Query 012393
Match_columns 464
No_of_seqs 58 out of 60
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 08:34:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012393.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012393hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 98.7 4.4E-05 1.5E-09 66.8 29.5 54 35-88 15-68 (284)
2 1c1g_A Tropomyosin; contractIl 98.6 0.00017 5.7E-09 63.2 28.6 9 343-351 273-281 (284)
3 1i84_S Smooth muscle myosin he 98.2 1.2E-06 4.2E-11 98.2 6.3 17 293-309 1148-1164(1184)
4 1i84_S Smooth muscle myosin he 98.2 2.1E-06 7.1E-11 96.4 7.8 94 255-359 1075-1168(1184)
5 2efr_A General control protein 97.8 0.00021 7.3E-09 65.1 12.7 150 136-299 1-150 (155)
6 2efr_A General control protein 97.1 0.022 7.4E-07 51.9 15.8 81 132-212 39-119 (155)
7 2b9c_A Striated-muscle alpha t 96.6 0.018 6.1E-07 51.8 11.0 141 81-232 2-142 (147)
8 3vkg_A Dynein heavy chain, cyt 95.4 1.8 6.1E-05 54.4 24.2 28 334-361 2076-2103(3245)
9 3na7_A HP0958; flagellar bioge 95.1 0.57 2E-05 44.2 14.9 92 132-238 29-123 (256)
10 3o0z_A RHO-associated protein 95.0 1 3.5E-05 41.7 15.7 127 215-362 2-138 (168)
11 3na7_A HP0958; flagellar bioge 93.8 2.2 7.5E-05 40.3 15.7 109 83-196 12-123 (256)
12 2b9c_A Striated-muscle alpha t 93.3 0.29 1E-05 43.9 8.3 128 180-328 13-140 (147)
13 3o0z_A RHO-associated protein 92.8 3.3 0.00011 38.3 14.6 21 133-153 4-24 (168)
14 2v71_A Nuclear distribution pr 91.8 7.9 0.00027 36.3 16.2 145 44-209 7-155 (189)
15 3u1c_A Tropomyosin alpha-1 cha 91.1 1.9 6.5E-05 36.1 10.2 53 127-179 43-95 (101)
16 2fxo_A Myosin heavy chain, car 90.0 6.9 0.00024 33.7 13.1 48 258-312 80-127 (129)
17 2v71_A Nuclear distribution pr 89.5 14 0.00047 34.7 16.2 75 128-212 3-77 (189)
18 2dfs_A Myosin-5A; myosin-V, in 89.1 2.1 7.3E-05 48.5 11.6 83 74-157 920-1006(1080)
19 2fxo_A Myosin heavy chain, car 88.4 12 0.0004 32.3 13.6 80 257-336 44-123 (129)
20 2dfs_A Myosin-5A; myosin-V, in 87.1 5.4 0.00018 45.3 13.3 35 254-288 984-1018(1080)
21 3u1c_A Tropomyosin alpha-1 cha 83.6 15 0.00051 30.7 11.2 68 171-245 10-77 (101)
22 3oja_B Anopheles plasmodium-re 83.2 12 0.00041 38.0 12.5 18 296-313 565-582 (597)
23 3tnu_B Keratin, type II cytosk 82.8 4.2 0.00014 35.0 7.8 82 199-304 44-125 (129)
24 3u59_A Tropomyosin beta chain; 81.8 9.9 0.00034 31.5 9.4 50 127-176 43-92 (101)
25 1ic2_A Tropomyosin alpha chain 81.3 4.9 0.00017 32.2 7.1 61 172-239 8-68 (81)
26 3u59_A Tropomyosin beta chain; 80.9 7.9 0.00027 32.1 8.5 63 172-241 11-73 (101)
27 3tnu_A Keratin, type I cytoske 78.9 5.5 0.00019 34.4 7.2 90 192-305 39-128 (131)
28 3s4r_A Vimentin; alpha-helix, 78.3 15 0.0005 30.5 9.3 66 130-198 18-84 (93)
29 1m1j_B Fibrinogen beta chain; 78.1 22 0.00074 37.3 12.5 103 167-285 97-199 (464)
30 2k48_A Nucleoprotein; viral pr 77.6 2 6.7E-05 37.3 3.9 75 73-148 26-102 (107)
31 3oja_B Anopheles plasmodium-re 76.5 10 0.00036 38.4 9.5 53 161-213 528-580 (597)
32 3vkg_A Dynein heavy chain, cyt 71.9 2.3E+02 0.0079 36.4 24.3 78 49-148 1868-1954(3245)
33 1ic2_A Tropomyosin alpha chain 71.6 18 0.00063 28.8 8.0 69 164-239 7-75 (81)
34 1x8y_A Lamin A/C; structural p 70.3 11 0.00039 30.6 6.6 79 205-307 3-81 (86)
35 3bas_A Myosin heavy chain, str 68.9 22 0.00077 29.0 8.1 27 186-212 58-84 (89)
36 3mq9_A Bone marrow stromal ant 68.7 14 0.00047 36.7 8.1 73 168-243 395-467 (471)
37 3i00_A HIP-I, huntingtin-inter 68.2 16 0.00056 31.8 7.5 104 92-198 6-113 (120)
38 2ic6_A Nucleocapsid protein; h 67.2 7.4 0.00025 32.1 4.8 67 74-148 4-72 (78)
39 1gk4_A Vimentin; intermediate 63.7 17 0.00057 29.4 6.3 78 206-307 2-79 (84)
40 2jee_A YIIU; FTSZ, septum, coi 63.2 20 0.00069 29.6 6.7 60 253-312 19-78 (81)
41 3swk_A Vimentin; cytoskeleton, 59.9 53 0.0018 26.7 8.7 74 132-212 4-84 (86)
42 2ic9_A Nucleocapsid protein; h 58.7 12 0.00041 32.0 4.7 68 74-149 4-73 (96)
43 2jee_A YIIU; FTSZ, septum, coi 53.8 29 0.001 28.7 6.1 53 161-213 18-70 (81)
44 3cve_A Homer protein homolog 1 53.3 52 0.0018 26.6 7.4 33 127-159 13-45 (72)
45 3qh9_A Liprin-beta-2; coiled-c 51.6 59 0.002 27.0 7.6 54 293-353 23-79 (81)
46 2v66_B Nuclear distribution pr 50.2 1.3E+02 0.0043 26.1 11.8 95 96-208 3-101 (111)
47 3htk_A Structural maintenance 49.6 58 0.002 24.1 6.8 50 130-179 7-56 (60)
48 3hnw_A Uncharacterized protein 49.4 42 0.0014 29.6 6.9 47 164-210 83-129 (138)
49 3mq9_A Bone marrow stromal ant 49.1 1.5E+02 0.0051 29.3 11.6 112 9-159 356-467 (471)
50 1x79_B RAB GTPase binding effe 48.5 1E+02 0.0036 26.7 9.0 73 287-366 36-108 (112)
51 3cvf_A Homer-3, homer protein 46.3 52 0.0018 27.0 6.5 33 127-159 19-51 (79)
52 1gd2_E Transcription factor PA 44.9 31 0.0011 27.5 4.9 46 316-361 24-69 (70)
53 3hnw_A Uncharacterized protein 44.9 1E+02 0.0035 27.1 8.6 30 128-157 68-97 (138)
54 3ol1_A Vimentin; structural ge 44.9 1.4E+02 0.0049 25.3 11.5 24 249-272 36-59 (119)
55 3bas_A Myosin heavy chain, str 44.7 1E+02 0.0035 25.0 8.0 48 252-306 40-87 (89)
56 1t2k_D Cyclic-AMP-dependent tr 42.3 25 0.00085 26.6 3.8 36 277-312 24-59 (61)
57 2wt7_A Proto-oncogene protein 40.3 31 0.0011 26.4 4.1 37 277-313 25-61 (63)
58 4emc_A Monopolin complex subun 38.6 32 0.0011 32.4 4.6 45 108-152 11-65 (190)
59 3s4r_A Vimentin; alpha-helix, 38.3 1E+02 0.0034 25.4 7.1 44 218-271 22-66 (93)
60 2v4h_A NF-kappa-B essential mo 38.1 2E+02 0.0069 25.0 9.2 51 99-150 27-77 (110)
61 3htk_B Structural maintenance 37.3 1.1E+02 0.0038 23.7 6.9 65 134-198 3-67 (73)
62 3a7p_A Autophagy protein 16; c 36.5 2.1E+02 0.007 26.2 9.4 108 222-348 38-145 (152)
63 1gk4_A Vimentin; intermediate 36.5 1.6E+02 0.0056 23.5 9.6 73 129-211 2-74 (84)
64 2ocy_A RAB guanine nucleotide 34.9 2.6E+02 0.0089 25.4 14.8 30 251-280 119-148 (154)
65 3t98_B Nucleoporin NUP58/NUP45 34.4 1.4E+02 0.0048 24.9 7.4 63 294-356 17-79 (93)
66 3mq7_A Bone marrow stromal ant 33.9 1.3E+02 0.0045 26.5 7.4 24 220-243 72-95 (121)
67 3mov_A Lamin-B1; LMNB1, B-type 33.0 66 0.0022 26.8 5.2 77 206-306 13-89 (95)
68 4fi5_A Nucleoprotein; structur 32.6 51 0.0017 28.9 4.6 64 78-149 25-90 (113)
69 3mov_A Lamin-B1; LMNB1, B-type 32.0 97 0.0033 25.8 6.1 78 124-211 8-85 (95)
70 4emc_A Monopolin complex subun 31.8 1.1E+02 0.0038 28.8 7.1 27 182-208 11-37 (190)
71 4i1l_A Scurfin, forkhead box p 31.5 91 0.0031 26.5 5.8 41 314-354 36-76 (93)
72 1m1j_B Fibrinogen beta chain; 30.0 2.3E+02 0.0079 29.7 9.8 31 163-193 168-198 (464)
73 3qh9_A Liprin-beta-2; coiled-c 29.1 1.6E+02 0.0053 24.5 6.7 53 128-180 26-78 (81)
74 2e7s_A RAB guanine nucleotide 26.9 1.1E+02 0.0037 27.4 5.8 16 225-240 102-117 (135)
75 3m48_A General control protein 26.8 40 0.0014 23.9 2.4 28 185-212 1-28 (33)
76 1x8y_A Lamin A/C; structural p 26.6 1.9E+02 0.0065 23.3 6.8 74 128-211 3-76 (86)
77 3tnu_A Keratin, type I cytoske 25.8 3.1E+02 0.011 23.3 9.9 84 127-210 37-124 (131)
78 3cvf_A Homer-3, homer protein 25.7 1.2E+02 0.0042 24.8 5.5 52 128-179 6-61 (79)
79 3tnu_B Keratin, type II cytosk 25.1 3.1E+02 0.011 23.2 10.4 84 128-211 36-123 (129)
80 1t2k_D Cyclic-AMP-dependent tr 24.8 98 0.0033 23.3 4.5 28 186-213 24-51 (61)
81 4e61_A Protein BIM1; EB1-like 23.4 2.1E+02 0.0072 24.7 6.8 35 234-268 26-60 (106)
82 2oxj_A Hybrid alpha/beta pepti 23.1 58 0.002 23.2 2.6 28 185-212 2-29 (34)
83 3iv1_A Tumor susceptibility ge 22.9 3.1E+02 0.011 22.4 8.8 43 320-362 31-73 (78)
84 2oqq_A Transcription factor HY 22.8 1.6E+02 0.0055 21.8 5.0 20 347-366 22-41 (42)
85 3swk_A Vimentin; cytoskeleton, 22.5 3.1E+02 0.011 22.2 8.4 72 286-361 11-82 (86)
86 3jsv_C NF-kappa-B essential mo 22.3 3.6E+02 0.012 22.9 8.1 52 99-151 5-56 (94)
87 1jnm_A Proto-oncogene C-JUN; B 22.1 29 0.00098 26.4 1.0 30 281-310 28-57 (62)
88 2e7s_A RAB guanine nucleotide 22.1 1E+02 0.0034 27.6 4.6 29 165-193 41-69 (135)
89 3iv1_A Tumor susceptibility ge 22.0 2.3E+02 0.0077 23.3 6.4 58 233-297 18-75 (78)
90 1lwu_C Fibrinogen gamma chain; 22.0 1.3E+02 0.0043 30.1 5.9 46 135-180 5-50 (323)
91 3efg_A Protein SLYX homolog; x 21.9 1.9E+02 0.0063 23.3 5.8 43 325-367 18-60 (78)
92 3cve_A Homer protein homolog 1 21.7 2.6E+02 0.009 22.5 6.6 49 132-180 4-56 (72)
93 3c3g_A Alpha/beta peptide with 21.2 67 0.0023 22.7 2.6 28 185-212 1-28 (33)
94 1uo4_A General control protein 21.2 63 0.0021 23.0 2.5 28 185-212 2-29 (34)
95 1gd2_E Transcription factor PA 20.9 1.3E+02 0.0046 23.9 4.7 40 164-210 30-69 (70)
96 3a7o_A Autophagy protein 16; c 20.5 3.5E+02 0.012 22.1 7.4 26 342-367 46-71 (75)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.74 E-value=4.4e-05 Score=66.81 Aligned_cols=54 Identities=7% Similarity=-0.003 Sum_probs=21.3
Q ss_pred HHHHHhhhhhhHHHHHhHHHHHHHHHHHHHhhcchHHHHhhhhHHHhhhhhHHh
Q 012393 35 EEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQ 88 (464)
Q Consensus 35 eeeLk~kL~~~eqE~~~lEEaa~~~~eR~~EAENasEvL~G~Skel~gkLq~~Q 88 (464)
...+...+..++.+...++.....+...+-++....+-+......+...++..+
T Consensus 15 ~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (284)
T 1c1g_A 15 KENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQ 68 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444443333333333333333333333333333333
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.60 E-value=0.00017 Score=63.17 Aligned_cols=9 Identities=0% Similarity=0.047 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 012393 343 QRELIQKQV 351 (464)
Q Consensus 343 ERErL~~Qi 351 (464)
+.+.+..++
T Consensus 273 ~~~~~~~~L 281 (284)
T 1c1g_A 273 ELDHALNDM 281 (284)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 333333333
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.19 E-value=1.2e-06 Score=98.18 Aligned_cols=17 Identities=6% Similarity=0.159 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhHHHHHH
Q 012393 293 ELKNKQSFMRDKIKILE 309 (464)
Q Consensus 293 eLneELsflrskl~~LE 309 (464)
+|..++.-++.+++.+.
