612|consen 623 EIIAELKEEISSLEETLKAGKKELLKVE 650 (1317)
T ss_pred HHHHHHHhHHHHHHHHHHhhhhHHHHHH
Confidence 344444444444444444444443
No 45
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=95.72 E-value=0.65 Score=42.48 Aligned_cols=33 Identities=27% Similarity=0.462 Sum_probs=17.7
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHhhhhhchh
Q 012393 127 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQ 159 (464)
Q Consensus 127 ~SE~~sL~eKV~sLEeQLkese~Ql~~akas~E 159 (464)
+-|+.+|+.|+..||.+|-..+.++..++..++
T Consensus 34 E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~le 66 (143)
T PF12718_consen 34 EQEITSLQKKNQQLEEELDKLEEQLKEAKEKLE 66 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666666655555555544444433
No 46
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.71 E-value=2.3 Score=49.96 Aligned_cols=165 Identities=22% Similarity=0.277 Sum_probs=105.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHH--
Q 012393 128 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSE-- 205 (464)
Q Consensus 128 SE~~sL~eKV~sLEeQLkese~Ql~~akas~Ea~~~~isdmEnvIedLK~kVskAESRAe~AEskc~lLteTN~ELne-- 205 (464)
-++.+|.+++.++=.-......-+...+.+...-.+++..|..-|++++.++.+-+++....+.-...+-+.=.++..
T Consensus 294 ~~~~~L~~~~~~~~~~~tr~~t~l~~~~~tl~~e~~k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~~ke~~~~~s~~~ 373 (1174)
T KOG0933|consen 294 GEVKALEDKLDSLQNEITREETSLNLKKETLNGEEEKLEEIRKNIEEDRKKLKEKEKAMAKVEEGYEKLKEAFQEDSKLL 373 (1174)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 344667777776666555555556666666666677888999999999999988888888877766666666555554
Q ss_pred -----HHhhhhcCCCCcchh-hhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHhhhhhhhhhhhh
Q 012393 206 -----EINFLKGNNDSNTKK-VGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTES 279 (464)
Q Consensus 206 -----EL~~Lks~~s~~~ek-~~~LE~qLkese~QLqhA~As~eAs~eqQ~mL~stikDME~vIeDLksKv~kaE~rae~ 279 (464)
.++.|.-. .|.++. -.+|+.||+..-.++ .++.+-|+-.+-|..+.+.....
T Consensus 374 e~~e~~~eslt~G-~Ss~~~~e~~l~~ql~~aK~~~---------------------~~~~t~~k~a~~k~e~~~~elk~ 431 (1174)
T KOG0933|consen 374 EKAEELVESLTAG-LSSNEDEEKTLEDQLRDAKITL---------------------SEASTEIKQAKLKLEHLRKELKL 431 (1174)
T ss_pred HHHHHHHHHHhcc-cccCccchhhHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455443 334444 778888888754443 44444444444444444444444
Q ss_pred hhhhhhhhhccchhhhhhhhhhhhHHHHHHHhhHH
Q 012393 280 VEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNR 314 (464)
Q Consensus 280 ~E~kc~~LsEtN~eLneELsflrskl~~LE~sL~~ 314 (464)
.+.+-...+..+....+++..+.--++.++..|..
T Consensus 432 ~e~e~~t~~~~~~~~~~~ld~~q~eve~l~~~l~~ 466 (1174)
T KOG0933|consen 432 REGELATASAEYVKDIEELDALQNEVEKLKKRLQS 466 (1174)
T ss_pred hhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444555666777777777777777777766654
No 47
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=95.65 E-value=0.003 Score=71.31 Aligned_cols=169 Identities=20% Similarity=0.270 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhhhchhhhHH-HHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHHHhhhhcCCCC
Q 012393 138 KSLEEQLKESEIRLQNANACFQTSQE-QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDS 216 (464)
Q Consensus 138 ~sLEeQLkese~Ql~~akas~Ea~~~-~isdmEnvIedLK~kVskAESRAe~AEskc~lLteTN~ELneEL~~Lks~~s~ 216 (464)
..|++++.....++..++..++.... .+..+|..=..|-.++..++...+.+..+|..|.-+...|..|+.+++..-..
T Consensus 288 ~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~ 367 (859)
T PF01576_consen 288 SELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEK 367 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666555333 35566666667777788888888899999999999999999998888876333
Q ss_pred cchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhhh
Q 012393 217 NTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKN 296 (464)
Q Consensus 217 ~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~mL~stikDME~vIeDLksKv~kaE~rae~~E~kc~~LsEtN~eLne 296 (464)
..-.+..||++.+-+|.++...++-++..+..-.-+..-.+++ .+++.+.....+.+.+++-.|.-.|-.|..
T Consensus 368 ~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~-------~te~~~Lk~~lee~~e~~e~lere~k~L~~ 440 (859)
T PF01576_consen 368 AQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREAREL-------ETELFKLKNELEELQEQLEELERENKQLQD 440 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-------HHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 3445778899889888888888766654432111111112222 222233333333333334444455555555
Q ss_pred hhhhhhhHHHHHHHhhH
Q 012393 297 KQSFMRDKIKILESSLN 313 (464)
Q Consensus 297 ELsflrskl~~LE~sL~ 313 (464)
||.-+.+.+.+-..++|
T Consensus 441 El~dl~~q~~~~~k~v~ 457 (859)
T PF01576_consen 441 ELEDLTSQLDDAGKSVH 457 (859)
T ss_dssp -----------------
T ss_pred hhccchhhhhhhccchH
Confidence 55555444444333333
No 48
>PRK03918 chromosome segregation protein; Provisional
Probab=95.64 E-value=4.8 Score=44.84 Aligned_cols=19 Identities=11% Similarity=0.149 Sum_probs=7.9
Q ss_pred hhhhhhhhhHHHHHHHhhH
Q 012393 295 KNKQSFMRDKIKILESSLN 313 (464)
Q Consensus 295 neELsflrskl~~LE~sL~ 313 (464)
.+++.-++.++..+...+.
T Consensus 458 ~~ei~~l~~~~~~l~~~~~ 476 (880)
T PRK03918 458 TAELKRIEKELKEIEEKER 476 (880)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333
No 49
>PRK04863 mukB cell division protein MukB; Provisional
Probab=95.62 E-value=5.3 Score=48.71 Aligned_cols=226 Identities=18% Similarity=0.222 Sum_probs=100.8
Q ss_pred Hhhhhh-HHhhhccccccchhH-HHHHHHhHHHHHhhhhHHHHHhhhcC-chh-----------------hhhHHHHHHH
Q 012393 80 MLGRFQ-IVQFNLNGSLQRESE-LKSKLGDFIEQLKAKDMVLQKLESTK-NSE-----------------VLTMKEKVKS 139 (464)
Q Consensus 80 l~gkLq-~~Qf~L~as~~REse-LksKLk~s~EQLe~k~~~Lekl~~s~-~SE-----------------~~sL~eKV~s 139 (464)
+-++++ .+.-.|....+-|+. +..=+..-.+.+..-.+.++.+..+. +.. ...-.+....
T Consensus 205 iy~~i~~~i~~fl~~yll~e~~~v~~~i~~m~~~l~~~r~t~~~~~~tq~drdlFk~lI~~~~~~~aad~~r~~eERR~l 284 (1486)
T PRK04863 205 LYGGISSAITRSLRDYLLPENSGVRKAFQDMEAALRENRMTLEAIRVTQSDRDLFKHLITESTNYVAADYMRHANERRVH 284 (1486)
T ss_pred HHhhHHHhHHHHHHHHcCCCChhhhHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHhhhhhhhhHHHHhhCHHHHHHH
Confidence 444443 455567777888887 76556666677777777777776661 000 0111122222
Q ss_pred HHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhh------hhHHHHHHHhhhhcC
Q 012393 140 LEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTD------TNLELSEEINFLKGN 213 (464)
Q Consensus 140 LEeQLkese~Ql~~akas~Ea~~~~isdmEnvIedLK~kVskAESRAe~AEskc~lLte------TN~ELneEL~~Lks~ 213 (464)
+|+=+ .+..+...+....+..+..+..+..++.+|+.++.+-+..++.|..-..+-.+ .=..+...+..|...
T Consensus 285 iEEAa-g~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~ 363 (1486)
T PRK04863 285 LEEAL-ELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEER 363 (1486)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22221 12222333333333333344444444444444444444444444333222221 111111222222221
Q ss_pred CCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHhhhhhh---hhhhhhhhhhhh--hhh
Q 012393 214 NDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKA---ESKTESVEEQCI--VLS 288 (464)
Q Consensus 214 ~s~~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~mL~stikDME~vIeDLksKv~ka---E~rae~~E~kc~--~Ls 288 (464)
+...+..+.+...++....+..+....+..-+...+.+...-+..++.++... -.+.+.|+.-|. .||
T Consensus 364 -------Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~S 436 (1486)
T PRK04863 364 -------LEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLT 436 (1486)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 22222233332222222222222222333334444445555555555544332 234468888896 899
Q ss_pred ccchhhhhhhhhhhhHHHHHHHhhHHH
Q 012393 289 EDNFELKNKQSFMRDKIKILESSLNRA 315 (464)
Q Consensus 289 EtN~eLneELsflrskl~~LE~sL~~A 315 (464)
+.|++ ..+..+..++..++..+...
T Consensus 437 dEeLe--~~LenF~aklee~e~qL~el 461 (1486)
T PRK04863 437 ADNAE--DWLEEFQAKEQEATEELLSL 461 (1486)
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 98865 45555555555444444433
No 50
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=95.61 E-value=2.8 Score=46.36 Aligned_cols=267 Identities=15% Similarity=0.169 Sum_probs=152.1
Q ss_pred HHHhHHHHhhhHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHhhcchHHHHhhhhHHHhhhhhHHhhhccccccchhHHHH
Q 012393 24 LEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKS 103 (464)
Q Consensus 24 LEkkL~es~~~eeeLk~kL~~~eqE~~~lEEaa~~~~eR~~EAENasEvL~G~Skel~gkLq~~Qf~L~as~~REseLks 103 (464)
.|.-|..++....+-.-..+-++.+...+.+..+++-.||.+++.....-+.......++|..++..++=.-.|=..+.+
T Consensus 90 ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~ 169 (546)
T KOG0977|consen 90 YEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALED 169 (546)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Confidence 35566777888888888889999999999999999999999999999999999999999999998887765555444444
Q ss_pred HHHhHHHHHhhhhHHHHHhhhcC----------chhhhhHHHHHHHHH----HHHHHHHHHHhhhh--hchhhhHHHHh-
Q 012393 104 KLGDFIEQLKAKDMVLQKLESTK----------NSEVLTMKEKVKSLE----EQLKESEIRLQNAN--ACFQTSQEQLN- 166 (464)
Q Consensus 104 KLk~s~EQLe~k~~~Lekl~~s~----------~SE~~sL~eKV~sLE----eQLkese~Ql~~ak--as~Ea~~~~is- 166 (464)
.++..-.+...--..|..++.-. ...+++|.+.+.-+. ..+++.....+-.- ...+.+..++.
T Consensus 170 e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~ 249 (546)
T KOG0977|consen 170 ELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELAL 249 (546)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHH
Confidence 44433333333334444444332 234455555444432 33333322221111 11122222111
Q ss_pred -------hh-------HHHHHH-HHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhH
Q 012393 167 -------EM-------DNFIES-LKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDL 231 (464)
Q Consensus 167 -------dm-------EnvIed-LK~kVskAESRAe~AEskc~lLteTN~ELneEL~~Lks~~s~~~ek~~~LE~qLkes 231 (464)
+. ..-|+. .+.+|.++...+..+-.-.-..-|-=......++.|+++.+---.+-..|++++.++
T Consensus 250 Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL 329 (546)
T KOG0977|consen 250 AIREIRAQYEAISRQNRKDIESWYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDL 329 (546)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHH
Confidence 11 111111 345666665544433222222222112222223333333211112245677777777
Q ss_pred HHHHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhhhhhhhhhhHHHH
Q 012393 232 EIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKI 307 (464)
Q Consensus 232 e~QLqhA~As~eAs~eqQ~mL~stikDME~vIeDLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrskl~~ 307 (464)
+.||.. .|.+...++-|-+.-|..+...+...-.+ .-.|=+++.-|.-||+-||.=|+.
T Consensus 330 ~~ql~e----------~~r~~e~~L~~kd~~i~~mReec~~l~~E-------lq~LlD~ki~Ld~EI~~YRkLLeg 388 (546)
T KOG0977|consen 330 EYQLDE----------DQRSFEQALNDKDAEIAKMREECQQLSVE-------LQKLLDTKISLDAEIAAYRKLLEG 388 (546)
T ss_pred Hhhhhh----------hhhhhhhhhhhHHHHHHHHHHHHHHHHHH-------HHHhhchHhHHHhHHHHHHHHhcc
Confidence 766643 34445556666666666666666555444 556778899999999999976543
No 51
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=95.58 E-value=5.5 Score=47.80 Aligned_cols=81 Identities=25% Similarity=0.207 Sum_probs=46.8
Q ss_pred HHHHHHhhhhhhHHHhHHHHhhhHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHhhc-chHHHHhhhhHHHhhhhhHHhhh
Q 012393 12 RMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAE-NSAEVLMGISKEMLGRFQIVQFN 90 (464)
Q Consensus 12 rmLEkSlA~e~dLEkkL~es~~~eeeLk~kL~~~eqE~~~lEEaa~~~~eR~~EAE-NasEvL~G~Skel~gkLq~~Qf~ 90 (464)
|-||++=|.---.++...+.+.+.++++.=|..-.-.-.-.|+.|+.|-+.++-++ -.++-|.|.-++-+.+|..+..=
T Consensus 1454 ~~~~~a~as~~q~~~s~~el~~Li~~v~~Flt~~~adp~si~~vA~~vL~l~lp~tpeqi~~L~~~I~e~v~sL~nVd~I 1533 (1758)
T KOG0994|consen 1454 RALEQANASRSQMEESNRELRNLIQQVRDFLTQPDADPDSIEEVAEEVLALELPLTPEQIQQLTGEIQERVASLPNVDAI 1533 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcccHHHH
Confidence 34444444444445555555555555554444433344455677777777666554 34677788888877777766654
Q ss_pred cc
Q 012393 91 LN 92 (464)
Q Consensus 91 L~ 92 (464)
|+
T Consensus 1534 L~ 1535 (1758)
T KOG0994|consen 1534 LS 1535 (1758)
T ss_pred HH
Confidence 43
No 52
>PRK03918 chromosome segregation protein; Provisional
Probab=95.44 E-value=5.6 Score=44.32 Aligned_cols=49 Identities=20% Similarity=0.236 Sum_probs=26.4
Q ss_pred HHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhh-hhHHHHHHHhhhhc
Q 012393 164 QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTD-TNLELSEEINFLKG 212 (464)
Q Consensus 164 ~isdmEnvIedLK~kVskAESRAe~AEskc~lLte-TN~ELneEL~~Lks 212 (464)
++.++++-+.+++.++.....+.+.-+.+..-|.. .-.++..++..|+.
T Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~l~~ 599 (880)
T PRK03918 550 KLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEP 599 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHhhh
Confidence 33445555556666666666666666665555542 22345555555554
No 53
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.42 E-value=5.7 Score=44.24 Aligned_cols=308 Identities=17% Similarity=0.168 Sum_probs=168.6
Q ss_pred HhhhHHHHHhhhhhhHH----HHHhHHHHHHHHHHHHHhhcchHHHHhhhhHHHhhhhhHHhhhccccccchhHHHHHHH
Q 012393 31 LNQNEEQLKLKLHHTEQ----VAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLG 106 (464)
Q Consensus 31 s~~~eeeLk~kL~~~eq----E~~~lEEaa~~~~eR~~EAENasEvL~G~Skel~gkLq~~Qf~L~as~~REseLksKLk 106 (464)
....+.||+.+|...-+ +...|+.....+.+.+- ..+-.-|--..+..+-..+|.|.+-..--.+.+++|=.
T Consensus 215 ~~~~~~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~----e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~ 290 (581)
T KOG0995|consen 215 SSELEDELKHRLEKYFTSIANEIEDLKKTNRELEEMIN----EREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQ 290 (581)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhH
Confidence 44567777777765444 23334444444444443 44444455555555566666665533333333333332
Q ss_pred hHHHHHhhhhHHHHHhhhcCchhhhhHHHHHHHHHHHHHHH---HHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhh-
Q 012393 107 DFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKES---EIRLQNANACFQTSQEQLNEMDNFIESLKESLYGA- 182 (464)
Q Consensus 107 ~s~EQLe~k~~~Lekl~~s~~SE~~sL~eKV~sLEeQLkes---e~Ql~~akas~Ea~~~~isdmEnvIedLK~kVskA- 182 (464)
.-...|+....+++. +.+|+.+|+.++..|-+|+.-- ..+........++....+..+..-++.|-.+|-+-
T Consensus 291 ~~~~~l~~l~~Eie~----kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~ 366 (581)
T KOG0995|consen 291 HMEKKLEMLKSEIEE----KEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELK 366 (581)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 222222222222222 4688888888888887777542 22233333444444556666666666665555443
Q ss_pred ---hhhhhhHHHHHHhhhhhhHHHHHH-Hhhhhc--------C--CCCcchhhh-hhHHHHhhHHHHHHHhHhhhhhhHH
Q 012393 183 ---ESRAESAEEKVTQLTDTNLELSEE-INFLKG--------N--NDSNTKKVG-ILENQLRDLEIQLQQAKVSSEASQE 247 (464)
Q Consensus 183 ---ESRAe~AEskc~lLteTN~ELneE-L~~Lks--------~--~s~~~ek~~-~LE~qLkese~QLqhA~As~eAs~e 247 (464)
+.+...-+.+...+-..=..|.-- +.+.++ . +..-...|. .|..-+.+...++..|+ .
T Consensus 367 l~~~~~f~~le~~~~~~~~l~~~i~l~~~~~~~n~~~~pe~~~~~~~d~k~~V~~~l~el~~ei~~~~~~~~-------~ 439 (581)
T KOG0995|consen 367 LEIEDFFKELEKKFIDLNSLIRRIKLGIAENSKNLERNPERAATNGVDLKSYVKPLLKELLDEISEELHEAE-------N 439 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccCccccccchhHhHHHHHHHHHHHHHHHHHHH-------H
Confidence 444444444444333322222222 222333 1 000011111 12222222222222221 1
Q ss_pred HHHhHHHHHhhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHhhHHHHH
Q 012393 248 QQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVN 327 (464)
Q Consensus 248 qQ~mL~stikDME~vIeDLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrskl~~LE~sL~~A~~~K~~TakdI~ 327 (464)
+-.-|-..++.|.+.|++++.-+...+.++-.++++|-..-+++-++ ..--|.-++.||..|+..+..=...-++.+
T Consensus 440 ~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee---~~k~~~E~e~le~~l~~l~l~~~~~m~~a~ 516 (581)
T KOG0995|consen 440 ELETLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKEEAEEE---WKKCRKEIEKLEEELLNLKLVLNTSMKEAE 516 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12234568899999999999999999999999999999988887665 455677888888888887766555555555
Q ss_pred HHhHHHH----HHHHHHHHHHHHHHHHHHHhhh
Q 012393 328 HRTKLMM----EMVMQLATQRELIQKQVYSLTS 356 (464)
Q Consensus 328 ~~tK~i~----dLV~qLa~ERErL~~Qissl~~ 356 (464)
-.-+.+. .+|.-...||+.+++|+.-+.+
T Consensus 517 ~~v~s~e~el~~~~~~~~eer~ki~~ql~~~i~ 549 (581)
T KOG0995|consen 517 ELVKSIELELDRMVATGEEERQKIAKQLFAVID 549 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444433 4566677889999999776643
No 54
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=95.30 E-value=2.2 Score=50.16 Aligned_cols=154 Identities=18% Similarity=0.274 Sum_probs=100.7
Q ss_pred HHHHHHHHHhhcchHHHHhhhhHHHhhhhhHHhhhccccccchhHHHHHHHhHHHHHh-------hhhHHHHHhhhcCch
Q 012393 56 AEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLK-------AKDMVLQKLESTKNS 128 (464)
Q Consensus 56 a~~~~eR~~EAENasEvL~G~Skel~gkLq~~Qf~L~as~~REseLksKLk~s~EQLe-------~k~~~Lekl~~s~~S 128 (464)
++-+|-..++-++...-+...-+-.+.|+-+.|-.+.-.-.+=.+++.|+.+-+.++. +++.+++.+..+
T Consensus 269 ~k~~W~~V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~--- 345 (1074)
T KOG0250|consen 269 AKMAWAWVNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKD--- 345 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHH---
Confidence 4567888888877776665555555555555555544444444444444444444443 344444444443
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHH-HHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHHH
Q 012393 129 EVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFI-ESLKESLYGAESRAESAEEKVTQLTDTNLELSEEI 207 (464)
Q Consensus 129 E~~sL~eKV~sLEeQLkese~Ql~~akas~Ea~~~~isdmEnvI-edLK~kVskAESRAe~AEskc~lLteTN~ELneEL 207 (464)
+..+.-.+..++.+.++++......+...+.+..+|++.+.-. .++.....+.|.+-.+-..++.-|.+-+..|.+|+
T Consensus 346 -~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~ 424 (1074)
T KOG0250|consen 346 -LDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREEL 424 (1074)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556667788888888888888888887777777776544 77777777777777777777777777777777777
Q ss_pred hhhhcC
Q 012393 208 NFLKGN 213 (464)
Q Consensus 208 ~~Lks~ 213 (464)
+.++..
T Consensus 425 ~~~~~~ 430 (1074)
T KOG0250|consen 425 NEVKEK 430 (1074)
T ss_pred HHHHHH
Confidence 777765
No 55
>PRK01156 chromosome segregation protein; Provisional
Probab=95.23 E-value=7 Score=44.15 Aligned_cols=18 Identities=0% Similarity=-0.034 Sum_probs=9.5
Q ss_pred ecCCCCchHHHHHHHHHH
Q 012393 425 YTRGLAYPEFVKKVIAMM 442 (464)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~ 442 (464)
+|..---|+.+..+..+|
T Consensus 833 Ept~~lD~~~~~~l~~~l 850 (895)
T PRK01156 833 EPTAFLDEDRRTNLKDII 850 (895)
T ss_pred CCCCcCCHHHHHHHHHHH
Confidence 344444466666655544
No 56
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=95.22 E-value=0.52 Score=43.55 Aligned_cols=95 Identities=20% Similarity=0.193 Sum_probs=69.7
Q ss_pred HHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHhhhhhhhhhhhhhhhhhh
Q 012393 206 EINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCI 285 (464)
Q Consensus 206 EL~~Lks~~s~~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~mL~stikDME~vIeDLksKv~kaE~rae~~E~kc~ 285 (464)
+|..-++.+++--+++.+||+.|..++..++++..-++.++. +|+.|+.+++..-+.....+..-.
T Consensus 11 kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~--------------eie~L~~el~~lt~el~~L~~EL~ 76 (140)
T PF10473_consen 11 KLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKA--------------EIETLEEELEELTSELNQLELELD 76 (140)
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444443334567999999999988888888877777765 455555666555555556666688
Q ss_pred hhhccchhhhhhhhhhhhHHHHHHHhhHH
Q 012393 286 VLSEDNFELKNKQSFMRDKIKILESSLNR 314 (464)
Q Consensus 286 ~LsEtN~eLneELsflrskl~~LE~sL~~ 314 (464)
.|+..+-.|.+++--..+|+..||....-
T Consensus 77 ~l~sEk~~L~k~lq~~q~kv~eLE~~~~~ 105 (140)
T PF10473_consen 77 TLRSEKENLDKELQKKQEKVSELESLNSS 105 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 89999999999999999999999877654
No 57
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=95.16 E-value=5.1 Score=44.38 Aligned_cols=132 Identities=25% Similarity=0.333 Sum_probs=58.3
Q ss_pred HHHHhhcchHHHHhhhhHHHhhhhhHHhhhccccccch-hHHHHHHHhHHHHHhhhhHHHHHhhhcCchhhhhHHHHHHH
Q 012393 61 GRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRE-SELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKS 139 (464)
Q Consensus 61 eR~~EAENasEvL~G~Skel~gkLq~~Qf~L~as~~RE-seLksKLk~s~EQLe~k~~~Lekl~~s~~SE~~sL~eKV~s 139 (464)
-|||||+|-. |.-+.+.+.+ ...++ +.++.+-+..+-.+- .-+.+. ..+--.+.-.+.-
T Consensus 58 VR~LEaqN~~--L~~di~~lr~-----------~~~~~ts~ik~~ye~El~~ar------~~l~e~-~~~ra~~e~ei~k 117 (546)
T KOG0977|consen 58 VRFLEAQNRK--LEHDINLLRG-----------VVGRETSGIKAKYEAELATAR------KLLDET-ARERAKLEIEITK 117 (546)
T ss_pred HHHHHHHHHH--HHHHHHHHHh-----------hccCCCcchhHHhhhhHHHHH------HHHHHH-HHHHHHHHHHHHH
Confidence 4899999963 3333333333 33444 455555443332211 111111 2233344444444
Q ss_pred HHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHHHhhhhc
Q 012393 140 LEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKG 212 (464)
Q Consensus 140 LEeQLkese~Ql~~akas~Ea~~~~isdmEnvIedLK~kVskAESRAe~AEskc~lLteTN~ELneEL~~Lks 212 (464)
|..+++++.-++..+.-......+++.+..+.+.++..++.-+-.|-..-+.+..-|-.-|..|-.+|...|.
T Consensus 118 l~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~ 190 (546)
T KOG0977|consen 118 LREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARK 190 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 5555555554444443333333344444444444444444444444444444444444444444444444443
No 58
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=95.12 E-value=3.3 Score=40.43 Aligned_cols=120 Identities=22% Similarity=0.224 Sum_probs=74.7
Q ss_pred HHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhh
Q 012393 164 QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSE 243 (464)
Q Consensus 164 ~isdmEnvIedLK~kVskAESRAe~AEskc~lLteTN~ELneEL~~Lks~~s~~~ek~~~LE~qLkese~QLqhA~As~e 243 (464)
.+.|++.-+..|.+...+-.- ...-..++|..|.+++..||.+ ++- +|||.--+.
T Consensus 9 ~v~dL~~~n~~L~~en~kL~~-------~ve~~ee~na~L~~e~~~L~~q--------------~~s----~Qqal~~aK 63 (193)
T PF14662_consen 9 CVEDLQLNNQKLADENAKLQR-------SVETAEEGNAQLAEEITDLRKQ--------------LKS----LQQALQKAK 63 (193)
T ss_pred HHHHHHHHhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH--------------HHH----HHHHHHHHH
Confidence 344444444444444433322 2334557788888888877774 332 245555555
Q ss_pred hhHHHHHhHHHHHhhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhhhhhhhhhhHHHHH
Q 012393 244 ASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKIL 308 (464)
Q Consensus 244 As~eqQ~mL~stikDME~vIeDLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrskl~~L 308 (464)
|-.+.-.-|.+.++-+|-.=.-|-......|++.-+...+...|-+.|-+|.-|..-+..|...|
T Consensus 64 ~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL 128 (193)
T PF14662_consen 64 ALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKEL 128 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHH
Confidence 55554444566666666666666666666777777777777888888888888777777776666
No 59
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=94.94 E-value=8.7 Score=43.74 Aligned_cols=198 Identities=24% Similarity=0.255 Sum_probs=100.1
Q ss_pred hcchHHHHhhhhHHHhhhhhHHhhhccccccchhHHHHHHHhHHHHHhhhhHHHHHhhhcC------------chhhhhH
Q 012393 66 AENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTK------------NSEVLTM 133 (464)
Q Consensus 66 AENasEvL~G~Skel~gkLq~~Qf~L~as~~REseLksKLk~s~EQLe~k~~~Lekl~~s~------------~SE~~sL 133 (464)
+.=..+.+.|-+++..++++ .|...-.+.+.++-..+.+.+-+. -.++-.+
T Consensus 376 ~~~~le~~k~~~ke~~~~~~-----------------~ka~~E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~ 438 (698)
T KOG0978|consen 376 NELRLEMLKSLLKEQRDKLQ-----------------VKARAETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEEL 438 (698)
T ss_pred HHHHHHHHhCCCHHHHhHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHH
Confidence 44455677777888777776 445555555555555555444430 1233333
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhh-------hhHHHHHHhhhhhhHHHHHH
Q 012393 134 KEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRA-------ESAEEKVTQLTDTNLELSEE 206 (464)
Q Consensus 134 ~eKV~sLEeQLkese~Ql~~akas~Ea~~~~isdmEnvIedLK~kVskAESRA-------e~AEskc~lLteTN~ELneE 206 (464)
.+-++.+++-.+.+-...+.+.+ -..+|+..|-.|=..+-+++-+. .++-.+...|.+.=..|++.
T Consensus 439 ~e~Lqk~~~~~k~ll~e~~t~gs-------A~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~ 511 (698)
T KOG0978|consen 439 SEELQKKEKNFKCLLSEMETIGS-------AFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQ 511 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333322222222222 33456666666655555555443 34444445555555555555
Q ss_pred HhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHhhhhhhhhhhhhhhhhhhh
Q 012393 207 INFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIV 286 (464)
Q Consensus 207 L~~Lks~~s~~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~mL~stikDME~vIeDLksKv~kaE~rae~~E~kc~~ 286 (464)
+.-|+.+...-..++.-||.+++-+-.+...-.+.....+-.-.|...++-|...-.++||.++.+.++..+....+|.-
T Consensus 512 i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e 591 (698)
T KOG0978|consen 512 ILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAE 591 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555542222334444555554432222222222222221122344477777788888888888888887777777754
Q ss_pred h
Q 012393 287 L 287 (464)
Q Consensus 287 L 287 (464)
+
T Consensus 592 ~ 592 (698)
T KOG0978|consen 592 L 592 (698)
T ss_pred H
Confidence 3
No 60
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=94.76 E-value=8.2 Score=42.57 Aligned_cols=300 Identities=19% Similarity=0.245 Sum_probs=184.9
Q ss_pred hhHHHHHhhhhhhHH----HHHhHHHHHHHHHHHHHhhcchHHHHhhhhHHHhhhhhHHhhhccccccchhHHHHHHHhH
Q 012393 33 QNEEQLKLKLHHTEQ----VAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDF 108 (464)
Q Consensus 33 ~~eeeLk~kL~~~eq----E~~~lEEaa~~~~eR~~EAENasEvL~G~Skel~gkLq~~Qf~L~as~~REseLksKLk~s 108 (464)
..++||+...+..-+ +...+-+.-..+++++-||+..++-. +.+..|--.++.|++-..--++-+++|-..-
T Consensus 253 ~~e~Elk~~f~~~~~~i~~~i~~lk~~n~~l~e~i~ea~k~s~~i----~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~ 328 (622)
T COG5185 253 PSEQELKLGFEKFVHIINTDIANLKTQNDNLYEKIQEAMKISQKI----KTLREKWRALKSDSNKYENYVNAMKQKSQEW 328 (622)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhHHHHHHHHHHHHHHHHhc
Confidence 356777776655444 33445556667777888887766543 5677777777777775555555555555443
Q ss_pred HHHHhhhhHHHHHhhhcCchhhhhHHHHHHHHHHHHHHHHHHHh---hhhhchhhhHHHHhhh----HHHHHHHHHHHHh
Q 012393 109 IEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQ---NANACFQTSQEQLNEM----DNFIESLKESLYG 181 (464)
Q Consensus 109 ~EQLe~k~~~Lekl~~s~~SE~~sL~eKV~sLEeQLkese~Ql~---~akas~Ea~~~~isdm----EnvIedLK~kVsk 181 (464)
.-.++.-..+.++ +.+|.+.|+.+...|-.|++.-++-.. ...+.-+..--++.-| +.+-...++.-..
T Consensus 329 ~g~l~kl~~eie~----kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~le 404 (622)
T COG5185 329 PGKLEKLKSEIEL----KEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLE 404 (622)
T ss_pred chHHHHHHHHHHH----HHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHH
Confidence 3222222222222 468889999999999988886544322 2222222222233333 3334445556667
Q ss_pred hhhhhhhHHHHHHhhhhhhHHH------------------HHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhh
Q 012393 182 AESRAESAEEKVTQLTDTNLEL------------------SEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSE 243 (464)
Q Consensus 182 AESRAe~AEskc~lLteTN~EL------------------neEL~~Lks~~s~~~ek~~~LE~qLkese~QLqhA~As~e 243 (464)
|+.++++-|.+.-.+-.-=..+ |-|-.|-++.| .++++--++..|+.. +|+
T Consensus 405 aq~~~~slek~~~~~~sl~~~i~~~~~~i~~~~nd~~l~iN~E~~~~~~sg--~~~~I~~~i~eln~~-i~~-------- 473 (622)
T COG5185 405 AQGIFKSLEKTLRQYDSLIQNITRSRSQIGHNVNDSSLKINIEQLFPKGSG--INESIKKSILELNDE-IQE-------- 473 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccHHHHhhcCCCCceeeccccCCccccC--chHhHHHHHHHHhHH-HHH--------
Confidence 8888887777665553321111 11222223332 245555555555542 221
Q ss_pred hhHHHHH--h-HHHHHhhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhhhhhhhhhhHHHHHHHhhHHHHHH--
Q 012393 244 ASQEQQS--M-LYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIE-- 318 (464)
Q Consensus 244 As~eqQ~--m-L~stikDME~vIeDLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrskl~~LE~sL~~A~~~-- 318 (464)
-..+.|+ . |...++..++.|-+|..-+.+.|.+.-.|-++|-++-|+|-. |+-..+-.++-||+.|...+..
T Consensus 474 ~~~~e~nksi~Lee~i~~~~~~i~El~~~l~~~e~~L~~a~s~~~~~ke~~e~---e~~a~~~E~eklE~el~~lnL~s~ 550 (622)
T COG5185 474 RIKTEENKSITLEEDIKNLKHDINELTQILEKLELELSEANSKFELSKEENER---ELVAQRIEIEKLEKELNDLNLLSK 550 (622)
T ss_pred HHHHHhccceeHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHhhhhcc
Confidence 1122332 3 566889999999999999999999999999999999998864 5667788888899998887754
Q ss_pred -HHhhHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHh
Q 012393 319 -KAASAKEVNHRTKL-MMEMVMQLATQRELIQKQVYSL 354 (464)
Q Consensus 319 -K~~TakdI~~~tK~-i~dLV~qLa~ERErL~~Qissl 354 (464)
++--+.+.-.++.+ ...+.-.+..+|..+|+||--+
T Consensus 551 ts~l~~eq~vqs~~i~ld~~~~~~n~~r~~i~k~V~~v 588 (622)
T COG5185 551 TSILDAEQLVQSTEIKLDELKVDLNRKRYKIHKQVIHV 588 (622)
T ss_pred chHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445554444433 4556677889999999998655
No 61
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.54 E-value=14 Score=44.09 Aligned_cols=219 Identities=22% Similarity=0.271 Sum_probs=129.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHHH
Q 012393 128 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEI 207 (464)
Q Consensus 128 SE~~sL~eKV~sLEeQLkese~Ql~~akas~Ea~~~~isdmEnvIedLK~kVskAESRAe~AEskc~lLteTN~ELneEL 207 (464)
.|+.+-.-|+..||.+++-+..++.+.+-+++..+.++.-+++.|..+.-+++.-+-+.++.|....-|.+-=.++-..+
T Consensus 676 ~e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~i 755 (1141)
T KOG0018|consen 676 KEVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEISEIKRKLQNREGEMKELEERMNKVEDRI 755 (1141)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 38999999999999999999999999998888888888888888888888888777777777766655544333333321
Q ss_pred --hhhhcCCCC------------cchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHhhhhhh
Q 012393 208 --NFLKGNNDS------------NTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKA 273 (464)
Q Consensus 208 --~~Lks~~s~------------~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~mL~stikDME~vIeDLksKv~ka 273 (464)
+|-+.-|.. ..+|.-.+|+|+-.++.||+--+- .++ +..=.+....+.|.+.-|++++....-+
T Consensus 756 f~~f~~~igv~ir~Yee~~~~~~~a~k~~ef~~q~~~l~~~l~fe~~-~d~-~~~ve~~~~~v~~~~~~~~~~~~~e~~~ 833 (1141)
T KOG0018|consen 756 FKGFCRRIGVRIREYEERELQQEFAKKRLEFENQKAKLENQLDFEKQ-KDT-QRRVERWERSVEDLEKEIEGLKKDEEAA 833 (1141)
T ss_pred HHHhhhhcCeeeehHHHHHHHHHHHHHHHHHHHHHHHHhhhhhheec-ccH-HHHHHHHHHHHHHHHHhHHhhHHHHHHH
Confidence 222222221 134455555555555555544333 111 1112255566777777777777654433
Q ss_pred hhhhhhhhhhhhhhhccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHhhHHHHHHHhHHHHHHH---HHHHHHHHHHHHH
Q 012393 274 ESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMV---MQLATQRELIQKQ 350 (464)
Q Consensus 274 E~rae~~E~kc~~LsEtN~eLneELsflrskl~~LE~sL~~A~~~K~~TakdI~~~tK~i~dLV---~qLa~ERErL~~Q 350 (464)
++. +.+. .++-+ +. .+..+.+.. ++.-.+|...+|| +.|..++-.+.++
T Consensus 834 ~k~----------i~e~-~~~e~-----k~---------k~~~~~~~~---e~~e~~k~~~~~~~~~tkl~~~i~~~es~ 885 (1141)
T KOG0018|consen 834 EKI----------IAEI-EELEK-----KN---------KSKFEKKED---EINEVKKILRRLVKELTKLDKEITSIESK 885 (1141)
T ss_pred HHH----------HhhH-HHHHH-----HH---------HHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhhhhhhhH
Confidence 322 2222 22211 11 111111111 2333334444444 3344555556666
Q ss_pred HHHhhhhhhHHHHHHhhcCCCCCcee
Q 012393 351 VYSLTSENKLLVEKLQYSGKSSSATM 376 (464)
Q Consensus 351 issl~~eNkiL~~k~k~~~~~~~~~~ 376 (464)
|--+-.+-.-|-.+||-..|..|+..
T Consensus 886 ie~~~~er~~lL~~ckl~~I~vPl~~ 911 (1141)
T KOG0018|consen 886 IERKESERHNLLSKCKLEDIEVPLSS 911 (1141)
T ss_pred HHHHHHHHHHHHHHhhhccccccccC
Confidence 66666666667788998899999874
No 62
>PRK11637 AmiB activator; Provisional
Probab=94.44 E-value=7.4 Score=40.62 Aligned_cols=85 Identities=22% Similarity=0.342 Sum_probs=48.7
Q ss_pred hHHHHHHHhHHHHHhhhhHHHHHhhhcCchhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHH
Q 012393 99 SELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKES 178 (464)
Q Consensus 99 seLksKLk~s~EQLe~k~~~Lekl~~s~~SE~~sL~eKV~sLEeQLkese~Ql~~akas~Ea~~~~isdmEnvIedLK~k 178 (464)
+++..+|++...++......+. .+..++..++.++...+.++..+.......+.+|+.++.-|..+...
T Consensus 43 ~~~~~~l~~l~~qi~~~~~~i~-----------~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~e 111 (428)
T PRK11637 43 SDNRDQLKSIQQDIAAKEKSVR-----------QQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNAS 111 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777766665554444 34445555555555555555555555555555555666666666666
Q ss_pred HHhhhhhhhhHHHHHH
Q 012393 179 LYGAESRAESAEEKVT 194 (464)
Q Consensus 179 VskAESRAe~AEskc~ 194 (464)
|..++.+.........
