Query 012397
Match_columns 464
No_of_seqs 189 out of 1800
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 02:13:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012397.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012397hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02946 cysteine-tRNA ligase 100.0 9.5E-87 2.1E-91 685.4 42.1 429 4-439 47-475 (557)
2 COG0215 CysS Cysteinyl-tRNA sy 100.0 1.5E-84 3.2E-89 645.0 38.8 376 18-406 1-379 (464)
3 PRK14535 cysS cysteinyl-tRNA s 100.0 3.1E-82 6.7E-87 653.8 42.6 379 9-401 218-613 (699)
4 PRK00260 cysS cysteinyl-tRNA s 100.0 4.9E-81 1.1E-85 644.7 43.6 398 18-438 2-399 (463)
5 PTZ00399 cysteinyl-tRNA-synthe 100.0 1.1E-80 2.4E-85 659.1 45.8 416 16-440 37-466 (651)
6 TIGR03447 mycothiol_MshC cyste 100.0 4.9E-81 1.1E-85 622.5 36.7 368 11-400 10-387 (411)
7 PRK14536 cysS cysteinyl-tRNA s 100.0 2.5E-80 5.4E-85 632.1 42.3 382 18-400 2-404 (490)
8 TIGR00435 cysS cysteinyl-tRNA 100.0 8.4E-80 1.8E-84 633.9 41.9 399 19-438 1-401 (465)
9 PRK14534 cysS cysteinyl-tRNA s 100.0 1.2E-77 2.5E-82 609.3 39.5 381 18-401 2-398 (481)
10 PRK12418 cysteinyl-tRNA synthe 100.0 2.3E-76 4.9E-81 587.0 34.0 354 33-406 2-366 (384)
11 KOG2007 Cysteinyl-tRNA synthet 100.0 6.3E-76 1.4E-80 574.0 35.2 416 12-439 28-454 (586)
12 PF01406 tRNA-synt_1e: tRNA sy 100.0 9.8E-74 2.1E-78 542.5 22.0 299 32-330 1-300 (300)
13 COG0143 MetG Methionyl-tRNA sy 100.0 6E-69 1.3E-73 553.6 39.2 410 41-456 6-516 (558)
14 PLN02610 probable methionyl-tR 100.0 1.5E-63 3.3E-68 539.1 38.8 411 38-453 15-533 (801)
15 PLN02224 methionine-tRNA ligas 100.0 1.8E-63 3.9E-68 524.1 36.2 403 42-453 71-547 (616)
16 PRK11893 methionyl-tRNA synthe 100.0 1.2E-62 2.5E-67 519.1 36.2 401 38-453 1-477 (511)
17 PRK12267 methionyl-tRNA synthe 100.0 3.3E-62 7.1E-67 526.4 36.2 402 41-453 5-479 (648)
18 PRK00133 metG methionyl-tRNA s 100.0 7.8E-62 1.7E-66 524.0 39.0 409 39-453 3-504 (673)
19 TIGR00398 metG methionyl-tRNA 100.0 5.2E-61 1.1E-65 507.5 38.0 405 41-453 2-504 (530)
20 PRK12268 methionyl-tRNA synthe 100.0 3.1E-59 6.6E-64 496.7 37.9 409 39-452 4-510 (556)
21 KOG0436 Methionyl-tRNA synthet 100.0 2.1E-59 4.7E-64 448.3 32.4 411 41-457 40-532 (578)
22 COG0525 ValS Valyl-tRNA synthe 100.0 3.5E-54 7.5E-59 455.7 32.6 428 30-462 22-709 (877)
23 cd00672 CysRS_core catalytic c 100.0 1.8E-53 4E-58 394.4 22.4 213 20-321 1-213 (213)
24 TIGR00422 valS valyl-tRNA synt 100.0 3.8E-52 8.2E-57 460.8 32.5 421 38-462 33-711 (861)
25 PF09334 tRNA-synt_1g: tRNA sy 100.0 2.2E-53 4.7E-58 429.3 17.6 293 42-339 3-390 (391)
26 PRK13208 valS valyl-tRNA synth 100.0 1.1E-51 2.3E-56 454.0 32.0 417 38-462 38-715 (800)
27 PRK05729 valS valyl-tRNA synth 100.0 2.8E-50 6.1E-55 445.6 32.7 417 38-462 36-706 (874)
28 PRK14900 valS valyl-tRNA synth 100.0 1.8E-49 3.9E-54 442.7 33.1 417 38-462 48-732 (1052)
29 PLN02943 aminoacyl-tRNA ligase 100.0 2.5E-48 5.4E-53 430.6 33.8 417 38-462 88-782 (958)
30 PRK05743 ileS isoleucyl-tRNA s 100.0 2.9E-48 6.3E-53 429.3 29.4 417 40-462 51-782 (912)
31 PRK01611 argS arginyl-tRNA syn 100.0 2.6E-48 5.6E-53 406.7 26.5 362 36-440 109-504 (507)
32 PRK06039 ileS isoleucyl-tRNA s 100.0 3E-47 6.6E-52 424.2 33.5 419 38-462 41-785 (975)
33 PLN02882 aminoacyl-tRNA ligase 100.0 3.5E-47 7.5E-52 425.8 33.5 224 235-462 566-816 (1159)
34 TIGR00395 leuS_arch leucyl-tRN 100.0 3.1E-47 6.6E-52 422.2 31.4 213 235-462 572-788 (938)
35 PLN02381 valyl-tRNA synthetase 100.0 1.3E-46 2.9E-51 418.9 32.7 421 38-462 128-888 (1066)
36 cd00668 Ile_Leu_Val_MetRS_core 100.0 2.4E-48 5.2E-53 384.4 16.3 270 40-320 2-312 (312)
37 PTZ00419 valyl-tRNA synthetase 100.0 1.7E-46 3.6E-51 420.0 31.6 417 38-462 60-819 (995)
38 cd00814 MetRS_core catalytic c 100.0 2.6E-47 5.6E-52 377.7 21.1 276 41-320 3-319 (319)
39 PRK00390 leuS leucyl-tRNA synt 100.0 1.3E-45 2.7E-50 403.6 33.3 399 39-462 33-733 (805)
40 TIGR00396 leuS_bact leucyl-tRN 100.0 6.8E-46 1.5E-50 406.4 30.6 401 41-462 32-770 (842)
41 TIGR00392 ileS isoleucyl-tRNA 100.0 1.8E-45 3.9E-50 407.9 33.1 222 235-462 563-804 (861)
42 PRK13804 ileS isoleucyl-tRNA s 100.0 1.1E-45 2.5E-50 409.6 31.1 222 235-462 582-820 (961)
43 PLN02843 isoleucyl-tRNA synthe 100.0 1.6E-45 3.5E-50 408.3 32.3 224 235-462 563-813 (974)
44 PTZ00427 isoleucine-tRNA ligas 100.0 1.6E-44 3.5E-49 402.9 33.3 213 235-452 672-906 (1205)
45 KOG1247 Methionyl-tRNA synthet 100.0 1.7E-45 3.7E-50 352.2 19.8 420 36-460 10-528 (567)
46 PLN02563 aminoacyl-tRNA ligase 100.0 2.1E-44 4.5E-49 395.5 28.5 399 41-462 113-885 (963)
47 COG0060 IleS Isoleucyl-tRNA sy 100.0 4.3E-44 9.2E-49 383.5 28.2 422 37-462 47-793 (933)
48 cd00817 ValRS_core catalytic c 100.0 1.9E-44 4.1E-49 364.8 16.9 279 40-320 3-382 (382)
49 COG0018 ArgS Arginyl-tRNA synt 100.0 7.1E-42 1.5E-46 355.9 33.3 361 37-440 116-574 (577)
50 PRK12451 arginyl-tRNA syntheta 100.0 8.2E-42 1.8E-46 360.1 32.7 360 37-440 112-559 (562)
51 PRK12300 leuS leucyl-tRNA synt 100.0 4.3E-42 9.3E-47 379.7 31.6 210 235-462 529-742 (897)
52 cd00812 LeuRS_core catalytic c 100.0 9.9E-44 2.1E-48 350.9 16.1 271 40-322 2-314 (314)
53 COG0495 LeuS Leucyl-tRNA synth 100.0 5.4E-42 1.2E-46 364.5 28.0 415 26-462 18-743 (814)
54 TIGR00456 argS arginyl-tRNA sy 100.0 2.2E-41 4.8E-46 358.2 30.4 367 28-440 100-563 (566)
55 PLN02286 arginine-tRNA ligase 100.0 1.7E-40 3.8E-45 350.2 31.6 357 37-440 116-573 (576)
56 cd00818 IleRS_core catalytic c 100.0 8E-42 1.7E-46 340.2 15.5 277 39-320 2-338 (338)
57 KOG0432 Valyl-tRNA synthetase 100.0 4.3E-39 9.4E-44 333.0 25.8 407 37-451 74-807 (995)
58 PLN02959 aminoacyl-tRNA ligase 100.0 7E-38 1.5E-42 350.2 31.3 214 235-462 670-890 (1084)
59 KOG0435 Leucyl-tRNA synthetase 100.0 2.5E-34 5.5E-39 289.8 25.7 402 38-455 57-784 (876)
60 cd00674 LysRS_core_class_I cat 100.0 1E-34 2.2E-39 286.4 21.8 273 39-335 19-328 (353)
61 KOG0433 Isoleucyl-tRNA synthet 100.0 5.1E-33 1.1E-37 282.8 30.3 212 236-451 566-796 (937)
62 PRK00750 lysK lysyl-tRNA synth 100.0 9.5E-33 2.1E-37 287.2 19.4 279 39-339 23-336 (510)
63 KOG0434 Isoleucyl-tRNA synthet 100.0 1.2E-31 2.5E-36 270.5 22.4 224 235-462 553-805 (1070)
64 PF00133 tRNA-synt_1: tRNA syn 100.0 1.5E-32 3.3E-37 293.1 16.7 127 38-164 23-169 (601)
65 TIGR00467 lysS_arch lysyl-tRNA 100.0 6.1E-30 1.3E-34 264.2 30.4 275 39-341 18-332 (515)
66 cd00671 ArgRS_core catalytic c 100.0 1.6E-29 3.4E-34 236.0 20.7 207 39-288 1-212 (212)
67 KOG4426 Arginyl-tRNA synthetas 100.0 1.5E-28 3.3E-33 237.0 25.3 358 37-440 187-653 (656)
68 COG1384 LysS Lysyl-tRNA synthe 100.0 6.1E-27 1.3E-31 233.8 26.4 274 39-339 19-335 (521)
69 PF01921 tRNA-synt_1f: tRNA sy 99.9 2.2E-27 4.8E-32 231.4 11.1 276 38-337 22-338 (360)
70 PF00750 tRNA-synt_1d: tRNA sy 99.9 3.1E-25 6.7E-30 222.2 14.8 248 34-322 16-354 (354)
71 cd00802 class_I_aaRS_core cata 99.9 1.5E-23 3.3E-28 183.7 13.5 142 42-287 1-143 (143)
72 KOG1195 Arginyl-tRNA synthetas 99.9 6.3E-22 1.4E-26 195.6 24.5 358 37-440 109-564 (567)
73 PRK04156 gltX glutamyl-tRNA sy 99.9 5E-22 1.1E-26 205.9 14.8 259 37-331 99-404 (567)
74 KOG0437 Leucyl-tRNA synthetase 99.8 7.2E-19 1.6E-23 179.9 23.1 216 235-463 662-881 (1080)
75 TIGR00464 gltX_bact glutamyl-t 99.8 4E-17 8.7E-22 168.6 27.0 251 46-328 7-311 (470)
76 cd09287 GluRS_non_core catalyt 99.8 7.4E-18 1.6E-22 157.3 14.0 210 44-330 5-231 (240)
77 PRK01406 gltX glutamyl-tRNA sy 99.8 1.7E-16 3.7E-21 164.1 24.9 234 46-311 10-280 (476)
78 PRK12410 glutamylglutaminyl-tR 99.7 4.9E-17 1.1E-21 164.3 16.0 244 46-326 5-280 (433)
79 PRK12558 glutamyl-tRNA synthet 99.7 8E-17 1.7E-21 163.5 15.1 246 46-327 8-287 (445)
80 PRK14895 gltX glutamyl-tRNA sy 99.7 1.5E-15 3.2E-20 156.0 19.3 245 46-327 10-287 (513)
81 cd00418 GlxRS_core catalytic c 99.7 7.6E-16 1.6E-20 143.3 15.3 176 46-313 7-184 (230)
82 PLN02627 glutamyl-tRNA synthet 99.7 8.6E-16 1.9E-20 157.9 16.1 254 38-327 44-341 (535)
83 PLN03233 putative glutamate-tR 99.6 5.4E-15 1.2E-19 152.0 17.4 253 46-331 17-312 (523)
84 PRK05710 glutamyl-Q tRNA(Asp) 99.6 2.6E-15 5.7E-20 145.1 14.0 219 46-312 11-262 (299)
85 TIGR03838 queuosine_YadB gluta 99.6 4.8E-15 1E-19 141.7 14.6 240 46-325 6-271 (272)
86 COG0008 GlnS Glutamyl- and glu 99.6 7.8E-15 1.7E-19 149.9 15.6 253 45-327 14-299 (472)
87 cd00807 GlnRS_core catalytic c 99.6 2.3E-14 5E-19 133.4 15.7 206 46-330 7-229 (238)
88 PRK05347 glutaminyl-tRNA synth 99.6 4.1E-14 9E-19 145.9 18.5 257 45-331 34-336 (554)
89 PF00749 tRNA-synt_1c: tRNA sy 99.6 3.3E-14 7.1E-19 140.0 15.4 225 46-312 7-275 (314)
90 PTZ00402 glutamyl-tRNA synthet 99.6 6.6E-14 1.4E-18 145.4 18.1 256 46-331 58-354 (601)
91 TIGR00463 gltX_arch glutamyl-t 99.6 3.3E-14 7.2E-19 147.8 15.5 254 46-331 99-395 (560)
92 PRK14703 glutaminyl-tRNA synth 99.6 5.8E-14 1.2E-18 150.9 17.6 254 46-331 37-339 (771)
93 cd00808 GluRS_core catalytic c 99.6 8.9E-14 1.9E-18 130.6 15.8 189 46-325 7-208 (239)
94 PLN02907 glutamate-tRNA ligase 99.6 1.2E-13 2.5E-18 148.9 17.9 253 46-331 219-514 (722)
95 TIGR00440 glnS glutaminyl-tRNA 99.5 9.4E-14 2E-18 143.1 16.1 255 46-330 6-306 (522)
96 PTZ00437 glutaminyl-tRNA synth 99.5 2.1E-13 4.5E-18 140.6 16.4 254 38-331 50-352 (574)
97 PLN02859 glutamine-tRNA ligase 99.5 6.8E-13 1.5E-17 141.3 17.0 258 38-329 263-564 (788)
98 cd07956 Anticodon_Ia_Arg Antic 99.5 5.5E-13 1.2E-17 118.5 11.9 140 299-440 2-153 (156)
99 KOG1149 Glutamyl-tRNA syntheta 99.4 2.2E-12 4.8E-17 126.1 14.8 255 40-327 34-329 (524)
100 cd07960 Anticodon_Ia_Ile_BEm A 99.3 1.9E-11 4.1E-16 111.3 13.3 140 320-462 1-154 (180)
101 cd07961 Anticodon_Ia_Ile_ABEc 99.3 8.3E-11 1.8E-15 107.4 13.2 139 320-462 1-157 (183)
102 cd07962 Anticodon_Ia_Val Antic 99.2 1.2E-10 2.5E-15 100.9 13.2 128 320-450 1-135 (135)
103 cd07957 Anticodon_Ia_Met Antic 99.2 2.7E-10 5.8E-15 97.5 13.3 92 356-450 35-129 (129)
104 cd07959 Anticodon_Ia_Leu_AEc A 99.2 5.8E-10 1.2E-14 93.8 12.9 115 320-450 1-117 (117)
105 cd07958 Anticodon_Ia_Leu_BEm A 99.2 4.9E-10 1.1E-14 94.1 12.4 115 320-450 1-117 (117)
106 PF05746 DALR_1: DALR anticodo 99.0 1.3E-09 2.9E-14 92.1 8.5 104 335-440 1-116 (119)
107 PF08264 Anticodon_1: Anticodo 99.0 1.5E-09 3.2E-14 95.9 7.6 100 359-462 1-109 (153)
108 smart00836 DALR_1 DALR anticod 98.6 2E-07 4.4E-12 79.0 9.0 104 335-440 1-119 (122)
109 cd07375 Anticodon_Ia_like Anti 98.6 8E-07 1.7E-11 74.1 11.7 110 323-436 2-114 (117)
110 KOG1147 Glutamyl-tRNA syntheta 98.1 1.2E-05 2.5E-10 81.5 9.8 98 38-155 199-296 (712)
111 TIGR00233 trpS tryptophanyl-tR 97.8 0.00016 3.5E-09 71.9 11.2 83 41-134 3-86 (328)
112 PRK12285 tryptophanyl-tRNA syn 97.8 0.00021 4.4E-09 72.0 11.3 87 37-135 63-150 (368)
113 PRK13354 tyrosyl-tRNA syntheta 97.8 6.9E-05 1.5E-09 76.6 7.7 72 236-312 186-258 (410)
114 COG0180 TrpS Tryptophanyl-tRNA 97.6 0.00068 1.5E-08 66.1 11.9 74 40-124 5-79 (314)