T Consensus 1148 ~L~~ele~L~~~Ieel~ 1164 (1184)
T 1i84_S 1148 DLSEELEALKTELEDTL 1164 (1184)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34444444444444443
No 4
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.18 E-value=2.1e-06 Score=96.38 Aligned_cols=94 Identities=13% Similarity=0.140 Sum_probs=0.0
Q ss_pred HHhhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHhhHHHHHHHhHHHH
Q 012393 255 AIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMM 334 (464)
Q Consensus 255 tikDME~vIeDLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrskl~~LE~sL~~A~~~K~~TakdI~~~tK~i~ 334 (464)
.+.+++.-+.+++.++...+.+.+.+..+.--+.+.-..+..++.-++.+++.++..|..... +..-..
T Consensus 1075 el~el~~el~~le~~l~~le~el~~l~~~le~l~~~~~~le~~l~~Le~eie~L~eeLee~~~-----------~~~~le 1143 (1184)
T 1i84_S 1075 QIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKA-----------ARNKAE 1143 (1184)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHH
Confidence 344444445555555555555544444444433344445555555555555555555444311 111112
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhh
Q 012393 335 EMVMQLATQRELIQKQVYSLTSENK 359 (464)
Q Consensus 335 dLV~qLa~ERErL~~Qissl~~eNk 359 (464)
.-...|..+.+.|..+|..+...|.
T Consensus 1144 ~q~~~L~~ele~L~~~Ieel~~vn~ 1168 (1184)
T 1i84_S 1144 KQKRDLSEELEALKTELEDTLDTTA 1168 (1184)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 2233555666777777776655543
No 5
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=97.83 E-value=0.00021 Score=65.06 Aligned_cols=150 Identities=23% Similarity=0.306 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHHHhhhhcCCC
Q 012393 136 KVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNND 215 (464)
Q Consensus 136 KV~sLEeQLkese~Ql~~akas~Ea~~~~isdmEnvIedLK~kVskAESRAe~AEskc~lLteTN~ELneEL~~Lks~~s 215 (464)
++..||.||++. ...|.-..+ +++- +-..+.+||.|++.|+++|..|-+.--....-|..|.-+..
T Consensus 1 r~~~lE~qlkea---ae~ad~Kye----EvaR-------~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~see 66 (155)
T 2efr_A 1 RMKQLEDKVEEL---LSKNYHLEN----EVAR-------LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAE 66 (155)
T ss_dssp CHHHHHHHHHHH---HHHHHHHHH----HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH---HHHhHHHHH----HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhh
Confidence 367889999987 222222211 2222 77788999999999999999887765555544555544433
Q ss_pred CcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhh
Q 012393 216 SNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELK 295 (464)
Q Consensus 216 ~~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~mL~stikDME~vIeDLksKv~kaE~rae~~E~kc~~LsEtN~eLn 295 (464)
..++|-..+|.+|+.+..+|..|..-++...-.=..|-.+|.|+|.-+..-|.|+.......+.+=.....+...|-.|+
T Consensus 67 kasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~ 146 (155)
T 2efr_A 67 KYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLE 146 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHH
Confidence 23455566666666666666555544443332222344445555544444444444444444433333333333344444
Q ss_pred hhhh
Q 012393 296 NKQS 299 (464)
Q Consensus 296 eELs 299 (464)
.|++
T Consensus 147 ~~~~ 150 (155)
T 2efr_A 147 NEVA 150 (155)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 6
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=97.07 E-value=0.022 Score=51.92 Aligned_cols=81 Identities=30% Similarity=0.304 Sum_probs=70.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHHHhhhh
Q 012393 132 TMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLK 211 (464)
Q Consensus 132 sL~eKV~sLEeQLkese~Ql~~akas~Ea~~~~isdmEnvIedLK~kVskAESRAe~AEskc~lLteTN~ELneEL~~Lk 211 (464)
....|+..||+.|+-.+-.+.+..++.+...++...++.-|..|..++-.||.||+-|+..+..|-.+...|-++|..-+
T Consensus 39 ~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~K 118 (155)
T 2efr_A 39 LSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQK 118 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44558889999999888888888888888888889999999999999999999999999999999998888888877554
Q ss_pred c
Q 012393 212 G 212 (464)
Q Consensus 212 s 212 (464)
.
T Consensus 119 e 119 (155)
T 2efr_A 119 L 119 (155)
T ss_dssp H
T ss_pred H
Confidence 4
No 7
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=96.58 E-value=0.018 Score=51.77 Aligned_cols=141 Identities=23% Similarity=0.258 Sum_probs=95.4
Q ss_pred hhhhhHHhhhccccccchhHHHHHHHhHHHHHhhhhHHHHHhhhcCchhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhh
Q 012393 81 LGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQT 160 (464)
Q Consensus 81 ~gkLq~~Qf~L~as~~REseLksKLk~s~EQLe~k~~~Lekl~~s~~SE~~sL~eKV~sLEeQLkese~Ql~~akas~Ea 160 (464)
..|++.++-+|.-+.-|=.....||..+.......+....-|+.. ...--+|+..||.||++.......|.-..+.
T Consensus 2 ~Rri~llEeeLer~eerl~~a~~kLeeaek~adE~eR~~k~lE~r----~~~deEr~~~lE~qLkeak~~aeeadrKyeE 77 (147)
T 2b9c_A 2 NRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESR----AQKDEEKMEIQEIQLKEAKHIAEDADRKYEE 77 (147)
T ss_dssp ---------CCGGGGTTTTHHHHHHHHHHHHHHHHTHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hcccHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 457888888888888887777888887777666666555555543 2245678999999999888777766655444
Q ss_pred hHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHH
Q 012393 161 SQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLE 232 (464)
Q Consensus 161 ~~~~isdmEnvIedLK~kVskAESRAe~AEskc~lLteTN~ELneEL~~Lks~~s~~~ek~~~LE~qLkese 232 (464)
..-++ .-+-..+.+||.|++.|+++|..|-+.--.+..-|..|.-+....+.|-...|.+|+.+.
T Consensus 78 ~~RKl-------~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~eekas~rE~~yee~I~~L~ 142 (147)
T 2b9c_A 78 VARKL-------VIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKVEELLSKNYHLENEVARLK 142 (147)
T ss_dssp HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTSC
T ss_pred HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHH
Confidence 33343 334455669999999999999998888777777777777776555777777777777653
No 8
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.42 E-value=1.8 Score=54.43 Aligned_cols=28 Identities=11% Similarity=0.226 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 012393 334 MEMVMQLATQRELIQKQVYSLTSENKLL 361 (464)
Q Consensus 334 ~dLV~qLa~ERErL~~Qissl~~eNkiL 361 (464)
+.|+..|+.|+.|=..++..+...-.-|
T Consensus 2076 ~~Li~gL~~Ek~RW~~~~~~l~~~~~~L 2103 (3245)
T 3vkg_A 2076 IALLDNLNSERGRWEQQSENFNTQMSTV 2103 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhccccHHHHHHHHHHHHHhc
Confidence 4688888888888888877776654444
No 9
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.08 E-value=0.57 Score=44.22 Aligned_cols=92 Identities=8% Similarity=0.138 Sum_probs=54.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHH---HHHHHh
Q 012393 132 TMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLE---LSEEIN 208 (464)
Q Consensus 132 sL~eKV~sLEeQLkese~Ql~~akas~Ea~~~~isdmEnvIedLK~kVskAESRAe~AEskc~lLteTN~E---LneEL~ 208 (464)
.|...|..|+..+.....++..+....+....++...++-|.+++.++.+.+.+..++ .+|-+ |..|+.
T Consensus 29 ~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v--------~~~kE~~aL~kEie 100 (256)
T 3na7_A 29 EKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEI--------KSERELRSLNIEED 100 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------SSSSHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--------CCHHHHHHHHHHHH
Confidence 3456666666666666666666666655555566666666666666666655554321 24443 445677
Q ss_pred hhhcCCCCcchhhhhhHHHHhhHHHHHHHh
Q 012393 209 FLKGNNDSNTKKVGILENQLRDLEIQLQQA 238 (464)
Q Consensus 209 ~Lks~~s~~~ek~~~LE~qLkese~QLqhA 238 (464)
+++. +...||..+.+...+++..
T Consensus 101 ~~~~-------~i~~lE~eile~~e~ie~~ 123 (256)
T 3na7_A 101 IAKE-------RSNQANREIENLQNEIKRK 123 (256)
T ss_dssp HHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 6665 3677777777655554443
No 10
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=94.97 E-value=1 Score=41.67 Aligned_cols=127 Identities=14% Similarity=0.205 Sum_probs=80.6
Q ss_pred CCcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhh
Q 012393 215 DSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFEL 294 (464)
Q Consensus 215 s~~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~mL~stikDME~vIeDLksKv~kaE~rae~~E~kc~~LsEtN~eL 294 (464)
+..++|+..||+||.+.+..|..=.-++.-.+-+|..+--++...|..+-||+.++..+++.-+.++..|+.|-- .|
T Consensus 2 ~~~neKi~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa---~L 78 (168)
T 3o0z_A 2 SLANEKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQA---IL 78 (168)
T ss_dssp --------CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Confidence 335799999999999999888766655555566788888899999999999999999998887777777766542 23
Q ss_pred hhhh----------hhhhhHHHHHHHhhHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 012393 295 KNKQ----------SFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLV 362 (464)
Q Consensus 295 neEL----------sflrskl~~LE~sL~~A~~~K~~TakdI~~~tK~i~dLV~qLa~ERErL~~Qissl~~eNkiL~ 362 (464)
.+|= +-|.+|+..|+.-+.+ +..--++...|+..|+..|+.|=++..-+-
T Consensus 79 ~qEr~~r~q~se~~~elq~ri~~L~~El~~------------------~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 79 EAERRDRGHDSEMIGDLQARITSLQEEVKH------------------LKHNLEKVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3332 2233333333332222 223345566677777888887777665554
No 11
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=93.81 E-value=2.2 Score=40.26 Aligned_cols=109 Identities=12% Similarity=0.169 Sum_probs=46.8
Q ss_pred hhhHHhhhccccccchhHHHHHHHhHHHHHhhhhHHHHHhhhc---CchhhhhHHHHHHHHHHHHHHHHHHHhhhhhchh
Q 012393 83 RFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLEST---KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQ 159 (464)
Q Consensus 83 kLq~~Qf~L~as~~REseLksKLk~s~EQLe~k~~~Lekl~~s---~~SE~~sL~eKV~sLEeQLkese~Ql~~akas~E 159 (464)
.||.+-..+.....+=.++...+.....++......+..+... -+.+...+..-+..+...++.+..++.+++
T Consensus 12 ~LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~---- 87 (256)
T 3na7_A 12 EISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIK---- 87 (256)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS----
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC----
Confidence 3455555555444444444444444444444433333333221 012222333333333333444444443332
Q ss_pred hhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhh
Q 012393 160 TSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQL 196 (464)
Q Consensus 160 a~~~~isdmEnvIedLK~kVskAESRAe~AEskc~lL 196 (464)
...++.+|..-|+.++..+..+|.+......+..-+
T Consensus 88 -~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~ 123 (256)
T 3na7_A 88 -SERELRSLNIEEDIAKERSNQANREIENLQNEIKRK 123 (256)
T ss_dssp -SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112444555555555555555555555444444433
No 12
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=93.29 E-value=0.29 Score=43.90 Aligned_cols=128 Identities=20% Similarity=0.287 Sum_probs=75.6
Q ss_pred HhhhhhhhhHHHHHHhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhH
Q 012393 180 YGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDM 259 (464)
Q Consensus 180 skAESRAe~AEskc~lLteTN~ELneEL~~Lks~~s~~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~mL~stikDM 259 (464)
.+|+.|...|-.|+.-.+.+-.+-..-...|-+++....+|+..||.+|++. +..++-.-- .| ...
