BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012397
(464 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A1AK01|SYC_PELPD Cysteine--tRNA ligase OS=Pelobacter propionicus (strain DSM 2379)
GN=cysS PE=3 SV=1
Length = 493
Score = 421 bits (1082), Expect = e-117, Method: Compositional matrix adjust.
Identities = 218/440 (49%), Positives = 279/440 (63%), Gaps = 11/440 (2%)
Query: 17 LTLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKC 76
+ L+IYN++T +K+ F P+ GK GMYVCGVT YD H+GHARA V FD++YRYL +
Sbjct: 1 MALRIYNTLTGEKDTFVPLHPGKAGMYVCGVTVYDYCHIGHARANVVFDVIYRYLGYSGY 60
Query: 77 EVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHME 136
VTYVRNFTD+DDKII RAN G + ++S RY + + DMA L PT +P+ +DHM
Sbjct: 61 AVTYVRNFTDIDDKIINRANQEGVDYTTISERYIEAFNQDMARLGLAKPTVEPKATDHMG 120
Query: 137 QIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPAD 196
I +I +I AY +GDV++AVE P+Y RLSG+ LE+ AG RV VD RKRNP D
Sbjct: 121 GIISVIETLIAKGHAYESDGDVYYAVESFPSYLRLSGRNLEDMLAGARVEVDDRKRNPMD 180
Query: 197 FALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIA 256
FALWK +K GEPSWDSPWG GRPGWHIECSAMS YL FDIHGGG DL+FPHHENEIA
Sbjct: 181 FALWKGSKPGEPSWDSPWGAGRPGWHIECSAMSMEYLGKTFDIHGGGKDLVFPHHENEIA 240
Query: 257 QSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRS 316
QS AA V YWMHNG V N+EKMSKSLGNFFTIR++ E+Y P LR F++SAHYRS
Sbjct: 241 QSEAANGCQFVRYWMHNGFVNINSEKMSKSLGNFFTIREVLEQYDPETLRFFILSAHYRS 300
Query: 317 PLNYSVLQLDSASDAVFYIYQTLQDCEVALS----PFQEHGKTARINPAAEDCINKLR-- 370
P+++S L+ A + IY L + A+ P Q + A + PA + KL+
Sbjct: 301 PIDFSDQNLNDAQAGLERIYSCLAAVDGAMEGQDVPNQPV-EGAPLPPAGAELHEKLQSL 359
Query: 371 -DEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVK 429
F M DD NT+ L G +A++ N + + P L+L+ +R++ E
Sbjct: 360 ISRFREAMDDDFNTAQAL-GVLFEAVRATNRFMAESGDQTPA--TLALLGQVRRLFAETG 416
Query: 430 EVLRILGLLPPGAYSEVKTA 449
+VL + P +K A
Sbjct: 417 DVLGLFTSQPAAWLESIKQA 436
>sp|B3E1P0|SYC_GEOLS Cysteine--tRNA ligase OS=Geobacter lovleyi (strain ATCC BAA-1151 /
DSM 17278 / SZ) GN=cysS PE=3 SV=1
Length = 487
Score = 413 bits (1061), Expect = e-114, Method: Compositional matrix adjust.
Identities = 209/427 (48%), Positives = 273/427 (63%), Gaps = 11/427 (2%)
Query: 17 LTLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKC 76
+ L++YN+++ +KE F P V GKVGMYVCGVT YD H+GHARA + FD++YRYL
Sbjct: 1 MALRLYNTLSGEKEPFVPRVAGKVGMYVCGVTVYDFCHIGHARAGIVFDMIYRYLRFSGY 60
Query: 77 EVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHME 136
+VTY+RN+TD+DDKII RAN G + ++++RY + DM L L PT +P+ +DH+E
Sbjct: 61 DVTYIRNYTDIDDKIINRANQEGTDYRTIADRYIATFDEDMDRLGMLRPTIEPKATDHIE 120
Query: 137 QIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPAD 196
I +I ++I+N AY V+GDV+FAVE P Y +LSG+ L++ AG RV VD RKRNP D
Sbjct: 121 DIISIIQRLIDNGHAYAVDGDVYFAVETFPAYLKLSGRNLDDMLAGARVDVDERKRNPMD 180
Query: 197 FALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIA 256
FALWK +K GEP W+SPWG GRPGWHIECSAMS +L FDIHGGG DL+FPHHENEIA
Sbjct: 181 FALWKGSKPGEPWWESPWGKGRPGWHIECSAMSMRFLGPSFDIHGGGKDLVFPHHENEIA 240
Query: 257 QSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRS 316
QS A V YW+HNG V N+EKMSKSLGNFFTIR++ E + P LR F++ AHYRS
Sbjct: 241 QSEGANGCQFVKYWLHNGFVNINSEKMSKSLGNFFTIREVLELFDPETLRFFILQAHYRS 300
Query: 317 PLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAA----EDCINKLRDE 372
PL+YS L A + IY+ L + AL E TA PA+ + + L
Sbjct: 301 PLDYSDQNLREAQAGLSRIYEALAALDQAL----EKPATAIHLPASAAEFAEKVAGLLPR 356
Query: 373 FHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVL 432
F M DD NT+ L G D+++ +N L + + +E LR E+ VL
Sbjct: 357 FREAMDDDFNTAQAL-GTLFDSIRTLNRLL--AEGGGSSSASRADLEQLRAAVTEIGAVL 413
Query: 433 RILGLLP 439
+ + P
Sbjct: 414 GLFRIKP 420
>sp|A0LIR9|SYC_SYNFM Cysteine--tRNA ligase OS=Syntrophobacter fumaroxidans (strain DSM
10017 / MPOB) GN=cysS PE=3 SV=1
Length = 493
Score = 410 bits (1054), Expect = e-113, Method: Compositional matrix adjust.
Identities = 206/427 (48%), Positives = 271/427 (63%), Gaps = 10/427 (2%)
Query: 17 LTLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKC 76
+ L +YN++T+ KE F P+ GKV YVCGVT YDLSH+GHAR+A+ FD++YRYL L
Sbjct: 1 MVLHVYNTLTKSKEEFIPLEPGKVKFYVCGVTVYDLSHIGHARSAIVFDVIYRYLRFLGF 60
Query: 77 EVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHME 136
EVTYVRNFTDVDDKIIRRAND G + S++ RY + DM L L P +P ++++
Sbjct: 61 EVTYVRNFTDVDDKIIRRANDAGTDCRSIAQRYIAAFYEDMDALGVLRPDLEPLATENVP 120
Query: 137 QIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPAD 196
+ ++I +++ AY DVFF +EK P YG+LSG+++E+ AG RV VD+RKRNP D
Sbjct: 121 GMIEIIRVLMDKGIAYQAGADVFFEIEKFPGYGKLSGRQIEDMLAGARVEVDARKRNPLD 180
Query: 197 FALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIA 256
F LWK +K GEPSWDSPWGPGRPGWHIECSAM + +L FDIHGGG DLIFPHHENEIA
Sbjct: 181 FVLWKGSKPGEPSWDSPWGPGRPGWHIECSAMGSRFLGKTFDIHGGGKDLIFPHHENEIA 240
Query: 257 QSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRS 316
QS AA V YW+HNG V NNEKMSKSLGNF TIR + ++ HP +R F++S HYRS
Sbjct: 241 QSEAAFGMPFVRYWLHNGFVNINNEKMSKSLGNFLTIRDVLQKVHPETVRFFVLSKHYRS 300
Query: 317 PLNYSVLQLDSASDAVFYIYQTLQDCEVALS-----PFQEHGKTARINPAAEDCINKLRD 371
P+++S + A + +Y TL + + FQE + +P D I L
Sbjct: 301 PVDFSDETIGEAEKGLERLYGTLGAVKERAAAGVEEAFQEKALRGQ-DPELFDQIAALSG 359
Query: 372 EFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEV 431
F M +D NT+ L F + + L+ +KQ K +L R + +++
Sbjct: 360 AFREAMDNDFNTAQALGNLFS-LQRHLQRFLDKFGRKQLKGPASALA---RAGADAIRDH 415
Query: 432 LRILGLL 438
+LGLL
Sbjct: 416 ALVLGLL 422
>sp|B8GNT5|SYC_THISH Cysteine--tRNA ligase OS=Thioalkalivibrio sp. (strain HL-EbGR7)
GN=cysS PE=3 SV=1
Length = 460
Score = 409 bits (1052), Expect = e-113, Method: Compositional matrix adjust.
Identities = 204/393 (51%), Positives = 262/393 (66%), Gaps = 21/393 (5%)
Query: 19 LKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
L+I+NS+T++KE FTP+ G+V MYVCG+T YD HLGHAR V FD++YRYL+ L +V
Sbjct: 2 LQIHNSLTRRKETFTPMEPGRVRMYVCGMTVYDYCHLGHARVLVVFDVVYRYLKALGFDV 61
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
TY+RN TD+DDKIIRRA + GE+ +L++R+ D L LPP+ +PR ++H++ +
Sbjct: 62 TYIRNITDIDDKIIRRAAENGEDIRALTDRFIAAMHEDAEALGVLPPSAEPRATEHIDGM 121
Query: 139 KDMITQIINNDCAYVVE-GDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADF 197
MI ++ AY + GDV++AV K YGRLSG+RLE+ RAGERVA D KR+P DF
Sbjct: 122 LAMIGTLVERGYAYAGDNGDVYYAVAKFEPYGRLSGKRLEDLRAGERVAPDEAKRDPLDF 181
Query: 198 ALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257
LWKAAK GEP+WDSPWGPGRPGWHIECSAMS HYL + FDIHGGG DL FPHHENEIAQ
Sbjct: 182 VLWKAAKPGEPAWDSPWGPGRPGWHIECSAMSTHYLGNHFDIHGGGQDLQFPHHENEIAQ 241
Query: 258 SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSP 317
S AA + V+YWMHNG V N EKMSKSLGNFFT+R++ RY +R+F++S+HYRSP
Sbjct: 242 SEAATCEHFVNYWMHNGFVRVNEEKMSKSLGNFFTVREVLARYPAEVVRYFILSSHYRSP 301
Query: 318 LNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARM 377
LNYS LD+A + +Y L+ + ++PA + R F A M
Sbjct: 302 LNYSDEPLDAARAGLTRLYTALRGVQA-------------VDPAGQG--EGYRRRFQAAM 346
Query: 378 SDDLNTSHILTGAFQDALKFINSSLNMLKKKQP 410
DD NT + F I LN L+ + P
Sbjct: 347 DDDFNTPVAMAVLFD-----IARELNRLRDEDP 374
>sp|Q3J8Y9|SYC_NITOC Cysteine--tRNA ligase OS=Nitrosococcus oceani (strain ATCC 19707 /
NCIMB 11848) GN=cysS PE=3 SV=1
Length = 485
Score = 409 bits (1051), Expect = e-113, Method: Compositional matrix adjust.
Identities = 210/421 (49%), Positives = 267/421 (63%), Gaps = 17/421 (4%)
Query: 19 LKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
L+IYNS+T++KE F PI GKV MYVCG+T YDL H+GHAR V FD++ RYL EV
Sbjct: 2 LRIYNSLTRRKEEFIPIESGKVRMYVCGMTVYDLCHVGHARVMVVFDMVVRYLRASGFEV 61
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
YVRN TD+DDKII RAN+ GE+ +L+ RY Q D A LQ LPP +PR ++ ME I
Sbjct: 62 IYVRNITDIDDKIIHRANERGESIHTLTARYIQALHEDEASLQILPPDREPRATESMEAI 121
Query: 139 KDMITQIINNDCAYVVE-GDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADF 197
M+ Q+++ AY E GD+++ V YG LSG+ LE+ RAGERV V+ K +P DF
Sbjct: 122 LAMVRQLLDQGYAYQGENGDIYYDVSHFEGYGALSGRHLEDLRAGERVQVNEAKTDPLDF 181
Query: 198 ALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257
LWKAAK+GEP+W+SPWGPGRPGWHIECSAMS L + FDIHGGG DL FPHHENEIAQ
Sbjct: 182 VLWKAAKSGEPAWESPWGPGRPGWHIECSAMSIQELGTHFDIHGGGQDLQFPHHENEIAQ 241
Query: 258 SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSP 317
S AA V+YWMHNG V N+EKMSKSLGNFFT+R++ E YHP LR+F++S+HYRSP
Sbjct: 242 SEAATGGKFVNYWMHNGFVRLNDEKMSKSLGNFFTVREVLEHYHPEVLRYFILSSHYRSP 301
Query: 318 LNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARM 377
LNY+ QLD+A A+ +Y L+ G + + + + R+ M
Sbjct: 302 LNYTKQQLDTAKAAMTRLYTALRGIPRGEDRASAQGLSWEFTDGGDPFVLRFREA----M 357
Query: 378 SDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGL 437
DD NT L L + +LN ++ ++ SL LR + ILGL
Sbjct: 358 DDDFNTPEALA-----LLNEVRHALNRAREAGDTEKGQSLAVLLRSLGG-------ILGL 405
Query: 438 L 438
L
Sbjct: 406 L 406
>sp|Q0A7N3|SYC_ALHEH Cysteine--tRNA ligase OS=Alkalilimnicola ehrlichei (strain MLHE-1)
GN=cysS PE=3 SV=2
Length = 462
Score = 399 bits (1026), Expect = e-110, Method: Compositional matrix adjust.
Identities = 199/375 (53%), Positives = 245/375 (65%), Gaps = 15/375 (4%)
Query: 19 LKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
L I+NS+TQ+KE F PI G V MYVCG+T YD HLGHARA V FD++ RYL HL V
Sbjct: 2 LHIHNSLTQRKERFEPIQPGHVRMYVCGMTVYDYCHLGHARALVVFDMVARYLRHLGYRV 61
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
T+VRN TD+DDKIIRRA +LGE +++ R+ + D L LPP ++PR + H++ I
Sbjct: 62 TFVRNITDIDDKIIRRAAELGEPMGAVTERFIRAMHEDAEALGVLPPDHEPRATGHIDDI 121
Query: 139 KDMITQIINNDCAYVVE-GDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADF 197
MI +++ AYV + GDV+FAV P YG+LSG+R E+ RAG RV VD KR+P DF
Sbjct: 122 IAMIERLVERGHAYVADDGDVYFAVSSYPEYGKLSGERQEDLRAGARVEVDEGKRDPVDF 181
Query: 198 ALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257
ALWKAA+ GEP+W SPWG GRPGWHIECSAMS L FDIHGGG+DL FPHHENEIAQ
Sbjct: 182 ALWKAARPGEPAWPSPWGEGRPGWHIECSAMSTQVLGDHFDIHGGGLDLKFPHHENEIAQ 241
Query: 258 SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSP 317
S A V+YWMHNGHV N+EKM+KSLGNFFT+R++ + A+R FL+S+HYRSP
Sbjct: 242 SECATGHPFVNYWMHNGHVRINDEKMAKSLGNFFTVREVLSEHRAEAVRLFLLSSHYRSP 301
Query: 318 LNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARM 377
LNYS+ L A A+ +Y L+ A P E R FHA M
Sbjct: 302 LNYSLDGLRQAQGALERLYLALRGLPEA--------------PVPEADPQGFRARFHAAM 347
Query: 378 SDDLNTSHILTGAFQ 392
DD NT L F+
Sbjct: 348 DDDFNTPEALAVLFE 362
>sp|Q3A8C9|SYC_PELCD Cysteine--tRNA ligase OS=Pelobacter carbinolicus (strain DSM 2380 /
Gra Bd 1) GN=cysS PE=3 SV=1
Length = 481
Score = 399 bits (1025), Expect = e-110, Method: Compositional matrix adjust.