115 PRK08560 tyrosyl-tRNA syntheta 97.6 0.00024 5.3E-09 70.7 8.4 75 38-124 28-102 (329)
116 PRK05912 tyrosyl-tRNA syntheta 97.6 0.00018 3.9E-09 73.6 7.6 72 236-312 188-260 (408)
117 cd00395 Tyr_Trp_RS_core cataly 97.5 0.0006 1.3E-08 66.1 9.5 72 43-123 2-80 (273)
118 PF00579 tRNA-synt_1b: tRNA sy 97.4 6.4E-05 1.4E-09 73.8 2.5 42 38-83 3-44 (292)
119 PF09190 DALR_2: DALR domain; 97.4 0.00065 1.4E-08 50.3 7.0 60 372-444 1-60 (63)
120 cd00805 TyrRS_core catalytic c 97.4 0.00038 8.2E-09 67.4 6.5 75 43-123 3-81 (269)
121 cd00806 TrpRS_core catalytic c 97.3 0.00083 1.8E-08 65.4 8.4 71 43-124 2-72 (280)
122 PTZ00126 tyrosyl-tRNA syntheta 97.3 0.0013 2.8E-08 66.6 9.6 87 38-133 64-151 (383)
123 COG0162 TyrS Tyrosyl-tRNA synt 97.2 0.00048 1E-08 69.7 5.4 54 236-292 180-234 (401)
124 KOG1148 Glutaminyl-tRNA synthe 97.0 0.0018 3.8E-08 66.9 7.6 97 37-153 246-342 (764)
125 PTZ00348 tyrosyl-tRNA syntheta 96.6 0.011 2.5E-07 63.8 9.8 86 39-133 31-117 (682)
126 TIGR00234 tyrS tyrosyl-tRNA sy 96.5 0.0077 1.7E-07 61.1 7.8 39 40-82 30-69 (377)
127 smart00840 DALR_2 This DALR do 96.5 0.0095 2.1E-07 42.7 5.9 54 373-437 2-55 (56)
128 cd07963 Anticodon_Ia_Cys Antic 96.4 0.1 2.2E-06 46.1 13.4 90 323-439 2-91 (156)
129 cd07955 Anticodon_Ia_Cys_like 94.0 0.22 4.8E-06 38.7 6.6 58 323-400 2-60 (81)
130 PLN02486 aminoacyl-tRNA ligase 93.0 0.64 1.4E-05 47.2 9.6 76 37-124 70-147 (383)
131 PRK12556 tryptophanyl-tRNA syn 92.5 0.081 1.8E-06 52.7 2.5 82 41-133 4-86 (332)
132 COG1656 Uncharacterized conser 92.3 0.23 5E-06 43.6 4.7 88 67-170 18-105 (165)
133 PF01927 Mut7-C: Mut7-C RNAse 91.3 0.22 4.7E-06 43.6 3.5 31 67-99 12-42 (147)
134 PRK01233 glyS glycyl-tRNA synt 90.9 1.2 2.5E-05 48.7 9.4 101 332-434 568-677 (682)
135 COG0751 GlyS Glycyl-tRNA synth 90.2 1.8 4E-05 46.7 9.9 101 332-434 577-686 (691)
136 TIGR00211 glyS glycyl-tRNA syn 90.1 1.4 3E-05 48.2 9.1 100 332-433 578-686 (691)
137 PRK12282 tryptophanyl-tRNA syn 89.6 0.62 1.3E-05 46.5 5.6 71 42-124 4-74 (333)
138 PRK12284 tryptophanyl-tRNA syn 88.9 0.38 8.2E-06 49.3 3.5 80 42-132 4-84 (431)
139 PRK14908 glycyl-tRNA synthetas 86.3 4.2 9.2E-05 46.1 9.9 99 332-434 893-997 (1000)
140 PRK00927 tryptophanyl-tRNA syn 84.3 0.52 1.1E-05 47.1 1.6 70 42-124 3-72 (333)
141 PLN02486 aminoacyl-tRNA ligase 82.4 0.9 2E-05 46.2 2.4 64 238-311 221-290 (383)
142 PRK12283 tryptophanyl-tRNA syn 80.2 0.59 1.3E-05 47.4 0.3 70 42-124 4-74 (398)
143 PRK12282 tryptophanyl-tRNA syn 76.1 5.9 0.00013 39.6 6.0 57 236-295 142-209 (333)
144 KOG2145 Cytoplasmic tryptophan 75.7 3.6 7.7E-05 39.6 4.0 45 37-86 82-127 (397)
145 PRK12284 tryptophanyl-tRNA syn 73.7 3.5 7.6E-05 42.4 3.7 57 235-295 147-215 (431)
146 PLN02886 aminoacyl-tRNA ligase 70.5 8.1 0.00018 39.3 5.4 70 42-124 48-117 (389)
147 PRK12283 tryptophanyl-tRNA syn 68.2 14 0.0003 37.7 6.5 32 275-311 256-288 (398)
148 PRK12556 tryptophanyl-tRNA syn 66.2 6.3 0.00014 39.4 3.6 56 236-294 149-214 (332)
149 KOG2623 Tyrosyl-tRNA synthetas 58.2 13 0.00029 37.4 4.1 39 41-83 64-103 (467)
150 PRK00927 tryptophanyl-tRNA syn 55.3 11 0.00024 37.7 3.2 68 236-311 138-220 (333)
151 KOG2144 Tyrosyl-tRNA synthetas 55.0 5.2 0.00011 38.5 0.7 70 42-123 36-110 (360)
152 PLN02886 aminoacyl-tRNA ligase 51.1 13 0.00028 37.9 2.9 17 231-247 179-195 (389)
153 COG2185 Sbm Methylmalonyl-CoA 48.6 35 0.00076 29.5 4.7 82 38-150 11-92 (143)
154 KOG2713 Mitochondrial tryptoph 48.2 28 0.00061 33.6 4.4 76 40-124 13-88 (347)
155 PF03033 Glyco_transf_28: Glyc 46.8 16 0.00036 30.7 2.6 28 55-85 9-36 (139)
156 PF10009 DUF2252: Uncharacteri 43.7 93 0.002 31.8 7.8 89 51-148 48-153 (385)
157 KOG1610 Corticosteroid 11-beta 41.9 1.3E+02 0.0027 29.8 7.9 62 58-120 183-251 (322)
158 COG3171 Uncharacterized protei 37.6 33 0.00072 28.1 2.7 56 115-170 24-87 (119)
159 cd02156 nt_trans nucleotidyl t 36.7 15 0.00033 29.7 0.7 15 44-59 3-17 (105)
160 PF08926 DUF1908: Domain of un 34.9 1.3E+02 0.0027 29.0 6.5 84 368-453 167-250 (282)
161 PF10264 Stork_head: Winged he 33.7 44 0.00095 25.9 2.7 35 420-457 31-65 (80)
162 PF15366 DUF4597: Domain of un 32.1 27 0.00059 24.6 1.2 15 39-53 22-36 (62)
163 TIGR03042 PS_II_psbQ_bact phot 30.2 3E+02 0.0064 23.9 7.5 41 361-403 99-139 (142)
164 COG3286 Uncharacterized protei 29.7 1.1E+02 0.0024 27.8 5.0 27 58-84 85-111 (204)
165 PF14359 DUF4406: Domain of un 29.7 90 0.002 24.8 4.1 33 42-79 1-33 (92)
166 TIGR03590 PseG pseudaminic aci 27.6 53 0.0012 31.7 3.0 41 55-101 14-55 (279)
167 TIGR01501 MthylAspMutase methy 26.6 2.4E+02 0.0052 24.1 6.4 65 63-150 17-81 (134)
168 PRK13671 hypothetical protein; 26.2 2.7E+02 0.0058 27.4 7.5 68 50-123 9-95 (298)
169 PF10137 TIR-like: Predicted n 26.2 1E+02 0.0022 26.0 4.0 40 55-94 4-43 (125)
170 PRK09620 hypothetical protein; 26.1 1.1E+02 0.0025 28.6 4.8 48 38-85 3-53 (229)
171 TIGR00125 cyt_tran_rel cytidyl 26.0 55 0.0012 23.5 2.1 30 49-85 7-36 (66)
172 PF04127 DFP: DNA / pantothena 22.6 79 0.0017 28.7 2.9 31 55-85 23-53 (185)
173 PF12683 DUF3798: Protein of u 22.5 80 0.0017 30.4 2.9 83 15-99 139-223 (275)
174 TIGR00640 acid_CoA_mut_C methy 21.5 2.9E+02 0.0062 23.4 6.0 23 61-83 16-38 (132)
175 KOG2623 Tyrosyl-tRNA synthetas 21.0 2.8E+02 0.006 28.3 6.4 60 235-295 226-286 (467)
176 cd02072 Glm_B12_BD B12 binding 20.4 4.6E+02 0.01 22.2 6.9 66 62-150 14-79 (128)
No 1
>PLN02946 cysteine-tRNA ligase
Probab=100.00 E-value=9.5e-87 Score=685.36 Aligned_cols=429 Identities=65% Similarity=1.129 Sum_probs=383.7
Q ss_pred ccccCcccCCCCCcceeEEecCCcceeecccCCCCcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecC
Q 012397 4 SKETGTVAAPKMDLTLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRN 83 (464)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~ 83 (464)
+.++|+. .....+|+||||++++++.|.|.++++|.+|+||||||+.+||||+|++|.+|+|+|+||..|++|.|+.|
T Consensus 47 ~~~~~~~--~~~~~~l~lyNTltr~ke~f~P~~~~~v~~Y~CGpTvYd~~HIGhaR~~V~~Dvl~R~Lr~~Gy~V~~V~n 124 (557)
T PLN02946 47 LASNGAP--ASRGRELHLYNTMSRKKELFKPKVEGKVGMYVCGVTAYDLSHIGHARVYVTFDVLYRYLKHLGYEVRYVRN 124 (557)
T ss_pred hccCCCc--CCCCCceEEEECCCCCeeccccCCCCceeEEEeCCccCCCCccccchhhHHHHHHHHHHHhcCCcEEEEEC
Confidence 4455554 46667899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCC
Q 012397 84 FTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVE 163 (464)
Q Consensus 84 ~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~~~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~ 163 (464)
+||+|+||+.+|+++|++|++++++|.+.|.++++.|||..++..+++++|++.+++++++|+++|++|++++++|||+.
T Consensus 125 iTDiDDKIi~~A~~~g~~~~ela~~y~~~f~~d~~~LnI~~p~~~pratehi~~ii~~i~~Li~kG~aY~~~g~VYFdv~ 204 (557)
T PLN02946 125 FTDVDDKIIARANELGEDPISLSRRYCEEFLSDMAYLHCLPPSVEPRVSDHIPQIIDMIKQILDNGCAYRVDGDVYFSVD 204 (557)
T ss_pred CCCccCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHCCCCCCCeecCcchhHHHHHHHHHHHHHCCCEEEECCeEEEecC
Confidence 99999999999999999999999999999999999999997888999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCccccccccCCCcccCCcccCcccccccccccCCCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEec
Q 012397 164 KSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGG 243 (464)
Q Consensus 164 ~~~~~g~l~~~~~~~~~~g~~~~~~~~k~~~~d~~~w~~~~~g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G 243 (464)
.++.||+|++..++++..|.+++.+..|++|.||++||..++|++.|+++||.|+|+||+||++|+.+++|.++|||++|
T Consensus 205 ~f~~YG~Ls~~~l~~l~~g~rv~~~~~K~np~DFaLWK~~k~ge~~W~SPWG~GRPGWHIECSaMs~~~lG~~~DIH~GG 284 (557)
T PLN02946 205 KFPEYGKLSGRKLEDNRAGERVAVDSRKKNPADFALWKAAKEGEPFWDSPWGPGRPGWHIECSAMSAAYLGHSFDIHGGG 284 (557)
T ss_pred cchhhhhcCCCChhHhhcCCCCCcccccCCccccceeccCCCCCCCccCCCCCCCCcHHHHHHHHHHHHcCCCeeEeccc
Confidence 99999999999999988899988888899999999999999999999999999999999999999999999999999999
Q ss_pred ccCccccchHHHHHHhhccCCCCccEEEEeeeeeeCCcccccccCCccCHHHHHHhcCchhHHHHHhhcCCCCccCCCHH
Q 012397 244 IDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVL 323 (464)
Q Consensus 244 ~D~~~~h~~~~~a~~~a~~~~~~~~~~~~~~~v~~~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~~~~~~~~f~~~ 323 (464)
.|++||||.+++|+..|+.+.++.++|+|+|||+++|+|||||+||++++.|+++.|++|++|||+++.++.++++|+++
T Consensus 285 ~DL~FPHHENEiAQsea~~g~~~a~yW~H~G~v~~~G~KMSKSlGN~itl~dll~~y~~dalR~~lLs~hyr~~l~fs~e 364 (557)
T PLN02946 285 MDLVFPHHENEIAQSCAACCDSNISYWIHNGFVTVDSEKMSKSLGNFFTIRQVIDLYHPLALRLFLLGTHYRSPINYSDV 364 (557)
T ss_pred cccCCCcccchHHHHHHHhCCCCCceeeEeeEEEeCCCCcCCcCCCcCCHHHHHHhcCccceeeeeeccCCCCCcEecHH
Confidence 99999999999999999888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccccCCCccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhh
Q 012397 324 QLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLN 403 (464)
Q Consensus 324 ~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~ 403 (464)
.+.++.+.+.+++++++++.+.+.+..........+..+...+..+.+.+.++|+|++++|.|++. |+++++.+|++++
T Consensus 365 ~L~~a~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~Al~DDlntp~Al~~-l~~~vk~~N~~~~ 443 (557)
T PLN02946 365 QLESASERIFYIYQTLHDCEESLQQHDSTFEKDSVPPDTLNCINKFHDEFVTSMSDDLHTPVALAA-LSEPLKTINDLLH 443 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccchhhHHHHHHHHHHHHHHHHhccChHHHHHH-HHHHHHHHHHHhh
Confidence 999999999999999999887664321100001112234455677889999999999999999999 9999999999986
Q ss_pred hhcccCchhhhhhHHHHHHHHHHHHHHHHHhhccCC
Q 012397 404 MLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLP 439 (464)
Q Consensus 404 ~~~~~~~~~~~~~r~~~~~~~~~~l~~~l~lLgi~p 439 (464)
.... . ....++..+..+...+..++.+|||.+
T Consensus 444 ~~~~---~-~~~~~~~~l~~~~~~~~~~~~vLGl~~ 475 (557)
T PLN02946 444 TRKG---K-KQEKRLESLAALEKKIRDVLSVLGLMP 475 (557)
T ss_pred hccc---c-cccchHHHHHHHHHHHHHHHHHcCCCc
Confidence 5310 0 011123334556667777889999754
No 2
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-84 Score=645.03 Aligned_cols=376 Identities=52% Similarity=0.889 Sum_probs=353.5
Q ss_pred ceeEEecCCcceeecccCCCCcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHH
Q 012397 18 TLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRAND 97 (464)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~ 97 (464)
.|+||||+||+++.|.|.++++|++|+||||||...||||+|++|..|++.|+|+..|+.|.|+.++.|.++||+.+|.+
T Consensus 1 ~l~iyNTltr~ke~F~P~~~~~V~mYvCGpTVYd~~HIGhaRt~V~fDvl~R~L~~~Gy~V~yV~NiTDIDDKIi~rA~~ 80 (464)
T COG0215 1 MLKLYNTLTRQKEEFVPIDPGKVKMYVCGPTVYDYAHIGHARTYVVFDVLRRYLRYLGYKVTYVRNITDIDDKIINRARE 80 (464)
T ss_pred CcEEEecCccceecccCCCCCeEEEEecCCccCCccccccCcceehHHHHHHHHHHhCCeEEEEeccccccHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchhHHHHHHHHHHHHHCCceEee-cCcEEEcCCCCCCCCCCCCc-c
Q 012397 98 LGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVV-EGDVFFAVEKSPNYGRLSGQ-R 175 (464)
Q Consensus 98 ~g~~~~~~~~~~~~~~~~~l~~lgi~~~~~~~r~s~~~~~~~~~~~~L~~~G~~y~~-~~~~~~~~~~~~~~g~l~~~-~ 175 (464)
.|.++.+++++|..+|.++++.|||..++..||+|+|++.+.+++++|+++|++|.. ++++||++.++++||.||+. .
