BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012397
(464 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1LI5|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase
pdb|1LI5|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase
pdb|1LI7|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase With
Cysteine Substrate Bound
pdb|1LI7|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase With
Cysteine Substrate Bound
pdb|1U0B|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase Binary
Complex With Trnacys
Length = 461
Score = 364 bits (934), Expect = e-101, Method: Compositional matrix adjust.
Identities = 179/350 (51%), Positives = 229/350 (65%), Gaps = 1/350 (0%)
Query: 19 LKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
LKI+N++T+QKE F PI G+VGMYVCG+T YDL H+GH R V+FD++ RYL L ++
Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKL 61
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
YVRN TD+DDKII+RAN+ GE+ +++ +R E D L L P +PR + H+ +I
Sbjct: 62 KYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHKDFDALNILRPDMEPRATHHIAEI 121
Query: 139 KDMITQIINNDCAYVVE-GDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADF 197
++ Q+I AYV + GDV F V P YG LS Q L+ +AG RV V KRNP DF
Sbjct: 122 IELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVDDKRNPMDF 181
Query: 198 ALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257
LWK +K GEPSW SPWG GRPGWHIECSAM+ L + FDIHGGG DL+FPHHENEIAQ
Sbjct: 182 VLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENEIAQ 241
Query: 258 SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSP 317
S A V+YWMH+G V + EKMSKSLGNFFT+R + + Y +R+FL+S HYRS
Sbjct: 242 STCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHYRSQ 301
Query: 318 LNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCIN 367
LNYS L A A+ +Y L+ + ++P AR A +D N
Sbjct: 302 LNYSEENLKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEAMDDDFN 351
>pdb|3TQO|A Chain A, Structure Of The Cysteinyl-Trna Synthetase (Cyss) From
Coxiella Burnetii
Length = 462
Score = 340 bits (871), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 171/367 (46%), Positives = 226/367 (61%), Gaps = 17/367 (4%)
Query: 18 TLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCE 77
++KI+NS+T+QKE+F PI GKV +YVCG T YD H+GH R+ + FD + RYL E
Sbjct: 4 SVKIFNSLTKQKEIFKPIESGKVKLYVCGXTVYDYXHIGHGRSWIIFDXVVRYLRXRGYE 63
Query: 78 VTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQ 137
VT+VRN TD+DDKII+RA + E+P +L+ R+ Q D L+ L P +PR + ++ +
Sbjct: 64 VTFVRNITDIDDKIIKRAGENKESPAALAERFIQILHEDEKALRVLSPDQEPRATQYVPE 123
Query: 138 IKDMITQIINNDCAYVVE-GDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPAD 196
I +I ++++N AY + GDVFF V + +YG+LS + L+ +AG RV V KR+P D
Sbjct: 124 IIKLIQKLLDNQYAYTGQNGDVFFDVRRFKDYGKLSHRHLDELQAGARVEVSDSKRDPLD 183
Query: 197 FALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIA 256
F LWK AK GEP WDSPWG GRPGWHIECSA S+ L FDIHGGG+DL FPHHENEIA
Sbjct: 184 FVLWKKAKPGEPKWDSPWGEGRPGWHIECSAXSSSILGQPFDIHGGGLDLKFPHHENEIA 243
Query: 257 QSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRS 316
QS A + V W H G + N EK SKSLGN +IR+ + LR+FL+S HYR+
Sbjct: 244 QSEAGEEKPFVKLWXHAGLLEINKEKXSKSLGNIISIREALKESDVEVLRYFLLSGHYRN 303
Query: 317 PLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHAR 376
PL+YS L++ A+ Y L+ P H KT+ D F+
Sbjct: 304 PLSYSKENLENGRLALERFYLALRGL-----PVVNHEKTSSYT-----------DRFYEA 347
Query: 377 MSDDLNT 383
DD NT
Sbjct: 348 XDDDFNT 354
>pdb|3C8Z|A Chain A, The 1.6 A Crystal Structure Of Mshc: The Rate Limiting
Enzyme In The Mycothiol Biosynthetic Pathway
pdb|3C8Z|B Chain B, The 1.6 A Crystal Structure Of Mshc: The Rate Limiting
Enzyme In The Mycothiol Biosynthetic Pathway
Length = 414
Score = 207 bits (526), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 136/410 (33%), Positives = 205/410 (50%), Gaps = 34/410 (8%)