T Consensus 13 er~eerl~~a~~kLeeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkea-------k~~aeeadr----Ky---eE~ 78 (147)
T 2b9c_A 13 DRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEA-------KHIAEDADR----KY---EEV 78 (147)
T ss_dssp GGGGTTTTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH----HH---HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHH-------HHHHHHHHH----hH---HHH
Confidence 3444444444444444444444433344444443222346777777777764 333322211 12 222
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHhhHHHHHH
Q 012393 260 ETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNH 328 (464)
Q Consensus 260 E~vIeDLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrskl~~LE~sL~~A~~~K~~TakdI~~ 328 (464)
..=+.-+-..+..++.|++.++.+|. +|-++|......+.|||.+=..+...-...-..|..
T Consensus 79 ~RKl~~~E~dLeraeeRae~aE~k~~-------eLEeeL~~~~~nlKsLE~~eekas~rE~~yee~I~~ 140 (147)
T 2b9c_A 79 ARKLVIIESDLERAEERAELSEGKCA-------ELEEELKTVTNNLKSLEDKVEELLSKNYHLENEVAR 140 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHH
Confidence 22333445566688888888888887 788889999999999999988888766666555543
No 13
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=92.76 E-value=3.3 Score=38.31 Aligned_cols=21 Identities=33% Similarity=0.468 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 012393 133 MKEKVKSLEEQLKESEIRLQN 153 (464)
Q Consensus 133 L~eKV~sLEeQLkese~Ql~~ 153 (464)
..+|+..||+||.+.+..+..
T Consensus 4 ~neKi~~LekQL~E~n~kLk~ 24 (168)
T 3o0z_A 4 ANEKLSQLQKQLEEANDLLRT 24 (168)
T ss_dssp ------CTHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999887653
No 14
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=91.83 E-value=7.9 Score=36.29 Aligned_cols=145 Identities=19% Similarity=0.154 Sum_probs=94.9
Q ss_pred hhHHHHHhHHHHHHHHHHHHHhhcchHHHHhhhhHHHhhhhhHHhhhccccccchhHHHHHHHhHHHHHhhhhHHHHHhh
Q 012393 44 HTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLE 123 (464)
Q Consensus 44 ~~eqE~~~lEEaa~~~~eR~~EAENasEvL~G~Skel~gkLq~~Qf~L~as~~REseLksKLk~s~EQLe~k~~~Lekl~ 123 (464)
+.+++..+.=+.+..+..++.+++.-..=|+.-|++|=. .++-+|.++..|.++|++++....
T Consensus 7 s~~ee~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~---ELE~eL~~~Ek~~~~L~~~~~~L~-------------- 69 (189)
T 2v71_A 7 SLKEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEA---ELEAQLVQAEQRNRDLQADNQRLK-------------- 69 (189)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH--------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH--------------
Confidence 455666666677777778888888888888888888754 345677778888888887775554
Q ss_pred hcCchhhhhHHHHHHHHHHH----HHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhh
Q 012393 124 STKNSEVLTMKEKVKSLEEQ----LKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDT 199 (464)
Q Consensus 124 ~s~~SE~~sL~eKV~sLEeQ----Lkese~Ql~~akas~Ea~~~~isdmEnvIedLK~kVskAESRAe~AEskc~lLteT 199 (464)
.|+.++.+|....-.+ +...+-++.......+.....+.++|-.+.||-.+.-.+.+-.+--++|.-..-+.
T Consensus 70 ----~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr 145 (189)
T 2v71_A 70 ----YEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIER 145 (189)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3444455554444332 33333334444445555666778888888888877777777777777776666666
Q ss_pred hHHHHHHHhh
Q 012393 200 NLELSEEINF 209 (464)
Q Consensus 200 N~ELneEL~~ 209 (464)
|+=|..||..
T Consensus 146 ~alLE~El~E 155 (189)
T 2v71_A 146 NAFLESELDE 155 (189)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666553
No 15
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=91.09 E-value=1.9 Score=36.15 Aligned_cols=53 Identities=9% Similarity=0.273 Sum_probs=38.5
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHH
Q 012393 127 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESL 179 (464)
Q Consensus 127 ~SE~~sL~eKV~sLEeQLkese~Ql~~akas~Ea~~~~isdmEnvIedLK~kV 179 (464)
..|+.+|+.|++.+|..|-.++.++..+....+.......+.|.-+..|..+|
T Consensus 43 E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rri 95 (101)
T 3u1c_A 43 EDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRI 95 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888999999999999998888888777666655555555555555554444
No 16
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=90.00 E-value=6.9 Score=33.75 Aligned_cols=48 Identities=21% Similarity=0.336 Sum_probs=28.1
Q ss_pred hHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhhhhhhhhhhHHHHHHHhh
Q 012393 258 DMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSL 312 (464)
Q Consensus 258 DME~vIeDLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrskl~~LE~sL 312 (464)
+|+..|.|+.+.+. ..++.+.-|+..--+|-.+++-|+..++++|..+
T Consensus 80 eLe~~l~el~~rle-------eeee~~~~L~~~kkkle~e~~~Lk~~led~e~~l 127 (129)
T 2fxo_A 80 QLEAKVKEMNKRLE-------DEEEMNAELTAKKRKLEDECSELKRDIDDLELTL 127 (129)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444555444443 3344466666666677677777777777766554
No 17
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=89.51 E-value=14 Score=34.67 Aligned_cols=75 Identities=23% Similarity=0.223 Sum_probs=44.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHHH
Q 012393 128 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEI 207 (464)
Q Consensus 128 SE~~sL~eKV~sLEeQLkese~Ql~~akas~Ea~~~~isdmEnvIedLK~kVskAESRAe~AEskc~lLteTN~ELneEL 207 (464)
|.|.+..+.+.-.-.....+..++..+.+..+.+++.=..+|.-.+ .. .+.++.++..|...|..|..|+
T Consensus 3 ~~f~s~~ee~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE---~e-------L~~~Ek~~~~L~~~~~~L~~E~ 72 (189)
T 2v71_A 3 MDFSSLKEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELE---AQ-------LVQAEQRNRDLQADNQRLKYEV 72 (189)
T ss_dssp -CCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666666666777777777777777777665444443222 22 3344555555666666666666
Q ss_pred hhhhc
Q 012393 208 NFLKG 212 (464)
Q Consensus 208 ~~Lks 212 (464)
..+|.
T Consensus 73 e~~k~ 77 (189)
T 2v71_A 73 EALKE 77 (189)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66665
No 18
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=89.08 E-value=2.1 Score=48.51 Aligned_cols=83 Identities=12% Similarity=0.173 Sum_probs=24.7
Q ss_pred hhhhHHHhhhhhHHhhhccccccchhHHHHHHHhHHHHHhhhh----HHHHHhhhcCchhhhhHHHHHHHHHHHHHHHHH
Q 012393 74 MGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKD----MVLQKLESTKNSEVLTMKEKVKSLEEQLKESEI 149 (464)
Q Consensus 74 ~G~Skel~gkLq~~Qf~L~as~~REseLksKLk~s~EQLe~k~----~~Lekl~~s~~SE~~sL~eKV~sLEeQLkese~ 149 (464)
......|..++..+|-.|.....+=.+|..++....+.+...- ..++.++.. ..|...+..+|.+|++++.+.+.
T Consensus 920 ~~~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~-~~e~~~~~~~v~~L~~e~~~l~~ 998 (1080)
T 2dfs_A 920 KKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMS-EEEAKNATNRVLSLQEEIAKLRK 998 (1080)
T ss_dssp -------------------------------CHHHHHHHHHHHHHHHHTHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555556666665554444444445544433333222211 112222222 45555666667777777666666
Q ss_pred HHhhhhhc
Q 012393 150 RLQNANAC 157 (464)
Q Consensus 150 Ql~~akas 157 (464)
+++.+...
T Consensus 999 ~~~~~~ke 1006 (1080)
T 2dfs_A 999 ELHQTQTE 1006 (1080)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 65554433
No 19
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=88.36 E-value=12 Score=32.34 Aligned_cols=80 Identities=16% Similarity=0.199 Sum_probs=50.4
Q ss_pred hhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHhhHHHHHHHhHHHHHH
Q 012393 257 WDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEM 336 (464)
Q Consensus 257 kDME~vIeDLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrskl~~LE~sL~~A~~~K~~TakdI~~~tK~i~dL 336 (464)
..+..=+.||+..+.-....+..+++.|..|.....+|...|.-+..|+++.|.........|...-.++.-.++-|.|+
T Consensus 44 ~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 44 VSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444456677788888888888777777777777777777766666666555555555555544
No 20
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=87.13 E-value=5.4 Score=45.31 Aligned_cols=35 Identities=11% Similarity=0.296 Sum_probs=18.5
Q ss_pred HHHhhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhh
Q 012393 254 SAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLS 288 (464)
Q Consensus 254 stikDME~vIeDLksKv~kaE~rae~~E~kc~~Ls 288 (464)
..+.+++.-|++|...+.++.++.+.+|+++.-+.
T Consensus 984 ~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~ 1018 (1080)
T 2dfs_A 984 NRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYK 1018 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555554333
No 21
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=83.63 E-value=15 Score=30.67 Aligned_cols=68 Identities=21% Similarity=0.193 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhh
Q 012393 171 FIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEAS 245 (464)
Q Consensus 171 vIedLK~kVskAESRAe~AEskc~lLteTN~ELneEL~~Lks~~s~~~ek~~~LE~qLkese~QLqhA~As~eAs 245 (464)
=+.-||....+|..||+.++.+++.+...+.++-.++..|.- |...||..|-.+..+|..|....+..
T Consensus 10 Km~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~k-------k~~~lE~eld~~ee~L~ea~~kLee~ 77 (101)
T 3u1c_A 10 KMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEK-------QLRVTEDSRDQVLEELHKSEDSLLFA 77 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356678888999999999999999999999999999999976 47888888888888887776554433
No 22
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=83.18 E-value=12 Score=37.95 Aligned_cols=18 Identities=39% Similarity=0.527 Sum_probs=7.3
Q ss_pred hhhhhhhhHHHHHHHhhH
Q 012393 296 NKQSFMRDKIKILESSLN 313 (464)
Q Consensus 296 eELsflrskl~~LE~sL~ 313 (464)
+|+.-++.++..|+.++.
T Consensus 565 ~e~~~~~~~~~~l~~~~~ 582 (597)
T 3oja_B 565 QETSLKRQKVKQLEAKKN 582 (597)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 333333444444444433
No 23
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=82.85 E-value=4.2 Score=34.99 Aligned_cols=82 Identities=20% Similarity=0.214 Sum_probs=47.2
Q ss_pred hhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHhhhhhhhhhhh
Q 012393 199 TNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTE 278 (464)
Q Consensus 199 TN~ELneEL~~Lks~~s~~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~mL~stikDME~vIeDLksKv~kaE~rae 278 (464)
+=..|..||..+++. -.+||++|.+.+.+... .+.|+...|.+|..-+..+.....
T Consensus 44 ~iq~L~~el~~l~~~-------~~~LE~~l~e~e~~~~~-----------------~l~~~q~~i~~lE~eL~~~r~e~~ 99 (129)
T 3tnu_B 44 MIQRLRAEIDNVKKQ-------CANLQNAIADAEQRGEL-----------------ALKDARNKLAELEEALQKAKQDMA 99 (129)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHhHHHHHHHHH
Confidence 334567788888886 56788888875433322 244444444444444444443333
Q ss_pred hhhhhhhhhhccchhhhhhhhhhhhH
Q 012393 279 SVEEQCIVLSEDNFELKNKQSFMRDK 304 (464)
Q Consensus 279 ~~E~kc~~LsEtN~eLneELsflrsk 304 (464)
+-=..+-.|=+.-+-|.-||+-||.=
T Consensus 100 ~ql~EYq~LlnvKl~Ld~EIatYRkL 125 (129)
T 3tnu_B 100 RLLREYQELMNTKLALDVEIATYRKL 125 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 32223445666666777888888753
No 24
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=81.80 E-value=9.9 Score=31.52 Aligned_cols=50 Identities=14% Similarity=0.298 Sum_probs=29.0
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHH
Q 012393 127 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLK 176 (464)
Q Consensus 127 ~SE~~sL~eKV~sLEeQLkese~Ql~~akas~Ea~~~~isdmEnvIedLK 176 (464)
..|+.+|+.|++.||.++-.+..++..+....+.........|.-+..|.