T Consensus 81 ~g~~~~ev~~~~i~~f~~D~~aL~v~~p~~~PraTe~I~~iI~~I~~LiekG~AY~~~~G~VYFdv~~f~~YG~LS~~~~ 160 (464)
T COG0215 81 EGLSIREVAERYIAAFFEDMDALNVLPPDIEPRATEHIDEIIEFIEKLIEKGYAYVADDGDVYFDVSKFKDYGKLSGRDS 160 (464)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHhCCCCCcccCcHhhCHHHHHHHHHHHHHCCceEEecCCcEEEecccchhhHhhcCCCC
Confidence 999999999999999999999999977899999999999999999999999999998 68999999999999999966 7
Q ss_pred ccccccCCCcccCCcccCcccccccccccCCCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCccccchHHH
Q 012397 176 LENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEI 255 (464)
Q Consensus 176 ~~~~~~g~~~~~~~~k~~~~d~~~w~~~~~g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h~~~~~ 255 (464)
++++..|.++.....|++|.||++||..++|+|.|++|||.|+|+||+||++|+.+++|..+|||++|.|++||||.+.+
T Consensus 161 le~l~~gar~~~~~~Krnp~DFvLWK~sk~gEp~W~SPWG~GRPGWHIECSaM~~~~LG~~~DIHgGG~DLiFPHHENEi 240 (464)
T COG0215 161 LEELQAGARVEVDEEKRNPLDFVLWKAAKPGEPSWDSPWGKGRPGWHIECSAMSTKYLGETFDIHGGGSDLIFPHHENEI 240 (464)
T ss_pred hhHHhhccccccccccCCchhheeeccCCCCCCCCCCCCCCCCCchhHHHHHHHHHHhCCCcceecCcccccCCCcccHH
Confidence 78888899998888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccC-CCCccEEEEeeeeeeCCcccccccCCccCHHHHHHhcCchhHHHHHhhcCCCCccCCCHHHHHHHHHHHHH
Q 012397 256 AQSCAACQ-DSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFY 334 (464)
Q Consensus 256 a~~~a~~~-~~~~~~~~~~~~v~~~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~~~~~~~~f~~~~~~~~~~~l~~ 334 (464)
|+++|+.+ +++.++|+|+|||+++|+|||||+||++++.|++++|+++++||++++++++++++|+++.+.++.+.+.+
T Consensus 241 AQsea~~g~~~~a~yWmH~G~l~i~geKMSKSLGNfiti~d~l~~~~p~~lR~~lls~HYR~pl~fsee~L~~A~~~l~r 320 (464)
T COG0215 241 AQSEAATGVKPFAKYWMHNGFLNIDGEKMSKSLGNFITVRDLLKKYDPEVLRLFLLSSHYRSPLDFSEELLEEAKKALER 320 (464)
T ss_pred HHHHhhhCCCcceeEeEEcceeeecCcCcccccCCeeEHHHHHhhcCHHHHHHHHHHHHhCCccccCHHHHHHHHHHHHH
Confidence 99999988 78899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCccccCCCccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhc
Q 012397 335 IYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLK 406 (464)
Q Consensus 335 l~~~~~~~~~~l~~~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~~ 406 (464)
|.+++.++........ .. .+.++..++.++|+|+|++|.|++. |+++++..|+..+.+.
T Consensus 321 l~~~~~~~~~~~~~~~-----~~-------~~~~~~~~f~~al~DDfnt~~al~~-l~~l~~~~~~~~~~~~ 379 (464)
T COG0215 321 LYNALRRLRDLAGDAE-----LA-------DLKEFEARFREALDDDFNTPKALAV-LFELAKEINRLLEEGK 379 (464)
T ss_pred HHHHHHHHHhhccccc-----cc-------hhHHHHHHHHHHHHhccCcHHHHHH-HHHHHHHHhhhhhccc
Confidence 9999987653322110 00 4567777899999999999999999 9999999877766543
No 3
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3.1e-82 Score=653.81 Aligned_cols=379 Identities=49% Similarity=0.832 Sum_probs=355.0
Q ss_pred cccCCCCCcceeEEecCCcceeecccCCCCcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCcccc
Q 012397 9 TVAAPKMDLTLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVD 88 (464)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g 88 (464)
++|.|+..++|+||||++|+++.|.|.++++|.+|+||||||+.+||||+|++|.+|+++|+||..|++|.|++|+||+|
T Consensus 218 ~~~~~~~~~~l~lyNTltr~ke~f~P~~~~~V~mYvCGPTVYd~~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~NiTD~D 297 (699)
T PRK14535 218 EQQRLIHNPMTTIYNTLTRQKEPFAPIDPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGYPLTYVRNITDID 297 (699)
T ss_pred hhhcccccCceEEEECCCCCeeccccCCCCceEEEecCCcCCCCCcccchhHHHHHHHHHHHHHHcCCceEEEeCCcccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchhHHHHHHHHHHHHHCCceEee-cCcEEEcCCCCCC
Q 012397 89 DKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVV-EGDVFFAVEKSPN 167 (464)
Q Consensus 89 ~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~~~~~~r~s~~~~~~~~~~~~L~~~G~~y~~-~~~~~~~~~~~~~ 167 (464)
+||+.+|++.|+++++++++|...|.++++.|||.+++..+++++|++.+++++++|+++|++|+. .+++|||+.+++.
T Consensus 298 DKII~~A~e~G~sp~ela~~y~~~F~~d~~~LnI~~p~~~praTeHI~~ii~lI~~LidkG~AYe~~~gsVYFdV~~f~~ 377 (699)
T PRK14535 298 DKIIARAAENGETIGELTARFIQAMHEDADALGVLRPDIEPKATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFAA 377 (699)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCcEeeCccchHHHHHHHHHHHHHCCCEEEeCCCCEEEecccccc
Confidence 999999999999999999999999999999999998888899999999999999999999999987 5699999999999
Q ss_pred CCCCCCccccccccCCCcccCCcccCcccccccccccCCCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCc
Q 012397 168 YGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLI 247 (464)
Q Consensus 168 ~g~l~~~~~~~~~~g~~~~~~~~k~~~~d~~~w~~~~~g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~ 247 (464)
||+|++..++++..|.+++.+..|++|.||++||..++|++.|+++||.|+|+||+||++|+.+++|.++|||++|.|++
T Consensus 378 YG~LS~~~~~~l~~g~rve~d~~Krnp~DFaLWK~sk~Gep~W~SPWG~GRPGWHIECSAMs~~~LG~~~DIHgGG~DLi 457 (699)
T PRK14535 378 YGQLSGKSLDDLRAGERVEVDGFKRDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADLQ 457 (699)
T ss_pred cccccCCChHHhcCCCccccccccCCccccceeccCCCCCCCccCCCCCCCCchHHHHHHHHHHHcCCcceeECCccccC
Confidence 99999998988888999888888999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHhhccCC----------------CCccEEEEeeeeeeCCcccccccCCccCHHHHHHhcCchhHHHHHhh
Q 012397 248 FPHHENEIAQSCAACQD----------------SNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLIS 311 (464)
Q Consensus 248 ~~h~~~~~a~~~a~~~~----------------~~~~~~~~~~~v~~~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~ 311 (464)
||||.+.+|++.|+.++ ++.++|+|+|||+++|+|||||+||++++.|+++.|++|++|||+++
T Consensus 458 FPHHENEiAQseA~~g~~~~~~~~~~~~~~~~~~~aryWmHnG~V~vdGeKMSKSLGN~it~~dlLe~ygpdalRl~lLs 537 (699)
T PRK14535 458 FPHHENEIAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFTIREVLKQYDPEVVRFFILR 537 (699)
T ss_pred CCCCccHHHHHHHhhCCCcccccccccccccccccccEEEECCeEeeCCCccCCCCCCcCCHHHHHHhCCHHHHHHHHHc
Confidence 99999999999987554 47899999999999999999999999999999999999999999999
Q ss_pred cCCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHH
Q 012397 312 AHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAF 391 (464)
Q Consensus 312 ~~~~~~~~f~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl 391 (464)
.+++++++|+++.+.++.+.+.+++.++.++... . ..+...+..+.+.+.++|+|++++|.|++. |
T Consensus 538 shYRspL~fS~e~Le~Ak~~l~Rl~~~l~~~~~~-~------------~~~~~~l~~~~~~f~~AL~DDlntp~Ala~-L 603 (699)
T PRK14535 538 AHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPAA-E------------FMLSENVNDYTRRFYAAMNDDFGTVEAVAV-L 603 (699)
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHHHHHHHhhhhc-c------------chhhhhHHHHHHHHHHHHhhccChHHHHHH-H
Confidence 9999999999999999999999998887654210 0 011234556778999999999999999999 9
Q ss_pred HHHHHHHHHH
Q 012397 392 QDALKFINSS 401 (464)
Q Consensus 392 ~~l~~~~n~~ 401 (464)
+++++.+|+.
T Consensus 604 ~~lvk~iN~~ 613 (699)
T PRK14535 604 FELAGEVNKT 613 (699)
T ss_pred HHHHHHHHHH
Confidence 9999999986
No 4
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=100.00 E-value=4.9e-81 Score=644.75 Aligned_cols=398 Identities=52% Similarity=0.894 Sum_probs=371.8
Q ss_pred ceeEEecCCcceeecccCCCCcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHH
Q 012397 18 TLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRAND 97 (464)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~ 97 (464)
+|+||||++|+++.|.|..++++.+|+|||||||++||||+|+++++|+++|++|+.|++|.|++|+||+|++|+.+|++
T Consensus 2 ~l~~~ntl~~~~~~f~p~~~~~v~~yvcgPtvy~~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki~~~A~~ 81 (463)
T PRK00260 2 MLKIYNTLTRQKEEFKPLEPGKVKMYVCGPTVYDYAHIGHARSFVVFDVLRRYLRYLGYKVTYVRNITDIDDKIIKRANE 81 (463)
T ss_pred ceEEEECCCCceeecccCCCCcceEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCceEEeecCCCCcHHHHHHHHH
Confidence 58999999999999999989999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCCCCCCCCCCCcccc
Q 012397 98 LGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLE 177 (464)
Q Consensus 98 ~g~~~~~~~~~~~~~~~~~l~~lgi~~~~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~~g~l~~~~~~ 177 (464)
+|++|++++++|.+.|.+++++|||+.++.++++++|++.+++++++|+++|++|++++++|||+.+++.||.|++..++
T Consensus 82 ~g~~~~e~~~~~~~~f~~~~~~Lgi~~~d~~~r~t~~~~~~~~~i~~L~~kG~aY~~~~~Vyfdv~~~~~yg~ls~~~~~ 161 (463)
T PRK00260 82 EGESIKELTERYIAAFHEDMDALNVLPPDIEPRATEHIPEIIELIERLIDKGHAYEADGDVYFDVRKFPDYGKLSGRNLD 161 (463)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHcCCCCCCccccccccHHHHHHHHHHHHHCCCEEEecCeEEEecccccccccCCCCCHH
Confidence 99999999999999999999999997678999999999999999999999999999999999999999999999999998
Q ss_pred ccccCCCcccCCcccCcccccccccccCCCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCccccchHHHHH
Q 012397 178 NNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257 (464)
Q Consensus 178 ~~~~g~~~~~~~~k~~~~d~~~w~~~~~g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h~~~~~a~ 257 (464)
++..|.+++.+..|++|.||++||..+.|++.|+++||.++|+||++|++|+.+++|.++|||++|+|++||||.+.+|+
T Consensus 162 ~~~~~~~~~~~~~K~~~~DF~Lwk~~~~~~~~w~s~~g~grpgWhiecsam~~~~lg~~~Dih~gG~DlifpHh~neiaq 241 (463)
T PRK00260 162 ELQAGARVEVAEEKRDPLDFALWKAAKPGEPSWESPWGKGRPGWHIECSAMSTKYLGETFDIHGGGADLIFPHHENEIAQ 241 (463)
T ss_pred HHhccCcCCcccCCCCccccceecCCCCCCCCCCCCCCCCCCChhHHHHHHHHHhcCCCcceecCccccCCCchHhHHHH
Confidence 88888888888889999999999999899999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCCCccEEEEeeeeeeCCcccccccCCccCHHHHHHhcCchhHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHHH
Q 012397 258 SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQ 337 (464)
Q Consensus 258 ~~a~~~~~~~~~~~~~~~v~~~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~~~~~~~~f~~~~~~~~~~~l~~l~~ 337 (464)
..++.+++|+++|+|+|++..+|+|||||+||+|+|.|+++.||+|++||++++.++.++++|+++.+.++.+.+.++++
T Consensus 242 s~a~~g~p~~~~w~H~g~v~~~G~KMSKS~GN~i~~~dll~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~a~~~~~rl~~ 321 (463)
T PRK00260 242 SEAATGKPFANYWMHNGFVTVNGEKMSKSLGNFFTIRDLLKKYDPEVLRFFLLSAHYRSPLNFSEEALEQAKKALERLYN 321 (463)
T ss_pred HHHhcCCCcceEEEEccEEccCCCcccCcCCCCCCHHHHHHHcCchHhHHHHHhCCCCCCCccCHHHHHHHHHHHHHHHH
Confidence 99887789999999999999999999999999999999999999999999999989999999999999999999999999
Q ss_pred HHHHHHHhcCccccCCCccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhcccCchhhhhhH
Q 012397 338 TLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSL 417 (464)
Q Consensus 338 ~~~~~~~~l~~~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~~~~~~~~~~~~r 417 (464)
++.++.. ...|++++..+..+.+.+.++|+|+|++|.|++. |+++++.+|++++...
T Consensus 322 ~~~~~~~-----------~~~d~~~~~~l~~~~~~~~~al~ddln~~~Al~~-l~~lv~~~n~~~~~~~----------- 378 (463)
T PRK00260 322 ALAETAL-----------GEDDEALLAELEEFKERFIEAMDDDFNTPEALAV-LFELAREINRALETKD----------- 378 (463)
T ss_pred HHHHhhh-----------ccchhhHHHHHHHHHHHHHHHHHhcccHHHHHHH-HHHHHHHHHHHhhccc-----------
Confidence 9877641 1346788889999999999999779999999999 9999999999986531
Q ss_pred HHHHHHHHHHHHHHHHhhccC
Q 012397 418 IESLRKIENEVKEVLRILGLL 438 (464)
Q Consensus 418 ~~~~~~~~~~l~~~l~lLgi~ 438 (464)
...+..+...+..++.+|||.
