BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012396
(464 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BCR|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 263
Score = 234 bits (597), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 120/267 (44%), Positives = 154/267 (57%), Gaps = 11/267 (4%)
Query: 24 VEAYASLLDRITALPGQPQVGFQQYSGYVTVDEKKQRALFYYFAEAETDPASKPLVLWLN 83
VE DRI LPGQP V F YSGY+TVDE R+LFY EA D PLVLWLN
Sbjct: 1 VEPSGHAADRIARLPGQPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLN 60
Query: 84 GGPGCSSLGVGAFSENGPFR--PNGQVLVRNEYSWNREANMLFLETPIGVGFSYSKDASS 141
GGPGCSS+ GA E G FR P G LV NEY WN+ AN+LFL++P GVGFSY+ +S
Sbjct: 61 GGPGCSSVAYGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSD 120
Query: 142 YQGVGDKITARDNLVFLKNWFLKFPQYRNRSLFITGESYAGHYIPQLADLMLEFNKKEEL 201
GD TA D+ FL WF +FP Y+ R +I GESYAGHY+P+L+ L+ K +
Sbjct: 121 IYTSGDNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLV--HRSKNPV 178
Query: 202 FNLKGIALGNPVLEFATDFNSRAEFFWSHGLISDATYTMFTSFCNYSRYVSEYYRGSVSP 261
NLKG +GN +++ D+ EF+W+HG++SD TY C + ++ SP
Sbjct: 179 INLKGFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHP------SP 232
Query: 262 ICSRVMSLVSRETSRFVDKYDVTLDVC 288
C + + E +D Y + VC
Sbjct: 233 ACDAATDVATAEQGN-IDMYSLYTPVC 258
>pdb|3SC2|A Chain A, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 259
Score = 233 bits (595), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 120/267 (44%), Positives = 154/267 (57%), Gaps = 11/267 (4%)
Query: 24 VEAYASLLDRITALPGQPQVGFQQYSGYVTVDEKKQRALFYYFAEAETDPASKPLVLWLN 83
VE DRI LPGQP V F YSGY+TVDE R+LFY EA D PLVLWLN
Sbjct: 1 VEPSGHAADRIARLPGQPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLN 60
Query: 84 GGPGCSSLGVGAFSENGPFR--PNGQVLVRNEYSWNREANMLFLETPIGVGFSYSKDASS 141
GGPGCSS+ GA E G FR P G LV NEY WN+ AN+LFL++P GVGFSY+ +S
Sbjct: 61 GGPGCSSVAYGASEELGAFRVKPAGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSD 120
Query: 142 YQGVGDKITARDNLVFLKNWFLKFPQYRNRSLFITGESYAGHYIPQLADLMLEFNKKEEL 201
GD TA D+ FL WF +FP Y+ R +I GESYAGHY+P+L+ L+ K +
Sbjct: 121 IYTSGDNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLV--HRSKNPV 178
Query: 202 FNLKGIALGNPVLEFATDFNSRAEFFWSHGLISDATYTMFTSFCNYSRYVSEYYRGSVSP 261
NLKG +GN +++ D+ EF+W+HG++SD TY C + ++ SP
Sbjct: 179 INLKGFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHP------SP 232
Query: 262 ICSRVMSLVSRETSRFVDKYDVTLDVC 288
C + + E +D Y + VC
Sbjct: 233 ACDAATDVATAEQGN-IDMYSLYTPVC 258
>pdb|1WHT|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 256
Score = 233 bits (593), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 118/259 (45%), Positives = 152/259 (58%), Gaps = 11/259 (4%)