T Consensus 112 I~~~q~~l~~~~~~l~ 127 (428)
T PRK11637 112 IAKLEQQQAAQERLLA 127 (428)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666655555544443
No 63
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=94.31 E-value=7.7 Score=40.27 Aligned_cols=221 Identities=22% Similarity=0.342 Sum_probs=141.6
Q ss_pred HHHHhhhhhhHHHHHhHHHHHHHHHHHHHhhcchHHHHhhhhHHHhhhhhHHhhhccccccchhH----HHHHHHhHHHH
Q 012393 36 EQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESE----LKSKLGDFIEQ 111 (464)
Q Consensus 36 eeLk~kL~~~eqE~~~lEEaa~~~~eR~~EAENasEvL~G~Skel~gkLq~~Qf~L~as~~REse----LksKLk~s~EQ 111 (464)
--|+-+|-.-.|-+..||-.++++..|+..|=+=. ++=++..-||.-+.+|+.| |.+|+..-.-+
T Consensus 73 t~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~-----------dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S~ 141 (305)
T PF14915_consen 73 TMLNSKLEKEKQNKERLETEIESYRSRLAAAIQDH-----------DQSQTSKRDLELAFQRARDEWVRLQDKMNSDVSN 141 (305)
T ss_pred HHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhH-----------HHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHh
Confidence 34566776777788899999999999998875432 3456777788888888888 66666555544
Q ss_pred Hhhhh-HHHHHhhhcCchhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHH
Q 012393 112 LKAKD-MVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAE 190 (464)
Q Consensus 112 Le~k~-~~Lekl~~s~~SE~~sL~eKV~sLEeQLkese~Ql~~akas~Ea~~~~isdmEnvIedLK~kVskAESRAe~AE 190 (464)
|.... .--++|... .+-+-+|..++.-.=..|++--+-+.++.......+.++.+||++.-.=..+|.+.-.+-++.+
T Consensus 142 lkd~ne~LsQqLska-esK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~e 220 (305)
T PF14915_consen 142 LKDNNEILSQQLSKA-ESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLE 220 (305)
T ss_pred HHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 44322 222333322 3333344444444444444444444455444455666899999999999999999999999999
Q ss_pred HHHHhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHhhh
Q 012393 191 EKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKV 270 (464)
Q Consensus 191 skc~lLteTN~ELneEL~~Lks~~s~~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~mL~stikDME~vIeDLksKv 270 (464)
.+..+|---|+=|...|......|. .-| -++-|+..=+.|...|+
T Consensus 221 ERL~QlqsEN~LLrQQLddA~~K~~-------~ke----------------------------k~ViniQ~~f~d~~~~L 265 (305)
T PF14915_consen 221 ERLSQLQSENMLLRQQLDDAHNKAD-------NKE----------------------------KTVINIQDQFQDIVKKL 265 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHH----------------------------HHHhhHHHHHHHHHHHH
Confidence 9988888888877777766666532 111 13444443333444443
Q ss_pred hhhhhhhhhhhhhhhhhhccchhhhhhhhhhhhHHHHHH
Q 012393 271 SKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILE 309 (464)
Q Consensus 271 ~kaE~rae~~E~kc~~LsEtN~eLneELsflrskl~~LE 309 (464)
. ++ .+.++.+|-|.|-+|-.|-+.|+-|+--.|
T Consensus 266 ~-ae-----~ekq~lllEErNKeL~ne~n~LkEr~~qyE 298 (305)
T PF14915_consen 266 Q-AE-----SEKQVLLLEERNKELINECNHLKERLYQYE 298 (305)
T ss_pred H-HH-----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 2 22 235578888999999888888777755444
No 64
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=94.28 E-value=6.5 Score=44.52 Aligned_cols=209 Identities=19% Similarity=0.217 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHH-------HHHHHhhh
Q 012393 138 KSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLE-------LSEEINFL 210 (464)
Q Consensus 138 ~sLEeQLkese~Ql~~akas~Ea~~~~isdmEnvIedLK~kVskAESRAe~AEskc~lLteTN~E-------LneEL~~L 210 (464)
.-||.-++.+...+++.+..-++...+++-+.+--..+|..+....-.-+..+.|+--|+-.=-. |-..|...
T Consensus 421 ~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE 500 (697)
T PF09726_consen 421 SRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEE 500 (697)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36888888888888877777666666666666655556665555555555555554444433221 22223333
Q ss_pred hcCCCCcchhhhhhHHHHhhHHHHHHHhH-hhhhh-------hHHHHHhHHHHHhhHHHHHHHHHhhhhhhhhhhhhhhh
Q 012393 211 KGNNDSNTKKVGILENQLRDLEIQLQQAK-VSSEA-------SQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEE 282 (464)
Q Consensus 211 ks~~s~~~ek~~~LE~qLkese~QLqhA~-As~eA-------s~eqQ~mL~stikDME~vIeDLksKv~kaE~rae~~E~ 282 (464)
+. .-..+|+||.+-.-+-..+. +++.+ +.|-...+.....|||.=|.-|...+-..|.+
T Consensus 501 ~~-------~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~------ 567 (697)
T PF09726_consen 501 RR-------QRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQ------ 567 (697)
T ss_pred HH-------HHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 32 24455555554322211111 11111 12444467778888887666666665555544
Q ss_pred hhhhhhccchhhhhhhhhhhhH----HHHHHHhhHH--HHHHHHhhHH-HHHHHhHHHHHHHHHHHHHHHHH---HHHHH
Q 012393 283 QCIVLSEDNFELKNKQSFMRDK----IKILESSLNR--ANIEKAASAK-EVNHRTKLMMEMVMQLATQRELI---QKQVY 352 (464)
Q Consensus 283 kc~~LsEtN~eLneELsflrsk----l~~LE~sL~~--A~~~K~~Tak-dI~~~tK~i~dLV~qLa~ERErL---~~Qis 352 (464)
|.. |..|+.-||.- -.+.|.-+++ |-.+|..+-+ -+..-|++=.||...|..=|-.| +.||.
T Consensus 568 -~~~-------~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~ 639 (697)
T PF09726_consen 568 -IRE-------LESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLR 639 (697)
T ss_pred -HHH-------HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 33333333332 1123333322 3444554443 34445888889999998755444 44444
Q ss_pred HhhhhhhHHHHHHhh
Q 012393 353 SLTSENKLLVEKLQY 367 (464)
Q Consensus 353 sl~~eNkiL~~k~k~ 367 (464)
.==+|=.-|..|+.+
T Consensus 640 ~~d~ei~~lk~ki~~ 654 (697)
T PF09726_consen 640 KKDKEIEELKAKIAQ 654 (697)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333334555554
No 65
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=93.96 E-value=11 Score=40.88 Aligned_cols=173 Identities=17% Similarity=0.248 Sum_probs=79.3
Q ss_pred hHHHHHHHhHHHHHhhhhHHHHHhhhcC-ch------hhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHH
Q 012393 99 SELKSKLGDFIEQLKAKDMVLQKLESTK-NS------EVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNF 171 (464)
Q Consensus 99 seLksKLk~s~EQLe~k~~~Lekl~~s~-~S------E~~sL~eKV~sLEeQLkese~Ql~~akas~Ea~~~~isdmEnv 171 (464)
.+|.+||...-..+......|.....++ ++ ....++..+.+....|.+....|+.++.........+..+.+-
T Consensus 238 k~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~E 317 (522)
T PF05701_consen 238 KDLESKLAEASAELESLQAELEAAKESKLEEEAEAKEKSSELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSE 317 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555554444444443320 11 1122333355555555555555555554444444444444444
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHh
Q 012393 172 IESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSM 251 (464)
Q Consensus 172 IedLK~kVskAESRAe~AEskc~lLteTN~ELneEL~~Lks~~s~~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~m 251 (464)
++..|..+.....|...+.+.+..|..-=..+..+|...+.......+....+-..|+..-...+.|+.-+...+.+-..
T Consensus 318 Le~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~ 397 (522)
T PF05701_consen 318 LEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEK 397 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555554444433344444444444321112234455566666666666666555544443333
Q ss_pred HHHHHhhHHHHHHHHHhhhh
Q 012393 252 LYSAIWDMETLIEDLKSKVS 271 (464)
Q Consensus 252 L~stikDME~vIeDLksKv~ 271 (464)
+..-+......|.....++.
T Consensus 398 ~k~E~e~~ka~i~t~E~rL~ 417 (522)
T PF05701_consen 398 AKEEAEQTKAAIKTAEERLE 417 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444433
No 66
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=93.89 E-value=2.8 Score=38.83 Aligned_cols=102 Identities=25% Similarity=0.268 Sum_probs=68.9
Q ss_pred HHhhhcCchhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhh
Q 012393 120 QKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDT 199 (464)
Q Consensus 120 ekl~~s~~SE~~sL~eKV~sLEeQLkese~Ql~~akas~Ea~~~~isdmEnvIedLK~kVskAESRAe~AEskc~lLteT 199 (464)
++|..+ .++.-+|.++|-+||..|..++.....+...++.+...+.+ |+..++..-+.-...+....-|+.-
T Consensus 10 ~kLK~~-~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~-------L~~el~~lt~el~~L~~EL~~l~sE 81 (140)
T PF10473_consen 10 EKLKES-ESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIET-------LEEELEELTSELNQLELELDTLRSE 81 (140)
T ss_pred HHHHHH-HHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444 58888999999999999999999888877776655555444 4445544444555555566666666
Q ss_pred hHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHH
Q 012393 200 NLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQ 236 (464)
Q Consensus 200 N~ELneEL~~Lks~~s~~~ek~~~LE~qLkese~QLq 236 (464)
+..|..++.-.+++ +..||.....+...|+
T Consensus 82 k~~L~k~lq~~q~k-------v~eLE~~~~~~~~~l~ 111 (140)
T PF10473_consen 82 KENLDKELQKKQEK-------VSELESLNSSLENLLQ 111 (140)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHhHHHHHHHH
Confidence 77777777666664 6666666655544444
No 67
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=93.69 E-value=15 Score=41.42 Aligned_cols=241 Identities=22% Similarity=0.227 Sum_probs=118.1
Q ss_pred hhhHHHHHhHHHHHHHHHHHHHhhcchHHHHhhhhHHHhhhhhHHhhhccccccchhHHHHHHHhHHHHHhhhhHHHHHh
Q 012393 43 HHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKL 122 (464)
Q Consensus 43 ~~~eqE~~~lEEaa~~~~eR~~EAENasEvL~G~Skel~gkLq~~Qf~L~as~~REseLksKLk~s~EQLe~k~~~Lekl 122 (464)
...+...++=|-+--+||+++.+|---.=+|.+.. ...++++- + +++.+... ++|+....++.
T Consensus 76 D~LtkRsk~aE~afl~vye~L~eaPDP~pll~sa~-~~l~k~~~------~----~~e~~~lk----~~lee~~~el~-- 138 (629)
T KOG0963|consen 76 DNLTKRSKFAEAAFLDVYEKLIEAPDPVPLLASAA-ELLNKQQK------A----SEENEELK----EELEEVNNELA-- 138 (629)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhhCCCCchHHHHHH-HHhhhhhh------h----hhhHHHHH----HHHHHHHHHHh--
Confidence 34556677778888888888888887766665533 33333333 2 22222221 22222222222
Q ss_pred hhcCchhhhhHHHHHHHHHHHHHHHHHHHhhhhh----chhh-----hHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHH
Q 012393 123 ESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANA----CFQT-----SQEQLNEMDNFIESLKESLYGAESRAESAEEKV 193 (464)
Q Consensus 123 ~~s~~SE~~sL~eKV~sLEeQLkese~Ql~~aka----s~Ea-----~~~~isdmEnvIedLK~kVskAESRAe~AEskc 193 (464)
...++..+|.-|++.+++++.++....- ..+. ..+....+.+....+++++..+|.
T Consensus 139 ------~~k~qq~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~~~le~--------- 203 (629)
T KOG0963|consen 139 ------DLKTQQVTVRNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEEQNLQEQLEELEK--------- 203 (629)
T ss_pred ------hhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 2234555677777777777766432211 1111 122344444444444444444443
Q ss_pred HhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhh----hhhhHHHHHhHHHHHhhHHHHHHHHHhh
Q 012393 194 TQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVS----SEASQEQQSMLYSAIWDMETLIEDLKSK 269 (464)
Q Consensus 194 ~lLteTN~ELneEL~~Lks~~s~~~ek~~~LE~qLkese~QLqhA~As----~eAs~eqQ~mL~stikDME~vIeDLksK 269 (464)
|+..|...+.....++-..+.. +.+-..+=++++.-+.|=-+.|.+|+.-
T Consensus 204 --------------------------ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e 257 (629)
T KOG0963|consen 204 --------------------------KISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLERE 257 (629)
T ss_pred --------------------------HHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555544 3333444555655555555788887777
Q ss_pred hhhhhhhhhhhhhhhhhhhccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 012393 270 VSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQK 349 (464)
Q Consensus 270 v~kaE~rae~~E~kc~~LsEtN~eLneELsflrskl~~LE~sL~~A~~~K~~TakdI~~~tK~i~dLV~qLa~ERErL~~ 349 (464)
+...+..+ ...|......= -.-+..+...|++ -..+|.--++=|.-+-.-|+-||+....
T Consensus 258 ~e~L~~ql----------~~~N~~~~~~~---~~~i~~~~~~L~~-------kd~~i~~L~~di~~~~~S~~~e~e~~~~ 317 (629)
T KOG0963|consen 258 VEQLREQL----------AKANSSKKLAK---IDDIDALGSVLNQ-------KDSEIAQLSNDIERLEASLVEEREKHKA 317 (629)
T ss_pred HHHHHHHH----------Hhhhhhhhhcc---CCchHHHHHHHhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76666442 22333221110 0000111111111 1122333345555556666666666666
Q ss_pred HHHHhhhhhhHH
Q 012393 350 QVYSLTSENKLL 361 (464)
Q Consensus 350 Qissl~~eNkiL 361 (464)
||++|-++++-.
T Consensus 318 qI~~le~~l~~~ 329 (629)
T KOG0963|consen 318 QISALEKELKAK 329 (629)
T ss_pred HHHHHHHHHHHH
Confidence 666666665544
No 68
>PRK11637 AmiB activator; Provisional
Probab=93.68 E-value=10 Score=39.55 Aligned_cols=6 Identities=33% Similarity=0.794 Sum_probs=3.2
Q ss_pred cceeee
Q 012393 456 GLTFQV 461 (464)
Q Consensus 456 ~~~~~~ 461 (464)
+|-|+|
T Consensus 408 ~l~fei 413 (428)
T PRK11637 408 SLYFEI 413 (428)
T ss_pred eEEEEE
Confidence 355555
No 69
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=93.65 E-value=20 Score=42.69 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=14.8
Q ss_pred ccchhHHHHHHHhHHHHHhhhhH
Q 012393 95 LQRESELKSKLGDFIEQLKAKDM 117 (464)
Q Consensus 95 ~~REseLksKLk~s~EQLe~k~~ 117 (464)
..-|.+|+.+++.+..++.....
T Consensus 599 ~~~ee~L~~~l~~~~~~l~~~~~ 621 (1201)
T PF12128_consen 599 AASEEELRERLEQAEDQLQSAEE 621 (1201)
T ss_pred hcChHHHHHHHHHHHHHHHHHHH
Confidence 44566788877777766664443
No 70
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=93.46 E-value=16 Score=41.02 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=17.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhh
Q 012393 129 EVLTMKEKVKSLEEQLKESEIRLQN 153 (464)
Q Consensus 129 E~~sL~eKV~sLEeQLkese~Ql~~ 153 (464)
|-......|..||.+|.+...|++.
T Consensus 44 Ek~~~~~~V~eLE~sL~eLk~q~~~ 68 (617)
T PF15070_consen 44 EKEHDISRVQELERSLSELKNQMAE 68 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3335556788888888887777654
No 71
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=93.17 E-value=15 Score=39.90 Aligned_cols=43 Identities=26% Similarity=0.251 Sum_probs=26.4
Q ss_pred hHHHhHHHHhhhHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHh
Q 012393 23 DLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLE 65 (464)
Q Consensus 23 dLEkkL~es~~~eeeLk~kL~~~eqE~~~lEEaa~~~~eR~~E 65 (464)
+.-+.|...+.+.++|+.+|..+..+...-.+.++..--|+=+
T Consensus 59 ~~l~ELe~akr~veel~~kLe~~~~~~~~a~~~~e~~k~r~~e 101 (522)
T PF05701_consen 59 QALSELESAKRTVEELKLKLEKAQAEEKQAEEDSELAKFRAKE 101 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHH
Confidence 3445566677777788888877666665555555544444433
No 72
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.07 E-value=2.7 Score=48.47 Aligned_cols=158 Identities=22% Similarity=0.231 Sum_probs=93.3
Q ss_pred hhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHh------
Q 012393 195 QLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKS------ 268 (464)
Q Consensus 195 lLteTN~ELneEL~~Lks~~s~~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~mL~stikDME~vIeDLks------ 268 (464)
...+.+.-.++||+.++...-....+...|.++|.+.+.-.+.-+|....-...|+-+.-..+|=|.|||+++.
T Consensus 727 q~~e~~~t~~eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~~~a~~~~~~~~~~~~~qeqv~El~~~l~e~~~ 806 (970)
T KOG0946|consen 727 QGAEASKTQNEELNAALSENKKLENDQELLTKELNKKNADIESFKATQRSAELSQGSLNDNLGDQEQVIELLKNLSEEST 806 (970)
T ss_pred hHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchhhhhhhhHHHHHHHHHhhhhhhh
Confidence 44456666677788777753323446778888885545545555555443344455566677888888888443
Q ss_pred -------hh--------------hhhhhhhhhhhhhhhhhhccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHhhHH---
Q 012393 269 -------KV--------------SKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAK--- 324 (464)
Q Consensus 269 -------Kv--------------~kaE~rae~~E~kc~~LsEtN~eLneELsflrskl~~LE~sL~~A~~~K~~Tak--- 324 (464)
++ +-+-...++....|..++.++-...++++.|.+|+..+- .+-.+..+|..+.+
T Consensus 807 ~l~~~q~e~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~~-nli~~ltEk~~sl~~qa 885 (970)
T KOG0946|consen 807 RLQELQSELTQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFGN-NLIKELTEKISSLEAQA 885 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhhh-hHHHHHhhhhhhHHHhh
Confidence 11 111112345667788888888888888888888877663 34455556644433
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 012393 325 EVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENK 359 (464)
Q Consensus 325 dI~~~tK~i~dLV~qLa~ERErL~~Qissl~~eNk 359 (464)
|-...+|+++. .+-+.|+..|++.-+++.
T Consensus 886 dse~l~ka~~~------~k~~nl~lki~s~kqeqe 914 (970)
T KOG0946|consen 886 DSETLSKALKT------VKSENLSLKIVSNKQEQE 914 (970)
T ss_pred cchHHHHHHHH------hhcccchhcccchhhhHH
Confidence 22222333332 234667777777766654
No 73
>PRK09039 hypothetical protein; Validated
Probab=92.76 E-value=6.1 Score=40.81 Aligned_cols=59 Identities=10% Similarity=0.239 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHH
Q 012393 133 MKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEE 191 (464)
Q Consensus 133 L~eKV~sLEeQLkese~Ql~~akas~Ea~~~~isdmEnvIedLK~kVskAESRAe~AEs 191 (464)
|++-+.-++++|.+.+.|+...-....--.....+++..+.+|...+..|+.+-...+.
T Consensus 44 Ls~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~ 102 (343)
T PRK09039 44 LSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQA 102 (343)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666654422222223445567777777777777755554443333
No 74
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=92.30 E-value=10 Score=37.09 Aligned_cols=137 Identities=23% Similarity=0.259 Sum_probs=78.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHH--------------HHH
Q 012393 129 EVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEE--------------KVT 194 (464)
Q Consensus 129 E~~sL~eKV~sLEeQLkese~Ql~~akas~Ea~~~~isdmEnvIedLK~kVskAESRAe~AEs--------------kc~ 194 (464)
....|.+.+..|.+|++...--++-|++ ++.-++|||.-+..-|......-+ +..
T Consensus 37 ~na~L~~e~~~L~~q~~s~Qqal~~aK~-----------l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~ 105 (193)
T PF14662_consen 37 GNAQLAEEITDLRKQLKSLQQALQKAKA-----------LEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIE 105 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457888899999999977533444433 233344444444444444444444 444
Q ss_pred hhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHhhhhhhh
Q 012393 195 QLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAE 274 (464)
Q Consensus 195 lLteTN~ELneEL~~Lks~~s~~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~mL~stikDME~vIeDLksKv~kaE 274 (464)
-|-+-|..|..+.+-|+.+.-.=+.+-..|=+||.+++.=+-+-.|.+.-+--+..-|..+|--.-.++++|+.+.++.|
T Consensus 106 ~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LE 185 (193)
T PF14662_consen 106 TLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEELKKTIEEYRSITEELRLEKSRLE 185 (193)
T ss_pred HHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555541101234455667776666555554444444444455566777777788888888888777
Q ss_pred hh
Q 012393 275 SK 276 (464)
Q Consensus 275 ~r 276 (464)
..
T Consensus 186 eq 187 (193)
T PF14662_consen 186 EQ 187 (193)
T ss_pred HH
Confidence 43
No 75
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=92.19 E-value=31 Score=41.16 Aligned_cols=33 Identities=18% Similarity=0.033 Sum_probs=21.0
Q ss_pred cccccCCCCCCCccccchhhhhhHHhhhh-hccc
Q 012393 386 ELLINPTNNLAGATVKTSEDAVSLMKSVQ-AGTH 418 (464)
Q Consensus 386 ~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~ 418 (464)
+...|=.|.+++=-|..-.|+..|-+-.| .++|
T Consensus 513 aIE~~L~n~lnaFiv~sh~D~~~Lr~i~~~~~~~ 546 (1074)
T KOG0250|consen 513 AIERCLGNLLNAFIVTSHKDARILRAIMRRLKIP 546 (1074)
T ss_pred HHHHHHHHhhhhheeCCHhhHHHHHHHHHHcCCC
Confidence 33445566677888888889887655443 3444
No 76
>PRK11281 hypothetical protein; Provisional
Probab=91.94 E-value=10 Score=45.13 Aligned_cols=66 Identities=18% Similarity=0.225 Sum_probs=37.9
Q ss_pred HHHHHhHHHHHhhHHHHHHHHHhhhhh---hhh--hhhhhhh-h----------hhhhhccchhhhhhhhhhhhHHHHHH
Q 012393 246 QEQQSMLYSAIWDMETLIEDLKSKVSK---AES--KTESVEE-Q----------CIVLSEDNFELKNKQSFMRDKIKILE 309 (464)
Q Consensus 246 ~eqQ~mL~stikDME~vIeDLksKv~k---aE~--rae~~E~-k----------c~~LsEtN~eLneELsflrskl~~LE 309 (464)
+.|+..+...+...+.-|..|++.+.. .++ .++.++. + ..-+.+.|..|+++|.-.-.|++.+-
T Consensus 226 ~~q~d~~~~~~~~~~~~~~~lq~~in~kr~~~se~~~~~a~~~~~~~~~~~~p~i~~~~~~N~~Ls~~L~~~t~~~~~l~ 305 (1113)
T PRK11281 226 QKQRDYLTARIQRLEHQLQLLQEAINSKRLTLSEKTVQEAQSQDEAARIQANPLVAQELEINLQLSQRLLKATEKLNTLT 305 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344554555666666666666665554 221 1111111 1 12255779999999988888887774
Q ss_pred Hh
Q 012393 310 SS 311 (464)
Q Consensus 310 ~s 311 (464)
..
T Consensus 306 ~~ 307 (1113)
T PRK11281 306 QQ 307 (1113)
T ss_pred HH
Confidence 43
No 77
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=91.93 E-value=0.046 Score=60.33 Aligned_cols=69 Identities=17% Similarity=0.258 Sum_probs=0.0
Q ss_pred HHHHhHHHHHhhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhh-------hhhhhhhhhHHHHHHHhhHHH
Q 012393 247 EQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFEL-------KNKQSFMRDKIKILESSLNRA 315 (464)
Q Consensus 247 eqQ~mL~stikDME~vIeDLksKv~kaE~rae~~E~kc~~LsEtN~eL-------neELsflrskl~~LE~sL~~A 315 (464)
++.+-+.+.+.+++..|.+|...+..+...++.++.+...+...+..| .+|..|||.-|++.+.-....
T Consensus 357 ek~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd~e~~~~ 432 (722)
T PF05557_consen 357 EKLGSLQSELRELEEEIQELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLKSYDKEETTM 432 (722)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 445556677888888888888777777777777777666666555544 578889998888876655433
No 78
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=91.62 E-value=13 Score=35.69 Aligned_cols=146 Identities=16% Similarity=0.197 Sum_probs=92.1
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhh-----hhhhHHHHHHhhhhhhH
Q 012393 127 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAES-----RAESAEEKVTQLTDTNL 201 (464)
Q Consensus 127 ~SE~~sL~eKV~sLEeQLkese~Ql~~akas~Ea~~~~isdmEnvIedLK~kVskAES-----RAe~AEskc~lLteTN~ 201 (464)
||+ ..|.--+..++..|.+....+..+.+.......++.+.+..+.++..+.-.|=. =|-.|-.+-....++-.
T Consensus 24 DP~-~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~ 102 (219)
T TIGR02977 24 DPE-KMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAE 102 (219)
T ss_pred CHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 565 245567777777777777777777776666666777777777777777766643 34445555566677777
Q ss_pred HHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhh-------hhHHHHHh---HHH-HHhhHHHHHHHHHhhh
Q 012393 202 ELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSE-------ASQEQQSM---LYS-AIWDMETLIEDLKSKV 270 (464)
Q Consensus 202 ELneEL~~Lks~~s~~~ek~~~LE~qLkese~QLqhA~As~e-------As~eqQ~m---L~s-tikDME~vIeDLksKv 270 (464)
.|...+..++.. +..|..+|..++.+++.+++--. +-+-+..+ +.+ ...+-...++.+..|+
T Consensus 103 ~l~~~~~~~~~~-------v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~fer~e~ki 175 (219)
T TIGR02977 103 ALERELAAVEET-------LAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQLDSGRSDEAMARFEQYERRV 175 (219)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHH
Confidence 777777777776 67777777777777777764433 11111111 111 1223335666677888
Q ss_pred hhhhhhhhhh
Q 012393 271 SKAESKTESV 280 (464)
Q Consensus 271 ~kaE~rae~~ 280 (464)
...|.+++-.
T Consensus 176 ~~~ea~aea~ 185 (219)
T TIGR02977 176 DELEAQAESY 185 (219)
T ss_pred HHHHHHHHHh
Confidence 8877776654
No 79
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=91.40 E-value=8.3 Score=43.79 Aligned_cols=87 Identities=18% Similarity=0.247 Sum_probs=71.8
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHH
Q 012393 127 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEE 206 (464)
Q Consensus 127 ~SE~~sL~eKV~sLEeQLkese~Ql~~akas~Ea~~~~isdmEnvIedLK~kVskAESRAe~AEskc~lLteTN~ELneE 206 (464)
-++-..++|++.-||.--....+|..-....++|..++|.|+|.+|+.-..++.-+|--.++---..+-|.---++|=.|
T Consensus 103 ~~~~~~yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqellsrtsLETqKlDLmae 182 (861)
T KOG1899|consen 103 CPEYPEYQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQKLDLMAE 182 (861)
T ss_pred CCcchHHHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHH
Confidence 37888999999999988777778877777778889999999999999999999888887777655556666667777788
Q ss_pred HhhhhcC
Q 012393 207 INFLKGN 213 (464)
Q Consensus 207 L~~Lks~ 213 (464)
++.||=+
T Consensus 183 vSeLKLk 189 (861)
T KOG1899|consen 183 VSELKLK 189 (861)
T ss_pred HHHhHHH
Confidence 8888874
No 80
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=90.50 E-value=30 Score=37.82 Aligned_cols=45 Identities=22% Similarity=0.272 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHHHhhhhcC
Q 012393 167 EMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGN 213 (464)
Q Consensus 167 dmEnvIedLK~kVskAESRAe~AEskc~lLteTN~ELneEL~~Lks~ 213 (464)
+++.-|..|+.++..+.... ..-++....+-|..+.+.++.|-+.
T Consensus 253 ~i~~~i~~l~~~i~~~~~~l--~~l~l~~~~~~~~~i~~~Id~Lyd~ 297 (569)
T PRK04778 253 DIEKEIQDLKEQIDENLALL--EELDLDEAEEKNEEIQERIDQLYDI 297 (569)
T ss_pred ChHHHHHHHHHHHHHHHHHH--HhcChHHHHHHHHHHHHHHHHHHHH
Confidence 35555566666655544222 2224444455555666666665543
No 81
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=90.46 E-value=13 Score=37.30 Aligned_cols=129 Identities=19% Similarity=0.238 Sum_probs=81.3
Q ss_pred hhhhhHHhhhccccccchhHHHHHHHhHHHHHhh--hhHHHHHhhhcCchhhhhHHHHHHHHHHHHHHHHHHHhhhhhch
Q 012393 81 LGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKA--KDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACF 158 (464)
Q Consensus 81 ~gkLq~~Qf~L~as~~REseLksKLk~s~EQLe~--k~~~Lekl~~s~~SE~~sL~eKV~sLEeQLkese~Ql~~akas~ 158 (464)
.-.+..++..-++...+-.+++.|++...+++.+ ....+..| +.|..++.++..+||.+|.+..-....-....
T Consensus 51 ~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL----~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i 126 (239)
T COG1579 51 EIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRAL----NIEIQIAKERINSLEDELAELMEEIEKLEKEI 126 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444445555666666666666632 11222222 47888888888888888888888777776666
Q ss_pred hhhHHHHhhhHHHHHHHHHHHHhhhhhhh----hHHHHHHhhh-hhhHHHHHHHhhhhcC
Q 012393 159 QTSQEQLNEMDNFIESLKESLYGAESRAE----SAEEKVTQLT-DTNLELSEEINFLKGN 213 (464)
Q Consensus 159 Ea~~~~isdmEnvIedLK~kVskAESRAe----~AEskc~lLt-eTN~ELneEL~~Lks~ 213 (464)
+.-...+..++.-+.+.+..+..+-..+. ...+++..|+ ++|.+|-.+..-++..
T Consensus 127 ~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~~l~~ell~~yeri~~~ 186 (239)
T COG1579 127 EDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEKLDPELLSEYERIRKN 186 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhc
Confidence 66677777777777777666655544443 3566666665 5677777776666554
No 82
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=90.14 E-value=20 Score=35.19 Aligned_cols=39 Identities=21% Similarity=0.370 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHH
Q 012393 167 EMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSE 205 (464)
Q Consensus 167 dmEnvIedLK~kVskAESRAe~AEskc~lLteTN~ELne 205 (464)
||+.++.-++..+..+|.+....-.+|.-|..+|.++..
T Consensus 6 d~d~~~~~~~~e~~~~E~e~~~l~~k~~e~~~~~~~m~~ 44 (207)
T PF05010_consen 6 DLDAAIKKVQEEVAEKEEEEQELKKKYEELHKENQEMRK 44 (207)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHH
Confidence 444444444444444444444444444444444444433
No 83
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=90.07 E-value=23 Score=36.97 Aligned_cols=69 Identities=17% Similarity=0.228 Sum_probs=47.2
Q ss_pred hhhhhhhccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 012393 282 EQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLL 361 (464)
Q Consensus 282 ~kc~~LsEtN~eLneELsflrskl~~LE~sL~~A~~~K~~TakdI~~~tK~i~dLV~qLa~ERErL~~Qissl~~eNkiL 361 (464)
.-.-.+.+.--++..|-.+|+.|+..|-.-|+.+........=||. .|-.|--.||.+|..+-.|..++
T Consensus 147 ~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDID-----------aLi~ENRyL~erl~q~qeE~~l~ 215 (319)
T PF09789_consen 147 RDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDID-----------ALIMENRYLKERLKQLQEEKELL 215 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHH-----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355667777899999999999999998888777655444333433 34455666666666666666666
No 84
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=89.65 E-value=22 Score=34.88 Aligned_cols=163 Identities=18% Similarity=0.249 Sum_probs=88.3
Q ss_pred hHHHhHHHHhhhHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHhhcchHHHHhhhhHHHhhhhhHHhhhccccccchhHHH
Q 012393 23 DLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELK 102 (464)
Q Consensus 23 dLEkkL~es~~~eeeLk~kL~~~eqE~~~lEEaa~~~~eR~~EAENasEvL~G~Skel~gkLq~~Qf~L~as~~REseLk 102 (464)
.+|+.+.....-.+.|..+...+-.-...+...++..+.|-..-.-.++-+.....+++.++...-- ++....-.++.
T Consensus 49 ~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~--~~~~~~~~~l~ 126 (264)
T PF06008_consen 49 PLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNE--NGDQLPSEDLQ 126 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--ccCCCCHHHHH
Confidence 3445555555555555556555555555566666666655555555555455555555555543322 55566778888
Q ss_pred HHHHhHHHHHhhh-hHHHHHhhhc---CchhhhhHHHHHHHH-HHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHH
Q 012393 103 SKLGDFIEQLKAK-DMVLQKLEST---KNSEVLTMKEKVKSL-EEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKE 177 (464)
Q Consensus 103 sKLk~s~EQLe~k-~~~Lekl~~s---~~SE~~sL~eKV~sL-EeQLkese~Ql~~akas~Ea~~~~isdmEnvIedLK~ 177 (464)
..|+.+..=|..- +..+...+.. --.+|..|-++|+.. .+...+.+.-.. .....++++..=..||.+
T Consensus 127 ~~l~ea~~mL~emr~r~f~~~~~~Ae~El~~A~~LL~~v~~~~~~~~~~~~~l~~-------~i~~~L~~~~~kL~Dl~~ 199 (264)
T PF06008_consen 127 RALAEAQRMLEEMRKRDFTPQRQNAEDELKEAEDLLSRVQKWFQKPQQENESLAE-------AIRDDLNDYNAKLQDLRD 199 (264)
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 8888877666531 1112222111 124556666666554 444443333222 244456666666667777
Q ss_pred HHHhhhhhhhhHHHHHH
Q 012393 178 SLYGAESRAESAEEKVT 194 (464)
Q Consensus 178 kVskAESRAe~AEskc~ 194 (464)
.+-+|...+..|+..+.
T Consensus 200 ~l~eA~~~~~ea~~ln~ 216 (264)
T PF06008_consen 200 LLNEAQNKTREAEDLNR 216 (264)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777777666664443
No 85
>PF15294 Leu_zip: Leucine zipper
Probab=89.43 E-value=16 Score=37.49 Aligned_cols=161 Identities=19% Similarity=0.252 Sum_probs=105.3
Q ss_pred hHHHHHHhhhhhhHHHHHHH------hhhhcCCCCcchhhhhhHHH-HhhHHHHHHHhHhhhhh--hHHHHHhHHHHHhh
Q 012393 188 SAEEKVTQLTDTNLELSEEI------NFLKGNNDSNTKKVGILENQ-LRDLEIQLQQAKVSSEA--SQEQQSMLYSAIWD 258 (464)
Q Consensus 188 ~AEskc~lLteTN~ELneEL------~~Lks~~s~~~ek~~~LE~q-Lkese~QLqhA~As~eA--s~eqQ~mL~stikD 258 (464)
..|++.+--.+||+-|=..| .-||-+.+ .+.||++ |-+-=...+.+-+++.. +..-.......+.+
T Consensus 49 ~vesEL~N~~htn~lllrql~~qAek~~lkl~~d-----iselEn~eLLe~i~~~E~~~~~~~~~~~~~~~~~KL~pl~e 123 (278)
T PF15294_consen 49 EVESELINTSHTNVLLLRQLFSQAEKWYLKLQTD-----ISELENRELLEQIAEFEKQEFTSSFKPNQETSKPKLEPLNE 123 (278)
T ss_pred HHHHHHHhHHHhHHHHHHHHHHHHHHHHHHhccc-----HHHHHHHHHHHHHHHHHHhhhcccCCccccccccccccccc
Confidence 34666777778888776653 22344433 4455543 43322233333344333 11111111222322
Q ss_pred ------HHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhhhhhhhhhh-------H---------HHHHHHhhHHHH
Q 012393 259 ------METLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRD-------K---------IKILESSLNRAN 316 (464)
Q Consensus 259 ------ME~vIeDLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrs-------k---------l~~LE~sL~~A~ 316 (464)
+-.-|.+|+.-.-++..|.-+.+.+|+..-+.+.+|...|.-++. + +.+||+++.++.
T Consensus 124 ~g~~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK 203 (278)
T PF15294_consen 124 SGGSELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALK 203 (278)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHH
Confidence 336799999999999999999999999999999999999998887 2 456788888887
Q ss_pred HHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 012393 317 IEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYS 353 (464)
Q Consensus 317 ~~K~~TakdI~~~tK~i~dLV~qLa~ERErL~~Qiss 353 (464)
.+=..++.|.....+.+++-|.--=.+.-|.+.|++.
T Consensus 204 ~e~ek~~~d~~~~~k~L~e~L~~~KhelL~~QeqL~~ 240 (278)
T PF15294_consen 204 SELEKALQDKESQQKALEETLQSCKHELLRVQEQLSL 240 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhc
Confidence 7767778888877777777766666667777777443
No 86
>PRK10698 phage shock protein PspA; Provisional
Probab=89.29 E-value=23 Score=34.61 Aligned_cols=146 Identities=16% Similarity=0.216 Sum_probs=79.9
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhh-----hhhHHHHHHhhhhhhH
Q 012393 127 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESR-----AESAEEKVTQLTDTNL 201 (464)
Q Consensus 127 ~SE~~sL~eKV~sLEeQLkese~Ql~~akas~Ea~~~~isdmEnvIedLK~kVskAESR-----Ae~AEskc~lLteTN~ 201 (464)
||+ ..|.--+..+++.+.+....+..+.+.......++.+.+..+.+...+.-.|=.+ |-.|-.+-....+.-.
T Consensus 24 DP~-k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~ 102 (222)
T PRK10698 24 DPQ-KLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIA 102 (222)
T ss_pred CHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 555 2344466677777777666666666665556667777777777777666665443 3333333344455555
Q ss_pred HHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhH----------hhhhhhHHHHHhHHH-HHhhHHHHHHHHHhhh
Q 012393 202 ELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAK----------VSSEASQEQQSMLYS-AIWDMETLIEDLKSKV 270 (464)
Q Consensus 202 ELneEL~~Lks~~s~~~ek~~~LE~qLkese~QLqhA~----------As~eAs~eqQ~mL~s-tikDME~vIeDLksKv 270 (464)
.|..++...+.. +..|..++..++..++.++ .++.|.+.=+.++.. ...+--..++.+..|+
T Consensus 103 ~l~~~~~~~~~~-------~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~~f~rmE~ki 175 (222)
T PRK10698 103 TLEHEVTLVDET-------LARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGKLDEAMARFESFERRI 175 (222)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHH
Confidence 566666555554 5555555555555555555 222222221111111 1111224566677788
Q ss_pred hhhhhhhhhh
Q 012393 271 SKAESKTESV 280 (464)
Q Consensus 271 ~kaE~rae~~ 280 (464)
...|.+++.+
T Consensus 176 ~~~Ea~aea~ 185 (222)
T PRK10698 176 DQMEAEAESH 185 (222)
T ss_pred HHHHHHHhHh
Confidence 8878777765
No 87
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=89.00 E-value=12 Score=36.13 Aligned_cols=46 Identities=28% Similarity=0.443 Sum_probs=32.7
Q ss_pred HHHHHhhhhhhhhhhhhhhhhhhhhhccchhhhhhhhhhhhHHHHHHHhhHHHHHHH
Q 012393 263 IEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEK 319 (464)
Q Consensus 263 IeDLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrskl~~LE~sL~~A~~~K 319 (464)
.-++++|.-|.+ .+|..|.-||-+- ++-.+|+..||.+|..-.+.+
T Consensus 112 ~~~~~~klekLe----~LE~E~~rLt~~Q-------~~ae~Ki~~LE~KL~eEehqR 157 (178)
T PF14073_consen 112 QSELQAKLEKLE----KLEKEYLRLTATQ-------SLAETKIKELEEKLQEEEHQR 157 (178)
T ss_pred hhhHHHHHHHHH----HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 445676666554 6677798777654 445899999999998876653
No 88
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=88.90 E-value=28 Score=35.06 Aligned_cols=145 Identities=21% Similarity=0.280 Sum_probs=103.3
Q ss_pred hhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccc--hhhhhhh
Q 012393 221 VGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDN--FELKNKQ 298 (464)
Q Consensus 221 ~~~LE~qLkese~QLqhA~As~eAs~eqQ~mL~stikDME~vIeDLksKv~kaE~rae~~E~kc~~LsEtN--~eLneEL 298 (464)
...|+...+....-|..|++--++....=.-+.-++.||++-|-.+.+-+.+++.|.+.++.+-...++.+ ..|+.|+
T Consensus 19 ~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~ 98 (239)
T COG1579 19 KDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEI 98 (239)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 34455555555555566665554443222224446788888888888888888888899999887777665 4689999
Q ss_pred hhhhhHHHHHHHhhHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHH-------HHHHhhhhhhHHHHHH
Q 012393 299 SFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQK-------QVYSLTSENKLLVEKL 365 (464)
Q Consensus 299 sflrskl~~LE~sL~~A~~~K~~TakdI~~~tK~i~dLV~qLa~ERErL~~-------Qissl~~eNkiL~~k~ 365 (464)
.....|..+|+..|.....+...-.+.|..-..-+.++...++..+.++-. +...+..+--.|+.++
T Consensus 99 ~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~~l 172 (239)
T COG1579 99 QIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEKL 172 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999888888888888888888888888877776544 4444555555555444
No 89
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=88.85 E-value=45 Score=37.48 Aligned_cols=109 Identities=19% Similarity=0.154 Sum_probs=73.4
Q ss_pred HHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHH-----------HHhhhhcCCCCcchhhhhhHHHHhh
Q 012393 162 QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSE-----------EINFLKGNNDSNTKKVGILENQLRD 230 (464)
Q Consensus 162 ~~~isdmEnvIedLK~kVskAESRAe~AEskc~lLteTN~ELne-----------EL~~Lks~~s~~~ek~~~LE~qLke 230 (464)
++.++.+.++|+++++-+..-+.++..++++|.+.-+++.++.. +|..|+.. -+-.....+..++.