Identities = 197/390 (50%), Positives = 256/390 (65%), Gaps = 22/390 (5%)
Query: 17 LTLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKC 76
++L++YN+MT +KE F P+ GKVGMYVCGVT YD H+GHARA V FD++YRYL+ +
Sbjct: 1 MSLRVYNTMTGRKEEFEPLQPGKVGMYVCGVTVYDYCHIGHARANVVFDIIYRYLQFIGF 60
Query: 77 EVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHME 136
+VTYVRN+TDVDDKII+RAN+ G + +L+ + Q + DM L PT QP+ + H++
Sbjct: 61 DVTYVRNYTDVDDKIIKRANERGISSDTLAGEFIQAFDEDMNRLGLAEPTIQPKATCHID 120
Query: 137 QIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPAD 196
I +++ ++I+ AY +GDV+F+VE P+Y +LS + ++ R+G R+ +KRNP D
Sbjct: 121 HIVNLVQRLIDRGIAYESQGDVYFSVEDFPSYLKLSKRNMDEMRSGARITPGEQKRNPMD 180
Query: 197 FALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIA 256
FALWKAAK GEPSW+SPWGPGRPGWHIECSAMS YL FDIHGGG DL+FPHHENEIA
Sbjct: 181 FALWKAAKPGEPSWESPWGPGRPGWHIECSAMSMEYLGESFDIHGGGKDLVFPHHENEIA 240
Query: 257 QSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRS 316
QS A V YW+HNG V N EKMSKSLGNFFTIR I + Y P LR F+++AHYRS
Sbjct: 241 QSEGATGKPFVKYWLHNGFVNVNQEKMSKSLGNFFTIRDILQTYDPEVLRFFILTAHYRS 300
Query: 317 PLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAA-------EDCINKL 369
P+++S Q LQD + LS F E A AA + L
Sbjct: 301 PIDFSD--------------QNLQDARLGLSRFYEGLHAASEVLAACPPGDVTSEAGATL 346
Query: 370 RDEFHARMSDDLNTSHILTGAFQDALKFIN 399
+ F M DD NT+ + G DA++ IN
Sbjct: 347 ENVFREAMDDDFNTAAAI-GHLFDAVRTIN 375
>sp|Q39ZL8|SYC_GEOMG Cysteine--tRNA ligase OS=Geobacter metallireducens (strain GS-15 /
ATCC 53774 / DSM 7210) GN=cysS PE=3 SV=1
Length = 485
Score = 399 bits (1024), Expect = e-110, Method: Compositional matrix adjust.
Identities = 201/431 (46%), Positives = 273/431 (63%), Gaps = 10/431 (2%)
Query: 17 LTLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKC 76
++L++YN+++ KE FTP+V G+V MYVCGVT YD H+GHARA V FD++YRYL H
Sbjct: 1 MSLRVYNTLSGTKEEFTPLVPGRVSMYVCGVTVYDHCHIGHARANVVFDMIYRYLRHAGY 60
Query: 77 EVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHME 136
+VTYVRN+TDVDDKII RAN G ++S R+ E+ DMA L PT+QP+ ++H+
Sbjct: 61 DVTYVRNYTDVDDKIINRANQEGVPYNAISERFIAEFDRDMAALGLDLPTHQPKATEHIA 120
Query: 137 QIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPAD 196
++ D+I+++I AY +GDV+F VEK Y +LS + L+ +AG R+ V +KR+P D
Sbjct: 121 EMIDVISRLIEKGFAYAADGDVYFCVEKFDPYLKLSKRNLDEMQAGARIEVGEKKRHPMD 180
Query: 197 FALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIA 256
FALWK +K GEP W+SPWG GRPGWHIECSAMS YL FDIHGGG DL+FPHHENEIA
Sbjct: 181 FALWKGSKPGEPFWESPWGQGRPGWHIECSAMSMKYLGETFDIHGGGKDLVFPHHENEIA 240
Query: 257 QSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRS 316
QS AA YW+HNG V N+EKMSKSLGNFFTI+++ E+Y LR FL+SAHYRS
Sbjct: 241 QSEAANGKPFAHYWIHNGFVNINSEKMSKSLGNFFTIKEVLEKYDAEVLRFFLLSAHYRS 300
Query: 317 PLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHAR 376
P+++S L A + IY TL + L+ E AE + + F
Sbjct: 301 PIDFSDQNLREAEAGLERIYGTLAGIDENLTKGAEGTAEETDRELAEKAVT-FPERFREA 359
Query: 377 MSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG 436
M DD NT+ L F + S+ +L + + +L+ R + +++V +LG
Sbjct: 360 MDDDFNTAQALGFVFD----LVRSANRVLGEGKGGGSNRALLAEAR---DRIRKVGAVLG 412
Query: 437 LLP--PGAYSE 445
+ P A++E
Sbjct: 413 IFTSEPRAFAE 423
>sp|Q60BG8|SYC_METCA Cysteine--tRNA ligase OS=Methylococcus capsulatus (strain ATCC
33009 / NCIMB 11132 / Bath) GN=cysS PE=3 SV=1
Length = 465
Score = 396 bits (1018), Expect = e-109, Method: Compositional matrix adjust.
Identities = 203/382 (53%), Positives = 247/382 (64%), Gaps = 13/382 (3%)
Query: 19 LKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
LKIYNS+T+QKE F P+ +V MYVCG+T YD HLGHAR V FD++ RYL HL +V
Sbjct: 2 LKIYNSLTRQKEEFRPLEPRRVRMYVCGMTVYDYCHLGHARVMVVFDMVARYLRHLGLKV 61
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
TYVRN TD+DDKIIRRA + GE +L+ R+ + D L LPP ++PR ++ ++ I
Sbjct: 62 TYVRNVTDIDDKIIRRAVENGETIGALTARFIEAMHEDERALGVLPPDHEPRATESIDDI 121
Query: 139 KDMITQIINNDCAYV-VEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADF 197
MI +I AYV GDVF+AV PNYGRLSG+ L+ RAGER+ VD KR+P DF
Sbjct: 122 LAMIGTLIERGHAYVGSNGDVFYAVASFPNYGRLSGKNLDELRAGERIEVDEAKRDPLDF 181
Query: 198 ALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257
LWK+AK GEP W SPWGPGRPGWHIECSAMS L + FDIHGGG+DL FPHHENEIAQ
Sbjct: 182 VLWKSAKPGEPFWASPWGPGRPGWHIECSAMSTRCLGAHFDIHGGGMDLQFPHHENEIAQ 241
Query: 258 SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSP 317
S A + V+YWMHNG V N EKMSKSLGNFFT+R+I RY P +R F++++HYRSP
Sbjct: 242 SEGATGEHFVNYWMHNGFVRINEEKMSKSLGNFFTVREILARYRPEVVRFFILNSHYRSP 301
Query: 318 LNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARM 377
LNYS LD A+ A+ +Y L+ L P P ED F M
Sbjct: 302 LNYSDENLDEAAAALSRLYTALRGLAPDL-PL----------PLGEDRDEGFSSRFADAM 350
Query: 378 SDDLNTSHILTGAFQDALKFIN 399
DD NT + F D + IN
Sbjct: 351 QDDFNTPEAIAVLF-DLAREIN 371
>sp|Q6AJ23|SYC_DESPS Cysteine--tRNA ligase OS=Desulfotalea psychrophila (strain LSv54 /
DSM 12343) GN=cysS PE=3 SV=1
Length = 489
Score = 396 bits (1018), Expect = e-109, Method: Compositional matrix adjust.
Identities = 191/427 (44%), Positives = 279/427 (65%), Gaps = 17/427 (3%)
Query: 17 LTLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKC 76
+ +++YN+++ +KE PI V +YVCG+T+YD H+GHAR+A++FD++ RYL +L
Sbjct: 1 MDIRVYNTLSGKKEPLQPIEPNHVKLYVCGITSYDYCHIGHARSALAFDMIVRYLRYLDY 60
Query: 77 EVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHME 136
+VT+VRNFTD+DDKII RAN+ G +L+ R+ E+ DM +L L P +P+ ++H++
Sbjct: 61 KVTFVRNFTDIDDKIIARANETGVTAQALAERFIDEFHTDMDNLGTLRPDIEPKATEHIQ 120
Query: 137 QIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPAD 196
++ D+I ++++ D AY GDV++ V P YG+LSG+ +E+ +AG R++++ +KRNP D
Sbjct: 121 EMIDIIQELVDKDMAYPSAGDVYYVVNSFPEYGKLSGRNIEDMQAGARISINEQKRNPMD 180
Query: 197 FALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIA 256
FALWKA+K GEPSW+SPWGPGRPGWHIECSAMS YL FDIHGGG DLIFPHHENEIA
Sbjct: 181 FALWKASKPGEPSWESPWGPGRPGWHIECSAMSRKYLGENFDIHGGGKDLIFPHHENEIA 240
Query: 257 QSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRS 316
QS A + W+H+G VT +EKMSKSLGNF TI+ I + YHP LR F+ S YR+
Sbjct: 241 QSEGANGKPFANTWIHHGFVTIKDEKMSKSLGNFLTIKDILDHYHPEILRAFIFSTQYRN 300
Query: 317 PLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPA---AEDC--INKLRD 371
PL++S + + A A+ +Y+ L D Q+ K PA A+D +N +
Sbjct: 301 PLDFSEIAMQDAETALVRLYECLHD-------IQQLAKGDPTLPALISAKDAAKLNSIET 353
Query: 372 EFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEV 431
F M++D NT+ L G DA+K IN + L P + +++ + ++++
Sbjct: 354 RFQEAMNNDFNTALAL-GVLYDAIKIINRAQRALTDT-PSALDVKMLKGSMTL---IQKL 408
Query: 432 LRILGLL 438
I+GLL
Sbjct: 409 AGIVGLL 415
>sp|B9LZV4|SYC_GEOSF Cysteine--tRNA ligase OS=Geobacter sp. (strain FRC-32) GN=cysS PE=3
SV=1
Length = 494
Score = 395 bits (1015), Expect = e-109, Method: Compositional matrix adjust.
Identities = 207/440 (47%), Positives = 277/440 (62%), Gaps = 19/440 (4%)
Query: 17 LTLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKC 76
+ L++YN+++ KE F P+ GKV MYVCGVT YD H+GHARA V FD++YRY HL
Sbjct: 1 MGLRVYNTLSGNKEEFVPVEPGKVKMYVCGVTVYDHCHIGHARANVVFDVIYRYFCHLGL 60
Query: 77 EVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHME 136
+VTYVRN+TD+DDKII RAN G +S R+ +E+ DM L PT QP+ ++H++
Sbjct: 61 DVTYVRNYTDIDDKIINRANREGVTYDLISERFIKEFDRDMERLGLKLPTCQPKATEHID 120
Query: 137 QIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPAD 196
+I ++ +I+ D AY GDV F VEK +Y +LSG+ LE+ +AG R+ VD RKR+P D
Sbjct: 121 EIISLVQTLIDKDFAYQAGGDVNFCVEKFDSYLKLSGRTLEDMQAGARIEVDERKRHPMD 180
Query: 197 FALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIA 256
FALWK AK GEP W+SPWG GRPGWHIECSAMS YL + FDIHGGG DLIFPHHENEIA
Sbjct: 181 FALWKEAKPGEPFWESPWGKGRPGWHIECSAMSMKYLGTTFDIHGGGKDLIFPHHENEIA 240
Query: 257 QSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRS 316
QS AA V+YW+HNG V N+EKMSKSLGNFFTI+++ +RY LR FL+SAHYRS
Sbjct: 241 QSEAATGKPFVNYWLHNGFVNINSEKMSKSLGNFFTIKEVLDRYDNEVLRFFLLSAHYRS 300
Query: 317 PLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKT------ARINPAAEDCINK-- 368
P+++S L A + IY+ L E L+ +G T + +N A + +K
Sbjct: 301 PIDFSDQNLTEAEAGLERIYKALAAVEETLAA--GNGCTGAPVDASSLNEAEGELFDKTT 358
Query: 369 -LRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENE 427
+ F M DD NT+ + F D ++ +N L+ L + I+ E
Sbjct: 359 SISARFGEAMDDDFNTALAMAHVF-DLVRCVNRVLSETAGASDNICSLCTL-----IKAE 412
Query: 428 VKEVLRILGLLP--PGAYSE 445
V ++ +LG+ P ++ E
Sbjct: 413 VAKIAGVLGIFSSKPASFLE 432
>sp|B0TC35|SYC_HELMI Cysteine--tRNA ligase OS=Heliobacterium modesticaldum (strain ATCC
51547 / Ice1) GN=cysS PE=3 SV=1
Length = 481
Score = 394 bits (1013), Expect = e-109, Method: Compositional matrix adjust.
Identities = 199/427 (46%), Positives = 276/427 (64%), Gaps = 15/427 (3%)
Query: 17 LTLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKC 76
++L++YN+++++KE F P G+VGMYVCG T YD HLG+AR V FD + RYLEH+
Sbjct: 1 MSLRVYNTLSREKETFVPHKAGRVGMYVCGPTTYDYIHLGNARPLVVFDTIRRYLEHVGY 60
Query: 77 EVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHME 136
EV Y++NFTD+DDKII RA ++GE+P++++ R+ +EY D L P T P+VS HM
Sbjct: 61 EVVYIQNFTDIDDKIIHRAKEIGEDPIAMAARFVEEYYRDAKALNVRPATIHPKVSAHMA 120
Query: 137 QIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPAD 196
+I MI ++ AY + GDV+F++ +YG+LSG+ LE+ +AG RV V+ RKR+P D
Sbjct: 121 EIIAMIGVLVEKGHAYELGGDVYFSIPSFKDYGKLSGRSLEDLQAGARVDVNERKRHPMD 180
Query: 197 FALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIA 256
FALWK AK GEPSWDSPWG GRPGWHIECSAMS YL FDIHGGG DLIFPHHENEIA
Sbjct: 181 FALWKGAKPGEPSWDSPWGKGRPGWHIECSAMSRKYLGDAFDIHGGGQDLIFPHHENEIA 240
Query: 257 QSCAACQDSNVS-YWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYR 315
QS A S ++ YW+HNG +T N EKMSKSLGNFFT+R+I +R+ +R +L+S HYR
Sbjct: 241 QSEACTGTSPMARYWLHNGFITVNQEKMSKSLGNFFTLREILKRFPGDVIRFYLLSTHYR 300
Query: 316 SPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAA-----EDCINKLR 370
SP+++ +L++A + + + + E AL+ GK PA E+ +
Sbjct: 301 SPIDFDDSKLEAAQKGLQRLRTSRRLIEEALAA---SGKEGAERPAGQREKLEEQWLAAK 357
Query: 371 DEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKE 430
F M DD NT+ L+ F D + N+ L+ P+ +QL L ++ +E
Sbjct: 358 KGFREAMDDDFNTALALSMLF-DLAREANTFLHGGFALTPEDRQLLL-----QVAETFEE 411
Query: 431 VLRILGL 437
+ +LG+
Sbjct: 412 LAGVLGI 418
>sp|A4J0Y9|SYC_DESRM Cysteine--tRNA ligase OS=Desulfotomaculum reducens (strain MI-1)
GN=cysS PE=3 SV=1
Length = 486
Score = 394 bits (1013), Expect = e-109, Method: Compositional matrix adjust.