Query: 1 MEASKETGTVAAPKMDLTLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARA 60
M++ P L++++S +Q TP MYVCG+T YD +HLGHA
Sbjct: 3 MQSWSAPAIPVVPGRGPALRLFDSADRQVRPVTPGPTAT--MYVCGITPYDATHLGHAAT 60
Query: 61 AVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADL 120
++FDL++R V YV+N TDVDD + RA G + +L +R Q + DMA L
Sbjct: 61 YLTFDLVHRLWLDAGHTVQYVQNVTDVDDPLFERAERDGIDWRTLGDRETQLFREDMAAL 120
Query: 121 QCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEG----DVFFAVEKSPNYGRLSGQRL 176
+ LPP +D + ++ +M+ +++ + AY+VE DV+F + + +G SG
Sbjct: 121 RVLPPHDYVAATDAIAEVVEMVEKLLASGAAYIVEDAEYPDVYFRADATAQFGYESGYDR 180
Query: 177 ENNRA--GERVAVDSR--KRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHY 232
+ ER R K + D LW+A + GEPSW SP+G GRPGWH+ECSA++
Sbjct: 181 DTMLTLFAERGGDPDRPGKSDQLDALLWRAERPGEPSWPSPFGRGRPGWHVECSAIALTR 240
Query: 233 LSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVS-YWMHNGHVTNNNEKMSKSLGNFF 291
+ + DI GGG DLIFPHHE A + + + + +++H G + + KMSKS GN
Sbjct: 241 IGTGLDIQGGGSDLIFPHHEYSAAHAESVTGERRFARHYVHTGMIGWDGHKMSKSRGNLV 300
Query: 292 TIRQI-TERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQ 350
+ Q+ + P A+R L S HYR +S LD A +A +++ A
Sbjct: 301 LVSQLRAQGVDPSAIRLGLFSGHYREDRFWSNEVLDEA-NARLARWRSATALPEA----- 354
Query: 351 EHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILT---GAFQDALKF 397
P A D I ++R ++DDL+T L G DAL +
Sbjct: 355 ---------PDATDVIARVRQ----YLADDLDTPKALAALDGWCTDALSY 391
>pdb|3SP1|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase (Cyss) From
Borrelia Burgdorferi
pdb|3SP1|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase (Cyss) From
Borrelia Burgdorferi
Length = 501
Score = 180 bits (457), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 115/386 (29%), Positives = 181/386 (46%), Gaps = 17/386 (4%)
Query: 17 LTLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKC 76
+ LK+YN+ T+ T KV Y CG T Y+ +H+G+ R + DLL + L L
Sbjct: 22 MILKLYNTRTKDFSELTNFENVKV--YACGPTVYNYAHIGNFRTYIFGDLLIKTLRFLGY 79
Query: 77 EVTYVRNFTDV----------DDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPT 126
+V Y N TD+ +DK+ + A + G +S + + + D L + P
Sbjct: 80 KVNYAMNITDIGHLTGDLDDGEDKVAKTAREKGLTVYEISEFFTEAFFNDCRKLNIVYPD 139
Query: 127 YQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRL-ENNRAGERV 185
S H+ + +++ + Y G+V+F +YG ++G L + + RV
Sbjct: 140 KVLVASKHIPIMIEVVKILEEKKITYFSNGNVYFDTSCFKSYGEMAGIDLIDKDMTLPRV 199
Query: 186 AVDSRKRNPADFALW---KAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGG 242
VD KRN DF LW K E WDSPWG G P WH+EC+AM+ Y DIH G
Sbjct: 200 DVDKFKRNKTDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFKDALDIHLG 259
Query: 243 GIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITER-YH 301
G+D I HH NEIA + ++H + + KMSKS GNF T++ + ++ +
Sbjct: 260 GVDHIGVHHINEIAIAECFLNKKWCDVFVHGEFLIMDYNKMSKSRGNFITVKDLEDQNFS 319
Query: 302 PLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPA 361
PL R+ +++HYR+ L +S+ L ++ A + L +L P + +
Sbjct: 320 PLDFRYLCLTSHYRNQLKFSLDNLQASKIARENLINKLSYFYESLDPVDLNTLNKDLKNF 379
Query: 362 AEDCINKLRDEFHARMSDDLNTSHIL 387
+ D F ++S DLN + L
Sbjct: 380 GFSVEKEYYDSFVEKISFDLNVAQGL 405
>pdb|4DLP|A Chain A, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
pdb|4DLP|B Chain B, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
pdb|4DLP|C Chain C, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
Length = 536
Score = 35.8 bits (81), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 273 NGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLI 310
+G + N EKMSKS+GN ++ ERY LR+FL+
Sbjct: 312 HGFLFNRGEKMSKSVGNVIDPFELVERYGLDQLRYFLM 349
>pdb|2CSX|A Chain A, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met)
pdb|2CSX|B Chain B, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met)
pdb|2CT8|A Chain A, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met) And
Methionyl-Adenylate Anologue