T Consensus 43 E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLn 92 (101)
T 3u59_A 43 EEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLN 92 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777777777777777666555554433333333333333333
No 25
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=81.26 E-value=4.9 Score=32.20 Aligned_cols=61 Identities=26% Similarity=0.284 Sum_probs=41.6
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhH
Q 012393 172 IESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAK 239 (464)
Q Consensus 172 IedLK~kVskAESRAe~AEskc~lLteTN~ELneEL~~Lks~~s~~~ek~~~LE~qLkese~QLqhA~ 239 (464)
+.-||.....|..|++.++.++......+.++..++..|.- |...||..|..++.+|..|.
T Consensus 8 m~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~k-------Kiq~lE~eld~~ee~l~~a~ 68 (81)
T 1ic2_A 8 MQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQK-------KLKGTEDELDKYSESLKDAQ 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 34456666677777777777777777777777777777765 46667776666665555544
No 26
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=80.90 E-value=7.9 Score=32.12 Aligned_cols=63 Identities=27% Similarity=0.243 Sum_probs=52.0
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhh
Q 012393 172 IESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVS 241 (464)
Q Consensus 172 IedLK~kVskAESRAe~AEskc~lLteTN~ELneEL~~Lks~~s~~~ek~~~LE~qLkese~QLqhA~As 241 (464)
+.-||....+|..||+.++.+++.+...+.++.+++..|+- |...||..+..+..+|..|...
T Consensus 11 m~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~k-------Kiq~lE~eld~~~e~l~~a~~k 73 (101)
T 3u59_A 11 MQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQK-------KLKGTEDEVEKYSESVKEAQEK 73 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 56678888999999999999999999999999999999887 4777887777776666665533
No 27
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=78.94 E-value=5.5 Score=34.42 Aligned_cols=90 Identities=14% Similarity=0.211 Sum_probs=48.8
Q ss_pred HHHhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHhhhh
Q 012393 192 KVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVS 271 (464)
Q Consensus 192 kc~lLteTN~ELneEL~~Lks~~s~~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~mL~stikDME~vIeDLksKv~ 271 (464)
.+.-|..+=..|.-||..+++. -.+||++|.+.+.+...+ +.|+...|.+|..-+.
T Consensus 39 Ei~elrr~iq~L~~el~~l~~~-------~~sLE~~l~e~e~~~~~~-----------------l~~~q~~i~~lE~eL~ 94 (131)
T 3tnu_A 39 EISELRRTMQNLEIELQSQLSM-------KASLENSLEETKGRYCMQ-----------------LAQIQEMIGSVEEQLA 94 (131)
T ss_dssp --CHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh-------HHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHH
Confidence 3333333334566678888875 567888888764433322 3444444444444444
Q ss_pred hhhhhhhhhhhhhhhhhccchhhhhhhhhhhhHH
Q 012393 272 KAESKTESVEEQCIVLSEDNFELKNKQSFMRDKI 305 (464)
Q Consensus 272 kaE~rae~~E~kc~~LsEtN~eLneELsflrskl 305 (464)
.+.....+-=..+-.|=+.-+-|.-||+-||.=+
T Consensus 95 ~~r~em~~ql~EYq~Ll~vKl~Ld~EIatYRkLL 128 (131)
T 3tnu_A 95 QLRCEMEQQNQEYKILLDVKTRLEQEIATYRRLL 128 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4433333322234456666667888888888543
No 28
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=78.26 E-value=15 Score=30.49 Aligned_cols=66 Identities=17% Similarity=0.224 Sum_probs=43.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhh-hHHHHHHHHHHHHhhhhhhhhHHHHHHhhhh
Q 012393 130 VLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNE-MDNFIESLKESLYGAESRAESAEEKVTQLTD 198 (464)
Q Consensus 130 ~~sL~eKV~sLEeQLkese~Ql~~akas~Ea~~~~isd-mEnvIedLK~kVskAESRAe~AEskc~lLte 198 (464)
+-+--+||..||.|=+..+.++...... ..+.+.+ .+..|.+|+.+|..+-.--...+.+..-|.+
T Consensus 18 lAsyIdKVR~LEqqN~~Le~~i~~l~~~---~~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~ 84 (93)
T 3s4r_A 18 FANLIDKVRFLEQQNKILLAELEQLKGQ---GKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAE 84 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc---cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466789999999999988887655433 1233444 4888888888888776554444444444333
No 29
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=78.06 E-value=22 Score=37.32 Aligned_cols=103 Identities=11% Similarity=0.181 Sum_probs=65.3
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhH
Q 012393 167 EMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQ 246 (464)
Q Consensus 167 dmEnvIedLK~kVskAESRAe~AEskc~lLteTN~ELneEL~~Lks~~s~~~ek~~~LE~qLkese~QLqhA~As~eAs~ 246 (464)
..+.-|++||..+...+.++..|+.-...|..+-.+....+ ..++..+.++...+++..+.+....
T Consensus 97 ~V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi--------------~en~n~~~~~~~~~e~~~~~i~~~~ 162 (464)
T 1m1j_B 97 TVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQR--------------KDNDIILSEYNTEMELHYNYIKDNL 162 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccc--------------cchhhHHHHHHHHHHHHHHHHHHHH
Confidence 45666888888888888777777777666655544444333 3334455555555555555544333
Q ss_pred HHHHhHHHHHhhHHHHHHHHHhhhhhhhhhhhhhhhhhh
Q 012393 247 EQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCI 285 (464)
Q Consensus 247 eqQ~mL~stikDME~vIeDLksKv~kaE~rae~~E~kc~ 285 (464)
.++ .-+.|..+..+++.|+.|+...+........+|.
T Consensus 163 ~~~--~~~~i~~L~~~~~~l~~ki~~l~~~~~~~~~~~~ 199 (464)
T 1m1j_B 163 DNN--IPSSLRVLRAVIDSLHKKIQKLENAIATQTDYCR 199 (464)
T ss_dssp HTH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hcc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 211 2456788888888888888888877666666664
No 30
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=77.65 E-value=2 Score=37.35 Aligned_cols=75 Identities=21% Similarity=0.267 Sum_probs=48.6
Q ss_pred HhhhhHHHhhhhhHHhhhccccccchhHHHHHHHhHHHHHhhhh--HHHHHhhhcCchhhhhHHHHHHHHHHHHHHHH
Q 012393 73 LMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKD--MVLQKLESTKNSEVLTMKEKVKSLEEQLKESE 148 (464)
Q Consensus 73 L~G~Skel~gkLq~~Qf~L~as~~REseLksKLk~s~EQLe~k~--~~Lekl~~s~~SE~~sL~eKV~sLEeQLkese 148 (464)
|.||-+=+.+-|+.+|-.++.-...=..-+-||++++.+-+.-- .....+.. +.++|.+|++|+..|.+||.+.-
T Consensus 26 ~~~~~~~tM~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~-R~~~Vsalq~KiaeLKrqLAd~v 102 (107)
T 2k48_A 26 FQGIDPFTMSTLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQN-RRAAVSTLETKLGELKRQLADLV 102 (107)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555443333445679999998888533 33333333 47899999999999999888753
No 31
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=76.48 E-value=10 Score=38.38 Aligned_cols=53 Identities=11% Similarity=0.170 Sum_probs=30.8
Q ss_pred hHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHHHhhhhcC
Q 012393 161 SQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGN 213 (464)
Q Consensus 161 ~~~~isdmEnvIedLK~kVskAESRAe~AEskc~lLteTN~ELneEL~~Lks~ 213 (464)
.+..+.......+.++.++.+-|.+.+....+...|...|..++.++..|...
T Consensus 528 ~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~ 580 (597)
T 3oja_B 528 RRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAK 580 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555666666666666666666666666666666665544
No 32
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=71.93 E-value=2.3e+02 Score=36.42 Aligned_cols=78 Identities=12% Similarity=0.134 Sum_probs=41.1
Q ss_pred HHhHHHHHHHHHHHHHhhc---------chHHHHhhhhHHHhhhhhHHhhhccccccchhHHHHHHHhHHHHHhhhhHHH
Q 012393 49 AFRMEEAAEVVWGRFLEAE---------NSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVL 119 (464)
Q Consensus 49 ~~~lEEaa~~~~eR~~EAE---------NasEvL~G~Skel~gkLq~~Qf~L~as~~REseLksKLk~s~EQLe~k~~~L 119 (464)
-.++=.++...+.||+.-. +-.+.+.+=.+-+..| -+...++-..-..=|
T Consensus 1868 ~~~iH~sv~~~s~~~~~~~~R~~yvTP~syLeli~~y~~ll~~K---------------------~~el~~~~~rl~~GL 1926 (3245)
T 3vkg_A 1868 LVYIHQTIGEANIRLLKRQGRQNYVTPRHYLDFINQVVLLINEK---------------------RDQLEEEQLHLNIGL 1926 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCcccCCHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHH
Confidence 3445566777778877643 3455554444444333 333333344445566
Q ss_pred HHhhhcCchhhhhHHHHHHHHHHHHHHHH
Q 012393 120 QKLESTKNSEVLTMKEKVKSLEEQLKESE 148 (464)
Q Consensus 120 ekl~~s~~SE~~sL~eKV~sLEeQLkese 148 (464)
+||.++ ...|-.|+.++..++.+|.+..
T Consensus 1927 ~KL~et-~~~V~~l~~~L~~~~~~L~~k~ 1954 (3245)
T 3vkg_A 1927 KKLRDT-EAQVKDLQVSLAQKNRELDVKN 1954 (3245)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 777776 4455555555555555554443
No 33
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=71.59 E-value=18 Score=28.83 Aligned_cols=69 Identities=20% Similarity=0.245 Sum_probs=28.6
Q ss_pred HHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhH
Q 012393 164 QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAK 239 (464)
Q Consensus 164 ~isdmEnvIedLK~kVskAESRAe~AEskc~lLteTN~ELneEL~~Lks~~s~~~ek~~~LE~qLkese~QLqhA~ 239 (464)
+|..|.+-.+...+++..|+.....++.++..+.+.-..|+..+..|.+. +...+.+|......|+.|.
T Consensus 7 Km~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~e-------ld~~ee~l~~a~~kLeeae 75 (81)
T 1ic2_A 7 KMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDE-------LDKYSESLKDAQEKLELAD 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333444333332 3344445555555555544
No 34
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=70.32 E-value=11 Score=30.58 Aligned_cols=79 Identities=15% Similarity=0.176 Sum_probs=39.3
Q ss_pred HHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHhhhhhhhhhhhhhhhhh
Q 012393 205 EEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQC 284 (464)
Q Consensus 205 eEL~~Lks~~s~~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~mL~stikDME~vIeDLksKv~kaE~rae~~E~kc 284 (464)
.|+..|+++ ..+||++|.+.+.+... .+.++...|.+|...+........+--...
T Consensus 3 ~eie~L~~q-------~~~Le~~l~e~E~~~~~-----------------~l~~~q~~i~~lE~el~~~r~e~~~ql~EY 58 (86)
T 1x8y_A 3 CQLSQLQCQ-------LAAKEAKLRDLEDSLAR-----------------ERDTSRRLLAEKEREMAEMRARMQQQLDEY 58 (86)
T ss_dssp ----------------CTTHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHH-------HHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788887 45789999887654432 233333444444444443333333322234
Q ss_pred hhhhccchhhhhhhhhhhhHHHH
Q 012393 285 IVLSEDNFELKNKQSFMRDKIKI 307 (464)
Q Consensus 285 ~~LsEtN~eLneELsflrskl~~ 307 (464)
-.|=..-+.|.-|++-||.=++.
T Consensus 59 q~LlnvK~~Le~EIatYRkLLEG 81 (86)
T 1x8y_A 59 QELLDIKLALDMEIHAYRKLLEG 81 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHcC
Confidence 45666667788899999876553
No 35
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=68.95 E-value=22 Score=28.96 Aligned_cols=27 Identities=33% Similarity=0.444 Sum_probs=19.4
Q ss_pred hhhHHHHHHhhhhhhHHHHHHHhhhhc
Q 012393 186 AESAEEKVTQLTDTNLELSEEINFLKG 212 (464)
Q Consensus 186 Ae~AEskc~lLteTN~ELneEL~~Lks 212 (464)
...|+.+|..|.....+|...|..|..