Identities = 199/420 (47%), Positives = 268/420 (63%), Gaps = 5/420 (1%)
Query: 19 LKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
++IYN++ + KE F P +G V MYVCG T Y+ HLG+AR V FD + RY + +V
Sbjct: 1 MQIYNTLARAKEEFIPRDKGHVSMYVCGPTTYNFIHLGNARPLVFFDTVRRYFLYKGYKV 60
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
YV+NFTDVDDKII RA + +PL L+ +Y QE+ VD L + P+VS+H+E+I
Sbjct: 61 DYVQNFTDVDDKIINRAAEEKIDPLELAQKYIQEFFVDADALNVMRADTHPKVSEHIEEI 120
Query: 139 KDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFA 198
D+I ++ + AYVV+GDV+FAV YG+LSG+ LE+ +AG RV VD RK++P DFA
Sbjct: 121 IDLIKRLEDQGHAYVVDGDVYFAVRSFAEYGKLSGRSLEDMQAGARVEVDPRKKDPMDFA 180
Query: 199 LWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQS 258
LWKAAK GEPSWDSPWG GRPGWHIECSAM+ YL + FDIHGGG DLIFPHHENEIAQS
Sbjct: 181 LWKAAKPGEPSWDSPWGSGRPGWHIECSAMAEKYLGNGFDIHGGGFDLIFPHHENEIAQS 240
Query: 259 CAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPL 318
AAC+ YWMHNG +T N EKMSKSLGNFF +R+I ++ P +R +L+S HYRSPL
Sbjct: 241 EAACKAPFARYWMHNGFITINQEKMSKSLGNFFLVREILAKFPPDVVRWYLLSTHYRSPL 300
Query: 319 NYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMS 378
++ +L + + I L+ A+ G+ + E+ + ++R EF M
Sbjct: 301 DFDDEKLVMSGKGLERIKTALRLLYEAMDLPVYEGEDIQGAENFEETLQRIRLEFEKAMD 360
Query: 379 DDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLL 438
DD NT+ + F D K +N + L K L + + L + +K+ R+LG+L
Sbjct: 361 DDFNTA-LAISYFFDLAKEVNIYVGKLNSK----VTLEMRKILDQAHTLIKDFNRVLGIL 415
>sp|A5D5M0|SYC_PELTS Cysteine--tRNA ligase OS=Pelotomaculum thermopropionicum (strain
DSM 13744 / JCM 10971 / SI) GN=cysS PE=3 SV=1
Length = 484
Score = 394 bits (1012), Expect = e-109, Method: Compositional matrix adjust.
Identities = 205/417 (49%), Positives = 264/417 (63%), Gaps = 5/417 (1%)
Query: 19 LKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
++IYN++T++KE F P G+V MYVCG T Y+ HLG+AR V FD + RYL H EV
Sbjct: 1 MEIYNTLTRRKENFQPREPGRVCMYVCGPTTYNYIHLGNARPLVFFDTVRRYLIHKGYEV 60
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
+V+NFTDVDDKII RA + G++PL+L+ RY EY D L P VS+H+ I
Sbjct: 61 LFVQNFTDVDDKIINRAQEEGDDPLALARRYIGEYFKDADALNVRRADRHPLVSEHIPDI 120
Query: 139 KDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFA 198
M+ +++ AYVV+G+V+F V K YG+LSG+ LE+ +AG RV VD RKR+P DFA
Sbjct: 121 IKMVDELVKKGAAYVVDGNVYFEVRKFAGYGKLSGRTLEDMQAGARVEVDPRKRDPLDFA 180
Query: 199 LWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQS 258
LWKAAK GEP WDSPWGPGRPGWHIECSAMS YL + FDIHGGG DLIFPHHENEIAQS
Sbjct: 181 LWKAAKPGEPCWDSPWGPGRPGWHIECSAMSLKYLGTNFDIHGGGYDLIFPHHENEIAQS 240
Query: 259 CAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPL 318
AA V YWMHNG +T N EKMSKSLGNFF +R I ++ P +R FL+S HYRSPL
Sbjct: 241 EAATGQPFVRYWMHNGFITVNEEKMSKSLGNFFLVRDILAKFPPELVRFFLLSTHYRSPL 300
Query: 319 NYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMS 378
++ ++ +A + I +L+ AL G A + D +++R F A M
Sbjct: 301 DFDGEKMAAAGRGLERIKTSLRLLYEALERPVSEGVQA---VCSRDPFDEIRASFEAAMD 357
Query: 379 DDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRIL 435
DD NT+ + GA D + N+++ Q + L +L + NE EVL I
Sbjct: 358 DDFNTA-LAIGAVFDLAREANTAVQRTGPAVSGQDRQILQYAL-DLFNEFNEVLGIF 412
>sp|A5G949|SYC_GEOUR Cysteine--tRNA ligase OS=Geobacter uraniireducens (strain Rf4)
GN=cysS PE=3 SV=1
Length = 494
Score = 392 bits (1006), Expect = e-108, Method: Compositional matrix adjust.
Identities = 201/429 (46%), Positives = 270/429 (62%), Gaps = 13/429 (3%)
Query: 17 LTLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKC 76
+ L++YN++T KE F PI GKV MYVCGVT YD H+GHARA V FD++YRYL L
Sbjct: 1 MALRVYNTLTGTKEDFVPIEPGKVKMYVCGVTVYDHCHIGHARANVVFDVIYRYLRSLGL 60
Query: 77 EVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHME 136
EV YVRN+TD+DDKII RAN G ++S R+ +E+ DMA L L PT QP+ ++H+
Sbjct: 61 EVNYVRNYTDIDDKIINRANREGVAYDAISERFIKEFDRDMAQLGLLLPTSQPKATEHIP 120
Query: 137 QIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPAD 196
+I ++ +I+ AY + GDV F VEK Y +LS + LE+ +AG R+ VD RKR+P D
Sbjct: 121 EIITLVQTLIDKGFAYQMGGDVNFCVEKFDPYLKLSKRNLEDMQAGARIEVDERKRHPMD 180
Query: 197 FALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIA 256
F LWK AK GEP W+SPWG GRPGWHIECSAMS YL FDIHGGG DL+FPHHENEIA
Sbjct: 181 FVLWKEAKPGEPFWESPWGKGRPGWHIECSAMSMKYLGETFDIHGGGKDLVFPHHENEIA 240
Query: 257 QSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRS 316
QS AA V YW+HNG V N+EKMSKSLGNFFTI+++ ++Y LR FL+SAHYRS
Sbjct: 241 QSEAASGKPFVKYWLHNGFVNINSEKMSKSLGNFFTIKEVLDKYDSEVLRFFLLSAHYRS 300
Query: 317 PLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHG----KTARINPAAEDCINK---L 369
PL++S L A + IY+ L + L+ G + + A + +K L
Sbjct: 301 PLDFSDQNLTEAETGMERIYKALVAIDETLASNPATGGEEIDASSLGEAERELFDKSGSL 360
Query: 370 RDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVK 429
F M DD NT+ + G D ++ +N L+ + K++ +L +++ +
Sbjct: 361 PLRFREAMDDDFNTA-LAMGHIFDLVRCVNRVLS-----EAKERSNTLSALCAQVKANIG 414
Query: 430 EVLRILGLL 438
++ +LG+
Sbjct: 415 KIADVLGIF 423
>sp|Q0HTK4|SYC_SHESR Cysteine--tRNA ligase OS=Shewanella sp. (strain MR-7) GN=cysS PE=3
SV=1
Length = 461
Score = 391 bits (1004), Expect = e-108, Method: Compositional matrix adjust.
Identities = 195/382 (51%), Positives = 250/382 (65%), Gaps = 17/382 (4%)
Query: 19 LKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
LKIYNS+T+QK+ F PI GKVGMYVCGVT YDL H+GH R VSFD++ RYL + EV
Sbjct: 4 LKIYNSITRQKQEFKPITPGKVGMYVCGVTVYDLCHIGHGRTFVSFDMIVRYLRYAGYEV 63
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
+ RN TD+DDKII+RAN+ E+ +L++R E D L + P ++PR + H+ +I
Sbjct: 64 NFQRNITDIDDKIIKRANENQEDCNTLTDRLIGEMHKDFDALNMIRPDFEPRATLHIAEI 123
Query: 139 KDMITQIINNDCAYVV-EGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADF 197
DM+ +++ AYV +GDV F+V P YGRLSGQ LE +AG RV VD K+NP DF
Sbjct: 124 IDMVERLLARGHAYVAADGDVLFSVASFPEYGRLSGQNLEQLQAGARVEVDDNKQNPMDF 183
Query: 198 ALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257
LWK +K GEP+W+SPWGPGRPGWHIECSAM++ +L FDIHGGG DL FPHHENEIAQ
Sbjct: 184 VLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSKHLGLHFDIHGGGSDLQFPHHENEIAQ 243
Query: 258 SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSP 317
SC A V+YWMH G V + EKMSKSLGNFFTIR + Y P +R+FL+S HYRS
Sbjct: 244 SCCAHDTPYVNYWMHTGMVMVDREKMSKSLGNFFTIRDVLGHYDPETVRYFLLSGHYRSQ 303
Query: 318 LNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARM 377
+NYS L A A+ +Y ++D ++ ++P AE+ + K F A M
Sbjct: 304 INYSEENLKQARAALERLYTAIKDVDLTVAP-----------APAEEFVAK----FKAAM 348
Query: 378 SDDLNTSHILTGAFQDALKFIN 399
DD NT + F D ++ IN
Sbjct: 349 DDDFNTPEAYSVLF-DMVREIN 369
>sp|Q0HH98|SYC_SHESM Cysteine--tRNA ligase OS=Shewanella sp. (strain MR-4) GN=cysS PE=3
SV=1
Length = 461
Score = 391 bits (1004), Expect = e-108, Method: Compositional matrix adjust.
Identities = 195/382 (51%), Positives = 250/382 (65%), Gaps = 17/382 (4%)
Query: 19 LKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
LKIYNS+T+QK+ F PI GKVGMYVCGVT YDL H+GH R VSFD++ RYL + EV
Sbjct: 4 LKIYNSITRQKQEFKPITPGKVGMYVCGVTVYDLCHIGHGRTFVSFDMIVRYLRYAGYEV 63
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
+ RN TD+DDKII+RAN+ E+ +L++R E D L + P ++PR + H+ +I
Sbjct: 64 NFQRNITDIDDKIIKRANENQEDCNTLTDRLIGEMHKDFDALNMIRPDFEPRATLHITEI 123
Query: 139 KDMITQIINNDCAYVV-EGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADF 197
DM+ +++ AYV +GDV F+V P YGRLSGQ LE +AG RV VD K+NP DF
Sbjct: 124 IDMVERLLARGHAYVAADGDVLFSVASFPEYGRLSGQNLEQLQAGARVEVDDNKQNPMDF 183
Query: 198 ALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257
LWK +K GEP+W+SPWGPGRPGWHIECSAM++ +L FDIHGGG DL FPHHENEIAQ
Sbjct: 184 VLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSKHLGLHFDIHGGGSDLQFPHHENEIAQ 243
Query: 258 SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSP 317
SC A V+YWMH G V + EKMSKSLGNFFTIR + Y P +R+FL+S HYRS
Sbjct: 244 SCCAHDTPYVNYWMHTGMVMVDREKMSKSLGNFFTIRDVLGHYDPETVRYFLLSGHYRSQ 303
Query: 318 LNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARM 377
+NYS L A A+ +Y ++D ++ ++P AE+ + K F A M
Sbjct: 304 INYSEENLKQARAALERLYTAIKDVDLTVAP-----------APAEEFVAK----FKAAM 348
Query: 378 SDDLNTSHILTGAFQDALKFIN 399
DD NT + F D ++ IN
Sbjct: 349 DDDFNTPEAYSVLF-DMVREIN 369
>sp|Q2SK40|SYC_HAHCH Cysteine--tRNA ligase OS=Hahella chejuensis (strain KCTC 2396)
GN=cysS PE=3 SV=1
Length = 467
Score = 390 bits (1003), Expect = e-108, Method: Compositional matrix adjust.
Identities = 203/421 (48%), Positives = 269/421 (63%), Gaps = 24/421 (5%)
Query: 19 LKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
LKIY+S++QQKE F PI GKVG+YVCG+T YD HLGHAR V FD++ RYL +V
Sbjct: 2 LKIYSSLSQQKEEFKPIQAGKVGIYVCGMTVYDYCHLGHARVLVCFDIITRYLRAKGYDV 61
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
YVRN TDVDDKI+ RA D GE+ +L+ R+ D L L PT +PR + H+++I
Sbjct: 62 NYVRNITDVDDKILNRARDNGESVDALTARFIDAMHEDERALGVLSPTSEPRATGHIDEI 121
Query: 139 KDMITQIINNDCAY-VVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADF 197
MI ++++ AY GDV+++VE+ +YG+LS Q+L+ RAG R+ VD+ KR+PADF
Sbjct: 122 IAMIQRLMDKGYAYHASNGDVYYSVEQFADYGKLSKQKLDEIRAGARIEVDAEKRSPADF 181
Query: 198 ALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257
LWKAAK GE SWDSPWG GRPGWHIECSAMS L FDIHGGG DL FPHHENEIAQ
Sbjct: 182 VLWKAAKPGELSWDSPWGEGRPGWHIECSAMSTRCLGDTFDIHGGGPDLKFPHHENEIAQ 241
Query: 258 SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSP 317
S AA V+YWMH G V N EKMSKSLGNFFTIR+I ++Y +R+FL S+HYRS
Sbjct: 242 SEAATGCKYVNYWMHAGAVRVNKEKMSKSLGNFFTIREILDKYPAEVVRYFLASSHYRSA 301
Query: 318 LNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARM 377
++YS + L+ A + +Y ++++ + E G + P + + R+ FH M
Sbjct: 302 IDYSDVALEEARSGLERLYNSIREL------YGELGAVSMDEP----LVGEYRERFHQAM 351
Query: 378 SDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGL 437
DD NTS + F D K +N + KK+ + + LSL + + ++ +LGL
Sbjct: 352 DDDFNTSSAVAVLF-DMAKAVN-----VAKKEDRTRALSLAKGM-------VDLAEVLGL 398
Query: 438 L 438
L
Sbjct: 399 L 399
>sp|Q8U227|SYC_PYRFU Cysteine--tRNA ligase OS=Pyrococcus furiosus (strain ATCC 43587 /
DSM 3638 / JCM 8422 / Vc1) GN=cysS PE=3 SV=2
Length = 477
Score = 390 bits (1003), Expect = e-107, Method: Compositional matrix adjust.
Identities = 194/410 (47%), Positives = 253/410 (61%), Gaps = 3/410 (0%)
Query: 19 LKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
LK+YN++T+QKE F P+ G+V MYVCG T YD HLGHAR ++FD++ RYLEH V
Sbjct: 2 LKVYNTLTKQKEEFKPLREGEVKMYVCGPTVYDYPHLGHARTYIAFDVIRRYLEHKGYTV 61
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
V NFTD+DDKII+RA + GE+P L+ R+ + +L DM L+ P PRV+DH++ I
Sbjct: 62 LMVMNFTDIDDKIIKRARETGEDPKELAERFIKIFLEDMEALKVKPADIYPRVTDHIDDI 121
Query: 139 KDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFA 198
+ I ++ AY ++F V+K P YG+LSG ++E+ + G RV K+NP DFA
Sbjct: 122 IEFIGKLKEKGYAYEGSDGIYFEVKKFPEYGKLSGVKIEDLQKGARVEPGEGKKNPEDFA 181
Query: 199 LWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQS 258
LWK AK GEP WDSPWG GRPGWHIECS MS+ YL FDIHGGG DLIFPHHENEIAQS
Sbjct: 182 LWKKAKPGEPKWDSPWGEGRPGWHIECSVMSSKYLGESFDIHGGGNDLIFPHHENEIAQS 241
Query: 259 CAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPL 318
A V YW+H G V EKMSKSLGNF TIR++ +RY P +R F++ HYRSPL
Sbjct: 242 EACFGHEWVKYWLHTGFVMVKGEKMSKSLGNFVTIRELLKRYEPEVIRFFVLQKHYRSPL 301
Query: 319 NYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMS 378
Y+ L A + + +Y TL++ VAL + + + I + + +F+ M
Sbjct: 302 EYTEEGLQHAKNNLQRLYNTLENIRVALRNAEISYTWGELEFKTYEIIREGKRKFYEAMD 361
Query: 379 DDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEV 428
DD NT+ L F+ A IN L K PK+ L KI +EV
Sbjct: 362 DDFNTAEALKAVFEVA-NAINKYLTEANK--PKESILRKALEFFKIVSEV 408
>sp|O58370|SYC_PYRHO Cysteine--tRNA ligase OS=Pyrococcus horikoshii (strain ATCC 700860
/ DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=cysS
PE=3 SV=1
Length = 476
Score = 390 bits (1001), Expect = e-107, Method: Compositional matrix adjust.