T Consensus 445 q~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~l~l~---~~~~m~~a~~~v~s 521 (581)
T KOG0995|consen 445 QEHFSNKASTIEEKIQILGEIELELKKAESKYELKKEEAEEEWKKCRKEIEKLEEELLNLKLV---LNTSMKEAEELVKS 521 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 44777999999999999999999999999999999999988765 24444332 12335556677777
Q ss_pred HHHHHHHhHhhhhhhHHH-----HHhHHHHHhhHH---HHHHHHHhhhhhh
Q 012393 231 LEIQLQQAKVSSEASQEQ-----QSMLYSAIWDME---TLIEDLKSKVSKA 273 (464)
Q Consensus 231 se~QLqhA~As~eAs~eq-----Q~mL~stikDME---~vIeDLksKv~ka 273 (464)
.+..++.++++.+--..+ +..+-..+..+. .=|+|++..+.++
T Consensus 522 ~e~el~~~~~~~~eer~ki~~ql~~~i~~i~~~k~~iqs~le~~k~~~~~~ 572 (581)
T KOG0995|consen 522 IELELDRMVATGEEERQKIAKQLFAVIDQISDFKVSIQSSLENLKADLHKE 572 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777788777766544321 122223444444 3456666655543
No 90
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=88.84 E-value=25 Score=34.52 Aligned_cols=174 Identities=17% Similarity=0.274 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhh----hhhhHHHHHHhhhhhhHHHHHHHhhhhc
Q 012393 137 VKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAES----RAESAEEKVTQLTDTNLELSEEINFLKG 212 (464)
Q Consensus 137 V~sLEeQLkese~Ql~~akas~Ea~~~~isdmEnvIedLK~kVskAES----RAe~AEskc~lLteTN~ELneEL~~Lks 212 (464)
+..+.+++.+++..........++.......|..+|+++...|+..-. ....+...+..+..-..++...
T Consensus 11 ~~~~~~e~~~~E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~d------ 84 (207)
T PF05010_consen 11 IKKVQEEVAEKEEEEQELKKKYEELHKENQEMRKIMEEYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQAYAD------ 84 (207)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHH------
Confidence 444455555666666666666666777778888888888887776433 3333333443333333333333
Q ss_pred CCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccch
Q 012393 213 NNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNF 292 (464)
Q Consensus 213 ~~s~~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~mL~stikDME~vIeDLksKv~kaE~rae~~E~kc~~LsEtN~ 292 (464)
++++|+..-++-.+.+..+..++.-+.--..|...+.|+..-|.....++...- .+|+.| |.-.|-
T Consensus 85 --------L~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK---~hAeek---L~~ANe 150 (207)
T PF05010_consen 85 --------LNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALK---AHAEEK---LEKANE 150 (207)
T ss_pred --------HHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH---HHHHHH
Confidence 566666666766677777777766653333466667776666666665554332 334433 233444
Q ss_pred hhhhhhhhhhhHHHHHHHhhHHHHHHHHhhHHHHHHHh
Q 012393 293 ELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRT 330 (464)
Q Consensus 293 eLneELsflrskl~~LE~sL~~A~~~K~~TakdI~~~t 330 (464)
++.+--+.+.+.+-.|+++|..+...-.+..+.+.-++
T Consensus 151 ei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~ 188 (207)
T PF05010_consen 151 EIAQVRSKHQAELLALQASLKKEEMKVQSLEESLEQKT 188 (207)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444455566666665544444443443333
No 91
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=88.55 E-value=64 Score=38.82 Aligned_cols=213 Identities=21% Similarity=0.284 Sum_probs=124.2
Q ss_pred hhhHHhhhccccccchhHHHHHHHhHHHHHhhhhHHHHHhhhc---CchhhhhHHHHHHHHHHHHHHHHHHHhhhhhchh
Q 012393 83 RFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLEST---KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQ 159 (464)
Q Consensus 83 kLq~~Qf~L~as~~REseLksKLk~s~EQLe~k~~~Lekl~~s---~~SE~~sL~eKV~sLEeQLkese~Ql~~akas~E 159 (464)
++..++...+|...|=.-++..+++.--+|...+.+++..++- ..|+...+..++...|...++.+.+...+....=
T Consensus 677 e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if 756 (1141)
T KOG0018|consen 677 EVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEISEIKRKLQNREGEMKELEERMNKVEDRIF 756 (1141)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555444445555555555555555555554443 3466666666666666666666666554443321
Q ss_pred h--hHH---HHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHH
Q 012393 160 T--SQE---QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQ 234 (464)
Q Consensus 160 a--~~~---~isdmEnvIedLK~kVskAESRAe~AEskc~lLteTN~ELneEL~~Lks~~s~~~ek~~~LE~qLkese~Q 234 (464)
+ |.. .|.+.|+.=. .+.-.-|-..++.--.-|.-.|+|.+.+ .+..+++-+++.+...+.+
T Consensus 757 ~~f~~~igv~ir~Yee~~~------------~~~~a~k~~ef~~q~~~l~~~l~fe~~~--d~~~~ve~~~~~v~~~~~~ 822 (1141)
T KOG0018|consen 757 KGFCRRIGVRIREYEEREL------------QQEFAKKRLEFENQKAKLENQLDFEKQK--DTQRRVERWERSVEDLEKE 822 (1141)
T ss_pred HHhhhhcCeeeehHHHHHH------------HHHHHHHHHHHHHHHHHHhhhhhheecc--cHHHHHHHHHHHHHHHHHh
Confidence 1 100 1333322111 1111123333444444566678888884 2567888888888877777
Q ss_pred HHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhhhhhhhhhhHHHHHHHhhHH
Q 012393 235 LQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNR 314 (464)
Q Consensus 235 LqhA~As~eAs~eqQ~mL~stikDME~vIeDLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrskl~~LE~sL~~ 314 (464)
+..-+-..+|..- ....+.-||. .+ ++|+-+.+.++..+...-..|+..=-+|+.++....+.++.++.--|.
T Consensus 823 ~~~~~~~e~~~~k----~i~e~~~~e~--k~-k~~~~~~~~e~~e~~k~~~~~~~~~tkl~~~i~~~es~ie~~~~er~~ 895 (1141)
T KOG0018|consen 823 IEGLKKDEEAAEK----IIAEIEELEK--KN-KSKFEKKEDEINEVKKILRRLVKELTKLDKEITSIESKIERKESERHN 895 (1141)
T ss_pred HHhhHHHHHHHHH----HHhhHHHHHH--HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH
Confidence 6655543333221 1112345555 33 888888888888888888888888888999999999998888766555
Q ss_pred HH
Q 012393 315 AN 316 (464)
Q Consensus 315 A~ 316 (464)
+.
T Consensus 896 lL 897 (1141)
T KOG0018|consen 896 LL 897 (1141)
T ss_pred HH
Confidence 44
No 92
>PRK09039 hypothetical protein; Validated
Probab=88.40 E-value=34 Score=35.47 Aligned_cols=60 Identities=12% Similarity=0.201 Sum_probs=42.3
Q ss_pred hhhhhhhhhhhHHHHHHHhhHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 012393 293 ELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVY 352 (464)
Q Consensus 293 eLneELsflrskl~~LE~sL~~A~~~K~~TakdI~~~tK~i~dLV~qLa~ERErL~~Qis 352 (464)
-||.+|+.||..+..|+.-|..++......-..|..-..-+.....+-.-|-+++.+++.
T Consensus 141 ~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~~~~~~ 200 (343)
T PRK09039 141 LLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNRYRSEFF 200 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 478999999999999999999998877555555555455555555454556666666663
No 93
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=88.13 E-value=26 Score=33.80 Aligned_cols=84 Identities=25% Similarity=0.290 Sum_probs=44.8
Q ss_pred HHHHHHHhHHHHHhhhhHHHHHhhhcCchhhhhHHHHHHHHHHHHHHHHHHHh----------hhhhchhhhHHHHhhhH
Q 012393 100 ELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQ----------NANACFQTSQEQLNEMD 169 (464)
Q Consensus 100 eLksKLk~s~EQLe~k~~~Lekl~~s~~SE~~sL~eKV~sLEeQLkese~Ql~----------~akas~Ea~~~~isdmE 169 (464)
++...|+.-+.++..++...+++-..-..|...|.+-+..+++.+.+..-++. ++++.......++.+++
T Consensus 27 ~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk 106 (201)
T PF13851_consen 27 ELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLK 106 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777666666555444345666666666655555555555443 34444333444444444
Q ss_pred HHHHHHHHHHHhhh
Q 012393 170 NFIESLKESLYGAE 183 (464)
Q Consensus 170 nvIedLK~kVskAE 183 (464)
--.+.|..++.+-+
T Consensus 107 ~e~evL~qr~~kle 120 (201)
T PF13851_consen 107 WEHEVLEQRFEKLE 120 (201)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444433
No 94
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=88.10 E-value=26 Score=33.79 Aligned_cols=136 Identities=22% Similarity=0.271 Sum_probs=66.1
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHH
Q 012393 171 FIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQS 250 (464)
Q Consensus 171 vIedLK~kVskAESRAe~AEskc~lLteTN~ELneEL~~Lks~~s~~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~ 250 (464)
+|..||+.|.....+....+.....+..-|-.|.+-|.-++-. +..|.++|+.++ .-+++-...+....
T Consensus 28 lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e-------~~eL~k~L~~y~----kdK~~L~~~k~rl~ 96 (201)
T PF13851_consen 28 LIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEE-------VEELRKQLKNYE----KDKQSLQNLKARLK 96 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-------HHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 4555566655555555555555555555666666666555543 555666666542 22222222222222
Q ss_pred hHHHHHhhHHHHHHHHHhhhhhhhhhhhhhhhhhhh--------hhccchhhhhhhhhhhhHHHHHHHhhHHHHH
Q 012393 251 MLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIV--------LSEDNFELKNKQSFMRDKIKILESSLNRANI 317 (464)
Q Consensus 251 mL~stikDME~vIeDLksKv~kaE~rae~~E~kc~~--------LsEtN~eLneELsflrskl~~LE~sL~~A~~ 317 (464)
.+-..+++++.=-+.|.-++.+.+.+-+.+..+... -.-.|+=|-.-|.-+...++..+..|.....
T Consensus 97 ~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl~ 171 (201)
T PF13851_consen 97 ELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVLA 171 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555555555555555555443333333221 1123445544455555554444444444433
No 95
>PRK01156 chromosome segregation protein; Provisional
Probab=88.05 E-value=53 Score=37.33 Aligned_cols=20 Identities=10% Similarity=0.330 Sum_probs=8.9
Q ss_pred HHhhHHHHHHHHHhhhhhhh
Q 012393 255 AIWDMETLIEDLKSKVSKAE 274 (464)
Q Consensus 255 tikDME~vIeDLksKv~kaE 274 (464)
.+.++..-|..|.++....+
T Consensus 417 ~~~~l~~~i~~l~~~i~~l~ 436 (895)
T PRK01156 417 KLQDISSKVSSLNQRIRALR 436 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333
No 96
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=88.03 E-value=17 Score=32.44 Aligned_cols=83 Identities=25% Similarity=0.316 Sum_probs=43.7
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhH----H
Q 012393 172 IESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQ----E 247 (464)
Q Consensus 172 IedLK~kVskAESRAe~AEskc~lLteTN~ELneEL~~Lks~~s~~~ek~~~LE~qLkese~QLqhA~As~eAs~----e 247 (464)
++....-+-.|+.+-+.--.+..-. -..|..||.. +..+..++..+...++-|++..+... +
T Consensus 33 l~~q~~~a~~Aq~~YE~El~~Ha~~-------~~~L~~lr~e-------~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~ 98 (132)
T PF07926_consen 33 LESQAKIAQEAQQKYERELVKHAED-------IKELQQLREE-------LQELQQEINELKAEAESAKAELEESEASWEE 98 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH-------HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3334444444555444444443333 3444444443 34444455555555555555544443 3
Q ss_pred HHHhHHHHHhhHHHHHHHHHh
Q 012393 248 QQSMLYSAIWDMETLIEDLKS 268 (464)
Q Consensus 248 qQ~mL~stikDME~vIeDLks 268 (464)
+..+|..-|.+++.=|+||..
T Consensus 99 qk~~le~e~~~~~~r~~dL~~ 119 (132)
T PF07926_consen 99 QKEQLEKELSELEQRIEDLNE 119 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455677778888877777754
No 97
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.90 E-value=63 Score=38.01 Aligned_cols=71 Identities=14% Similarity=0.163 Sum_probs=38.1
Q ss_pred hhhHHHhhhhhHHhhhccccccchhHHHHHHHhHHHHHhhhhHHHHHhhhcCchhhhhHHHHHHHHHHHHHHHHHHHh
Q 012393 75 GISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQ 152 (464)
Q Consensus 75 G~Skel~gkLq~~Qf~L~as~~REseLksKLk~s~EQLe~k~~~Lekl~~s~~SE~~sL~eKV~sLEeQLkese~Ql~ 152 (464)
-+++.....++.+++++.|.+.+=+-=.+.|++..+.|.. .++.=++|++....-..+|.+|+-....|+-
T Consensus 646 ~~~~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~-------e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 646 QLAEKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQV-------ENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3577778889999999998876644444444443333332 2222133444443344444444444444443
No 98
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=87.64 E-value=56 Score=37.11 Aligned_cols=174 Identities=18% Similarity=0.239 Sum_probs=80.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhchhh----hHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHH
Q 012393 131 LTMKEKVKSLEEQLKESEIRLQNANACFQT----SQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEE 206 (464)
Q Consensus 131 ~sL~eKV~sLEeQLkese~Ql~~akas~Ea----~~~~isdmEnvIedLK~kVskAESRAe~AEskc~lLteTN~ELneE 206 (464)
.++.+++..||+.+...+.-+..+..+... +.++.+.--..|.=+=.++..|.+|+..++.+|..|.+-=..-|..
T Consensus 192 ~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~ 271 (629)
T KOG0963|consen 192 QNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSS 271 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 345555555555555554433222222111 2233333333344445566777777777777777776654444444
Q ss_pred HhhhhcCCCCcchhhhhh----HHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHH-------HHHHHHHhhhhh---
Q 012393 207 INFLKGNNDSNTKKVGIL----ENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDME-------TLIEDLKSKVSK--- 272 (464)
Q Consensus 207 L~~Lks~~s~~~ek~~~L----E~qLkese~QLqhA~As~eAs~eqQ~mL~stikDME-------~vIeDLksKv~k--- 272 (464)
...=++- ..+.++.. |+-+..+-.-++|-.+|.- +.-.-....|+++| .+|++|+.|+-.
T Consensus 272 ~~~~~~~---~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~---~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~sD 345 (629)
T KOG0963|consen 272 KKLAKID---DIDALGSVLNQKDSEIAQLSNDIERLEASLV---EEREKHKAQISALEKELKAKISELEELKEKLNSRSD 345 (629)
T ss_pred hhhccCC---chHHHHHHHhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3322222 22333333 3333333333333332211 11111233333333 344444444321
Q ss_pred ------------hhhhh--hhhhhh-------hhhhhccchhhhhhhhhhhhHHHHHHH
Q 012393 273 ------------AESKT--ESVEEQ-------CIVLSEDNFELKNKQSFMRDKIKILES 310 (464)
Q Consensus 273 ------------aE~ra--e~~E~k-------c~~LsEtN~eLneELsflrskl~~LE~ 310 (464)
+=.=+ +++..+ =..|-+.|..|..|++.||+.-..+..
T Consensus 346 YeeIK~ELsiLk~ief~~se~a~~~~~~~~~leslLl~knr~lq~e~a~Lr~~n~~~~~ 404 (629)
T KOG0963|consen 346 YEEIKKELSILKAIEFGDSEEANDEDETAKTLESLLLEKNRKLQNENASLRVANSGLSG 404 (629)
T ss_pred HHHHHHHHHHHHHhhcCCcccccccccccchHHHHHHHHHhhhhHHHHHHhccccccch
Confidence 11111 111111 246778899999999999988655555
No 99
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=87.36 E-value=37 Score=34.81 Aligned_cols=164 Identities=22% Similarity=0.301 Sum_probs=103.8
Q ss_pred hhhhHHHHHHhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhh-HHHHH
Q 012393 185 RAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWD-METLI 263 (464)
Q Consensus 185 RAe~AEskc~lLteTN~ELneEL~~Lks~~s~~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~mL~stikD-ME~vI 263 (464)
+.+.--..+..+.+-|..|.+.|..|-++-. -+=.-+++.++--+.++|-+.|-.+.....-.+-.....- -+.++
T Consensus 122 ~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye---~rE~~~~~~~k~keLE~Ql~~AKl~q~~~~~~~e~~k~~~~~~~~l 198 (309)
T PF09728_consen 122 QMEEQSERNIKLREENEELREKLKSLIEQYE---LREEHFEKLLKQKELEVQLAEAKLEQQQEEAEQEKEKAKQEKEILL 198 (309)
T ss_pred HHHhccchhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3334444555688889999999998887722 1222334444333333332222211111100000011111 11233
Q ss_pred HHHHhhhhhhhhhhhhhhhhhhhhhccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHhhHHHHHHHhHHHHHH-------
Q 012393 264 EDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEM------- 336 (464)
Q Consensus 264 eDLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrskl~~LE~sL~~A~~~K~~TakdI~~~tK~i~dL------- 336 (464)
++.. +|..++++-..|...|+.|-.|.+..+..|...|..=..-=+|+.--+|-|..|
T Consensus 199 ~~~~---------------~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~ 263 (309)
T PF09728_consen 199 EEAA---------------QVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTW 263 (309)
T ss_pred HHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333 588999999999999999999999999999999987777777777766666654
Q ss_pred ----------HHHHHHHHHHHHHHHHHhhhhhhHHHHHHh
Q 012393 337 ----------VMQLATQRELIQKQVYSLTSENKLLVEKLQ 366 (464)
Q Consensus 337 ----------V~qLa~ERErL~~Qissl~~eNkiL~~k~k 366 (464)
+..++.||..+..++..+.+...-|-.=|+
T Consensus 264 k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~LcR 303 (309)
T PF09728_consen 264 KSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEKLCR 303 (309)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888888877766665
No 100
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.78 E-value=73 Score=37.55 Aligned_cols=78 Identities=18% Similarity=0.277 Sum_probs=47.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHHH
Q 012393 128 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEI 207 (464)
Q Consensus 128 SE~~sL~eKV~sLEeQLkese~Ql~~akas~Ea~~~~isdmEnvIedLK~kVskAESRAe~AEskc~lLteTN~ELneEL 207 (464)
-|..+|.+|++.|+..|-+....+..++-..+..-...-.|-..|..|+..|-+ .-.+...|+-.-.+|+..|
T Consensus 444 ~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE-------~q~kl~~l~~Ekq~l~~ql 516 (1118)
T KOG1029|consen 444 QELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKE-------LQEKLQKLAPEKQELNHQL 516 (1118)
T ss_pred HHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHH-------HHHHHHhhhhHHHHHHHHH
Confidence 456689999999999999999999888877766444444444444444433322 2234444555555555555
Q ss_pred hhhhc
Q 012393 208 NFLKG 212 (464)
Q Consensus 208 ~~Lks 212 (464)
..-.+
T Consensus 517 kq~q~ 521 (1118)
T KOG1029|consen 517 KQKQS 521 (1118)
T ss_pred HHhhh
Confidence 44443
No 101
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=86.33 E-value=0.34 Score=53.65 Aligned_cols=51 Identities=18% Similarity=0.269 Sum_probs=0.0
Q ss_pred HHHHhhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhhhhhhhhhh
Q 012393 253 YSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRD 303 (464)
Q Consensus 253 ~stikDME~vIeDLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrs 303 (464)
.+.+.-...-|.+|+.+......+++.++-.+.-|.+.+..|..|-..+..
T Consensus 362 ~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~ 412 (713)
T PF05622_consen 362 KSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQE 412 (713)
T ss_dssp ---------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455557788888888888888888888888888887766555444433
No 102
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=85.80 E-value=44 Score=34.08 Aligned_cols=142 Identities=18% Similarity=0.240 Sum_probs=70.3
Q ss_pred hhhHHHHHhHHHHHHHHHHHHHhhcchHHHHhhhhHHHhhhhhHHhhhccccccchhHHHHHHHhHHHHHhhhhHHHHHh
Q 012393 43 HHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKL 122 (464)
Q Consensus 43 ~~~eqE~~~lEEaa~~~~eR~~EAENasEvL~G~Skel~gkLq~~Qf~L~as~~REseLksKLk~s~EQLe~k~~~Lekl 122 (464)
+.....+.+--=.|...|=-|= ...+.|+-..|..++..++.|.........-+..-+.........-...+..|
T Consensus 122 ~q~~~vK~~aRl~aK~~WYeWR-----~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L 196 (325)
T PF08317_consen 122 NQFQLVKTYARLEAKKMWYEWR-----MQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENL 196 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555566666777777775 67888888888888888888877665555444333333332222222222222
Q ss_pred hhcC-chhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHH
Q 012393 123 ESTK-NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAE 190 (464)
Q Consensus 123 ~~s~-~SE~~sL~eKV~sLEeQLkese~Ql~~akas~Ea~~~~isdmEnvIedLK~kVskAESRAe~AE 190 (464)
.... .++. -=.+++..+-..|.+.+.++..-+......+.++.....-|++++.+..+..+....++
T Consensus 197 k~~~~e~~~-~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 197 KQLVEEIES-CDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAE 264 (325)
T ss_pred HHHHhhhhh-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2210 0000 00123333333344444444444444444444444455555555555555544444444
No 103
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=85.70 E-value=0.24 Score=54.81 Aligned_cols=148 Identities=24% Similarity=0.262 Sum_probs=0.0
Q ss_pred HHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHH---HHhhHHHHHHHh
Q 012393 162 QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILEN---QLRDLEIQLQQA 238 (464)
Q Consensus 162 ~~~isdmEnvIedLK~kVskAESRAe~AEskc~lLteTN~ELneEL~~Lks~~s~~~ek~~~LE~---qLkese~QLqhA 238 (464)
..++-..+.-|.+|+.+......|++..+-++..|.+.+..|..+-..|.... ..|.. .|+.+..+-...
T Consensus 362 ~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~e~-------~~L~e~~eeL~~~~~~~~~l 434 (713)
T PF05622_consen 362 KSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQEER-------DSLRETNEELECSQAQQEQL 434 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhhcccccccc
Confidence 34555666677777777777777777777778877777777666544443321 11111 111111110000
Q ss_pred -------Hhhhhhh-HHHH-HhHHHHHhhHHHHHHHHHh--------hhhhhhhhhhhhhhhhhhhhccchhhhhhhhhh
Q 012393 239 -------KVSSEAS-QEQQ-SMLYSAIWDMETLIEDLKS--------KVSKAESKTESVEEQCIVLSEDNFELKNKQSFM 301 (464)
Q Consensus 239 -------~As~eAs-~eqQ-~mL~stikDME~vIeDLks--------Kv~kaE~rae~~E~kc~~LsEtN~eLneELsfl 301 (464)
-.+.+.- .+-+ .-+...|-.+++=-+-|+. ++.......+.+...+.-|.+.|...++.+..+
T Consensus 435 ~~~~~~~~~~~~~l~~El~~~~l~erl~rLe~ENk~Lk~~~e~~~~e~~~~L~~~Leda~~~~~~Le~~~~~~~~~~~~l 514 (713)
T PF05622_consen 435 SQSGEESSSSGDNLSAELNPAELRERLLRLEHENKRLKEKQEESEEEKLEELQSQLEDANRRKEKLEEENREANEKILEL 514 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccchhhhccchHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000 0100 0122233334422223322 223344455566666777888888888888888
Q ss_pred hhHHHHHHHhhHHHH
Q 012393 302 RDKIKILESSLNRAN 316 (464)
Q Consensus 302 rskl~~LE~sL~~A~ 316 (464)
++.++.+...|....
T Consensus 515 q~qle~lq~~l~~~~ 529 (713)
T PF05622_consen 515 QSQLEELQKSLQEQG 529 (713)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHHh
Confidence 888888888775543
No 104
>PRK11281 hypothetical protein; Provisional
Probab=85.63 E-value=76 Score=38.23 Aligned_cols=49 Identities=24% Similarity=0.194 Sum_probs=32.3
Q ss_pred HhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHH
Q 012393 194 TQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQ 249 (464)
Q Consensus 194 ~lLteTN~ELneEL~~Lks~~s~~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ 249 (464)
..+.+.|.+|..+|..+-. +.+.+-.+-.....+++....+-.+.+||=
T Consensus 281 ~~~~~~N~~Ls~~L~~~t~-------~~~~l~~~~~~~~~~l~~~~q~~~~i~eqi 329 (1113)
T PRK11281 281 AQELEINLQLSQRLLKATE-------KLNTLTQQNLRVKNWLDRLTQSERNIKEQI 329 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355678888887776544 577777777777777777766655555543
No 105
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=85.53 E-value=79 Score=36.74 Aligned_cols=26 Identities=35% Similarity=0.446 Sum_probs=16.5
Q ss_pred HHHHHhhHHHHHHHHHhhhhhhhhhh
Q 012393 252 LYSAIWDMETLIEDLKSKVSKAESKT 277 (464)
Q Consensus 252 L~stikDME~vIeDLksKv~kaE~ra 277 (464)
+.+.+.|.+.=++.|..|+...|.+.
T Consensus 664 le~~~~~~e~E~~~l~~Ki~~Le~El 689 (769)
T PF05911_consen 664 LETRLKDLEAEAEELQSKISSLEEEL 689 (769)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666777777777666553
No 106
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=85.22 E-value=78 Score=38.17 Aligned_cols=62 Identities=18% Similarity=0.223 Sum_probs=37.1
Q ss_pred HHHHhHHHHHhhHHHHHHHHHhhhhh-----hhhhhhhhh---hhhh-------hhhccchhhhhhhhhhhhHHHHH
Q 012393 247 EQQSMLYSAIWDMETLIEDLKSKVSK-----AESKTESVE---EQCI-------VLSEDNFELKNKQSFMRDKIKIL 308 (464)
Q Consensus 247 eqQ~mL~stikDME~vIeDLksKv~k-----aE~rae~~E---~kc~-------~LsEtN~eLneELsflrskl~~L 308 (464)
.|+..+...+...+.-|+.|++.+.. +|..++.++ ++.. -+.+.|.+|+++|.-.-.|++.+
T Consensus 208 ~q~dl~~~~~~~l~~~~~~Lq~~in~kR~~~se~~~~~~~~~~~~~~~~~~~i~~~~~~N~~Ls~~L~~~t~~~n~l 284 (1109)
T PRK10929 208 LRSELAKKRSQQLDAYLQALRNQLNSQRQREAERALESTELLAEQSGDLPKSIVAQFKINRELSQALNQQAQRMDLI 284 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555777777777777766543 122222222 2332 23367899988888888887766
No 107
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=82.66 E-value=45 Score=35.07 Aligned_cols=47 Identities=17% Similarity=0.226 Sum_probs=23.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHh
Q 012393 128 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYG 181 (464)
Q Consensus 128 SE~~sL~eKV~sLEeQLkese~Ql~~akas~Ea~~~~isdmEnvIedLK~kVsk 181 (464)
+....+..++..|+.++.+...... ...-.+-++..-|..++..+.+
T Consensus 247 ~~~~~l~~~l~~l~~~l~~l~~~y~-------~~hP~v~~l~~qi~~l~~~l~~ 293 (498)
T TIGR03007 247 VANSELDGRIEALEKQLDALRLRYT-------DKHPDVIATKREIAQLEEQKEE 293 (498)
T ss_pred cCCCchHHHHHHHHHHHHHHHHHhc-------ccChHHHHHHHHHHHHHHHHHh
Confidence 3445666666666666665443322 2223444444445555555433
No 108
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=82.21 E-value=17 Score=39.75 Aligned_cols=75 Identities=23% Similarity=0.217 Sum_probs=60.0
Q ss_pred HHHhHHHHHhhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHhhHHHHH
Q 012393 248 QQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVN 327 (464)
Q Consensus 248 qQ~mL~stikDME~vIeDLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrskl~~LE~sL~~A~~~K~~TakdI~ 327 (464)
.|+-+.+.-+-||.-...++.|+.+-.++ --.+.|.|..|.+.+...+++++.++..+..+...|+....|+.
T Consensus 369 ~~~~~e~~kk~~e~k~~q~q~k~~k~~ke-------l~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLq 441 (493)
T KOG0804|consen 369 ESSDLEAEKKIVERKLQQLQTKLKKCQKE-------LKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQ 441 (493)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666666777777888888777766 44455999999999999999999999999999999988877776
Q ss_pred HH
Q 012393 328 HR 329 (464)
Q Consensus 328 ~~ 329 (464)
-+
T Consensus 442 EQ 443 (493)
T KOG0804|consen 442 EQ 443 (493)
T ss_pred HH
Confidence 55
No 109
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=80.44 E-value=64 Score=31.99 Aligned_cols=143 Identities=20% Similarity=0.245 Sum_probs=87.5
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhh------------hhhhHHHHHH
Q 012393 127 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAES------------RAESAEEKVT 194 (464)
Q Consensus 127 ~SE~~sL~eKV~sLEeQLkese~Ql~~akas~Ea~~~~isdmEnvIedLK~kVskAES------------RAe~AEskc~ 194 (464)
||+ -.|.-.+...+..|.+....+..+.+..-..+-++..+...++++..+.-.|=. +..+.+..|.
T Consensus 24 Dp~-~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~ 102 (225)
T COG1842 24 DPE-KMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAK 102 (225)
T ss_pred CHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 566 566666777777777766666666666666666777777777777777655533 3344455556
Q ss_pred hhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHH--HH--hhHHHHHHHHHhhh
Q 012393 195 QLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYS--AI--WDMETLIEDLKSKV 270 (464)
Q Consensus 195 lLteTN~ELneEL~~Lks~~s~~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~mL~s--ti--kDME~vIeDLksKv 270 (464)
.+-....++.+-+.-||.+ +..||.++.++..+.+..+|..-+-+-++.|-.+ .+ .+=....+....|+
T Consensus 103 ~~~~~~~~~~~~~~~l~~~-------~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v~~~~~~~s~~sa~~~fer~e~ki 175 (225)
T COG1842 103 ALEAELQQAEEQVEKLKKQ-------LAALEQKIAELRAKKEALKARKAAAKAQEKVNRSLGGGSSSSAMAAFERMEEKI 175 (225)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 6666666666666666664 7778888888777777776555444443332221 11 12234455566666
Q ss_pred hhhhhhh
Q 012393 271 SKAESKT 277 (464)
Q Consensus 271 ~kaE~ra 277 (464)
...|.++
T Consensus 176 ee~ea~a 182 (225)
T COG1842 176 EEREARA 182 (225)
T ss_pred HHHHHHH
Confidence 6666553
No 110
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=79.90 E-value=7.4 Score=34.49 Aligned_cols=85 Identities=24% Similarity=0.253 Sum_probs=50.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH---HHHHhhcCCCCCceecccCCCCCccccccCCCCCCCcccc
Q 012393 325 EVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLL---VEKLQYSGKSSSATMYNAGDTDDKELLINPTNNLAGATVK 401 (464)
Q Consensus 325 dI~~~tK~i~dLV~qLa~ERErL~~Qissl~~eNkiL---~~k~k~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 401 (464)
+|--+-.-++.=+.++..+.+.|+.+|..|.+||.-| |.+++..-... +. .. -.+....+...++
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~--------~~---~~-~~~~~~~~~~~~~ 72 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEEL--------EQ---EE-EEKEEKKTKKKLG 72 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hc---cc-ccccccccccccc
Confidence 4444555566667788899999999999999998887 56665420000 00 00 0011111222233
Q ss_pred chhhhhhHHhhhhhcccccceeee
Q 012393 402 TSEDAVSLMKSVQAGTHLNICRIY 425 (464)
Q Consensus 402 t~~~~~~~~~~~~~~~~~~~~~~~ 425 (464)
.+. -.|.+=-++|.| ||..|
T Consensus 73 ~g~--~NL~~LY~EGFH--ICn~~ 92 (107)
T PF06156_consen 73 EGR--DNLARLYQEGFH--ICNVH 92 (107)
T ss_pred chH--HHHHHHHhcCee--eCcHH
Confidence 333 367777889999 78765
No 111
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=78.99 E-value=47 Score=29.65 Aligned_cols=75 Identities=20% Similarity=0.283 Sum_probs=60.0
Q ss_pred chhhhhhhhhhhhHHHHHHHhhHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 012393 291 NFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKL 365 (464)
Q Consensus 291 N~eLneELsflrskl~~LE~sL~~A~~~K~~TakdI~~~tK~i~dLV~qLa~ERErL~~Qissl~~eNkiL~~k~ 365 (464)
+....+.|.-+|..+..++..+......-......+.....-...--..|-.|..-+...+..|..-|++|-..+
T Consensus 54 Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~Ql 128 (132)
T PF07926_consen 54 HAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQL 128 (132)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567778888888888888887777777777777777777777778888888889999999999999997665
No 112
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=78.83 E-value=32 Score=33.18 Aligned_cols=111 Identities=20% Similarity=0.238 Sum_probs=79.6
Q ss_pred HHHhhhhhHHhhhccccccchhHHHHHHHhHHHHHhhhhHHHHHhhhcCchhhhhHHHHHHHHHHHHHHHHHHHhhhhhc
Q 012393 78 KEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANAC 157 (464)
Q Consensus 78 kel~gkLq~~Qf~L~as~~REseLksKLk~s~EQLe~k~~~Lekl~~s~~SE~~sL~eKV~sLEeQLkese~Ql~~akas 157 (464)
.....-|+.-=||......|=..|.+--.+...-++.++..=+++... ..|...+.+++..||..+.+++.+.+..+..
T Consensus 75 ~~tl~~LE~~GFnV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~-~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ 153 (190)
T PF05266_consen 75 MKTLSELEEHGFNVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEK-EAELKELESEIKELEMKILELQRQAAKLKEK 153 (190)
T ss_pred HHHHHHHHHcCCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555666666666666665555555544444444443333333332 4566788889999999999999998888888
Q ss_pred hhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhH
Q 012393 158 FQTSQEQLNEMDNFIESLKESLYGAESRAESA 189 (464)
Q Consensus 158 ~Ea~~~~isdmEnvIedLK~kVskAESRAe~A 189 (464)
.++...+++.|+.-++.+++.+.++|.+-++.
T Consensus 154 ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~~ 185 (190)
T PF05266_consen 154 KEAKDKEISRLKSEAEALKEEIENAELEFQSV 185 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888999999999999999999999886654
No 113
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=78.74 E-value=1.4e+02 Score=34.80 Aligned_cols=158 Identities=15% Similarity=0.192 Sum_probs=89.7
Q ss_pred HHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhh
Q 012393 162 QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVS 241 (464)
Q Consensus 162 ~~~isdmEnvIedLK~kVskAESRAe~AEskc~lLteTN~ELneEL~~Lks~~s~~~ek~~~LE~qLkese~QLqhA~As 241 (464)
..+.++|-.-...+...+....-+.+..--...-|-+||.+|..+|+++|... -.|..-++..|..++.-..+
T Consensus 505 aQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel---~~k~~Ev~~kl~ksEen~r~---- 577 (786)
T PF05483_consen 505 AQETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEEL---KQKGEEVKCKLDKSEENARS---- 577 (786)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhHHHhhHH----
Confidence 34566777777778888888888888888888899999999999999999862 24455566666655432211
Q ss_pred hhhhHHHHHhHHHHHhhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhhhhhhhhhhHHHHHHHhhHHHHHH---
Q 012393 242 SEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIE--- 318 (464)
Q Consensus 242 ~eAs~eqQ~mL~stikDME~vIeDLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrskl~~LE~sL~~A~~~--- 318 (464)
.+--.. .....|+.+++-+.-|+..|.--.+..+.+...--.|-..-..-+.-+++|..+++.|+.-+..+..-
T Consensus 578 ~e~e~~---~k~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE 654 (786)
T PF05483_consen 578 IECEIL---KKEKQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHEE 654 (786)
T ss_pred HHHHHh---hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 111111 12223344444444444433322222222222222222222333455678888888887777666542
Q ss_pred -HHhhHHHHHHH
Q 012393 319 -KAASAKEVNHR 329 (464)
Q Consensus 319 -K~~TakdI~~~ 329 (464)
=...-+||..+
T Consensus 655 ~~~~~~keie~K 666 (786)
T PF05483_consen 655 ETDKYQKEIESK 666 (786)
T ss_pred HHHHHHHHHHHh
Confidence 23344566544
No 114
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=78.12 E-value=19 Score=33.92 Aligned_cols=113 Identities=19% Similarity=0.266 Sum_probs=37.8
Q ss_pred HHHhhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHhhHHHHHHHhHHH
Q 012393 254 SAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLM 333 (464)
Q Consensus 254 stikDME~vIeDLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrskl~~LE~sL~~A~~~K~~TakdI~~~tK~i 333 (464)
..+.+++..+-.|+.-+..+-..-.....+.+.++..+-+|..++.-...++..|+..+......=..-..+|.-+.+.+
T Consensus 67 ~~~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~ 146 (194)
T PF08614_consen 67 AQISSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKAN 146 (194)
T ss_dssp -----------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666555555555445555666677777777667766666766666655554444333344444444444
Q ss_pred HHH---HHHHHHHHHHHHHHHHHhhhhhhHHHHHHh
Q 012393 334 MEM---VMQLATQRELIQKQVYSLTSENKLLVEKLQ 366 (464)
Q Consensus 334 ~dL---V~qLa~ERErL~~Qissl~~eNkiL~~k~k 366 (464)
..+ ..-|-.+-.-+..++..|-+||+-|++.+-
T Consensus 147 e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm 182 (194)
T PF08614_consen 147 EILQDELQALQLQLNMLEEKLRKLEEENRELVERWM 182 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 333444555555667778888888887653
No 115
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=77.97 E-value=1.6e+02 Score=35.13 Aligned_cols=83 Identities=13% Similarity=0.196 Sum_probs=48.0
Q ss_pred hHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhhhhhhhhhhHHHHHHHhhHHHHHH---HHhhHHHHHHH-hHHH
Q 012393 258 DMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIE---KAASAKEVNHR-TKLM 333 (464)
Q Consensus 258 DME~vIeDLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrskl~~LE~sL~~A~~~---K~~TakdI~~~-tK~i 333 (464)
||+..+..|-.++.+.-...+.++-|.-...+.=-.|..|+.-+-.+++.|+..+.--.+. +.+--.|.... -+.+
T Consensus 463 ~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~ 542 (980)
T KOG0980|consen 463 DVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRLA 542 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 6666666665555555444445555555555555678888888888888887764433333 23333333333 4455
Q ss_pred HHHHHHH
Q 012393 334 MEMVMQL 340 (464)
Q Consensus 334 ~dLV~qL 340 (464)
..+|.++
T Consensus 543 ~~~~~~~ 549 (980)
T KOG0980|consen 543 AELVARE 549 (980)
T ss_pred HHHHHHH
Confidence 5566555
No 116
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=77.85 E-value=81 Score=31.68 Aligned_cols=42 Identities=12% Similarity=-0.069 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhcCCCCCceecc
Q 012393 337 VMQLATQRELIQKQVYSLTSENKLLVEKLQYSGKSSSATMYN 378 (464)
Q Consensus 337 V~qLa~ERErL~~Qissl~~eNkiL~~k~k~~~~~~~~~~~~ 378 (464)
..+...++..++.++..+...-..+...+..+.+.+|+.|+-
T Consensus 241 ~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~i~AP~dG~V 282 (423)
T TIGR01843 241 REEVLEELTEAQARLAELRERLNKARDRLQRLIIRSPVDGTV 282 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcEEECCCCcEE
Confidence 344455566777777777777777777788888888887754
No 117
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=77.28 E-value=1.5e+02 Score=34.53 Aligned_cols=74 Identities=23% Similarity=0.361 Sum_probs=38.5
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhh
Q 012393 127 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTN 200 (464)
Q Consensus 127 ~SE~~sL~eKV~sLEeQLkese~Ql~~akas~Ea~~~~isdmEnvIedLK~kVskAESRAe~AEskc~lLteTN 200 (464)
.+....+.+++..++..-.+.+..+..+.-..+..+.++..+|..|.+|+.++.-+......++....-..+.|
T Consensus 588 ~~~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~ 661 (769)
T PF05911_consen 588 TSEKKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESY 661 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666655555555555555555555555555555555555555544444444444443333333
No 118
>PRK10884 SH3 domain-containing protein; Provisional
Probab=76.85 E-value=17 Score=35.36 Aligned_cols=79 Identities=22% Similarity=0.329 Sum_probs=49.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHHH
Q 012393 128 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEI 207 (464)
Q Consensus 128 SE~~sL~eKV~sLEeQLkese~Ql~~akas~Ea~~~~isdmEnvIedLK~kVskAESRAe~AEskc~lLteTN~ELneEL 207 (464)
+.-+++.+.+..||.|+.+...++.++..+.. +..++|...+.+.+.. ...|-+.|.+|+++|
T Consensus 86 s~~p~~~~rlp~le~el~~l~~~l~~~~~~~~---~~~~~l~~~~~~~~~~--------------~~~L~~~n~~L~~~l 148 (206)
T PRK10884 86 STTPSLRTRVPDLENQVKTLTDKLNNIDNTWN---QRTAEMQQKVAQSDSV--------------INGLKEENQKLKNQL 148 (206)
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHH
Confidence 44567888999999999999988888776532 3333333333332222 222777777777777
Q ss_pred hhhhcCCCCcchhhhhhHHHHhh
Q 012393 208 NFLKGNNDSNTKKVGILENQLRD 230 (464)
Q Consensus 208 ~~Lks~~s~~~ek~~~LE~qLke 230 (464)
..++.. +..|+.++..
T Consensus 149 ~~~~~~-------~~~l~~~~~~ 164 (206)
T PRK10884 149 IVAQKK-------VDAANLQLDD 164 (206)
T ss_pred HHHHHH-------HHHHHHHHHH
Confidence 777663 5555555543
No 119
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=76.77 E-value=1.3e+02 Score=33.63 Aligned_cols=43 Identities=12% Similarity=-0.093 Sum_probs=28.2
Q ss_pred hHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHhhcchHHHHhhh
Q 012393 34 NEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGI 76 (464)
Q Consensus 34 ~eeeLk~kL~~~eqE~~~lEEaa~~~~eR~~EAENasEvL~G~ 76 (464)
++..+..+......-..||++-...+..++-+||...+-++-.
