Query 012393
Match_columns 464
No_of_seqs 58 out of 60
Neff 3.3
Searched_HMMs 13730
Date Mon Mar 25 08:34:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012393.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/012393hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ap3a1 a.24.27.1 (A:12-196) H 44.2 54 0.004 24.0 16.0 23 128-150 22-44 (185)
2 d1grja1 a.2.1.1 (A:2-79) GreA 36.3 43 0.0031 25.2 6.4 24 241-264 46-69 (78)
3 d1fxka_ a.2.5.1 (A:) Prefoldin 29.1 1.1E+02 0.0081 23.1 8.9 79 79-164 5-101 (107)
4 d1ud0a_ a.8.4.1 (A:) DnaK {Rat 14.6 1.1E+02 0.0081 22.2 4.9 49 126-180 27-75 (84)
5 d1fxkc_ a.2.5.1 (C:) Prefoldin 13.2 2.6E+02 0.019 21.1 9.2 22 294-315 86-107 (133)
6 d1fxka_ a.2.5.1 (A:) Prefoldin 12.0 2.8E+02 0.02 20.7 9.0 24 167-190 62-85 (107)
7 d1f5na1 a.114.1.1 (A:284-583) 11.1 3.8E+02 0.028 21.7 10.6 18 195-212 281-298 (300)
8 d1d0da_ g.8.1.2 (A:) Anticoagu 9.8 72 0.0052 23.1 2.2 37 372-408 21-57 (60)
9 d2f23a1 a.2.1.1 (A:3-77) GreA 9.5 3.3E+02 0.024 19.9 6.3 23 242-264 46-68 (75)
10 d1nkpa_ a.38.1.1 (A:) Myc prot 8.4 2E+02 0.015 20.7 4.5 22 192-213 67-88 (88)
No 1
>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}
Probab=44.23 E-value=54 Score=23.98 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=12.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHH
Q 012393 128 SEVLTMKEKVKSLEEQLKESEIR 150 (464)
Q Consensus 128 SE~~sL~eKV~sLEeQLkese~Q 150 (464)
..+..+..++..++.++.....+
T Consensus 22 ~~~~~~~~k~~~~e~~~~~~~~~ 44 (185)
T d2ap3a1 22 EPIKTVGKKIAELDEKKKKLTED 44 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445556666666665544443
No 2
>d1grja1 a.2.1.1 (A:2-79) GreA transcript cleavage protein, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=36.27 E-value=43 Score=25.21 Aligned_cols=24 Identities=29% Similarity=0.322 Sum_probs=17.8
Q ss_pred hhhhhHHHHHhHHHHHhhHHHHHH
Q 012393 241 SSEASQEQQSMLYSAIWDMETLIE 264 (464)
Q Consensus 241 s~eAs~eqQ~mL~stikDME~vIe 264 (464)
-=.|-+++|+++...|.+++..+.
T Consensus 46 eY~aAKe~q~~~e~RI~eLe~~L~ 69 (78)
T d1grja1 46 EYHAAREQQGFCEGRIKDIEAKLS 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334557889988888888887664
No 3
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=29.09 E-value=1.1e+02 Score=23.09 Aligned_cols=79 Identities=19% Similarity=0.212 Sum_probs=41.6
Q ss_pred HHhhhhhHHhhhccccccchhHHHHHHHhHHHHHhhhhHHHHHhhh---c--------------Cchh-hhhHHHHHHHH
Q 012393 79 EMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLES---T--------------KNSE-VLTMKEKVKSL 140 (464)
Q Consensus 79 el~gkLq~~Qf~L~as~~REseLksKLk~s~EQLe~k~~~Lekl~~---s--------------~~SE-~~sL~eKV~sL 140 (464)
+.+.+++.+|.+|.. +.+++..-.-++..-+.+++.|.. + .-+| ...|.+++..+
T Consensus 5 e~~~~~q~lq~el~~-------~~~q~~~le~q~~E~~~vl~eL~~l~~d~~vyk~vG~vLv~~~~~e~~~~l~~~~e~l 77 (107)
T d1fxka_ 5 HQLAQFQQLQQQAQA-------ISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETL 77 (107)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHhcchhhcCcHHHHHHHHHHHHHHH
Confidence 455666666666653 333444444444444444444333 2 1122 34567777777
Q ss_pred HHHHHHHHHHHhhhhhchhhhHHH
Q 012393 141 EEQLKESEIRLQNANACFQTSQEQ 164 (464)
Q Consensus 141 EeQLkese~Ql~~akas~Ea~~~~ 164 (464)
+..++..+.|+.......+..+.+
T Consensus 78 ~~~i~~l~~q~~~l~~~l~~~~~~ 101 (107)
T d1fxka_ 78 QLREKTIERQEERVMKKLQEMQVN 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777666555554443333
No 4
>d1ud0a_ a.8.4.1 (A:) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=14.59 E-value=1.1e+02 Score=22.20 Aligned_cols=49 Identities=16% Similarity=0.267 Sum_probs=38.3
Q ss_pred CchhhhhHHHHHHHHHHHHHHHHHHHhhhhhchhhhHHHHhhhHHHHHHHHHHHH
Q 012393 126 KNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLY 180 (464)
Q Consensus 126 ~~SE~~sL~eKV~sLEeQLkese~Ql~~akas~Ea~~~~isdmEnvIedLK~kVs 180 (464)
++.+..++.+++...++||-+ +..|+.+.+..++..++.++.-+=.+++
T Consensus 27 ~~~dk~~i~~~l~e~~~WL~~------n~~a~~ee~~~k~~eLe~~~~PI~~k~y 75 (84)
T d1ud0a_ 27 NDEDKQKILDKCNEIISWLDK------NQTAEKEEFEHQQKELEKVCNPIITKLY 75 (84)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHTHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHhc------CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888999999999999953 2346667788899999998887766655
No 5
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=13.17 E-value=2.6e+02 Score=21.09 Aligned_cols=22 Identities=18% Similarity=0.344 Sum_probs=12.8
Q ss_pred hhhhhhhhhhHHHHHHHhhHHH
Q 012393 294 LKNKQSFMRDKIKILESSLNRA 315 (464)
Q Consensus 294 LneELsflrskl~~LE~sL~~A 315 (464)
+.+=+.|+..|++.++..+...