Identities = 194/424 (45%), Positives = 261/424 (61%), Gaps = 13/424 (3%)
Query: 17 LTLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKC 76
+TL+IYN++T+QKE F PI G+V MYVCG T YD HLGHAR ++FD++ RYLEH
Sbjct: 1 MTLRIYNTLTKQKEEFKPINEGEVRMYVCGPTVYDYPHLGHARTYIAFDVIRRYLEHKGY 60
Query: 77 EVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHME 136
V V NFTD+DDKIIRRA + GE+P L+ ++ + +L DM L+ P PRV++H+E
Sbjct: 61 SVLMVMNFTDIDDKIIRRAKETGEDPAKLAEKFIKVFLEDMKALKVKPADIYPRVTEHIE 120
Query: 137 QIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPAD 196
I I ++ AY V+F V+K YG+LSG +LE R G RV K+NP D
Sbjct: 121 DIIQFIERLKEKGYAYEGSDGVYFEVQKFKEYGKLSGVKLEELRKGARVEPGEGKKNPED 180
Query: 197 FALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIA 256
FALWK AK GEP W+SPWG GRPGWHIECS MS+ YL FDIHGGG DLIFPHHENEIA
Sbjct: 181 FALWKKAKPGEPKWESPWGEGRPGWHIECSVMSSKYLGESFDIHGGGNDLIFPHHENEIA 240
Query: 257 QSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRS 316
QS A V YW+H G V EKMSKSLGNF T+R++ +RY P +R F++ HYRS
Sbjct: 241 QSEACFGHEWVHYWLHTGFVMVKGEKMSKSLGNFVTVRELLQRYSPEVIRFFVLQKHYRS 300
Query: 317 PLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHAR 376
PL+YS L A + + +Y TL++ +A+ + + A + I + R +F+
Sbjct: 301 PLDYSEEGLQHAKNNLERLYNTLENIRIAMENAELAYTWDENDFKAYNSIKEARRKFYEA 360
Query: 377 MSDDLNTSHILTGAFQDALKFINSSLN--MLKKKQPKQQQLSLIESLRKIENEVKEVLRI 434
M DD NT+ L F+ +++++N + + ++PK+ LRK + V I
Sbjct: 361 MDDDFNTAEALKAVFE-----VSNAINKYITEAEKPKES------VLRKAWEFFRTVGEI 409
Query: 435 LGLL 438
G+
Sbjct: 410 FGIF 413
>sp|Q747A2|SYC_GEOSL Cysteine--tRNA ligase OS=Geobacter sulfurreducens (strain ATCC
51573 / DSM 12127 / PCA) GN=cysS PE=3 SV=1
Length = 481
Score = 389 bits (998), Expect = e-107, Method: Compositional matrix adjust.
Identities = 201/431 (46%), Positives = 265/431 (61%), Gaps = 14/431 (3%)
Query: 17 LTLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKC 76
+ L++YN+++ KE F + G+V MYVCGVT YD H+GHARA V FD++YRYL H
Sbjct: 1 MALRVYNTLSGTKEDFVTLEPGRVKMYVCGVTVYDHCHIGHARANVVFDMIYRYLRHAGY 60
Query: 77 EVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHME 136
EVTYVRN+TDVDDKII RAN G +S R+ E+ DMA L PTYQP+ ++H+
Sbjct: 61 EVTYVRNYTDVDDKIINRANKEGVPFNVISERFIAEFDRDMAALGLDLPTYQPKATEHIA 120
Query: 137 QIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPAD 196
++ +I +++ AY +GDV+F+VE Y +LS + LE +AG R+ V +KR+P D
Sbjct: 121 EMIQVIERLVAKGFAYAADGDVYFSVEAFDQYLKLSKRNLEEMQAGARIEVGEKKRHPMD 180
Query: 197 FALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIA 256
FALWK +K GEP WDSPWG GRPGWHIECSAMS YL FDIHGGG DL+FPHHENEIA
Sbjct: 181 FALWKGSKPGEPYWDSPWGQGRPGWHIECSAMSMKYLGETFDIHGGGKDLVFPHHENEIA 240
Query: 257 QSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRS 316
QS AA YW+HNG V N EKMSKSLGNFFTI+++ E Y LR FL+SAHYRS
Sbjct: 241 QSEAANGKPFARYWIHNGFVNINAEKMSKSLGNFFTIKEVLESYDAEVLRFFLLSAHYRS 300
Query: 317 PLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHAR 376
P+++S L A+ + IY L + A++ + RI+ + L F
Sbjct: 301 PIDFSDQNLKEAAAGLERIYNALAGIDEAVAA--DGTGAGRIDEELAEKAAGLPTRFREA 358
Query: 377 MSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG 436
M DD NT+ L F D ++ +N L + +++ S R+ + V +LG
Sbjct: 359 MDDDFNTAQALGYVF-DLVRAVNRVL------AEGEIDRAVLASAREA---IDRVGAVLG 408
Query: 437 LLP--PGAYSE 445
L PGA+ E
Sbjct: 409 LFTSEPGAFVE 419
>sp|Q5JD45|SYC_PYRKO Cysteine--tRNA ligase OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=cysS PE=3 SV=1
Length = 476
Score = 387 bits (995), Expect = e-107, Method: Compositional matrix adjust.
Identities = 193/412 (46%), Positives = 256/412 (62%), Gaps = 3/412 (0%)
Query: 17 LTLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKC 76
+ +KIYN++T+QKE F P+ G+V MYVCG T YD +H+GHAR ++FD++ RYLEH
Sbjct: 1 MGIKIYNTLTRQKEEFKPLREGEVRMYVCGPTVYDYTHIGHARTYIAFDVIRRYLEHKGY 60
Query: 77 EVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHME 136
V V NFTD+DDKII+RAN+ GE+P L+ ++ + +L DM L+ P PRV++H++
Sbjct: 61 TVLMVMNFTDIDDKIIKRANETGEDPKELAEKFLKYFLEDMKALKVKPADIYPRVTEHIQ 120
Query: 137 QIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPAD 196
I D I ++ AY V+F V K +YG+LS +LE+ G RV K+NP D
Sbjct: 121 DIIDFIRKLQEKGYAYEGSDGVYFEVRKFKDYGKLSKVKLEDLVKGARVEPGEGKKNPED 180
Query: 197 FALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIA 256
FALWK AK GEP W+SPWG GRPGWHIECS MS YL FDIHGGG DLIFPHHENEIA
Sbjct: 181 FALWKKAKPGEPKWESPWGEGRPGWHIECSTMSTKYLGESFDIHGGGSDLIFPHHENEIA 240
Query: 257 QSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRS 316
Q+ A V YWMH G + N EKMSKSLGNF TIR+ ERY P +R F++ HYRS
Sbjct: 241 QTEACTGHEWVRYWMHTGFLMVNGEKMSKSLGNFVTIREALERYDPEVIRLFVLQRHYRS 300
Query: 317 PLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHAR 376
PL+Y+ L+ A + + +Y TL++ VA+ + K A + I R +F+
Sbjct: 301 PLDYTEEGLEHAKNNLERLYNTLENIRVAMERAEISFKWGEEEFEAYEAIRDGRKKFYDA 360
Query: 377 MSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEV 428
M DD NT+ L F+ + IN L ++K PK+ L K+ +EV
Sbjct: 361 MDDDFNTAEALKAVFEVS-NAINRYLTQVEK--PKESILRKAWEFFKMVSEV 409
>sp|C5A739|SYC_THEGJ Cysteine--tRNA ligase OS=Thermococcus gammatolerans (strain DSM
15229 / JCM 11827 / EJ3) GN=cysS PE=3 SV=1
Length = 476
Score = 387 bits (994), Expect = e-107, Method: Compositional matrix adjust.
Identities = 196/422 (46%), Positives = 261/422 (61%), Gaps = 9/422 (2%)
Query: 17 LTLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKC 76
+ ++IYN++T+QKE F P+ G+V MYVCG T YD HLGHAR ++FD++ RYLEH
Sbjct: 1 MAIRIYNTLTRQKEEFKPLHEGEVRMYVCGPTVYDYPHLGHARTYIAFDVIRRYLEHKGY 60
Query: 77 EVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHME 136
V V NFTD+DDKII+RAN+ GE+P L+ ++ + +L DM L+ P PRV++HM+
Sbjct: 61 TVLMVMNFTDIDDKIIKRANETGEDPKELAEKFLRIFLEDMKALKVKPADIYPRVTEHMQ 120
Query: 137 QIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPAD 196
I I ++ AY V+F V K +YG+LS +LE+ G RV KRNP D
Sbjct: 121 DIISFIKKLQEKGYAYEGSDGVYFEVRKFKDYGKLSKIKLEDLVKGARVEPGEGKRNPED 180
Query: 197 FALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIA 256
FALWK AK GEP W+SPWG GRPGWHIECS MS+ YL FDIHGGG DLIFPHHENEIA
Sbjct: 181 FALWKKAKPGEPKWESPWGEGRPGWHIECSTMSSKYLGESFDIHGGGNDLIFPHHENEIA 240
Query: 257 QSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRS 316
QS A V YWMH G + N EKMSKSLGNF T+R++ +RY+P +R F++ HYRS
Sbjct: 241 QSEACFGHEWVHYWMHTGFLMVNGEKMSKSLGNFVTVRELLKRYNPEVIRLFVLQRHYRS 300
Query: 317 PLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHAR 376
PL+YS ++ A + + +Y TL++ VA+S + + A + I R +F+
Sbjct: 301 PLDYSEEGIEHAKNNLERLYNTLENIRVAMSKAEISFRWDEPEFRAYEAIRDARKKFYEA 360
Query: 377 MSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG 436
M DD NT+ L F+ + IN L ++K PK+ LRK K+V + G
Sbjct: 361 MDDDFNTAEALKAVFEVS-NAINRYLTEVEK--PKES------ILRKAWEFFKDVGEVFG 411
Query: 437 LL 438
L
Sbjct: 412 LF 413
>sp|Q31H54|SYC_THICR Cysteine--tRNA ligase OS=Thiomicrospira crunogena (strain XCL-2)
GN=cysS PE=3 SV=1
Length = 456
Score = 386 bits (992), Expect = e-106, Method: Compositional matrix adjust.
Identities = 204/433 (47%), Positives = 272/433 (62%), Gaps = 35/433 (8%)
Query: 17 LTLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKC 76
+ LKIYN+ T+QKE FTPI KVG+YVCGVT YD H+GHAR V FD + R+L L
Sbjct: 1 MALKIYNTETRQKETFTPIQPNKVGLYVCGVTVYDYCHVGHARVMVVFDTVVRHLRSLGY 60
Query: 77 EVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHME 136
+VTYVRN TD+DDKII+RA + E+ SL++R+ D L L P +P+ +++M+
Sbjct: 61 DVTYVRNITDIDDKIIQRALENKESIQSLTSRFIDAMHEDEKALNVLRPDMEPKATEYMD 120
Query: 137 QIKDMITQIINNDCAYVVE-GDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPA 195
+I+ MI+ +I D AY E GDV+F V+ +YGRLSG+ +E +G RV ++S K++P
Sbjct: 121 EIETMISTLIEKDFAYPAENGDVYFHVKADDDYGRLSGKNIEELDSGSRVEINSVKKDPL 180
Query: 196 DFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEI 255
DF LWKA+K EP+W SPWG GRPGWHIECSAMS L + FDIHGGG+DL FPHHENEI
Sbjct: 181 DFVLWKASKENEPAWQSPWGDGRPGWHIECSAMSTKCLGNHFDIHGGGLDLSFPHHENEI 240
Query: 256 AQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYR 315
AQS A + V+ WMH G V ++EKMSKSLGNFFTIR++ ++YHP +R+FL+++HYR
Sbjct: 241 AQSECATGEHYVNSWMHCGFVRIDDEKMSKSLGNFFTIREVLKQYHPEVIRYFLLASHYR 300
Query: 316 SPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHA 375
SP+NYS LD A +V +Y L+ L P + AE +KL EF A
Sbjct: 301 SPVNYSEENLDVAKASVGRLYSALE-----LVPADQ----------AEPAESKLEAEFMA 345
Query: 376 RMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRIL 435
M+DD NT + F+ L K+ KQ+ L L+K+ N++
Sbjct: 346 AMNDDFNTPQAMAVLFE------------LAKEVNKQKSPGLAALLKKLANQI------- 386
Query: 436 GLLPPGAYSEVKT 448
GLL A S K+
Sbjct: 387 GLLEQTAESFFKS 399
>sp|Q82Y45|SYC_NITEU Cysteine--tRNA ligase OS=Nitrosomonas europaea (strain ATCC 19718 /
NBRC 14298) GN=cysS PE=3 SV=1
Length = 465
Score = 386 bits (992), Expect = e-106, Method: Compositional matrix adjust.
Identities = 196/380 (51%), Positives = 252/380 (66%), Gaps = 20/380 (5%)
Query: 19 LKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
LKIY+++T+ + F P+ G+V MYVCG+T YD HLGHAR V FD + R+L+ L +V
Sbjct: 2 LKIYDTLTRSRREFIPLTPGEVRMYVCGMTVYDYCHLGHARVLVVFDSVVRWLQTLGYKV 61
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
YVRN TDVDDKIIRRA + E +L+ RY Q D L + P+++PR +++++ +
Sbjct: 62 IYVRNITDVDDKIIRRALENHEPFSALTARYIQAMEEDAMALGVISPSFEPRATEYVDSM 121
Query: 139 KDMITQIINNDCAYVVE-GDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADF 197
MI ++N + AYV GDVF+ V + P YG+LSG+ L++ RAGERV +D+ KR+P DF
Sbjct: 122 IAMIESLLNRELAYVASNGDVFYDVRRFPGYGKLSGKSLDDLRAGERVEIDTNKRDPLDF 181
Query: 198 ALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257
LWKAAK EPSWDSPWG GRPGWHIECSAMS HYL +FDIHGGG DL FPHHENEIAQ
Sbjct: 182 VLWKAAKPDEPSWDSPWGKGRPGWHIECSAMSEHYLGDQFDIHGGGQDLQFPHHENEIAQ 241
Query: 258 SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSP 317
S S+V+YWMHNG V +NEKMSKSLGNFFT+R++ RY P +R F++ AHYRSP
Sbjct: 242 SEGVHGHSHVNYWMHNGFVRVDNEKMSKSLGNFFTVREVLTRYQPEVVRFFIVRAHYRSP 301
Query: 318 LNYSVLQLDSASDAVFYIYQTL------QDCEVALSPFQEHGKTARINPAAEDCINKLRD 371
LNYS L+ A A+ +Y L QD EVA TA I+ E+ + R
Sbjct: 302 LNYSDAHLNDARSALERLYTVLKNHAPSQDSEVA---------TAVID--WENNVYARR- 349
Query: 372 EFHARMSDDLNTSHILTGAF 391
F + M+DD NT + F
Sbjct: 350 -FMSAMNDDFNTPEAVAVLF 368
>sp|Q72BQ5|SYC_DESVH Cysteine--tRNA ligase OS=Desulfovibrio vulgaris (strain
Hildenborough / ATCC 29579 / NCIMB 8303) GN=cysS PE=3
SV=1
Length = 485
Score = 386 bits (992), Expect = e-106, Method: Compositional matrix adjust.