T Consensus 58 l~eaEe~~~~L~~~K~eLE~~l~el~~ 84 (89)
T 3bas_A 58 MKQLEDKVEELLSKNYHLENEVARLKK 84 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777787777777777766654
No 36
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=68.71 E-value=14 Score=36.74 Aligned_cols=73 Identities=25% Similarity=0.300 Sum_probs=52.8
Q ss_pred hHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHHHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhh
Q 012393 168 MDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSE 243 (464)
Q Consensus 168 mEnvIedLK~kVskAESRAe~AEskc~lLteTN~ELneEL~~Lks~~s~~~ek~~~LE~qLkese~QLqhA~As~e 243 (464)
-.|+..-|-.++.+++-.-.+++.+..--..|=+-|.+-|..-++++. .|+.-||+++++.+.+|+.+.|.++
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (471)
T 3mq9_A 395 ARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQ---KKVEELEGEITTLNHKLQDASAEVE 467 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666666666666666655556677778777777777743 6899999999999999999888765
No 37
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=68.21 E-value=16 Score=31.77 Aligned_cols=104 Identities=28% Similarity=0.351 Sum_probs=47.3
Q ss_pred cccccchhH-HHHHHHhHHHHHhhhhHHHHHhhhcCchhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhh--
Q 012393 92 NGSLQRESE-LKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEM-- 168 (464)
Q Consensus 92 ~as~~REse-LksKLk~s~EQLe~k~~~Lekl~~s~~SE~~sL~eKV~sLEeQLkese~Ql~~akas~Ea~~~~isdm-- 168 (464)
+|+..-+.| +..-|+.-++.|.+ .++.+.....+.+..|...|..||-+|.+..-+.+.|....+....++.++
T Consensus 6 ~~~~~d~rD~~Ie~Lkreie~lk~---ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~ 82 (120)
T 3i00_A 6 NGVNKDEKDHLIERLYREISGLKA---QLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRR 82 (120)
T ss_dssp ----CCTHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344434444 55666666666653 444444333588889999999999999999888787777766554444433
Q ss_pred -HHHHHHHHHHHHhhhhhhhhHHHHHHhhhh
Q 012393 169 -DNFIESLKESLYGAESRAESAEEKVTQLTD 198 (464)
Q Consensus 169 -EnvIedLK~kVskAESRAe~AEskc~lLte 198 (464)
-..-+.+..++-.||-||..+|.+..-|-+
T Consensus 83 ~~~~~~~~q~~~~e~E~kAqa~Eerf~KLKe 113 (120)
T 3i00_A 83 QREDTEKAQRSLSEIERKAQANEQRYSKLKE 113 (120)
T ss_dssp TCC----------------------------
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445567788999999999888765533
No 38
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=67.24 E-value=7.4 Score=32.11 Aligned_cols=67 Identities=19% Similarity=0.257 Sum_probs=47.4
Q ss_pred hhhhHHHhhhhhHHhhhccccccchhHHHHHHHhHHHHHhhhh--HHHHHhhhcCchhhhhHHHHHHHHHHHHHHHH
Q 012393 74 MGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKD--MVLQKLESTKNSEVLTMKEKVKSLEEQLKESE 148 (464)
Q Consensus 74 ~G~Skel~gkLq~~Qf~L~as~~REseLksKLk~s~EQLe~k~--~~Lekl~~s~~SE~~sL~eKV~sLEeQLkese 148 (464)
||..++++.-+...+..|.-+ +-||++++.+-+.-- .....+.. +.++|..|.+|+..|.+||.+.-
T Consensus 4 M~~l~eLq~e~~~~E~QL~~A-------~QKLkdA~~~~e~DPDevNK~~~~~-R~~~V~~lq~Ki~elkrqlAd~v 72 (78)
T 2ic6_A 4 MSTLKEVQDNITLHEQRLVTT-------RQKLKDAERAVELDPDDVNKSTLQS-RRAAVSALETKLGELKRELADLI 72 (78)
T ss_dssp -CHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhcCCCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777777655 458999998887533 22233333 47899999999999999887653
No 39
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=63.69 E-value=17 Score=29.38 Aligned_cols=78 Identities=18% Similarity=0.222 Sum_probs=44.8
Q ss_pred HHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHhhhhhhhhhhhhhhhhhh
Q 012393 206 EINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCI 285 (464)
Q Consensus 206 EL~~Lks~~s~~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~mL~stikDME~vIeDLksKv~kaE~rae~~E~kc~ 285 (464)
||..|+++ -.+||++|.+.+.+...+ +.|+...|.+|.+-+..+.....+--...-
T Consensus 2 el~~l~~~-------~~sLE~~l~e~e~~~~~~-----------------~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq 57 (84)
T 1gk4_A 2 EVDALKGT-------NESLERQMREMEENFAVE-----------------AANYQDTIGRLQDEIQNMKEEMARHLREYQ 57 (84)
T ss_dssp HHHHHHHH-------HHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHH-------HHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666765 567888888765444332 344444444444444444433333323344
Q ss_pred hhhccchhhhhhhhhhhhHHHH
Q 012393 286 VLSEDNFELKNKQSFMRDKIKI 307 (464)
Q Consensus 286 ~LsEtN~eLneELsflrskl~~ 307 (464)
.|=..-+.|.-|++-||.=++.
T Consensus 58 ~LlnvK~~Ld~EIatYRkLLEG 79 (84)
T 1gk4_A 58 DLLNVKMALDIEIATYRKLLEG 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhHHHHHHHHHHHcC
Confidence 5666677788899999876553
No 40
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=63.19 E-value=20 Score=29.64 Aligned_cols=60 Identities=22% Similarity=0.273 Sum_probs=51.1
Q ss_pred HHHHhhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhhhhhhhhhhHHHHHHHhh
Q 012393 253 YSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSL 312 (464)
Q Consensus 253 ~stikDME~vIeDLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrskl~~LE~sL 312 (464)
..||.-|.--|++||.|-......++.+...-..|...|-.|.+|.+...+|+..|=++.
T Consensus 19 vdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~ 78 (81)
T 2jee_A 19 IDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRM 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 567777888899999999888888888888888899999999999999999988775543
No 41
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=59.88 E-value=53 Score=26.74 Aligned_cols=74 Identities=27% Similarity=0.359 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhchhhh----HHHHh---hhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHH
Q 012393 132 TMKEKVKSLEEQLKESEIRLQNANACFQTS----QEQLN---EMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELS 204 (464)
Q Consensus 132 sL~eKV~sLEeQLkese~Ql~~akas~Ea~----~~~is---dmEnvIedLK~kVskAESRAe~AEskc~lLteTN~ELn 204 (464)
.|+.++..+--.=.....++.++...++.+ +.+++ ++|+-|.-||..|..|-----.-|.+.. -|.
T Consensus 4 eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kve-------sL~ 76 (86)
T 3swk_A 4 ELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVE-------SLQ 76 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH-------HHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-------HHH
Confidence 344444444433344444444444444332 22222 5566666666665554332222233322 266
Q ss_pred HHHhhhhc
Q 012393 205 EEINFLKG 212 (464)
Q Consensus 205 eEL~~Lks 212 (464)
+||.|||-
T Consensus 77 eEl~fLkk 84 (86)
T 3swk_A 77 EEIAFLKK 84 (86)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhh
Confidence 78888874
No 42
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=58.75 E-value=12 Score=31.96 Aligned_cols=68 Identities=19% Similarity=0.250 Sum_probs=49.5
Q ss_pred hhhhHHHhhhhhHHhhhccccccchhHHHHHHHhHHHHHhhhh--HHHHHhhhcCchhhhhHHHHHHHHHHHHHHHHH
Q 012393 74 MGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKD--MVLQKLESTKNSEVLTMKEKVKSLEEQLKESEI 149 (464)
Q Consensus 74 ~G~Skel~gkLq~~Qf~L~as~~REseLksKLk~s~EQLe~k~--~~Lekl~~s~~SE~~sL~eKV~sLEeQLkese~ 149 (464)
||..++++.-+...+..|.-+ +-||++++.+-+.-- .....+.. +.++|.+|.+|+..|.++|.+.-.
T Consensus 4 M~~i~eLq~e~~~~E~QL~~A-------~QKLkdA~~~~e~DPDevNk~~~~~-R~~~V~~lq~Ki~elkr~lAd~v~ 73 (96)
T 2ic9_A 4 MSTLKEVQDNITLHEQRLVTT-------RQKLKDAERAVELDPDDVNKSTLQS-RRAAVSALETKLGELKRELADLIA 73 (96)
T ss_dssp CCTHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhcCCCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 667777777777777777655 458999998887533 23333333 478999999999999999887654
No 43
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=53.81 E-value=29 Score=28.69 Aligned_cols=53 Identities=21% Similarity=0.214 Sum_probs=45.3
Q ss_pred hHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHHHhhhhcC
Q 012393 161 SQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGN 213 (464)
Q Consensus 161 ~~~~isdmEnvIedLK~kVskAESRAe~AEskc~lLteTN~ELneEL~~Lks~ 213 (464)
....|.-+.--|++||++-......++.+.+.-..|...|.+|+.|.+..+++
T Consensus 18 avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~R 70 (81)
T 2jee_A 18 AIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQER 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 44566777778999999999988889999999999999999999998887774
No 44
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=53.33 E-value=52 Score=26.63 Aligned_cols=33 Identities=9% Similarity=0.207 Sum_probs=22.2
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHhhhhhchh
Q 012393 127 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQ 159 (464)
Q Consensus 127 ~SE~~sL~eKV~sLEeQLkese~Ql~~akas~E 159 (464)
.++.+.|.++|..||.+|.++...-.+.++...
T Consensus 13 E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk 45 (72)
T 3cve_A 13 EIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLK 45 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667888888888888777765555555443
No 45
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=51.62 E-value=59 Score=27.00 Aligned_cols=54 Identities=22% Similarity=0.262 Sum_probs=34.7
Q ss_pred hhhhhhhhhhhHHHHHHHhhHHHHHHHHhhHHHHHHHhHHHHHHHHHH---HHHHHHHHHHHHH
Q 012393 293 ELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQL---ATQRELIQKQVYS 353 (464)
Q Consensus 293 eLneELsflrskl~~LE~sL~~A~~~K~~TakdI~~~tK~i~dLV~qL---a~ERErL~~Qiss 353 (464)
.|-+|+.-||-||+.+|+--.+-+-.=-+|-.+|. -|-.|| -.|.+|||.|+++
T Consensus 23 ~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~-------~Lq~qLe~kd~ei~rL~~~l~~ 79 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENERNQYEWKLKATKAEVA-------QLQEQVALKDAEIERLHSQLSR 79 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-------HHHHHHHhhHHHHHHHHHHHhh
Confidence 47888999999999888765554433333333333 333333 3588999999875
No 46
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=50.23 E-value=1.3e+02 Score=26.12 Aligned_cols=95 Identities=21% Similarity=0.240 Sum_probs=53.0
Q ss_pred cchhHHHHHHHhHHHHHhhhhHHHHHhhhcCchhhhhHHHHHHHHHHH----HHHHHHHHhhhhhchhhhHHHHhhhHHH
Q 012393 96 QRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQ----LKESEIRLQNANACFQTSQEQLNEMDNF 171 (464)
Q Consensus 96 ~REseLksKLk~s~EQLe~k~~~Lekl~~s~~SE~~sL~eKV~sLEeQ----Lkese~Ql~~akas~Ea~~~~isdmEnv 171 (464)
+|+.+|++|..... .|+-++.+|....-.. ....+-.+.......+..+..++++|--
T Consensus 3 k~~rdL~~~~~~L~------------------~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~ 64 (111)
T 2v66_B 3 QRNRDLQADNQRLK------------------YEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQA 64 (111)
T ss_dssp HHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46667777664443 3444444454443321 2222233444555555567788888888
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHHHh
Q 012393 172 IESLKESLYGAESRAESAEEKVTQLTDTNLELSEEIN 208 (464)
Q Consensus 172 IedLK~kVskAESRAe~AEskc~lLteTN~ELneEL~ 208 (464)
+.||-..--.+-+-.+--|+|.-.--|-|+=|-.||.
T Consensus 65 NDDLER~~R~t~~SLeD~E~k~n~aiErnalLE~El~ 101 (111)
T 2v66_B 65 NDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELD 101 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888776655555555555555555555555555554
No 47
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=49.60 E-value=58 Score=24.05 Aligned_cols=50 Identities=18% Similarity=0.156 Sum_probs=33.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHH
Q 012393 130 VLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESL 179 (464)
Q Consensus 130 ~~sL~eKV~sLEeQLkese~Ql~~akas~Ea~~~~isdmEnvIedLK~kV 179 (464)
...+..++...+.........+..++.+.....+.++.+-.-|..+|.+|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi 56 (60)
T 3htk_A 7 KKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQN 56 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667777667777777777777776666666666666666666654
No 48
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=49.43 E-value=42 Score=29.61 Aligned_cols=47 Identities=26% Similarity=0.323 Sum_probs=28.6
Q ss_pred HHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHHHhhh
Q 012393 164 QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFL 210 (464)
Q Consensus 164 ~isdmEnvIedLK~kVskAESRAe~AEskc~lLteTN~ELneEL~~L 210 (464)
++.+++.-|.+||..+..+.-+.+.+..+..-|-+-|.+|.+++.-|
T Consensus 83 ~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 83 DIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344556777777777777777777666665555555555444433
No 49
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=49.10 E-value=1.5e+02 Score=29.30 Aligned_cols=112 Identities=17% Similarity=0.184 Sum_probs=59.6
Q ss_pred HHHHHHHHHhhhhhhHHHhHHHHhhhHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHhhcchHHHHhhhhHHHhhhhhHHh
Q 012393 9 HILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQ 88 (464)
Q Consensus 9 ~iLrmLEkSlA~e~dLEkkL~es~~~eeeLk~kL~~~eqE~~~lEEaa~~~~eR~~EAENasEvL~G~Skel~gkLq~~Q 88 (464)
.+-.++++-+.-..|.+..|.++.....++=. . +.+-.|+.|...+|+--+.+++..|.