T Consensus 379 ~~~~~~~~~~~~~~~~ilG~~ 399 (463)
T PRK00260 379 KEAAAALAALLRALADVLGLE 399 (463)
T ss_pred HHHHHHHHHHHHHHHHhcCCC
Confidence 112445666777788899974
No 5
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=100.00 E-value=1.1e-80 Score=659.07 Aligned_cols=416 Identities=40% Similarity=0.647 Sum_probs=377.7
Q ss_pred CcceeEEecCCcceeecccCCCCcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHH-HCCCeEEEecCCccccHHHHHH
Q 012397 16 DLTLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLE-HLKCEVTYVRNFTDVDDKIIRR 94 (464)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr-~~G~~V~~i~~~dd~g~~i~~~ 94 (464)
+++|+||||+||++++|.|.++++|++|+||||||+.+||||||++|.+|+++|+|| ..|++|.|+.|+||+|+||+.+
T Consensus 37 ~~~l~lyNtlt~~k~~f~p~~~~~v~~Y~CGPTvYd~~HiGhart~v~~Dil~R~l~~~~Gy~V~~v~nitDidDKIi~~ 116 (651)
T PTZ00399 37 LTGLKVNNSLTGGKVEFVPQNGRQVRWYTCGPTVYDSSHLGHARTYVTFDIIRRILEDYFGYDVFYVMNITDIDDKIIKR 116 (651)
T ss_pred CCceEEEECCCCCccccccCCCCeeEEEEeCCCccCCcccccchHHHHHHHHHHHHHHhcCCceEEEeCCCCcchHHHHH
Confidence 468999999999999999999999999999999999999999999999999999999 8999999999999999999999
Q ss_pred HHHcCCC-hHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCCCC----CCC
Q 012397 95 ANDLGEN-PLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSP----NYG 169 (464)
Q Consensus 95 a~~~g~~-~~~~~~~~~~~~~~~l~~lgi~~~~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~----~~g 169 (464)
|++.|++ +.++++.|.+.|.++++.|||.+++..+|+++|++.+++++++|+++|++|+.++++||++..++ .||
T Consensus 117 A~~~g~~~~~el~~~~~~~f~~d~~~Lni~~p~~~~r~tehi~~ii~~i~~Li~~G~aY~~~gsvyFd~~~f~~~~~~Yg 196 (651)
T PTZ00399 117 AREEKLSIFLELARKWEKEFFEDMKALNVRPPDVITRVSEYVPEIVDFIQKIIDNGFAYESNGSVYFDVEAFRKAGHVYP 196 (651)
T ss_pred HHHhCCCcHHHHHHHHHHHHHHHHHHcCCCCCccccCcCccHHHHHHHHHHHHHCCCEEEECCeEEEEchhcccchhhHH
Confidence 9999999 99999999999999999999998899999999999999999999999999999999999999987 899
Q ss_pred CCCC---ccccccccCCC-c-ccCCcccCcccccccccccCCCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecc
Q 012397 170 RLSG---QRLENNRAGER-V-AVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGI 244 (464)
Q Consensus 170 ~l~~---~~~~~~~~g~~-~-~~~~~k~~~~d~~~w~~~~~g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~ 244 (464)
+|++ .....+..|.+ + +....|++|.||++|+..++|++.|+++||.|+|+||++|++|+..++|.++|||.+|.
T Consensus 197 ~L~p~~~~~~~~~~~g~~~l~~~~~~Kr~~~DFaLWk~~kpgep~W~SpwG~GrPGWHiECsam~~~~lg~~~DIh~gG~ 276 (651)
T PTZ00399 197 KLEPESVADEDRIAEGEGALGKVSGEKRSPNDFALWKASKPGEPSWDSPWGKGRPGWHIECSAMASNILGDPIDIHSGGI 276 (651)
T ss_pred hhChhhcCCHHHHhcccCCccccCcCCCCCccHHhhCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHcCCcceeeccCC
Confidence 9985 33344445654 4 33346899999999999999999999999999999999999999999999999999999
Q ss_pred cCccccchHHHHHHhhccCC-CCccEEEEeeeeeeCCcccccccCCccCHHHHHHhcCchhHHHHHhhcCCCCccCCCHH
Q 012397 245 DLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVL 323 (464)
Q Consensus 245 D~~~~h~~~~~a~~~a~~~~-~~~~~~~~~~~v~~~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~~~~~~~~f~~~ 323 (464)
|++||||.+.+|++.|+.+. ++.++|+|+|||+++|+|||||+||+|+|.|+++.||+|++|||+++.+++++++|+++
T Consensus 277 DL~FPHHeNEiAQseA~~~~~~~v~y~~H~G~L~i~G~KMSKSLGNfItp~dlLekygaDaLR~~lLs~~~~~dldFS~e 356 (651)
T PTZ00399 277 DLKFPHHDNELAQSEAYFDKHQWVNYFLHSGHLHIKGLKMSKSLKNFITIRQALSKYTARQIRLLFLLHKWDKPMNYSDE 356 (651)
T ss_pred CCCCCcchhHHHHHHHhhCCCCCCcEEEEEEEEEeccchhhhcCCCcccHHHHHHHcChHHHHHHHHhcCCCCCCccCHH
Confidence 99999999999999999876 89999999999999999999999999999999999999999999998899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccccC--CCccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHH
Q 012397 324 QLDSASDAVFYIYQTLQDCEVALSPFQEH--GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSS 401 (464)
Q Consensus 324 ~~~~~~~~l~~l~~~~~~~~~~l~~~~~~--~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~ 401 (464)
.+.++.+...++.+.+.++.+.+.+.... ....+.|++|+..+.++.+.|.++|+++++++.|+.. |+++++.+|+|
T Consensus 357 ~l~~a~~~~~~l~n~~~rl~s~l~~~~~~~~~~~~~~d~~Ll~~l~~~~~~v~~Am~Ddfnt~~Al~~-L~eLv~~~N~y 435 (651)
T PTZ00399 357 SMDEAIEKDKVFFNFFANVKIKLRESELTSPQKWTQHDFELNELFEETKSAVHAALLDNFDTPEALQA-LQKLISATNTY 435 (651)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHHHHHH
Confidence 99999998888888888887765432110 1123567889999999999999999778999999999 99999999999
Q ss_pred hhhhcccCchhhhhhHHHHHHHHHHHHHHHHHhhccCCC
Q 012397 402 LNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPP 440 (464)
Q Consensus 402 ~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~l~lLgi~p~ 440 (464)
++.. ...++.++..+..+|..++.+|||.++
T Consensus 436 i~~~--------~~~~~~ll~~v~~~l~~~l~ILGl~~~ 466 (651)
T PTZ00399 436 LNSG--------EQPSAPLLRSVAQYVTKILSIFGLVEG 466 (651)
T ss_pred Hhcc--------ccchHHHHHHHHHHHHHHHhcccCCcc
Confidence 9621 123566778899999999999998653
No 6
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=100.00 E-value=4.9e-81 Score=622.54 Aligned_cols=368 Identities=36% Similarity=0.612 Sum_probs=340.5
Q ss_pred cCCCCCcceeEEecCCcceeecccCCCCcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHH
Q 012397 11 AAPKMDLTLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDK 90 (464)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~ 90 (464)
+.|+.+++|+||||++|+++.|.| +++|.+|+||||||+++||||+|++|.+|+++|+||+.|++|.|++|+||||+|
T Consensus 10 ~~~~~~~~l~lyntlt~~~~~f~p--~~~v~~YvCGpTvY~~~HIGhart~V~~Dvl~R~lr~~G~~V~fV~nitD~dDK 87 (411)
T TIGR03447 10 ALPGTGPPLRLFDTADGQVRPVEP--GPEAGMYVCGITPYDATHLGHAATYLTFDLVNRVWRDAGHRVHYVQNVTDVDDP 87 (411)
T ss_pred CCCCCCCceEEEECCCCCeeeccC--CCcceEEEeCCccCCCcccccchHHHHHHHHHHHHHhcCCceEEeeCCCchhHH
Confidence 346678899999999999999998 789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchhHHHHHHHHHHHHHCCceEeecC----cEEEcCCCCC
Q 012397 91 IIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEG----DVFFAVEKSP 166 (464)
Q Consensus 91 i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~~~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~----~~~~~~~~~~ 166 (464)
|+.+|+++|++|++++++|...|.++++.|||..++.++|+|++++.+++++++|+++|++|+.++ ++||++..++
T Consensus 88 Ii~~A~~~g~t~~ela~~y~~~f~~d~~~Lni~~~d~~~RaTe~i~~ii~~i~~L~~kG~aY~~~~~~~~~VYFdv~~~~ 167 (411)
T TIGR03447 88 LFERAERDGVDWRELGTSQIDLFREDMEALRVLPPRDYIGAVESIDEVIEMVEKLLAAGAAYEVEGPEYPDVYFSIEATE 167 (411)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCCcccCCCCCHHHHHHHHHHHHHCCCEEecCCCCcCcEEEeccchh
Confidence 999999999999999999999999999999998779999999999999999999999999998886 8999999999
Q ss_pred CCCCCCCcccccccc--CCC-cccCC-cccCcccccccccccCCCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEe
Q 012397 167 NYGRLSGQRLENNRA--GER-VAVDS-RKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGG 242 (464)
Q Consensus 167 ~~g~l~~~~~~~~~~--g~~-~~~~~-~k~~~~d~~~w~~~~~g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~ 242 (464)
.||.|++..++++.. +.+ ++.+. .|++|.||++||..++|++.|+++||.|+|+||+||++|+.+++|.++|||++
T Consensus 168 ~YG~Ls~~~~~~~~~~~~~~~~~~~~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~Dih~G 247 (411)
T TIGR03447 168 QFGYESGYDRATMLELFAERGGDPDRPGKRDPLDALLWRAAREGEPSWDSPFGPGRPGWHIECSAIATNRLGAGFDIQGG 247 (411)
T ss_pred ccccccCCCHHHHHhhhcccccCcccccCCCCcccceeCCCCCCCCCccCCCCCCCChhHHHHHHHHHHHcCCceecccC
Confidence 999999988888765 444 55433 59999999999999999999999999999999999999999999999999999
Q ss_pred cccCccccchHHHHHHhhccCC-CCccEEEEeeeeeeCCcccccccCCccCHHHHHHh-cCchhHHHHHhhcCCCCccCC
Q 012397 243 GIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITER-YHPLALRHFLISAHYRSPLNY 320 (464)
Q Consensus 243 G~D~~~~h~~~~~a~~~a~~~~-~~~~~~~~~~~v~~~G~KmSks~gn~i~~~dll~~-~~~dalR~~ll~~~~~~~~~f 320 (464)
|.|++||||.+++++..|+.++ +++++|+|+|++..+|+|||||+||+|++.|+++. ++++++|||+++.++.++++|
T Consensus 248 G~DLifpHheneiaq~~A~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN~i~~~dl~~~g~dp~~lRl~lls~~Yr~pl~f 327 (411)
T TIGR03447 248 GSDLIFPHHEFSAAHAEAATGVRRMARHYVHAGMIGLDGEKMSKSLGNLVFVSKLRAAGVDPAAIRLGLLAGHYRQDRDW 327 (411)
T ss_pred cccccccchHhHHHHHHHhcCCCCcceEEEECCEECcCCCCccCcCCCCCCHHHHHhcCCCcccEEEEEecCCCCCCCcc
Confidence 9999999999999999998776 99999999999999999999999999999999986 999999999998899999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHH
Q 012397 321 SVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINS 400 (464)
Q Consensus 321 ~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~ 400 (464)
+++.+.++.+.+.++.+++.++. .+ .+..+...+.++|+|++++|.|++. |+++++.+|.
T Consensus 328 s~e~l~~a~~~l~rl~~~~~~~~------------~~-------~~~~~~~~~~~al~dDln~p~a~~~-l~~~~~~~n~ 387 (411)
T TIGR03447 328 TDAVLAEAEARLARWRAALAATD------------AP-------DATDLIARLRQHLANDLDTPAALAA-VDNWAAAALS 387 (411)
T ss_pred CHHHHHHHHHHHHHHHHHHhhcc------------cc-------hHHHHHHHHHHHHHhcCChHHHHHH-HHHHHHHHHh
Confidence 99999999999999888775421 00 1335567888999999999999999 9999988776
No 7
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.5e-80 Score=632.14 Aligned_cols=382 Identities=36% Similarity=0.631 Sum_probs=346.6
Q ss_pred ceeEEecCCcceeecccCCCCcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEec----------CCccc
Q 012397 18 TLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVR----------NFTDV 87 (464)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~----------~~dd~ 87 (464)
+|+||||+++++++|.|..+++|++|+||||||+++||||+|++|.+|+++|+||..|++|.|++ ++|+|
T Consensus 2 ~l~lyntlt~~ke~f~p~~~~~v~mYvCGpTvy~~~HiGhar~~v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~~~De~ 81 (490)
T PRK14536 2 ALRLYNTLGRQQEEFQPIEHGHVRLYGCGPTVYNYAHIGNLRTYVFQDTLRRTLHFLGYRVTHVMNITDVGHLTDDADSG 81 (490)
T ss_pred ceEEEecCCCCeeccccCCCCceEEEeeCCccCCCcccchhHHHHHHHHHHHHHHhcCCceEEEEeeccccccccCCcCC
Confidence 38999999999999999999999999999999999999999999999999999999999999997 44555
Q ss_pred cHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCCCCC
Q 012397 88 DDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPN 167 (464)
Q Consensus 88 g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~~~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~ 167 (464)
|+||+.+|+++|++|++++++|...|.++++.|||.+++.++|+++|++.+++++++|+++|++|+.++++|||+..|+.
T Consensus 82 ddKii~~A~~~g~~~~e~a~~~~~~f~~d~~~Lni~~~~~~~rat~hi~~ii~~i~~L~~kG~aY~~~~~vyFdv~~~~~ 161 (490)
T PRK14536 82 EDKMVKSAQEHGKSVLEIAAHYTAAFFRDTARLNIERPSIVCNATEHIQDMIALIKRLEARGHTYCAGGNVYFDIRTFPS 161 (490)
T ss_pred ChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCceecCcccHHHHHHHHHHHHHHCCCEEEECCeEEEeCCcccc
Confidence 99999999999999999999999999999999999988999999999999999999999999999999999999999999
Q ss_pred CCCCCCccccccccCCCcccCCcccCccccccccccc--CC-CCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecc
Q 012397 168 YGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAK--AG-EPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGI 244 (464)
Q Consensus 168 ~g~l~~~~~~~~~~g~~~~~~~~k~~~~d~~~w~~~~--~g-~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~ 244 (464)
||.|++..++++..|.+++.+..|++|.||++||..+ .+ .++|+++||.|+|+||++|++|+.+++|..+|||++|.
T Consensus 162 YG~Ls~~~~~~l~~g~~v~~~~~K~np~DFaLWK~~~~~~~~~~~W~SpWG~GRPGWHIECsaMs~~~lg~~~DIH~GG~ 241 (490)
T PRK14536 162 YGSLASAAVEDLQAGARIEHDTNKRNPHDFVLWFTRSKFENHALTWDSPWGRGYPGWHIECSAMSMKYLGEQCDIHIGGV 241 (490)
T ss_pred hhhhcCCCHHHhhcCCcCCCCCCCCCchhchhcccccCCCCCCCcccCCCCCCCCChHHHHHHHHHHHcCCceeEEeccc
Confidence 9999999999888898887777899999999998754 33 57999999999999999999999999999999999999
Q ss_pred cCccccchHHHHHHhhccCCCCccEEEEeeeeeeCCcccccccCCccCHHHHHHh-cCchhHHHHHhhcCCCCccCCCHH
Q 012397 245 DLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITER-YHPLALRHFLISAHYRSPLNYSVL 323 (464)
Q Consensus 245 D~~~~h~~~~~a~~~a~~~~~~~~~~~~~~~v~~~G~KmSks~gn~i~~~dll~~-~~~dalR~~ll~~~~~~~~~f~~~ 323 (464)
|++||||.+++|++.|+.+.+++++|+|+|+++++|+|||||+||+|++.|+++. ++++++||++++.++.++++|+++
T Consensus 242 DliFPHHeneiAqs~a~~g~~~~~~w~h~g~l~~~g~KMSKSlGN~itl~dll~~g~~~~alR~~lls~~yr~~l~Fs~e 321 (490)
T PRK14536 242 DHIRVHHTNEIAQCEAATGKPWVRYWLHHEFLLMNKGKMSKSAGQFLTLSSLQEKGFQPLDYRFFLLGGHYRSQLAFSWE 321 (490)
T ss_pred cCCCcchhhHHHHHHHhcCCCcceEEEEcCEEeecCccccccCCCcccHHHHHhcCCCHHHHHHHHHhCCCCCCCCCCHH
Confidence 9999999999999999888899999999999999999999999999999999998 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccccC--C----C-ccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHH
Q 012397 324 QLDSASDAVFYIYQTLQDCEVALSPFQEH--G----K-TARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALK 396 (464)
Q Consensus 324 ~~~~~~~~l~~l~~~~~~~~~~l~~~~~~--~----~-~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~ 396 (464)
.+.++.+.+.+|++++.++.......... . . .......+...+..+.+.+.++|+|++++|.|++. |+++++
T Consensus 322 ~l~~a~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~al~dDlntp~Al~~-l~~~~~ 400 (490)
T PRK14536 322 ALKTAKAARRSLVRRVARVVDAARATTGSVRGTLAECAAERVAESRASESELLLTDFRAALEDDFSTPKALSE-LQKLVK 400 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccccchhhhhHHHHHHHHHHHHHhcCChHHHHHH-HHHHHH
Confidence 99999999999999988775433211000 0 0 00001112234567788999999999999999999 999999
Q ss_pred HHHH
Q 012397 397 FINS 400 (464)
Q Consensus 397 ~~n~ 400 (464)
.+|.