pdb|2CT8|B Chain B, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met) And
Methionyl-Adenylate Anologue
Length = 497
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 33/63 (52%)
Query: 51 DLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYC 110
D+ HLGHA ++ D + RY +V ++ + KI ++A +LG +P L +R
Sbjct: 18 DVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEELGISPKELVDRNA 77
Query: 111 QEY 113
+ +
Sbjct: 78 ERF 80
>pdb|3L4G|B Chain B, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|D Chain D, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|F Chain F, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|H Chain H, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|J Chain J, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|L Chain L, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|N Chain N, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|P Chain P, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
Length = 589
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/105 (20%), Positives = 50/105 (47%), Gaps = 8/105 (7%)
Query: 228 MSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSL 287
++ YL S+ G I++ P +I +C +D+ ++Y +N +T + ++
Sbjct: 331 LTRMYLKSEVIGDGNQIEIEIPPTRADIIHACDIVEDAAIAYGYNNIQMTLPK---TYTI 387
Query: 288 GNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAV 332
N F + ++TE LRH + +A + L +++ + +D +
Sbjct: 388 ANQFPLNKLTE-----LLRHDMAAAGFTEALTFALCSQEDIADKL 427
>pdb|4HNT|A Chain A, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|B Chain B, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|C Chain C, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|D Chain D, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 14/121 (11%)
Query: 51 DLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYC 110
D H + A SF Y+E Y+ N ++ ++I D N + L R C
Sbjct: 205 DAFHRAKSEAEKSFGNSEVYIER------YIDNPKHIEVQVI---GDEHGNIVHLFERDC 255
Query: 111 -----QEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS 165
+ +V++A L PT + R+ D Q+ + I + ++V GD FF +E +
Sbjct: 256 SVQRRHQKVVEVAPSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLVSGDEFFFIEVN 315
Query: 166 P 166
P
Sbjct: 316 P 316
>pdb|4HNV|A Chain A, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|B Chain B, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|C Chain C, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|D Chain D, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 14/121 (11%)
Query: 51 DLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYC 110
D H + A SF Y+E Y+ N ++ ++I D N + L R C
Sbjct: 205 DAFHRAKSEAEKSFGNSEVYIER------YIDNPKHIEVQVI---GDEHGNIVHLFERDC 255
Query: 111 -----QEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS 165
+ +V++A L PT + R+ D Q+ + I + ++V GD FF +E +
Sbjct: 256 SVQRRHQKVVEVAPSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLVSGDEFFFIEVN 315
Query: 166 P 166
P
Sbjct: 316 P 316
>pdb|4HNU|A Chain A, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|B Chain B, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|C Chain C, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|D Chain D, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 14/121 (11%)
Query: 51 DLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYC 110
D H + A SF Y+E Y+ N ++ ++I D N + L R C
Sbjct: 205 DAFHRAKSEAEKSFGNSEVYIER------YIDNPKHIEVQVI---GDEHGNIVHLFERDC 255
Query: 111 -----QEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS 165
+ +V++A L PT + R+ D Q+ + I + ++V GD FF +E +
Sbjct: 256 SVQRRHQKVVEVAPSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLVSGDEFFFIEVN 315
Query: 166 P 166
P
Sbjct: 316 P 316
>pdb|3BG5|A Chain A, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|B Chain B, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|C Chain C, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|D Chain D, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