T Consensus 356 ~~~~~~~~vl~G~~t~eeal~~~~~~i~~~l~-----------------~-~~~~~e~~~~~~~~~~~~~~~~~~~~--- 414 (471)
T 3mq9_A 356 AVRTAVINAASGRQTVDEALKDAQTRITAARD-----------------G-LRAVMEARNVTHLLQQELTEAQKGFQ--- 414 (471)
T ss_dssp HHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHH-----------------H-HHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH-----------------h-hHHHHHhhhHHHHHHHHHHHHhhhHH---
Confidence 44555666666666666666554432222111 1 12333555666655555444444443
Q ss_pred hhccccccchhHHHHHHHhHHHHHhhhhHHHHHhhhcCchhhhhHHHHHHHHHHHHHHHHHHHhhhhhchh
Q 012393 89 FNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQ 159 (464)
Q Consensus 89 f~L~as~~REseLksKLk~s~EQLe~k~~~Lekl~~s~~SE~~sL~eKV~sLEeQLkese~Ql~~akas~E 159 (464)
+.+.|-..-+...=.|..|-+.++..-..||+.||.++.+.+-+++++.|..+
T Consensus 415 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (471)
T 3mq9_A 415 ------------------DVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVE 467 (471)
T ss_dssp ------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------HHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334333332222333322333333446899999999999999988888743
No 50
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=48.49 E-value=1e+02 Score=26.72 Aligned_cols=73 Identities=15% Similarity=0.168 Sum_probs=40.2
Q ss_pred hhccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHh
Q 012393 287 LSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQ 366 (464)
Q Consensus 287 LsEtN~eLneELsflrskl~~LE~sL~~A~~~K~~TakdI~~~tK~i~dLV~qLa~ERErL~~Qissl~~eNkiL~~k~k 366 (464)
+.+.+-+=..+++-|..++..=|..|...-.. ..--..-+.+-+.+|+..|+++..++..|-.+|--|+.|+-
T Consensus 36 w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~-------fsq~q~~vq~qL~~Lt~~Re~V~~eL~rLQ~eNd~L~Gk~~ 108 (112)
T 1x79_B 36 IKQSSEDSSHQISALVLRAQASEILLEELQQG-------LSQAKRDVQEQMAVLMQSREQVSEELVRLQKDNDSLQGKHS 108 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHTC----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhh
Confidence 66666666677777777777777666554322 22234556778899999999999999999999999988764
No 51
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=46.33 E-value=52 Score=27.01 Aligned_cols=33 Identities=15% Similarity=0.291 Sum_probs=20.8
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHhhhhhchh
Q 012393 127 NSEVLTMKEKVKSLEEQLKESEIRLQNANACFQ 159 (464)
Q Consensus 127 ~SE~~sL~eKV~sLEeQLkese~Ql~~akas~E 159 (464)
.++.+.|.++|..||.+|.++..+-.++++...
T Consensus 19 E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk 51 (79)
T 3cvf_A 19 ETRNAELEHQLRAMERSLEEARAERERARAEVG 51 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566777777777777777665555555443
No 52
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=44.94 E-value=31 Score=27.52 Aligned_cols=46 Identities=15% Similarity=0.242 Sum_probs=38.9
Q ss_pred HHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 012393 316 NIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLL 361 (464)
Q Consensus 316 ~~~K~~TakdI~~~tK~i~dLV~qLa~ERErL~~Qissl~~eNkiL 361 (464)
-+.|....+|+..+-.-+++...+|..|-+.|..||..|..||+.|
T Consensus 24 ReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 24 RKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4567777888888877788888889999999999999999998864
No 53
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=44.93 E-value=1e+02 Score=27.15 Aligned_cols=30 Identities=10% Similarity=0.187 Sum_probs=16.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhhhc
Q 012393 128 SEVLTMKEKVKSLEEQLKESEIRLQNANAC 157 (464)
Q Consensus 128 SE~~sL~eKV~sLEeQLkese~Ql~~akas 157 (464)
.|.+.+++++..|+.++.+.+..+.+.+-.
T Consensus 68 dEl~k~~~~~~~L~~~l~~~~kE~~~lK~e 97 (138)
T 3hnw_A 68 DDYFKAKKMADSLSLDIENKDKEIYDLKHE 97 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666554444443333
No 54
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=44.87 E-value=1.4e+02 Score=25.29 Aligned_cols=24 Identities=13% Similarity=0.104 Sum_probs=16.4
Q ss_pred HHhHHHHHhhHHHHHHHHHhhhhh
Q 012393 249 QSMLYSAIWDMETLIEDLKSKVSK 272 (464)
Q Consensus 249 Q~mL~stikDME~vIeDLksKv~k 272 (464)
..-+..-+..|...++|++.|+-.
T Consensus 36 ~a~l~leldn~~~~~edfk~KyE~ 59 (119)
T 3ol1_A 36 KARVEVERDNLAEDIMRLREKLQE 59 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHH
Confidence 334555677777788888887764
No 55
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=44.68 E-value=1e+02 Score=25.02 Aligned_cols=48 Identities=17% Similarity=0.212 Sum_probs=28.0
Q ss_pred HHHHHhhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhhhhhhhhhhHHH
Q 012393 252 LYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIK 306 (464)
Q Consensus 252 L~stikDME~vIeDLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsflrskl~ 306 (464)
|-.+...+..=..||...++ .+|+.|..|.....+|...|.-+..|++
T Consensus 40 le~~~~~l~~ek~~L~~ql~-------eaEe~~~~L~~~K~eLE~~l~el~~rl~ 87 (89)
T 3bas_A 40 LEEQNVTLLEQKNDLFGSMK-------QLEDKVEELLSKNYHLENEVARLKKLVG 87 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444445555555555533 3445588888888888666666655543
No 56
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=42.35 E-value=25 Score=26.60 Aligned_cols=36 Identities=25% Similarity=0.355 Sum_probs=26.4
Q ss_pred hhhhhhhhhhhhccchhhhhhhhhhhhHHHHHHHhh
Q 012393 277 TESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSL 312 (464)
Q Consensus 277 ae~~E~kc~~LsEtN~eLneELsflrskl~~LE~sL 312 (464)
.+.+|.+.-.|+..|..|..+++.|+..+..|...|
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445566666777788888888888888877776544
No 57
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=40.34 E-value=31 Score=26.40 Aligned_cols=37 Identities=16% Similarity=0.209 Sum_probs=27.5
Q ss_pred hhhhhhhhhhhhccchhhhhhhhhhhhHHHHHHHhhH
Q 012393 277 TESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLN 313 (464)
Q Consensus 277 ae~~E~kc~~LsEtN~eLneELsflrskl~~LE~sL~ 313 (464)
.+.++.+.-.|...|..|..+++.|+.-+..|..-|.
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566667778899998888888888777766554
No 58
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=38.58 E-value=32 Score=32.41 Aligned_cols=45 Identities=22% Similarity=0.430 Sum_probs=22.3
Q ss_pred HHHHHhhhhHHHHHhhhc----------CchhhhhHHHHHHHHHHHHHHHHHHHh
Q 012393 108 FIEQLKAKDMVLQKLEST----------KNSEVLTMKEKVKSLEEQLKESEIRLQ 152 (464)
Q Consensus 108 s~EQLe~k~~~Lekl~~s----------~~SE~~sL~eKV~sLEeQLkese~Ql~ 152 (464)
..+||+..+...++|..- +++|...|++++.+|+.+.+.++.++.
T Consensus 11 ~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~ 65 (190)
T 4emc_A 11 VKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTS 65 (190)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence 345566555555544331 466777777777777777776666553
No 59
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=38.26 E-value=1e+02 Score=25.44 Aligned_cols=44 Identities=32% Similarity=0.359 Sum_probs=26.5
Q ss_pred chhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhH-HHHHHHHHhhhh
Q 012393 218 TKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDM-ETLIEDLKSKVS 271 (464)
Q Consensus 218 ~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~mL~stikDM-E~vIeDLksKv~ 271 (464)
.+||..||.+=+.++.+++.-.... -+.+++| +.-|.+|+.++.
T Consensus 22 IdKVR~LEqqN~~Le~~i~~l~~~~----------~~~~~~~ye~~i~~Lr~~i~ 66 (93)
T 3s4r_A 22 IDKVRFLEQQNKILLAELEQLKGQG----------KSRLGDLYEEEMRELRRQVD 66 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc----------CCCcHHHHHHHHHHHHHHHH
Confidence 4678888888888877776554321 2234444 555666665554
No 60
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=38.13 E-value=2e+02 Score=25.02 Aligned_cols=51 Identities=24% Similarity=0.261 Sum_probs=28.8
Q ss_pred hHHHHHHHhHHHHHhhhhHHHHHhhhcCchhhhhHHHHHHHHHHHHHHHHHH
Q 012393 99 SELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIR 150 (464)
Q Consensus 99 seLksKLk~s~EQLe~k~~~Lekl~~s~~SE~~sL~eKV~sLEeQLkese~Q 150 (464)
++|+.+|..+++.|..+.....+|... ..-...-.+.|.-|+-|+.-|..-
T Consensus 27 ~~L~~~L~~AEeaL~~Kq~~idelk~e-i~q~~~~lE~I~vLkaQv~IY~~D 77 (110)
T 2v4h_A 27 EDLRQQLQQAEEALVAKQELIDKLKEE-AEQHKIVMETVPVLKAQADIYKAD 77 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777777777776666666553 111122223555666666555443
No 61
>3htk_B Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=37.33 E-value=1.1e+02 Score=23.74 Aligned_cols=65 Identities=12% Similarity=0.218 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhh
Q 012393 134 KEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTD 198 (464)
Q Consensus 134 ~eKV~sLEeQLkese~Ql~~akas~Ea~~~~isdmEnvIedLK~kVskAESRAe~AEskc~lLte 198 (464)
++|++.+|.++.+.-.....+-+.......++.+...=.-...-.+..|.+|..+.+.-|..+.+
T Consensus 3 s~ki~~~e~kI~~~~~~~~~~l~~~~~~~~~l~~~~~el~~~~i~~lE~~N~~~s~~~li~~~~~ 67 (73)
T 3htk_B 3 SQKIKDIDDQIQQLLLKQRHLLSKMASSMKSLKNCQKELISTQILQFEAQNMDVSMNDVIGFFNE 67 (73)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHhHHHHHHHHHHH
Confidence 45777888888877766655555555555666666655666666777788887777777666544
No 62
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=36.49 E-value=2.1e+02 Score=26.16 Aligned_cols=108 Identities=13% Similarity=0.091 Sum_probs=49.4
Q ss_pred hhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhhhhhhhh
Q 012393 222 GILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFM 301 (464)
Q Consensus 222 ~~LE~qLkese~QLqhA~As~eAs~eqQ~mL~stikDME~vIeDLksKv~kaE~rae~~E~kc~~LsEtN~eLneELsfl 301 (464)
+.+|+++.++-...-.+.+.- +.|-.++.-..|..|+.-+...+.+....++-+-.=+..+-.|+.|+..|
T Consensus 38 d~~E~~~~~l~~e~~~~~~~~---------~vs~~~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aL 108 (152)
T 3a7p_A 38 NDKEAHLNELFQDNSGAIGGN---------IVSHDDALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISG 108 (152)
T ss_dssp -------------------CH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhccCCCcc---------cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777776544433222210 23333333345555555555555554444444555556667777777777
Q ss_pred hhHHHHHHHhhHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 012393 302 RDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQ 348 (464)
Q Consensus 302 rskl~~LE~sL~~A~~~K~~TakdI~~~tK~i~dLV~qLa~ERErL~ 348 (464)
.-.++.+|.++.....+. .+++.-++.+-+.|-++++
T Consensus 109 qlq~n~lE~kl~kLq~EN----------~~LV~RWM~rk~qEAe~MN 145 (152)
T 3a7p_A 109 TIENNVLQQKLSDLKKEH----------SQLVARWLKKTEKETEAMN 145 (152)
T ss_dssp HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
Confidence 777777777776665543 2445555555555555544
No 63
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=36.47 E-value=1.6e+02 Score=23.49 Aligned_cols=73 Identities=21% Similarity=0.276 Sum_probs=47.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHHHh
Q 012393 129 EVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEIN 208 (464)
Q Consensus 129 E~~sL~eKV~sLEeQLkese~Ql~~akas~Ea~~~~isdmEnvIedLK~kVskAESRAe~AEskc~lLteTN~ELneEL~ 208 (464)
|..++.....+||.++.+.+.+... .+.++...|..|...+.++......--.....|-..-+.|.-|+.