T Consensus 401 ~~n~ 404 (490)
T PRK14536 401 DTSV 404 (490)
T ss_pred Hhhh
Confidence 8885
No 8
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=100.00 E-value=8.4e-80 Score=633.86 Aligned_cols=399 Identities=49% Similarity=0.842 Sum_probs=359.6
Q ss_pred eeEEecCCcceeecccCCCCcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHc
Q 012397 19 LKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDL 98 (464)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~ 98 (464)
|+||||+||+++.|.|..++++.+|+||||||+++||||+|++|.+|+++|+||++|++|.|++|+||+|+||+.+|+++
T Consensus 1 l~lyntlt~~~e~f~p~~~~~v~~yvcgptvy~~~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkIi~~A~~~ 80 (465)
T TIGR00435 1 LKLYNTLTRQKEEFEPLVQGKVKMYVCGPTVYDYCHIGHARTAIVFDVLRRYLRYLGYKVQYVQNITDIDDKIIKRAREN 80 (465)
T ss_pred CeeEeCCCCCeeccccCCCCcceEEEecCccCCCcccccchHHHHHHHHHHHHHHcCCcEEEEEeeCCccHHHHHHHHHc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchhHHHHHHHHHHHHHCCceEeec-CcEEEcCCCCCCCCCCCCcccc
Q 012397 99 GENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVE-GDVFFAVEKSPNYGRLSGQRLE 177 (464)
Q Consensus 99 g~~~~~~~~~~~~~~~~~l~~lgi~~~~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~-~~~~~~~~~~~~~g~l~~~~~~ 177 (464)
|++|++++++|...|.+++++|||++++.++++++|++.+++++++|+++|++|+.+ +++|||+.+++.||+|++..++
T Consensus 81 g~~~~e~a~~~~~~f~~dl~~LgI~~d~~~~raT~hi~~i~~~i~~L~ekG~aY~~~~g~vyfdv~~~~~yG~ls~~~~~ 160 (465)
T TIGR00435 81 GESVYEVSERFIEAYFEDMKALNVLPPDLEPRATEHIDEIIEFIEQLIEKGYAYVSDNGDVYFDVSKFKDYGKLSKQDLD 160 (465)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCCCCcCCccccccHHHHHHHHHHHHHCCCEEEecCCcEEEeccccchhccCCCCCHH
Confidence 999999999999999999999999977778899999999999999999999999998 9999999999999999998888
Q ss_pred ccccCCCcccCCcccCcccccccccccCCCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCccccchHHHHH
Q 012397 178 NNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257 (464)
Q Consensus 178 ~~~~g~~~~~~~~k~~~~d~~~w~~~~~g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h~~~~~a~ 257 (464)
++..|.+++.+..|++|.||++||..++|++.|+++||.|+|+||++|++|+.+++|.++|||++|.|++||||.+++++
T Consensus 161 ~~~~~~~~~~~~~K~~p~DF~Lwk~~~~~~~~w~spwG~grpgWhiecsam~~~~lg~~~Dih~gG~Dl~fpHhene~aq 240 (465)
T TIGR00435 161 QLEAGARVDVDEAKRNKLDFVLWKSSKEGEPKWDSPWGKGRPGWHIECSAMNDKYLGDQIDIHGGGVDLIFPHHENEIAQ 240 (465)
T ss_pred HHhcccccCcccccCCCCCceeeCCCCCCCCCCcCCCCCCCCCcHhHHHHHHHHhcCCCceeeccccccccchHHHHHHH
Confidence 88888888887889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCCCccEEEEeeeeeeCCcccccccCCccCHHHHHHhcCchhHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHHH
Q 012397 258 SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQ 337 (464)
Q Consensus 258 ~~a~~~~~~~~~~~~~~~v~~~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~~~~~~~~f~~~~~~~~~~~l~~l~~ 337 (464)
..++.+++|+++|+|+|+++++|+|||||+||+|++.|+++.|++|++|||+++.++.++++|+++.+.++.+.+.+|++
T Consensus 241 s~a~~g~~~~~~~~h~g~v~~~g~KMSKS~GN~i~~~dll~~~~~dalR~~ll~~~~~~~l~fs~~~l~~a~~~~~rl~~ 320 (465)
T TIGR00435 241 SEAAFGKQLAKYWMHNGFLMIDNEKMSKSLGNFFTVRDVLKNYDPEILRYFLLSVHYRSPLDFSEELLEAAKNALERLYK 320 (465)
T ss_pred HHHhcCCCCCcEEEEeeEEEecCccccccCCCcCCHHHHHHHCCHHHHHHHHHhCCCCCCCccCHHHHHHHHHHHHHHHH
Confidence 99988889999999999999999999999999999999999999999999999989999999999999999999999999
Q ss_pred HHHHHHHhcCccccCCCccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHH-HHhhhhcccCchhhhhh
Q 012397 338 TLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFIN-SSLNMLKKKQPKQQQLS 416 (464)
Q Consensus 338 ~~~~~~~~l~~~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n-~~~~~~~~~~~~~~~~~ 416 (464)
++.++........ . .+..+......+.+.+.++|+|++++|.|++. |+++++.+| ...+. .
T Consensus 321 ~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~f~~al~dDlnt~~a~~~-l~~~~~~~n~~~~~~-----------~ 382 (465)
T TIGR00435 321 ALRVLDTTLAYSG----N--QSLNKFPDEKEFEARFVEAMDDDLNTANALAV-LFELAKSINLTFVSK-----------A 382 (465)
T ss_pred HHHHHHhhhcccc----c--cccccchhHHHHHHHHHHHHhhccCHHHHHHH-HHHHHHHhhhhhcch-----------H
Confidence 9987754332110 0 01001122345678899999999999999999 999999999 43310 0
Q ss_pred HHHHHHHHHHHHHHHHHhhccC
Q 012397 417 LIESLRKIENEVKEVLRILGLL 438 (464)
Q Consensus 417 r~~~~~~~~~~l~~~l~lLgi~ 438 (464)
. +..+...+..+..+||++
T Consensus 383 ~---~~~~~~~~~~l~~~lg~~ 401 (465)
T TIGR00435 383 D---AALLIEHLIFLESRLGLL 401 (465)
T ss_pred H---HHHHHHHHHHHHHhcccC
Confidence 1 223445566667788854
No 9
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.2e-77 Score=609.29 Aligned_cols=381 Identities=31% Similarity=0.527 Sum_probs=341.3
Q ss_pred ceeEEecCCcceeecccCCCCcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccc----------
Q 012397 18 TLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDV---------- 87 (464)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~---------- 87 (464)
+|+||||+||+++.|.|. ++|.+|+||||||..+||||+|++|.+|+++|+||.+|++|.|+.++.|.
T Consensus 2 ~l~lynTltr~ke~f~p~--~~v~mY~CGpTVYd~~HiGh~r~~v~~Dvl~R~l~~~G~~V~~v~NiTDIghltg~~D~g 79 (481)
T PRK14534 2 LLKLYNTKTKDLSELKNF--SDVKVYACGPTVYNYAHIGNFRTYIFEDLLIKSLRLLKYNVNYAMNITDIGHLTGDFDDG 79 (481)
T ss_pred ceEEEEcCCCCeeecccC--CceEEEeCCCCCCCCCCccchhHHHHHHHHHHHHHHcCCceEEEEeccccccccCCccCC
Confidence 489999999999999985 79999999999999999999999999999999999999999996555444
Q ss_pred cHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCCCCC
Q 012397 88 DDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPN 167 (464)
Q Consensus 88 g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~~~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~ 167 (464)
|+||+.+|+++|+++++++++|...|.++++.|||.+++..+++++|++.+++++++|+++|++|+.++++|||+.+++.
T Consensus 80 ddKIi~~A~~~g~~~~e~a~~~~~~f~~d~~~Lni~~~~~~p~atehi~~~i~~i~~L~~kG~aY~~~~~vyFdv~~~~~ 159 (481)
T PRK14534 80 EDKVVKAARERGLTVYEISRFFTEAFFDDCKKLNIVYPDKVLVASEYIPIMIEVVKVLEENGFTYFVNGNVYFDTSCFKS 159 (481)
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCceecCccchHHHHHHHHHHHHHCCCEEEECCeEEEecccccc
Confidence 88999999999999999999999999999999999988888999999999999999999999999999999999999999
Q ss_pred CCCCCCccccccc--cCCCcccCCcccCcccccccccc---cCCCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEe
Q 012397 168 YGRLSGQRLENNR--AGERVAVDSRKRNPADFALWKAA---KAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGG 242 (464)
Q Consensus 168 ~g~l~~~~~~~~~--~g~~~~~~~~k~~~~d~~~w~~~---~~g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~ 242 (464)
||.+++.+++++. .|.+++.+..|++|.||++||.. ++++++|+++||.|+|+||++|++|+.+++|.++|||++
T Consensus 160 YG~ls~~~l~~l~~~~~~~v~~~~~K~np~DFaLWK~~~~~~~~~~~w~spWG~GrPgWHiECsam~~~~lg~~~DIH~G 239 (481)
T PRK14534 160 YGQMAGINLNDFKDMSVSRVEIDKSKRNKSDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFKSTLDIHLG 239 (481)
T ss_pred hhhhcCCCHHHHhhhccCcCCcccCCCCcccchhcCcCCcCCCCCCeecCCCCCcCCcHHHHHHHHHHHHcCCcceEEec
Confidence 9999999998876 68888887789999999999864 678899999999999999999999999999999999999
Q ss_pred cccCccccchHHHHHHhhccCCCCccEEEEeeeeeeCCcccccccCCccCHHHHHHh-cCchhHHHHHhhcCCCCccCCC
Q 012397 243 GIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITER-YHPLALRHFLISAHYRSPLNYS 321 (464)
Q Consensus 243 G~D~~~~h~~~~~a~~~a~~~~~~~~~~~~~~~v~~~G~KmSks~gn~i~~~dll~~-~~~dalR~~ll~~~~~~~~~f~ 321 (464)
|+|++||||.+++|+++++.+.+++++|+|+||++++|+|||||+||++++.|+++. ++++++||++++.++.++++|+
T Consensus 240 G~DliFPHHene~Aqs~a~~g~~~~~~W~H~g~l~~~g~KMSKSlGN~i~l~dll~~~~~~~alR~~lls~~yr~~l~Fs 319 (481)
T PRK14534 240 GVDHIGVHHINEIAIAECYLNKKWCDMFVHGEFLIMEYEKMSKSNNNFITIKDLEDQGFSPLDFRYFCLTAHYRTQLKFT 319 (481)
T ss_pred ccccCCCcchhHHHHHhhhcCCCcceEEEEecEEEecCceecccCCCcccHHHHHhcCCChhHHHHHHHhCCCCCCCCCC
Confidence 999999999999999999888899999999999999999999999999999999996 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHH
Q 012397 322 VLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSS 401 (464)
Q Consensus 322 ~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~ 401 (464)
++.+.++.+.+.++++++.++...+............+.........+.+.+.++|+|++++|.|++. |+++++.+|+.
T Consensus 320 ~e~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~Al~DDlNtp~Al~~-l~~~~k~~n~~ 398 (481)
T PRK14534 320 FNNLKACKIARENMLNKLTYFYSSLDQFDLNLLNKDLENIEFSLEKEYYDSFLEKIAFDLNIPQGLAL-LWDIIKDDNLS 398 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccchhhhHHHHHHHHHHHHhhcCChHHHHHH-HHHHHHHHHHh
Confidence 99999999999999998876643332110000000001000112345667899999999999999999 99999999974
No 10
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.3e-76 Score=586.97 Aligned_cols=354 Identities=35% Similarity=0.587 Sum_probs=324.6
Q ss_pred ccCCCC-cceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHH
Q 012397 33 TPIVRG-KVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQ 111 (464)
Q Consensus 33 ~~~~~~-~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~ 111 (464)
+|.+++ ++.+|+||||||+++||||+|++|.+|+++|+||.+|++|.|++|+||+|+||+.+|+++|++|++++++|.+
T Consensus 2 ~p~~~~~~v~~YvCGpTvY~~~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~nitD~ddKIi~~A~~~G~~~~e~a~~~~~ 81 (384)
T PRK12418 2 RPVAPGGTATMYVCGITPYDATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNVTDVDDPLLERAARDGVDWRDLAEREIA 81 (384)
T ss_pred cCCCCCCeeEEEecCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEEecCCcchHHHHHHHHcCCCHHHHHHHHHH
Confidence 466777 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCcchhHHHHHHHHHHHHHCCceEeecC----cEEEcCCCCCCCCCCCCcccccccc--CCC-
Q 012397 112 EYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEG----DVFFAVEKSPNYGRLSGQRLENNRA--GER- 184 (464)
Q Consensus 112 ~~~~~l~~lgi~~~~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~----~~~~~~~~~~~~g~l~~~~~~~~~~--g~~- 184 (464)
.|.++++.|||..++.++|+|++++.+++++++|+++|++|++++ ++||++...+.||.|++..++++.. +.+
T Consensus 82 ~f~~d~~~Lni~~~~~~~raTe~i~~~~~~i~~L~~kG~aY~~~~~~~~~VYFdv~~~~~YG~ls~~~~~~~~~~~~~~~ 161 (384)
T PRK12418 82 LFREDMEALRVLPPRDYVGAVESIPEVVELVEKLLASGAAYVVDDEEYPDVYFSVDATPQFGYESGYDRATMLELFAERG 161 (384)
T ss_pred HHHHHHHHhCCCCCCccccCCCCHHHHHHHHHHHHHCCCEEEeCCCCCccEEEecCchhhcccccCCCHHHHHhhhcccc
Confidence 999999999986679999999999999999999999999999988 8999999999999999988888765 554
Q ss_pred ccc-CCcccCcccccccccccCCCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCccccchHHHHHHhhccC
Q 012397 185 VAV-DSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQ 263 (464)
Q Consensus 185 ~~~-~~~k~~~~d~~~w~~~~~g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h~~~~~a~~~a~~~ 263 (464)
++. +..|++|.||++||..++|++.|+++||.|+|+||+||++|+.+++|.++|||++|.|++||||.+++++..++.+
T Consensus 162 ~~~~~~~K~~p~DFaLWK~~~~~~~~w~spwG~GRPGWHiECsam~~~~lg~~~DIH~GG~DL~FPHHeneiaq~~a~~g 241 (384)
T PRK12418 162 GDPDRPGKRDPLDALLWRAARPGEPSWPSPFGPGRPGWHIECSAIALNRLGSGFDIQGGGSDLIFPHHEFSAAHAEAATG 241 (384)
T ss_pred cCcccccCCCcccceeeccCCCCCCcccCCCCCCCChhHHHHHHHHHHHcCCCcccccCccccccchhHhHHHHHHHhcC
Confidence 344 3359999999999999899999999999999999999999999999999999999999999999999999999877
Q ss_pred C-CCccEEEEeeeeeeCCcccccccCCccCHHHHHHh-cCchhHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHHHHHHH
Q 012397 264 D-SNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITER-YHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQD 341 (464)
Q Consensus 264 ~-~~~~~~~~~~~v~~~G~KmSks~gn~i~~~dll~~-~~~dalR~~ll~~~~~~~~~f~~~~~~~~~~~l~~l~~~~~~ 341 (464)
. +++++|+|+|++..+|+|||||+||+|++.++++. ++++++|||+++.+++++++|+++.+.++.+.+.++++++.+
T Consensus 242 ~~~~~~~w~H~g~l~~~G~KMSKSlGN~i~~~ell~~G~d~~~lR~~lls~~yr~~l~fs~e~l~~a~~~l~r~~~~~~~ 321 (384)
T PRK12418 242 ERRFARHYVHAGMIGLDGEKMSKSRGNLVFVSRLRAAGVDPAAIRLALLAGHYRADREWTDAVLAEAEARLARWRAAAAL 321 (384)
T ss_pred CCCcceEEEECCEECCCCCcccCcCCCcCCHHHHHhccCChhheeEEEeccCCCCCcccCHHHHHHHHHHHHHHHHHHhc
Confidence 5 99999999999999999999999999999999874 777799999998899999999999999999999998887754
Q ss_pred HHHhcCccccCCCccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhc
Q 012397 342 CEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLK 406 (464)
Q Consensus 342 ~~~~l~~~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~~ 406 (464)
.. .+ .+.++.+.+.++|+|++++|.|++. |+++++.+|.|....+
T Consensus 322 ~~------------~~-------~~~~~~~~f~~al~dDlnt~~a~~~-l~~~~~~~n~~~~~~~ 366 (384)
T PRK12418 322 PA------------GP-------DAADVVARVRAALADDLDTPGALAA-VDGWATDALEGGGDDA 366 (384)
T ss_pred cc------------cc-------hHHHHHHHHHHHHHhcCChHHHHHH-HHHHHHHHHhccCCCc
Confidence 20 00 2345678899999999999999999 9999999999975443
No 11
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.3e-76 Score=573.97 Aligned_cols=416 Identities=45% Similarity=0.741 Sum_probs=368.6
Q ss_pred CCCCCcceeEEecCCcceeecccCCCCcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHH-HCCCeEEEecCCccccHH
Q 012397 12 APKMDLTLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLE-HLKCEVTYVRNFTDVDDK 90 (464)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr-~~G~~V~~i~~~dd~g~~ 90 (464)
..+.++.+++||++||+|+.|.|.++++|++|+||||+|..-||||||++|..|+|.|+|+ ..||+|.|+.++.|.|+|
T Consensus 28 ~~~~~~~L~lYNslTr~Ke~fip~~~~~v~wY~CGpTvYD~SHmGHArsYVsfDIlrRiL~dyfgy~V~~vmNiTDVDDK 107 (586)
T KOG2007|consen 28 NAGQPTELKLYNSLTRQKEVFIPNNGNKVTWYICGPTVYDSSHMGHARSYVSFDILRRILRDYFGYDVTFVMNITDVDDK 107 (586)
T ss_pred CCCCCCeEEEeeccccccceeeeCCCCeEEEEEecCcccchhhhhhhhhhhhHHHHHHHHHHHcCcceEEEecccchhHH
Confidence 3678899999999999999999999999999999999999999999999999999999999 699999999999999999
Q ss_pred HHHHHH-----HcCCChHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCCC
Q 012397 91 IIRRAN-----DLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS 165 (464)
Q Consensus 91 i~~~a~-----~~g~~~~~~~~~~~~~~~~~l~~lgi~~~~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~ 165 (464)
|+.||+ +.+.++.+.-..|.++|.+++.+|++-+|+..+|.|+|++.+..++++++++|++|..++++||++..+
T Consensus 108 II~RAr~~~m~e~~~~l~~~F~~~e~eF~~DM~~LnvLpPtv~tRVSeyvp~II~fIqkIIdnG~aY~~dGsVYFdv~kf 187 (586)
T KOG2007|consen 108 IIKRARKEEMGEKPLSLSERFCYYEEEFLQDMAALNVLPPTVQTRVSEYVPQIIKFIQKIIDNGYAYAVDGSVYFDVDKF 187 (586)
T ss_pred HHHHhhhhhhccchhhHHHHHHHHHHHHHHHHHHhCCCCCcccchhhhchHHHHHHHHHHHhCCceeeeCCcEEEecccc
Confidence 999997 334444444346889999999999999999999999999999999999999999999999999999999
Q ss_pred C-CCCCCCCccccccccCCCcccCCcccCcccccccccccCCCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecc
Q 012397 166 P-NYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGI 244 (464)
Q Consensus 166 ~-~~g~l~~~~~~~~~~g~~~~~~~~k~~~~d~~~w~~~~~g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~ 244 (464)
+ .||+++|.. +.+.+|+....+..|++|.||++||+.++|+|+|.++||.|+|+|||+|++|+..++|..+|||.+|.