T Consensus 181 ~~~~~~~k~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~ 223 (754)
T TIGR01005 181 IAGQGAAKSESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQ 223 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666777777777777777777777666543
No 120
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=76.37 E-value=18 Score=38.66 Aligned_cols=53 Identities=34% Similarity=0.413 Sum_probs=43.7
Q ss_pred hhhhhhHHHHhhHHHHHHH--------hHhhhhhhHHHHHhHHHHHhhHHHHHHHHHhhhhhhh
Q 012393 219 KKVGILENQLRDLEIQLQQ--------AKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAE 274 (464)
Q Consensus 219 ek~~~LE~qLkese~QLqh--------A~As~eAs~eqQ~mL~stikDME~vIeDLksKv~kaE 274 (464)
.|...||.|+.++ +||++ .-|+.+....=|+ |...+|+..+||-.+++++|.|
T Consensus 258 ~R~erLEeqlNd~-~elHq~Ei~~LKqeLa~~EEK~~Yqs--~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 258 YRYERLEEQLNDL-TELHQNEIYNLKQELASMEEKMAYQS--YERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHH
Confidence 4677888888876 55544 4488888888788 8999999999999999999988
No 121
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=76.36 E-value=1.2e+02 Score=34.04 Aligned_cols=26 Identities=12% Similarity=0.226 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhchhh
Q 012393 135 EKVKSLEEQLKESEIRLQNANACFQT 160 (464)
Q Consensus 135 eKV~sLEeQLkese~Ql~~akas~Ea 160 (464)
.++..|+.|+.....+...+.+..+.
T Consensus 237 ~~L~~l~~ql~~a~~~~~~a~a~~~~ 262 (754)
T TIGR01005 237 QQLAELNTELSRARANRAAAEGTADS 262 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666665555555444433
No 122
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=75.03 E-value=2e+02 Score=34.87 Aligned_cols=205 Identities=21% Similarity=0.199 Sum_probs=0.0
Q ss_pred hHHHHHhhhhHHHHHhhhcCchhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhh
Q 012393 107 DFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRA 186 (464)
Q Consensus 107 ~s~EQLe~k~~~Lekl~~s~~SE~~sL~eKV~sLEeQLkese~Ql~~akas~Ea~~~~isdmEnvIedLK~kVskAESRA 186 (464)
++.|.+-.|...+++.|. .|+-|+..||+.+.....|++....-..-.+.+...|.-.+...-.....-
T Consensus 394 ss~Ee~~SK~leleke~K-------nLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq---- 462 (1195)
T KOG4643|consen 394 SSYEELISKHLELEKEHK-------NLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQ---- 462 (1195)
T ss_pred hhHHHHHHHHHHHHHHhH-------hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----
Q ss_pred hhHHHHHHhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHH
Q 012393 187 ESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDL 266 (464)
Q Consensus 187 e~AEskc~lLteTN~ELneEL~~Lks~~s~~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~mL~stikDME~vIeDL 266 (464)
..++++++-+-+. ..-++...-+.-.+.+.-.-+...+...++-|.+.+.-+..=+...
T Consensus 463 --------------~~e~e~~~q~ls~-------~~Q~~~et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~ 521 (1195)
T KOG4643|consen 463 --------------SLENEELDQLLSL-------QDQLEAETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTC 521 (1195)
T ss_pred --------------HHHhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhhhhhhhhhhhhhhhhhhhhccchhhhhhhhhhhhHHHHH-HHhhHHHHHHHHhhHHHHHHH--hHHHHHHHHHHHHH
Q 012393 267 KSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKIL-ESSLNRANIEKAASAKEVNHR--TKLMMEMVMQLATQ 343 (464)
Q Consensus 267 ksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrskl~~L-E~sL~~A~~~K~~TakdI~~~--tK~i~dLV~qLa~E 343 (464)
...+-+.-.+++.++.--+.|-+.|.-| -+++-.| +++...+.-++.-.-+|.--+ .+.|..|+ -|-..
T Consensus 522 ~~qye~~~~k~eeLe~~l~~lE~ENa~L-------lkqI~~Lk~t~qn~~~LEq~~n~lE~~~~elkk~idaL~-alrrh 593 (1195)
T KOG4643|consen 522 DIQYELLSNKLEELEELLGNLEEENAHL-------LKQIQSLKTTSQNGALLEQNNNDLELIHNELKKYIDALN-ALRRH 593 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHH-------HHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHH-HHHHH
Q ss_pred HHHHHHHH
Q 012393 344 RELIQKQV 351 (464)
Q Consensus 344 RErL~~Qi 351 (464)
++.|-.+|
T Consensus 594 ke~LE~e~ 601 (1195)
T KOG4643|consen 594 KEKLEEEI 601 (1195)
T ss_pred HHHHHHHH
No 123
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=74.59 E-value=32 Score=39.26 Aligned_cols=73 Identities=21% Similarity=0.314 Sum_probs=51.2
Q ss_pred hhhhhhhccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHhhHHHHH--------------HHhHHHHHHHHHHHHHHHHH
Q 012393 282 EQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVN--------------HRTKLMMEMVMQLATQRELI 347 (464)
Q Consensus 282 ~kc~~LsEtN~eLneELsflrskl~~LE~sL~~A~~~K~~TakdI~--------------~~tK~i~dLV~qLa~ERErL 347 (464)
.+--.||+...+..+||.-++.++..|.+++.++......-...+. .+.+.|.+...|.+.+-.++
T Consensus 625 ~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~~~~~~~~~s~~L~~~Q~~~I~~iL~~~~~~I~~~ 704 (717)
T PF10168_consen 625 SQLPVLSEAEREFKKELERMKDQLQDLKASIEQLKKKLDYQQRQIESQKSPKKKSIVLSESQKRTIKEILKQQGEEIDEL 704 (717)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3445688888899999999999999999998887654433222222 22467788888888777777
Q ss_pred HHHHHHh
Q 012393 348 QKQVYSL 354 (464)
Q Consensus 348 ~~Qissl 354 (464)
-++|..+
T Consensus 705 v~~ik~i 711 (717)
T PF10168_consen 705 VKQIKNI 711 (717)
T ss_pred HHHHHHH
Confidence 7666554
No 124
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=74.12 E-value=2.1e+02 Score=34.70 Aligned_cols=117 Identities=23% Similarity=0.278 Sum_probs=61.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHh-----hhhhhhhHHH---H-------H
Q 012393 129 EVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYG-----AESRAESAEE---K-------V 193 (464)
Q Consensus 129 E~~sL~eKV~sLEeQLkese~Ql~~akas~Ea~~~~isdmEnvIedLK~kVsk-----AESRAe~AEs---k-------c 193 (464)
|...+.-++.-+|..+....-+..-+....+-...++...+.-+..|...+.. ||..++.|+. + .
T Consensus 181 e~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~kR~~~se~~~~~~~~~~~~~~~~~~~i 260 (1109)
T PRK10929 181 ESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQRQREAERALESTELLAEQSGDLPKSI 260 (1109)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccCChHH
Confidence 33334444444444444333332222233233333455555555555555443 2223333321 1 2
Q ss_pred HhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhH
Q 012393 194 TQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSML 252 (464)
Q Consensus 194 ~lLteTN~ELneEL~~Lks~~s~~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~mL 252 (464)
..+.+.|.+|..+|...-. +.+.|-.+-.....|++....+-.+.+||=+.|
T Consensus 261 ~~~~~~N~~Ls~~L~~~t~-------~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi~~l 312 (1109)
T PRK10929 261 VAQFKINRELSQALNQQAQ-------RMDLIASQQRQAASQTLQVRQALNTLREQSQWL 312 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344678888888876544 577777777777777777777666666654433
No 125
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=73.68 E-value=16 Score=34.41 Aligned_cols=114 Identities=23% Similarity=0.283 Sum_probs=45.3
Q ss_pred hhhhhHHhhhccccccchhHHHHHHHhHHHHHhhhhHHHHHhhhcCchhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhh
Q 012393 81 LGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQT 160 (464)
Q Consensus 81 ~gkLq~~Qf~L~as~~REseLksKLk~s~EQLe~k~~~Lekl~~s~~SE~~sL~eKV~sLEeQLkese~Ql~~akas~Ea 160 (464)
-.++-..+-+|..+-++=+++-.+|-....++. .+..++...+..|++....+.........
T Consensus 73 e~~~~~l~~ELael~r~~~el~~~L~~~~~~l~------------------~l~~~~~~~~~~l~~l~~~~~~L~~~~~~ 134 (194)
T PF08614_consen 73 EQKLAKLQEELAELYRSKGELAQQLVELNDELQ------------------ELEKELSEKERRLAELEAELAQLEEKIKD 134 (194)
T ss_dssp -----------------------------------------------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccc------------------hhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555544444433333 33333333333344443333333333333
Q ss_pred hHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHHHhhhhc
Q 012393 161 SQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKG 212 (464)
Q Consensus 161 ~~~~isdmEnvIedLK~kVskAESRAe~AEskc~lLteTN~ELneEL~~Lks 212 (464)
....+..+...|+.|++.+.--.-....+|.++.-|..-|.+|-+-+=..++
T Consensus 135 l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k~ 186 (194)
T PF08614_consen 135 LEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQRKA 186 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666777778888877777777788888888888888887665544443
No 126
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=73.67 E-value=1.6e+02 Score=33.19 Aligned_cols=223 Identities=22% Similarity=0.291 Sum_probs=126.5
Q ss_pred HhhcchHHHHhhhhHHHhhhhhHHhhhccccccchhHHHHHHHhHHHHHhhhhHHHHHhhhcCchhhhhHHHHHHHHHHH
Q 012393 64 LEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQ 143 (464)
Q Consensus 64 ~EAENasEvL~G~Skel~gkLq~~Qf~L~as~~REseLksKLk~s~EQLe~k~~~Lekl~~s~~SE~~sL~eKV~sLEeQ 143 (464)
.+|++-...|..+-...=+=+-.+|-+|-|.. .+|+.--..+...+=-|.... -|+++..|.+++.-...+
T Consensus 200 ~~~ee~~~~L~~~~e~IP~L~~e~~~~lP~ql-------~~Lk~Gyr~m~~~gY~l~~~~--id~~~~~L~~~l~~~~~~ 270 (570)
T COG4477 200 EEAEEHMIALRSIMERIPSLLAELQTELPGQL-------QDLKAGYRDMKEEGYHLEHVN--IDSRLERLKEQLVENSEL 270 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchHHH-------HHHHHHHHHHHHccCCccccc--HHHHHHHHHHHHHHHHhH
Confidence 33444444444444444444455555555432 344444444444443333322 257777777777766666
Q ss_pred HHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHHHhhhhcC---CCCcchh
Q 012393 144 LKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGN---NDSNTKK 220 (464)
Q Consensus 144 Lkese~Ql~~akas~Ea~~~~isdmEnvIedLK~kVskAESRAe~AEskc~lLteTN~ELneEL~~Lks~---~s~~~ek 220 (464)
+...++ ..|.+...-.+++|.+|=.+++-==+.--..+.+...--....-.-+-|-.|++|+..++-. +.++.-.
T Consensus 271 l~~Lel--d~aeeel~~I~e~ie~lYd~lE~EveA~~~V~~~~~~l~~~l~k~ke~n~~L~~Eie~V~~sY~l~e~e~~~ 348 (570)
T COG4477 271 LTQLEL--DEAEEELGLIQEKIESLYDLLEREVEAKNVVEENLPILPDYLEKAKENNEHLKEEIERVKESYRLAETELGS 348 (570)
T ss_pred HHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHH
Confidence 554443 55666666677777766655554333333444445555555566667788899998888866 2113345
Q ss_pred hhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHH----HHhhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhhh
Q 012393 221 VGILENQLRDLEIQLQQAKVSSEASQEQQSMLYS----AIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKN 296 (464)
Q Consensus 221 ~~~LE~qLkese~QLqhA~As~eAs~eqQ~mL~s----tikDME~vIeDLksKv~kaE~rae~~E~kc~~LsEtN~eLne 296 (464)
+..+++.|++.+.+++.-.+-.++ |.+=|| ++.+++.-+++.+++--+.... .+.|-+.-++-.+
T Consensus 349 vr~~e~eL~el~~~~~~i~~~~~~----~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~-------L~~LrkdEl~Are 417 (570)
T COG4477 349 VRKFEKELKELESVLDEILENIEA----QEVAYSELQDNLEEIEKALTDIEDEQEKVQEH-------LTSLRKDELEARE 417 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc----ccccHHHHHHHHHHHHHHHHHHhhhHHHHHHH-------HHHHHHHHHHHHH
Confidence 778899999887777665544433 444455 4444555555555554444333 5566666666666
Q ss_pred hhhhhhhHHHHH
Q 012393 297 KQSFMRDKIKIL 308 (464)
Q Consensus 297 ELsflrskl~~L 308 (464)
.+.-|++++...
T Consensus 418 ~l~~~~~~l~ei 429 (570)
T COG4477 418 NLERLKSKLHEI 429 (570)
T ss_pred HHHHHHHHHHHH
Confidence 666676665544
No 127
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=73.48 E-value=21 Score=30.62 Aligned_cols=59 Identities=20% Similarity=0.258 Sum_probs=51.7
Q ss_pred hHHHhHHHHhhhHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHhhcchHHHHhhhhHHHh
Q 012393 23 DLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEML 81 (464)
Q Consensus 23 dLEkkL~es~~~eeeLk~kL~~~eqE~~~lEEaa~~~~eR~~EAENasEvL~G~Skel~ 81 (464)
++++...+.+...-.+...++..++.+..++-.-...-.++|+|....+.|..+.+-+.
T Consensus 7 ~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~ 65 (96)
T PF08647_consen 7 SMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLN 65 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 46777888888888889999999999999999999999999999999999988876543
No 128
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=73.09 E-value=2.2e+02 Score=34.49 Aligned_cols=338 Identities=16% Similarity=0.224 Sum_probs=180.4
Q ss_pred HHhhhhHHHhhhhhHHhhhccccccchhHHHHHHHhHHHHHhhhhHHHHHhhhc----C------chhhhhHHHHHHHHH
Q 012393 72 VLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLEST----K------NSEVLTMKEKVKSLE 141 (464)
Q Consensus 72 vL~G~Skel~gkLq~~Qf~L~as~~REseLksKLk~s~EQLe~k~~~Lekl~~s----~------~SE~~sL~eKV~sLE 141 (464)
+.-.+.++..+.|.-++-+-+.+..+=..+.+.+....+....-+..+-.|+.+ . +.+-.....|---||
T Consensus 227 iYdrEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~le 306 (1200)
T KOG0964|consen 227 IYDRELNEINGELERLEEDRSSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLE 306 (1200)
T ss_pred hhhhHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 345678899999999998888888887777777777766655555544444443 0 011111112222233
Q ss_pred HHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHHHhhhhcCCCCcchhh
Q 012393 142 EQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKV 221 (464)
Q Consensus 142 eQLkese~Ql~~akas~Ea~~~~isdmEnvIedLK~kVskAESRAe~AEskc~lLteTN~ELneEL~~Lks~~s~~~ek~ 221 (464)
=++++..-|+.. ..++-+...++...+++++.+-+.....-+-+..-|+++-..++..|..|+.+ +-
T Consensus 307 l~~kdlq~~i~~-------n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~------~~ 373 (1200)
T KOG0964|consen 307 LKIKDLQDQITG-------NEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQK------QR 373 (1200)
T ss_pred hhhHHHHHHhhh-------hhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHH------HH
Confidence 333333332221 11223355666777777777777777777777777888877787777777764 12
Q ss_pred hhhHHHHhhHHHHHHHhHhhhhhhH-HHHHhHHHHHhhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhhhhhhh
Q 012393 222 GILENQLRDLEIQLQQAKVSSEASQ-EQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSF 300 (464)
Q Consensus 222 ~~LE~qLkese~QLqhA~As~eAs~-eqQ~mL~stikDME~vIeDLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsf 300 (464)
.++-+ +-++|-=.++ +....+.+-|.++-..|.|.+.--....+..+.++....-.-+.=-+|+..+..
T Consensus 374 ~l~~K----------qgr~sqFssk~eRDkwir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e 443 (1200)
T KOG0964|consen 374 DLLAK----------QGRYSQFSSKEERDKWIRSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINE 443 (1200)
T ss_pred HHHHh----------hccccccCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh
Confidence 22222 2222222333 456678888888888888888777777777666666555444444556666666
Q ss_pred hhhHHHHHHHhhHHHHHHHHh---hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhh---hhHH-----HHHHhhcC
Q 012393 301 MRDKIKILESSLNRANIEKAA---SAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSE---NKLL-----VEKLQYSG 369 (464)
Q Consensus 301 lrskl~~LE~sL~~A~~~K~~---TakdI~~~tK~i~dLV~qLa~ERErL~~Qissl~~e---NkiL-----~~k~k~~~ 369 (464)
.++|++.+-+........+.+ +-|.+----+.+......+-...+|-+.++-.-+.. |.|- .+.++.+|
T Consensus 444 ~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~L~~~~~r~v~nGi~~v~~I~e~~k~ng 523 (1200)
T KOG0964|consen 444 TKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEKNLRATMNRSVANGIDSVRKIKEELKPNG 523 (1200)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhHHHHHHHHHhcccc
Confidence 677766664444333333322 111211112333333333333444444444333331 2222 12222222
Q ss_pred CCCCceecccCCCCC---ccccccCCCCCCCccccchhhhhhHHh---hhhhc--ccccceeeecCCCCchHH
Q 012393 370 KSSSATMYNAGDTDD---KELLINPTNNLAGATVKTSEDAVSLMK---SVQAG--THLNICRIYTRGLAYPEF 434 (464)
Q Consensus 370 ~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~t~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~ 434 (464)
-.+|+. ..-+-++ +++++...|.+-+--|.|-+=|-.+|+ ..+.| |....-||-+|...||.-
T Consensus 524 v~G~v~--eL~~v~~~f~tavEvtaGNsLF~iVVdndevATkIl~~~n~m~~GrVTF~PLNrl~~r~v~yp~~ 594 (1200)
T KOG0964|consen 524 VFGTVY--ELIKVPNKFKTAVEVTAGNSLFNIVVDNDEVATKILRKLNKMKGGRVTFMPLNRLKARDVEYPKD 594 (1200)
T ss_pred cceehh--hhhcCCHHHHhHHhhhcccceEEEEecccHHHHHHHHHHHhccCCeeEEeecccCchhhccCCCC
Confidence 222211 1111122 244455555555555666555544443 33433 556667888888888853
No 129
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=72.46 E-value=61 Score=29.40 Aligned_cols=97 Identities=18% Similarity=0.291 Sum_probs=66.2
Q ss_pred hHHHHHhhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhh---hhhhhhhhhHHHHHHHhhHHHHHHHHhhHHHHH
Q 012393 251 MLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFEL---KNKQSFMRDKIKILESSLNRANIEKAASAKEVN 327 (464)
Q Consensus 251 mL~stikDME~vIeDLksKv~kaE~rae~~E~kc~~LsEtN~eL---neELsflrskl~~LE~sL~~A~~~K~~TakdI~ 327 (464)
.|-++|+..|.=|--|+..+...+..-+.+....+-|+..|-++ ..++.-++..+.+|+.....+.+ =+|
T Consensus 20 ~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~Le-------llG 92 (120)
T PF12325_consen 20 RLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLE-------LLG 92 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------Hhc
Confidence 56778888888888888888888888888989999998888444 45566666666666666555543 344
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 012393 328 HRTKLMMEMVMQLATQRELIQKQVYSL 354 (464)
Q Consensus 328 ~~tK~i~dLV~qLa~ERErL~~Qissl 354 (464)
-++--+++|-..++.=++=.+.||..+
T Consensus 93 EK~E~veEL~~Dv~DlK~myr~Qi~~l 119 (120)
T PF12325_consen 93 EKSEEVEELRADVQDLKEMYREQIDQL 119 (120)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555555555555555555565443
No 130
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=71.90 E-value=1.6e+02 Score=33.78 Aligned_cols=96 Identities=23% Similarity=0.304 Sum_probs=75.6
Q ss_pred hHHHhHHHHhhhHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHhhcchHHHHhhhhHHHhhhhhHHhhhccccccchhHHH
Q 012393 23 DLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELK 102 (464)
Q Consensus 23 dLEkkL~es~~~eeeLk~kL~~~eqE~~~lEEaa~~~~eR~~EAENasEvL~G~Skel~gkLq~~Qf~L~as~~REseLk 102 (464)
.+++...-....-+.--.+|....+++..+.+.++.+-+|+-+|..--+.|+--.+.++.+++ ..+-....-|-+.+
T Consensus 562 ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~---~~~P~LS~AEr~~~ 638 (717)
T PF10168_consen 562 EIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLN---SQLPVLSEAEREFK 638 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccCCCCCHHHHHHH
Confidence 466666666666666667888899999999999999999999999999999998888888775 45666667788888
Q ss_pred HHHHhHHHHHhhhhHHHHH
Q 012393 103 SKLGDFIEQLKAKDMVLQK 121 (464)
Q Consensus 103 sKLk~s~EQLe~k~~~Lek 121 (464)
..|+....+|.+-...++.
T Consensus 639 ~EL~~~~~~l~~l~~si~~ 657 (717)
T PF10168_consen 639 KELERMKDQLQDLKASIEQ 657 (717)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888888777654444443
No 131
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=71.21 E-value=86 Score=28.90 Aligned_cols=73 Identities=22% Similarity=0.398 Sum_probs=29.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHHHh
Q 012393 129 EVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEIN 208 (464)
Q Consensus 129 E~~sL~eKV~sLEeQLkese~Ql~~akas~Ea~~~~isdmEnvIedLK~kVskAESRAe~AEskc~lLteTN~ELneEL~ 208 (464)
+...+.+-...+.+.++.....+...+........++.++. ..+.+.+.+++.-...+..+-++-..+.+.+.
T Consensus 110 ~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 182 (191)
T PF04156_consen 110 ELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ-------KELQDSREEVQELRSQLERLQENLQQLEEKIQ 182 (191)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444444333333333333 33333334444444444444444444444333
No 132
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=70.87 E-value=63 Score=29.10 Aligned_cols=66 Identities=14% Similarity=0.150 Sum_probs=45.7
Q ss_pred ccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 012393 289 EDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSL 354 (464)
Q Consensus 289 EtN~eLneELsflrskl~~LE~sL~~A~~~K~~TakdI~~~tK~i~dLV~qLa~ERErL~~Qissl 354 (464)
+.+.++-.+++....+...++..+..+...=.....|+..-...+.+.-+|.+.|.-|-..+|..|
T Consensus 80 ~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kL 145 (151)
T PF11559_consen 80 EQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKEREIEKL 145 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455556666666666666666666555555556676667788888999998888877777766
No 133
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=70.60 E-value=1.4e+02 Score=30.96 Aligned_cols=17 Identities=6% Similarity=0.157 Sum_probs=9.4
Q ss_pred HHHHHhHHHHHHHHHHH
Q 012393 325 EVNHRTKLMMEMVMQLA 341 (464)
Q Consensus 325 dI~~~tK~i~dLV~qLa 341 (464)
|..+..+....++.++.
T Consensus 350 ~~~~~~~~y~~ll~r~~ 366 (444)
T TIGR03017 350 DVENAQRAYDAAMQRYT 366 (444)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44445556666666553
No 134
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=70.56 E-value=1.5e+02 Score=31.34 Aligned_cols=30 Identities=27% Similarity=0.319 Sum_probs=16.3
Q ss_pred CccccchhhhhhHHhhhhhcccccceeeecCCCCchHH
Q 012393 397 GATVKTSEDAVSLMKSVQAGTHLNICRIYTRGLAYPEF 434 (464)
Q Consensus 397 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (464)
..+++|.+| |+.-++..+-..-|+ +..|+.
T Consensus 439 d~~i~~~~~-------ie~~lglpvLg~iP~-~~~~~~ 468 (498)
T TIGR03007 439 RPTVRSVRD-------LRELTGLPVLGVIPM-IATPEE 468 (498)
T ss_pred cCcCCCHHH-------HHHHcCCCeEEecCC-CCCHHH
Confidence 345555555 444455666666665 455554
No 135
>PRK10884 SH3 domain-containing protein; Provisional
Probab=70.54 E-value=32 Score=33.60 Aligned_cols=33 Identities=18% Similarity=0.257 Sum_probs=18.2
Q ss_pred HHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhh
Q 012393 164 QLNEMDNFIESLKESLYGAESRAESAEEKVTQL 196 (464)
Q Consensus 164 ~isdmEnvIedLK~kVskAESRAe~AEskc~lL 196 (464)
.++++++-+..|+.++..+.++.+.++.+..-+
T Consensus 133 ~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~ 165 (206)
T PRK10884 133 VINGLKEENQKLKNQLIVAQKKVDAANLQLDDK 165 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666666655555555554443
No 136
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=70.42 E-value=72 Score=31.58 Aligned_cols=40 Identities=15% Similarity=0.198 Sum_probs=34.3
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 012393 322 SAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLL 361 (464)
Q Consensus 322 TakdI~~~tK~i~dLV~qLa~ERErL~~Qissl~~eNkiL 361 (464)
.+.+++....-++-|-..|+.||.+...|..++-.|...-
T Consensus 129 ~~~~~~~l~~e~erL~aeL~~er~~~e~q~~~Fe~ER~~W 168 (202)
T PF06818_consen 129 GEDELGSLRREVERLRAELQRERQRREEQRSSFEQERRTW 168 (202)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3456777788899999999999999999999998887764
No 137
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=69.90 E-value=2.8e+02 Score=34.28 Aligned_cols=40 Identities=13% Similarity=0.133 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHhhcchHHHHhhhhHHHhhhhhHHhhhc
Q 012393 52 MEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNL 91 (464)
Q Consensus 52 lEEaa~~~~eR~~EAENasEvL~G~Skel~gkLq~~Qf~L 91 (464)
+--....+.+||.+.+|....|......+...|..+|--.
T Consensus 492 ~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~ 531 (1317)
T KOG0612|consen 492 LQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKN 531 (1317)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566778888888888887777777777776665433
No 138
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=68.57 E-value=98 Score=28.52 Aligned_cols=55 Identities=31% Similarity=0.411 Sum_probs=27.2
Q ss_pred chhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHHHhhhh
Q 012393 157 CFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLK 211 (464)
Q Consensus 157 s~Ea~~~~isdmEnvIedLK~kVskAESRAe~AEskc~lLteTN~ELneEL~~Lk 211 (464)
..+..+..+++...-+.+++........--....++..-+.+....+.+++..|+
T Consensus 96 el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 96 ELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444555555555555555444444445555555555555555555544
No 139
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=68.50 E-value=1.6e+02 Score=31.07 Aligned_cols=83 Identities=16% Similarity=0.152 Sum_probs=53.1
Q ss_pred hhhhhhhHHHHHHHhhHHHHHHHHhhH--------HHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhh
Q 012393 297 KQSFMRDKIKILESSLNRANIEKAASA--------KEVNHR-TKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQY 367 (464)
Q Consensus 297 ELsflrskl~~LE~sL~~A~~~K~~Ta--------kdI~~~-tK~i~dLV~qLa~ERErL~~Qissl~~eNkiL~~k~k~ 367 (464)
+++-+++.+..+++.+.++.......- .+...+ ..+..+-......+...++.++..+-..-......+..
T Consensus 237 ~~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~l~~a~~~l~~ 316 (457)
T TIGR01000 237 ILATIQQQIDQLQKSIASYQVQKAGLTKSTASNYASSQNSKLAQLKEQQLAKVKQEITDLNQKLLELESKIKSLKEDSQK 316 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 455556666667766666666554431 111222 34455555666777777778887776666666777778
Q ss_pred cCCCCCceeccc
Q 012393 368 SGKSSSATMYNA 379 (464)
Q Consensus 368 ~~~~~~~~~~~~ 379 (464)
+.+-+|+.|+-.
T Consensus 317 ~~I~AP~dG~V~ 328 (457)
T TIGR01000 317 GVIKAPEDGVLH 328 (457)
T ss_pred CEEECCCCeEEE
Confidence 888888887664
No 140
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=68.49 E-value=1.2e+02 Score=29.43 Aligned_cols=98 Identities=23% Similarity=0.266 Sum_probs=54.8
Q ss_pred hhhhhhhhHHHHHHhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHH
Q 012393 181 GAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDME 260 (464)
Q Consensus 181 kAESRAe~AEskc~lLteTN~ELneEL~~Lks~~s~~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~mL~stikDME 260 (464)
+|=.+.+.+++....|- ..-++|+..||.+--..-++...+++.+++.+.++.........-+- ++.-+++.
T Consensus 47 kAL~k~e~~e~~Lpqll---~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~-----L~~dknL~ 118 (194)
T PF15619_consen 47 KALQKYEDTEAELPQLL---QRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKK-----LSEDKNLA 118 (194)
T ss_pred HHHHHHHhhhhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHcCCch
Confidence 34455555566655544 23345555555542112345778888888888888876554443221 23334444
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhhhhhh
Q 012393 261 TLIEDLKSKVSKAESKTESVEEQCIVL 287 (464)
Q Consensus 261 ~vIeDLksKv~kaE~rae~~E~kc~~L 287 (464)
. .++|..+++.++.+++..+.+...|
T Consensus 119 e-ReeL~~kL~~~~~~l~~~~~ki~~L 144 (194)
T PF15619_consen 119 E-REELQRKLSQLEQKLQEKEKKIQEL 144 (194)
T ss_pred h-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 4667777777766666555554444
No 141
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=68.09 E-value=2e+02 Score=31.97 Aligned_cols=18 Identities=17% Similarity=0.444 Sum_probs=8.5
Q ss_pred HHhhHHHHHHHHHhhhhh
Q 012393 255 AIWDMETLIEDLKSKVSK 272 (464)
Q Consensus 255 tikDME~vIeDLksKv~k 272 (464)
.+..++.=|.++..|+..
T Consensus 399 ~~~~~e~el~~l~~~l~~ 416 (650)
T TIGR03185 399 ELRELEEELAEVDKKIST 416 (650)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 344444444444444444
No 142
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=68.03 E-value=77 Score=28.54 Aligned_cols=66 Identities=24% Similarity=0.318 Sum_probs=36.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHH
Q 012393 128 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKV 193 (464)
Q Consensus 128 SE~~sL~eKV~sLEeQLkese~Ql~~akas~Ea~~~~isdmEnvIedLK~kVskAESRAe~AEskc 193 (464)
++...|...+..|+.++.+++-.+..+.+..-+...++.+.+..+...|+.+.+..+..++...+|
T Consensus 66 ~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~ 131 (151)
T PF11559_consen 66 SDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQY 131 (151)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555556666666665555555544444444444555555555555555555555555554444
No 143
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=66.96 E-value=1.6e+02 Score=30.43 Aligned_cols=41 Identities=10% Similarity=0.208 Sum_probs=25.2
Q ss_pred HHHHHhhhhhhHHHHHhHHHHHHHHHHHHHhhcchHHHHhh
Q 012393 35 EEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMG 75 (464)
Q Consensus 35 eeeLk~kL~~~eqE~~~lEEaa~~~~eR~~EAENasEvL~G 75 (464)
+..+..+...+..-..|+++-...+..++-+||++.+-++-
T Consensus 159 ~~~~~~~~~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~ 199 (444)
T TIGR03017 159 DTNIELKVEPAQKAALWFVQQIAALREDLARAQSKLSAYQQ 199 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555566666666666666666666666666554
No 144
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=66.23 E-value=2.2e+02 Score=33.12 Aligned_cols=152 Identities=17% Similarity=0.167 Sum_probs=83.4
Q ss_pred hhhccccccchhHHHHHHHhHHHHHhhhhHHHHHhhhcC---chhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHH
Q 012393 88 QFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTK---NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQ 164 (464)
Q Consensus 88 Qf~L~as~~REseLksKLk~s~EQLe~k~~~Lekl~~s~---~SE~~sL~eKV~sLEeQLkese~Ql~~akas~Ea~~~~ 164 (464)
+.=|..+..||..+..++......|.+....+.-...-. ......+.+-...+|.+.+.....+...|..--.....
T Consensus 19 e~Ll~esa~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~d 98 (717)
T PF09730_consen 19 ESLLQESASKEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQD 98 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 445666777777777777777666666554444333220 12233333444444444443333333333333333445
Q ss_pred HhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhh
Q 012393 165 LNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEA 244 (464)
Q Consensus 165 isdmEnvIedLK~kVskAESRAe~AEskc~lLteTN~ELneEL~~Lks~~s~~~ek~~~LE~qLkese~QLqhA~As~eA 244 (464)
.+++|--|-.|...|+--- ++-++..-|-.-+--|.+|+.+|+++ ++-+.+-=.-++.||+.|--+...
T Consensus 99 yselEeENislQKqvs~Lk----~sQvefE~~Khei~rl~Ee~~~l~~q-------lee~~rLk~iae~qleEALesl~~ 167 (717)
T PF09730_consen 99 YSELEEENISLQKQVSVLK----QSQVEFEGLKHEIKRLEEEIELLNSQ-------LEEAARLKEIAEKQLEEALESLKS 167 (717)
T ss_pred hHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666555421 23344445666666777777777776 455555555677888888877766
Q ss_pred hHHHHH
Q 012393 245 SQEQQS 250 (464)
Q Consensus 245 s~eqQ~ 250 (464)
--||=.
T Consensus 168 EReqk~ 173 (717)
T PF09730_consen 168 EREQKN 173 (717)
T ss_pred HHHHHH
Confidence 555333
No 145
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=65.60 E-value=2.2e+02 Score=31.41 Aligned_cols=212 Identities=25% Similarity=0.343 Sum_probs=114.9
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHH
Q 012393 127 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEE 206 (464)
Q Consensus 127 ~SE~~sL~eKV~sLEeQLkese~Ql~~akas~Ea~~~~isdmEnvIedLK~kVskAESRAe~AEskc~lLteTN~ELneE 206 (464)
.+|++.|.+-++.|..++.+---|-..+.+... +|--..-..|.++++|.+- |+ +.|++.
T Consensus 172 ~ee~kqlEe~ieeL~qsl~kd~~~~~~l~~e~n-------~~k~s~~s~~~k~l~al~l----------lv---~tLee~ 231 (446)
T KOG4438|consen 172 EEEVKQLEENIEELNQSLLKDFNQQMSLLAEYN-------KMKKSSTSEKNKILNALKL----------LV---VTLEEN 231 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhHhhHHHHHHHHHHHHH----------HH---HHHHHH
Confidence 477777777777777777665555444444322 1222222233333333221 11 234455
Q ss_pred HhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHhhhhhhhhhh---hhhhhh
Q 012393 207 INFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKT---ESVEEQ 283 (464)
Q Consensus 207 L~~Lks~~s~~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~mL~stikDME~vIeDLksKv~kaE~ra---e~~E~k 283 (464)
-+-|+++--...+| |=+-+.+..--++.-+-+-..-++++..|-.++--|.+++.|++.=.-++.+.- ++.|-.
T Consensus 232 ~~~LktqIV~sPeK---L~~~leemk~~l~k~k~~~~~l~~K~~iL~ekv~~~qti~~e~~~~lk~i~~~~~e~d~~Et~ 308 (446)
T KOG4438|consen 232 ANCLKTQIVQSPEK---LKEALEEMKDLLQKEKSAMVELQEKAKILEEKVTNLQTIEKELKALLKKISSDGVEYDSLETK 308 (446)
T ss_pred HHHHHHHHcCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence 55555552111222 222333333344444444445567888888999999999999988777777665 666666
Q ss_pred hhhhhccchhhhhhhhhhhhHH------HHHHHhhHHHHHHHHhhHHHHHHHh----HHHHH------------------
Q 012393 284 CIVLSEDNFELKNKQSFMRDKI------KILESSLNRANIEKAASAKEVNHRT----KLMME------------------ 335 (464)
Q Consensus 284 c~~LsEtN~eLneELsflrskl------~~LE~sL~~A~~~K~~TakdI~~~t----K~i~d------------------ 335 (464)
..+| ..|++|+.-+-...+.+ +.+-..|.-+..+|..+..|...|. +.++|
T Consensus 309 ~v~l-ke~~~Le~q~e~~~~e~~~lk~~e~~~kqL~~~~kek~~~~Qd~~~r~~E~v~~~md~~~~~~n~V~~kr~a~~~ 387 (446)
T KOG4438|consen 309 VVEL-KEILELEDQIELNQLELEKLKMFENLTKQLNELKKEKESRRQDLENRKTESVKAMMDDNIEKYNVVRQKRNAKVK 387 (446)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcccchhhccHHH
Confidence 6555 45777765444333332 2333444444555555555444331 11111
Q ss_pred -------------HHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 012393 336 -------------MVMQLATQRELIQKQVYSLTSENKLLV 362 (464)
Q Consensus 336 -------------LV~qLa~ERErL~~Qissl~~eNkiL~ 362 (464)
+.-.++..|+.+.+||+.++-+=.+|.
T Consensus 388 kie~~~~~ik~~e~~l~~~~~r~e~~~~i~aI~l~~~llk 427 (446)
T KOG4438|consen 388 KIEEKNEEIKKIELFLEIARGREELESQIVAITLECILLK 427 (446)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222677888888888888877666554
No 146
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=65.44 E-value=1.8e+02 Score=30.48 Aligned_cols=119 Identities=24% Similarity=0.282 Sum_probs=69.9
Q ss_pred hHHHHHHhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHH
Q 012393 188 SAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLK 267 (464)
Q Consensus 188 ~AEskc~lLteTN~ELneEL~~Lks~~s~~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~mL~stikDME~vIeDLk 267 (464)
.--.||..|-+.|..|..|-+.|+.-.. .+|.+ |+| +|.|-.
T Consensus 164 ~Lq~Klk~LEeEN~~LR~Ea~~L~~et~-------~~Eek-------------------Eqq------------Lv~dcv 205 (306)
T PF04849_consen 164 ALQEKLKSLEEENEQLRSEASQLKTETD-------TYEEK-------------------EQQ------------LVLDCV 205 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHh-------hccHH-------------------HHH------------HHHHHH
Confidence 3445778888888888888888887421 11111 111 111222
Q ss_pred hhhhhhhhhhhhhhhhhhhhhccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHH
Q 012393 268 SKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELI 347 (464)
Q Consensus 268 sKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrskl~~LE~sL~~A~~~K~~TakdI~~~tK~i~dLV~qLa~ERErL 347 (464)
...+-|-..+...-+-...=+|.|..-.+|++.|.+++-+|+.++.+--.++..-...+...+ +.=.+|+.|-.-|
T Consensus 206 ~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~sk----e~Q~~L~aEL~el 281 (306)
T PF04849_consen 206 KQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASK----ESQRQLQAELQEL 281 (306)
T ss_pred HHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 222323333333333344456788899999999999999999999888777665555554443 3344444444333
Q ss_pred H
Q 012393 348 Q 348 (464)
Q Consensus 348 ~ 348 (464)
+
T Consensus 282 q 282 (306)
T PF04849_consen 282 Q 282 (306)
T ss_pred H
Confidence 3
No 147
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=65.25 E-value=2.2e+02 Score=31.24 Aligned_cols=91 Identities=15% Similarity=0.285 Sum_probs=56.3
Q ss_pred hHHHHHHHhHHHHHhhhhHHHHHhhhc---CchhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhh---HHHH
Q 012393 99 SELKSKLGDFIEQLKAKDMVLQKLEST---KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEM---DNFI 172 (464)
Q Consensus 99 seLksKLk~s~EQLe~k~~~Lekl~~s---~~SE~~sL~eKV~sLEeQLkese~Ql~~akas~Ea~~~~isdm---EnvI 172 (464)
.++...+.++..+|+.-...+...-++ .+.+...+.+++..+....+.|+..+.......+..+.++..+ +.-+
T Consensus 269 ~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~~l 348 (563)
T TIGR00634 269 RELAEQVGNALTEVEEATRELQNYLDELEFDPERLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDESL 348 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 345555555555555444444433332 2456677888888888888888877777666666655555544 3456
Q ss_pred HHHHHHHHhhhhhhhhH
Q 012393 173 ESLKESLYGAESRAESA 189 (464)
Q Consensus 173 edLK~kVskAESRAe~A 189 (464)
++|+.++.+++.+....
T Consensus 349 e~L~~el~~l~~~l~~~ 365 (563)
T TIGR00634 349 EALEEEVDKLEEELDKA 365 (563)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666666666665444
No 148
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=64.92 E-value=3.4e+02 Score=33.38 Aligned_cols=135 Identities=12% Similarity=0.100 Sum_probs=81.3
Q ss_pred HHHhhhhhHHhhhccccccchhHHHHHHHhHHHHHhhhhHHHHHhhhc-----CchhhhhHHHHHHHHHHHHHHHHHH--
Q 012393 78 KEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLEST-----KNSEVLTMKEKVKSLEEQLKESEIR-- 150 (464)
Q Consensus 78 kel~gkLq~~Qf~L~as~~REseLksKLk~s~EQLe~k~~~Lekl~~s-----~~SE~~sL~eKV~sLEeQLkese~Q-- 150 (464)
......+......+.+...+=.....++..+...+.+....+...... .......+.+-+..+..++......