Query: 32 DRITALPGQPQVGFQQYSGYVTVDEKKQRALFYYFAEAETDPASKPLVLWLNGGPGCSSL 91
DRI LPGQP V F YSGY+TVDE R+LFY EA D PLVLWLNGGPGCSS+
Sbjct: 5 DRIARLPGQPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSSV 64
Query: 92 GVGAFSENGPFR--PNGQVLVRNEYSWNREANMLFLETPIGVGFSYSKDASSYQGVGDKI 149
GA E G FR P G LV NEY WN+ AN+LFL++P GVGFSY+ +S GD
Sbjct: 65 AYGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDNR 124
Query: 150 TARDNLVFLKNWFLKFPQYRNRSLFITGESYAGHYIPQLADLMLEFNKKEELFNLKGIAL 209
TA D+ FL WF +FP Y+ R +I GESYAGHY+P+L+ L+ K + NLKG +
Sbjct: 125 TAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLV--HRSKNPVINLKGFMV 182
Query: 210 GNPVLEFATDFNSRAEFFWSHGLISDATYTMFTSFCNYSRYVSEYYRGSVSPICSRVMSL 269
GN +++ D+ EF+W+HG++SD TY C + ++ SP C +
Sbjct: 183 GNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHP------SPACDAATDV 236
Query: 270 VSRETSRFVDKYDVTLDVC 288
+ E +D Y + VC
Sbjct: 237 ATAEQGN-IDMYSLYTPVC 254
>pdb|1WHS|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 255
Score = 233 bits (593), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 118/259 (45%), Positives = 152/259 (58%), Gaps = 11/259 (4%)
Query: 32 DRITALPGQPQVGFQQYSGYVTVDEKKQRALFYYFAEAETDPASKPLVLWLNGGPGCSSL 91
DRI LPGQP V F YSGY+TVDE R+LFY EA D PLVLWLNGGPGCSS+
Sbjct: 4 DRIARLPGQPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSSV 63
Query: 92 GVGAFSENGPFR--PNGQVLVRNEYSWNREANMLFLETPIGVGFSYSKDASSYQGVGDKI 149
GA E G FR P G LV NEY WN+ AN+LFL++P GVGFSY+ +S GD
Sbjct: 64 AYGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDNR 123
Query: 150 TARDNLVFLKNWFLKFPQYRNRSLFITGESYAGHYIPQLADLMLEFNKKEELFNLKGIAL 209
TA D+ FL WF +FP Y+ R +I GESYAGHY+P+L+ L+ K + NLKG +
Sbjct: 124 TAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLV--HRSKNPVINLKGFMV 181
Query: 210 GNPVLEFATDFNSRAEFFWSHGLISDATYTMFTSFCNYSRYVSEYYRGSVSPICSRVMSL 269
GN +++ D+ EF+W+HG++SD TY C + ++ SP C +
Sbjct: 182 GNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHP------SPACDAATDV 235
Query: 270 VSRETSRFVDKYDVTLDVC 288
+ E +D Y + VC
Sbjct: 236 ATAEQGN-IDMYSLYTPVC 253
>pdb|1IVY|A Chain A, Physiological Dimer Hpp Precursor
pdb|1IVY|B Chain B, Physiological Dimer Hpp Precursor
Length = 452
Score = 200 bits (509), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 143/464 (30%), Positives = 226/464 (48%), Gaps = 53/464 (11%)
Query: 32 DRITALPG-QPQVGFQQYSGYVTVDEKKQRALFYYFAEAETDPASKPLVLWLNGGPGCSS 90
D I LPG Q F+QYSGY+ K L Y+F E++ DP + P+VLWLNGGPGCSS
Sbjct: 5 DEIQRLPGLAKQPSFRQYSGYLKSSGSKH--LHYWFVESQKDPENSPVVLWLNGGPGCSS 62
Query: 91 LGVGAFSENGPF--RPNGQVLVRNEYSWNREANMLFLETPIGVGFSYSKDASSYQGVGDK 148