Identities = 200/431 (46%), Positives = 269/431 (62%), Gaps = 7/431 (1%)
Query: 19 LKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
++IYNS++++KELFTP V GKV MYVCG+TAYDL H+GHAR+AV FD+L RYL H +V
Sbjct: 1 MQIYNSLSRRKELFTPAVPGKVNMYVCGITAYDLCHIGHARSAVVFDVLVRYLRHTGLDV 60
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
T+ RNFTDVDDKII+RAN+ G ++ +Y + DM L L +P+ + H+ ++
Sbjct: 61 TFARNFTDVDDKIIKRANEEGLTSQQVAEKYIDTFYEDMDRLNVLRADIEPKATGHILEM 120
Query: 139 KDMITQIINNDCAYVV-EGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADF 197
+ ++I AY GDV+F V P YG+LSG+ +++ R+G RVA K +P DF
Sbjct: 121 IALCEKLIAKGKAYATPSGDVYFRVRSFPEYGKLSGRDIDDMRSGARVAPGEEKEDPLDF 180
Query: 198 ALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257
ALWKAAK GEPSW SPWG GRPGWHIECSAMS ++ DIHGGG DLIFPHHENEIAQ
Sbjct: 181 ALWKAAKPGEPSWTSPWGEGRPGWHIECSAMSEKHMPLPLDIHGGGQDLIFPHHENEIAQ 240
Query: 258 SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSP 317
+ AA V YWMHNG V + EKMSKSLGNF TIR I E Y P LR FL++ HYRSP
Sbjct: 241 TEAALDKPFVRYWMHNGFVQVDAEKMSKSLGNFKTIRDILEGYLPEVLRFFLLTKHYRSP 300
Query: 318 LNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAE-DCINKLRDEFHAR 376
++++ +D A ++ IY+ L S + + AE D +++ DE
Sbjct: 301 IDFTFDSMDEAEKSLKRIYEALSLARTERSRSKWSATPLPADVTAEFDTLDRAFDE---A 357
Query: 377 MSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG 436
+ DDLNT+ L F ++ +N L K + + L+L+E L + + +VL + G
Sbjct: 358 LEDDLNTAAALGHVFG-TIRLVNRLLED-KNLRKSAETLALLERLDGLVAKWMKVLGVFG 415
Query: 437 LLPPGAYSEVK 447
P S++K
Sbjct: 416 REPEAFLSDLK 426
>sp|A3QFX9|SYC_SHELP Cysteine--tRNA ligase OS=Shewanella loihica (strain ATCC BAA-1088 /
PV-4) GN=cysS PE=3 SV=1
Length = 459
Score = 386 bits (991), Expect = e-106, Method: Compositional matrix adjust.
Identities = 199/426 (46%), Positives = 262/426 (61%), Gaps = 17/426 (3%)
Query: 19 LKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
LK+YNS+T+QKE F PI GKVGMYVCGVT YDL H+GH R V+FD++ RYL ++ +V
Sbjct: 2 LKLYNSLTRQKEEFKPIQPGKVGMYVCGVTIYDLCHIGHGRTFVAFDMIVRYLRYIGYDV 61
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
+ RN TDVDDKII+RA + GE+ +L+ R QE D L P ++PR + HM +I
Sbjct: 62 NFHRNITDVDDKIIKRATENGESCDALTERLTQEMYHDFDALNMKRPDFEPRATQHMPEI 121
Query: 139 KDMITQIINNDCAYVVE-GDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADF 197
+M+ +++ D AY+ + GDV F+V P YGRLSGQ L+ +AG RV VD KR+P DF
Sbjct: 122 IEMVERLLERDHAYIADNGDVLFSVASFPEYGRLSGQNLDQLQAGARVEVDENKRDPMDF 181
Query: 198 ALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257
LWK +K GEP+WDSPWGPGRPGWHIECSAM++ +L FDIHGGG DL FPHHENEIAQ
Sbjct: 182 VLWKMSKPGEPTWDSPWGPGRPGWHIECSAMNSKHLGEHFDIHGGGSDLQFPHHENEIAQ 241
Query: 258 SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSP 317
SC A V+YWMH G V + EKMSKSL NFFTIR + Y +R+FL+S HYRS
Sbjct: 242 SCCAHDTPYVNYWMHTGMVMVDKEKMSKSLNNFFTIRDVLAHYDASTVRYFLLSGHYRSQ 301
Query: 318 LNYSVLQLDSASDAVFYIYQTLQ--DCEVALSPFQEHGKTARINPAAEDCINK------- 368
LNYS L A A+ +Y L+ D V +P E+ A+ A +D N
Sbjct: 302 LNYSEDNLKQAKAALERLYTALKGLDLSVEAAPASEY--VAKFKEAMDDDFNTPEAYSVL 359
Query: 369 --LRDEFHARMSDDLNTSHILTGAFQ---DALKFINSSLNMLKKKQPKQQQLSLIESLRK 423
+ E + DDL + L + + D L + ++ K + +++ IE+L
Sbjct: 360 FDMAREINRLKVDDLAAASALGVSMKQLGDVLGILEQDVDGFFKGEGSDDEVAQIEALIA 419
Query: 424 IENEVK 429
N +
Sbjct: 420 ERNRAR 425
>sp|Q2Y7U5|SYC_NITMU Cysteine--tRNA ligase OS=Nitrosospira multiformis (strain ATCC
25196 / NCIMB 11849) GN=cysS PE=3 SV=1
Length = 464
Score = 386 bits (991), Expect = e-106, Method: Compositional matrix adjust.
Identities = 191/385 (49%), Positives = 245/385 (63%), Gaps = 14/385 (3%)
Query: 19 LKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
LKI+NS+ ++K+ F P+ GKV +YVCG+T YD HLGHAR V FD++ R+ + +V
Sbjct: 2 LKIHNSLAREKQEFIPLTPGKVKVYVCGMTVYDYCHLGHARVMVVFDMVQRWFRANRFDV 61
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
TYVRN TD+DDKIIRRA + E+ +L+ R+ Q D A L PP+++PR + H+E +
Sbjct: 62 TYVRNITDIDDKIIRRAQENKESIEALTARFIQAMEEDAAALGVEPPSWEPRATRHVEDM 121
Query: 139 KDMITQIINNDCAY-VVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADF 197
MI +++ AY GDV++AV + P YG+LSG+ L+ RAGERV VD K +P DF
Sbjct: 122 IAMIQVLVDKKLAYPASNGDVYYAVHRFPGYGKLSGKSLDELRAGERVIVDPHKNDPLDF 181
Query: 198 ALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257
LWKAAK GEP WDSPWGPGRPGWHIECSAM HYL FDIHGGG DL FPHHENEIAQ
Sbjct: 182 VLWKAAKPGEPQWDSPWGPGRPGWHIECSAMGEHYLGEHFDIHGGGQDLQFPHHENEIAQ 241
Query: 258 SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSP 317
S A V+YWMHNG V N+EKMSKSLGNFFT+R+I + P +R F++ AHYRSP
Sbjct: 242 SEGAHGHPFVNYWMHNGFVRVNDEKMSKSLGNFFTVREILAHFQPEVVRFFILRAHYRSP 301
Query: 318 LNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARM 377
LNY+ +QL+ A A+ +Y L+ EV + D + F M
Sbjct: 302 LNYADMQLEDAGRALDRLYTALKGIEVH-------------DEVEIDWDDPYASRFREAM 348
Query: 378 SDDLNTSHILTGAFQDALKFINSSL 402
+DD NT L F A + + L
Sbjct: 349 NDDFNTPEALAVLFDLATEVNKTRL 373
>sp|A1S4X2|SYC_SHEAM Cysteine--tRNA ligase OS=Shewanella amazonensis (strain ATCC
BAA-1098 / SB2B) GN=cysS PE=3 SV=1
Length = 459
Score = 386 bits (991), Expect = e-106, Method: Compositional matrix adjust.
Identities = 203/422 (48%), Positives = 260/422 (61%), Gaps = 26/422 (6%)
Query: 19 LKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
LKIYNS+++QKE F PI GK+GMYVCGVT YDL H+GH R V FD++ RYL + EV
Sbjct: 2 LKIYNSISRQKEEFKPIQPGKIGMYVCGVTIYDLCHIGHGRTFVCFDMIVRYLRYRGYEV 61
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
Y RN TDVDDKII+RAN+ GE+ SL+ R E D L + P+++PR + H+++I
Sbjct: 62 NYQRNITDVDDKIIKRANENGESCDSLTERLIGEMHADFDALNMVRPSFEPRATLHIDEI 121
Query: 139 KDMITQIINNDCAYVV-EGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADF 197
DM+T++++ AYV +GDV F V YGRLSGQ LE +AG RV VD KRNP DF
Sbjct: 122 IDMVTRLLDRGHAYVAADGDVLFDVSSYAAYGRLSGQDLEQLQAGARVEVDENKRNPMDF 181
Query: 198 ALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257
LWK +K GEP+WDSPWGPGRPGWHIECSAM++ +L FDIHGGG DL FPHHENEIAQ
Sbjct: 182 VLWKMSKPGEPTWDSPWGPGRPGWHIECSAMNSKHLGLHFDIHGGGSDLQFPHHENEIAQ 241
Query: 258 SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSP 317
SC A V+ WMH G V + EKMSKSLGNFFTIR + Y +R+FL+S HYRS
Sbjct: 242 SCCAHDTPYVNTWMHTGMVMVDREKMSKSLGNFFTIRDVLAHYDAQTVRYFLLSGHYRSQ 301
Query: 318 LNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARM 377
LNYS L A ++ +Y L+ ++ + A++ +++ F A M
Sbjct: 302 LNYSEDNLKQARASLERMYTALKGLDLTVEA-----------AGADEFVSR----FMAAM 346
Query: 378 SDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGL 437
DD NT + F D ++ IN + K ++ L E+ EVL IL
Sbjct: 347 DDDFNTPEAYSVLF-DMVREIN---------RLKTSDMAAASQLGVALKELAEVLGILSS 396
Query: 438 LP 439
P
Sbjct: 397 TP 398
>sp|A9KWH4|SYC_SHEB9 Cysteine--tRNA ligase OS=Shewanella baltica (strain OS195) GN=cysS
PE=3 SV=1
Length = 459
Score = 385 bits (990), Expect = e-106, Method: Compositional matrix adjust.
Identities = 206/423 (48%), Positives = 262/423 (61%), Gaps = 33/423 (7%)
Query: 19 LKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
LKIYNS+T+QK+ F PI GK+GMYVCGVT YDL H+GH R VSFD++ RYL + EV
Sbjct: 2 LKIYNSITRQKQEFKPITPGKIGMYVCGVTIYDLCHIGHGRTFVSFDMIVRYLRYAGYEV 61
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
+ RN TDVDDKII+RAN+ E+ +L+ R E D L L P ++PR + H+ +I
Sbjct: 62 NFQRNITDVDDKIIKRANENNESCEALTERLIGEMHQDFDALNMLRPDFEPRATLHIAEI 121
Query: 139 KDMITQIINNDCAYVV-EGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADF 197
DM+ ++ AYV +GDV F+V P+YGRLSGQ L+ +AG RV VD K+NP DF
Sbjct: 122 IDMVELLLARGHAYVASDGDVLFSVASYPDYGRLSGQNLDQLQAGARVEVDETKQNPMDF 181
Query: 198 ALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257
LWK +K GEP+W+SPWGPGRPGWHIECSAM++ +L FDIHGGG DL FPHHENEIAQ
Sbjct: 182 VLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSKHLGLHFDIHGGGSDLQFPHHENEIAQ 241
Query: 258 SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSP 317
SC A V+YWMH G V + EKMSKSLGNFFTIR + Y +R+FL+S HYRS
Sbjct: 242 SCCAHDTPYVNYWMHTGMVMVDREKMSKSLGNFFTIRDVLGHYDAETVRYFLLSGHYRSQ 301
Query: 318 LNYSVLQLDSASDAVFYIYQTLQDCE--VALSPFQEHGKTARINPAAEDCINKLRDEFHA 375
LNYS L A A+ +Y ++D + VA +P AE+ I K F A
Sbjct: 302 LNYSEDNLKQARSALERLYTAIKDVDLTVAAAP-------------AEEFIAK----FKA 344
Query: 376 RMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRIL 435
M DD NT + F D ++ IN L + Q ++L K++ +L
Sbjct: 345 AMDDDFNTPEAYSVLF-DMVREIN-RLKLTDMAQASALAVTL-----------KQLADVL 391
Query: 436 GLL 438
GLL
Sbjct: 392 GLL 394
>sp|C6E7P0|SYC_GEOSM Cysteine--tRNA ligase OS=Geobacter sp. (strain M21) GN=cysS PE=3
SV=1
Length = 480
Score = 385 bits (990), Expect = e-106, Method: Compositional matrix adjust.
Identities = 200/421 (47%), Positives = 262/421 (62%), Gaps = 13/421 (3%)
Query: 17 LTLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKC 76
+ L++YN++T KE F PI GKVGMYVCGVT YD H+GHARA V FD++YR+L
Sbjct: 1 MPLRVYNTLTGSKEEFVPINPGKVGMYVCGVTVYDHCHIGHARANVVFDMIYRHLLSKGL 60
Query: 77 EVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHME 136
EVTYVRN+TD+DDKII RAN G +S R+ +E+ DMA L PT+QP+ ++H+
Sbjct: 61 EVTYVRNYTDIDDKIINRANRDGVAYNEISERFIKEFDNDMARLMLQLPTFQPKATEHIP 120
Query: 137 QIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPAD 196
+I +++ ++I+ AY DVF+ V++ Y +LS + LE+ +AG R+ VD RK +P D
Sbjct: 121 EIINLVQKLIDKGFAYQSGSDVFYRVDRFEGYLKLSKRNLEDMQAGARIDVDERKEHPMD 180
Query: 197 FALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIA 256
FALWK AK GEP W+SPWG GRPGWHIECSAMS +L DIHGGG DLIFPHHENEIA
Sbjct: 181 FALWKGAKPGEPYWESPWGQGRPGWHIECSAMSTKFLGETLDIHGGGKDLIFPHHENEIA 240
Query: 257 QSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRS 316
QS AA V YW+HNG V N+EKMSKSLGNFFTI++I E Y LR FL+SAHYRS
Sbjct: 241 QSEAASGKPFVKYWLHNGFVNINSEKMSKSLGNFFTIKEILESYDAEVLRFFLLSAHYRS 300
Query: 317 PLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHAR 376
P+++S L A + IY+ L + L+ H N + + F
Sbjct: 301 PIDFSDQNLKEAELGLERIYKALAGIDERLAS-GAHTPADADNTEFAEKVAGFAGRFGDA 359
Query: 377 MSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG 436
M DD NT+ L G D ++ IN L L+E K++ EV ++ +LG
Sbjct: 360 MDDDFNTALAL-GHLFDLVRVINREL--------PTASTGLLE---KVKAEVAKMAAVLG 407
Query: 437 L 437
+
Sbjct: 408 I 408
>sp|Q1H417|SYC_METFK Cysteine--tRNA ligase OS=Methylobacillus flagellatus (strain KT /
ATCC 51484 / DSM 6875) GN=cysS PE=3 SV=1
Length = 455
Score = 385 bits (990), Expect = e-106, Method: Compositional matrix adjust.