T Consensus 789 ~~A~~~l~~A~~~~~~a~~~l~~a~~~l~~a~~~~~~a~~~l~~aaa~l~L~a~~~~l~~~~~aL~~y~~~l~~l~~~~~ 868 (1353)
T TIGR02680 789 RAAHRRAAEAERQAESAERELARAARKAAAAAAAWKQARRELERDAADLDLPTDPDALEAVGLALKRFGDHLHTLEVAVR 868 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555556666666666666555554444333 2455666777776666666555443
Q ss_pred -HhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhh----HHHHHHHhhhhc
Q 012393 151 -LQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTN----LELSEEINFLKG 212 (464)
Q Consensus 151 -l~~akas~Ea~~~~isdmEnvIedLK~kVskAESRAe~AEskc~lLteTN----~ELneEL~~Lks 212 (464)
+.+|..........+.+.+.-+.+....+..++..+..+..++..|.++= .++..+|..++.
T Consensus 869 ~L~~A~~~~~~a~~~le~ae~~l~~~~~e~~~~~~e~~~a~~~l~~l~e~l~~~~eel~a~L~e~r~ 935 (1353)
T TIGR02680 869 ELRHAATRAAEQRARAARAESDAREAAEDAAEARAEAEEASLRLRTLEESVGAMVDEIRARLAETRA 935 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455554555667777777788888888888888888877777776663 344444555443
No 149
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=64.67 E-value=1.3e+02 Score=28.51 Aligned_cols=160 Identities=23% Similarity=0.265 Sum_probs=77.3
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHH
Q 012393 127 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEE 206 (464)
Q Consensus 127 ~SE~~sL~eKV~sLEeQLkese~Ql~~akas~Ea~~~~isdmEnvIedLK~kVskAESRAe~AEskc~lLteTN~ELneE 206 (464)
||+ ..|.-.+..+++++......+..+.+... .++.-++++...+.+=+.+|..|-..- |-.|=.+
T Consensus 23 DP~-~~l~q~ird~e~~l~~a~~~~a~~~a~~~-------~le~~~~~~~~~~~~~~~~A~~Al~~g------~edLAr~ 88 (221)
T PF04012_consen 23 DPE-KMLEQAIRDMEEQLRKARQALARVMANQK-------RLERKLDEAEEEAEKWEKQAELALAAG------REDLARE 88 (221)
T ss_pred CHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHcC------CHHHHHH
Confidence 676 45555555555555555555555554433 444444555555555555555543321 2222111
Q ss_pred HhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHhhhhhhhhhhhhhhhhhh-
Q 012393 207 INFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCI- 285 (464)
Q Consensus 207 L~~Lks~~s~~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~mL~stikDME~vIeDLksKv~kaE~rae~~E~kc~- 285 (464)
. | .+...++.++..+..+++.+...+ ..|...|..|+.-|.++++|..-.-.|...+.-+--
T Consensus 89 a--l--------~~k~~~e~~~~~l~~~~~~~~~~~-------~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~ 151 (221)
T PF04012_consen 89 A--L--------QRKADLEEQAERLEQQLDQAEAQV-------EKLKEQLEELEAKLEELKSKREELKARENAAKAQKKV 151 (221)
T ss_pred H--H--------HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 123334444544444444433322 246667778888888888777665555443333221
Q ss_pred --hhhcc-chhhhhhhhhhhhHHHHHHHhhHHHHH
Q 012393 286 --VLSED-NFELKNKQSFMRDKIKILESSLNRANI 317 (464)
Q Consensus 286 --~LsEt-N~eLneELsflrskl~~LE~sL~~A~~ 317 (464)
.++.. .......+.-++.|+..+|..-.....
T Consensus 152 ~~~~~~~~~~~a~~~~er~e~ki~~~ea~a~a~~e 186 (221)
T PF04012_consen 152 NEALASFSVSSAMDSFERMEEKIEEMEARAEASAE 186 (221)
T ss_pred HHHhccCCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 233344455555665555554444433
No 150
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=63.86 E-value=2.3e+02 Score=31.05 Aligned_cols=26 Identities=19% Similarity=0.233 Sum_probs=13.1
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHhhhh
Q 012393 173 ESLKESLYGAESRAESAEEKVTQLTD 198 (464)
Q Consensus 173 edLK~kVskAESRAe~AEskc~lLte 198 (464)
+.-...++++|.-.+....=...|.+
T Consensus 215 ~~e~~~L~n~e~i~~~~~~~~~~L~~ 240 (563)
T TIGR00634 215 EAEQQRLSNLEKLRELSQNALAALRG 240 (563)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHhC
Confidence 33344455555555555555555543
No 151
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=62.46 E-value=2.6e+02 Score=31.27 Aligned_cols=142 Identities=16% Similarity=0.083 Sum_probs=71.0
Q ss_pred hhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhhhhh
Q 012393 219 KKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQ 298 (464)
Q Consensus 219 ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~mL~stikDME~vIeDLksKv~kaE~rae~~E~kc~~LsEtN~eLneEL 298 (464)
+|+..+-..+.+.-..+.-.++-++-.+.|=-.|.|-|-|||.-|-+|.+-..- ..-..+++..+.--+-..|+.++
T Consensus 302 ~kstas~~E~ee~rve~~~s~ed~~~~q~q~~~Lrs~~~d~EAq~r~l~s~~~~---q~~~~h~~ka~~~~~~~~l~~~~ 378 (554)
T KOG4677|consen 302 DKSTASRKEFEETRVELPFSAEDSAHIQDQYTLLRSQIIDIEAQDRHLESAGQT---QIFRKHPRKASILNMPLVLTLFY 378 (554)
T ss_pred CcchhHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHH---HHHHhhhHhhhhhhchHHHHHHH
Confidence 344444444444333333344444444555555666666666655555554331 11111222222222233344433
Q ss_pred hhh------------------hhHHHHHHHhhHH-HHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 012393 299 SFM------------------RDKIKILESSLNR-ANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENK 359 (464)
Q Consensus 299 sfl------------------rskl~~LE~sL~~-A~~~K~~TakdI~~~tK~i~dLV~qLa~ERErL~~Qissl~~eNk 359 (464)
.-+ .+|+-+.++.|.. ++..|..+-.| +++...+---||..=--+-|.++.++...|+
T Consensus 379 ec~~~e~e~~~~~~~r~~~~~qski~dk~~el~kl~~~l~~r~~~~---s~~~l~~~~~qLt~tl~qkq~~le~v~~~~~ 455 (554)
T KOG4677|consen 379 ECFYHETEAEGTFSSRVNLKKQSKIPDKQYELTKLAARLKLRAWND---SVDALFTTKNQLTYTLKQKQIGLERVVEILH 455 (554)
T ss_pred HHHHHHHHHhhhhhhhccchhhccCcchHHHHHHHHHHHHHHhhhh---hHHHHhchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 333 4455555555543 33444444444 4556666666676666566777889999998
Q ss_pred HHHHHHh
Q 012393 360 LLVEKLQ 366 (464)
Q Consensus 360 iL~~k~k 366 (464)
.||..+.
T Consensus 456 ~ln~~le 462 (554)
T KOG4677|consen 456 KLNAPLE 462 (554)
T ss_pred hhhhhHH
Confidence 8876553
No 152
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=62.44 E-value=1.3e+02 Score=31.13 Aligned_cols=113 Identities=14% Similarity=0.185 Sum_probs=52.1
Q ss_pred HHHhHHHHhhhHHHHHhhhhhhHHHHHhHHHHHHH-----------HHHHHHhhcchHHHHhhhhHHHhhhhhHHhhhcc
Q 012393 24 LEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEV-----------VWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLN 92 (464)
Q Consensus 24 LEkkL~es~~~eeeLk~kL~~~eqE~~~lEEaa~~-----------~~eR~~EAENasEvL~G~Skel~gkLq~~Qf~L~ 92 (464)
|.+.+.-...+..+|..+......+...+...... +-+++.+-..-.+..++.+.++...|+.+...+.
T Consensus 163 L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~ 242 (312)
T smart00787 163 LMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIE 242 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444333332 3344444444444444444444444444443333
Q ss_pred ccccchhHHHHHHHhHHHHHhhhhHHHHHhhhcCchhhhhHHHHHHHHHHH
Q 012393 93 GSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQ 143 (464)
Q Consensus 93 as~~REseLksKLk~s~EQLe~k~~~Lekl~~s~~SE~~sL~eKV~sLEeQ 143 (464)
+...+.....+++..-+..++.-..-...|+..|..++..||++
T Consensus 243 -------~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~l 286 (312)
T smart00787 243 -------DLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQSL 286 (312)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 23333333333333333333333333467777777777777654
No 153
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=62.34 E-value=2.9e+02 Score=31.72 Aligned_cols=31 Identities=19% Similarity=0.273 Sum_probs=20.8
Q ss_pred CCCCCCccccchhhhhhHHhhhhhcccccceee
Q 012393 392 TNNLAGATVKTSEDAVSLMKSVQAGTHLNICRI 424 (464)
Q Consensus 392 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~ 424 (464)
--+|.+++..=|+|+--+..|+-.|. |||-+
T Consensus 367 Vf~p~~sQ~~VF~e~~~lv~S~lDGY--nVCIF 397 (670)
T KOG0239|consen 367 VFGPLASQDDVFEEVSPLVQSALDGY--NVCIF 397 (670)
T ss_pred ecCCcccHHHHHHHHHHHHHHHhcCc--ceeEE
Confidence 33455666667788777888877774 67744
No 154
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=61.81 E-value=1.9e+02 Score=29.45 Aligned_cols=101 Identities=16% Similarity=0.161 Sum_probs=57.9
Q ss_pred hHHHHHhHHHHHHHHHHHHHhhcchHHHHhhhhHHHhhhhhHHhhhccccccchhHHHHHHHhHHHHHhhhhHHHHHhhh
Q 012393 45 TEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLES 124 (464)
Q Consensus 45 ~eqE~~~lEEaa~~~~eR~~EAENasEvL~G~Skel~gkLq~~Qf~L~as~~REseLksKLk~s~EQLe~k~~~Lekl~~ 124 (464)
..+-..|+++....+-.++-+|+.+..-++.....+ +..+...--....+.|+.-+.+++.+-..+...-.
T Consensus 168 ~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~---------d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~ 238 (362)
T TIGR01010 168 RKDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVF---------DPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITP 238 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc---------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 345567777777777778878877777766533222 11111111122333343333333333223322222
Q ss_pred cCchhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 012393 125 TKNSEVLTMKEKVKSLEEQLKESEIRLQNA 154 (464)
Q Consensus 125 s~~SE~~sL~eKV~sLEeQLkese~Ql~~a 154 (464)
...|.+..+..++..|+.|+..-..++...
T Consensus 239 ~~~P~v~~l~~~i~~l~~~i~~e~~~i~~~ 268 (362)
T TIGR01010 239 EQNPQVPSLQARIKSLRKQIDEQRNQLSGG 268 (362)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 237999999999999999998877666543
No 155
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=60.97 E-value=2.9e+02 Score=31.35 Aligned_cols=268 Identities=18% Similarity=0.192 Sum_probs=130.4
Q ss_pred HhhcchHHHHhhhhHHHhhhhhHHhhhccccccchhHHHHHHHhHHHHHhhhhHHHHHhhhc----Cchhhh-hHHHHHH
Q 012393 64 LEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLEST----KNSEVL-TMKEKVK 138 (464)
Q Consensus 64 ~EAENasEvL~G~Skel~gkLq~~Qf~L~as~~REseLksKLk~s~EQLe~k~~~Lekl~~s----~~SE~~-sL~eKV~ 138 (464)
+|-+..++-|.|..--+..|++.+--.+.-...+.....++....+.+|..-...+...... .+||+- .|++-+.
T Consensus 11 ~Erd~ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~ 90 (617)
T PF15070_consen 11 AERDQYAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAE 90 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHH
Confidence 45566778888888888888877766666655555555555444444443322222211111 234443 4555555
Q ss_pred HHHHHHHHHHHHHhhhhhc-------hhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhh---hhhhHHHHHHHh
Q 012393 139 SLEEQLKESEIRLQNANAC-------FQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQL---TDTNLELSEEIN 208 (464)
Q Consensus 139 sLEeQLkese~Ql~~akas-------~Ea~~~~isdmEnvIedLK~kVskAESRAe~AEskc~lL---teTN~ELneEL~ 208 (464)
.|-+.+.....+++.-... .....+.+.++|..++++++..-...+..+..++-..-. ..-|.+|++.|.
T Consensus 91 ~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~ 170 (617)
T PF15070_consen 91 HLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLA 170 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHH
Confidence 5555444444443321111 122344777777777777765544433333333222222 345777887777
Q ss_pred hhhcCCC-CcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHhhhhhhhhhhhhhhhh----
Q 012393 209 FLKGNND-SNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQ---- 283 (464)
Q Consensus 209 ~Lks~~s-~~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~mL~stikDME~vIeDLksKv~kaE~rae~~E~k---- 283 (464)
.|.+.-- -+++|++ +.++++-=.+|..+|..|+...+.......++
T Consensus 171 Elq~~Fv~ltne~~e-----------------------------lt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K 221 (617)
T PF15070_consen 171 ELQDAFVKLTNENME-----------------------------LTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELK 221 (617)
T ss_pred HHHHHHHHHHHhhhH-----------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7776400 0012211 22333333344444444444444333333332
Q ss_pred ---hhhhhccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHhhHHHHHHHhHHHHHHHH----------HHHHHHHHHHHH
Q 012393 284 ---CIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVM----------QLATQRELIQKQ 350 (464)
Q Consensus 284 ---c~~LsEtN~eLneELsflrskl~~LE~sL~~A~~~K~~TakdI~~~tK~i~dLV~----------qLa~ERErL~~Q 350 (464)
.+.|...|..+.--|--| ..--++.-.+|..=-+++-..|.+|..|-. .+--|-+..+-.
T Consensus 222 ~qE~~~Lq~q~dq~~~~Lqqy-------~a~~q~l~~e~e~L~~q~l~Qtql~d~lq~eE~q~~~~~E~~~~ELq~~qe~ 294 (617)
T PF15070_consen 222 SQEAQSLQEQRDQYLGHLQQY-------VAAYQQLASEKEELHKQLLQQTQLMDRLQHEESQGKVQLEMAHQELQEAQEH 294 (617)
T ss_pred hHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 233333333332222222 111233444454444555555555544422 222455666777
Q ss_pred HHHhhhhhhHHHHHHhh
Q 012393 351 VYSLTSENKLLVEKLQY 367 (464)
Q Consensus 351 issl~~eNkiL~~k~k~ 367 (464)
+..++..|.-|-..+..
T Consensus 295 Lea~~qqNqqL~~qls~ 311 (617)
T PF15070_consen 295 LEALSQQNQQLQAQLSL 311 (617)
T ss_pred HHHHHhhhHHHHHHHHh
Confidence 88899999999887764
No 156
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=60.48 E-value=2.1e+02 Score=29.40 Aligned_cols=25 Identities=28% Similarity=0.221 Sum_probs=20.5
Q ss_pred HHHHHHhhhhhhHHHHHHHhhhhcC
Q 012393 189 AEEKVTQLTDTNLELSEEINFLKGN 213 (464)
Q Consensus 189 AEskc~lLteTN~ELneEL~~Lks~ 213 (464)
....|..|+.+|.+|-.++.+.-++
T Consensus 11 l~~h~~~L~~~N~~L~~~IqdtE~s 35 (258)
T PF15397_consen 11 LKKHEDFLTKLNKELIKEIQDTEDS 35 (258)
T ss_pred HHHHHHHHHHhhHHHHHHHHhHHhh
Confidence 4567888999999999998887775
No 157
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=59.87 E-value=1e+02 Score=31.74 Aligned_cols=100 Identities=22% Similarity=0.266 Sum_probs=53.0
Q ss_pred hhhhhHHhhhccccccchhHHHHHHHhHHHHHhhhh----HHHH------HhhhcCchhhhhHHHHHHHHHHHHHHHHHH
Q 012393 81 LGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKD----MVLQ------KLESTKNSEVLTMKEKVKSLEEQLKESEIR 150 (464)
Q Consensus 81 ~gkLq~~Qf~L~as~~REseLksKLk~s~EQLe~k~----~~Le------kl~~s~~SE~~sL~eKV~sLEeQLkese~Q 150 (464)
+..+-.+=+||...+.+=+=|+++|....+--+..+ ...+ ++.. ...|.-.+.+++...|+.+++...+
T Consensus 151 l~e~~~~l~DLesa~vkV~WLR~~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~-~~~ELe~~~EeL~~~Eke~~e~~~~ 229 (269)
T PF05278_consen 151 LKEMIATLKDLESAKVKVDWLRSKLEEILEAKEIYDQHETREEEKEEKDRKLEL-KKEELEELEEELKQKEKEVKEIKER 229 (269)
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445666666666777777776655433211 1111 1111 2455555566666666666666666
Q ss_pred HhhhhhchhhhHHHHhhhHHHHHHHHHHHHh
Q 012393 151 LQNANACFQTSQEQLNEMDNFIESLKESLYG 181 (464)
Q Consensus 151 l~~akas~Ea~~~~isdmEnvIedLK~kVsk 181 (464)
+...++..-....+-+.|...+..+|+||-+
T Consensus 230 i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~k 260 (269)
T PF05278_consen 230 ITEMKGRLGELEMESTRLSKTIKSIKSKVEK 260 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6555555444444555555566666666544
No 158
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=59.52 E-value=4.4e+02 Score=32.95 Aligned_cols=74 Identities=19% Similarity=0.307 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHHHhhhhc
Q 012393 139 SLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKG 212 (464)
Q Consensus 139 sLEeQLkese~Ql~~akas~Ea~~~~isdmEnvIedLK~kVskAESRAe~AEskc~lLteTN~ELneEL~~Lks 212 (464)
.|=.++++.=..|.++.+-.......++-.+++-.+-+..-++|+---.+|+.-..-|-+.-.....--+.+++
T Consensus 1515 ~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~ 1588 (1758)
T KOG0994|consen 1515 QLTGEIQERVASLPNVDAILSRTKGDIARAENLQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQG 1588 (1758)
T ss_pred HHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333444444444444333333334444455544444444444444445555544454444444444444444
No 159
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=59.17 E-value=1.1e+02 Score=30.54 Aligned_cols=57 Identities=19% Similarity=0.269 Sum_probs=41.3
Q ss_pred HHHHHHhhHHHHHHHHhhHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 012393 305 IKILESSLNRANIEKAASAKEV---NHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLL 361 (464)
Q Consensus 305 l~~LE~sL~~A~~~K~~TakdI---~~~tK~i~dLV~qLa~ERErL~~Qissl~~eNkiL 361 (464)
+.++.+-......+|++-+++| ..-...|++++.|.-.||++....|.-+..+=.-|
T Consensus 34 L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~L 93 (230)
T PF10146_consen 34 LEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPL 93 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555666777766655 66677899999999999999999888887764444
No 160
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=59.15 E-value=69 Score=26.43 Aligned_cols=62 Identities=26% Similarity=0.315 Sum_probs=36.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHHH
Q 012393 128 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEI 207 (464)
Q Consensus 128 SE~~sL~eKV~sLEeQLkese~Ql~~akas~Ea~~~~isdmEnvIedLK~kVskAESRAe~AEskc~lLteTN~ELneEL 207 (464)
+++.+|++++.++..++.-++. .+..|-..=..|.+++..|-..|.-|..-|--|..||
T Consensus 5 a~~~~Lr~rLd~~~rk~~~~~~---------------------~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el 63 (69)
T PF14197_consen 5 AEIATLRNRLDSLTRKNSVHEI---------------------ENKRLRRERDSAERQLGDAYEENNKLKEENEALRKEL 63 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888888888777765554 3444444445555555555555555555555555554
Q ss_pred hhh
Q 012393 208 NFL 210 (464)
Q Consensus 208 ~~L 210 (464)
..+
T Consensus 64 ~~~ 66 (69)
T PF14197_consen 64 EEL 66 (69)
T ss_pred HHh
Confidence 443
No 161
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=58.44 E-value=1.9e+02 Score=28.40 Aligned_cols=35 Identities=23% Similarity=0.327 Sum_probs=26.4
Q ss_pred hhhhhhhhhhHHHHHHHhhHHHHHHHHhhHHHHHHH
Q 012393 294 LKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHR 329 (464)
Q Consensus 294 LneELsflrskl~~LE~sL~~A~~~K~~TakdI~~~ 329 (464)
+..-|+-|.+||.+|...|..| ..+..-|.++...
T Consensus 183 i~~~L~~~~~kL~Dl~~~l~eA-~~~~~ea~~ln~~ 217 (264)
T PF06008_consen 183 IRDDLNDYNAKLQDLRDLLNEA-QNKTREAEDLNRA 217 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 4566788999999999999998 4555556666555
No 162
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=58.02 E-value=3.8e+02 Score=31.71 Aligned_cols=67 Identities=25% Similarity=0.253 Sum_probs=40.0
Q ss_pred HHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHh
Q 012393 174 SLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKV 240 (464)
Q Consensus 174 dLK~kVskAESRAe~AEskc~lLteTN~ELneEL~~Lks~~s~~~ek~~~LE~qLkese~QLqhA~A 240 (464)
+.-..|.--|.|--+|-....--.+-|.+|+.+|..-..----.-+|..+|-.+|...+.+|+.+-+
T Consensus 67 d~E~ritt~e~rflnaqre~t~~~d~ndklE~~Lankda~lrq~eekn~slqerLelaE~~l~qs~r 133 (916)
T KOG0249|consen 67 DMEERITTLEKRFLNAQRESTSIHDLNDKLENELANKDADLRQNEEKNRSLQERLELAEPKLQQSLR 133 (916)
T ss_pred ccccccchHHHHHHhccCCCCCcccchHHHHHHHhCcchhhchhHHhhhhhhHHHHHhhHhhHhHHh
Confidence 3334444556666666666677777888888887654432111245566666666666666666555
No 163
>PHA02414 hypothetical protein
Probab=56.50 E-value=30 Score=31.16 Aligned_cols=75 Identities=24% Similarity=0.255 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHH
Q 012393 170 NFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQ 249 (464)
Q Consensus 170 nvIedLK~kVskAESRAe~AEskc~lLteTN~ELneEL~~Lks~~s~~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ 249 (464)
.-|.+|=++|-.-|++.+..+--- -++|.+|+.++..||+- +.+|.+.+- -+-|+|
T Consensus 4 ~~in~Lv~~v~~ledKiQ~Gelt~---kgdn~eL~~av~ELRdi-------vvslDKd~A--------------v~sEKq 59 (111)
T PHA02414 4 KEINNLVSQVETLEDKIQEGELTD---KGDNKELEVAVAELRDI-------VVSLDKDVA--------------VNSEKQ 59 (111)
T ss_pred hHHHHHHHHHHHHHHHHhcCcccc---CCchHHHHHHHHHHHHH-------HHHhhhHhh--------------hhHHHh
Confidence 345555555555555555443111 13899999999999985 778877663 244789
Q ss_pred HhHHHHHhhHHHHHHHHHh
Q 012393 250 SMLYSAIWDMETLIEDLKS 268 (464)
Q Consensus 250 ~mL~stikDME~vIeDLks 268 (464)
+-+|.-|.-+|.-|+.|-.
T Consensus 60 shi~yQi~~Lee~i~aL~~ 78 (111)
T PHA02414 60 SHIYYQIERLEEKISALAE 78 (111)
T ss_pred hHHHHHHHHHHHHHHHHHh
Confidence 9999999888888887753
No 164
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=56.50 E-value=1.8e+02 Score=27.54 Aligned_cols=53 Identities=30% Similarity=0.361 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhh
Q 012393 134 KEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRA 186 (464)
Q Consensus 134 ~eKV~sLEeQLkese~Ql~~akas~Ea~~~~isdmEnvIedLK~kVskAESRA 186 (464)
-.+...++.++..++.++..+....+.....+..|++-|.++|.+....-.|.
T Consensus 90 l~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~ 142 (221)
T PF04012_consen 90 LQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARE 142 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444344444444444444444433333333
No 165
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=55.90 E-value=2.5e+02 Score=28.96 Aligned_cols=196 Identities=23% Similarity=0.297 Sum_probs=109.0
Q ss_pred HHHHhhhhHHHhhhhhHHhhhccccccchhHHHHHHHhHHHHHhhhhHHHHHhhhcCchhhhhHHHHHHHHHHHHHHHHH
Q 012393 70 AEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEI 149 (464)
Q Consensus 70 sEvL~G~Skel~gkLq~~Qf~L~as~~REseLksKLk~s~EQLe~k~~~Lekl~~s~~SE~~sL~eKV~sLEeQLkese~ 149 (464)
++-|.+..+.+..+++.--..=.....--..|+.||++.++|-+.++.-++++-.. ..||-||.+...
T Consensus 109 ~~kFq~~L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye~rE~~~~~~~k~------------keLE~Ql~~AKl 176 (309)
T PF09728_consen 109 SEKFQATLKDIQAQMEEQSERNIKLREENEELREKLKSLIEQYELREEHFEKLLKQ------------KELEVQLAEAKL 176 (309)
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH------------HHHHHHHHHHHH
Confidence 33444555555555443322222223334567777887777777666555554333 334444443333
Q ss_pred HHhhhhhchhhhHHHHhh-hHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHH
Q 012393 150 RLQNANACFQTSQEQLNE-MDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQL 228 (464)
Q Consensus 150 Ql~~akas~Ea~~~~isd-mEnvIedLK~kVskAESRAe~AEskc~lLteTN~ELneEL~~Lks~~s~~~ek~~~LE~qL 228 (464)
+-+...+..+ .++... -+.++++.. +|..+.+|-.+|...|+.--+ |..-++..|
T Consensus 177 ~q~~~~~~~e--~~k~~~~~~~~l~~~~---------------~~~~~~~~E~~Lr~QL~~Y~~-------Kf~efq~tL 232 (309)
T PF09728_consen 177 EQQQEEAEQE--KEKAKQEKEILLEEAA---------------QVQTLKETEKELREQLNLYSE-------KFEEFQDTL 232 (309)
T ss_pred HHHHHHHHhH--HHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence 3222222111 111110 111222221 888999999999988876544 455555555
Q ss_pred hhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhhhhhhhhhhHHHHH
Q 012393 229 RDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKIL 308 (464)
Q Consensus 229 kese~QLqhA~As~eAs~eqQ~mL~stikDME~vIeDLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrskl~~L 308 (464)
..|+.--. + +..-|.+|-.-|..|-.......++.|..-...+-+.+.+-.+.+++.-++.++..|
T Consensus 233 ~kSNe~F~-------t-------fk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kL 298 (309)
T PF09728_consen 233 NKSNEVFE-------T-------FKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKL 298 (309)
T ss_pred HHhHHHHH-------H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44321111 1 111255555666666666666666666777778999999999999999999999999
Q ss_pred HHhhHHHH
Q 012393 309 ESSLNRAN 316 (464)
Q Consensus 309 E~sL~~A~ 316 (464)
|+ |++|.
T Consensus 299 e~-LcRaL 305 (309)
T PF09728_consen 299 EK-LCRAL 305 (309)
T ss_pred HH-HHHHH
Confidence 75 45443
No 166
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=55.90 E-value=3.3e+02 Score=30.33 Aligned_cols=97 Identities=25% Similarity=0.203 Sum_probs=64.7
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHH
Q 012393 127 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEE 206 (464)
Q Consensus 127 ~SE~~sL~eKV~sLEeQLkese~Ql~~akas~Ea~~~~isdmEnvIedLK~kVskAESRAe~AEskc~lLteTN~ELneE 206 (464)
..|+..|..++.-||+|+|+.+.....+-+.-+ ++-.-|.-.+++ .|.--.++-..+.-+|.+.|-+|...
T Consensus 249 kqEnlqLvhR~h~LEEq~reqElraeE~l~Ee~-------rrhrEil~k~eR--easle~Enlqmr~qqleeentelRs~ 319 (502)
T KOG0982|consen 249 KQENLQLVHRYHMLEEQRREQELRAEESLSEEE-------RRHREILIKKER--EASLEKENLQMRDQQLEEENTELRSL 319 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH-------HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999987554443322 233333333333 24445566777888899999999999
Q ss_pred HhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhH
Q 012393 207 INFLKGNNDSNTKKVGILENQLRDLEIQLQQAK 239 (464)
Q Consensus 207 L~~Lks~~s~~~ek~~~LE~qLkese~QLqhA~ 239 (464)
+..||+. .+-|+.-...+.-+|+-+.
T Consensus 320 ~arlksl-------~dklaee~qr~sd~LE~lr 345 (502)
T KOG0982|consen 320 IARLKSL-------ADKLAEEDQRSSDLLEALR 345 (502)
T ss_pred HHHHHHH-------HHHHhhhhhhHHHHHHHHH
Confidence 9999987 3344444444444444433
No 167
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=55.75 E-value=2.4e+02 Score=28.72 Aligned_cols=40 Identities=20% Similarity=0.358 Sum_probs=21.4
Q ss_pred cccccceeeecCCCC----chHHHHHHHHHHHHHHHHHHHhhhccce
Q 012393 416 GTHLNICRIYTRGLA----YPEFVKKVIAMMMILLILIMSYTITGLT 458 (464)
Q Consensus 416 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (464)
..+.++..|.|-.++ ||. ....++.++++.++.|++.+++
T Consensus 310 ~~~~~~~vi~~p~~P~~p~~P~---~~~~l~~~~~~gl~l~~~~~l~ 353 (362)
T TIGR01010 310 RQQLYLEVISQPSLPDDALEPY---RLYNILATFVILLILYGVLSLL 353 (362)
T ss_pred hhheeeeeeeCCCCCCCcCCCh---HHHHHHHHHHHHHHHHHHHHHH
Confidence 346667777665544 664 3334444455555555555543
No 168
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=54.93 E-value=2e+02 Score=27.60 Aligned_cols=27 Identities=15% Similarity=0.273 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHhhhccceeeec
Q 012393 436 KKVIAMMMILLILIMSYTITGLTFQVL 462 (464)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (464)
.-.+..+.=++.++-.|.-.-|.|.+.
T Consensus 198 saALgyvahlv~lls~yL~v~Lpy~i~ 224 (302)
T PF10186_consen 198 SAALGYVAHLVSLLSRYLGVPLPYPIT 224 (302)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCcc
Confidence 344444555555566665555555543
No 169
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=54.74 E-value=3.7e+02 Score=30.53 Aligned_cols=106 Identities=13% Similarity=0.153 Sum_probs=64.2
Q ss_pred hhHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHhhcchHHHHhhhhH------HHhhhhhHHhhhccccccchhHHHHHHH
Q 012393 33 QNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISK------EMLGRFQIVQFNLNGSLQRESELKSKLG 106 (464)
Q Consensus 33 ~~eeeLk~kL~~~eqE~~~lEEaa~~~~eR~~EAENasEvL~G~Sk------el~gkLq~~Qf~L~as~~REseLksKLk 106 (464)
.+...+..|...+.+-..|+++-...+..++-.||++.+-++-..+ +....++.+ .+ |+
T Consensus 253 Yi~~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~-----------~~----l~ 317 (726)
T PRK09841 253 YLQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQI-----------VN----VD 317 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH-----------HH----HH
Confidence 4556677777777777778888888888888888887777765322 111111111 11 22
Q ss_pred hHHHHHhhhhHHHHHhhhcCchhhhhHHHHHHHHHHHHHHHHHHHhh
Q 012393 107 DFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQN 153 (464)
Q Consensus 107 ~s~EQLe~k~~~Lekl~~s~~SE~~sL~eKV~sLEeQLkese~Ql~~ 153 (464)
.-+.++..+...+...-....|.+++|..++..|++++...+.++..
T Consensus 318 ~ql~~l~~~~~~l~~~~~~~hP~v~~l~~~~~~L~~~~~~l~~~~~~ 364 (726)
T PRK09841 318 NQLNELTFREAEISQLYKKDHPTYRALLEKRQTLEQERKRLNKRVSA 364 (726)
T ss_pred HHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22222233333333322335899999999999999988887766543
No 170
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=54.41 E-value=1.2e+02 Score=33.59 Aligned_cols=73 Identities=22% Similarity=0.247 Sum_probs=47.3
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhh
Q 012393 172 IESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEA 244 (464)
Q Consensus 172 IedLK~kVskAESRAe~AEskc~lLteTN~ELneEL~~Lks~~s~~~ek~~~LE~qLkese~QLqhA~As~eA 244 (464)
...|+..-+.+|++-.++|.++.+|..+=..+..|+.++|.-.-.-.+-....=+++++.+.++..|..+-+.
T Consensus 363 ~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~ 435 (493)
T KOG0804|consen 363 ADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDE 435 (493)
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667778888888999999999888888888888888531100122334455666665555555544443
No 171
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.54 E-value=1.4e+02 Score=33.01 Aligned_cols=73 Identities=30% Similarity=0.328 Sum_probs=46.9
Q ss_pred HHHHHHhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHh
Q 012393 189 AEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKS 268 (464)
Q Consensus 189 AEskc~lLteTN~ELneEL~~Lks~~s~~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~mL~stikDME~vIeDLks 268 (464)
-+..-+.+-..--.+..|+..|+..-+ .---...||++.+. | +|--.-|.+-.-.||+=|++||.
T Consensus 105 leqertq~qq~~e~~erEv~~l~~lls-r~~~~~~Lenem~k-------a-------~Ed~eKlrelv~pmekeI~elk~ 169 (542)
T KOG0993|consen 105 LEQERTQLQQNEEKLEREVKALMELLS-RGQYQLDLENEMDK-------A-------KEDEEKLRELVTPMEKEINELKK 169 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhhhhHHHHHH-------H-------HhhHHHHHHHHhhHHHHHHHHHH
Confidence 445555666666677778877776522 11124556665543 1 22222356677899999999999
Q ss_pred hhhhhhhh
Q 012393 269 KVSKAESK 276 (464)
Q Consensus 269 Kv~kaE~r 276 (464)
|+.+||-+
T Consensus 170 kl~~aE~~ 177 (542)
T KOG0993|consen 170 KLAKAEQR 177 (542)
T ss_pred HHHhHHHH
Confidence 99999976
No 172
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=51.99 E-value=3.1e+02 Score=28.91 Aligned_cols=79 Identities=23% Similarity=0.221 Sum_probs=54.5
Q ss_pred HHHHHhhhhhhHHHhHHHHh--------------hhHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHhhcchHHHHhhhhH
Q 012393 13 MLEKSLARELDLEKKISELN--------------QNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISK 78 (464)
Q Consensus 13 mLEkSlA~e~dLEkkL~es~--------------~~eeeLk~kL~~~eqE~~~lEEaa~~~~eR~~EAENasEvL~G~Sk 78 (464)
|.|+-.-|=-.|.++..+.. .....|-.-|..+.+....|.+....+-.|+-|| +|+-|
T Consensus 31 MAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~-------qGD~K 103 (319)
T PF09789_consen 31 MAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELRQKLNEA-------QGDIK 103 (319)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hchHH
Confidence 44444444455556555444 1446677778888888888888888888888775 67777
Q ss_pred HHhhhhhHHhhhccccccch
Q 012393 79 EMLGRFQIVQFNLNGSLQRE 98 (464)
Q Consensus 79 el~gkLq~~Qf~L~as~~RE 98 (464)
.++.++...+.--.|.+.|.
T Consensus 104 lLR~~la~~r~~~~~~~~~~ 123 (319)
T PF09789_consen 104 LLREKLARQRVGDEGIGARH 123 (319)
T ss_pred HHHHHHHhhhhhhccccccc
Confidence 77777777666667777665
No 173
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=51.86 E-value=1.5e+02 Score=32.45 Aligned_cols=52 Identities=37% Similarity=0.479 Sum_probs=43.1
Q ss_pred hhhhhHHHHhhHHHHHHHhH--------hhhhhhHHHHHhHHHHHhhHHHHHHHHHhhhhhhh
Q 012393 220 KVGILENQLRDLEIQLQQAK--------VSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAE 274 (464)
Q Consensus 220 k~~~LE~qLkese~QLqhA~--------As~eAs~eqQ~mL~stikDME~vIeDLksKv~kaE 274 (464)
|...||.||.+. ++||++. |+.+..+.=|+ |.-.+|++-..|-+++.++|.|
T Consensus 307 R~erLEEqLNdl-teLqQnEi~nLKqElasmeervaYQs--yERaRdIqEalEscqtrisKlE 366 (455)
T KOG3850|consen 307 RYERLEEQLNDL-TELQQNEIANLKQELASMEERVAYQS--YERARDIQEALESCQTRISKLE 366 (455)
T ss_pred HHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888876 5666554 89999998888 9999999999999999999877
No 174
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=51.66 E-value=4.4e+02 Score=30.59 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=11.8
Q ss_pred hhhHHHHHHHHHHHHhhhhhhhhHH
Q 012393 166 NEMDNFIESLKESLYGAESRAESAE 190 (464)
Q Consensus 166 sdmEnvIedLK~kVskAESRAe~AE 190 (464)
.+.+..++.++..+...+.+....+
T Consensus 420 ~~~~~~l~~~~~~~~~~~~~~~~~~ 444 (908)
T COG0419 420 EELERELEELEEEIKKLEEQINQLE 444 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445554544444443
No 175
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=51.10 E-value=1.4e+02 Score=28.64 Aligned_cols=73 Identities=22% Similarity=0.291 Sum_probs=45.1
Q ss_pred CchhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHH
Q 012393 126 KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSE 205 (464)
Q Consensus 126 ~~SE~~sL~eKV~sLEeQLkese~Ql~~akas~Ea~~~~isdmEnvIedLK~kVskAESRAe~AEskc~lLteTN~ELne 205 (464)
+.-+...+..++..|.+++......+...... |++.|..-...+.|+. ...++..|...+.+|..
T Consensus 60 ps~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~--------------i~~~~~~r~~~~eR~~-~l~~l~~l~~~~~~l~~ 124 (188)
T PF03962_consen 60 PSQAKQKRQNKLEKLQKEIEELEKKIEELEEK--------------IEEAKKGREESEEREE-LLEELEELKKELKELKK 124 (188)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHhcccccHHHHH-HHHHHHHHHHHHHHHHH
Confidence 45566666677666666666555544433333 5555444444445544 56677778888888888
Q ss_pred HHhhhhcC
Q 012393 206 EINFLKGN 213 (464)
Q Consensus 206 EL~~Lks~ 213 (464)
+|..++..
T Consensus 125 el~~~~~~ 132 (188)
T PF03962_consen 125 ELEKYSEN 132 (188)
T ss_pred HHHHHHhc
Confidence 88876665
No 176
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=50.89 E-value=2.9e+02 Score=28.25 Aligned_cols=59 Identities=14% Similarity=0.168 Sum_probs=28.4
Q ss_pred hhhhhhhhHHHHHHHhhHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 012393 296 NKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSL 354 (464)
Q Consensus 296 eELsflrskl~~LE~sL~~A~~~K~~TakdI~~~tK~i~dLV~qLa~ERErL~~Qissl 354 (464)
.+|.-++.++..++..+......|...-.+|.--.++.+.--.==..|..+|+.++..|
T Consensus 230 ~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~L 288 (325)
T PF08317_consen 230 KELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDAL 288 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 33444444445555555555555555555555444444433222234555566555555
No 177
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=49.36 E-value=2.1e+02 Score=26.06 Aligned_cols=97 Identities=24% Similarity=0.305 Sum_probs=64.6
Q ss_pred hhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHh
Q 012393 159 QTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQA 238 (464)
Q Consensus 159 Ea~~~~isdmEnvIedLK~kVskAESRAe~AEskc~lLteTN~ELneEL~~Lks~~s~~~ek~~~LE~qLkese~QLqhA 238 (464)
+...+.|+..|.-+--+|..+...+..-+.+..+..-|+..|-++.... ..+..|+.++.+++...+-+
T Consensus 19 e~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~-----------~~~~~L~~el~~l~~ry~t~ 87 (120)
T PF12325_consen 19 ERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALK-----------KEVEELEQELEELQQRYQTL 87 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHH
Confidence 3345677777888888888888888888888888888887777664432 24566777888777766666
Q ss_pred HhhhhhhHHHHHhHHHHHhhHHHHHHHH
Q 012393 239 KVSSEASQEQQSMLYSAIWDMETLIEDL 266 (464)
Q Consensus 239 ~As~eAs~eqQ~mL~stikDME~vIeDL 266 (464)
----+-.-|+=..|..-|.||-.+..+.
T Consensus 88 LellGEK~E~veEL~~Dv~DlK~myr~Q 115 (120)
T PF12325_consen 88 LELLGEKSEEVEELRADVQDLKEMYREQ 115 (120)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 5544444444445666666666554443
No 178
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=49.30 E-value=85 Score=28.83 Aligned_cols=54 Identities=17% Similarity=0.270 Sum_probs=26.6
Q ss_pred HHHhHHHHHhhhhHHHHHhhhc--------------CchhhhhHHHHHHHHHHHHHHHHHHHhhhhhc
Q 012393 104 KLGDFIEQLKAKDMVLQKLEST--------------KNSEVLTMKEKVKSLEEQLKESEIRLQNANAC 157 (464)
Q Consensus 104 KLk~s~EQLe~k~~~Lekl~~s--------------~~SE~~sL~eKV~sLEeQLkese~Ql~~akas 157 (464)
-...++++|...+....|.-+. ++.|...+...+..|.+++++.........+.