L G +E+GPF +P+G L N YSWN AN+L+LE+P GVGFSYS D + D
Sbjct: 63 LD-GLLTEHGPFLVQPDGVTLEYNPYSWNLIANVLYLESPAGVGFSYSDD--KFYATNDT 119
Query: 149 ITARDNLVFLKNWFLKFPQYRNRSLFITGESYAGHYIPQLADLMLEFNKKEELFNLKGIA 208
A+ N L+++F FP+Y+N LF+TGESYAG YIP LA L+++ + NL+G+A
Sbjct: 120 EVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQ----DPSMNLQGLA 175
Query: 209 LGNPVLEFATDFNSRAEFFWSHGLISDATYTMFTSFCNYSRYVSEYYRGSVSPICSRVMS 268
+GN + + + NS F + HGL+ + ++ + C + Y + C +
Sbjct: 176 VGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHCCSQNKCNFYDNKDLE--CVTNLQ 233
Query: 269 LVSRET-------------------SRFVDKYDVTLDVCISSVLS--------QSKVLTP 301
V+R S F + D + + ++ + +L
Sbjct: 234 EVARIVGNSGLNIYNLYAPCAGGVPSHFRYEKDTVVVQDLGNIFTRLPLKRMWHQALLRS 293
Query: 302 KQXXXXXXXXXXXXXXXNYLNRKDVQKALHARLVGVRSWAVCSNILDYELLDLEIPTITI 361
YLN V+KAL+ + W +C+ +++ + L +
Sbjct: 294 GDKVRMDPPCTNTTAASTYLNNPYVRKALNIP-EQLPQWDMCNFLVNLQYRRLYRSMNSQ 352
Query: 362 VGKLVKA-GIPVMVYSGDQDSVIPLTGSRKLVNGLAKELKLGTTVPYRVWF-----EGQQ 415
KL+ + +++Y+GD D G V+ L ++++ V R W G+Q
Sbjct: 353 YLKLLSSQKYQILLYNGDVDMACNFMGDEWFVDSLNQKME----VQRRPWLVKYGDSGEQ 408
Query: 416 VGGWTQVYGNILSFATIRGASHEAPFSQPERSLVLFKAFLDSRP 459
+ G+ + + +I +F TI+GA H P +P + +F FL+ +P
Sbjct: 409 IAGFVKEFSHI-AFLTIKGAGHMVPTDKPLAAFTMFSRFLNKQP 451
>pdb|1GXS|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|C Chain C, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 270
Score = 186 bits (471), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 108/261 (41%), Positives = 146/261 (55%), Gaps = 14/261 (5%)
Query: 32 DRITALPGQPQ-VGFQQYSGYVTVDEKKQRALFYYFAEAETDPASKP-LVLWLNGGPGCS 89
DRI LPGQP V F Y GYVT+D+ RAL+Y+F EA+T + LVLWLNGGPGCS
Sbjct: 8 DRILGLPGQPNGVAFGMYGGYVTIDDNNGRALYYWFQEADTADPAAAPLVLWLNGGPGCS 67
Query: 90 SLGVGAFSENGPFR--PNGQVLVRNEYSWNREANMLFLETPIGVGFSYSKDASSYQGVGD 147
S+G+GA E G FR NG+ L+ NEY+WN+ AN+LF E+P GVGFSYS + SS +GD
Sbjct: 68 SIGLGAMQELGAFRVHTNGESLLLNEYAWNKAANILFAESPAGVGFSYS-NTSSDLSMGD 126
Query: 148 KITARDNLVFLKNWFLKFPQYRNRSLFITGESYAGHYIPQLADLMLEFNKKEELFNLKGI 207
A+D FL WF +FP Y R +I GES GH+IPQL+ ++ N +G+
Sbjct: 127 DKMAQDTYTFLVKWFERFPHYNYREFYIAGES--GHFIPQLSQVVYRNRNNSPFINFQGL 184
Query: 208 ALGNPVLEFATDFNSRAEFFWSHGLISDATYTMFTSFCNYSRYVSEYYRGSVSPICSRVM 267
+ + + D E +W HGLISD T C + ++ +P C+ V
Sbjct: 185 LVSSGLTNDHEDMIGMFESWWHHGLISDETRDSGLKVCPGTSFMHP------TPECTEVW 238
Query: 268 SLVSRETSRFVDKYDVTLDVC 288
+ E ++ Y + C
Sbjct: 239 NKALAEQGN-INPYTIYTPTC 258
>pdb|4AZ0|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 300