T Consensus 188 ~~~YgKL~G~~-~~~~~gEg~l~ds~KR~p~DFALWKAsK~gEP~WeSPWG~GRPGWHIECSaMas~~lG~~lDIH~GG~ 266 (586)
T KOG2007|consen 188 PHSYGKLVGQR-KNLQEGEGVLSDSRKRSPADFALWKASKPGEPSWESPWGKGRPGWHIECSAMASAILGSQLDIHGGGI 266 (586)
T ss_pred cchhhhhcCch-hhcccCcCccccccCCChhhhhhhhhcCCCCCCCCCCCCCCCCCceeeeHHHHHHhhccccceecCcc
Confidence 8 599999754 56666766666677999999999999999999999999999999999999999999999999999999
Q ss_pred cCccccchHHHHHHhhccC-CCCccEEEEeeeeeeCCcccccccCCccCHHHHHHhcCchhHHHHHhhcCCCCccCCCHH
Q 012397 245 DLIFPHHENEIAQSCAACQ-DSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVL 323 (464)
Q Consensus 245 D~~~~h~~~~~a~~~a~~~-~~~~~~~~~~~~v~~~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~~~~~~~~f~~~ 323 (464)
|+.||||.+.+|+..|... .+|.++|+|+|+++++|.|||||++|+|++.|+++.|+|+++|++++.+.+.++++|+..
T Consensus 267 DL~FPHHeNEiAQ~eA~~~~~~wVnYflHtGhL~i~g~KMSKSLkNFiTIke~Lk~~sp~qLRl~fl~~~wr~~ldYs~s 346 (586)
T KOG2007|consen 267 DLAFPHHENEIAQSEAAFDDSQWVNYFLHTGHLTINGEKMSKSLKNFITIKEALKKYSPRQLRLAFLLHQWRSPLDYSDS 346 (586)
T ss_pred cccCCCcccHHHHHHHHhcCCccceeEEEcCeeeeccchhhhhhccceeHHHHHHhcCHHHHHHHHHHHHhcCcCCchHH
Confidence 9999999999999999876 569999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHhcCccccCCCccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHH
Q 012397 324 QLDSASD---AVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINS 400 (464)
Q Consensus 324 ~~~~~~~---~l~~l~~~~~~~~~~l~~~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~ 400 (464)
.|..+.. .++++++.++ .+.+...+.....+.|..|.+.+....++|+.+++|+++.+.++.. +.+++...|.
T Consensus 347 ~m~~a~q~e~~~~~ff~~~~---al~~~~~~~~~~~~~e~~l~~~~~~t~~~vh~al~d~~dT~~v~~~-~~~lvs~~N~ 422 (586)
T KOG2007|consen 347 TMEQALQLEKSLNNFFLDVK---ALLRGAKPFEKLSEKEAELLEDFGKTQTAVHAALCDNFDTPRVMEA-IRELVSQGNA 422 (586)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHhccchhhccChHHHHHHHhhhhHHHHHHHHHHhccccHHHHHH-HHHHHhhhhH
Confidence 8876654 3444444433 2322221112345677899999999999999999999999999999 9999999999
Q ss_pred HhhhhcccCchhhhhhHHHHHHHHHHHHHHHHHhhccCC
Q 012397 401 SLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLP 439 (464)
Q Consensus 401 ~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~l~lLgi~p 439 (464)
|+.... ......++.++...|..++.++|+.+
T Consensus 423 ~i~~~~-------~~~~~~~L~~I~~yIt~~l~ifG~~e 454 (586)
T KOG2007|consen 423 YIRESG-------ERPNSALLKAIASYITKLLKIFGLSE 454 (586)
T ss_pred HHHHhc-------cccchHHHHHHHHHHHHHHHHhCCCc
Confidence 997654 11234677888889999999999765
No 12
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=100.00 E-value=9.8e-74 Score=542.50 Aligned_cols=299 Identities=60% Similarity=1.048 Sum_probs=257.6
Q ss_pred cccCCCCcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHH
Q 012397 32 FTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQ 111 (464)
Q Consensus 32 ~~~~~~~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~ 111 (464)
|+|.++++|++|+||||||..+||||+|++|..|+|.|+|+..|++|.++.++.|.++||+.+|++.|+++.+++++|.+
T Consensus 1 F~p~~~~~v~~Y~CGPTVYd~~HiGhaR~~v~~D~l~R~L~~~g~~V~~V~NiTDiDDKii~~A~~~g~~~~ela~~y~~ 80 (300)
T PF01406_consen 1 FKPLNPGKVRMYVCGPTVYDYAHIGHARTYVFFDVLRRYLEYLGYDVTYVMNITDIDDKIIKRAREEGVSPQELARRYEE 80 (300)
T ss_dssp ---SCTTEEEEEEEEEBTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEB-SSHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred CcCCCCCeEEEEcCCCCCCCCCCCcceeeeeeHHHHHHHHHHcCCeEEEEEeccccchHHHHHHHhccCCHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCcchhHHHHHHHHHHHHHCCceEeec-CcEEEcCCCCCCCCCCCCccccccccCCCcccCCc
Q 012397 112 EYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVE-GDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSR 190 (464)
Q Consensus 112 ~~~~~l~~lgi~~~~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~-~~~~~~~~~~~~~g~l~~~~~~~~~~g~~~~~~~~ 190 (464)
+|.+++++|||..++.++|+|+|++.+++++++|+++|++|+.. +++||++.+++.||+|++..++++..|.+++.+..
T Consensus 81 ~f~~dm~~Lnv~~p~~~prate~i~~ii~~i~~Li~~G~AY~~~~g~VYFdv~~~~~YG~Ls~~~~~~l~~~~~~~~~~~ 160 (300)
T PF01406_consen 81 EFFEDMKALNVLPPDHYPRATEHIPEIIELIEKLIDKGHAYESEDGSVYFDVSKFPDYGKLSNQDLEDLEAGARVEVDYE 160 (300)
T ss_dssp HHHHHHHHTT----SEEEEGGGGHHHHHHHHHHHHHTTSEEEETTSEEEE-CCGSTTTTTTTT-SHHHHHHCHHHTT-TT
T ss_pred HHHHHHHHcCCCCCccccchhccHHHHHHHHHHHHHCCCeEEcCCCcEEEeeccccccccccccchhhHHhhhhcccccc
Confidence 99999999999998999999999999999999999999999998 99999999999999999999998888888877788
Q ss_pred ccCcccccccccccCCCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCccccchHHHHHHhhccCCCCccEE
Q 012397 191 KRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYW 270 (464)
Q Consensus 191 k~~~~d~~~w~~~~~g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h~~~~~a~~~a~~~~~~~~~~ 270 (464)
|++|.||++||..+.|++.|+++||.|+|+||+||++|+.+++|.++|||++|.|++||||.+.+|++.|+.++++.++|
T Consensus 161 K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lG~~~DIH~GG~DL~FPHHENEiAqs~a~~g~~~a~~W 240 (300)
T PF01406_consen 161 KRNPRDFALWKAAKPGEPSWDSPWGKGRPGWHIECSAMSMKYLGDTFDIHGGGIDLIFPHHENEIAQSEAATGKPFANYW 240 (300)
T ss_dssp SSSTT-EEEEEE--TTS--B--TTSSEEE-HHHHHHHHHHHHHTTSEEEEEEEGGGTTTHHHHHHHHHHHHHSS-SEEEE
T ss_pred cCCCcceeeeecccccCCcccCCCccCcCceeeehHHHHHHHcCCCceEEccccccCCCCccchHHHHHHhhCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred EEeeeeeeCCcccccccCCccCHHHHHHhcCchhHHHHHhhcCCCCccCCCHHHHHHHHH
Q 012397 271 MHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASD 330 (464)
Q Consensus 271 ~~~~~v~~~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~~~~~~~~f~~~~~~~~~~ 330 (464)
+|+|+++++|+|||||+||+++++|+++.|+++++||++++++++++++|+++.+.++.|
T Consensus 241 ~H~g~l~~~g~KMSKSlgN~~~i~dll~~~~~~~lR~~~l~~hYr~~l~~s~~~l~~A~n 300 (300)
T PF01406_consen 241 MHNGHLNVDGEKMSKSLGNFITIRDLLKKYSPDALRLFLLSTHYRKPLNFSEENLEEAKN 300 (300)
T ss_dssp EEE--EEETTCE--TTTT---BHHHHHTTS-HHHHHHHHHTS-TTS-EEE-HHHHHHHH-
T ss_pred HHHHHHhhcCccccccCCCEEEHHHHhhcCCHHHHHHHHhcCCCCCccccCHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999998865
No 13
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6e-69 Score=553.56 Aligned_cols=410 Identities=19% Similarity=0.191 Sum_probs=334.1
Q ss_pred eEEEeCCCCC--CcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q 012397 41 GMYVCGVTAY--DLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMA 118 (464)
Q Consensus 41 ~v~~~~P~p~--G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~ 118 (464)
+++||+|.|| |+|||||++++|.||++||++|++|++|.|++|+|+||++|+.+|+++|++|++++++++..+.++++
T Consensus 6 ~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~g~tP~el~d~~~~~~~~~~~ 85 (558)
T COG0143 6 KILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKEGITPQELVDKNHEEFKELFK 85 (558)
T ss_pred cEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 4566665555 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCCCcc--hhHHHHHHHHHHHHHCCceEeecCcEEEcCCC------------CCCCC-------------C-
Q 012397 119 DLQCLPPTYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEK------------SPNYG-------------R- 170 (464)
Q Consensus 119 ~lgi~~~~~~~r~s--~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~------------~~~~g-------------~- 170 (464)
.|+|++ |.|.||+ +|.+.+|++|++|.++|+||.++.++|||+.| ||.|| +
T Consensus 86 ~l~Isf-D~F~rTt~~~h~~~vq~~f~~L~~~G~I~~~~~~~~Yc~~~e~fl~dr~v~g~cp~cg~~~arGD~Ce~Cg~~ 164 (558)
T COG0143 86 ALNISF-DNFIRTTSPEHKELVQEFFLKLYENGDIYLREYEGLYCVSCERFLPDRYVEGTCPKCGGEDARGDQCENCGRT 164 (558)
T ss_pred HhCCcc-cccccCCCHHHHHHHHHHHHHHHHCCCEeccceeeeEcccccccccchheeccCCCcCccccCcchhhhccCc
Confidence 999995 8898887 78999999999999999999999999999884 66666 2
Q ss_pred CCCcccccc---ccCCCcccCC------------------cccCccccccccc------------ccCCCCcc-cCCCCC
Q 012397 171 LSGQRLENN---RAGERVAVDS------------------RKRNPADFALWKA------------AKAGEPSW-DSPWGP 216 (464)
Q Consensus 171 l~~~~~~~~---~~g~~~~~~~------------------~k~~~~d~~~w~~------------~~~g~~~~-~~~wg~ 216 (464)
+++.++... .+|.+.++.. ++.+| ++..... .++-.+|| +..||+
T Consensus 165 ~~P~~l~~p~~~i~g~~p~~r~~~hyFf~L~~~~~~L~~~~~~~~-~~~~p~~~~ne~~~~i~~GL~d~~IsR~~~~WGi 243 (558)
T COG0143 165 LDPTELINPVCVISGATPEVREEEHYFFRLSKFQDKLLEWYESNP-DFIWPANRRNEVLNFLKEGLKDLSITRTDLDWGI 243 (558)
T ss_pred CCchhcCCCeeEeeCCCcccccceeEEEEHHHhHHHHHHHHHhCc-cccCChHHHHHHHHHHHccCcccceecCCCCCCc
Confidence 333332222 2344332211 11222 3322111 12234688 779999
Q ss_pred CCCc--------hhhHHHHH---------------HHhhcCC--CeeEEEecccCccccchHHHHHHhhccCCCCccEEE
Q 012397 217 GRPG--------WHIECSAM---------------SAHYLSS--KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWM 271 (464)
Q Consensus 217 ~~P~--------w~~~~~~~---------------~~~~~~~--~~~i~~~G~D~~~~h~~~~~a~~~a~~~~~~~~~~~ 271 (464)
++|+ |+++...+ ..++|.. .-.+|++|||+++||.++|||++++++.+.|.+++.