Identities = 184/327 (56%), Positives = 232/327 (70%), Gaps = 1/327 (0%)
Query: 19 LKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
LKIYN++ + K+ F+PI+ GKV MYVCG+T YD HLGHAR V FD++ R+L EV
Sbjct: 2 LKIYNTLARAKQTFSPIIPGKVSMYVCGMTVYDYCHLGHARVMVVFDMVNRWLRSSGYEV 61
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
TYVRN TD+DDKII RAN+ GE +L++R+ D A L P +PR +D++ ++
Sbjct: 62 TYVRNITDIDDKIIARANENGETINALTDRFIAAMNEDAARLGVWRPDLEPRATDYIHEM 121
Query: 139 KDMITQIINNDCAYVVE-GDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADF 197
MI +I AY + GDV++AV +YG+LSG+ LE+ RAGERV VD+ KR+P DF
Sbjct: 122 IAMIVALIEKHHAYAADNGDVYYAVSSFASYGKLSGKSLEDLRAGERVEVDAHKRDPMDF 181
Query: 198 ALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257
LWKAAK GEPSWDSPWGPGRPGWHIECSAM A +L FDIHGGG DL FPHHENEIAQ
Sbjct: 182 VLWKAAKPGEPSWDSPWGPGRPGWHIECSAMGARHLGPHFDIHGGGQDLQFPHHENEIAQ 241
Query: 258 SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSP 317
S A + V+YWMHNG + ++EKMSKSLGNFFTIR++ E+Y +R F++ AHYRSP
Sbjct: 242 SEGAHGCTFVNYWMHNGFIRVDDEKMSKSLGNFFTIREVLEKYDAEVVRFFILRAHYRSP 301
Query: 318 LNYSVLQLDSASDAVFYIYQTLQDCEV 344
LNYS LD A A+ +Y TL+ E+
Sbjct: 302 LNYSSHHLDDAKQALTRLYNTLRGREL 328
>sp|Q9UYV2|SYC_PYRAB Cysteine--tRNA ligase OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=cysS PE=3 SV=1
Length = 477
Score = 385 bits (989), Expect = e-106, Method: Compositional matrix adjust.
Identities = 187/414 (45%), Positives = 261/414 (63%), Gaps = 7/414 (1%)
Query: 17 LTLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKC 76
+ +K+YN++T++KE P+ G+V MYVCG T YD HLGHAR ++FD++ RYLEH
Sbjct: 1 MGIKVYNTLTRKKEELKPLRDGEVRMYVCGPTVYDYPHLGHARTYIAFDVIRRYLEHRGF 60
Query: 77 EVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHME 136
V V NFTD+DDKII+RA + GE+P L+ R+ + +L DM L+ P PRV++H++
Sbjct: 61 TVLMVMNFTDIDDKIIKRAQETGEDPGKLAERFIKVFLEDMNALKVKPADIYPRVTEHID 120
Query: 137 QIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPAD 196
I + I ++ AY V+F V+K +YG+LSG ++E R G RV K+NP D
Sbjct: 121 DIIEFIKKLKEKGYAYEGSDGVYFEVQKFKDYGKLSGVKIEELRKGARVEPGEGKKNPED 180
Query: 197 FALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIA 256
FALWK AK GEP WDSPWG GRPGWHIECS MS+ YL FDIHGGG DLIFPHHENEIA
Sbjct: 181 FALWKKAKPGEPKWDSPWGEGRPGWHIECSVMSSKYLGESFDIHGGGNDLIFPHHENEIA 240
Query: 257 QSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRS 316
QS A V YW+H G V EKMSKSLGNF T+R++ +RY P +R F++ HYRS
Sbjct: 241 QSEACFGHEWVRYWLHTGFVMVKGEKMSKSLGNFVTVRELLQRYSPEVIRLFVLQKHYRS 300
Query: 317 PLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHAR 376
PL+Y+ L A + + +Y TL++ +A+ + K + + A + I + R +F+
Sbjct: 301 PLDYTEEGLQHAKNNLERLYNTLENIRIAMRNAELSYKWSEKDFEAYEAIREARKKFYDA 360
Query: 377 MSDDLNTSHILTGAFQDALKFINSSLN--MLKKKQPKQQQLSLIESLRKIENEV 428
M DD NT+ L F+ +++++N +L+ +PK+ L K+ +EV
Sbjct: 361 MDDDFNTAEALKAVFE-----VSNAINKYILEVDKPKESILRKALEFFKVVSEV 409
>sp|A0KYM2|SYC_SHESA Cysteine--tRNA ligase OS=Shewanella sp. (strain ANA-3) GN=cysS PE=3
SV=1
Length = 461
Score = 385 bits (989), Expect = e-106, Method: Compositional matrix adjust.
Identities = 193/382 (50%), Positives = 248/382 (64%), Gaps = 17/382 (4%)
Query: 19 LKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
LKIYNS+T+QK+ F PI GKVGMYVCGVT YDL H+GH R VSFD++ RYL + EV
Sbjct: 4 LKIYNSITRQKQEFKPITPGKVGMYVCGVTVYDLCHIGHGRTFVSFDMIVRYLRYAGYEV 63
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
+ RN TD+DDKII+RAN+ E+ +L++R E D L + P ++PR + H+ +I
Sbjct: 64 NFQRNITDIDDKIIKRANENQEDCNTLTDRLIGEMHKDFDALNMIRPDFEPRATLHIAEI 123
Query: 139 KDMITQIINNDCAYVV-EGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADF 197
DM+ +++ AYV +GDV F+V P YGRLSGQ LE +AG RV VD K+NP DF
Sbjct: 124 IDMVERLLARGHAYVAADGDVLFSVASFPEYGRLSGQNLEQLQAGARVEVDDNKQNPMDF 183
Query: 198 ALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257
LWK +K GEP+W+SPWGPGRPGWHIECSAM++ +L FDIHGGG DL FPHHENEIAQ
Sbjct: 184 VLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSKHLGLHFDIHGGGSDLQFPHHENEIAQ 243
Query: 258 SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSP 317
SC A V+YWMH G V + EKMSKSLGNFFTIR + Y +R+FL+S HYRS
Sbjct: 244 SCCAHDTPYVNYWMHTGMVMVDREKMSKSLGNFFTIRDVLGHYDAETVRYFLLSGHYRSQ 303
Query: 318 LNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARM 377
+NYS L A A+ +Y ++D ++ ++ AE+ + K F A M
Sbjct: 304 INYSEENLKQARAALERLYTAIKDVDLTVTA-----------APAEEFVAK----FKAAM 348
Query: 378 SDDLNTSHILTGAFQDALKFIN 399
DD NT + F D ++ IN
Sbjct: 349 DDDFNTPEAYSVLF-DMVREIN 369
>sp|B8E5F2|SYC_SHEB2 Cysteine--tRNA ligase OS=Shewanella baltica (strain OS223) GN=cysS
PE=3 SV=1
Length = 459
Score = 385 bits (989), Expect = e-106, Method: Compositional matrix adjust.
Identities = 202/421 (47%), Positives = 261/421 (61%), Gaps = 29/421 (6%)
Query: 19 LKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
LKIYNS+T+QK+ F PI GK+GMYVCGVT YDL H+GH R VSFD++ RYL + EV
Sbjct: 2 LKIYNSITRQKQEFKPITPGKIGMYVCGVTIYDLCHIGHGRTFVSFDMIVRYLRYAGYEV 61
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
+ RN TDVDDKII+RAN+ E+ +L+ R E D L L P ++PR + H+ +I
Sbjct: 62 NFQRNITDVDDKIIKRANENNESCEALTERLIGEMHQDFDALNMLRPDFEPRATLHIAEI 121
Query: 139 KDMITQIINNDCAYVV-EGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADF 197
DM+ ++ AYV +GDV F+V P+YGRLSGQ L+ +AG RV VD K+NP DF
Sbjct: 122 IDMVELLLARGHAYVASDGDVLFSVASYPDYGRLSGQNLDQLQAGARVEVDETKQNPMDF 181
Query: 198 ALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257
LWK +K GEP+W+SPWGPGRPGWHIECSAM++ +L FDIHGGG DL FPHHENEIAQ
Sbjct: 182 VLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSKHLGLHFDIHGGGSDLQFPHHENEIAQ 241
Query: 258 SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSP 317
SC A V+YWMH G V + EKMSKSLGNFFTIR + Y +R+FL+S HYRS
Sbjct: 242 SCCAHDTPYVNYWMHTGMVMVDREKMSKSLGNFFTIRDVLGHYDAETVRYFLLSGHYRSQ 301
Query: 318 LNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARM 377
LNYS L A A+ +Y ++D ++ ++ AE+ + K F A M
Sbjct: 302 LNYSEDNLKQARSALERLYTAIKDVDLTVAA-----------APAEEFVAK----FKAAM 346
Query: 378 SDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGL 437
DD NT + F D ++ IN L + Q ++L K++ +LGL
Sbjct: 347 DDDFNTPEAYSVLF-DMVREIN-RLKLTDMAQASALAVTL-----------KQLADVLGL 393
Query: 438 L 438
L
Sbjct: 394 L 394
>sp|A6WLP8|SYC_SHEB8 Cysteine--tRNA ligase OS=Shewanella baltica (strain OS185) GN=cysS
PE=3 SV=1
Length = 459
Score = 385 bits (989), Expect = e-106, Method: Compositional matrix adjust.
Identities = 202/421 (47%), Positives = 261/421 (61%), Gaps = 29/421 (6%)
Query: 19 LKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
LKIYNS+T+QK+ F PI GK+GMYVCGVT YDL H+GH R VSFD++ RYL + EV
Sbjct: 2 LKIYNSITRQKQEFKPITPGKIGMYVCGVTIYDLCHIGHGRTFVSFDMIVRYLRYAGYEV 61
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
+ RN TDVDDKII+RAN+ E+ +L+ R E D L L P ++PR + H+ +I
Sbjct: 62 NFQRNITDVDDKIIKRANENNESCEALTERLIGEMHQDFDALNMLRPDFEPRATLHIAEI 121
Query: 139 KDMITQIINNDCAYVV-EGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADF 197
DM+ ++ AYV +GDV F+V P+YGRLSGQ L+ +AG RV VD K+NP DF
Sbjct: 122 IDMVELLLARGHAYVASDGDVLFSVASYPDYGRLSGQNLDQLQAGARVEVDETKQNPMDF 181
Query: 198 ALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257
LWK +K GEP+W+SPWGPGRPGWHIECSAM++ +L FDIHGGG DL FPHHENEIAQ
Sbjct: 182 VLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSKHLGLHFDIHGGGSDLQFPHHENEIAQ 241
Query: 258 SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSP 317
SC A V+YWMH G V + EKMSKSLGNFFTIR + Y +R+FL+S HYRS
Sbjct: 242 SCCAHDTPYVNYWMHTGMVMVDREKMSKSLGNFFTIRDVLGHYDAETVRYFLLSGHYRSQ 301
Query: 318 LNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARM 377
LNYS L A A+ +Y ++D ++ ++ AE+ + K F A M
Sbjct: 302 LNYSEDNLKQARSALERLYTAIKDVDLTVAA-----------APAEEFVAK----FKAAM 346
Query: 378 SDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGL 437
DD NT + F D ++ IN L + Q ++L K++ +LGL
Sbjct: 347 DDDFNTPEAYSVLF-DMVREIN-RLKLTDMAQASALAVTL-----------KQLADVLGL 393
Query: 438 L 438
L
Sbjct: 394 L 394
>sp|A3D302|SYC_SHEB5 Cysteine--tRNA ligase OS=Shewanella baltica (strain OS155 / ATCC
BAA-1091) GN=cysS PE=3 SV=1
Length = 459
Score = 385 bits (989), Expect = e-106, Method: Compositional matrix adjust.
Identities = 206/438 (47%), Positives = 266/438 (60%), Gaps = 38/438 (8%)
Query: 19 LKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
LKIYNS+T+QK+ F PI GK+GMYVCGVT YDL H+GH R VSFD++ RYL + EV
Sbjct: 2 LKIYNSITRQKQEFKPITPGKIGMYVCGVTIYDLCHIGHGRTFVSFDMIVRYLRYAGYEV 61
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
+ RN TDVDDKII+RAN+ E+ +L+ R E D L L P ++PR + H+ +I
Sbjct: 62 NFQRNITDVDDKIIKRANENNESCEALTERLIGEMHQDFDALNMLRPDFEPRATLHIAEI 121
Query: 139 KDMITQIINNDCAYVV-EGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADF 197
DM+ ++ AYV +GDV F+V P+YGRLSGQ L+ +AG RV VD K+NP DF
Sbjct: 122 IDMVELLLARGHAYVASDGDVLFSVASYPDYGRLSGQNLDQLQAGARVEVDETKQNPMDF 181
Query: 198 ALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257
LWK +K GEP+W+SPWGPGRPGWHIECSAM++ +L FDIHGGG DL FPHHENEIAQ
Sbjct: 182 VLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSKHLGLHFDIHGGGSDLQFPHHENEIAQ 241
Query: 258 SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSP 317
SC A V+YWMH G V + EKMSKSLGNFFTIR + Y +R+FL+S HYRS
Sbjct: 242 SCCAHDTPYVNYWMHTGMVMVDREKMSKSLGNFFTIRDVLGHYDAETVRYFLLSGHYRSQ 301
Query: 318 LNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARM 377
LNYS L A A+ +Y ++D ++ ++ AE+ + K F A M
Sbjct: 302 LNYSEDNLKQARSALERLYTAIKDVDLTVAA-----------APAEEFVAK----FKAAM 346
Query: 378 SDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGL 437
DD NT + F D ++ IN L + Q ++L K++ +LGL
Sbjct: 347 DDDFNTPEAYSVLF-DMVREIN-RLKLTDMAQASALAVTL-----------KQLADVLGL 393
Query: 438 LPP---------GAYSEV 446
L G+Y EV
Sbjct: 394 LSQEPEAFFQGGGSYDEV 411
>sp|A4Y5H9|SYC_SHEPC Cysteine--tRNA ligase OS=Shewanella putrefaciens (strain CN-32 /
ATCC BAA-453) GN=cysS PE=3 SV=1
Length = 461
Score = 385 bits (989), Expect = e-106, Method: Compositional matrix adjust.