Length = 1173
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 14/121 (11%)
Query: 51 DLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYC 110
D H + A SF Y+E Y+ N ++ ++I D N + L R C
Sbjct: 205 DAFHRAKSEAEKSFGNSEVYIER------YIDNPKHIEVQVI---GDEHGNIVHLFERDC 255
Query: 111 -----QEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS 165
+ +V++A L PT + R+ D Q+ + I + ++V GD FF +E +
Sbjct: 256 SVQRRHQKVVEVAPSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLVSGDEFFFIEVN 315
Query: 166 P 166
P
Sbjct: 316 P 316
>pdb|3HB9|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
Length = 1150
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 14/121 (11%)
Query: 51 DLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYC 110
D H + A SF Y+E Y+ N ++ ++I D N + L R C
Sbjct: 182 DAFHRAKSEAEKSFGNSEVYIER------YIDNPKHIEVQVI---GDEHGNIVHLFERDC 232
Query: 111 -----QEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS 165
+ +V++A L PT + R+ D Q+ + I + ++V GD FF +E +
Sbjct: 233 SVQRRHQKVVEVAPSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLVSGDEFFFIEVN 292
Query: 166 P 166
P
Sbjct: 293 P 293
>pdb|1QQT|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli
Length = 551
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 36/93 (38%), Gaps = 8/93 (8%)
Query: 54 HLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDK----IIRRANDLGENPLSLSNRY 109
HLGH + D+ RY EV NF DD I+ +A LG P +
Sbjct: 21 HLGHMLEHIQADVWVRYQRMRGHEV----NFICADDAHGTPIMLKAQQLGITPEQMIGEM 76
Query: 110 CQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMI 142
QE+ D A Y S+ Q+ ++I
Sbjct: 77 SQEHQTDFAGFNISYDNYHSTHSEENRQLSELI 109
>pdb|3H97|A Chain A, Structure Of A Mutant Methionyl-trna Synthetase With
Modified Specificity
pdb|3H99|A Chain A, Structure Of A Mutant Methionyl-Trna Synthetase With
Modified Specificity Complexed With Methionine
pdb|3H9B|A Chain A, Structure Of A Mutant Methionyl-Trna Synthetase With
Modified Specificity Complexed With Azidonorleucine
Length = 560
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 36/93 (38%), Gaps = 8/93 (8%)
Query: 54 HLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDK----IIRRANDLGENPLSLSNRY 109
HLGH + D+ RY EV NF DD I+ +A LG P +
Sbjct: 34 HLGHMLEHIQADVWVRYQRMRGHEV----NFICADDAHGTPIMLKAQQLGITPEQMIGEM 89
Query: 110 CQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMI 142
QE+ D A Y S+ Q+ ++I
Sbjct: 90 SQEHQTDFAGFNISYDNYHSTHSEENRQLSELI 122
>pdb|3HBL|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
Length = 1150
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 14/121 (11%)
Query: 51 DLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYC 110
D H + A SF Y+E Y+ N ++ ++I D N + L R C
Sbjct: 182 DAFHRAKSEAEKSFGNSEVYIER------YIDNPKHIEVQVI---GDEHGNIVHLFERDC 232
Query: 111 -----QEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS 165
+ +V++A L PT + R+ D Q+ + I + ++V GD FF +E +
Sbjct: 233 SVQRRHQKVVEVAPSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLVSGDEFFFIEVN 292
Query: 166 P 166
P
Sbjct: 293 P 293
>pdb|3HO8|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
Length = 1150
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 14/121 (11%)
Query: 51 DLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYC 110
D H + A SF Y+E Y+ N ++ ++I D N + L R C
Sbjct: 182 DAFHRAKSEAEKSFGNSEVYIER------YIDNPKHIEVQVI---GDEHGNIVHLFERDC 232
Query: 111 -----QEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS 165
+ +V++A L PT + R+ D Q+ + I + ++V GD FF +E +
Sbjct: 233 SVQRRHQKVVEVAPSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLVSGDEFFFIEVN 292
Query: 166 P 166
P
Sbjct: 293 P 293
>pdb|1P7P|A Chain A, Methionyl-trna Synthetase From Escherichia Coli Complexed
With Methionine Phosphonate
pdb|1PFU|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionine Phosphinate