T Consensus 34 ~v~k~Ld~L~~~g~i~~K~~GKqkiY~~~Q~~~~~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~e 101 (169)
T PF07106_consen 34 AVQKALDSLVEEGKIVEKEYGKQKIYFANQDELEVPSPEELAELDAEIKELREELAELKKEVKSLEAE 101 (169)
T ss_pred HHHHHHHHHHhCCCeeeeeecceEEEeeCccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666655444443332 23445555555555555555555444443333
No 179
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=48.94 E-value=39 Score=30.01 Aligned_cols=53 Identities=19% Similarity=0.341 Sum_probs=45.8
Q ss_pred hHHHHHhhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhhhhhhhhhhHHHHHHH
Q 012393 251 MLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILES 310 (464)
Q Consensus 251 mL~stikDME~vIeDLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrskl~~LE~ 310 (464)
-||..+..||.=|..|-..+...... ..-|-|.|..|.-|-.-||.|+..++.
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~-------~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQ-------LQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 37888999998888888888766655 788999999999999999999988876
No 180
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=47.88 E-value=25 Score=36.88 Aligned_cols=54 Identities=19% Similarity=0.330 Sum_probs=0.0
Q ss_pred hhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHHHhhhhcC
Q 012393 160 TSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGN 213 (464)
Q Consensus 160 a~~~~isdmEnvIedLK~kVskAESRAe~AEskc~lLteTN~ELneEL~~Lks~ 213 (464)
+..+.++.||..++.|-+.|....++...-++.|.-++.+=.+++.+|+.|.+.
T Consensus 32 ~I~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsst 85 (326)
T PF04582_consen 32 PIRERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSST 85 (326)
T ss_dssp ------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677788888888888888888888887888777777777777777777765
No 181
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=47.77 E-value=15 Score=38.40 Aligned_cols=56 Identities=23% Similarity=0.346 Sum_probs=37.3
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhhhhhhhhhhHHHHHHHhhHHHH
Q 012393 261 TLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRAN 316 (464)
Q Consensus 261 ~vIeDLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrskl~~LE~sL~~A~ 316 (464)
.++++|.+.+..+|.|...+|+.+.-++.+.-.+...+..+.+++.+||+...+.|
T Consensus 137 ~~~~~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsRRnN 192 (370)
T PF02994_consen 137 NIDESLNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRSRRNN 192 (370)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTE
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccCCc
Confidence 34456666666667776667777777777777777888888889999988876654
No 182
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=47.42 E-value=4.4e+02 Score=31.05 Aligned_cols=61 Identities=23% Similarity=0.370 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHHHhhhh
Q 012393 132 TMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLK 211 (464)
Q Consensus 132 sL~eKV~sLEeQLkese~Ql~~akas~Ea~~~~isdmEnvIedLK~kVskAESRAe~AEskc~lLteTN~ELneEL~~Lk 211 (464)
++.+||..|++|++..=. .|-.+ +++.+.||.||..|.+|=+..+..
T Consensus 646 ~~k~KIe~L~~eIkkkIe---~av~s--------s~LK~k~E~Lk~Evaka~~~pd~~---------------------- 692 (762)
T PLN03229 646 NLQEKIESLNEEINKKIE---RVIRS--------SDLKSKIELLKLEVAKASKTPDVT---------------------- 692 (762)
T ss_pred hhHHHHHHHHHHHHHHHH---HHhcc--------hhHHHHHHHHHHHHHhcCCCCCcc----------------------
Confidence 458899999999885433 33222 467788888888885553332221
Q ss_pred cCCCCcchhhhhhHHHHhh
Q 012393 212 GNNDSNTKKVGILENQLRD 230 (464)
Q Consensus 212 s~~s~~~ek~~~LE~qLke 230 (464)
..+|++.||.|+|.
T Consensus 693 -----~k~kieal~~qik~ 706 (762)
T PLN03229 693 -----EKEKIEALEQQIKQ 706 (762)
T ss_pred -----hHHHHHHHHHHHHH
Confidence 13789999999986
No 183
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=46.85 E-value=3.5e+02 Score=28.05 Aligned_cols=134 Identities=20% Similarity=0.241 Sum_probs=64.5
Q ss_pred HHHHHhHHHHHHHHHHHHHhhcchHHHHhhhhHHHhhhhhHHhhhccccccchhH---HHHHHHhHHHHHhhhhHHHHHh
Q 012393 46 EQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESE---LKSKLGDFIEQLKAKDMVLQKL 122 (464)
Q Consensus 46 eqE~~~lEEaa~~~~eR~~EAENasEvL~G~Skel~gkLq~~Qf~L~as~~REse---LksKLk~s~EQLe~k~~~Lekl 122 (464)
.-.+.|--=.|...|==|= ...+.|+-..|...+..++.|..-....+.- +..+|..-...|...=..|..+
T Consensus 120 ~lvK~~aRl~ak~~WYeWR-----~kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~ 194 (312)
T smart00787 120 QLVKTFARLEAKKMWYEWR-----MKLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQL 194 (312)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444455666665553 3457777777777777777765555444432 2222222222222222222222
Q ss_pred h----hcCchhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHH
Q 012393 123 E----STKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEE 191 (464)
Q Consensus 123 ~----~s~~SE~~sL~eKV~sLEeQLkese~Ql~~akas~Ea~~~~isdmEnvIedLK~kVskAESRAe~AEs 191 (464)
. .+...|...+++++..+..+ +...+...+..+.++.+....|++.+.+...-++....|+.
T Consensus 195 ~~e~~~~d~~eL~~lk~~l~~~~~e-------i~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 195 EDELEDCDPTELDRAKEKLKKLLQE-------IMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 21234555555554444333 33333444444555555555555555555555555555444
No 184
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=45.09 E-value=87 Score=26.20 Aligned_cols=53 Identities=28% Similarity=0.392 Sum_probs=43.0
Q ss_pred hHHHHhhhHHHHHHHHHHHHhhhhhhhh-HHHHHHhhhhhhHHHHHHHhhhhcC
Q 012393 161 SQEQLNEMDNFIESLKESLYGAESRAES-AEEKVTQLTDTNLELSEEINFLKGN 213 (464)
Q Consensus 161 ~~~~isdmEnvIedLK~kVskAESRAe~-AEskc~lLteTN~ELneEL~~Lks~ 213 (464)
...+|+++..-|=+||-+|+=-|.|..+ +..-..-+-..|++|+-++..|+..
T Consensus 5 qe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~e 58 (75)
T PF07989_consen 5 QEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRE 58 (75)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 4557788888899999999999999985 5667777888899998888777763
No 185
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=44.93 E-value=4e+02 Score=28.08 Aligned_cols=125 Identities=22% Similarity=0.274 Sum_probs=77.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHHHhh
Q 012393 130 VLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINF 209 (464)
Q Consensus 130 ~~sL~eKV~sLEeQLkese~Ql~~akas~Ea~~~~isdmEnvIedLK~kVskAESRAe~AEskc~lLteTN~ELneEL~~ 209 (464)
.-.|+.|++.||+.-........+.+.....++++= ..+|.|-=...+.|-.....-......=++.|..-.+|+..
T Consensus 162 le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekE---qqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~ 238 (306)
T PF04849_consen 162 LEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKE---QQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITS 238 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHH---HHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458999999999876666555444443222222211 11233344455666666666667777778888889999999
Q ss_pred hhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHhhhh
Q 012393 210 LKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVS 271 (464)
Q Consensus 210 Lks~~s~~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~mL~stikDME~vIeDLksKv~ 271 (464)
|.++ +--|+.+++.+=..-++-..-..+.++-|.-|-+- +.||+.|+.
T Consensus 239 Llsq-------ivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aE-------L~elqdkY~ 286 (306)
T PF04849_consen 239 LLSQ-------IVDLQQRCKQLAAENEELQQHLQASKESQRQLQAE-------LQELQDKYA 286 (306)
T ss_pred HHHH-------HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence 9987 77788888876554444444445555555544433 556666665
No 186
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=44.81 E-value=1.2e+02 Score=27.79 Aligned_cols=36 Identities=28% Similarity=0.222 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHH---HHHHhh
Q 012393 332 LMMEMVMQLATQRELIQKQVYSLTSENKLL---VEKLQY 367 (464)
Q Consensus 332 ~i~dLV~qLa~ERErL~~Qissl~~eNkiL---~~k~k~ 367 (464)
-++.-+.++..|..-|..++.+++.||..| |.+++.
T Consensus 12 ~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~ 50 (114)
T COG4467 12 NLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRE 50 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHH
Confidence 344556677888999999999999999998 778876
No 187
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=44.68 E-value=20 Score=24.49 Aligned_cols=20 Identities=25% Similarity=0.406 Sum_probs=17.3
Q ss_pred hhhhhhhhHHHHHHHhhHHH
Q 012393 296 NKQSFMRDKIKILESSLNRA 315 (464)
Q Consensus 296 eELsflrskl~~LE~sL~~A 315 (464)
+|+.-+|.|+.+||..|...
T Consensus 1 ~E~~rlr~rI~dLer~L~~C 20 (23)
T PF04508_consen 1 REMNRLRNRISDLERQLSEC 20 (23)
T ss_pred ChHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999754
No 188
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=44.47 E-value=3.1e+02 Score=26.63 Aligned_cols=50 Identities=20% Similarity=0.340 Sum_probs=23.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHH
Q 012393 130 VLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESL 179 (464)
Q Consensus 130 ~~sL~eKV~sLEeQLkese~Ql~~akas~Ea~~~~isdmEnvIedLK~kV 179 (464)
.+++.+.-..+=+..+..+.++....+......++|.++|.-|-+|++..
T Consensus 98 LL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~ 147 (190)
T PF05266_consen 98 LLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQA 147 (190)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444444444444444444556666666666666543
No 189
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=43.09 E-value=3.3e+02 Score=28.34 Aligned_cols=97 Identities=21% Similarity=0.237 Sum_probs=51.6
Q ss_pred HHhhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHhhHHHHHHHhHHHH
Q 012393 255 AIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMM 334 (464)
Q Consensus 255 tikDME~vIeDLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrskl~~LE~sL~~A~~~K~~TakdI~~~tK~i~ 334 (464)
.+.||-.-.-++..|+-||==- -.-|--...-|.-++.-|..+++++|..+....-+-..-.
T Consensus 78 s~r~lk~~l~evEekyrkAMv~-------naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~----------- 139 (302)
T PF09738_consen 78 SLRDLKDSLAEVEEKYRKAMVS-------NAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKI----------- 139 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHHH-------HhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 4677777777777777766421 2223333333445566666666666666655443332222
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhc----CCCCCcee
Q 012393 335 EMVMQLATQRELIQKQVYSLTSENKLLVEKLQYS----GKSSSATM 376 (464)
Q Consensus 335 dLV~qLa~ERErL~~Qissl~~eNkiL~~k~k~~----~~~~~~~~ 376 (464)
.|.+|++..+..|..+-..|-..+++. .+|+-+..
T Consensus 140 -------~elEr~K~~~d~L~~e~~~Lre~L~~rdeli~khGlVlv 178 (302)
T PF09738_consen 140 -------RELERQKRAHDSLREELDELREQLKQRDELIEKHGLVLV 178 (302)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCeeeC
Confidence 344555555555555555555555433 44555444
No 190
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=42.71 E-value=6.2e+02 Score=29.72 Aligned_cols=193 Identities=20% Similarity=0.233 Sum_probs=103.8
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHH-------hhhhhchhhhHHHHh-------hhHHHHHHHHHHHHhh---hhhhhhH
Q 012393 127 NSEVLTMKEKVKSLEEQLKESEIRL-------QNANACFQTSQEQLN-------EMDNFIESLKESLYGA---ESRAESA 189 (464)
Q Consensus 127 ~SE~~sL~eKV~sLEeQLkese~Ql-------~~akas~Ea~~~~is-------dmEnvIedLK~kVskA---ESRAe~A 189 (464)
--++.+|..|+..||+.|.+.+.+. .-+....+....+++ +--++++.|+.-|-.. +.+.+.-
T Consensus 161 q~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR~YvGeq~p~~~~~~~w 240 (739)
T PF07111_consen 161 QEALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEAQVTLVEQLRKYVGEQVPPEVHSQAW 240 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhCCcccccHHH
Confidence 3678899999999999999988863 223333333333333 3334577777777443 3344444
Q ss_pred HHHHHhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhh------hhHHHHHhHHH---------
Q 012393 190 EEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSE------ASQEQQSMLYS--------- 254 (464)
Q Consensus 190 Eskc~lLteTN~ELneEL~~Lks~~s~~~ek~~~LE~qLkese~QLqhA~As~e------As~eqQ~mL~s--------- 254 (464)
+.+-..|-+|=..|.++=+.|.....--.=+|++|.-=|.-=+.-|-+=+--.+ +.+- |++|..
T Consensus 241 e~Er~~L~~tVq~L~edR~~L~~T~ELLqVRvqSLt~IL~LQEeEL~~Kvqp~d~Le~e~~~K~-q~LL~~WREKVFaLm 319 (739)
T PF07111_consen 241 EPEREELLETVQHLQEDRDALQATAELLQVRVQSLTDILTLQEEELCRKVQPSDPLEPEFSRKC-QQLLSRWREKVFALM 319 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCchhHHHH-HHHHHHHHHHHHHHH
Confidence 556677777777777776665554110122333333333222222222111111 2222 333331
Q ss_pred ---HHhhHH--HHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhhhhhhhhhhHHHHHHHhhHHHHHHHH
Q 012393 255 ---AIWDME--TLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKA 320 (464)
Q Consensus 255 ---tikDME--~vIeDLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrskl~~LE~sL~~A~~~K~ 320 (464)
+..|++ +-+..|+.+|+-.+.+..+...+-++|..+==+=.-|+.+=|..-++|...|..|..+..
T Consensus 320 VQLkaQeleh~~~~~qL~~qVAsLQeev~sq~qEqaiLq~SLqDK~AElevERv~sktLQ~ELsrAqea~~ 390 (739)
T PF07111_consen 320 VQLKAQELEHRDSVKQLRGQVASLQEEVASQQQEQAILQHSLQDKAAELEVERVGSKTLQAELSRAQEARR 390 (739)
T ss_pred HHhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 333444 567777777777777766666666665544322233444445555567777777765443
No 191
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=42.41 E-value=27 Score=27.39 Aligned_cols=29 Identities=28% Similarity=0.308 Sum_probs=16.6
Q ss_pred hhhhhccchhhhhhhhhhhhHHHHHHHhh
Q 012393 284 CIVLSEDNFELKNKQSFMRDKIKILESSL 312 (464)
Q Consensus 284 c~~LsEtN~eLneELsflrskl~~LE~sL 312 (464)
+..|...|-.|..++..|...+..|.+.+
T Consensus 35 ~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 35 VEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33444556666666666666666665544
No 192
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=42.22 E-value=5.9e+02 Score=29.32 Aligned_cols=130 Identities=16% Similarity=0.151 Sum_probs=75.0
Q ss_pred hhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHH---HHhhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhhh
Q 012393 220 KVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYS---AIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKN 296 (464)
Q Consensus 220 k~~~LE~qLkese~QLqhA~As~eAs~eqQ~mL~s---tikDME~vIeDLksKv~kaE~rae~~E~kc~~LsEtN~eLne 296 (464)
+...++..+.....+|+|..+..+.-..+..-.-. .+.|+..-..+++.++. .++..|...-+.
T Consensus 176 ~~~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~-------~l~~~~~~~~~~------ 242 (670)
T KOG0239|consen 176 ESLKLESDLGDLVTELEHVTNSISELESVLKSAQEERRVLADSLGNYADLRRNIK-------PLEGLESTIKKK------ 242 (670)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhHHHhhh-------hhhhhhhHHHHH------
Confidence 34566677777777777777666654321111111 11111111223333333 333445555444
Q ss_pred hhhhhhhHHHHHHHhhHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 012393 297 KQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEK 364 (464)
Q Consensus 297 ELsflrskl~~LE~sL~~A~~~K~~TakdI~~~tK~i~dLV~qLa~ERErL~~Qissl~~eNkiL~~k 364 (464)
+.-++.++..|...+..++..-...-++..--.+.+..++.+|+..++.++.+. .--.+|+-|-..
T Consensus 243 -i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~-~e~~~r~kL~N~ 308 (670)
T KOG0239|consen 243 -IQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKK-KEKEERRKLHNE 308 (670)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 455566666777777777777667777777667777777888888888888777 666666666333
No 193
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=41.29 E-value=6.8e+02 Score=29.73 Aligned_cols=141 Identities=17% Similarity=0.157 Sum_probs=70.7
Q ss_pred HHHHHHHHhhcchHHHHhhhhHHHhhhhhHHhhhccccccchhHHHHHHHhHHHHHhhh---h--HHHHHhhhc------
Q 012393 57 EVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAK---D--MVLQKLEST------ 125 (464)
Q Consensus 57 ~~~~eR~~EAENasEvL~G~Skel~gkLq~~Qf~L~as~~REseLksKLk~s~EQLe~k---~--~~Lekl~~s------ 125 (464)
.++.-|..++|.-.+.+.-.=.-+.--+..+--.|-+...| ++|..| -|+..+. + ..-+.|+.+
T Consensus 405 ~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~-DeLaEk----dE~I~~lm~EGEkLSK~ql~qs~iIkKL 479 (961)
T KOG4673|consen 405 EEYHQRVATLEKKVQALTKERDALRREQKSLKKELAAALLK-DELAEK----DEIINQLMAEGEKLSKKQLAQSAIIKKL 479 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhh-HHHHHH----HHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 44556667777666666554444444444444444444443 333222 2222221 1 111223333
Q ss_pred --CchhhhhHHHHHHHHHHHHHHHHHHHhhhhhch------hh-hHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhh
Q 012393 126 --KNSEVLTMKEKVKSLEEQLKESEIRLQNANACF------QT-SQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQL 196 (464)
Q Consensus 126 --~~SE~~sL~eKV~sLEeQLkese~Ql~~akas~------Ea-~~~~isdmEnvIedLK~kVskAESRAe~AEskc~lL 196 (464)
++-|.-+|-+|... ++...+...++.+... +. .++.|--|......-|+..++..++++--+++.--+
T Consensus 480 RAk~ke~etl~~K~ge---~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~ 556 (961)
T KOG4673|consen 480 RAKIKEAETLEEKKGE---LITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALAE 556 (961)
T ss_pred HHHhhhhhHHHHHhhh---HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 24444455554432 3333333333333322 22 234555666666666777777777777778887777
Q ss_pred hhhhHHHHH
Q 012393 197 TDTNLELSE 205 (464)
Q Consensus 197 teTN~ELne 205 (464)
-.||..+..
T Consensus 557 qat~d~a~~ 565 (961)
T KOG4673|consen 557 QATNDEARS 565 (961)
T ss_pred HHhhhhhhh
Confidence 778877766
No 194
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=41.24 E-value=1.7e+02 Score=24.30 Aligned_cols=22 Identities=36% Similarity=0.444 Sum_probs=9.1
Q ss_pred hhHHHHHHHHHHHHhhhhhhhh
Q 012393 167 EMDNFIESLKESLYGAESRAES 188 (464)
Q Consensus 167 dmEnvIedLK~kVskAESRAe~ 188 (464)
++|..|.+++.++.+++...++
T Consensus 44 e~e~~~~~l~~~~~~~e~~~~~ 65 (74)
T PF12329_consen 44 ELEKQIKELKKKLEELEKELES 65 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443333
No 195
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=40.43 E-value=1.6e+02 Score=28.24 Aligned_cols=59 Identities=20% Similarity=0.331 Sum_probs=29.6
Q ss_pred hhhhhhhhhhhHHHHHHHhhHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012393 293 ELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTS 356 (464)
Q Consensus 293 eLneELsflrskl~~LE~sL~~A~~~K~~TakdI~~~tK~i~dLV~qLa~ERErL~~Qissl~~ 356 (464)
+|..++..++.++..++..+..+...+..| .-|+..+.. ..+|..+...|+.++..+.+
T Consensus 73 ~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~----~eR~~~l~~-l~~l~~~~~~l~~el~~~~~ 131 (188)
T PF03962_consen 73 KLQKEIEELEKKIEELEEKIEEAKKGREES----EEREELLEE-LEELKKELKELKKELEKYSE 131 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccc----HHHHHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 444555555555556666655554444444 334443332 24455555555555554433
No 196
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=40.40 E-value=5.4e+02 Score=28.30 Aligned_cols=69 Identities=19% Similarity=0.327 Sum_probs=33.2
Q ss_pred HHHhhhhHHHHHhhhc---CchhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHH
Q 012393 110 EQLKAKDMVLQKLEST---KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKES 178 (464)
Q Consensus 110 EQLe~k~~~Lekl~~s---~~SE~~sL~eKV~sLEeQLkese~Ql~~akas~Ea~~~~isdmEnvIedLK~k 178 (464)
.+|++-...++.+..+ ..-+...|..-++++|..+...+-|+.............|++++.-++.|..+
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q 109 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQ 109 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHH
Confidence 4555544555544443 23344445555555555555555554444444444444555555555444433
No 197
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=40.21 E-value=84 Score=26.29 Aligned_cols=20 Identities=30% Similarity=0.712 Sum_probs=11.4
Q ss_pred hhccchhhhhhhhhhhhHHH
Q 012393 287 LSEDNFELKNKQSFMRDKIK 306 (464)
Q Consensus 287 LsEtN~eLneELsflrskl~ 306 (464)
|...|+-|.-.+-||+.++.
T Consensus 12 L~KENF~LKLrI~fLee~l~ 31 (75)
T PF07989_consen 12 LKKENFNLKLRIYFLEERLQ 31 (75)
T ss_pred HHHhhhhHHHHHHHHHHHHH
Confidence 34456666556666665544
No 198
>PRK09343 prefoldin subunit beta; Provisional
Probab=40.13 E-value=2.3e+02 Score=25.30 Aligned_cols=108 Identities=17% Similarity=0.208 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHH-----HHHhhhhhhhhHHHHHHhhhhhhHHHH
Q 012393 130 VLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKE-----SLYGAESRAESAEEKVTQLTDTNLELS 204 (464)
Q Consensus 130 ~~sL~eKV~sLEeQLkese~Ql~~akas~Ea~~~~isdmEnvIedLK~-----kVskAESRAe~AEskc~lLteTN~ELn 204 (464)
.+.|..++..+=.++..+.-++..+.........+++..+.++++|.. +|++.=-+.---. -..+....|+
T Consensus 2 ~~~~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~q----d~~e~~~~l~ 77 (121)
T PRK09343 2 AENIPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKV----DKTKVEKELK 77 (121)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhc----cHHHHHHHHH
Q ss_pred HHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhh
Q 012393 205 EEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVS 241 (464)
Q Consensus 205 eEL~~Lks~~s~~~ek~~~LE~qLkese~QLqhA~As 241 (464)
+.+.++.++-..-.++...|++++.+.+.+++.+.++
T Consensus 78 ~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~ 114 (121)
T PRK09343 78 ERKELLELRSRTLEKQEKKLREKLKELQAKINEMLSK 114 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 199
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=39.90 E-value=73 Score=34.13 Aligned_cols=86 Identities=20% Similarity=0.228 Sum_probs=57.1
Q ss_pred hhhhhhhccchhhhhhhhhhhhHHHHHHHhhHH-HHHHHHhhHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 012393 282 EQCIVLSEDNFELKNKQSFMRDKIKILESSLNR-ANIEKAASAKEVNHR-TKLMMEMVMQLATQRELIQKQVYSLTSENK 359 (464)
Q Consensus 282 ~kc~~LsEtN~eLneELsflrskl~~LE~sL~~-A~~~K~~TakdI~~~-tK~i~dLV~qLa~ERErL~~Qissl~~eNk 359 (464)
++...|-+.|..|.+|.+-|+.+|+.||+---+ --.+|+.|...+--+ .|.|-.+..-..++|.-+..-=+-||+=--
T Consensus 32 ~e~~aLr~EN~~LKkEN~~Lk~eVerLE~e~l~s~V~E~vet~dv~~d~i~Kimnk~Re~vlfq~d~~~ld~~lLARve~ 111 (420)
T PF07407_consen 32 DENFALRMENHSLKKENNDLKIEVERLENEMLRSHVCEDVETNDVIYDKIVKIMNKMRELVLFQRDDLKLDSVLLARVET 111 (420)
T ss_pred hhhhhHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccccccHHHHHHHHH
Confidence 457889999999999999999999999876653 346778886443333 455544433333455555555555666666
Q ss_pred HHHHHHhh
Q 012393 360 LLVEKLQY 367 (464)
Q Consensus 360 iL~~k~k~ 367 (464)
+|.-|-+.
T Consensus 112 LlRlK~e~ 119 (420)
T PF07407_consen 112 LLRLKDEQ 119 (420)
T ss_pred HHHhhhhc
Confidence 66555554
No 200
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=38.88 E-value=1.1e+02 Score=28.08 Aligned_cols=53 Identities=23% Similarity=0.349 Sum_probs=41.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhc----hhhhHHHHhhhHHHHHHHHHHHHhh
Q 012393 130 VLTMKEKVKSLEEQLKESEIRLQNANAC----FQTSQEQLNEMDNFIESLKESLYGA 182 (464)
Q Consensus 130 ~~sL~eKV~sLEeQLkese~Ql~~akas----~Ea~~~~isdmEnvIedLK~kVskA 182 (464)
..+|..+|+.|.+-+|+|+-......++ .++.+..+.++|..+..+|.+|+.-
T Consensus 10 ~~~l~~~v~~lRed~r~SEdrsa~SRa~mhrRlDElV~Rv~~lEs~~~~lk~dVsem 66 (112)
T PF07439_consen 10 LGTLNAEVKELREDIRRSEDRSAASRASMHRRLDELVERVTTLESSVSTLKADVSEM 66 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHhhHHhc
Confidence 4578889999999999999876554444 3667888889999999999888653
No 201
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=38.85 E-value=2.1e+02 Score=23.77 Aligned_cols=46 Identities=20% Similarity=0.234 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhh
Q 012393 139 SLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAES 184 (464)
Q Consensus 139 sLEeQLkese~Ql~~akas~Ea~~~~isdmEnvIedLK~kVskAES 184 (464)
+|++.|++=+.|++.....-+..-.+.-.+.++|..|+.++...|.
T Consensus 2 sl~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~ 47 (74)
T PF12329_consen 2 SLEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEK 47 (74)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 5677777777777766666555444555677777777777666554
No 202
>PRK11519 tyrosine kinase; Provisional
Probab=38.75 E-value=6.1e+02 Score=28.79 Aligned_cols=104 Identities=17% Similarity=0.169 Sum_probs=53.0
Q ss_pred hHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHhhcchHHHHhhhhHH------HhhhhhHHhhhccccccchhHHHHHHHh
Q 012393 34 NEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKE------MLGRFQIVQFNLNGSLQRESELKSKLGD 107 (464)
Q Consensus 34 ~eeeLk~kL~~~eqE~~~lEEaa~~~~eR~~EAENasEvL~G~Ske------l~gkLq~~Qf~L~as~~REseLksKLk~ 107 (464)
++..+..|.-.+.+-..|+++-...+-.++-+||.+.+-++...+. ....++.+ ..++.
T Consensus 254 i~~~~~~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~vd~~~ea~~~l~~~---------------~~l~~ 318 (719)
T PRK11519 254 LEQNIERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSM---------------VNIDA 318 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHH---------------HHHHH
Confidence 4444455555555555666666666666666666666555542221 11111111 11222
Q ss_pred HHHHHhhhhHHHHHhhhcCchhhhhHHHHHHHHHHHHHHHHHHHh
Q 012393 108 FIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQ 152 (464)
Q Consensus 108 s~EQLe~k~~~Lekl~~s~~SE~~sL~eKV~sLEeQLkese~Ql~ 152 (464)
.+-++..+...+...-..+.|.+.+|..+...|+.++...+.+..
T Consensus 319 ql~~l~~~~~~l~~~y~~~hP~v~~l~~~~~~L~~~~~~l~~~~~ 363 (719)
T PRK11519 319 QLNELTFKEAEISKLYTKEHPAYRTLLEKRKALEDEKAKLNGRVT 363 (719)
T ss_pred HHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222223333333222222578899998888888888777766544
No 203
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=38.43 E-value=1.9e+02 Score=22.40 Aligned_cols=82 Identities=24% Similarity=0.353 Sum_probs=47.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhh----hHHHHH
Q 012393 130 VLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDT----NLELSE 205 (464)
Q Consensus 130 ~~sL~eKV~sLEeQLkese~Ql~~akas~Ea~~~~isdmEnvIedLK~kVskAESRAe~AEskc~lLteT----N~ELne 205 (464)
.+.....+..+..|+.+.+..+..... ......+..+-.-...++..+...+.+.+.....+..|..+ ...+..
T Consensus 3 ~~~f~~~~~~l~~Wl~~~e~~l~~~~~--~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~ 80 (105)
T PF00435_consen 3 LQQFQQEADELLDWLQETEAKLSSSEP--GSDLEELEEQLKKHKELQEEIESRQERLESLNEQAQQLIDSGPEDSDEIQE 80 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSCTH--SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCC--CCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHH
Confidence 345677888999999999888854433 22223333333344455555555555556666666666444 345555
Q ss_pred HHhhhhcC
Q 012393 206 EINFLKGN 213 (464)
Q Consensus 206 EL~~Lks~ 213 (464)
.+..|..+
T Consensus 81 ~~~~l~~~ 88 (105)
T PF00435_consen 81 KLEELNQR 88 (105)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555553
No 204
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=38.00 E-value=42 Score=35.16 Aligned_cols=56 Identities=29% Similarity=0.359 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHH
Q 012393 170 NFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLE 232 (464)
Q Consensus 170 nvIedLK~kVskAESRAe~AEskc~lLteTN~ELneEL~~Lks~~s~~~ek~~~LE~qLkese 232 (464)
+++.+|...|..+|.|....+..+..++.+...+...+..|.+ ++.-||++.+..+
T Consensus 137 ~~~~~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~-------kl~DlEnrsRRnN 192 (370)
T PF02994_consen 137 NIDESLNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLED-------KLDDLENRSRRNN 192 (370)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHTTTE
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHH-------HHHHHHhhccCCc
Confidence 3445677888888888888888888888887777777776665 3677777766543
No 205
>PF12001 DUF3496: Domain of unknown function (DUF3496); InterPro: IPR021885 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 110 amino acids in length.
Probab=37.91 E-value=2.1e+02 Score=26.01 Aligned_cols=77 Identities=21% Similarity=0.281 Sum_probs=43.4
Q ss_pred hhHHHHHHHHHhhhhhhhh-hhhhhhhhhhhhhccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHhhHHHHHHHhHHHHH
Q 012393 257 WDMETLIEDLKSKVSKAES-KTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMME 335 (464)
Q Consensus 257 kDME~vIeDLksKv~kaE~-rae~~E~kc~~LsEtN~eLneELsflrskl~~LE~sL~~A~~~K~~TakdI~~~tK~i~d 335 (464)
+.||.-|.||.++++|..+ ..|+ +. -||--|+.- .+|. .....+-.+.+.-.++-+.+
T Consensus 3 sQmElrIkdLeselsk~Ktsq~d~--------~~------~eLEkYkql--y~eE-----lk~r~SLs~kL~ktnerLae 61 (111)
T PF12001_consen 3 SQMELRIKDLESELSKMKTSQEDS--------NK------TELEKYKQL--YLEE-----LKLRKSLSNKLNKTNERLAE 61 (111)
T ss_pred hHHHHHHHHHHHHHHHhHhHhhhh--------hH------HHHHHHHHH--HHHH-----HHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999883 2111 11 122223222 1111 11111113334444566777
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 012393 336 MVMQLATQRELIQKQVYSL 354 (464)
Q Consensus 336 LV~qLa~ERErL~~Qissl 354 (464)
.-++|-.|+|+=.+-++++
T Consensus 62 vstkLl~Ekeq~rs~lstl 80 (111)
T PF12001_consen 62 VSTKLLVEKEQNRSLLSTL 80 (111)
T ss_pred HhhHHHHHHHhcccccccc
Confidence 7888888888877767666
No 206
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=36.88 E-value=56 Score=34.43 Aligned_cols=105 Identities=14% Similarity=0.210 Sum_probs=10.0
Q ss_pred HHHHHHHhhcchHHHHhhhhHHHhhhhhHHhhhccccccchhHHHHHHHhHHHHHhhhhHHHHHhhhcCchhhhhHHHHH
Q 012393 58 VVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKV 137 (464)
Q Consensus 58 ~~~eR~~EAENasEvL~G~Skel~gkLq~~Qf~L~as~~REseLksKLk~s~EQLe~k~~~Lekl~~s~~SE~~sL~eKV 137 (464)
.+++|+..=|.+..-|.+.-..+.+++..++.+|+....-=+++..-|... .+.+.+|+..|
T Consensus 32 ~I~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sL------------------sstV~~lq~Sl 93 (326)
T PF04582_consen 32 PIRERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSL------------------SSTVTSLQSSL 93 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHH
Confidence 345555555555555555555555555555555554433333333333222 24444555555
Q ss_pred HHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHH
Q 012393 138 KSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLY 180 (464)
Q Consensus 138 ~sLEeQLkese~Ql~~akas~Ea~~~~isdmEnvIedLK~kVs 180 (464)
..|+.-+...-..+.....+....+..++.|..-|-.||..|+
T Consensus 94 ~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVS 136 (326)
T PF04582_consen 94 SSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVS 136 (326)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhh
Confidence 5555444444333333333333344455555555555555553
No 207
>PF13514 AAA_27: AAA domain
Probab=36.78 E-value=8e+02 Score=29.29 Aligned_cols=16 Identities=25% Similarity=0.324 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHhhhhh
Q 012393 170 NFIESLKESLYGAESR 185 (464)
Q Consensus 170 nvIedLK~kVskAESR 185 (464)
..+..|+..+..+..+
T Consensus 784 ~~~~~L~~~l~~a~~~ 799 (1111)
T PF13514_consen 784 EALEALRARLEEAREA 799 (1111)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555555555443
No 208
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=36.29 E-value=2.6e+02 Score=28.03 Aligned_cols=67 Identities=19% Similarity=0.184 Sum_probs=51.7
Q ss_pred hhccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012393 287 LSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSE 357 (464)
Q Consensus 287 LsEtN~eLneELsflrskl~~LE~sL~~A~~~K~~TakdI~~~tK~i~dLV~qLa~ERErL~~Qissl~~e 357 (464)
|-+.|..+++++.-++.+++..+.+|..|...+++=-|+. .-+.+=-..|..|-++|+.||-+-+++
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~----e~~~~EydrLlee~~~Lq~~i~~~~~k 215 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQS----EGLQDEYDRLLEEYSKLQEQIESGGKK 215 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHcccHHHHHHHHHHHHHHHHhccCCC
Confidence 7888999999999999999999999999987766544433 334445567778888888888765543
No 209
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=36.28 E-value=4.2e+02 Score=25.86 Aligned_cols=110 Identities=26% Similarity=0.394 Sum_probs=66.0
Q ss_pred HhhhhHHHHHhhhcCchhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHH
Q 012393 112 LKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEE 191 (464)
Q Consensus 112 Le~k~~~Lekl~~s~~SE~~sL~eKV~sLEeQLkese~Ql~~akas~Ea~~~~isdmEnvIedLK~kVskAESRAe~AEs 191 (464)
|.+|...++.|+. |+.....-|..--..|..++.-...+.........++..|...++..+..+..++..+..+-.
T Consensus 62 L~GKq~iveqLe~----ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~ 137 (188)
T PF05335_consen 62 LAGKQQIVEQLEQ----EVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQ 137 (188)
T ss_pred HHhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444443 223333334444444455554455555555556778899999999999999999988877643
Q ss_pred HHHhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhH
Q 012393 192 KVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAK 239 (464)
Q Consensus 192 kc~lLteTN~ELneEL~~Lks~~s~~~ek~~~LE~qLkese~QLqhA~ 239 (464)
+|.+.-..|-. --.|++.|.++|......++..+
T Consensus 138 ----------el~eK~qLLea----Ak~Rve~L~~QL~~Ar~D~~~tk 171 (188)
T PF05335_consen 138 ----------ELAEKTQLLEA----AKRRVEELQRQLQAARADYEKTK 171 (188)
T ss_pred ----------HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444222222 12468888888887777766655
No 210
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=35.50 E-value=4.8e+02 Score=26.28 Aligned_cols=15 Identities=7% Similarity=0.271 Sum_probs=5.9
Q ss_pred hhhhhhhhHHHHHHH
Q 012393 296 NKQSFMRDKIKILES 310 (464)
Q Consensus 296 eELsflrskl~~LE~ 310 (464)
.++..++.++..++.
T Consensus 253 ~~l~~~~~~l~~~~~ 267 (423)
T TIGR01843 253 ARLAELRERLNKARD 267 (423)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444443333
No 211
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.46 E-value=7.5e+02 Score=28.52 Aligned_cols=123 Identities=28% Similarity=0.333 Sum_probs=75.7
Q ss_pred HhHHHHHhhhh-----HHHHHhhhcCchhhhhHHHHHHHHHHHHHHHHHHHh-------hhhhchhhhHHHHhhhHHHHH
Q 012393 106 GDFIEQLKAKD-----MVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQ-------NANACFQTSQEQLNEMDNFIE 173 (464)
Q Consensus 106 k~s~EQLe~k~-----~~Lekl~~s~~SE~~sL~eKV~sLEeQLkese~Ql~-------~akas~Ea~~~~isdmEnvIe 173 (464)
+.-++.|++.+ --++++++- .-|.+-|-+||..|-.-+.+-+.++. +.+++-.--.+++++++-.+|
T Consensus 312 er~IerLkeqr~rderE~~EeIe~~-~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalE 390 (654)
T KOG4809|consen 312 ERIIERLKEQRERDERERLEEIESF-RKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALE 390 (654)
T ss_pred HHHHHHhcchhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Confidence 45555555432 234556555 67888999999999777777666643 222332334567777777777
Q ss_pred HHHHHHHhhhhhhhhH------------------------------HHHHHhhhhhhHHHHHHHhhhhcCCCCcchhhhh
Q 012393 174 SLKESLYGAESRAESA------------------------------EEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGI 223 (464)
Q Consensus 174 dLK~kVskAESRAe~A------------------------------Eskc~lLteTN~ELneEL~~Lks~~s~~~ek~~~ 223 (464)
.=|+++++-|+..-.| -.+.--+++-|.++-.+...+|.. ...|.+.
T Consensus 391 qkkEec~kme~qLkkAh~~~ddar~~pe~~d~i~~le~e~~~y~de~~kaqaevdrlLeilkeveneKnD---kdkkiae 467 (654)
T KOG4809|consen 391 QKKEECSKMEAQLKKAHNIEDDARMNPEFADQIKQLEKEASYYRDECGKAQAEVDRLLEILKEVENEKND---KDKKIAE 467 (654)
T ss_pred HHHHHHHHHHHHHHHHHHhhHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc---ccchhhh
Confidence 7776666554432211 123334667777887787777776 4577788
Q ss_pred hHHHHhhHH
Q 012393 224 LENQLRDLE 232 (464)
Q Consensus 224 LE~qLkese 232 (464)
||++.+.-.
T Consensus 468 ler~~kdqn 476 (654)
T KOG4809|consen 468 LERHMKDQN 476 (654)
T ss_pred cCchhhhhh
Confidence 887766543
No 212
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=34.56 E-value=3.2e+02 Score=30.70 Aligned_cols=91 Identities=23% Similarity=0.296 Sum_probs=53.0
Q ss_pred hHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHhh----HHHHHHHhHHH
Q 012393 258 DMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAAS----AKEVNHRTKLM 333 (464)
Q Consensus 258 DME~vIeDLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrskl~~LE~sL~~A~~~K~~T----akdI~~~tK~i 333 (464)
+-..=|++|-++...+++++-+....|-.|...=.-..++...+...+......++....+...| -.+|..-+.-+
T Consensus 417 ~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHL 496 (518)
T PF10212_consen 417 YYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMSEHL 496 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34467899999999999999999999987765422222222233333333333333333333333 34555555555
Q ss_pred HHHHHHHHHHHHHHH
Q 012393 334 MEMVMQLATQRELIQ 348 (464)
Q Consensus 334 ~dLV~qLa~ERErL~ 348 (464)
-.|.-||+..++.++
T Consensus 497 asmNeqL~~Q~eeI~ 511 (518)
T PF10212_consen 497 ASMNEQLAKQREEIQ 511 (518)
T ss_pred HHHHHHHHHHHHHHH
Confidence 566666666665543
No 213
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=33.44 E-value=5.6e+02 Score=26.51 Aligned_cols=144 Identities=20% Similarity=0.196 Sum_probs=75.2
Q ss_pred HHhhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHhhHHHHHHHhHHHH
Q 012393 255 AIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMM 334 (464)
Q Consensus 255 tikDME~vIeDLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrskl~~LE~sL~~A~~~K~~TakdI~~~tK~i~ 334 (464)
...||-..-+|+|.|+...-. .|-+|-+|+.-+.++++.++..|.... .-+-.++
T Consensus 129 ~~~d~ke~~ee~kekl~E~~~--------------EkeeL~~eleele~e~ee~~erlk~le-----------~E~s~Le 183 (290)
T COG4026 129 EYMDLKEDYEELKEKLEELQK--------------EKEELLKELEELEAEYEEVQERLKRLE-----------VENSRLE 183 (290)
T ss_pred hhhHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHH
Confidence 356888888999998874332 233444444444444444443333322 2233455
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhh---------HHHHHHhhcCCCCCceecccCCCCCccccccCCCCCCCccccchhh
Q 012393 335 EMVMQLATQRELIQKQVYSLTSENK---------LLVEKLQYSGKSSSATMYNAGDTDDKELLINPTNNLAGATVKTSED 405 (464)
Q Consensus 335 dLV~qLa~ERErL~~Qissl~~eNk---------iL~~k~k~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~ 405 (464)
++...|-.|..+|....+-|-.+=- +.-+++...+++.--.+|- -+.+.+...|. -+...-.++.-+|
T Consensus 184 E~~~~l~~ev~~L~~r~~ELe~~~El~e~~~i~dl~~et~~l~p~die~~~~~-~~~~e~e~~i~--lg~~~iaapsREd 260 (290)
T COG4026 184 EMLKKLPGEVYDLKKRWDELEPGVELPEEELISDLVKETLNLAPKDIEGQGYI-YAEDEKEVEIL--LGTVYIAAPSRED 260 (290)
T ss_pred HHHHhchhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhccCchhccceeee-eccccccccee--eeeeeeecCchHH
Confidence 6666677777777777766654411 1122333323222222222 11222222111 1223445677899
Q ss_pred hhhHHhhhhhcccccceeeec
Q 012393 406 AVSLMKSVQAGTHLNICRIYT 426 (464)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~ 426 (464)
||..++-|+.++.+-+--|..