T Consensus 2 el~~l~~~~~sLE~~l~e~e~~~~~----------~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIa 71 (84)
T 1gk4_A 2 EVDALKGTNESLERQMREMEENFAV----------EAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIA 71 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 6677888888889988888776433 344555556666665555555555555566677777777777766
Q ss_pred hhh
Q 012393 209 FLK 211 (464)
Q Consensus 209 ~Lk 211 (464)
.-|
T Consensus 72 tYR 74 (84)
T 1gk4_A 72 TYR 74 (84)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 64
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=34.93 E-value=2.6e+02 Score=25.37 Aligned_cols=30 Identities=17% Similarity=0.291 Sum_probs=18.8
Q ss_pred hHHHHHhhHHHHHHHHHhhhhhhhhhhhhh
Q 012393 251 MLYSAIWDMETLIEDLKSKVSKAESKTESV 280 (464)
Q Consensus 251 mL~stikDME~vIeDLksKv~kaE~rae~~ 280 (464)
.|...+.|-+.+|+.|+..+.....-.+..
T Consensus 119 ~L~~ql~e~~~~l~~lq~ql~~LK~v~~~m 148 (154)
T 2ocy_A 119 RLTEQLREKDTLLDTLTLQLKNLKKVMHSL 148 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455667777777777777766555444333
No 65
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=34.37 E-value=1.4e+02 Score=24.88 Aligned_cols=63 Identities=17% Similarity=0.240 Sum_probs=52.1
Q ss_pred hhhhhhhhhhHHHHHHHhhHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012393 294 LKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTS 356 (464)
Q Consensus 294 LneELsflrskl~~LE~sL~~A~~~K~~TakdI~~~tK~i~dLV~qLa~ERErL~~Qissl~~ 356 (464)
..+-|..||+.++.+|.-|......--.|..+|-.--+-+-+.-+-||.-...||..|-.+.+
T Consensus 17 fe~rL~~Yr~~IeelE~~L~s~s~~~~~Tpq~L~~~l~~~h~~FiaLAa~l~~lH~~V~~~Ke 79 (93)
T 3t98_B 17 FEVQLQQYRQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKE 79 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345578899999999999988665456678999888888888999999999999999988744
No 66
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=33.89 E-value=1.3e+02 Score=26.54 Aligned_cols=24 Identities=38% Similarity=0.454 Sum_probs=12.9
Q ss_pred hhhhhHHHHhhHHHHHHHhHhhhh
Q 012393 220 KVGILENQLRDLEIQLQQAKVSSE 243 (464)
Q Consensus 220 k~~~LE~qLkese~QLqhA~As~e 243 (464)
++.-|++.|+.++.+|+.|-|.++
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~e 95 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVE 95 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555554443
No 67
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=32.99 E-value=66 Score=26.80 Aligned_cols=77 Identities=10% Similarity=0.063 Sum_probs=38.4
Q ss_pred HHhhhhcCCCCcchhhhhhHHHHhhHHHHHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHhhhhhhhhhhhhhhhhhh
Q 012393 206 EINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCI 285 (464)
Q Consensus 206 EL~~Lks~~s~~~ek~~~LE~qLkese~QLqhA~As~eAs~eqQ~mL~stikDME~vIeDLksKv~kaE~rae~~E~kc~ 285 (464)
.++.|++. -.+||++|++.+.+.... +.++..+|.+|..-+..+......-=..+-
T Consensus 13 ~~~~Lq~~-------~~~LE~~l~e~E~~~~~e-----------------~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq 68 (95)
T 3mov_A 13 LYFQGQKE-------SRACLERIQELEDLLAKE-----------------KDNSRRMLTDKEREMAEIRDQMQQQLNDYE 68 (95)
T ss_dssp -----CCC-------CHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-------HHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556665 568888888865543322 223333333333333333322222222244
Q ss_pred hhhccchhhhhhhhhhhhHHH
Q 012393 286 VLSEDNFELKNKQSFMRDKIK 306 (464)
Q Consensus 286 ~LsEtN~eLneELsflrskl~ 306 (464)
.|-..-+.|.-||+-||.=++
T Consensus 69 ~LlnvKl~Le~EIatYrkLLE 89 (95)
T 3mov_A 69 QLLDVKLALDMEISAYRKLLE 89 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 566666778888888886544
No 68
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=32.57 E-value=51 Score=28.88 Aligned_cols=64 Identities=16% Similarity=0.225 Sum_probs=40.3
Q ss_pred HHHhhhhhHHhhhccccccchhHHHHHHHhHHHHHhhhh--HHHHHhhhcCchhhhhHHHHHHHHHHHHHHHHH
Q 012393 78 KEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKD--MVLQKLESTKNSEVLTMKEKVKSLEEQLKESEI 149 (464)
Q Consensus 78 kel~gkLq~~Qf~L~as~~REseLksKLk~s~EQLe~k~--~~Lekl~~s~~SE~~sL~eKV~sLEeQLkese~ 149 (464)
++++.-+...+..|.-+ +-||++++.+-+.-- .....+.. +.++|.+|.+|+..|.+||.+.-.
T Consensus 25 eeLq~Ei~~~E~QL~~A-------rQKLkdA~~~~e~DPDevNK~tl~~-R~~~Vs~lq~KiaeLKrqLAd~va 90 (113)
T 4fi5_A 25 EELQREINAHEGQLVIA-------RQKVRDAEKQYEKDPDELNKRTLTD-REGVAVSIQAKIDELKRQLADRIA 90 (113)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHhcCCCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555433 558888888777532 22223333 468888999998888888876544
No 69
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=32.00 E-value=97 Score=25.77 Aligned_cols=78 Identities=15% Similarity=0.216 Sum_probs=39.8
Q ss_pred hcCchhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHH
Q 012393 124 STKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLEL 203 (464)
Q Consensus 124 ~s~~SE~~sL~eKV~sLEeQLkese~Ql~~akas~Ea~~~~isdmEnvIedLK~kVskAESRAe~AEskc~lLteTN~EL 203 (464)
+++...+..|..+..+||.++++.+.+... ++..+..+|.+|...+..+......--..+..|-..-..|
T Consensus 8 ~~~~~~~~~Lq~~~~~LE~~l~e~E~~~~~----------e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~L 77 (95)
T 3mov_A 8 SSRENLYFQGQKESRACLERIQELEDLLAK----------EKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLAL 77 (95)
T ss_dssp ----------CCCCHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHhhHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455556666677788888877775432 3344445555555555444444444445566666666677
Q ss_pred HHHHhhhh
Q 012393 204 SEEINFLK 211 (464)
Q Consensus 204 neEL~~Lk 211 (464)
.-|+..-|
T Consensus 78 e~EIatYr 85 (95)
T 3mov_A 78 DMEISAYR 85 (95)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76665443
No 70
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=31.79 E-value=1.1e+02 Score=28.83 Aligned_cols=27 Identities=30% Similarity=0.470 Sum_probs=10.5
Q ss_pred hhhhhhhHHHHHHhhhhhhHHHHHHHh
Q 012393 182 AESRAESAEEKVTQLTDTNLELSEEIN 208 (464)
Q Consensus 182 AESRAe~AEskc~lLteTN~ELneEL~ 208 (464)
+++|.++|..-+.-|+.-|.-|+.+|.
T Consensus 11 ~q~ql~~ad~LV~~L~~En~~L~~ql~ 37 (190)
T 4emc_A 11 VKQQIDSADLLVANLVNENFVLSEKLD 37 (190)
T ss_dssp ---------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666556666665555555554
No 71
>4i1l_A Scurfin, forkhead box protein P3; FOXP3, dimerization, complex ensemble, stability, regulatory activity, acetyation, DNA-binding, metal-binding; 2.10A {Mus musculus}
Probab=31.51 E-value=91 Score=26.50 Aligned_cols=41 Identities=10% Similarity=0.113 Sum_probs=29.9
Q ss_pred HHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 012393 314 RANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSL 354 (464)
Q Consensus 314 ~A~~~K~~TakdI~~~tK~i~dLV~qLa~ERErL~~Qissl 354 (464)
.....=+.+.-+--++..++--|=.||+.||+||+-=..-|
T Consensus 36 ~eH~LddrS~AQcrvQ~qvVq~LE~QL~kEreRLqAM~~HL 76 (93)
T 4i1l_A 36 ADHLLDEKGKAQCLLQREVVQSLEQQLELEKEKLGAMQAHL 76 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred cccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455566677788888999999999999998755444
No 72
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=29.96 E-value=2.3e+02 Score=29.69 Aligned_cols=31 Identities=16% Similarity=0.255 Sum_probs=22.5
Q ss_pred HHHhhhHHHHHHHHHHHHhhhhhhhhHHHHH
Q 012393 163 EQLNEMDNFIESLKESLYGAESRAESAEEKV 193 (464)
Q Consensus 163 ~~isdmEnvIedLK~kVskAESRAe~AEskc 193 (464)
+.|+.++.+++.++.+|.+-|+....-..+|
T Consensus 168 ~~i~~L~~~~~~l~~ki~~l~~~~~~~~~~~ 198 (464)
T 1m1j_B 168 SSLRVLRAVIDSLHKKIQKLENAIATQTDYC 198 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4677778888888888888777766555555
No 73
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=29.08 E-value=1.6e+02 Score=24.51 Aligned_cols=53 Identities=32% Similarity=0.332 Sum_probs=43.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHH
Q 012393 128 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLY 180 (464)
Q Consensus 128 SE~~sL~eKV~sLEeQLkese~Ql~~akas~Ea~~~~isdmEnvIedLK~kVs 180 (464)
-|+-.|+-||..+|..---|+-.|.+.++.....+.++..=+.-|+-|.++++
T Consensus 26 qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l~ 78 (81)
T 3qh9_A 26 QELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQLS 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 56778999999999999999999999998877777777777777777776654
No 74
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=26.92 E-value=1.1e+02 Score=27.44 Aligned_cols=16 Identities=25% Similarity=0.239 Sum_probs=5.8
Q ss_pred HHHHhhHHHHHHHhHh
Q 012393 225 ENQLRDLEIQLQQAKV 240 (464)
Q Consensus 225 E~qLkese~QLqhA~A 240 (464)
|++...+..|+..+.+
T Consensus 102 e~r~~~L~~ql~e~e~ 117 (135)
T 2e7s_A 102 EILNKRLTEQLREKDM 117 (135)
T ss_dssp HHHHHHHHHTTTHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 75
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=26.76 E-value=40 Score=23.86 Aligned_cols=28 Identities=36% Similarity=0.436 Sum_probs=23.5
Q ss_pred hhhhHHHHHHhhhhhhHHHHHHHhhhhc
Q 012393 185 RAESAEEKVTQLTDTNLELSEEINFLKG 212 (464)
Q Consensus 185 RAe~AEskc~lLteTN~ELneEL~~Lks 212 (464)
|..+-|.|+..|-..|.+|..|+.-||+
T Consensus 1 RM~QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 1 RMAQLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4567899999999999999999988876
No 76
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=26.64 E-value=1.9e+02 Score=23.28 Aligned_cols=74 Identities=15% Similarity=0.258 Sum_probs=38.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHHH
Q 012393 128 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEI 207 (464)
Q Consensus 128 SE~~sL~eKV~sLEeQLkese~Ql~~akas~Ea~~~~isdmEnvIedLK~kVskAESRAe~AEskc~lLteTN~ELneEL 207 (464)
+|..+|.-...+||.++++.+.+... ++.++...|..|...+..+....+.--.....|-..-+.|.-|+
T Consensus 3 ~eie~L~~q~~~Le~~l~e~E~~~~~----------~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EI 72 (86)
T 1x8y_A 3 CQLSQLQCQLAAKEAKLRDLEDSLAR----------ERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEI 72 (86)
T ss_dssp ---------CTTHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 45666666777788888877765322 34445555555555555544444444556666666666777666
Q ss_pred hhhh
Q 012393 208 NFLK 211 (464)
Q Consensus 208 ~~Lk 211 (464)
..-|
T Consensus 73 atYR 76 (86)
T 1x8y_A 73 HAYR 76 (86)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 77
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=25.84 E-value=3.1e+02 Score=23.35 Aligned_cols=84 Identities=20% Similarity=0.266 Sum_probs=42.5
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHhhhhhch---hh-hHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHH
Q 012393 127 NSEVLTMKEKVKSLEEQLKESEIRLQNANACF---QT-SQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLE 202 (464)
Q Consensus 127 ~SE~~sL~eKV~sLEeQLkese~Ql~~akas~---Ea-~~~~isdmEnvIedLK~kVskAESRAe~AEskc~lLteTN~E 202 (464)
.+|+..++-.|++|+-++.....+..+..++. +. +...+.++...|.+|...+..+......--.....|-..-+.