pdb|1PFV|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Difluoromethionine
pdb|1PFW|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Trifluoromethionine
pdb|1PFY|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionyl Sulphamoyl Adenosine
pdb|1PG0|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methioninyl Adenylate
pdb|1PG2|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionine And Adenosine
Length = 551
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 36/93 (38%), Gaps = 8/93 (8%)
Query: 54 HLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDK----IIRRANDLGENPLSLSNRY 109
HLGH + D+ RY EV NF DD I+ +A LG P +
Sbjct: 21 HLGHMLEHIQADVWVRYQRMRGHEV----NFICADDAHGTPIMLKAQQLGITPEQMIGEM 76
Query: 110 CQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMI 142
QE+ D A Y S+ Q+ ++I
Sbjct: 77 SQEHQTDFAGFNISYDNYHSTHSEENRQLSELI 109
>pdb|1F4L|A Chain A, Crystal Structure Of The E.Coli Methionyl-Trna Synthetase
Complexed With Methionine
Length = 551
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 36/93 (38%), Gaps = 8/93 (8%)
Query: 54 HLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDK----IIRRANDLGENPLSLSNRY 109
HLGH + D+ RY EV NF DD I+ +A LG P +
Sbjct: 22 HLGHMLEHIQADVWVRYQRMRGHEV----NFICADDAHGTPIMLKAQQLGITPEQMIGEM 77
Query: 110 CQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMI 142
QE+ D A Y S+ Q+ ++I
Sbjct: 78 SQEHQTDFAGFNISYDNYHSTHSEENRQLSELI 110
>pdb|3H9C|A Chain A, Structure Of Methionyl-Trna Synthetase: Crystal Form 2
Length = 547
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 36/93 (38%), Gaps = 8/93 (8%)
Query: 54 HLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDK----IIRRANDLGENPLSLSNRY 109
HLGH + D+ RY EV NF DD I+ +A LG P +
Sbjct: 21 HLGHMLEHIQADVWVRYQRMRGHEV----NFICADDAHGTPIMLKAQQLGITPEQMIGEM 76
Query: 110 CQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMI 142
QE+ D A Y S+ Q+ ++I
Sbjct: 77 SQEHQTDFAGFNISYDNYHSTHSEENRQLSELI 109
>pdb|3FNR|A Chain A, Crystal Structure Of Putative Arginyl T-Rna Synthetase
From Campylobacter Jejuni
Length = 464
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 282 KMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSV--LQLDSASDAVFYI 335
KMSK GNF + + + ALR+ +S + L + + LQ + +S+ V+YI
Sbjct: 285 KMSKRAGNFILMSDVVDEIGSDALRYIFLSKKCDTHLEFDISDLQKEDSSNPVYYI 340
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 9/74 (12%)
Query: 54 HLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIR---------RANDLGENPLS 104
H+GHAR AV D L R HL + D ++I + + L EN
Sbjct: 46 HIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDAGNQIYLLGLSILLSVKESILHENVEY 105
Query: 105 LSNRYCQEYLVDMA 118
Y EY+VD+A
Sbjct: 106 PEQYYKGEYIVDLA 119
>pdb|1GAX|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1GAX|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IYW|A Chain A, Preliminary Structure Of Thermus Thermophilus Ligand-Free
Valyl-Trna Synthetase
pdb|1IYW|B Chain B, Preliminary Structure Of Thermus Thermophilus Ligand-Free
Valyl-Trna Synthetase
Length = 862
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 4/92 (4%)
Query: 220 GWHIECSAMSAHYLSSKFDIHGGGIDLIFPH-HENEIAQSCAACQDSNVSYWMHNGHVTN 278
GW E + A Y D+ G D++F E++ + + +H +
Sbjct: 468 GWPEETEDLKAFYPG---DVLVTGYDILFLWVSRMEVSGYHFMGERPFKTVLLHGLVLDE 524
Query: 279 NNEKMSKSLGNFFTIRQITERYHPLALRHFLI 310
+KMSKS GN ++ ERY ALR LI
Sbjct: 525 KGQKMSKSKGNVIDPLEMVERYGADALRFALI 556
>pdb|1EL4|A Chain A, Structure Of The Calcium-Regulated Photoprotein Obelin
Determined By Sulfur Sas
Length = 195
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 329 SDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLR 370
DAVF I+ + L ++ +GK + I+P+ EDC R
Sbjct: 115 GDAVFDIFDKDGSGTITLDEWKAYGKISGISPSQEDCEATFR 156
>pdb|1QV0|A Chain A, Atomic Resolution Structure Of Obelin From Obelia
Longissima