T Consensus 261 ave~l~iik~a~~~v~~E~de 281 (290)
T COG4026 261 AVEELEIIKEAIEEVIPEIDE 281 (290)
T ss_pred HHHHHHHHHHHHHHhcccccc
Confidence 999999999887766554443
No 214
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=33.16 E-value=5.6e+02 Score=26.40 Aligned_cols=235 Identities=20% Similarity=0.282 Sum_probs=0.0
Q ss_pred HHHhhhcCchhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHH-Hhhh
Q 012393 119 LQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKV-TQLT 197 (464)
Q Consensus 119 Lekl~~s~~SE~~sL~eKV~sLEeQLkese~Ql~~akas~Ea~~~~isdmEnvIedLK~kVskAESRAe~AEskc-~lLt 197 (464)
|.||.++ ..+|..|+.++....-+|.+........-.....-......-...+......+.....-+..--..| .-|.
T Consensus 7 L~KL~et-~~~V~~m~~~L~~~~~~L~~k~~e~e~ll~~i~~~~~~a~~~~~~~~~ee~~~~~~~~ei~~~~~~a~~~L~ 85 (344)
T PF12777_consen 7 LDKLKET-EEQVEEMQEELEEKQPELEEKQKEAEELLEEIEKEQEEAEKKKAIVEEEEEEAEKQAKEIEEIKEEAEEELA 85 (344)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhHHHHH-----------HHhhhhcCCCCc-------------------------------------------------
Q 012393 198 DTNLELSE-----------EINFLKGNNDSN------------------------------------------------- 217 (464)
Q Consensus 198 eTN~ELne-----------EL~~Lks~~s~~------------------------------------------------- 217 (464)
+..+.|.+ .|..+|+-+...
T Consensus 86 ~a~P~L~~A~~al~~l~k~di~Eiks~~~PP~~V~~V~~aV~iLl~~~~~~~k~~~W~~ak~~l~~~~~Fl~~L~~fd~~ 165 (344)
T PF12777_consen 86 EAEPALEEAQEALKSLDKSDISEIKSYANPPEAVKLVMEAVCILLGPKGKLPKDTSWESAKKLLSDSDNFLQRLKNFDKD 165 (344)
T ss_dssp HHHHHHHHHHHHHHCS-HHHHHHHHHSSS--HHHHHHHHHHHHHTT-S-SEE---HHHHHHCHHCSSTTHHHHHHHS-GG
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHhhCCCcHHHHHHHHHHhhHHhccccccccccHHHHHHHHHhHHHHHHHHHhhccc
Q ss_pred ---chhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHH------HHHHHHHhhhhhhhhhhhhhhhhhhhhh
Q 012393 218 ---TKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDME------TLIEDLKSKVSKAESKTESVEEQCIVLS 288 (464)
Q Consensus 218 ---~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~mL~stikDME------~vIeDLksKv~kaE~rae~~E~kc~~Ls 288 (464)
...+..|.+-+..-+..-+.+...+-|-.- |+.=+.-|- ..|+-++.++..++.+.+.++.+-.
T Consensus 166 ~i~~~~~~~l~~~~~~p~F~~e~v~~~S~Aa~~----Lc~WV~A~~~Y~~v~~~V~P~~~~l~~a~~~l~~~~~~L~--- 238 (344)
T PF12777_consen 166 NIPEATIKKLKKYLKNPDFNPEKVRKASKAAGS----LCKWVRAMVKYYEVNKEVEPKRQKLEEAEAELEEAEEQLA--- 238 (344)
T ss_dssp G--HHHHHHHHCTTTSTTSSHHHHHHH-TTHHH----HHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHH---
T ss_pred cccHHHHHHHHHHhcCCCCCHHHHHHHhhcchH----HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH---
Q ss_pred ccchhhhhhhhhhhhHHHHHHHhhHHHHHHHH---hhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 012393 289 EDNFELKNKQSFMRDKIKILESSLNRANIEKA---ASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKL 365 (464)
Q Consensus 289 EtN~eLneELsflrskl~~LE~sL~~A~~~K~---~TakdI~~~tK~i~dLV~qLa~ERErL~~Qissl~~eNkiL~~k~ 365 (464)
+...+|.-++.++..|+..+..+..+|. ..++....+-.....|+.-|+.|+.|=..++..+.....-|..-+
T Consensus 239 ----~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~~~~~~l~GD~ 314 (344)
T PF12777_consen 239 ----EKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSEQIEELEEQLKNLVGDS 314 (344)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHHHHHHhcccHHHH
No 215
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=32.32 E-value=4.1e+02 Score=24.58 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=11.9
Q ss_pred HHHHHHHhHHHHHhhhhHHHHHhh
Q 012393 100 ELKSKLGDFIEQLKAKDMVLQKLE 123 (464)
Q Consensus 100 eLksKLk~s~EQLe~k~~~Lekl~ 123 (464)
-++..+.....||..++..=+-||
T Consensus 17 ~lk~~l~k~~~ql~~ke~lge~L~ 40 (177)
T PF13870_consen 17 TLKHQLAKLEEQLRQKEELGEGLH 40 (177)
T ss_pred HHHHHHHHHHHHHHHHHHhcCccc
Confidence 344455555555555554444444
No 216
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.23 E-value=8.6e+02 Score=28.26 Aligned_cols=106 Identities=19% Similarity=0.257 Sum_probs=67.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHH-------HHHHHHHhhhhhhhhHHHHHHhhhhhhHHHH
Q 012393 132 TMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIE-------SLKESLYGAESRAESAEEKVTQLTDTNLELS 204 (464)
Q Consensus 132 sL~eKV~sLEeQLkese~Ql~~akas~Ea~~~~isdmEnvIe-------dLK~kVskAESRAe~AEskc~lLteTN~ELn 204 (464)
.+--||-.||..||.+.--+.+.++..+.....-+++...+. .||+.+-.---|-..--+...-|-+-|+-|.
T Consensus 104 ~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQ 183 (772)
T KOG0999|consen 104 YYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQ 183 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 445688889999999888888888887766554444433322 2344444444455555677788899999999
Q ss_pred HHHhhhhcCCCCc----chhhhhhHHHHhhHHHHHHHh
Q 012393 205 EEINFLKGNNDSN----TKKVGILENQLRDLEIQLQQA 238 (464)
Q Consensus 205 eEL~~Lks~~s~~----~ek~~~LE~qLkese~QLqhA 238 (464)
.-++.||+.-- + -.-...||....-++.|++.|
T Consensus 184 KqVs~LR~sQV-EyEglkheikRleEe~elln~q~ee~ 220 (772)
T KOG0999|consen 184 KQVSNLRQSQV-EYEGLKHEIKRLEEETELLNSQLEEA 220 (772)
T ss_pred HHHHHHhhhhh-hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998721 1 111234444444455555544
No 217
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=31.42 E-value=2.8e+02 Score=29.72 Aligned_cols=92 Identities=20% Similarity=0.176 Sum_probs=70.4
Q ss_pred HHHHHhHHHHHHHHHHHHHhhcchHHHHhhhhHHHhhhhhHHhhhccccccchhHHHHHHHhHHHHHhhhhHHHHHhhhc
Q 012393 46 EQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLEST 125 (464)
Q Consensus 46 eqE~~~lEEaa~~~~eR~~EAENasEvL~G~Skel~gkLq~~Qf~L~as~~REseLksKLk~s~EQLe~k~~~Lekl~~s 125 (464)
.+..-|-|+++...-+|.-+|-|..--.+. ..=.||+.+...---.|-++|+.-+-++.++=..+......
T Consensus 178 ~dt~r~Ae~eV~~~eerv~kAs~~L~~yr~---------kngvfdp~~qaevq~~Lvs~Le~eL~~iqaqL~tvks~m~~ 248 (372)
T COG3524 178 RDTVRFAEEEVQKAEERVKKASNDLTDYRI---------KNGVFDPKAQAEVQMSLVSKLEDELIVIQAQLDTVKSVMNP 248 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHh---------hcCccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 455677788888888888888776544432 33457777766666778899999888888777777766654
Q ss_pred CchhhhhHHHHHHHHHHHHHH
Q 012393 126 KNSEVLTMKEKVKSLEEQLKE 146 (464)
Q Consensus 126 ~~SE~~sL~eKV~sLEeQLke 146 (464)
.+|+++.|.-.+.+|++|+.-
T Consensus 249 ~nPqi~~LkarieSlrkql~q 269 (372)
T COG3524 249 ENPQIPGLKARIESLRKQLLQ 269 (372)
T ss_pred CCCcchhHHHHHHHHHHHHHH
Confidence 689999999999999999864
No 218
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=30.95 E-value=6.7e+02 Score=26.61 Aligned_cols=22 Identities=9% Similarity=0.283 Sum_probs=10.9
Q ss_pred HHhhHHHHHHHHHhhhhhhhhh
Q 012393 255 AIWDMETLIEDLKSKVSKAESK 276 (464)
Q Consensus 255 tikDME~vIeDLksKv~kaE~r 276 (464)
.+.+++.-|..+++....++.+
T Consensus 237 ~~~~~~~~i~~l~~~i~~~~~~ 258 (457)
T TIGR01000 237 ILATIQQQIDQLQKSIASYQVQ 258 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555544444
No 219
>PLN02939 transferase, transferring glycosyl groups
Probab=30.86 E-value=1e+03 Score=28.85 Aligned_cols=90 Identities=21% Similarity=0.290 Sum_probs=56.9
Q ss_pred chhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHH-------------HHHHHHHhhhhhhhhhhhhhhhhh
Q 012393 218 TKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDME-------------TLIEDLKSKVSKAESKTESVEEQC 284 (464)
Q Consensus 218 ~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~mL~stikDME-------------~vIeDLksKv~kaE~rae~~E~kc 284 (464)
-+||+.|.--|-..-.|.++|....+-++. |.-++..+| ..|+-|+.|+--.|.|
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 366 (977)
T PLN02939 299 WEKVENLQDLLDRATNQVEKAALVLDQNQD----LRDKVDKLEASLKEANVSKFSSYKVELLQQKLKLLEER-------- 366 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchH----HHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHH--------
Confidence 356666666666666666666655544443 222222222 2456667777766655
Q ss_pred hhhhccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHh
Q 012393 285 IVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAA 321 (464)
Q Consensus 285 ~~LsEtN~eLneELsflrskl~~LE~sL~~A~~~K~~ 321 (464)
|-.++.+++-.+.-|..-++..+.+|+....+-..
T Consensus 367 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (977)
T PLN02939 367 --LQASDHEIHSYIQLYQESIKEFQDTLSKLKEESKK 401 (977)
T ss_pred --HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 66778888888888888888888888876555444
No 220
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=30.84 E-value=9.3e+02 Score=28.22 Aligned_cols=122 Identities=22% Similarity=0.217 Sum_probs=83.6
Q ss_pred HHHhHHHHHhhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHhhHHHHH
Q 012393 248 QQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVN 327 (464)
Q Consensus 248 qQ~mL~stikDME~vIeDLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrskl~~LE~sL~~A~~~K~~TakdI~ 327 (464)
.+..|.....=|+..|-.|++.+.+++-+.-..|+|--+|+..=..+..|+--+-..++..-..-. ..+. .+.++-
T Consensus 497 ~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~---e~~~-~~~~Lq 572 (698)
T KOG0978|consen 497 KHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQ---EAKQ-SLEDLQ 572 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHH---HHHH-HHHHHH
Confidence 355666677778888888999998888888888888888888877777777666555544322111 1111 112221
Q ss_pred HH----hH---HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhcCCCCC
Q 012393 328 HR----TK---LMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSGKSSS 373 (464)
Q Consensus 328 ~~----tK---~i~dLV~qLa~ERErL~~Qissl~~eNkiL~~k~k~~~~~~~ 373 (464)
+. .+ =|..-+..+..|.+-.+.+.+-+=.|+..|..|+...++..+
T Consensus 573 ~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~~ 625 (698)
T KOG0978|consen 573 IELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKKEES 625 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 11 22 234456677889999999999999999999999987655444
No 221
>PHA00327 minor capsid protein
Probab=30.63 E-value=79 Score=30.87 Aligned_cols=31 Identities=23% Similarity=0.396 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHH--HHHhh
Q 012393 337 VMQLATQRELIQKQVYSLTSENKLLV--EKLQY 367 (464)
Q Consensus 337 V~qLa~ERErL~~Qissl~~eNkiL~--~k~k~ 367 (464)
|.+|..||+|+|.++..|...|..++ .+..+
T Consensus 110 v~~l~~~~~r~~aelQnL~~q~r~in~~sav~e 142 (187)
T PHA00327 110 VQRLTYERKRMQAELQNLREQNRLINFNSAVRE 142 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHh
Confidence 56888999999999999999999985 45544
No 222
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=30.35 E-value=2e+02 Score=24.90 Aligned_cols=52 Identities=21% Similarity=0.211 Sum_probs=41.2
Q ss_pred HHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHHHhhhhcC
Q 012393 162 QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGN 213 (464)
Q Consensus 162 ~~~isdmEnvIedLK~kVskAESRAe~AEskc~lLteTN~ELneEL~~Lks~ 213 (464)
...|.=+.=-|++||++-......++.+-+--.-|...|.+|+.|-+.-.++
T Consensus 17 vdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~Wqer 68 (79)
T PRK15422 17 IDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQER 68 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666999999988888888888888888999999999987776654
No 223
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=30.09 E-value=7.4e+02 Score=26.84 Aligned_cols=84 Identities=26% Similarity=0.280 Sum_probs=55.6
Q ss_pred hhhhhhhhhhhhHHHHHHHhhHHHHHHHHhhHHHHHHHhHHHHH-----------------HHHHHHHH-------HHHH
Q 012393 292 FELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMME-----------------MVMQLATQ-------RELI 347 (464)
Q Consensus 292 ~eLneELsflrskl~~LE~sL~~A~~~K~~TakdI~~~tK~i~d-----------------LV~qLa~E-------RErL 347 (464)
.-|.++++.|-.|.+++++.|...|+.=..--.++..-||-|+. .|-+||.| -+++
T Consensus 218 ~qlK~ql~lY~aKyeefq~tl~KSNE~F~~fK~E~ekmtKk~kklEKE~l~wr~K~e~aNk~vL~la~ekt~~~k~~~~l 297 (391)
T KOG1850|consen 218 GQLKEQLALYMAKYEEFQTTLAKSNELFTKFKQEMEKMTKKIKKLEKETLIWRTKWENANKAVLQLAEEKTVRDKEYETL 297 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHH
Confidence 45778888888999999999888887655544455544544443 46667665 3566
Q ss_pred HHHHHHh-------hhhhhHHHHHHhhcCCCCCce
Q 012393 348 QKQVYSL-------TSENKLLVEKLQYSGKSSSAT 375 (464)
Q Consensus 348 ~~Qissl-------~~eNkiL~~k~k~~~~~~~~~ 375 (464)
+.+|-.| -.+.+-|+.++.....++|+.
T Consensus 298 q~kiq~LekLcRALq~ernel~~~~~~~e~~v~~k 332 (391)
T KOG1850|consen 298 QKKIQRLEKLCRALQTERNELNKKLEDLEAQVSAK 332 (391)
T ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHhcccchh
Confidence 6666544 456666777777666666663
No 224
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=29.92 E-value=4.5e+02 Score=26.18 Aligned_cols=36 Identities=31% Similarity=0.221 Sum_probs=21.3
Q ss_pred HHHHHhHHHHHHHHHHHHHhhcchHHHHhhhhHHHhhh
Q 012393 46 EQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGR 83 (464)
Q Consensus 46 eqE~~~lEEaa~~~~eR~~EAENasEvL~G~Skel~gk 83 (464)
..|...+++.-. .|+|++.+.+-++|..++..-.+.
T Consensus 27 ~~El~~~~~L~~--~GkiLeg~~Ld~aL~~~~~~~~~~ 62 (256)
T PF14932_consen 27 EEELQAFEELQK--SGKILEGEALDEALKTISAFSPKL 62 (256)
T ss_pred HHHHHHHHHHHH--cCCcCCHHHHHHHHHHcccccCCc
Confidence 344444444443 666777777777777766654444
No 225
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=29.92 E-value=1.1e+02 Score=33.79 Aligned_cols=46 Identities=15% Similarity=0.178 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHH
Q 012393 134 KEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESL 179 (464)
Q Consensus 134 ~eKV~sLEeQLkese~Ql~~akas~Ea~~~~isdmEnvIedLK~kV 179 (464)
+.|+..||+||......++-..+.....+.+|.+++..|..|+.++
T Consensus 75 Q~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 75 QVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 4466677777776654444333443445566666666666666666
No 226
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=29.49 E-value=1.2e+02 Score=27.41 Aligned_cols=52 Identities=21% Similarity=0.325 Sum_probs=42.5
Q ss_pred hHHHHHhhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhhhhhhhhhhHHHHHH
Q 012393 251 MLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILE 309 (464)
Q Consensus 251 mL~stikDME~vIeDLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrskl~~LE 309 (464)
-+|..+..||.-|..+-..+...... ..-|-|.|..|.-|-.-||.|+..++
T Consensus 5 elfd~l~~le~~l~~l~~el~~LK~~-------~~el~EEN~~L~iEN~~Lr~~l~~~~ 56 (110)
T PRK13169 5 EIFDALDDLEQNLGVLLKELGALKKQ-------LAELLEENTALRLENDKLRERLEELE 56 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 37888888888888888877766655 77888999999999999999988663
No 227
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=29.43 E-value=4.4e+02 Score=24.02 Aligned_cols=66 Identities=20% Similarity=0.239 Sum_probs=39.1
Q ss_pred HHHHHhhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhhhhhhhhhhHHHHHHHhhHHHH--HHHHhhHH
Q 012393 252 LYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRAN--IEKAASAK 324 (464)
Q Consensus 252 L~stikDME~vIeDLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrskl~~LE~sL~~A~--~~K~~Tak 324 (464)
+-..+.-|+.-||+.|.--.-.=+. -=.|...|--|..+-...-.|+.+|+.++..|. .+.+-.||
T Consensus 14 l~n~La~Le~slE~~K~S~~eL~kq-------kd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak 81 (107)
T PF09304_consen 14 LQNRLASLERSLEDEKTSQGELAKQ-------KDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAK 81 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666555433222111 112777788888888888888888888887664 23344444
No 228
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=29.41 E-value=2.6e+02 Score=24.25 Aligned_cols=58 Identities=22% Similarity=0.285 Sum_probs=46.4
Q ss_pred HhhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhhhhhhhhhhHHHHHHHhhH
Q 012393 256 IWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLN 313 (464)
Q Consensus 256 ikDME~vIeDLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrskl~~LE~sL~ 313 (464)
|.=+--=|++||.|-.....+++.+-..--.|...|-.|.+|......|+..|=+++.
T Consensus 20 I~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm~ 77 (79)
T PRK15422 20 ITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRME 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3333344899999988888888887777788999999999999999999888765543
No 229
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=28.93 E-value=3.7e+02 Score=23.05 Aligned_cols=45 Identities=20% Similarity=0.326 Sum_probs=32.9
Q ss_pred hhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHHHhhh
Q 012393 166 NEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFL 210 (464)
Q Consensus 166 sdmEnvIedLK~kVskAESRAe~AEskc~lLteTN~ELneEL~~L 210 (464)
++++.-|..|...-++=.-+-++++++|.-|.++|-+++..|+..
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a 79 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSA 79 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555566666666666677788888999999999999887643
No 230
>PF00846 Hanta_nucleocap: Hantavirus nucleocapsid protein; InterPro: IPR002214 Hantaviruses are ssRNA negative-strand viruses. The nucleocapsid protein is an internal protein of the virus particle [, ].; GO: 0019013 viral nucleocapsid; PDB: 2IC9_A 2IC6_A 2K48_A 4FI5_A.
Probab=28.36 E-value=1.1e+02 Score=33.24 Aligned_cols=68 Identities=21% Similarity=0.242 Sum_probs=47.4
Q ss_pred hhhhHHHhhhhhHHhhhccccccchhHHHHHHHhHHHHHhhhhHHHH--HhhhcCchhhhhHHHHHHHHHHHHHHHHH
Q 012393 74 MGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQ--KLESTKNSEVLTMKEKVKSLEEQLKESEI 149 (464)
Q Consensus 74 ~G~Skel~gkLq~~Qf~L~as~~REseLksKLk~s~EQLe~k~~~Le--kl~~s~~SE~~sL~eKV~sLEeQLkese~ 149 (464)
||..++++.-+...+..|.-+ +-||++++++-+.--..+. .++. +.++|..+++|+..|.+||.+.-.
T Consensus 1 m~~~~elq~e~~~~E~qL~~a-------~qkl~da~~~~e~dpD~~nk~~~~~-R~~~v~~~~~Ki~elkr~lAd~v~ 70 (428)
T PF00846_consen 1 MSTLEELQEEITQHEQQLVIA-------RQKLKDAEKQYEKDPDDVNKSTLQQ-RQSVVSALQDKIAELKRQLADRVA 70 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH---HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhcCCChHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456677777777666666544 5689999998886433333 3333 478999999999999999998543
No 231
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=27.21 E-value=5.9e+02 Score=24.75 Aligned_cols=138 Identities=25% Similarity=0.353 Sum_probs=81.8
Q ss_pred HHHHHHhhhhhhHHHhHHHHhhhHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHhhc-chHHHHhhhhHHHhhhhhHHhhh
Q 012393 12 RMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAE-NSAEVLMGISKEMLGRFQIVQFN 90 (464)
Q Consensus 12 rmLEkSlA~e~dLEkkL~es~~~eeeLk~kL~~~eqE~~~lEEaa~~~~eR~~EAE-NasEvL~G~Skel~gkLq~~Qf~ 90 (464)
|||=..+-+=-+|...+.+.+..-.+|..-.-...+.-+.-+-|. .+|=-.+ ++.+++.+-..++ -.....
T Consensus 5 rvlSar~~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL----~k~e~~e~~Lpqll~~h~eEv----r~Lr~~ 76 (194)
T PF15619_consen 5 RVLSARLHKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKAL----QKYEDTEAELPQLLQRHNEEV----RVLRER 76 (194)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhhhHHHHHHHHHHHH----HHHHHH
Confidence 344444444455555665555555555444444444333333333 2222222 2344554444443 345666
Q ss_pred ccccccchhHHHHHHHhHHHHHhhhhHHHHHhhhc----CchhhhhHHHHHHHHHHHHHHHHHHHhhhhhc
Q 012393 91 LNGSLQRESELKSKLGDFIEQLKAKDMVLQKLEST----KNSEVLTMKEKVKSLEEQLKESEIRLQNANAC 157 (464)
Q Consensus 91 L~as~~REseLksKLk~s~EQLe~k~~~Lekl~~s----~~SE~~sL~eKV~sLEeQLkese~Ql~~akas 157 (464)
|+-+--++.++.-+++....+|-.-...+.+|+.- .=+|...|..+|..++..+.+.+-.+....-.
T Consensus 77 LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~ 147 (194)
T PF15619_consen 77 LRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQ 147 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777788888888888888887777666666553 23778888889888888888887776554433
No 232
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=27.13 E-value=6.4e+02 Score=25.14 Aligned_cols=164 Identities=23% Similarity=0.220 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHHHhhhhcCC
Q 012393 135 EKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNN 214 (464)
Q Consensus 135 eKV~sLEeQLkese~Ql~~akas~Ea~~~~isdmEnvIedLK~kVskAESRAe~AEskc~lLteTN~ELneEL~~Lks~~ 214 (464)
|.-..|+.-+++-+.++..++-.+........-++.=.+++...+-+=|++|..|..+- |-.|-.+.
T Consensus 24 Dp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g------~E~LAr~a------- 90 (225)
T COG1842 24 DPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAG------NEDLAREA------- 90 (225)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------CHHHHHHH-------
Confidence 33456677777777777777766665656666666667777777777777777765432 22222221
Q ss_pred CCcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhh
Q 012393 215 DSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFEL 294 (464)
Q Consensus 215 s~~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~mL~stikDME~vIeDLksKv~kaE~rae~~E~kc~~LsEtN~eL 294 (464)
-.+.-.||.++...+.+++.+...++.-..+-.-|..+|.++..-.+-++....-++.. +.+..-..+.+. ..=
T Consensus 91 ---l~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~-~~v~~~~~~~s~--~sa 164 (225)
T COG1842 91 ---LEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQ-EKVNRSLGGGSS--SSA 164 (225)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCc--hhh
Confidence 23566788888888888887777766655433334444444444444443333322222 222222333332 122
Q ss_pred hhhhhhhhhHHHHHHHhhHHHHH
Q 012393 295 KNKQSFMRDKIKILESSLNRANI 317 (464)
Q Consensus 295 neELsflrskl~~LE~sL~~A~~ 317 (464)
...+.-++.|++..|.....+.+
T Consensus 165 ~~~fer~e~kiee~ea~a~~~~e 187 (225)
T COG1842 165 MAAFERMEEKIEEREARAEAAAE 187 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHH
Confidence 23455566777777766655554
No 233
>PRK04406 hypothetical protein; Provisional
Probab=26.89 E-value=1.7e+02 Score=24.52 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=16.4
Q ss_pred HHHhhHHHHHHHHHhhhhhhhhh
Q 012393 254 SAIWDMETLIEDLKSKVSKAESK 276 (464)
Q Consensus 254 stikDME~vIeDLksKv~kaE~r 276 (464)
.|+.+|+.=|.||..|+++.|.-
T Consensus 4 ~~~~~le~Ri~~LE~~lAfQE~t 26 (75)
T PRK04406 4 KTIEQLEERINDLECQLAFQEQT 26 (75)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777778888887777744
No 234
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=26.74 E-value=2.6e+02 Score=22.73 Aligned_cols=44 Identities=20% Similarity=0.260 Sum_probs=34.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhh
Q 012393 324 KEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQY 367 (464)
Q Consensus 324 kdI~~~tK~i~dLV~qLa~ERErL~~Qissl~~eNkiL~~k~k~ 367 (464)
.++.++--...|++.+|....-+-+.+|..|...-+.|..+++.
T Consensus 7 ~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 7 EELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566778888899999999999999999999999999986
No 235
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=26.72 E-value=8.5e+02 Score=26.43 Aligned_cols=70 Identities=23% Similarity=0.257 Sum_probs=45.8
Q ss_pred HhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhhhhhhhhhhHHHHHHHhhHHHH
Q 012393 237 QAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRAN 316 (464)
Q Consensus 237 hA~As~eAs~eqQ~mL~stikDME~vIeDLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrskl~~LE~sL~~A~ 316 (464)
+++.--+-+++-+.-+.+|++|++.....--++ .+-|.+.|.+|.+++.-+..+....+.-++.-+
T Consensus 99 q~k~eEerRkea~~~fqvtL~diqktla~~~~~--------------n~klre~NieL~eKlkeL~eQy~~re~hidk~~ 164 (391)
T KOG1850|consen 99 QMKKEEERRKEAVEQFQVTLKDIQKTLAEGRSK--------------NDKLREDNIELSEKLKELGEQYEEREKHIDKQI 164 (391)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchh--------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333445555666788899988765543333 456778889998888888877777666666555
Q ss_pred HHHH
Q 012393 317 IEKA 320 (464)
Q Consensus 317 ~~K~ 320 (464)
.-|.
T Consensus 165 e~ke 168 (391)
T KOG1850|consen 165 QKKE 168 (391)
T ss_pred HHHH
Confidence 5444
No 236
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=26.49 E-value=1.3e+02 Score=24.33 Aligned_cols=19 Identities=32% Similarity=0.380 Sum_probs=12.1
Q ss_pred hHHHHHHHHHhhhhhhhhh
Q 012393 258 DMETLIEDLKSKVSKAESK 276 (464)
Q Consensus 258 DME~vIeDLksKv~kaE~r 276 (464)
+|+.=|++|.+|+++.|.-
T Consensus 1 ~le~Ri~~LE~~la~qe~~ 19 (69)
T PF04102_consen 1 MLEERIEELEIKLAFQEDT 19 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 3566666777777766644
No 237
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=26.37 E-value=7.5e+02 Score=28.27 Aligned_cols=81 Identities=19% Similarity=0.212 Sum_probs=42.9
Q ss_pred HHHhhhhhhHHHHHHHhhhhcCCCC----cchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHH
Q 012393 192 KVTQLTDTNLELSEEINFLKGNNDS----NTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLK 267 (464)
Q Consensus 192 kc~lLteTN~ELneEL~~Lks~~s~----~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~mL~stikDME~vIeDLk 267 (464)
|.+-+.+-|.+|..+...||--... ++--++.++++|++.+.|.---.--..--..+-+-.|.-+..+.+.|-|++
T Consensus 167 kLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~q 246 (596)
T KOG4360|consen 167 KLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQ 246 (596)
T ss_pred hcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3344556677777766666654211 133466788888887665432211001111222333555677777777777
Q ss_pred hhhhh
Q 012393 268 SKVSK 272 (464)
Q Consensus 268 sKv~k 272 (464)
.|..-
T Consensus 247 kk~k~ 251 (596)
T KOG4360|consen 247 KKIKY 251 (596)
T ss_pred HHHHH
Confidence 66543
No 238
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=26.29 E-value=8.8e+02 Score=27.89 Aligned_cols=181 Identities=14% Similarity=0.183 Sum_probs=0.0
Q ss_pred HHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhhhhhhhhhhHHHHHHHhhHH
Q 012393 235 LQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNR 314 (464)
Q Consensus 235 LqhA~As~eAs~eqQ~mL~stikDME~vIeDLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrskl~~LE~sL~~ 314 (464)
+|.+.|.+....-+...+..-.+++..-...+...+... -.++.+-....+-..+..+...+..|++...+|. .
T Consensus 306 lqe~~a~v~q~~~e~~~l~~eaq~l~~~L~~~~~e~~~~--~~~~s~~~al~~ele~~~l~A~l~~L~se~q~L~----~ 379 (632)
T PF14817_consen 306 LQEQWAHVQQFLAEEDALNKEAQALSQRLQRLLEEIERR--LSGSSEREALALELEVAGLKASLNALRSECQRLK----E 379 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--ccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH----H
Q ss_pred HHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhcCCCCCceecccCCCCCccccccCCCC
Q 012393 315 ANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSGKSSSATMYNAGDTDDKELLINPTNN 394 (464)
Q Consensus 315 A~~~K~~TakdI~~~tK~i~dLV~qLa~ERErL~~Qissl~~eNkiL~~k~k~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 394 (464)
+-..+-.-..++..+-+=|.|.-+. |...+.||..|.+.|......+.. .+.-+-.|..+. |+|...
T Consensus 380 ~~~~r~e~~~~Lq~K~q~I~~frql----v~e~QeqIr~LiK~Nsaakt~L~q--~~~E~~~~~~~k-------l~P~~~ 446 (632)
T PF14817_consen 380 AAAERQEALRSLQAKWQRILDFRQL----VSEKQEQIRALIKGNSAAKTQLEQ--SPAEAQEFVQRK-------LVPQFE 446 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhHHHHHHHHh--ChHHHHHHHhcc-------cCCcHH
Q ss_pred CCCccccchhhhhh------------HHhhhhhcc-------cccceeeecCCCCchHH
Q 012393 395 LAGATVKTSEDAVS------------LMKSVQAGT-------HLNICRIYTRGLAYPEF 434 (464)
Q Consensus 395 ~~~~~~~t~~~~~~------------~~~~~~~~~-------~~~~~~~~~~~~~~~~~ 434 (464)
.-.....+..|.|+ .+..-+.|. ++.||||.|---.+|-|
T Consensus 447 ~V~~~s~~l~~~ie~E~~~f~~~~l~~Ll~~~~~~~~~~P~~~lSI~rl~~~~~~~~~l 505 (632)
T PF14817_consen 447 AVAPQSQELRDCIEREVRAFQAIPLNALLRRRAGGLQRDPSADLSIHRLHAASPYGASL 505 (632)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccHHHHHhhccCCCCCCCchhhHHHHhcccCCCCchH
No 239
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=26.27 E-value=7.6e+02 Score=25.76 Aligned_cols=162 Identities=20% Similarity=0.233 Sum_probs=79.8
Q ss_pred hHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhHH
Q 012393 168 MDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQE 247 (464)
Q Consensus 168 mEnvIedLK~kVskAESRAe~AEskc~lLteTN~ELneEL~~Lks~~s~~~ek~~~LE~qLkese~QLqhA~As~eAs~e 247 (464)
=++.+.+||..+..-|.+--.|=.-+.+|---..-|-=+++.|++. +.-+|..+-++.-....-.-..+.-
T Consensus 75 se~s~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~-------lee~eE~~~~~~re~~eK~~elEr~-- 145 (302)
T PF09738_consen 75 SEASLRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDK-------LEELEETLAQLQREYREKIRELERQ-- 145 (302)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 3446778888888888877777666666655555555567777763 6666666655433332111111111
Q ss_pred HHHhHHHHHhhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhh--ccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHhhHHH
Q 012393 248 QQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLS--EDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKE 325 (464)
Q Consensus 248 qQ~mL~stikDME~vIeDLksKv~kaE~rae~~E~kc~~Ls--EtN~eLneELsflrskl~~LE~sL~~A~~~K~~Takd 325 (464)
...+.-+..=+.+|+..+.. |-+-.++.-++|. .+|-+.+.++..-- .-...--+-..|+..+.+ -+
T Consensus 146 -----K~~~d~L~~e~~~Lre~L~~---rdeli~khGlVlv~~~~ngd~~~~~~~~~-~~~~~~vs~e~a~~L~~a--G~ 214 (302)
T PF09738_consen 146 -----KRAHDSLREELDELREQLKQ---RDELIEKHGLVLVPDATNGDTSDEPNNVG-HPKRALVSQEAAQLLESA--GD 214 (302)
T ss_pred -----HHHHHHHHHHHHHHHHHHHH---HHHHHHHCCeeeCCCCCCCccccCccccC-CCcccccchhhhhhhccc--CC
Confidence 11222222333334433321 1122333445554 57777766554211 101111112222222221 11
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 012393 326 VNHRTKLMMEMVMQLATQRELIQKQVYSL 354 (464)
Q Consensus 326 I~~~tK~i~dLV~qLa~ERErL~~Qissl 354 (464)
. .+-.=+.+|+.||+.|..||-.|
T Consensus 215 g-----~LDvRLkKl~~eke~L~~qv~kl 238 (302)
T PF09738_consen 215 G-----SLDVRLKKLADEKEELLEQVRKL 238 (302)
T ss_pred C-----CHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11223667889999999999766
No 240
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=26.27 E-value=6.8e+02 Score=25.14 Aligned_cols=78 Identities=26% Similarity=0.409 Sum_probs=54.7
Q ss_pred hhhHHHHHhhhcCchhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhh-------HHHHh--------------------
Q 012393 114 AKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS-------QEQLN-------------------- 166 (464)
Q Consensus 114 ~k~~~Lekl~~s~~SE~~sL~eKV~sLEeQLkese~Ql~~akas~Ea~-------~~~is-------------------- 166 (464)
.-...|..+.+- |++..|...|..+|..|++....+..|+..-+.. |-+++
T Consensus 20 ~as~~lNd~TGY--s~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqRK~sWs~~DleRFT~L 97 (207)
T PF05546_consen 20 TASQALNDVTGY--SEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQRKHSWSPADLERFTEL 97 (207)
T ss_pred HHHHHHHhccCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHH
Confidence 344556666664 8889999999999999999999888887665432 22333
Q ss_pred -----hhHHHHHHHHHHHHhhhhhhhhHHHHH
Q 012393 167 -----EMDNFIESLKESLYGAESRAESAEEKV 193 (464)
Q Consensus 167 -----dmEnvIedLK~kVskAESRAe~AEskc 193 (464)
.++.-..+.|.++..||...+.+....
T Consensus 98 yr~dH~~e~~e~~ak~~l~~aE~~~e~~~~~L 129 (207)
T PF05546_consen 98 YRNDHENEQAEEEAKEALEEAEEKVEEAFDDL 129 (207)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777777777777666544
No 241
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=26.17 E-value=5.2e+02 Score=24.15 Aligned_cols=77 Identities=17% Similarity=0.223 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhchhhhHH---HHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHHHhh
Q 012393 133 MKEKVKSLEEQLKESEIRLQNANACFQTSQE---QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINF 209 (464)
Q Consensus 133 L~eKV~sLEeQLkese~Ql~~akas~Ea~~~---~isdmEnvIedLK~kVskAESRAe~AEskc~lLteTN~ELneEL~~ 209 (464)
...++..++.++..+..|+..+....+.... -..++..-|++|+.++..+....+.-...... |..++..|..
T Consensus 18 ~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~~----~~ai~~al~~ 93 (155)
T PF06810_consen 18 PKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQMKK----DSAIKSALKG 93 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 3334444444444444444444433332222 23344444555555554443333332222222 4555555555
Q ss_pred hhcC
Q 012393 210 LKGN 213 (464)
Q Consensus 210 Lks~ 213 (464)
.+.+
T Consensus 94 akak 97 (155)
T PF06810_consen 94 AKAK 97 (155)
T ss_pred cCCC
Confidence 5444
No 242
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=26.10 E-value=3.5e+02 Score=24.92 Aligned_cols=71 Identities=20% Similarity=0.286 Sum_probs=35.4
Q ss_pred HHhhhhhHHhhhccccccchhHHHHHHHhHHHHHhhhhHHHHHhhhc--------------Cchhh-hhHHHHHHHHHHH
Q 012393 79 EMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLEST--------------KNSEV-LTMKEKVKSLEEQ 143 (464)
Q Consensus 79 el~gkLq~~Qf~L~as~~REseLksKLk~s~EQLe~k~~~Lekl~~s--------------~~SE~-~sL~eKV~sLEeQ 143 (464)
..+.++|..|..|.....+=. +++..+...+.--.+|+++..+ +.+++ ..|.+++..||.+
T Consensus 10 ~~l~q~QqLq~ql~~~~~qk~----~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E~Le~r 85 (119)
T COG1382 10 AQLAQLQQLQQQLQKVILQKQ----QLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERKETLELR 85 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 456677777777776665532 3322222222222344555554 12222 3456666666666
Q ss_pred HHHHHHHHhh
Q 012393 144 LKESEIRLQN 153 (464)
Q Consensus 144 Lkese~Ql~~ 153 (464)
++..+.|-..
T Consensus 86 i~tLekQe~~ 95 (119)
T COG1382 86 IKTLEKQEEK 95 (119)
T ss_pred HHHHHHHHHH
Confidence 6655554433
No 243
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=25.99 E-value=9.6e+02 Score=26.82 Aligned_cols=46 Identities=22% Similarity=0.289 Sum_probs=21.9
Q ss_pred HHHHHHHhHHHHHhhhhHHHHHhhhcCchhhhhHHHHHHHHHHHHHH
Q 012393 100 ELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKE 146 (464)
Q Consensus 100 eLksKLk~s~EQLe~k~~~Lekl~~s~~SE~~sL~eKV~sLEeQLke 146 (464)
++..+++....++......+..+-+..-|=++ +..-+..+.+|+..
T Consensus 266 ~Le~ei~~le~e~~e~~~~l~~l~~~~~p~~l-~~~ll~~~~~q~~~ 311 (650)
T TIGR03185 266 QLERQLKEIEAARKANRAQLRELAADPLPLLL-IPNLLDSTKAQLQK 311 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCHhh-hHHHHHHHHHHHHH
Confidence 44455555555555555555555554222211 23445555555544
No 244
>PRK00846 hypothetical protein; Provisional
Probab=25.88 E-value=1.1e+02 Score=26.09 Aligned_cols=53 Identities=11% Similarity=0.112 Sum_probs=23.8
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhhhhhhhhhhHHHHHHHh
Q 012393 259 METLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESS 311 (464)
Q Consensus 259 ME~vIeDLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrskl~~LE~s 311 (464)
|+.=|++|..|+++.|.-.+.+-.-.+-.-..-..|...|..+..|+.+.+.+
T Consensus 11 le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~~s 63 (77)
T PRK00846 11 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRST 63 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 44555555555555553322222222222223334455555555566555544
No 245
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=25.83 E-value=3.9e+02 Score=26.52 Aligned_cols=81 Identities=21% Similarity=0.310 Sum_probs=45.7
Q ss_pred hcchHHHHhhhhHHHhhhhhHHhhhccccccchhHHHHHHHhHHHHHhhhhHHHHHhhhc--------------Cchhhh
Q 012393 66 AENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLEST--------------KNSEVL 131 (464)
Q Consensus 66 AENasEvL~G~Skel~gkLq~~Qf~L~as~~REseLksKLk~s~EQLe~k~~~Lekl~~s--------------~~SE~~ 131 (464)
|+|+.++++.-..+- +|==+. .|.-|..+||.==+.=....+++|...+..-.|.-+. ++.|.+
T Consensus 5 ~~~~e~ivl~~~~eq-NrP~ss-q~v~~~lq~e~lgktavqk~Ld~La~~Gki~~K~YGKqKIY~a~QDqF~~~~~eel~ 82 (201)
T KOG4603|consen 5 AEDAEGIVLRYLQEQ-NRPYSS-QDVFGNLQREHLGKTAVQKTLDQLAQQGKIKEKMYGKQKIYFADQDQFDMVSDEELQ 82 (201)
T ss_pred ccccHHHHHHHHHHh-cCCCch-HHHHHHHHHHhccchHHHHHHHHHHHcCchhHHhccceeeEeecHHhhcCCChHHHH
Confidence 456666666543331 111111 1223344444412333456788888888777776665 357777
Q ss_pred hHHHHHHHHHHHHHHHH
Q 012393 132 TMKEKVKSLEEQLKESE 148 (464)
Q Consensus 132 sL~eKV~sLEeQLkese 148 (464)
-|-.|+.-|++++++..