Score = 175 bits (443), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 97/217 (44%), Positives = 135/217 (62%), Gaps = 12/217 (5%)
Query: 32 DRITALPG-QPQVGFQQYSGYVTVDEKKQRALFYYFAEAETDPASKPLVLWLNGGPGCSS 90
D I LPG Q F+QYSGY+ K L Y+F E++ DP + P+VLWLNGGPGCSS
Sbjct: 7 DEIQRLPGLAKQPSFRQYSGYLKGSGSKH--LHYWFVESQKDPENSPVVLWLNGGPGCSS 64
Query: 91 LGVGAFSENGPF--RPNGQVLVRNEYSWNREANMLFLETPIGVGFSYSKDASSYQGVGDK 148
L G +E+GPF +P+G L N YSWN AN+L+LE+P GVGFSYS D + D
Sbjct: 65 LD-GLLTEHGPFLVQPDGVTLEYNPYSWNLIANVLYLESPAGVGFSYSDD--KFYATNDT 121
Query: 149 ITARDNLVFLKNWFLKFPQYRNRSLFITGESYAGHYIPQLADLMLEFNKKEELFNLKGIA 208
A+ N L+++F FP+Y+N LF+TGESYAG YIP LA L+++ + NL+G+A
Sbjct: 122 EVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQ----DPSMNLQGLA 177
Query: 209 LGNPVLEFATDFNSRAEFFWSHGLISDATYTMFTSFC 245
+GN + + + NS F + HGL+ + ++ + C
Sbjct: 178 VGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHC 214
>pdb|1WPX|A Chain A, Crystal Structure Of Carboxypeptidase Y Inhibitor
Complexed With The Cognate Proteinase
pdb|1YSC|A Chain A, 2.8 Angstroms Structure Of Yeast Serine Carboxypeptidase
Length = 421
Score = 148 bits (373), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 132/445 (29%), Positives = 201/445 (45%), Gaps = 81/445 (18%)
Query: 47 QYSGYVTVDEKKQRALFYYFAEAETDPASKPLVLWLNGGPGCSSLGVGAFSENGP----- 101
QY+GY+ V+++ + F+ F E+ DPA P++LWLNGGPGCSSL G F E GP
Sbjct: 16 QYTGYLDVEDEDKHFFFWTF-ESRNDPAKDPVILWLNGGPGCSSL-TGLFFELGPSSIGP 73
Query: 102 -FRPNGQVLVRNEYSWNREANMLFLETPIGVGFSYSKDASSYQGVGDKITA-RDNLVFLK 159
+P G N YSWN A ++FL+ P+ VGFSYS + GV + + A +D FL+
Sbjct: 74 DLKPIG-----NPYSWNSNATVIFLDQPVNVGFSYSGSS----GVSNTVAAGKDVYNFLE 124
Query: 160 NWFLKFPQYRNR--SLFITGESYAGHYIPQLADLMLEFNKKEELFNLKGIALGNPVLEFA 217
+F +FP+Y N+ I GESYAGHYIP A +L + K+ FNL + +GN + +
Sbjct: 125 LFFDQFPEYVNKGQDFHIAGESYAGHYIPVFASEIL--SHKDRNFNLTSVLIGNGLTDPL 182
Query: 218 TDFNSRAEFFWSHG-----LISDATYTMFTSF---------CNYSRYVSEYYRGSVSPIC 263
T +N G L S+ M S C S+ V ++ C
Sbjct: 183 TQYNYYEPMACGEGGEPSVLPSEECSAMEDSLERCLGLIESCYDSQSVWSCVPATI--YC 240
Query: 264 SRVMSLVSRETSRFVDKYDVTLDVCISSVLSQSKVLTPKQXXXXXXXXXXXXXXXNYLNR 323
+ + T R V YD+ D C L + +YLN+
Sbjct: 241 NNAQLAPYQRTGRNV--YDIRKD-CEGGNLCYPTL----------------QDIDDYLNQ 281
Query: 324 KDVQKALHARLVGVRSWAVCSNILDYELL---DLEIPTITIVGKLVKAGIPVMVYSGDQD 380
V++A+ A V + C+ ++ L D P T V L+ +P++VY+GD+D
Sbjct: 282 DYVKEAVGAE---VDHYESCNFDINRNFLFAGDWMKPYHTAVTDLLNQDLPILVYAGDKD 338
Query: 381 SVIPLTGSRKLVNGLAKELKLGTTVPYRVWFEGQQVGGWT-----QVYGNILSFAT---- 431
+ G++ + L + Y F Q+V WT +V G + S+
Sbjct: 339 FICNWLGNKAWTDVLPWK--------YDEEFASQKVRNWTASITDEVAGEVKSYKHFTYL 390
Query: 432 -IRGASHEAPFSQPERSLVLFKAFL 455
+ H PF PE +L + ++