Identities = 202/422 (47%), Positives = 262/422 (62%), Gaps = 26/422 (6%)
Query: 19 LKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
LKIYNS+T+QK+ F PI GK+GMYVCGVT YDL H+GH R VSFD++ RYL ++ EV
Sbjct: 4 LKIYNSITRQKQEFKPINPGKIGMYVCGVTIYDLCHIGHGRTFVSFDMIVRYLRYVGYEV 63
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
+ RN TDVDDKII+RAN+ E+ +L+ R E D L L P ++PR + H+ +I
Sbjct: 64 NFQRNITDVDDKIIKRANENNESCEALTERLIGEMHRDFDALNMLRPDFEPRATLHIAEI 123
Query: 139 KDMITQIINNDCAYVV-EGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADF 197
DM+ ++ AYV +GDV F+V P+YGRLSGQ L+ +AG RV VD K+NP DF
Sbjct: 124 IDMVELLLARGHAYVASDGDVLFSVASYPDYGRLSGQNLDQLQAGARVEVDENKQNPMDF 183
Query: 198 ALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257
LWK +K GEP+W+SPWGPGRPGWHIECSAM++ +L FDIHGGG DL FPHHENEIAQ
Sbjct: 184 VLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSKHLGLHFDIHGGGSDLQFPHHENEIAQ 243
Query: 258 SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSP 317
SC A V+YWMH G V + EKMSKSLGNFFTIR + Y +R+FL+S HYRS
Sbjct: 244 SCCAHDTPYVNYWMHTGMVMVDREKMSKSLGNFFTIRDVLGHYDAETVRYFLLSGHYRSQ 303
Query: 318 LNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARM 377
LNYS L A A+ +Y ++D ++ T PA E + +F A M
Sbjct: 304 LNYSEDNLKQARSALERLYTAIKDVDL----------TVAAAPAEEFIV-----KFKAAM 348
Query: 378 SDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGL 437
DD NT + F D ++ IN + K ++ +L ++ +VL +LG
Sbjct: 349 DDDFNTPEAYSVLF-DMVRDIN---------RLKATDIAKASALAVAMKQLADVLGLLGQ 398
Query: 438 LP 439
P
Sbjct: 399 DP 400
>sp|A1RL92|SYC_SHESW Cysteine--tRNA ligase OS=Shewanella sp. (strain W3-18-1) GN=cysS
PE=3 SV=1
Length = 461
Score = 385 bits (988), Expect = e-106, Method: Compositional matrix adjust.
Identities = 202/422 (47%), Positives = 262/422 (62%), Gaps = 26/422 (6%)
Query: 19 LKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
LKIYNS+T+QK+ F PI GK+GMYVCGVT YDL H+GH R VSFD++ RYL ++ EV
Sbjct: 4 LKIYNSITRQKQEFKPINPGKIGMYVCGVTIYDLCHIGHGRTFVSFDMIVRYLRYVGYEV 63
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
+ RN TDVDDKII+RAN+ E+ +L+ R E D L L P ++PR + H+ +I
Sbjct: 64 NFQRNITDVDDKIIKRANENNESCEALTERLIGEMHRDFDALNMLRPDFEPRATLHIAEI 123
Query: 139 KDMITQIINNDCAYVV-EGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADF 197
DM+ ++ AYV +GDV F+V P+YGRLSGQ L+ +AG RV VD K+NP DF
Sbjct: 124 IDMVELLLARGHAYVASDGDVLFSVASYPDYGRLSGQNLDQLQAGARVEVDENKQNPMDF 183
Query: 198 ALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257
LWK +K GEP+W+SPWGPGRPGWHIECSAM++ +L FDIHGGG DL FPHHENEIAQ
Sbjct: 184 VLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSKHLGLHFDIHGGGSDLQFPHHENEIAQ 243
Query: 258 SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSP 317
SC A V+YWMH G V + EKMSKSLGNFFTIR + Y +R+FL+S HYRS
Sbjct: 244 SCCAHDTPYVNYWMHTGMVMVDREKMSKSLGNFFTIRDVLGHYDAETVRYFLLSGHYRSQ 303
Query: 318 LNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARM 377
LNYS L A A+ +Y ++D ++ T PA E + +F A M
Sbjct: 304 LNYSEDNLKQARSALERLYTAIKDVDL----------TVAAAPAEEFIV-----KFKAAM 348
Query: 378 SDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGL 437
DD NT + F D ++ IN + K ++ +L ++ +VL +LG
Sbjct: 349 DDDFNTPEAYSVLF-DMVRDIN---------RLKATDIAKASALAVAMKQLADVLGLLGQ 398
Query: 438 LP 439
P
Sbjct: 399 DP 400
>sp|B9MMM6|SYC_CALBD Cysteine--tRNA ligase OS=Caldicellulosiruptor bescii (strain ATCC
BAA-1888 / DSM 6725 / Z-1320) GN=cysS PE=3 SV=1
Length = 465
Score = 385 bits (988), Expect = e-106, Method: Compositional matrix adjust.
Identities = 193/420 (45%), Positives = 260/420 (61%), Gaps = 15/420 (3%)
Query: 19 LKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
+K+YN++T KE F P+ GKV MYVCG T YD H+G+AR + FD L RY E+ EV
Sbjct: 1 MKLYNTLTMTKEEFEPLEEGKVKMYVCGPTVYDFIHIGNARPLIVFDTLRRYFEYKGYEV 60
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
Y++NFTDV+DK+I RAN G L+ R+ QEY D L T PR ++ +E +
Sbjct: 61 IYIQNFTDVEDKMINRANKEGITVFELAERFIQEYYKDADRLNVKRATKNPRATEEIEDM 120
Query: 139 KDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFA 198
+I ++I+ AYVV+GDV+F K YG+LS + +E AG RV + +K +P DFA
Sbjct: 121 IALIQRLIDKGYAYVVDGDVYFRTRKFAEYGKLSHKNIEELMAGARVDPNEKKEDPLDFA 180
Query: 199 LWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQS 258
LWKA K GEP+W SPWG GRPGWHIECS M+ YL DIH GG DLIFPHHENEIAQS
Sbjct: 181 LWKAKKEGEPAWSSPWGEGRPGWHIECSVMAMKYLGQTIDIHAGGQDLIFPHHENEIAQS 240
Query: 259 CAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPL 318
AA +W+HNG+V NNEKMSKSLGNFFT+R+I E+YHP ALR F++ AHYR PL
Sbjct: 241 EAATGKPFARFWLHNGYVNINNEKMSKSLGNFFTVREIIEKYHPEALRLFMLQAHYRKPL 300
Query: 319 NYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMS 378
N+S+ ++ A A+ IY ++ E + Q ++ + + I +L+ +F M
Sbjct: 301 NFSIDLIEQAEVALKRIYTCYENLEFLI---QNAASSSENDDKLKAAIEELKAKFIDAME 357
Query: 379 DDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLL 438
DDLNT+ TG + ++ IN+ N K E+L ++ +KE+ ILG+L
Sbjct: 358 DDLNTAEA-TGYLFEMVREINTYANSCSK-----------ETLTFAKDTLKELCSILGIL 405
>sp|A4XHE2|SYC_CALS8 Cysteine--tRNA ligase OS=Caldicellulosiruptor saccharolyticus
(strain ATCC 43494 / DSM 8903) GN=cysS PE=3 SV=1
Length = 465
Score = 385 bits (988), Expect = e-106, Method: Compositional matrix adjust.
Identities = 193/420 (45%), Positives = 261/420 (62%), Gaps = 15/420 (3%)
Query: 19 LKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
+K+YN++T KE F P+ GKV MYVCG T YD H+G+AR + FD L RY E+ EV
Sbjct: 1 MKLYNTLTMTKEEFEPLEEGKVKMYVCGPTVYDFIHIGNARPLIVFDTLRRYFEYKGYEV 60
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
Y++NFTDV+DK+I RAN G L+ R+ QEY D L T PR ++ +E +
Sbjct: 61 IYIQNFTDVEDKMINRANKEGITVFELAERFIQEYYKDADRLNVRRATKSPRATEEIEDM 120
Query: 139 KDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFA 198
+I ++I+ AYVV+GDV+F K YG+LS + +E+ AG RV +K +P DFA
Sbjct: 121 IALIQRLIDKGYAYVVDGDVYFRTRKFAEYGKLSHKNIEDLMAGARVDPSEKKEDPLDFA 180
Query: 199 LWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQS 258
LWKA K GEP+W+SPWG GRPGWHIECS M+ YL DIH GG DLIFPHHENEIAQS
Sbjct: 181 LWKAKKEGEPAWNSPWGEGRPGWHIECSVMAMKYLGQTIDIHAGGQDLIFPHHENEIAQS 240
Query: 259 CAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPL 318
AA +W+HNG+V NNEKMSKSLGNFFT+R+I E+YHP ALR F++ AHYR PL
Sbjct: 241 EAATGKPFARFWLHNGYVNINNEKMSKSLGNFFTVREIIEKYHPEALRLFMLQAHYRKPL 300
Query: 319 NYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMS 378
N+S+ ++ A A+ IY ++ E + Q ++ + + I +L+ +F M
Sbjct: 301 NFSIDLIEQAEVALKRIYTCYENLEFLI---QNAASSSENDDKLKAAIEELKAKFIDAME 357
Query: 379 DDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLL 438
DDLNT+ TG + ++ IN+ N K E+L ++ +KE+ ILG+L
Sbjct: 358 DDLNTAEA-TGYLFEMVREINTHANSCSK-----------ETLTFAKDILKELCSILGIL 405
>sp|B0TLV2|SYC_SHEHH Cysteine--tRNA ligase OS=Shewanella halifaxensis (strain HAW-EB4)
GN=cysS PE=3 SV=1
Length = 459
Score = 384 bits (987), Expect = e-106, Method: Compositional matrix adjust.
Identities = 203/421 (48%), Positives = 258/421 (61%), Gaps = 30/421 (7%)
Query: 19 LKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
LK+YNS+T+QKE F P+ GKVGMYVCGVT YDL H+GH R VSFD++ RYL + +V
Sbjct: 2 LKLYNSLTRQKEQFVPLQPGKVGMYVCGVTIYDLCHIGHGRTFVSFDMIVRYLRYSGYDV 61
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
+ RN TDVDDKII+RAN+ E+ SL+ R E D L P +PR + H+ +I
Sbjct: 62 NFQRNITDVDDKIIKRANENNESCDSLTERLIAEMHKDFDSLNMARPDNEPRATQHIPEI 121
Query: 139 KDMITQIINNDCAYVVE-GDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADF 197
DM+ ++I D AYV GDV F+V P YGRLSGQ LE +AG RV V+ KR+P DF
Sbjct: 122 IDMVERLIERDHAYVASSGDVLFSVSSFPEYGRLSGQNLEQLQAGARVEVEDTKRDPMDF 181
Query: 198 ALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257
LWK +K GEP+W+SPWGPGRPGWHIECSAM++ +L + FDIHGGG DL FPHHENEIAQ
Sbjct: 182 VLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSKHLGNHFDIHGGGSDLQFPHHENEIAQ 241
Query: 258 SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSP 317
SC A V+YWMH G V + EKMSKSL NFFTIR + Y +R+FL+S HYRS
Sbjct: 242 SCCAHDTPYVNYWMHTGMVMIDKEKMSKSLNNFFTIRDVLAHYDAATVRYFLLSGHYRSQ 301
Query: 318 LNYSVLQLDSASDAVFYIYQTLQDCEVAL--SPFQEHGKTARINPAAEDCINKLRDEFHA 375
LNYS L A A+ IY L+D ++++ +P QE +F
Sbjct: 302 LNYSEDNLKQAKAALERIYTALKDLDLSVEAAPAQE-----------------FVAKFKT 344
Query: 376 RMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRIL 435
M DD NT + F D ++ IN + K ++ +L E+ +VL IL
Sbjct: 345 AMDDDFNTPEAYSVLF-DMVREIN---------RLKATDMAKASALGVALKELADVLGIL 394
Query: 436 G 436
G
Sbjct: 395 G 395
>sp|B6YUQ3|SYC_THEON Cysteine--tRNA ligase OS=Thermococcus onnurineus (strain NA1)
GN=cysS PE=3 SV=1
Length = 476
Score = 384 bits (987), Expect = e-106, Method: Compositional matrix adjust.
Identities = 186/414 (44%), Positives = 258/414 (62%), Gaps = 7/414 (1%)
Query: 17 LTLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKC 76
+ +++YN++T+QKE F P+ G+V MYVCG T YD +HLGHAR ++FD++ RYLEH
Sbjct: 1 MAIRVYNTLTKQKEEFRPLREGEVRMYVCGPTVYDYTHLGHARTYIAFDVIRRYLEHRGY 60
Query: 77 EVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHME 136
V V NFTD+DDKIIRRAN+ GE+P L+ ++ + +L DM L+ P PRV++H++
Sbjct: 61 TVLMVMNFTDIDDKIIRRANETGEDPKELAEKFLRYFLEDMKALKVKPADIYPRVTEHIQ 120
Query: 137 QIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPAD 196
I D + ++ AY V+F V K +YG+LSG +LE G RV K+NP D
Sbjct: 121 DIIDFVRKLQEKGYAYEGNDGVYFEVRKFKDYGKLSGIKLEELVKGARVEPGEGKKNPED 180
Query: 197 FALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIA 256
FALWK AK GEP W+SPWG GRPGWHIECS MS YL FDIHGGG DLIFPHHENEIA
Sbjct: 181 FALWKKAKPGEPKWESPWGEGRPGWHIECSTMSTKYLGESFDIHGGGNDLIFPHHENEIA 240
Query: 257 QSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRS 316
QS A V YW+H G V + EKMSKSLGNF TIR++ ++Y P +R F++ HYRS
Sbjct: 241 QSEACTGHEWVRYWLHTGFVMVSGEKMSKSLGNFVTIRELLQKYSPEVIRFFVLQKHYRS 300
Query: 317 PLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHAR 376
PL+Y+ + A + + +Y TL++ VA+ + + + + R +F+
Sbjct: 301 PLDYTEEGIQHAKNNLERLYNTLENIRVAMEKADVAFRWDEEEFELYETVREARKKFYDA 360
Query: 377 MSDDLNTSHILTGAFQDALKFINSSLN--MLKKKQPKQQQLSLIESLRKIENEV 428
M DD NT+ L F+ +++++N + K ++PK+ L KI +EV
Sbjct: 361 MDDDFNTAEALKAVFE-----VSNAVNRYLTKVEKPKESVLRKALEFFKIVSEV 409
>sp|Q3A9P1|SYC_CARHZ Cysteine--tRNA ligase OS=Carboxydothermus hydrogenoformans (strain
Z-2901 / DSM 6008) GN=cysS PE=3 SV=1
Length = 465
Score = 384 bits (985), Expect = e-105, Method: Compositional matrix adjust.
Identities = 192/385 (49%), Positives = 251/385 (65%), Gaps = 9/385 (2%)
Query: 19 LKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
+KIYN++T+ KE F P GKV MYVCG T Y+ H+G+AR V FD + RY E+ EV
Sbjct: 1 MKIYNTLTKTKEEFIPREPGKVYMYVCGPTTYNYIHIGNARPIVFFDTVRRYFEYKGFEV 60
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
YV+NFTD+DDKII RA + G +P+ L +Y EY D L T P+V++H+ +I
Sbjct: 61 IYVQNFTDIDDKIINRALEEGISPIELGQKYIIEYFKDADRLGVKRATVHPKVTEHIPEI 120
Query: 139 KDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFA 198
+M+ +I AY VEG+V+FAV+ +YG+LSG+ LE +AG RV VD +K+NP DFA
Sbjct: 121 IEMVKGLIEKGYAYEVEGNVYFAVDSFSDYGKLSGRDLEELKAGARVEVDEKKKNPLDFA 180
Query: 199 LWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQS 258
LWK AK GEP W+SPWGPGRPGWHIECSAMS YL FDIHGGG DL+FPHHENE+AQS
Sbjct: 181 LWKKAKPGEPYWESPWGPGRPGWHIECSAMSLKYLGENFDIHGGGADLVFPHHENEVAQS 240
Query: 259 CAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPL 318
A YWMHNG +T N EKMSKSLGNFF +R+I E++ +R FL+S HYRSPL
Sbjct: 241 EAFTGKPFARYWMHNGFITVNQEKMSKSLGNFFLVREILEKFPGRVVRFFLLSTHYRSPL 300
Query: 319 NYSVLQLDSASDAVFYIYQTLQDC-EVALSPFQEHGKTARINPAAEDCINKLRDEFHARM 377
++ +L+ A A+ + +Q+ EV P + ARI E N LRD F+ M
Sbjct: 301 DFDDKKLNEAKAALERVDNFVQNLKEVNPLPGE-----ARIE-IQEKITNFLRD-FNEAM 353
Query: 378 SDDLNTSHILTGAFQDALKFINSSL 402
DD NT+ + F+ ++F N+ +
Sbjct: 354 EDDFNTAQAMASLFE-LVRFGNTQI 377
>sp|A1VDQ5|SYC_DESVV Cysteine--tRNA ligase OS=Desulfovibrio vulgaris subsp. vulgaris
(strain DP4) GN=cysS PE=3 SV=1
Length = 485
Score = 384 bits (985), Expect = e-105, Method: Compositional matrix adjust.