T Consensus 244 pvP~~p~kv~YVWfDAligYisa~~~~~~~~~~~~~~~~W~~~~~e~vhfIGKDii~FHav~wPamL~~~~~~lP~~i~a 323 (558)
T COG0143 244 PVPGDPGKVIYVWFDALIGYISALGELAEIGDDEDFKKFWPADDTELVHFIGKDIIRFHAVYWPAMLMAAGLPLPTRIFA 323 (558)
T ss_pred cCCCCCCCEEEEeeccHHHHHHHhcchhccCChHHHHhhCCCCCceEEEEeccccCcchhhHHHHHHHhCCCCCCCEEEe
Confidence 9995 87664221 2234422 123999999999999999999999999888888855
Q ss_pred EeeeeeeCCcccccccCCccCHHHHHHhcCchhHHHHHhhc-CCCCccCCCHHHHHHHHHH--HHHHHHHHHHHHHhcCc
Q 012397 272 HNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASDA--VFYIYQTLQDCEVALSP 348 (464)
Q Consensus 272 ~~~~v~~~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~-~~~~~~~f~~~~~~~~~~~--l~~l~~~~~~~~~~l~~ 348 (464)
|||++++|+|||||+||+|++.++++.+|+|++|||+++. |.++|.+|+++.+.+.+|. .+.+.|.+.|+.+.+.+
T Consensus 324 -hg~l~~~G~KmSKSrG~~V~~~~~~~~~~~D~lRYyL~~~~p~~~D~dFs~~~f~~rvN~dL~n~lgNl~~R~~~fi~k 402 (558)
T COG0143 324 -HGFLTLEGQKMSKSRGNVVDPDELLEQYGVDALRYYLARELPEGSDGDFSWEDFVERVNADLANKLGNLANRTLGFINK 402 (558)
T ss_pred -eeeEEECCccccccCCcEEeHHHHHHHcCchHhHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6999999999999999999999999999999999999997 9999999999999998775 44555556666666666
Q ss_pred cccCCCc------cCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhcccCchhhh-hhHHH-H
Q 012397 349 FQEHGKT------ARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQ-LSLIE-S 420 (464)
Q Consensus 349 ~~~~~~~------~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~~~~~~~~~~-~~r~~-~ 420 (464)
+.++... .+.|+.++..+.++...+.++| +.+.+++|+.. +++++...|+|++..+||...++. .+|+. +
T Consensus 403 ~~~g~vp~~~~~~~~~d~~~~~~~~~~~~~~~~~~-e~~~~~~Al~~-i~~l~~~~N~Yi~~~~PW~l~k~~~~~~~~~v 480 (558)
T COG0143 403 YFDGVVPAAGAPDLEEDEELLALAREALEAVAEAM-EKYEFRKALEE-IMALASRANKYIDEQAPWKLAKEDKRERLATV 480 (558)
T ss_pred ccCCcCCccccccchhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHH-HHHHHHHHHHHhhcCCCchhhccCcHHHHHHH
Confidence 5443221 1466789999999999999999 99999999999 999999999999999999976542 45655 5
Q ss_pred HHHHHHHHHHHHHhhc-cCCCccHHHHHHHhhhhHhH
Q 012397 421 LRKIENEVKEVLRILG-LLPPGAYSEVKTAFLVLLHV 456 (464)
Q Consensus 421 ~~~~~~~l~~~l~lLg-i~p~~~~e~i~~~l~~~~~~ 456 (464)
+..+.++++.+..+|. |+|. +|++||++|+.....
T Consensus 481 l~~~~~~~r~la~ll~P~mP~-~a~ki~~~L~~~~~~ 516 (558)
T COG0143 481 LYLALELVRVLAILLYPFMPE-TAEKIWDQLGLEEDA 516 (558)
T ss_pred HHHHHHHHHHHHHHhcCcCcc-hHHHHHHHhCCcccc
Confidence 7889999999999999 9999 999999999986444
No 14
>PLN02610 probable methionyl-tRNA synthetase
Probab=100.00 E-value=1.5e-63 Score=539.11 Aligned_cols=411 Identities=13% Similarity=0.095 Sum_probs=324.0
Q ss_pred CcceEEEeCCCCC--CcCCcccch-hHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHH
Q 012397 38 GKVGMYVCGVTAY--DLSHLGHAR-AAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYL 114 (464)
Q Consensus 38 ~~~~v~~~~P~p~--G~lHiGHar-~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~ 114 (464)
++-.+++|+|.|| |+|||||++ +++.+|+++|++|++|++|+|++|+|+||++|+.+|.++|++|++++++|++.|.
T Consensus 15 ~~~~~~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~~g~~p~e~~d~~~~~~~ 94 (801)
T PLN02610 15 GKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALEENCTPKEICDKYHAIHK 94 (801)
T ss_pred CCCCEEEeCCCCCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3445666665555 999999999 5788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCCCcc--hhHHHHHHHHHHHHHCCceEeecCcEEEcCCC------------CCC--CCC--------
Q 012397 115 VDMADLQCLPPTYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEK------------SPN--YGR-------- 170 (464)
Q Consensus 115 ~~l~~lgi~~~~~~~r~s--~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~------------~~~--~g~-------- 170 (464)
+.++++||++ |.|.||+ +|.+.++++|.+|.++|+||++.++++||+.| ||. ||.
T Consensus 95 ~~~~~l~i~~-D~f~rT~~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~~e~fl~d~~v~G~CP~~~C~~~~a~Gd~C 173 (801)
T PLN02610 95 EVYDWFDISF-DKFGRTSTPQQTEICQAIFKKLMENNWLSENTMQQLYCDTCQKFLADRLVEGTCPTEGCNYDSARGDQC 173 (801)
T ss_pred HHHHHcCCcc-ccCccCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCCCcchHHhcCcCCccccCccccccchh
Confidence 9999999996 7888877 68899999999999999999999999999884 777 652
Q ss_pred ------CCCccccccc---cCCCcccCC------------------cccCc------cc---cc-cccc--ccCCCCccc
Q 012397 171 ------LSGQRLENNR---AGERVAVDS------------------RKRNP------AD---FA-LWKA--AKAGEPSWD 211 (464)
Q Consensus 171 ------l~~~~~~~~~---~g~~~~~~~------------------~k~~~------~d---~~-~w~~--~~~g~~~~~ 211 (464)
+.+.++.+.. +|..+.... ++.++ .. .. -|.. ..+-.++|+
T Consensus 174 e~Cg~~~~p~eLi~p~c~~~g~~~~~~~~~~~ff~Ls~~~~~L~~~~~~~~~~~~~~~n~~~~~~~~l~~gL~d~~IsR~ 253 (801)
T PLN02610 174 EKCGKLLNPTELIDPKCKVCKNTPRIRDTDHLFLELPLLKDKLVEYINETSVAGGWSQNAIQTTNAWLRDGLKPRCITRD 253 (801)
T ss_pred hhccccCChhhhcCCcccCCCCcceEEEcceEEEEhHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHhCCCCCcceeee
Confidence 1222222221 233322110 00010 00 00 0211 123356888
Q ss_pred CCCCCCCCc----------hhhHHHHH----------HHhhcCCCee---EEEecccCccccchHHHHHHhhccCC--CC
Q 012397 212 SPWGPGRPG----------WHIECSAM----------SAHYLSSKFD---IHGGGIDLIFPHHENEIAQSCAACQD--SN 266 (464)
Q Consensus 212 ~~wg~~~P~----------w~~~~~~~----------~~~~~~~~~~---i~~~G~D~~~~h~~~~~a~~~a~~~~--~~ 266 (464)
.+||+++|. |+++...+ ...+|..+-+ +|++|+||++||.++||+++++++.+ .|
T Consensus 254 ~~WGipvP~~~~~~~v~YVWfDAl~~Yis~~~~~~~~~~~~W~~~~~~~~~hfiGKDi~~fH~i~wPa~L~a~g~~~~~p 333 (801)
T PLN02610 254 LKWGVPVPLEKYKDKVFYVWFDAPIGYVSITACYTPEWEKWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTMM 333 (801)
T ss_pred cCCcccCCCCCCCCcEEEEehhhHHHHHHHHhhhhhHHHHhcCCcccceEEEEEeeecchhHHHHHHHHHHhCCCCcCCC
Confidence 899999982 88764222 1234543324 89999999999999999999999864 56
Q ss_pred ccEEEEeeeeeeCCcccccccCCccCHHHHHHh-cCchhHHHHHhhc-CCCCccCCCHHHHHHHHHH--HHHHHHHHHHH
Q 012397 267 VSYWMHNGHVTNNNEKMSKSLGNFFTIRQITER-YHPLALRHFLISA-HYRSPLNYSVLQLDSASDA--VFYIYQTLQDC 342 (464)
Q Consensus 267 ~~~~~~~~~v~~~G~KmSks~gn~i~~~dll~~-~~~dalR~~ll~~-~~~~~~~f~~~~~~~~~~~--l~~l~~~~~~~ 342 (464)
.++++ |||++++|+|||||+||+|+|.++++. ||+|++||||++. +.++|.+|+++.+.+..|. .+++.|.+.|+
T Consensus 334 ~~i~~-~g~l~~eG~KMSKS~GNvV~p~~~i~~~yg~D~lRyyLl~~~p~~~D~dFs~~~f~~~~NsdL~n~lGNlv~R~ 412 (801)
T PLN02610 334 KTISV-TEYLNYEGGKFSKSKGVGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWADLQAKLNSELLNNLGNFINRV 412 (801)
T ss_pred CEEEe-ccCEecCCceecCcCCcccCHHHHHhccCCchHhHHHhhhcCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67644 799999999999999999999999995 9999999999997 8999999999999988765 44455555555
Q ss_pred HHhcC----ccccCCC-------ccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhcccCch
Q 012397 343 EVALS----PFQEHGK-------TARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPK 411 (464)
Q Consensus 343 ~~~l~----~~~~~~~-------~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~~~~~~~ 411 (464)
.+.+. ++..+.. ..+.|++++.++.++.+++.++| ++++++.|+.. ++++++.+|+|++..+||...
T Consensus 413 ~~~i~~~~~k~~~g~vp~~~~~~~~~~d~~Ll~~~~~~i~~v~~~m-e~~~~~~Al~~-I~~l~~~~NkYIe~~kPW~L~ 490 (801)
T PLN02610 413 LSFIAKPPGAGYGSVIPDAPGAESHPLTKKLAEKVGKLVEQYVEAM-EKVKLKQGLKT-AMSISSEGNAYLQESQFWKLY 490 (801)
T ss_pred HHHHHhhhhhccCCcCCCccccccchhhHHHHHHHHHHHHHHHHHH-HhcCHHHHHHH-HHHHHHHHHHHHHhcCchhhh
Confidence 55444 2332221 12347899999999999999999 99999999999 999999999999999999864
Q ss_pred hhh-hhHHHHHHHHHHHHHHHHHhhc-cCCCccHHHHHHHhhhh
Q 012397 412 QQQ-LSLIESLRKIENEVKEVLRILG-LLPPGAYSEVKTAFLVL 453 (464)
Q Consensus 412 ~~~-~~r~~~~~~~~~~l~~~l~lLg-i~p~~~~e~i~~~l~~~ 453 (464)
+.+ +....++..+.++|+.++.+|. |+|+ +|++||++|+.+
T Consensus 491 k~d~~~l~~vl~~~le~lr~la~LL~PfmP~-~aeeI~~~Lg~~ 533 (801)
T PLN02610 491 KEDKPSCAIVVKTSVGLVYLLACLLEPFMPS-FSKEVLKQLNLP 533 (801)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhCcccH-HHHHHHHHhCCC
Confidence 433 3334567888999999999999 9999 999999999965
No 15
>PLN02224 methionine-tRNA ligase
Probab=100.00 E-value=1.8e-63 Score=524.08 Aligned_cols=403 Identities=18% Similarity=0.176 Sum_probs=313.5
Q ss_pred EEEeCC--CCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q 012397 42 MYVCGV--TAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMAD 119 (464)
Q Consensus 42 v~~~~P--~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 119 (464)
+++++| +|+|+|||||+++++++|+++|++|++|++|.|++|+||||++|+.+|.++|++|.++|++|+..|.+.+++
T Consensus 71 ~~ittp~pY~NG~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~~~g~~p~e~~~~~~~~~~~~~~~ 150 (616)
T PLN02224 71 FVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAAANGRNPPEHCDIISQSYRTLWKD 150 (616)
T ss_pred EEEeCCCCCCCCCCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHHHHcCCChHHHHHHHHHHHHHHHHH
Confidence 455544 555999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCcc--hhHHHHHHHHHHHHHCCceEeecCcEEEcCCCCCCCCCCCCcccc----ccccCCCcccC-----
Q 012397 120 LQCLPPTYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLE----NNRAGERVAVD----- 188 (464)
Q Consensus 120 lgi~~~~~~~r~s--~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~~g~l~~~~~~----~~~~g~~~~~~----- 188 (464)
|||++ |.+.||+ +|.+.++++|.+|.++|+||+++.+++||+.|. .+. ...++. ...+|..+...
T Consensus 151 l~I~~-D~f~rTt~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~ce-~f~--~~~~l~~~~~~~~~~~~~~~~~e~~~ 226 (616)
T PLN02224 151 LDIAY-DKFIRTTDPKHEAIVKEFYARVFANGDIYRADYEGLYCVNCE-EYK--DEKELLENNCCPVHQMPCVARKEDNY 226 (616)
T ss_pred cCCCC-CcCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeecCCCC-CCC--CHHHHcCCCCCCCCCCcceEEecceE
Confidence 99985 8888887 589999999999999999999999999987742 111 111110 00112222110
Q ss_pred -----C--------cccCcccccc----------ccc--ccCCCCcccC-CCCCCCCc--------hhhHHHHHHH--h-
Q 012397 189 -----S--------RKRNPADFAL----------WKA--AKAGEPSWDS-PWGPGRPG--------WHIECSAMSA--H- 231 (464)
Q Consensus 189 -----~--------~k~~~~d~~~----------w~~--~~~g~~~~~~-~wg~~~P~--------w~~~~~~~~~--~- 231 (464)
. +..++ ++.. |.. ..+-.++|+. +||+++|. |+++...+.. .
T Consensus 227 ff~Ls~~~~~L~~~~~~~~-~~~~p~~~~~~~~~~l~~gL~d~~ISR~~~~WGIpvP~~~~~viYVWfDAl~~Yls~~~~ 305 (616)
T PLN02224 227 FFALSKYQKPLEDILAQNP-RFVQPSYRLNEVQSWIKSGLRDFSISRALVDWGIPVPDDDKQTIYVWFDALLGYISALTE 305 (616)
T ss_pred EEEhHHHHHHHHHHHHhCC-CccCCHHHHHHHHHHHhcCCCCccccCCCCCCceECCCCCCcEEEEehhhHHHHHHHhcc
Confidence 0 01122 1111 111 1233468874 89999984 8877533211 0
Q ss_pred -----------hcCCCeeEEEecccCccccchHHHHHHhhccCCCCccEEEEeeeeeeCCcccccccCCccCHHHHHHhc
Q 012397 232 -----------YLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERY 300 (464)
Q Consensus 232 -----------~~~~~~~i~~~G~D~~~~h~~~~~a~~~a~~~~~~~~~~~~~~~v~~~G~KmSks~gn~i~~~dll~~~ 300 (464)
.++++.++|++|+|+++||+++|++++++.+.+.|..+++ |||++++|+|||||+||+|+|.|+++.|
T Consensus 306 ~~~~~~~~~~~~~~w~~~v~~iGKDii~fH~i~wpa~l~~~g~~~P~~i~~-~g~l~~eG~KMSKS~GN~i~p~e~l~~y 384 (616)
T PLN02224 306 DNKQQNLETAVSFGWPASLHLIGKDILRFHAVYWPAMLMSAGLELPKMVFG-HGFLTKDGMKMGKSLGNTLEPFELVQKF 384 (616)
T ss_pred cccccccchhhccCCCcceEEEeecccccHHHHHHHHHHHCCCCCCcEEEe-cccEecCCccccccCCccCCHHHHHHHc
Confidence 1235789999999999999999999999887777777755 6999999999999999999999999999
Q ss_pred CchhHHHHHhhc-CCCCccCCCHHHHHHHHHH--HHHHHHHHHHHHHhcCccccCCC-----ccCCChhHHHHHHHHHHH
Q 012397 301 HPLALRHFLISA-HYRSPLNYSVLQLDSASDA--VFYIYQTLQDCEVALSPFQEHGK-----TARINPAAEDCINKLRDE 372 (464)
Q Consensus 301 ~~dalR~~ll~~-~~~~~~~f~~~~~~~~~~~--l~~l~~~~~~~~~~l~~~~~~~~-----~~~~d~~l~~~l~~~~~~ 372 (464)
|+|++||||++. ++.+|.+|+++.+.+..|. ...+.|.+.|+.+.+.+...+.. ....+++++.++++++++
T Consensus 385 gaD~~R~yLl~~~p~~~d~~fs~~~~~~~~NseLan~lgNll~R~l~~~~k~~~~~~~~~~~~~~~d~~l~~~l~~li~~ 464 (616)
T PLN02224 385 GPDAVRYFFLREVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGLLKKNCESTLVEDSTVAAEGVPLKDTVEKLVEK 464 (616)
T ss_pred CcHHHHHHHHhcCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCccccccccHHHHHHHHHHHHH
Confidence 999999999997 8899999999998766442 33333444343333333222111 134468899999999999
Q ss_pred HHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhcccCchhh---hhhH-HHHHHHHHHHHHHHHHhhc-cCCCccHHHHH
Q 012397 373 FHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQ---QLSL-IESLRKIENEVKEVLRILG-LLPPGAYSEVK 447 (464)
Q Consensus 373 v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~~~~~~~~~---~~~r-~~~~~~~~~~l~~~l~lLg-i~p~~~~e~i~ 447 (464)
+.++| ++++++.|+.. ++++++.+|+|++.++||...+. +..+ ...+.++.++|+.+..+|. |+|+ +||+||
T Consensus 465 v~~~m-e~~~~~~Al~~-i~el~~~~N~Yi~~~~PW~l~k~~~~~~~~~~~~l~~l~e~lr~~a~LLaPf~P~-~Ae~I~ 541 (616)
T PLN02224 465 AQTNY-ENLSLSSACEA-VLEIGNAGNTYMDQRAPWFLFKQGGVSAEEAAKDLVIILEVMRVIAVALSPIAPC-LSLRIY 541 (616)
T ss_pred HHHHH-HhccHHHHHHH-HHHHHHHHHHHHHhCCchhhhccccccHHHHHHHHHHHHHHHHHHHHHHhccccH-HHHHHH
Confidence 99999 99999999999 99999999999999999964322 1223 4456789999999999999 9999 999999
Q ss_pred HHhhhh
Q 012397 448 TAFLVL 453 (464)
Q Consensus 448 ~~l~~~ 453 (464)
++|+.+
T Consensus 542 ~~Lg~~ 547 (616)
T PLN02224 542 SQLGYS 547 (616)
T ss_pred HHhCCC
Confidence 999975
No 16
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.2e-62 Score=519.11 Aligned_cols=401 Identities=19% Similarity=0.225 Sum_probs=321.0
Q ss_pred CcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 012397 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDM 117 (464)
Q Consensus 38 ~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l 117 (464)
++..|..++|+|||.+||||+|+++.+|+++|++|++|++|.+++|+||||++|+.+|+++|+++.+++++|...|.+++
T Consensus 1 ~~~~i~~~~P~~~g~~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l 80 (511)
T PRK11893 1 KKFYITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEEAGISPQELADRNSAAFKRLW 80 (511)
T ss_pred CCEEEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 35677888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCCCCcc--hhHHHHHHHHHHHHHCCceEeecCcEEEcCCC---------------CCCCCCC-----CCc-
Q 012397 118 ADLQCLPPTYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEK---------------SPNYGRL-----SGQ- 174 (464)
Q Consensus 118 ~~lgi~~~~~~~r~s--~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~---------------~~~~g~l-----~~~- 174 (464)
+.+||++ |.+.+++ .|.+.+++++.+|.++|++|++++.+|||+.| |..||.- ++.