Sbjct: 391 RVFNGGHMVPFDVPENALSMVNEWI 415
>pdb|1CPY|A Chain A, Site-Directed Mutagenesis On (Serine) Carboxypeptidase Y
From Yeast. The Significance Of Thr 60 And Met 398 In
Hydrolysis And Aminolysis Reactions
Length = 421
Score = 143 bits (360), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 128/440 (29%), Positives = 198/440 (45%), Gaps = 71/440 (16%)
Query: 47 QYSGYVTVDEKKQRALFYYFAEAETDPASKPLVLWLNGGPGCSSLGVGAFSENGPFRPNG 106
QY+GY+ V+++ + F+ F E+ DPA P++LWLNGGPGCSSL G F GP
Sbjct: 16 QYTGYLDVEDEDKHFFFWTF-ESRNDPAKDPVILWLNGGPGCSSL-TGLFFALGPSSIGP 73
Query: 107 QVL-VRNEYSWNREANMLFLETPIGVGFSYSKDASSYQGVGDKITA-RDNLVFLKNWFLK 164
+ + N YSWN A ++FL+ P+ VGFSYS + GV + + A +D FL+ +F +
Sbjct: 74 DLKPIGNPYSWNSNATVIFLDQPVNVGFSYSGSS----GVSNTVAAGKDVYNFLELFFDQ 129
Query: 165 FPQYRNR--SLFITGESYAGHYIPQLADLMLEFNKKEELFNLKGIALGNPVLEFATDFNS 222
FP+Y N+ I G SYAGHYIP A +L + K+ FNL + +GN + + T +N
Sbjct: 130 FPEYVNKGQDFHIAGASYAGHYIPVFASEIL--SHKDRNFNLTSVLIGNGLTDPLTQYNY 187
Query: 223 RAEFFWSHG-----LISDATYTMFTSF---------CNYSRYVSEYYRGSVSPICSRVMS 268
G L S+ M S C S+ V ++ C+
Sbjct: 188 YEPMACGEGGEPSVLPSEECSAMEDSLERCLGLIESCYDSQSVWSCVPATI--YCNNAQL 245
Query: 269 LVSRETSRFVDKYDVTLDVCISSVLSQSKVLTPKQXXXXXXXXXXXXXXXNYLNRKDVQK 328
+ T R V YD+ D C L + +YLN+ V++
Sbjct: 246 APYQRTGRNV--YDIRKD-CEGGNLCYPTL----------------QDIDDYLNQDYVKE 286
Query: 329 ALHARLVGVRSWAVCSNILDYELL---DLEIPTITIVGKLVKAGIPVMVYSGDQDSVIPL 385
A+ A V + C+ ++ L D P T V L+ +P++VY+GD+D +
Sbjct: 287 AVGAE---VDHYESCNFDINRNFLFAGDWMKPYHTAVTDLLNQDLPILVYAGDKDFICNW 343
Query: 386 TGSRKLVNGLAKELKLGTTVPYRVWFEGQQVGGWT-----QVYGNILSFAT-----IRGA 435
G++ + L + Y F Q+V WT +V G + S+ +
Sbjct: 344 LGNKAWTDVLPWK--------YDEEFASQKVRNWTASITDEVAGEVKSYKHFTYLRVFNG 395
Query: 436 SHEAPFSQPERSLVLFKAFL 455
H PF PE +L + ++
Sbjct: 396 GHMVPFDVPENALSMVNEWI 415
>pdb|1AC5|A Chain A, Crystal Structure Of Kex1(delta)p, A Prohormone-processing
Carboxypeptidase From Saccharomyces Cerevisiae
Length = 483
Score = 125 bits (314), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 117/469 (24%), Positives = 214/469 (45%), Gaps = 73/469 (15%)
Query: 30 LLDRITALPGQPQVGFQQYSGYV-----TVDEKKQRALFYYFAEAETDPAS----KPLVL 80
LL ++ +P + Q ++G++ DE+ L Y+F + + ++ +PL++
Sbjct: 13 LLPGLSEVPDPSNIP-QMHAGHIPLRSEDADEQDSSDLEYFFWKFTNNDSNGNVDRPLII 71
Query: 81 WLNGGPGCSSLGVGAFSENGPFRPNGQ-VLVRNEYSWNREANMLFLETPIGVGFSYSKDA 139
WLNGGPGCSS+ GA E+GPFR N L NE SW + ++LF++ P G GFS ++
Sbjct: 72 WLNGGPGCSSMD-GALVESGPFRVNSDGKLYLNEGSWISKGDLLFIDQPTGTGFSVEQNK 130
Query: 140 SSYQGVGDKITARDNLV--------FLKNWFLKFPQYRNRSLFITGESYAGHYIPQLADL 191
+G DK ++L FL+N+F FP+ R + ++GESYAG YIP A+