Identities = 199/434 (45%), Positives = 267/434 (61%), Gaps = 13/434 (2%)
Query: 19 LKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
++IYNS++++KELFTP V GKV MYVCG+TAYDL H+GHAR+AV FD+L RYL H +V
Sbjct: 1 MQIYNSLSRRKELFTPAVPGKVNMYVCGITAYDLCHIGHARSAVVFDVLVRYLRHTGLDV 60
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
T+ RNFTDVDDKII+RAN+ G ++ +Y + DM L L +P+ + H+ ++
Sbjct: 61 TFARNFTDVDDKIIKRANEEGLTSQQVAEKYIDTFYEDMDRLNVLRADIEPKATGHILEM 120
Query: 139 KDMITQIINNDCAYVV-EGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADF 197
+ ++I AY GDV+F V P YG+LSG+ +++ R+G RVA K +P DF
Sbjct: 121 IALCEKLIAKGKAYATPSGDVYFRVRSFPEYGKLSGRDIDDMRSGARVAPGEEKEDPLDF 180
Query: 198 ALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257
ALWK+AK GEPSW SPWG GRPGWHIECSAMS ++ DIHGGG DLIFPHHENEIAQ
Sbjct: 181 ALWKSAKPGEPSWTSPWGEGRPGWHIECSAMSEKHMPLPLDIHGGGQDLIFPHHENEIAQ 240
Query: 258 SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSP 317
+ AA V YWMHNG V + EKMSKSLGNF TIR I E Y P LR FL++ HYRSP
Sbjct: 241 TEAALDKPFVRYWMHNGFVQVDAEKMSKSLGNFKTIRDILEGYLPEVLRFFLLTKHYRSP 300
Query: 318 LNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTA-RINPAAEDC---INKLRDEF 373
++++ +D A ++ IY+ L E G++ P D + L F
Sbjct: 301 IDFTFDSMDEAEKSLKRIYEALSLART------ERGRSKWSATPLPADVTAEFDTLDRAF 354
Query: 374 HARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLR 433
+ DDLNT+ L F ++ +N L K + + L+L+E L + + +VL
Sbjct: 355 DEALEDDLNTAAALGHVFG-TIRLVNRLLED-KNLRKSAETLALLERLDGLVAKWMKVLG 412
Query: 434 ILGLLPPGAYSEVK 447
+ G P S++K
Sbjct: 413 VFGREPEAFLSDLK 426
>sp|Q5QYP3|SYC_IDILO Cysteine--tRNA ligase OS=Idiomarina loihiensis (strain ATCC BAA-735
/ DSM 15497 / L2-TR) GN=cysS PE=3 SV=1
Length = 459
Score = 383 bits (984), Expect = e-105, Method: Compositional matrix adjust.
Identities = 197/423 (46%), Positives = 266/423 (62%), Gaps = 28/423 (6%)
Query: 17 LTLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKC 76
+ L ++N++T++K+LF PI G VG+YVCGVT YD H+GHAR V+FD++ RYL L
Sbjct: 1 MALTVFNTLTRKKQLFEPIQPGHVGIYVCGVTTYDYCHIGHARTYVAFDIVVRYLRKLGY 60
Query: 77 EVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHME 136
V YVRN TD+DDKII+RA + GE+ ++ R+ +E D L + P +PRV+ HM+
Sbjct: 61 SVKYVRNITDLDDKIIKRAAENGEDFHQVTERFIREMHKDFDALNLVRPDIEPRVTSHMD 120
Query: 137 QIKDMITQIINNDCAYVV-EGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPA 195
+I MI ++I N AY GDV F V +YG+LS Q LE +AG RV VD+ K++P
Sbjct: 121 EIILMIERLIENGNAYEAGNGDVLFDVSTFNDYGKLSRQDLEQLQAGSRVDVDAAKQDPL 180
Query: 196 DFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEI 255
DF LWK+AK GEPSW SPWG GRPGWHIECSAM+ +L S FDIHGGG DL FPHHENEI
Sbjct: 181 DFVLWKSAKPGEPSWSSPWGEGRPGWHIECSAMNKKHLGSTFDIHGGGSDLSFPHHENEI 240
Query: 256 AQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYR 315
AQSC A Q V YWMH+G V +NEKMSKSLGNFFTIR + E+Y +R+FL+S+HYR
Sbjct: 241 AQSCCANQSEYVKYWMHSGMVQVDNEKMSKSLGNFFTIRSVLEQYDAETVRYFLLSSHYR 300
Query: 316 SPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHA 375
S LNY+ LD A A+ +Y L+D ++P A+E+ +K F
Sbjct: 301 SQLNYTQENLDQAHSALERLYTALRD----ITP----------QTASEELRSKYWQSFQQ 346
Query: 376 RMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRIL 435
M DDLN ++ F+ I +N ++ P ++ ++ + + E+ ++
Sbjct: 347 AMDDDLNAPEAMSVLFE-----IAREINRNRESAP--------DTAAQLAHVLLELAEVM 393
Query: 436 GLL 438
GLL
Sbjct: 394 GLL 396
>sp|B1KLU0|SYC_SHEWM Cysteine--tRNA ligase OS=Shewanella woodyi (strain ATCC 51908 /
MS32) GN=cysS PE=3 SV=1
Length = 459
Score = 383 bits (984), Expect = e-105, Method: Compositional matrix adjust.
Identities = 191/382 (50%), Positives = 246/382 (64%), Gaps = 17/382 (4%)
Query: 19 LKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
LK+YNS+T+QKE F P+ GKVGMYVCG+T YDL H+GH R V+FD++ RYL + +V
Sbjct: 2 LKLYNSLTRQKEEFKPLQPGKVGMYVCGITIYDLCHIGHGRTFVAFDMIVRYLRYSGYDV 61
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
++RN TDVDDKII+RA + E+ SL+ R E D L P ++PR + HM +I
Sbjct: 62 NFLRNITDVDDKIIKRAAENKESCDSLTERLIGEMHKDFDSLNMKRPDFEPRATLHMAEI 121
Query: 139 KDMITQIINNDCAYVVE-GDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADF 197
+M+ ++I + AYV GDV F+V P YGRLSGQ LE +AG RV V+ KR+P DF
Sbjct: 122 IEMVEKLIEKEHAYVSSNGDVLFSVSSFPEYGRLSGQNLEQLQAGARVEVEDSKRDPMDF 181
Query: 198 ALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257
LWK +K GEP+W+SPWGPGRPGWHIECSAM++ +L FDIHGGG DL FPHHENEIAQ
Sbjct: 182 VLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSKHLGQHFDIHGGGSDLQFPHHENEIAQ 241
Query: 258 SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSP 317
SC A V+YWMH G V + EKMSKSL NFFTIR + Y +R+FL+S HYRS
Sbjct: 242 SCCAHNTPYVNYWMHTGMVMVDKEKMSKSLNNFFTIRDVLAHYDAATIRYFLLSGHYRSQ 301
Query: 318 LNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARM 377
LNYS L A A+ +Y L+D ++ + P AAE+ ++K F M
Sbjct: 302 LNYSEDNLKQAKSALARLYTALKDLDLTVEP-----------AAAENFVSK----FKQAM 346
Query: 378 SDDLNTSHILTGAFQDALKFIN 399
DD NT + F D ++ +N
Sbjct: 347 DDDFNTPEAYSVLF-DMVREVN 367
>sp|Q8EG22|SYC_SHEON Cysteine--tRNA ligase OS=Shewanella oneidensis (strain MR-1)
GN=cysS PE=3 SV=1
Length = 459
Score = 383 bits (983), Expect = e-105, Method: Compositional matrix adjust.
Identities = 202/423 (47%), Positives = 263/423 (62%), Gaps = 33/423 (7%)
Query: 19 LKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
LKIYNS+T+QK+ F PI GKVGMYVCGVT YDL H+GH R VSFD++ RYL + EV
Sbjct: 2 LKIYNSITRQKQEFKPINPGKVGMYVCGVTVYDLCHIGHGRTFVSFDMIVRYLRYAGYEV 61
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
+ RN TD+DDKII+RAN+ E+ +L++R E D L P ++PR + H+ +I
Sbjct: 62 NFQRNITDIDDKIIKRANENQEDCNTLTDRLIGEMHKDFDALNMKRPDFEPRATLHIAEI 121
Query: 139 KDMITQIINNDCAYVV-EGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADF 197
DM+ +++ AYV +GDV F+V P YGRLSGQ LE +AG RV VD K+NP DF
Sbjct: 122 IDMVERLLARGHAYVAADGDVLFSVASFPEYGRLSGQNLEQLQAGARVEVDDNKQNPMDF 181
Query: 198 ALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257
LWK +K GEP+W+SPWGPGRPGWHIECSAM++ +L FDIHGGG DL FPHHENEIAQ
Sbjct: 182 VLWKMSKPGEPTWESPWGPGRPGWHIECSAMNSKHLGLHFDIHGGGSDLQFPHHENEIAQ 241
Query: 258 SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSP 317
SC A V+YWMH G V + EKMSKSLGNFFTIR + Y +R+FL+S HYRS
Sbjct: 242 SCCAHDTPYVNYWMHTGMVMIDREKMSKSLGNFFTIRDVLSHYDAETVRYFLLSGHYRSQ 301
Query: 318 LNYSVLQLDSASDAVFYIYQTLQDCE--VALSPFQEHGKTARINPAAEDCINKLRDEFHA 375
+NYS L A A+ +Y ++D + VA +P AE+ + K F A
Sbjct: 302 INYSEENLKQARAALERLYTAIKDVDLTVAAAP-------------AEEFVAK----FKA 344
Query: 376 RMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRIL 435
M DD NT + F D ++ IN + +L+ + + +K++ +L
Sbjct: 345 AMDDDFNTPEAYSVLF-DMVREIN------------RLKLTDMAEASALAVSMKQLADVL 391
Query: 436 GLL 438
GLL
Sbjct: 392 GLL 394
>sp|Q0AJJ4|SYC_NITEC Cysteine--tRNA ligase OS=Nitrosomonas eutropha (strain C91) GN=cysS
PE=3 SV=1
Length = 467
Score = 383 bits (983), Expect = e-105, Method: Compositional matrix adjust.
Identities = 181/324 (55%), Positives = 231/324 (71%), Gaps = 1/324 (0%)
Query: 19 LKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
LKIY+++T+ + F P+ GKV MYVCG+T YD HLGHAR V FD + R+L+ L EV
Sbjct: 2 LKIYDTLTRSRREFIPLTPGKVKMYVCGMTVYDHCHLGHARVLVVFDSVVRWLQTLDYEV 61
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
TYVRN TD+DDKIIRRA + E +L+ RY Q D A L + P+++PR ++ +E +
Sbjct: 62 TYVRNITDIDDKIIRRALENHEPFGALTARYIQAMEEDAAALGIISPSFEPRATECIESM 121
Query: 139 KDMITQIINNDCAYVVE-GDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADF 197
MI +++ AYV GDVF+ V + P YG+LSG+ L++ RAGERV +D+ KR+P DF
Sbjct: 122 VTMIESLLSKGLAYVANNGDVFYDVRRFPGYGKLSGKSLDDLRAGERVEIDTNKRDPLDF 181
Query: 198 ALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257
LWKAAK EPSWDSPWG GRPGWHIECSAMS HYL +FDIHGGG DL FPHHENEIAQ
Sbjct: 182 VLWKAAKPDEPSWDSPWGKGRPGWHIECSAMSGHYLGERFDIHGGGQDLQFPHHENEIAQ 241
Query: 258 SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSP 317
S +V+YWMHNG V +NEKMSKSLGNFFT+R++ RY P +R F++ AHYRSP
Sbjct: 242 SEGVHGHPHVNYWMHNGFVRVDNEKMSKSLGNFFTVREVLARYQPEVVRFFIVRAHYRSP 301
Query: 318 LNYSVLQLDSASDAVFYIYQTLQD 341
LNYS L+ A +A+ +Y L++
Sbjct: 302 LNYSDAHLNDARNALERLYTALKN 325
>sp|B8CRG0|SYC_SHEPW Cysteine--tRNA ligase OS=Shewanella piezotolerans (strain WP3 / JCM
13877) GN=cysS PE=3 SV=1
Length = 459
Score = 383 bits (983), Expect = e-105, Method: Compositional matrix adjust.
Identities = 195/416 (46%), Positives = 255/416 (61%), Gaps = 13/416 (3%)
Query: 19 LKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
LK+YN++T+QKE F PI GK+GMYVCGVT YDL H+GH R VSFD++ RYL + EV
Sbjct: 2 LKLYNTLTRQKEQFVPIQPGKIGMYVCGVTIYDLCHIGHGRTFVSFDMIVRYLRYSGYEV 61
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
+ RN TDVDDKII+RAN+ E+ SL+ R E D L P ++PR + HM +I
Sbjct: 62 NFQRNITDVDDKIIKRANENNESCDSLTERLIGEMHRDFDSLNMARPDFEPRATLHMPEI 121
Query: 139 KDMITQIINNDCAYVV-EGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADF 197
+M+ ++I + AYV GDV F+V P YGRLSGQ LE +AG RV V+ KR+P DF
Sbjct: 122 IEMVEKLIAREHAYVAANGDVLFSVSSFPEYGRLSGQNLEQLQAGARVEVEDAKRDPMDF 181
Query: 198 ALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257
LWK +K GEP+WDSPWGPGRPGWHIECSAM++ +L + FDIHGGG DL FPHHENEIAQ
Sbjct: 182 VLWKMSKPGEPTWDSPWGPGRPGWHIECSAMNSKHLGNHFDIHGGGSDLQFPHHENEIAQ 241
Query: 258 SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSP 317
SC A V+YWMH G V + EKMSKSL NFFTIR + Y +R+FL+S HYRS
Sbjct: 242 SCCAHDTKYVNYWMHTGMVMVDKEKMSKSLNNFFTIRDVLNHYDAATVRYFLLSGHYRSQ 301
Query: 318 LNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCIN---------K 368
LNYS L A + IY L+D ++ + A+ A +D N +
Sbjct: 302 LNYSEENLKQAKSGLERIYTALKDLDLTVDAAPAEAFIAQFKRAMDDDFNTPEAYSVLFE 361
Query: 369 LRDEFHARMSDDLNTSHILTGAFQ---DALKFINSSLNMLKKKQPKQQQLSLIESL 421
+ E + D+ + L A + D L + ++ K + +++ IE+L
Sbjct: 362 MVREINRLKLTDMQQASALGVALKQLADVLGILGQDVDTFFKGEGSDDEVAEIEAL 417
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 174,319,564
Number of Sequences: 539616
Number of extensions: 7351404
Number of successful extensions: 23454
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 217
Number of HSP's that attempted gapping in prelim test: 20532
Number of HSP's gapped (non-prelim): 1263
length of query: 464
length of database: 191,569,459
effective HSP length: 121
effective length of query: 343
effective length of database: 126,275,923
effective search space: 43312641589
effective search space used: 43312641589
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)