pdb|1QV1|A Chain A, Atomic Resolution Structure Of Obelin From Obelia
Longissima
pdb|1SL9|A Chain A, Obelin From Obelia Longissima
Length = 195
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 329 SDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLR 370
DAVF I+ + L ++ +GK + I+P+ EDC R
Sbjct: 115 GDAVFDIFDKDGSGTITLDEWKAYGKISGISPSQEDCEATFR 156
>pdb|2F8P|A Chain A, Crystal Structure Of Obelin Following Ca2+ Triggered
Bioluminescence Suggests Neutral Coelenteramide As The
Primary Excited State
Length = 195
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 329 SDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLR 370
DAVF I+ + L ++ +GK + I+P+ EDC R
Sbjct: 115 GDAVFDIFDKDGSGTITLDEWKAYGKISGISPSQEDCEATFR 156
>pdb|1SL7|A Chain A, Crystal Structure Of Calcium-Loaded Apo-Obelin From Obelia
Longissima
Length = 195
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 329 SDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLR 370
DAVF I+ + L ++ +GK + I+P+ EDC R
Sbjct: 115 GDAVFDIFDKDGSGTITLDEWKAYGKISGISPSQEDCEATFR 156
>pdb|1JF2|A Chain A, Crystal Structure Of W92f Obelin Mutant From Obelia
Longissima At 1.72 Angstrom Resolution
pdb|1S36|A Chain A, Crystal Structure Of A Ca2+-Discharged Photoprotein:
Implications For The Mechanisms Of The Calcium Trigger
And The Bioluminescence
Length = 195
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 329 SDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLR 370
DAVF I+ + L ++ +GK + I+P+ EDC R
Sbjct: 115 GDAVFDIFDKDGSGTITLDEWKAYGKISGISPSQEDCEATFR 156
>pdb|4EG5|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1312
pdb|4EG5|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1312
Length = 542
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 273 NGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLI 310
+G T + +K+SKSLGN F + E + AL++FL+
Sbjct: 314 HGWWTKDRKKISKSLGNVFDPVEKAEEFGYDALKYFLL 351
>pdb|4EG1|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Substrate Methionine
pdb|4EG1|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Substrate Methionine
pdb|4EG3|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Product Methionyl-Adenylate
pdb|4EG3|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Product Methionyl-Adenylate
pdb|4EG6|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1325
pdb|4EG6|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1325
pdb|4EG8|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Compound Chem 89
pdb|4EG8|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Compound Chem 89
pdb|3U1E|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1387
pdb|3U1E|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1387
pdb|3U1F|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1392
pdb|3U1F|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1392
pdb|3U1G|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1415
pdb|3U1G|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1415
pdb|3U20|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1444
pdb|3U20|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1444
Length = 542
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 273 NGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLI 310
+G T + +K+SKSLGN F + E + AL++FL+
Sbjct: 314 HGWWTKDRKKISKSLGNVFDPVEKAEEFGYDALKYFLL 351
>pdb|3TUN|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1356
pdb|3TUN|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1356
pdb|4EG4|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1289
pdb|4EG4|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1289
pdb|4EG7|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1331
pdb|4EG7|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1331
pdb|4EGA|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1320
pdb|4EGA|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1320