Sbjct: 131 D--EGKIDKNKFDEDLEDVTKHFMDFLENYFKIFPEDLTRKIILSGESYAGQYIPFFANA 188
Query: 192 MLEFNK----KEELFNLKGIALGNPVLEFATDFNSRAEFFWSHGLISDATYTMFTSFCNY 247
+L NK + ++LK + +GN ++ T S F LI D + F N
Sbjct: 189 ILNHNKFSKIDGDTYDLKALLIGNGWIDPNTQSLSYLPFAMEKKLI-DESNPNFKHLTNA 247
Query: 248 SRYVSEYYRGSVSP--------ICSRVMSLV---SRETSR-----FVDKYDVTL-DVCIS 290
+ + C +++L+ +RE+S+ ++ Y+ L D S
Sbjct: 248 HENCQNLINSASTDEAAHFSYQECENILNLLLSYTRESSQKGTADCLNMYNFNLKDSYPS 307
Query: 291 SVLSQSKVLTPKQXXXXXXXXXXXXXXXNYLNRKDVQKALHARLVGVRSWAVCSNILDYE 350
++ K ++ + + V +LH + W C+N + +
Sbjct: 308 CGMNWPKDIS---------------FVSKFFSTPGVIDSLHLDSDKIDHWKECTNSVGTK 352
Query: 351 LLD-LEIPTITIVGKLVKAGIPVMVYSGDQDSVIPLTGSRKLVNGLA---------KELK 400
L + + P+I ++ L+++GI +++++GD+D + G ++ L +
Sbjct: 353 LSNPISKPSIHLLPGLLESGIEIVLFNGDKDLICNNKGVLDTIDNLKWGGIKGFSDDAVS 412
Query: 401 LGTTVPYRVWFEGQQVGGWTQVYGNILSFATIRGASHEAPFSQPERSLV 449
+ + ++ G+ + Y L+F ++ ASH PF ++SLV
Sbjct: 413 FDWIHKSKSTDDSEEFSGYVK-YDRNLTFVSVYNASHMVPF---DKSLV 457
>pdb|1BCR|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 160
Score = 122 bits (306), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 59/144 (40%), Positives = 89/144 (61%), Gaps = 7/144 (4%)
Query: 320 YLNRKDVQKALHARLVGVR--SWAVCSNILDYELLDLEIPTITIVGKLVKAGIPVMVYSG 377
Y NR+DVQ ALHA + G +WA CS+ ++ D + I +L+ AG+ + V+SG
Sbjct: 15 YYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELIAAGLRIWVFSG 74
Query: 378 DQDSVIPLTGSRKLVNGLAKELKLGTTVPYRVWFEGQQVGGWTQVYGNILSFATIRGASH 437
D D+V+PLT +R + L L TT + W++ Q+VGGW+QVY L+ ++RGA H
Sbjct: 75 DTDAVVPLTATRYSIGALG----LPTTTSWYPWYDDQEVGGWSQVYKG-LTLVSVRGAGH 129
Query: 438 EAPFSQPERSLVLFKAFLDSRPLP 461
E P +P ++LVLF+ FL +P+P
Sbjct: 130 EVPLHRPRQALVLFQYFLQGKPMP 153
>pdb|3SC2|B Chain B, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 152
Score = 121 bits (304), Expect = 7e-28, Method: Composition-based stats.
Identities = 59/144 (40%), Positives = 89/144 (61%), Gaps = 7/144 (4%)
Query: 320 YLNRKDVQKALHARLVGVR--SWAVCSNILDYELLDLEIPTITIVGKLVKAGIPVMVYSG 377
Y NR+DVQ ALHA + G +WA CS+ ++ D + I +L+ AG+ + V+SG
Sbjct: 13 YYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELIAAGLRIWVFSG 72
Query: 378 DQDSVIPLTGSRKLVNGLAKELKLGTTVPYRVWFEGQQVGGWTQVYGNILSFATIRGASH 437
D D+V+PLT +R + L L TT + W++ Q+VGGW+QVY L+ ++RGA H
Sbjct: 73 DTDAVVPLTATRYSIGALG----LPTTTSWYPWYDDQEVGGWSQVYKG-LTLVSVRGAGH 127
Query: 438 EAPFSQPERSLVLFKAFLDSRPLP 461
E P +P ++LVLF+ FL +P+P
Sbjct: 128 EVPLHRPRQALVLFQYFLQGKPMP 151
>pdb|1WHS|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 121 bits (304), Expect = 7e-28, Method: Composition-based stats.