T Consensus 37 k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~ 116 (131)
T 3tnu_A 37 KSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTR 116 (131)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555556655555544433322222221 11 223555666666666666666555555555566666666666
Q ss_pred HHHHHhhh
Q 012393 203 LSEEINFL 210 (464)
Q Consensus 203 LneEL~~L 210 (464)
|.-|+..-
T Consensus 117 Ld~EIatY 124 (131)
T 3tnu_A 117 LEQEIATY 124 (131)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666543
No 78
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=25.67 E-value=1.2e+02 Score=24.83 Aligned_cols=52 Identities=23% Similarity=0.272 Sum_probs=21.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHH----hhhHHHHHHHHHHH
Q 012393 128 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQL----NEMDNFIESLKESL 179 (464)
Q Consensus 128 SE~~sL~eKV~sLEeQLkese~Ql~~akas~Ea~~~~i----sdmEnvIedLK~kV 179 (464)
+|+-+++.|++.+|..=.+.+-++..+....+.++.+. ..+.++++-|=.||
T Consensus 6 ~e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI 61 (79)
T 3cvf_A 6 AEREETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSL 61 (79)
T ss_dssp ----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 45555666665555444444444444444433333221 23444455444444
No 79
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=25.06 E-value=3.1e+02 Score=23.18 Aligned_cols=84 Identities=19% Similarity=0.285 Sum_probs=43.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhhhch---hh-hHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHH
Q 012393 128 SEVLTMKEKVKSLEEQLKESEIRLQNANACF---QT-SQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLEL 203 (464)
Q Consensus 128 SE~~sL~eKV~sLEeQLkese~Ql~~akas~---Ea-~~~~isdmEnvIedLK~kVskAESRAe~AEskc~lLteTN~EL 203 (464)
+|+..++-.|++|+-.+.....+..+..++. +. +...+.++...|.+|...+..+......--.....|-..-+.|
T Consensus 36 ~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~L 115 (129)
T 3tnu_B 36 HEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLREYQELMNTKLAL 115 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444445444444443333322222211 11 2335566666676676666666555555555666666666667
Q ss_pred HHHHhhhh
Q 012393 204 SEEINFLK 211 (464)
Q Consensus 204 neEL~~Lk 211 (464)
.-|+..-|
T Consensus 116 d~EIatYR 123 (129)
T 3tnu_B 116 DVEIATYR 123 (129)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665443
No 80
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=24.84 E-value=98 Score=23.27 Aligned_cols=28 Identities=29% Similarity=0.466 Sum_probs=22.7
Q ss_pred hhhHHHHHHhhhhhhHHHHHHHhhhhcC
Q 012393 186 AESAEEKVTQLTDTNLELSEEINFLKGN 213 (464)
Q Consensus 186 Ae~AEskc~lLteTN~ELneEL~~Lks~ 213 (464)
.+.-+.++..|+..|.+|..+++.|+..
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e 51 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNE 51 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667778888888888888888888774
No 81
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=23.43 E-value=2.1e+02 Score=24.68 Aligned_cols=35 Identities=14% Similarity=0.335 Sum_probs=21.4
Q ss_pred HHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHh
Q 012393 234 QLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKS 268 (464)
Q Consensus 234 QLqhA~As~eAs~eqQ~mL~stikDME~vIeDLks 268 (464)
|+..-+..++.-..+=..-|++++|+|.++.+-..
T Consensus 26 ei~eLk~~ve~lEkERDFYF~KLRdIEiLcQe~~~ 60 (106)
T 4e61_A 26 EIEQYKGTVSTLEIEREFYFNKLRDIEILVHTTQD 60 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444333445678899999998887643
No 82
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=23.11 E-value=58 Score=23.19 Aligned_cols=28 Identities=36% Similarity=0.402 Sum_probs=25.1
Q ss_pred hhhhHHHHHHhhhhhhHHHHHHHhhhhc
Q 012393 185 RAESAEEKVTQLTDTNLELSEEINFLKG 212 (464)
Q Consensus 185 RAe~AEskc~lLteTN~ELneEL~~Lks 212 (464)
|..+-|.||..|-.-|.+|..|..-||+
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 6678899999999999999999988876
No 83
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=22.91 E-value=3.1e+02 Score=22.41 Aligned_cols=43 Identities=16% Similarity=0.269 Sum_probs=36.1
Q ss_pred HhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 012393 320 AASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLV 362 (464)
Q Consensus 320 ~~TakdI~~~tK~i~dLV~qLa~ERErL~~Qissl~~eNkiL~ 362 (464)
..|-.|+..-.--|.+++.+|..|...+..-|..+.++|.-|-
T Consensus 31 rrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~ 73 (78)
T 3iv1_A 31 KRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELS 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777999999999999999999999998887663
No 84
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=22.78 E-value=1.6e+02 Score=21.81 Aligned_cols=20 Identities=25% Similarity=0.517 Sum_probs=17.2
Q ss_pred HHHHHHHhhhhhhHHHHHHh
Q 012393 347 IQKQVYSLTSENKLLVEKLQ 366 (464)
Q Consensus 347 L~~Qissl~~eNkiL~~k~k 366 (464)
|...||+|..||.+|-+.++
T Consensus 22 LEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 22 LEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHhc
Confidence 55679999999999998876
No 85
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=22.53 E-value=3.1e+02 Score=22.18 Aligned_cols=72 Identities=15% Similarity=0.214 Sum_probs=48.8
Q ss_pred hhhccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 012393 286 VLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLL 361 (464)
Q Consensus 286 ~LsEtN~eLneELsflrskl~~LE~sL~~A~~~K~~TakdI~~~tK~i~dLV~qLa~ERErL~~Qissl~~eNkiL 361 (464)
.++-.|..|--|+..++.-++++-.+....-......-.||..-+|.+- .+..-|--|..||.||.+|=..|
T Consensus 11 ~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD----~a~l~r~dLE~kvesL~eEl~fL 82 (86)
T 3swk_A 11 QLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVD----NASLARLDLERKVESLQEEIAFL 82 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677777788888888888777776655555555566666666544 45556777888999988775443
No 86
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=22.33 E-value=3.6e+02 Score=22.86 Aligned_cols=52 Identities=23% Similarity=0.269 Sum_probs=38.9
Q ss_pred hHHHHHHHhHHHHHhhhhHHHHHhhhcCchhhhhHHHHHHHHHHHHHHHHHHH
Q 012393 99 SELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRL 151 (464)
Q Consensus 99 seLksKLk~s~EQLe~k~~~Lekl~~s~~SE~~sL~eKV~sLEeQLkese~Ql 151 (464)
.+|..+|..+++-|..+...+.+|.+. ..-.....+.|.-|..|+.-|..--
T Consensus 5 ~~L~~~L~~aEeaL~~kq~~id~lke~-~~q~~~~~E~i~vLk~Qv~IY~~DF 56 (94)
T 3jsv_C 5 EDLRQQLQQAEEALVAKQELIDKLKEE-AEQHKIVMETVPVLKAQADIYKADF 56 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999988888888775 4444444577888888877776543
No 87
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=22.14 E-value=29 Score=26.40 Aligned_cols=30 Identities=27% Similarity=0.457 Sum_probs=16.7
Q ss_pred hhhhhhhhccchhhhhhhhhhhhHHHHHHH
Q 012393 281 EEQCIVLSEDNFELKNKQSFMRDKIKILES 310 (464)
Q Consensus 281 E~kc~~LsEtN~eLneELsflrskl~~LE~ 310 (464)
|.++..|+..|..|..+++.|+.-+..|..
T Consensus 28 e~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 28 EEKVKTLKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555666776666666666555543
No 88
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=22.06 E-value=1e+02 Score=27.65 Aligned_cols=29 Identities=24% Similarity=0.375 Sum_probs=16.6
Q ss_pred HhhhHHHHHHHHHHHHhhhhhhhhHHHHH
Q 012393 165 LNEMDNFIESLKESLYGAESRAESAEEKV 193 (464)
Q Consensus 165 isdmEnvIedLK~kVskAESRAe~AEskc 193 (464)
+++.+.-+..|...+.+...+-..||..+
T Consensus 41 l~~~~~e~~~L~~~l~eE~~~R~~aE~~~ 69 (135)
T 2e7s_A 41 LSDRDDEVKRLREDIAKENELRTKAEEEA 69 (135)
T ss_dssp TTTHHHHHHTHHHHHHHTTSHHHHHHHTT
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666555555544
No 89
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=21.96 E-value=2.3e+02 Score=23.27 Aligned_cols=58 Identities=16% Similarity=0.253 Sum_probs=38.8
Q ss_pred HHHHHhHhhhhhhHHHHHhHHHHHhhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhccchhhhhh
Q 012393 233 IQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNK 297 (464)
Q Consensus 233 ~QLqhA~As~eAs~eqQ~mL~stikDME~vIeDLksKv~kaE~rae~~E~kc~~LsEtN~eLneE 297 (464)
..+.++.|-.++-.--|..|..-=.-++.+|.+|+.-....++. |.+|.+.|-+|..-
T Consensus 18 E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~n-------i~~lk~K~~EL~~~ 75 (78)
T 3iv1_A 18 EEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKN-------IELLKKKDEELSSA 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHTT
T ss_pred HHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 35667777777776555567765555667788887776655555 77777777776543
No 90
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=21.96 E-value=1.3e+02 Score=30.14 Aligned_cols=46 Identities=20% Similarity=0.208 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHH
Q 012393 135 EKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLY 180 (464)
Q Consensus 135 eKV~sLEeQLkese~Ql~~akas~Ea~~~~isdmEnvIedLK~kVs 180 (464)
.|++.|.+++..++..+.+..+.....+..+..++.-|.+|+.+|.
T Consensus 5 ~~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~ 50 (323)
T 1lwu_C 5 KTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLV 50 (323)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444333322223333333334444444443
No 91
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=21.88 E-value=1.9e+02 Score=23.28 Aligned_cols=43 Identities=14% Similarity=0.062 Sum_probs=33.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhh
Q 012393 325 EVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQY 367 (464)
Q Consensus 325 dI~~~tK~i~dLV~qLa~ERErL~~Qissl~~eNkiL~~k~k~ 367 (464)
++.++--.-+|++.+|....=+-+.+|..|...-+.|..+++.
T Consensus 18 ~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~ 60 (78)
T 3efg_A 18 ELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGK 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555667888888888888999999999999999999986
No 92
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=21.74 E-value=2.6e+02 Score=22.51 Aligned_cols=49 Identities=18% Similarity=0.313 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHH----hhhHHHHHHHHHHHH
Q 012393 132 TMKEKVKSLEEQLKESEIRLQNANACFQTSQEQL----NEMDNFIESLKESLY 180 (464)
Q Consensus 132 sL~eKV~sLEeQLkese~Ql~~akas~Ea~~~~i----sdmEnvIedLK~kVs 180 (464)
+++.|++.+|..=.+.+.++..+....+.++++. ..+.++++-|=.||.
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~ 56 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIF 56 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3445554444444444443333333333333211 244455555544443
No 93
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=21.17 E-value=67 Score=22.73 Aligned_cols=28 Identities=14% Similarity=0.214 Sum_probs=24.5
Q ss_pred hhhhHHHHHHhhhhhhHHHHHHHhhhhc
Q 012393 185 RAESAEEKVTQLTDTNLELSEEINFLKG 212 (464)
Q Consensus 185 RAe~AEskc~lLteTN~ELneEL~~Lks 212 (464)
|..+-|.||..|-.-|.+|..|+.-||+
T Consensus 1 RMnQLEdKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 1 RMKXIEXKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4567899999999999999999988876
No 94
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=21.17 E-value=63 Score=23.03 Aligned_cols=28 Identities=18% Similarity=0.283 Sum_probs=24.5
Q ss_pred hhhhHHHHHHhhhhhhHHHHHHHhhhhc
Q 012393 185 RAESAEEKVTQLTDTNLELSEEINFLKG 212 (464)
Q Consensus 185 RAe~AEskc~lLteTN~ELneEL~~Lks 212 (464)
|..+-|.|+..|-..|.+|..|+.-||+
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 6678899999999999999999988876
No 95
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=20.93 E-value=1.3e+02 Score=23.86 Aligned_cols=40 Identities=28% Similarity=0.354 Sum_probs=18.2
Q ss_pred HHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhHHHHHHHhhh
Q 012393 164 QLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFL 210 (464)
Q Consensus 164 ~isdmEnvIedLK~kVskAESRAe~AEskc~lLteTN~ELneEL~~L 210 (464)
.|.++|.-+.+|.... +.....+..|-..+..|..|+..|
T Consensus 30 ~i~~LE~~v~~le~~~-------~~l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 30 HLKALETQVVTLKELH-------SSTTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4445555444444322 223344445555555555555443
No 96
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=20.49 E-value=3.5e+02 Score=22.08 Aligned_cols=26 Identities=31% Similarity=0.336 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHhh
Q 012393 342 TQRELIQKQVYSLTSENKLLVEKLQY 367 (464)
Q Consensus 342 ~ERErL~~Qissl~~eNkiL~~k~k~ 367 (464)
---|||+..|-|+.=|||+|.+++..
T Consensus 46 kd~ErLNDEiislNIENNlL~~rl~~ 71 (75)
T 3a7o_A 46 KNTERLNDELISGTIENNVLQQKLSD 71 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ccHHHhhHHHHHhHHHHHHHHHHHHH
Confidence 34689999999999999999999864
Done!