pdb|3U1Z|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1433
pdb|3U1Z|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1433
Length = 542
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 273 NGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLI 310
+G T + +K+SKSLGN F + E + AL++FL+
Sbjct: 314 HGWWTKDRKKISKSLGNVFDPVEKAEEFGYDALKYFLL 351
>pdb|2ZUE|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Arginyl-Trna
Synthetase Complexed With Trna(Arg) And An Atp Analog
(Anp)
pdb|2ZUF|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Arginyl-Trna
Synthetase Complexed With Trna(Arg)
Length = 629
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 54 HLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTD 86
H+GHAR A+ D++ R L L EV V+N+ D
Sbjct: 135 HMGHARNAILGDVMARILRFLGYEVE-VQNYID 166
>pdb|1QU2|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1QU3|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1FFY|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
Length = 917
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 46/109 (42%), Gaps = 1/109 (0%)
Query: 233 LSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNN-NEKMSKSLGNFF 291
LS D++ G D + I S A S + + +G V + +KMSKSLGN
Sbjct: 545 LSFPADMYLEGSDQYRGWFNSSITTSVATRGVSPYKFLLSHGFVMDGEGKKMSKSLGNVI 604
Query: 292 TIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQ 340
Q+ ++ R ++ S Y + + S L SD I TL+
Sbjct: 605 VPDQVVKQKGADIARLWVSSTDYLADVRISDEILKQTSDDYRKIRNTLR 653
>pdb|1KNV|A Chain A, Bse634i Restriction Endonuclease
pdb|1KNV|B Chain B, Bse634i Restriction Endonuclease
Length = 293
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 29/44 (65%), Gaps = 3/44 (6%)
Query: 416 SLIESLRKIENEVKEVLRILGLLPP--GAYSEVK-TAFLVLLHV 456
S+ E+L K+EN VK+V++ GL P GA+S + T F V++ +
Sbjct: 42 SIKENLDKLENYVKDVVKAKGLAIPTSGAFSNTRGTWFEVMIAI 85
>pdb|3V1Z|A Chain A, Crystal Structure Of Type Iif Restriction Endonuclease
Bse634i With Cognate Dna
pdb|3V1Z|B Chain B, Crystal Structure Of Type Iif Restriction Endonuclease
Bse634i With Cognate Dna
pdb|3V20|A Chain A, Crystal Structure Of Type Iif Restriction Endonuclease
Bse634i With Cognate Dna
pdb|3V20|B Chain B, Crystal Structure Of Type Iif Restriction Endonuclease
Bse634i With Cognate Dna
pdb|3V21|A Chain A, Crystal Structure Of Type Iif Restriction Endonuclease
Bse634i With Cognate Dna
pdb|3V21|B Chain B, Crystal Structure Of Type Iif Restriction Endonuclease
Bse634i With Cognate Dna
pdb|3V21|C Chain C, Crystal Structure Of Type Iif Restriction Endonuclease
Bse634i With Cognate Dna
pdb|3V21|D Chain D, Crystal Structure Of Type Iif Restriction Endonuclease
Bse634i With Cognate Dna
pdb|3V21|E Chain E, Crystal Structure Of Type Iif Restriction Endonuclease
Bse634i With Cognate Dna
pdb|3V21|F Chain F, Crystal Structure Of Type Iif Restriction Endonuclease
Bse634i With Cognate Dna
pdb|3V21|G Chain G, Crystal Structure Of Type Iif Restriction Endonuclease
Bse634i With Cognate Dna
pdb|3V21|H Chain H, Crystal Structure Of Type Iif Restriction Endonuclease
Bse634i With Cognate Dna
Length = 293
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 29/44 (65%), Gaps = 3/44 (6%)
Query: 416 SLIESLRKIENEVKEVLRILGLLPP--GAYSEVK-TAFLVLLHV 456
S+ E+L K+EN VK+V++ GL P GA+S + T F V++ +
Sbjct: 42 SIKENLDKLENYVKDVVKAKGLAIPTSGAFSNTRGTWFEVMIAI 85
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,618,634
Number of Sequences: 62578
Number of extensions: 558651
Number of successful extensions: 1397
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1363
Number of HSP's gapped (non-prelim): 42
length of query: 464
length of database: 14,973,337
effective HSP length: 102
effective length of query: 362
effective length of database: 8,590,381
effective search space: 3109717922
effective search space used: 3109717922
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)