Identities = 59/144 (40%), Positives = 89/144 (61%), Gaps = 7/144 (4%)
Query: 320 YLNRKDVQKALHARLVGVR--SWAVCSNILDYELLDLEIPTITIVGKLVKAGIPVMVYSG 377
Y NR+DVQ ALHA + G +WA CS+ ++ D + I +L+ AG+ + V+SG
Sbjct: 13 YYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELIAAGLRIWVFSG 72
Query: 378 DQDSVIPLTGSRKLVNGLAKELKLGTTVPYRVWFEGQQVGGWTQVYGNILSFATIRGASH 437
D D+V+PLT +R + L L TT + W++ Q+VGGW+QVY L+ ++RGA H
Sbjct: 73 DTDAVVPLTATRYSIGALG----LPTTTSWYPWYDDQEVGGWSQVYKG-LTLVSVRGAGH 127
Query: 438 EAPFSQPERSLVLFKAFLDSRPLP 461
E P +P ++LVLF+ FL +P+P
Sbjct: 128 EVPLHRPRQALVLFQYFLQGKPMP 151
>pdb|1WHT|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 121 bits (304), Expect = 7e-28, Method: Composition-based stats.
Identities = 59/144 (40%), Positives = 89/144 (61%), Gaps = 7/144 (4%)
Query: 320 YLNRKDVQKALHARLVGVR--SWAVCSNILDYELLDLEIPTITIVGKLVKAGIPVMVYSG 377
Y NR+DVQ ALHA + G +WA CS+ ++ D + I +L+ AG+ + V+SG
Sbjct: 13 YYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELIAAGLRIWVFSG 72
Query: 378 DQDSVIPLTGSRKLVNGLAKELKLGTTVPYRVWFEGQQVGGWTQVYGNILSFATIRGASH 437
D D+V+PLT +R + L L TT + W++ Q+VGGW+QVY L+ ++RGA H
Sbjct: 73 DTDAVVPLTATRYSIGALG----LPTTTSWYPWYDDQEVGGWSQVYKG-LTLVSVRGAGH 127
Query: 438 EAPFSQPERSLVLFKAFLDSRPLP 461
E P +P ++LVLF+ FL +P+P
Sbjct: 128 EVPLHRPRQALVLFQYFLQGKPMP 151
>pdb|1GXS|B Chain B, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|D Chain D, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 158
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 87/146 (59%), Gaps = 6/146 (4%)
Query: 319 NYLNRKDVQKALHARLVGV--RSWAVCSNILDYELLDLEIPTITIVGKLVKAGIPVMVYS 376
NYLN +VQ ALHA + G+ W VCSN + + + + +L++AG+ V VYS
Sbjct: 14 NYLNLPEVQTALHANVSGIVEYPWTVCSNTIFDQWGQAADDLLPVYRELIQAGLRVWVYS 73
Query: 377 GDQDSVIPLTGSRKLVNGLAKELKLGTT-VPYRVWFEGQQVGGWTQVYGNILSFATIRGA 435
GD DSV+P++ +R+ + L EL + T+ P+ + ++VGGW+ Y L++ T+RGA
Sbjct: 74 GDTDSVVPVSSTRRSLAAL--ELPVKTSWYPWYMAPTEREVGGWSVQYEG-LTYVTVRGA 130
Query: 436 SHEAPFSQPERSLVLFKAFLDSRPLP 461
H P +P ++ +LFK FL P+P
Sbjct: 131 GHLVPVHRPAQAFLLFKQFLKGEPMP 156
>pdb|4AZ0|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 155
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 72/146 (49%), Gaps = 12/146 (8%)
Query: 320 YLNRKDVQKALHARLVGVRSWAVCSNILDYELLDLEIPTITIVGKLVKA-GIPVMVYSGD 378
YLN V+KAL+ + W +C+ +++ + L + KL+ + +++Y+GD
Sbjct: 14 YLNNPYVRKALNIP-EQLPQWDMCNFLVNLQYRRLYRSMNSQYLKLLSSQKYQILLYNGD 72
Query: 379 QDSVIPLTGSRKLVNGLAKELKLGTTVPYRVWF-----EGQQVGGWTQVYGNILSFATIR 433
D G V+ L ++++ V R W G+Q+ G+ + + +I +F TI+
Sbjct: 73 VDMACNFMGDEWFVDSLNQKME----VQRRPWLVKYGDSGEQIAGFVKEFSHI-AFLTIK 127
Query: 434 GASHEAPFSQPERSLVLFKAFLDSRP 459
GA H P +P + +F FL+ +P
Sbjct: 128 GAGHMVPTDKPLAAFTMFSRFLNKQP 153
>pdb|3DOH|A Chain A, Crystal Structure Of A Thermostable Esterase
pdb|3DOH|B Chain B, Crystal Structure Of A Thermostable Esterase