T Consensus 86 ~~eA~~~l~~ri~~l~~~~~~l 107 (133)
T d1fxkc_ 86 FEDAMESIKSQKNELESTLQKM 107 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777766666555443
No 6
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=12.04 E-value=2.8e+02 Score=20.67 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=11.6
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhHH
Q 012393 167 EMDNFIESLKESLYGAESRAESAE 190 (464)
Q Consensus 167 dmEnvIedLK~kVskAESRAe~AE 190 (464)
+.+.++.+|+.++.--+.+...-+
T Consensus 62 ~~~e~~~~l~~~~e~l~~~i~~l~ 85 (107)
T d1fxka_ 62 AKDELTEELQEKLETLQLREKTIE 85 (107)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555544444443333
No 7
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.13 E-value=3.8e+02 Score=21.75 Aligned_cols=18 Identities=17% Similarity=0.176 Sum_probs=10.9
Q ss_pred hhhhhhHHHHHHHhhhhc
Q 012393 195 QLTDTNLELSEEINFLKG 212 (464)
Q Consensus 195 lLteTN~ELneEL~~Lks 212 (464)
.+.+-...|..++..|+.
T Consensus 281 ~~~~~~~~l~~ei~~Lk~ 298 (300)
T d1f5na1 281 GFQKESRIMKNEIQDLQT 298 (300)
T ss_dssp TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 345556666777766653
No 8
>d1d0da_ g.8.1.2 (A:) Anticoagulant protein, factor Xa inhibitor {Soft tick (Ornithodoros moubata) [TaxId: 6938]}
Probab=9.78 E-value=72 Score=23.07 Aligned_cols=37 Identities=11% Similarity=0.238 Sum_probs=30.0
Q ss_pred CCceecccCCCCCccccccCCCCCCCccccchhhhhh
Q 012393 372 SSATMYNAGDTDDKELLINPTNNLAGATVKTSEDAVS 408 (464)
Q Consensus 372 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~ 408 (464)
+-...|.||-.+-..+-|||..+.++.--+|-+|..+
T Consensus 21 ~~~~~f~~~k~~c~~fwicpe~~~g~dyyss~~dc~~ 57 (60)
T d1d0da_ 21 GERAYFRNGKGGCDSFWICPEDHTGADYYSSYRDCFN 57 (60)
T ss_dssp CEEEEEECSSSSEEEEEECTTTCCSCCCCCSHHHHHH
T ss_pred ceEEeccCCCCCCCcceECCccCCCccchhhHHHHHH
Confidence 3345677888888899999999999988899888654
No 9
>d2f23a1 a.2.1.1 (A:3-77) GreA transcript cleavage protein, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=9.46 E-value=3.3e+02 Score=19.86 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=17.1
Q ss_pred hhhhHHHHHhHHHHHhhHHHHHH
Q 012393 242 SEASQEQQSMLYSAIWDMETLIE 264 (464)
Q Consensus 242 ~eAs~eqQ~mL~stikDME~vIe 264 (464)
=.|-+++|+++.+.|.+++..+.
T Consensus 46 Y~aAke~q~~~e~rI~eLe~~L~ 68 (75)
T d2f23a1 46 LEAAKQEKARIEARIDSLEDILS 68 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556788888888888887664
No 10
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.42 E-value=2e+02 Score=20.71 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=16.8
Q ss_pred HHHhhhhhhHHHHHHHhhhhcC
Q 012393 192 KVTQLTDTNLELSEEINFLKGN 213 (464)
Q Consensus 192 kc~lLteTN~ELneEL~~Lks~ 213 (464)
+...|..-|.+|..+|+.|+|+
T Consensus 67 ~~~~l~~~~~~L~~~l~~L~gc 88 (88)
T d1nkpa_ 67 EEDLLRKRREQLKHKLEQLGGC 88 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHhcCC
Confidence 4556777888888888888874
Done!