T Consensus 83 ~ld~~i~~l~ek~q~l~ 99 (201)
T KOG4603|consen 83 VLDGKIVALTEKVQSLQ 99 (201)
T ss_pred HHhHHHHHHHHHHHHHH
Confidence 77777777777776543
No 246
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=25.81 E-value=6.2e+02 Score=24.57 Aligned_cols=49 Identities=18% Similarity=0.302 Sum_probs=25.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhh-------hHHHHhhhHHHHHHHH
Q 012393 128 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQT-------SQEQLNEMDNFIESLK 176 (464)
Q Consensus 128 SE~~sL~eKV~sLEeQLkese~Ql~~akas~Ea-------~~~~isdmEnvIedLK 176 (464)
.|...|.-++.-|+-.+........-+....+- ....+..+.+.|....
T Consensus 157 ae~~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln~~R 212 (240)
T PF12795_consen 157 AELAALEAQIEMLEQELLSNNNRQELLQLQRDLLKARIQRLQQQLQALQNLLNQKR 212 (240)
T ss_pred HHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666555443333333333 3334555555555443
No 247
>PRK10869 recombination and repair protein; Provisional
Probab=25.77 E-value=9.4e+02 Score=26.66 Aligned_cols=30 Identities=3% Similarity=0.029 Sum_probs=13.4
Q ss_pred hHHHhHHHHhhhHHHHHhhhhhhHHHHHhH
Q 012393 23 DLEKKISELNQNEEQLKLKLHHTEQVAFRM 52 (464)
Q Consensus 23 dLEkkL~es~~~eeeLk~kL~~~eqE~~~l 52 (464)
++.++|.+.+..+.+...++...+-+...+
T Consensus 168 ~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei 197 (553)
T PRK10869 168 QSCRDLAQHQQQSQERAARKQLLQYQLKEL 197 (553)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 344455554444444444444444333333
No 248
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=25.69 E-value=2.6e+02 Score=25.70 Aligned_cols=31 Identities=19% Similarity=0.395 Sum_probs=20.0
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHhhhhhc
Q 012393 127 NSEVLTMKEKVKSLEEQLKESEIRLQNANAC 157 (464)
Q Consensus 127 ~SE~~sL~eKV~sLEeQLkese~Ql~~akas 157 (464)
+.+...|++.+..|....+....++....+.
T Consensus 78 d~ei~~L~~el~~l~~~~k~l~~eL~~L~~~ 108 (169)
T PF07106_consen 78 DAEIKELREELAELKKEVKSLEAELASLSSE 108 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4556667777777777777776666655544
No 249
>smart00340 HALZ homeobox associated leucin zipper.
Probab=25.40 E-value=54 Score=25.55 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=19.7
Q ss_pred HHHhhhhhhHHHHHHHhhhhcC
Q 012393 192 KVTQLTDTNLELSEEINFLKGN 213 (464)
Q Consensus 192 kc~lLteTN~ELneEL~~Lks~ 213 (464)
=|.-||+.|-.|..|+..||+.
T Consensus 13 cce~LteeNrRL~ke~~eLral 34 (44)
T smart00340 13 CCESLTEENRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3778999999999999999986
No 250
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=25.28 E-value=3.9e+02 Score=24.97 Aligned_cols=63 Identities=22% Similarity=0.298 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhchhh-hHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhh
Q 012393 135 EKVKSLEEQLKESEIRLQNANACFQT-SQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLT 197 (464)
Q Consensus 135 eKV~sLEeQLkese~Ql~~akas~Ea-~~~~isdmEnvIedLK~kVskAESRAe~AEskc~lLt 197 (464)
..+-.+++.++....|..++....+. ..++......-|++||.++.+++.-.+.--.++..|+
T Consensus 125 ~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 125 KELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQ 188 (192)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433322222 2234556667788888888877666665555554443
No 251
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=24.97 E-value=5.5e+02 Score=29.71 Aligned_cols=69 Identities=22% Similarity=0.336 Sum_probs=47.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhh---HHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhh
Q 012393 128 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTS---QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQL 196 (464)
Q Consensus 128 SE~~sL~eKV~sLEeQLkese~Ql~~akas~Ea~---~~~isdmEnvIedLK~kVskAESRAe~AEskc~lL 196 (464)
.|...|..++..+.+.+-.++.++..++.+.... .-++..+++-|+.|..++.+..++.+.-+.+...|
T Consensus 436 ~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l 507 (652)
T COG2433 436 EENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAEL 507 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777777766665422 12677888888888888888888777655554443
No 252
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=24.82 E-value=1e+03 Score=26.72 Aligned_cols=127 Identities=15% Similarity=0.214 Sum_probs=68.8
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhH
Q 012393 167 EMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQ 246 (464)
Q Consensus 167 dmEnvIedLK~kVskAESRAe~AEskc~lLteTN~ELneEL~~Lks~~s~~~ek~~~LE~qLkese~QLqhA~As~eAs~ 246 (464)
|.+.=+.-|+.+|..-+.-...|...-.-|---|.+|- .++.-||.++|+.|....++.+--+-++
T Consensus 219 di~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLv--------------hR~h~LEEq~reqElraeE~l~Ee~rrh 284 (502)
T KOG0982|consen 219 DIERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLV--------------HRYHMLEEQRREQELRAEESLSEEERRH 284 (502)
T ss_pred hHHHHHHHHHHHHHHhhcchhccccchhHHHHHHHHHH--------------HHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 44444444555555544444444444444444455543 3688999999998888887776544444
Q ss_pred HHHHhHHHHH-hhHHHHHHHHHhhhhhhhhh-------hhhhhhhhhhhhccchhhhhhhhhhhhHHHHHHH
Q 012393 247 EQQSMLYSAI-WDMETLIEDLKSKVSKAESK-------TESVEEQCIVLSEDNFELKNKQSFMRDKIKILES 310 (464)
Q Consensus 247 eqQ~mL~sti-kDME~vIeDLksKv~kaE~r-------ae~~E~kc~~LsEtN~eLneELsflrskl~~LE~ 310 (464)
. .+|.++ +--...+|-++.++.-.+.+ +-++-..|--|.+.--.+.+.|..+|-++.|.+.
T Consensus 285 r---Eil~k~eReasle~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~ 353 (502)
T KOG0982|consen 285 R---EILIKKEREASLEKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQK 353 (502)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 3 233322 22224556666665544433 2233344445555555566666666666666543
No 253
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=24.75 E-value=3.1e+02 Score=29.13 Aligned_cols=52 Identities=19% Similarity=0.347 Sum_probs=43.2
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHH
Q 012393 127 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKES 178 (464)
Q Consensus 127 ~SE~~sL~eKV~sLEeQLkese~Ql~~akas~Ea~~~~isdmEnvIedLK~k 178 (464)
+..|.-|+.|+..|+++|.+.+.+|+.++....-.+++-.=+++++.|-+-.
T Consensus 174 ~D~v~LLqkk~~~l~~~l~~~~~eL~~~~k~L~faqekn~LlqslLddaniD 225 (323)
T PF08537_consen 174 SDRVILLQKKIDELEERLNDLEKELEITKKDLKFAQEKNALLQSLLDDANID 225 (323)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 4567789999999999999999999999888887788777777777765543
No 254
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=24.68 E-value=5.8e+02 Score=23.86 Aligned_cols=100 Identities=17% Similarity=0.204 Sum_probs=62.4
Q ss_pred HHhhHHHHHHHHHhhhhhhhhhhhhhhh-hhhhhhccchhhhhhhhhhhhHHHHHHHhhHH-----HHHHHHhhHHHHHH
Q 012393 255 AIWDMETLIEDLKSKVSKAESKTESVEE-QCIVLSEDNFELKNKQSFMRDKIKILESSLNR-----ANIEKAASAKEVNH 328 (464)
Q Consensus 255 tikDME~vIeDLksKv~kaE~rae~~E~-kc~~LsEtN~eLneELsflrskl~~LE~sL~~-----A~~~K~~TakdI~~ 328 (464)
+=.|+|+..-.+++.++...+.....+. ...-|-..+-.|..|+.-++.++..==..+.. .|.+|...-.+...
T Consensus 45 tk~d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L~~ei~~l~a~~klD~n~eK~~~r~e~~~ 124 (177)
T PF07798_consen 45 TKSDLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQELREEINKLRAEVKLDLNLEKGRIREEQAK 124 (177)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4577777777777777777766554432 23345555666666666666665442122221 34456555556666
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHh
Q 012393 329 RTKLMMEMVMQLATQRELIQKQVYSL 354 (464)
Q Consensus 329 ~tK~i~dLV~qLa~ERErL~~Qissl 354 (464)
...-|.++-.++..|...|..+|-++
T Consensus 125 ~~~ki~e~~~ki~~ei~~lr~~iE~~ 150 (177)
T PF07798_consen 125 QELKIQELNNKIDTEIANLRTEIESL 150 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65667888888888888888887764
No 255
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=24.65 E-value=5.5e+02 Score=26.49 Aligned_cols=40 Identities=20% Similarity=0.245 Sum_probs=24.2
Q ss_pred HHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhH
Q 012393 162 QEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNL 201 (464)
Q Consensus 162 ~~~isdmEnvIedLK~kVskAESRAe~AEskc~lLteTN~ 201 (464)
-...+.+..-.-++.+.....+.+-+.+..+...|..||+
T Consensus 98 ~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ktNv 137 (314)
T PF04111_consen 98 WREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRKTNV 137 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT--T
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 3345555555556666666666666777777777777775
No 256
>PRK02793 phi X174 lysis protein; Provisional
Probab=24.63 E-value=2.6e+02 Score=23.07 Aligned_cols=54 Identities=15% Similarity=-0.014 Sum_probs=35.4
Q ss_pred HHhhhhhhHHHHHhHHHHHHHHHHHHHhhcchHHHHhhhhHHHhhhhhHHhhhc
Q 012393 38 LKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNL 91 (464)
Q Consensus 38 Lk~kL~~~eqE~~~lEEaa~~~~eR~~EAENasEvL~G~Skel~gkLq~~Qf~L 91 (464)
+..++...|--..|.|..++.++.=.++-......|....+.|.+||...+...
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~~~ 59 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQPSN 59 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 444555555555666667777777667666667777777777777777765443
No 257
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=24.59 E-value=4.5e+02 Score=26.19 Aligned_cols=28 Identities=21% Similarity=0.577 Sum_probs=14.4
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 012393 127 NSEVLTMKEKVKSLEEQLKESEIRLQNA 154 (464)
Q Consensus 127 ~SE~~sL~eKV~sLEeQLkese~Ql~~a 154 (464)
++|.++|..-++.+=.+++..+.++...
T Consensus 30 ~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l 57 (202)
T PF06818_consen 30 DSEIVSLRAQLRELRAELRNKESQIQEL 57 (202)
T ss_pred HhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4555666555555555555555444433
No 258
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=24.13 E-value=8.8e+02 Score=25.73 Aligned_cols=56 Identities=16% Similarity=0.298 Sum_probs=34.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHH
Q 012393 131 LTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKV 193 (464)
Q Consensus 131 ~sL~eKV~sLEeQLkese~Ql~~akas~Ea~~~~isdmEnvIedLK~kVskAESRAe~AEskc 193 (464)
-.|+.++.+|+.+-+....++..-+ .....+..-|..|+..-.++-.+|++=|.-.
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek-------~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~i 78 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEK-------ARCKHLQEENRALREASVRIQAKAEQEEEFI 78 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777665555443322 2334555667777777777777776655543
No 259
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=23.91 E-value=2.2e+02 Score=24.81 Aligned_cols=60 Identities=20% Similarity=0.308 Sum_probs=50.8
Q ss_pred Hhhhhhh-HHHhHHHHhhhHHHHHhhhhhh---HHHHHhHHHHHHHHHHHHHhhcchHHHHhhh
Q 012393 17 SLARELD-LEKKISELNQNEEQLKLKLHHT---EQVAFRMEEAAEVVWGRFLEAENSAEVLMGI 76 (464)
Q Consensus 17 SlA~e~d-LEkkL~es~~~eeeLk~kL~~~---eqE~~~lEEaa~~~~eR~~EAENasEvL~G~ 76 (464)
|+|.|+| +|.++..-+..-+...-+|+.. .+...-||+....+.+++-.-|+-...|++.
T Consensus 2 ~V~~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~LrkE 65 (85)
T PF15188_consen 2 SVAKEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLRKE 65 (85)
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 5677776 9999999999888888888764 4568889999999999999999999888874
No 260
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=23.82 E-value=7.3e+02 Score=25.62 Aligned_cols=82 Identities=26% Similarity=0.316 Sum_probs=64.2
Q ss_pred HHHhhcchHHHHhhhhHHHhhhhhHHhhhccccccchhHHHHHHHhHHHHHhhhhHHHHHhhhcCchhhhhHHHHHHHHH
Q 012393 62 RFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLE 141 (464)
Q Consensus 62 R~~EAENasEvL~G~Skel~gkLq~~Qf~L~as~~REseLksKLk~s~EQLe~k~~~Lekl~~s~~SE~~sL~eKV~sLE 141 (464)
|-++-.-.-..++...+.+...++.++-.|+.....|..|-.|++.---.|+.-..-|+.|.+-++ .-.+-...||
T Consensus 156 r~~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRP----AfmdEyEklE 231 (267)
T PF10234_consen 156 RPLELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRP----AFMDEYEKLE 231 (267)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh----HHHHHHHHHH
Confidence 666666666778888999999999999999999999999999998888888877777888877643 3444445556
Q ss_pred HHHHHH
Q 012393 142 EQLKES 147 (464)
Q Consensus 142 eQLkes 147 (464)
..|+..
T Consensus 232 ~EL~~l 237 (267)
T PF10234_consen 232 EELQKL 237 (267)
T ss_pred HHHHHH
Confidence 555543
No 261
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=23.50 E-value=4.9e+02 Score=29.53 Aligned_cols=25 Identities=24% Similarity=0.322 Sum_probs=14.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHh
Q 012393 128 SEVLTMKEKVKSLEEQLKESEIRLQ 152 (464)
Q Consensus 128 SE~~sL~eKV~sLEeQLkese~Ql~ 152 (464)
.|+..+.+.+..|+.|+.+...+..
T Consensus 304 ~ea~~~l~~~~~l~~ql~~l~~~~~ 328 (726)
T PRK09841 304 LEAKAVLEQIVNVDNQLNELTFREA 328 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666666666555443
No 262
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=23.26 E-value=9.1e+02 Score=25.59 Aligned_cols=56 Identities=21% Similarity=0.170 Sum_probs=43.0
Q ss_pred hhhHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHhhcchHHHHhhhhHHHh-hhhhHH
Q 012393 32 NQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEML-GRFQIV 87 (464)
Q Consensus 32 ~~~eeeLk~kL~~~eqE~~~lEEaa~~~~eR~~EAENasEvL~G~Skel~-gkLq~~ 87 (464)
-.....+..+......-..++.+-...+-.+..++|+..+.++....-.- ++-+..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~l~~lr~~~~~ae~~~~~~~~~~~l~~~~~~~~~ 236 (458)
T COG3206 180 AYLADQLEAQLEAFRRASDSLDERLEELRARLQEAEAQVEDFRAQHGLTDAARGQLL 236 (458)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhH
Confidence 44667777888888888999999999999999999999888876665444 344433
No 263
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=23.10 E-value=5.9e+02 Score=24.18 Aligned_cols=49 Identities=20% Similarity=0.318 Sum_probs=21.7
Q ss_pred HHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHHHhhhhc
Q 012393 164 QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKG 212 (464)
Q Consensus 164 ~isdmEnvIedLK~kVskAESRAe~AEskc~lLteTN~ELneEL~~Lks 212 (464)
+-.++.+-|+.|....-.-+.++.+.-....-|.+...+|+.+++.+..
T Consensus 90 e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~e 138 (158)
T PF09744_consen 90 ERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLHE 138 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444444444433
No 264
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=22.93 E-value=6.1e+02 Score=23.46 Aligned_cols=47 Identities=15% Similarity=0.217 Sum_probs=22.7
Q ss_pred HHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHHHhhh
Q 012393 164 QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFL 210 (464)
Q Consensus 164 ~isdmEnvIedLK~kVskAESRAe~AEskc~lLteTN~ELneEL~~L 210 (464)
+...+..-|.+....+.+.......+...+.-+-..|..|....+.+
T Consensus 92 ~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~ 138 (177)
T PF13870_consen 92 ELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLL 138 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 33444444444444444444444445555555555555555444444
No 265
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=22.84 E-value=3.3e+02 Score=24.60 Aligned_cols=50 Identities=16% Similarity=0.103 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHh
Q 012393 132 TMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYG 181 (464)
Q Consensus 132 sL~eKV~sLEeQLkese~Ql~~akas~Ea~~~~isdmEnvIedLK~kVsk 181 (464)
.|.++|..||.|+...-.++...|..+....++=..+.--|.-|++.+.+
T Consensus 5 elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~ 54 (110)
T PRK13169 5 EIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEE 54 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788888888888777766666655554444444454445555555543
No 266
>PRK02119 hypothetical protein; Provisional
Probab=22.83 E-value=3.1e+02 Score=22.78 Aligned_cols=54 Identities=13% Similarity=0.032 Sum_probs=33.5
Q ss_pred HHhhhhhhHHHHHhHHHHHHHHHHHHHhhcchHHHHhhhhHHHhhhhhHHhhhc
Q 012393 38 LKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNL 91 (464)
Q Consensus 38 Lk~kL~~~eqE~~~lEEaa~~~~eR~~EAENasEvL~G~Skel~gkLq~~Qf~L 91 (464)
+..++...|--..|.|...+.++.-.++---....|....+-|..||...+...
T Consensus 7 ~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~~~~ 60 (73)
T PRK02119 7 LENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQPSN 60 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 444555555555666666666666666666666667777777777776665443
No 267
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=22.48 E-value=2.8e+02 Score=32.10 Aligned_cols=50 Identities=26% Similarity=0.301 Sum_probs=40.8
Q ss_pred HHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHHHhhhhcC
Q 012393 164 QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGN 213 (464)
Q Consensus 164 ~isdmEnvIedLK~kVskAESRAe~AEskc~lLteTN~ELneEL~~Lks~ 213 (464)
.-.+++.+|++|-......|.+.+.++..-..+..-..+|..+...|+.+
T Consensus 514 ~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~ 563 (782)
T PRK00409 514 DKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEE 563 (782)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33488899999999988888888888888888888888888887777664
No 268
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=22.43 E-value=1.4e+03 Score=27.42 Aligned_cols=83 Identities=27% Similarity=0.299 Sum_probs=58.0
Q ss_pred CchhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHH
Q 012393 126 KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSE 205 (464)
Q Consensus 126 ~~SE~~sL~eKV~sLEeQLkese~Ql~~akas~Ea~~~~isdmEnvIedLK~kVskAESRAe~AEskc~lLteTN~ELne 205 (464)
+|.++.-+.+|+.+|-++|.=.+-+++.+-. +++..+-=+.+.+=+ ....+||-+..+.+.....|-+.|.++|.
T Consensus 103 kda~lrq~eekn~slqerLelaE~~l~qs~r-ae~lpeveael~qr~----~al~~aee~~~~~eer~~kl~~~~qe~na 177 (916)
T KOG0249|consen 103 KDADLRQNEEKNRSLQERLELAEPKLQQSLR-AETLPEVEAELAQRN----AALTKAEEHSGNIEERTRKLEEQLEELNA 177 (916)
T ss_pred cchhhchhHHhhhhhhHHHHHhhHhhHhHHh-hhhhhhhHHHHHHHH----HHHHHHHHhhccHHHHHHHHHHHHHHHHH
Confidence 4677778888888888877777777665444 332222111222222 23567888999999999999999999999
Q ss_pred HHhhhhcC
Q 012393 206 EINFLKGN 213 (464)
Q Consensus 206 EL~~Lks~ 213 (464)
||...+.+
T Consensus 178 eL~rarqr 185 (916)
T KOG0249|consen 178 ELQRARQR 185 (916)
T ss_pred HHHHHHHH
Confidence 99888875
No 269
>PRK10698 phage shock protein PspA; Provisional
Probab=22.38 E-value=7.5e+02 Score=24.28 Aligned_cols=88 Identities=10% Similarity=0.198 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHHHhhhhcCCCCcc
Q 012393 139 SLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNT 218 (464)
Q Consensus 139 sLEeQLkese~Ql~~akas~Ea~~~~isdmEnvIedLK~kVskAESRAe~AEskc~lLteTN~ELneEL~~Lks~~s~~~ 218 (464)
..++++..++.++....+..+.....+..|++-|.+.|.+-.--=.|...|.++ ..+++-++.+.+. +..
T Consensus 96 ~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~--------~~~~~~~~~~~~~--~a~ 165 (222)
T PRK10698 96 KLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSS--------RDVRRQLDSGKLD--EAM 165 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHhCCCcc--hHH
Confidence 345666666666666666666566666666666666665554444455555444 3445555544432 234
Q ss_pred hhhhhhHHHHhhHHHHHH
Q 012393 219 KKVGILENQLRDLEIQLQ 236 (464)
Q Consensus 219 ek~~~LE~qLkese~QLq 236 (464)
.+.+.+|.++.+.+.+.+
T Consensus 166 ~~f~rmE~ki~~~Ea~ae 183 (222)
T PRK10698 166 ARFESFERRIDQMEAEAE 183 (222)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 566677777776554444
No 270
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=22.32 E-value=4.8e+02 Score=22.03 Aligned_cols=55 Identities=20% Similarity=0.212 Sum_probs=43.8
Q ss_pred hhccchhhhhhhhhhhhHHHHHHHhhHHHHHH--H-HhhHHHHHHHhHHHHHHHHHHH
Q 012393 287 LSEDNFELKNKQSFMRDKIKILESSLNRANIE--K-AASAKEVNHRTKLMMEMVMQLA 341 (464)
Q Consensus 287 LsEtN~eLneELsflrskl~~LE~sL~~A~~~--K-~~TakdI~~~tK~i~dLV~qLa 341 (464)
+...-.+|...|..++.-+++|+.....+... | --+..||.-|...|.++-.++.
T Consensus 37 ~~~~~~eL~~~l~~ie~~L~DL~~aV~ive~np~kF~l~~~Ei~~Rr~fv~~~~~~i~ 94 (97)
T PF09177_consen 37 LKWLKRELRNALQSIEWDLEDLEEAVRIVEKNPSKFNLSEEEISRRRQFVSAIRNQIK 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHT-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCHHHHHHHHHHHHHHHHHHH
Confidence 44556789999999999999999998886554 3 3589999999999998877764
No 271
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=21.91 E-value=1e+02 Score=27.83 Aligned_cols=26 Identities=27% Similarity=0.307 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHh
Q 012393 341 ATQRELIQKQVYSLTSENKLLVEKLQ 366 (464)
Q Consensus 341 a~ERErL~~Qissl~~eNkiL~~k~k 366 (464)
..|-.||++.+..|.+|||+|..|+.
T Consensus 71 ~~e~~rlkkk~~~LeEENNlLklKie 96 (108)
T cd07429 71 GREVLRLKKKNQQLEEENNLLKLKIE 96 (108)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999999999988874
No 272
>smart00340 HALZ homeobox associated leucin zipper.
Probab=21.76 E-value=51 Score=25.69 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=18.8
Q ss_pred hhhhhhccchhhhhhhhhhhh
Q 012393 283 QCIVLSEDNFELKNKQSFMRD 303 (464)
Q Consensus 283 kc~~LsEtN~eLneELsflrs 303 (464)
=|-.||+.|..|..|+.-||+
T Consensus 13 cce~LteeNrRL~ke~~eLra 33 (44)
T smart00340 13 CCESLTEENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 388999999999999998885
No 273
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=21.71 E-value=8.4e+02 Score=24.60 Aligned_cols=15 Identities=7% Similarity=-0.137 Sum_probs=10.3
Q ss_pred HHhhcCCCCCceecc
Q 012393 364 KLQYSGKSSSATMYN 378 (464)
Q Consensus 364 k~k~~~~~~~~~~~~ 378 (464)
.+..+.+.+|+.|+-
T Consensus 205 ~l~~~~I~AP~dG~V 219 (346)
T PRK10476 205 HLEDTTVRAPFDGRV 219 (346)
T ss_pred HhhcCEEECCCCcEE
Confidence 345677788887764
No 274
>PRK00846 hypothetical protein; Provisional
Probab=21.63 E-value=3.3e+02 Score=23.28 Aligned_cols=60 Identities=15% Similarity=0.080 Sum_probs=40.2
Q ss_pred HHHHhhhhhhHHHHHhHHHHHHHHHHHHHhhcchHHHHhhhhHHHhhhhhHHhhhccccc
Q 012393 36 EQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSL 95 (464)
Q Consensus 36 eeLk~kL~~~eqE~~~lEEaa~~~~eR~~EAENasEvL~G~Skel~gkLq~~Qf~L~as~ 95 (464)
..+..++...|--..|.|..++.++.-...---....|.--.+-|.+||..++...-++.
T Consensus 9 ~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~~s~~~~~ 68 (77)
T PRK00846 9 QALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRSTLFADP 68 (77)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCC
Confidence 344455555555556666677777666666666777777778888888888886654443
No 275
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.60 E-value=9.1e+02 Score=25.01 Aligned_cols=50 Identities=18% Similarity=0.152 Sum_probs=29.4
Q ss_pred HHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 012393 315 ANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKL 365 (464)
Q Consensus 315 A~~~K~~TakdI~~~tK~i~dLV~qLa~ERErL~~Qissl~~eNkiL~~k~ 365 (464)
...+-..-.+++..+..--.+++.+++..--..+.-...|. +=+-+++..
T Consensus 177 l~~e~e~~~~~L~~qk~e~~~l~~~~aa~~a~~~~e~a~l~-~qka~a~a~ 226 (265)
T COG3883 177 LQNELETQLNSLNSQKAEKNALIAALAAKEASALGEKAALE-EQKALAEAA 226 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHH
Confidence 33333344455555555667777777777777777777666 444444443
No 276
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.31 E-value=1.3e+03 Score=26.70 Aligned_cols=99 Identities=17% Similarity=0.243 Sum_probs=59.9
Q ss_pred hHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHHHhhhhcCCCC--------------cchhhhhhHH
Q 012393 161 SQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDS--------------NTKKVGILEN 226 (464)
Q Consensus 161 ~~~~isdmEnvIedLK~kVskAESRAe~AEskc~lLteTN~ELneEL~~Lks~~s~--------------~~ek~~~LE~ 226 (464)
-+++|-.++.-+.|||++|.--..----+++.. ..|+++.+.|.+.|.. .+++.+-+|.
T Consensus 329 ~~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl-------~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~ 401 (654)
T KOG4809|consen 329 RLEEIESFRKENKDLKEKVNALQAELTEKESSL-------IDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEA 401 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 567888999999999999976543222222222 3455566666555431 1556666677
Q ss_pred HHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHhhhhhhh
Q 012393 227 QLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAE 274 (464)
Q Consensus 227 qLkese~QLqhA~As~eAs~eqQ~mL~stikDME~vIeDLksKv~kaE 274 (464)
+|+....-+..|.++-+..-. |+|+|.-+...+.-++++.
T Consensus 402 qLkkAh~~~ddar~~pe~~d~--------i~~le~e~~~y~de~~kaq 441 (654)
T KOG4809|consen 402 QLKKAHNIEDDARMNPEFADQ--------IKQLEKEASYYRDECGKAQ 441 (654)
T ss_pred HHHHHHHhhHhhhcChhhHHH--------HHHHHHHHHHHHHHHHHHH
Confidence 777666666666655555444 8888866555555455444
No 277
>PRK02119 hypothetical protein; Provisional
Probab=21.30 E-value=4.8e+02 Score=21.65 Aligned_cols=53 Identities=15% Similarity=0.157 Sum_probs=39.5
Q ss_pred hhhhhhhHHHHHHHhhHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhh
Q 012393 297 KQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQY 367 (464)
Q Consensus 297 ELsflrskl~~LE~sL~~A~~~K~~TakdI~~~tK~i~dLV~qLa~ERErL~~Qissl~~eNkiL~~k~k~ 367 (464)
|+..+..|+.+||..+ -.-+|++..|..-.=+-+.+|..|...-+.|..+++.
T Consensus 3 ~~~~~e~Ri~~LE~rl------------------a~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 3 IQQNLENRIAELEMKI------------------AFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred chHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455666666666544 4556777788888888888899999888999999986
No 278
>TIGR00833 actII Transport protein. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate.
Probab=21.01 E-value=1.4e+03 Score=26.86 Aligned_cols=12 Identities=17% Similarity=0.376 Sum_probs=7.8
Q ss_pred ccceeeecCCCC
Q 012393 419 LNICRIYTRGLA 430 (464)
Q Consensus 419 ~~~~~~~~~~~~ 430 (464)
..-.++|.-|.+
T Consensus 721 ~~~~~~~vtG~~ 732 (910)
T TIGR00833 721 LEPAKVELAGVS 732 (910)
T ss_pred CCCCEEEEeChh
Confidence 334677877765
No 279
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=20.96 E-value=3.7e+02 Score=22.42 Aligned_cols=51 Identities=25% Similarity=0.312 Sum_probs=28.1
Q ss_pred HHhhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhhhhhhhhhhHHHHHHHhh
Q 012393 255 AIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSL 312 (464)
Q Consensus 255 tikDME~vIeDLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrskl~~LE~sL 312 (464)
||.-+..=|++|+.|..... +.-.-|-+.|-.|.+|-....+|+..|=+++
T Consensus 19 ti~~Lq~e~eeLke~n~~L~-------~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl 69 (72)
T PF06005_consen 19 TIALLQMENEELKEKNNELK-------EENEELKEENEQLKQERNAWQERLRSLLGKL 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444555555544333 3355666667777777666666766654444
No 280
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=20.88 E-value=5.4e+02 Score=22.10 Aligned_cols=65 Identities=17% Similarity=0.247 Sum_probs=40.6
Q ss_pred HHhHHHHHhhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhhhhhhhhhhHHHHHHHhhH
Q 012393 249 QSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLN 313 (464)
Q Consensus 249 Q~mL~stikDME~vIeDLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrskl~~LE~sL~ 313 (464)
+..|...+--....|.+-..|...|..+|+.....+.-....=..|..+|+.++++...++..+.
T Consensus 41 e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~ 105 (126)
T PF13863_consen 41 EQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLE 105 (126)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555566677888888888888777666666555555555555566666665555555444
No 281
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=20.81 E-value=3.2e+02 Score=25.59 Aligned_cols=38 Identities=26% Similarity=0.293 Sum_probs=30.1
Q ss_pred HHHHHhhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhc
Q 012393 252 LYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSE 289 (464)
Q Consensus 252 L~stikDME~vIeDLksKv~kaE~rae~~E~kc~~LsE 289 (464)
..........-|++|+.++.+++...+..-+|+-+|++
T Consensus 152 ~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 152 LKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556677788889999999988888888888887764
No 282
>PRK04406 hypothetical protein; Provisional
Probab=20.79 E-value=3.9e+02 Score=22.37 Aligned_cols=52 Identities=12% Similarity=0.069 Sum_probs=36.0
Q ss_pred HHhhhhhhHHHHHhHHHHHHHHHHHHHhhcchHHHHhhhhHHHhhhhhHHhh
Q 012393 38 LKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQF 89 (464)
Q Consensus 38 Lk~kL~~~eqE~~~lEEaa~~~~eR~~EAENasEvL~G~Skel~gkLq~~Qf 89 (464)
+..++...|--..|.|..++.++.-.++---....|....+.|.+||...+.
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~~ 60 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMDS 60 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4445555555556667777777777777777777888888888888877654
No 283
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=20.64 E-value=1.7e+03 Score=27.69 Aligned_cols=136 Identities=15% Similarity=0.243 Sum_probs=60.1
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHhhh------------hhchhh-hHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHH
Q 012393 127 NSEVLTMKEKVKSLEEQLKESEIRLQNA------------NACFQT-SQEQLNEMDNFIESLKESLYGAESRAESAEEKV 193 (464)
Q Consensus 127 ~SE~~sL~eKV~sLEeQLkese~Ql~~a------------kas~Ea-~~~~isdmEnvIedLK~kVskAESRAe~AEskc 193 (464)
.|...+|.++-..+=++|+..+.+.... +..-+. ...++..+-..|.+.|+.... .-
T Consensus 348 ~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~~~ke~e~~----------lq 417 (1200)
T KOG0964|consen 348 EPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGINDTKEQENI----------LQ 417 (1200)
T ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHhhhhhHHHH----------HH
Confidence 3556666666666655555555543211 111111 244666666666666654433 23
Q ss_pred HhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHhhhhhh
Q 012393 194 TQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKA 273 (464)
Q Consensus 194 ~lLteTN~ELneEL~~Lks~~s~~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~mL~stikDME~vIeDLksKv~ka 273 (464)
+-+.+++.+|++.+..++.-.+ -.+....++.+++.-.-+-+---++.+..+.-|...=+-+-.+|+-++.-++.+
T Consensus 418 ~e~~~~e~~l~~~~e~i~~l~~----si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~ 493 (1200)
T KOG0964|consen 418 KEIEDLESELKEKLEEIKELES----SINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRA 493 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh----hHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555444443211 022333333333333333332223333323223222223335555566666655
Q ss_pred hhh
Q 012393 274 ESK 276 (464)
Q Consensus 274 E~r 276 (464)
+.+
T Consensus 494 ~~~ 496 (1200)
T KOG0964|consen 494 EKN 496 (1200)
T ss_pred HHH
Confidence 544
No 284
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=20.46 E-value=1e+03 Score=25.25 Aligned_cols=132 Identities=18% Similarity=0.167 Sum_probs=78.8
Q ss_pred hHHHHHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHhh-hhhhhhhhhhhhhhhhhhhccchhhhhhhhhhhhHHHHH
Q 012393 230 DLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSK-VSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKIL 308 (464)
Q Consensus 230 ese~QLqhA~As~eAs~eqQ~mL~stikDME~vIeDLksK-v~kaE~rae~~E~kc~~LsEtN~eLneELsflrskl~~L 308 (464)
.+...|++|+|...+...+..-+.+.+.-+...|+--+.+ +..+....+++. -|...+.-= +..++..
T Consensus 88 ~y~~al~qAea~la~a~~~~~~~~a~~~~~~A~i~~a~a~~l~~a~~~~~R~~----~L~~~g~vs-------~~~~~~a 156 (352)
T COG1566 88 DYRAALEQAEAALAAAEAQLRNLRAQLASAQALIAQAEAQDLDQAQNELERRA----ELAQRGVVS-------REELDRA 156 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhcCccc-------HHHHHHH
Confidence 4556777777777777766666777777777777777775 666665544432 222222222 3444444
Q ss_pred HHhhHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhcCCCCCceeccc
Q 012393 309 ESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSGKSSSATMYNA 379 (464)
Q Consensus 309 E~sL~~A~~~K~~TakdI~~~tK~i~dLV~qLa~ERErL~~Qissl~~eNkiL~~k~k~~~~~~~~~~~~~ 379 (464)
.+-+++|...-.... .....=...|..++...|.|+-+..-.-..=.-.+..|.+.+|+.||-.
T Consensus 157 ~~a~~~A~A~~~~a~-------~~~~~~~~~l~~~~~~~~~~v~~a~a~~~~A~l~L~~T~IrAP~dG~V~ 220 (352)
T COG1566 157 RAALQAAEAALAAAQ-------AAQKQNLALLESEVSGAQAQVASAEAALDQAKLDLERTVIRAPVDGYVT 220 (352)
T ss_pred HHHHHHHHHHHHHhH-------HHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHhhCCEEECCCCceEE
Confidence 444444433322222 1112223445566777778888876666666677888999999999863
No 285
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=20.46 E-value=4e+02 Score=28.76 Aligned_cols=104 Identities=18% Similarity=0.289 Sum_probs=54.9
Q ss_pred cchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccc-hhhh
Q 012393 217 NTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDN-FELK 295 (464)
Q Consensus 217 ~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~mL~stikDME~vIeDLksKv~kaE~rae~~E~kc~~LsEtN-~eLn 295 (464)
.++++..|+.+|+..+.++..+.+...+-+.+.. +++.+..+.. .. ....| ..+... .++.
T Consensus 69 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~-----------~l~~~~~~~~-~~-----~~~~~-~~~~~~~~~~~ 130 (525)
T TIGR02231 69 DPERLAELRKQIRELEAELRDLEDRGDALKALAK-----------FLEDIREGLT-EP-----IKDSA-KRNEPDLKEWF 130 (525)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHhhhhc-cc-----ccccc-ccCCCCHHHHH
Confidence 3578888999999887777777765555544333 2333332211 00 00001 111111 2577
Q ss_pred hhhhhhhhHHHHHHHhhHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012393 296 NKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTS 356 (464)
Q Consensus 296 eELsflrskl~~LE~sL~~A~~~K~~TakdI~~~tK~i~dLV~qLa~ERErL~~Qissl~~ 356 (464)
+=+.||+.++..+-..+..+.. -..++..+.++|+.++..+..
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 131 QAFDFNGSEIERLLTEDREAER------------------RIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHhhcc
Confidence 8888898887655544332222 224445555556666655554
No 286
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=20.28 E-value=34 Score=39.96 Aligned_cols=51 Identities=35% Similarity=0.371 Sum_probs=39.4
Q ss_pred HHhhhhhcccccceeeecCCCCchHHHH-----HHHHHHHHHHHHHHHhhhccceeee
Q 012393 409 LMKSVQAGTHLNICRIYTRGLAYPEFVK-----KVIAMMMILLILIMSYTITGLTFQV 461 (464)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (464)
.|+.||-.+|.|--+ +||.+||+|++ ++|+|--+-+.-=++..|.|..||.
T Consensus 693 ~~e~vqi~~h~n~~~--~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK~~v~i~g~pf~g 748 (881)
T KOG0128|consen 693 TIEVVQIVIHKNEKR--FRGKAYVEFLKPEHAGAAVAFRDSCFFGKISVAISGPPFQG 748 (881)
T ss_pred hhhhHHHHHHhhccc--cccceeeEeecCCchhhhhhhhhhhhhhhhhhheeCCCCCC
Confidence 367788888887655 57999999975 6777776666667788889998885
No 287
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=20.18 E-value=7.6e+02 Score=23.53 Aligned_cols=51 Identities=24% Similarity=0.252 Sum_probs=37.6
Q ss_pred hhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHhhh
Q 012393 220 KVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKV 270 (464)
Q Consensus 220 k~~~LE~qLkese~QLqhA~As~eAs~eqQ~mL~stikDME~vIeDLksKv 270 (464)
|-+-||++|+.+..-++.|---+.-..-=-+.|-+-+.++...|+|++.|-
T Consensus 106 rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v~~~~e~~~~~q 156 (159)
T PF05384_consen 106 RRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQVSEQIEDAQQKQ 156 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 467899999988888888775555444334456667888889999988763
No 288
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=20.08 E-value=3.4e+02 Score=31.45 Aligned_cols=79 Identities=24% Similarity=0.270 Sum_probs=54.2
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhH
Q 012393 167 EMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQ 246 (464)
Q Consensus 167 dmEnvIedLK~kVskAESRAe~AEskc~lLteTN~ELneEL~~Lks~~s~~~ek~~~LE~qLkese~QLqhA~As~eAs~ 246 (464)
+++.+|++|-......|.+.+.++..-..+.....+|.+++..|+.. |-..+++ |..
T Consensus 512 ~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~------~~~~~~~-----------------a~~ 568 (771)
T TIGR01069 512 EINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKER------ERNKKLE-----------------LEK 568 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHH-----------------HHH
Confidence 78888999988888888888888888888777777777777777664 2233322 233
Q ss_pred HHHHhHHHHHhhHHHHHHHHHh
Q 012393 247 EQQSMLYSAIWDMETLIEDLKS 268 (464)
Q Consensus 247 eqQ~mL~stikDME~vIeDLks 268 (464)
+-+.++..+-+..+.+|.+++.
T Consensus 569 ea~~~~~~a~~~~~~~i~~lk~ 590 (771)
T TIGR01069 569 EAQEALKALKKEVESIIRELKE 590 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444555566777777775
Done!