pdb|3DOI|A Chain A, Crystal Structure Of A Thermostable Esterase Complex With
Paraoxon
pdb|3DOI|B Chain B, Crystal Structure Of A Thermostable Esterase Complex With
Paraoxon
Length = 380
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 10/63 (15%)
Query: 370 IPVMVYSGDQDSVIPLTGSRKLVNGLAKELKLGTTVPYRVWFEG-------QQVGGWTQV 422
IP+ V+ + D V+P+ SR LV LA ++G V Y + +G G W
Sbjct: 309 IPIWVFHAEDDPVVPVENSRVLVKKLA---EIGGKVRYTEYEKGFMEKHGWDPHGSWIPT 365
Query: 423 YGN 425
Y N
Sbjct: 366 YEN 368
>pdb|1UJN|A Chain A, Crystal Structure Of Dehydroquinate Synthase From Thermus
Thermophilus Hb8
pdb|1UJN|B Chain B, Crystal Structure Of Dehydroquinate Synthase From Thermus
Thermophilus Hb8
Length = 348
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 371 PVMVYSGDQDSVIPLTGSRKL-----VNGLAKELKLGTTVPYRVWFEGQQVGGWTQVYGN 425
P++V G V PL G L V G A+E+ V + + G + +VYG
Sbjct: 13 PILVGEGVLKEVPPLAGPAALLFDRRVEGFAQEVAKALGVRHLLGLPGGEAAKSLEVYGK 72
Query: 426 ILSFATIRGASHEA 439
+LS+ +G A
Sbjct: 73 VLSWLAEKGLPRNA 86
>pdb|3NVQ|A Chain A, Molecular Mechanism Of Guidance Cue Recognition
pdb|3NVQ|E Chain E, Molecular Mechanism Of Guidance Cue Recognition
Length = 590
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 419 WTQVYGNILSFATIRGASHEAPFSQPERSLVLFKA 453
W V G ++ +RG APFS E SLVLF+
Sbjct: 109 WNLVNGTVVPLGEMRGY---APFSPDENSLVLFEG 140
>pdb|4DGQ|A Chain A, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
pdb|4DGQ|B Chain B, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
pdb|4DGQ|C Chain C, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
Length = 280
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 17/32 (53%)
Query: 370 IPVMVYSGDQDSVIPLTGSRKLVNGLAKELKL 401
IPV+V GD D V+P S L L K KL
Sbjct: 221 IPVLVIHGDDDQVVPYADSGVLSAKLVKNGKL 252
>pdb|1VA4|A Chain A, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|B Chain B, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|C Chain C, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|D Chain D, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|E Chain E, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|F Chain F, Pseudomonas Fluorescens Aryl Esterase
Length = 279
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 365 LVKAGIPVMVYSGDQDSVIPLTGSRKLVNGLAK--ELKLGTTVPY 407
+ K +P +V GD D ++P + K+ L K ELK+ P+
Sbjct: 207 MAKIDVPTLVIHGDGDQIVPFETTGKVAAELIKGAELKVYKDAPH 251
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,592,365
Number of Sequences: 62578
Number of extensions: 571884
Number of successful extensions: 1232
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1165
Number of HSP's gapped (non-prelim): 26
length of query: 464
length of database: 14,973,337
effective HSP length: 102
effective length of query: 362
effective length of database: 8,590,381
effective search space: 3109717922
effective search space used: 3109717922
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)