T Consensus 81 ~~l~I~~-D~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~l~~~~p~~~~~~~~~~~~~~~~~ 159 (511)
T PRK11893 81 EALNISY-DDFIRTTDPRHKEAVQEIFQRLLANGDIYLGKYEGWYCVRCEEFYTESELIEDGYRCPPTGAPVEWVEEESY 159 (511)
T ss_pred HHhCCCc-CCceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeccccccccCCHHHhcCCCCCCCCCCCcceEEecCeE
Confidence 9999985 7777776 48999999999999999999999999999886 5556531 000
Q ss_pred ---------cccccccC--CCcccCC--------cccCcccccccccccCCCCcccCCCCCCCCc--------hhhHHHH
Q 012397 175 ---------RLENNRAG--ERVAVDS--------RKRNPADFALWKAAKAGEPSWDSPWGPGRPG--------WHIECSA 227 (464)
Q Consensus 175 ---------~~~~~~~g--~~~~~~~--------~k~~~~d~~~w~~~~~g~~~~~~~wg~~~P~--------w~~~~~~ 227 (464)
.+.+...+ .++..+. .+.+..|+++|+. +..||+++|+ |+.+...
T Consensus 160 f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~~~D~~isR~--------~~~WGipiP~~~~~~~~vWfda~~~ 231 (511)
T PRK11893 160 FFRLSKYQDKLLELYEANPDFIQPASRRNEVISFVKSGLKDLSISRT--------NFDWGIPVPGDPKHVIYVWFDALTN 231 (511)
T ss_pred EEEcHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHCCCCCcccCCC--------CCCCCccCCCCCCceEEEEecCcHH
Confidence 01111111 0110000 0112234444431 5579999885 6543211
Q ss_pred -------------H---HHhhcCCCeeEEEecccCccccchHHHHHHhhccCCCCccEEEEeeeeeeCCcccccccCCcc
Q 012397 228 -------------M---SAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFF 291 (464)
Q Consensus 228 -------------~---~~~~~~~~~~i~~~G~D~~~~h~~~~~a~~~a~~~~~~~~~~~~~~~v~~~G~KmSks~gn~i 291 (464)
+ ...+| +.|+|++|+|+++||++++++++.+++.+.| +.+++|||++++|+|||||+||+|
T Consensus 232 y~s~~~~p~~~~~~~~~~~~~~--~~D~~~~G~D~~~~h~~~~~a~~~a~~~~~p-~~~~~~g~v~~~G~KMSKS~GN~i 308 (511)
T PRK11893 232 YLTALGYPDDEELLAELFNKYW--PADVHLIGKDILRFHAVYWPAFLMAAGLPLP-KRVFAHGFLTLDGEKMSKSLGNVI 308 (511)
T ss_pred HHhHhccccccccchhHHHhcC--CCcceEecccccccchhHHHHHHHhCCCCCC-CEEEeeccEEECCeeecccCCcEE
Confidence 1 12233 6899999999999999999999998865555 555778999999999999999999
Q ss_pred CHHHHHHhcCchhHHHHHhhc-CCCCccCCCHHHHHHHHHH--HHHHHHHHHHHHHhcCccccC-----CCccCCChhHH
Q 012397 292 TIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASDA--VFYIYQTLQDCEVALSPFQEH-----GKTARINPAAE 363 (464)
Q Consensus 292 ~~~dll~~~~~dalR~~ll~~-~~~~~~~f~~~~~~~~~~~--l~~l~~~~~~~~~~l~~~~~~-----~~~~~~d~~l~ 363 (464)
++.|+++.||+|++|||+++. ++.++++|+++.+.+..+. ..+++|.+.|+.+.+.+...+ ....+.|++++
T Consensus 309 ~~~dll~~~g~DalR~~ll~~~~~~~d~~Fs~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~~~~~~~~~~~~d~~l~ 388 (511)
T PRK11893 309 DPFDLVDEYGVDAVRYFLLREIPFGQDGDFSREAFINRINADLANDLGNLAQRTLSMIAKNFDGKVPEPGALTEADEALL 388 (511)
T ss_pred cHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccchhhHHHH
Confidence 999999999999999999997 7899999999999776543 346777777666655432111 11245678999
Q ss_pred HHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhcccCchhh-hhhHHHHHHHHHHHHHHHHHhhc-cCCCc
Q 012397 364 DCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQ-QLSLIESLRKIENEVKEVLRILG-LLPPG 441 (464)
Q Consensus 364 ~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~~~~~~~~~-~~~r~~~~~~~~~~l~~~l~lLg-i~p~~ 441 (464)
..++++.+.+.++| ++++++.|+.. |+++++.+|+|++.++||...+. .+.+..++.++.++++.++.+|. |+|+
T Consensus 389 ~~l~~~~~~v~~~~-~~~~~~~a~~~-l~~l~~~~n~y~~~~~pw~~~~~~~~~~~~~l~~~~~~l~~l~~ll~P~~P~- 465 (511)
T PRK11893 389 EAAAALLERVRAAM-DNLAFDKALEA-ILALVRAANKYIDEQAPWSLAKTDPERLATVLYTLLEVLRGIAVLLQPVMPE- 465 (511)
T ss_pred HHHHHHHHHHHHHH-HhhhHHHHHHH-HHHHHHHHHHHHhhCCChhhhcCCHHHHHHHHHHHHHHHHHHHHHHhCccch-
Confidence 99999999999999 99999999999 99999999999999999975332 23345567889999999999999 9999
Q ss_pred cHHHHHHHhhhh
Q 012397 442 AYSEVKTAFLVL 453 (464)
Q Consensus 442 ~~e~i~~~l~~~ 453 (464)
+||+||+.|+..
T Consensus 466 ~ae~i~~~L~~~ 477 (511)
T PRK11893 466 LAAKILDQLGVE 477 (511)
T ss_pred HHHHHHHHhCCC
Confidence 999999999854
No 17
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.3e-62 Score=526.36 Aligned_cols=402 Identities=16% Similarity=0.206 Sum_probs=317.8
Q ss_pred eEEEeCCCCC--CcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q 012397 41 GMYVCGVTAY--DLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMA 118 (464)
Q Consensus 41 ~v~~~~P~p~--G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~ 118 (464)
.+++|+|.|| |++||||+|+++++|+++|++|++|++|.|++|+||||++|+.+|+++|++|++++++|.+.|.++++
T Consensus 5 ~~~it~~~py~ng~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~~g~~~~e~~d~~~~~fk~~l~ 84 (648)
T PRK12267 5 TFYITTPIYYPNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEKAGKTPQEYVDEISAGFKELWK 84 (648)
T ss_pred CEEEeeCCCCCCCCcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 3555555555 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCCCcch--hHHHHHHHHHHHHHCCceEeecCcEEEcCCC--------------CCCCCCCCCccccccccC
Q 012397 119 DLQCLPPTYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEK--------------SPNYGRLSGQRLENNRAG 182 (464)
Q Consensus 119 ~lgi~~~~~~~r~s~--~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~--------------~~~~g~l~~~~~~~~~~g 182 (464)
+|||++ |.+.|+++ |.+.++++|.+|.++|++|+++++++||+.| |+.||.- ++.....
T Consensus 85 ~lgI~~-D~f~rTt~~~h~~~v~~~~~~L~~kG~IY~~~~~~~yc~~~~~~l~~~~l~~~~~c~~cg~~----~e~~~~~ 159 (648)
T PRK12267 85 KLDISY-DKFIRTTDERHKKVVQKIFEKLYEQGDIYKGEYEGWYCVSCETFFTESQLVDGGKCPDCGRE----VELVKEE 159 (648)
T ss_pred HcCCCC-CCCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCccCChHHhccCCcCCCCCCc----CeEEecc
Confidence 999985 88888884 8889999999999999999999999998763 4444421 0000000
Q ss_pred CC-cccC--------CcccCcc---------ccc-cccc--ccCCCCccc-CCCCCCCCc--------hhhHHHHH-H--
Q 012397 183 ER-VAVD--------SRKRNPA---------DFA-LWKA--AKAGEPSWD-SPWGPGRPG--------WHIECSAM-S-- 229 (464)
Q Consensus 183 ~~-~~~~--------~~k~~~~---------d~~-~w~~--~~~g~~~~~-~~wg~~~P~--------w~~~~~~~-~-- 229 (464)
.. +.+. ..+.++. .+. -|.. ..+-.++|+ .+||+++|. |+++...+ +
T Consensus 160 ~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~l~~~l~D~~ISR~~~~WGipvP~~~~~v~yVWfDA~~~y~s~~ 239 (648)
T PRK12267 160 SYFFRMSKYQDRLLEYYEENPDFIQPESRKNEMINNFIKPGLEDLSISRTSFDWGIPVPFDPKHVVYVWIDALLNYITAL 239 (648)
T ss_pred eEEEEcHHHHHHHHHHHhhCCcccCCHHHHHHHHHHHhhCCCCCcccCCCCCCcceECCCCCCCEEEEcccchHHHHHHc
Confidence 00 0000 0011110 111 1322 234457887 489999984 87764322 1
Q ss_pred ----------HhhcCCCeeEEEecccCccccchHHHHHHhhccCCCCccEEEEeeeeeeCCcccccccCCccCHHHHHHh
Q 012397 230 ----------AHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITER 299 (464)
Q Consensus 230 ----------~~~~~~~~~i~~~G~D~~~~h~~~~~a~~~a~~~~~~~~~~~~~~~v~~~G~KmSks~gn~i~~~dll~~ 299 (464)
..+ +|.++|++|+|+++||.++|++++++++.++|.++.+ |||++++|+|||||+||+|+|.|+++.
T Consensus 240 ~~~~~~~~~~~~~--wp~~~~~~GkDii~fH~i~wpa~l~~~~~~~p~~v~~-hg~l~~eg~KMSKS~GN~i~p~d~l~~ 316 (648)
T PRK12267 240 GYGSDDDELFKKF--WPADVHLVGKDILRFHAIYWPIMLMALGLPLPKKVFA-HGWWLMKDGKMSKSKGNVVDPEELVDR 316 (648)
T ss_pred CCCCCCchHHHhh--cccceEEEeeeecchhHHHHHHHHHhCCCCCCcEEEe-cceEEECCceecccCCcccCHHHHHHH
Confidence 112 3789999999999999999999999988778888865 699999999999999999999999999
Q ss_pred cCchhHHHHHhhc-CCCCccCCCHHHHHHHHHH--HHHHHHHHHHHHHhcCccccCC-----CccCCChhHHHHHHHHHH
Q 012397 300 YHPLALRHFLISA-HYRSPLNYSVLQLDSASDA--VFYIYQTLQDCEVALSPFQEHG-----KTARINPAAEDCINKLRD 371 (464)
Q Consensus 300 ~~~dalR~~ll~~-~~~~~~~f~~~~~~~~~~~--l~~l~~~~~~~~~~l~~~~~~~-----~~~~~d~~l~~~l~~~~~ 371 (464)
||+|++|||+++. +.++|.+|+++.+.+..|. ..+|.|.+.|+.+.+.+...+. ...+.|++++++++++.+
T Consensus 317 ygaD~lR~~L~~~~~~~~D~~fs~~~~~~~~n~~l~~~lgNl~~R~~~~~~~~~~~~~p~~~~~~~~D~~ll~~l~~~~~ 396 (648)
T PRK12267 317 YGLDALRYYLLREVPFGSDGDFSPEALVERINSDLANDLGNLLNRTVAMINKYFDGEIPAPGNVTEFDEELIALAEETLK 396 (648)
T ss_pred cCCcHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcCCCCCCCchhhHHHHHHHHHHHH
Confidence 9999999999986 8899999999999876543 3345555555544443322221 124568999999999999
Q ss_pred HHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhcccCchhh--hhhHH-HHHHHHHHHHHHHHHhhc-cCCCccHHHHH
Q 012397 372 EFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQ--QLSLI-ESLRKIENEVKEVLRILG-LLPPGAYSEVK 447 (464)
Q Consensus 372 ~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~~~~~~~~~--~~~r~-~~~~~~~~~l~~~l~lLg-i~p~~~~e~i~ 447 (464)
++.++| +++++++|+.. ++++++.+|+|++..+||...+. +..++ ..+..+.++++.++.+|. |+|+ +||+||
T Consensus 397 ~v~~~~-e~~~~~~al~~-i~~~~~~~N~Yi~~~kpW~~~~~~~~~~~~~~~l~~~~~~l~~~~~lL~P~~P~-~ae~i~ 473 (648)
T PRK12267 397 NYEELM-EELQFSRALEE-VWKLISRANKYIDETAPWVLAKDEGKKERLATVMYHLAESLRKVAVLLSPFMPE-TSKKIF 473 (648)
T ss_pred HHHHHH-HhhhHHHHHHH-HHHHHHHHHHHHHhCCChhhhcCcccHHHHHHHHHHHHHHHHHHHHHHhCccch-HHHHHH
Confidence 999999 99999999999 99999999999999999975432 22333 456888999999999999 9999 999999
Q ss_pred HHhhhh
Q 012397 448 TAFLVL 453 (464)
Q Consensus 448 ~~l~~~ 453 (464)
++|+.+
T Consensus 474 ~~Lg~~ 479 (648)
T PRK12267 474 EQLGLE 479 (648)
T ss_pred HHcCCC
Confidence 999964
No 18
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=7.8e-62 Score=524.02 Aligned_cols=409 Identities=19% Similarity=0.176 Sum_probs=324.3
Q ss_pred cceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q 012397 39 KVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMA 118 (464)
Q Consensus 39 ~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~ 118 (464)
+..|.++.|+|||.+||||+|+++++|+++|++|++|++|.|++|+|+||++|+.+|+++|++|++++++|.+.|.++++
T Consensus 3 ~~~itt~~py~ng~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~ 82 (673)
T PRK00133 3 KILVTCALPYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAEHKRDFA 82 (673)
T ss_pred CEEEeCCCCCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 33444445577799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCCCcc--hhHHHHHHHHHHHHHCCceEeecCcEEEcCCC------------CCCCCCC--CCc--------
Q 012397 119 DLQCLPPTYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEK------------SPNYGRL--SGQ-------- 174 (464)
Q Consensus 119 ~lgi~~~~~~~r~s--~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~------------~~~~g~l--~~~-------- 174 (464)
.|||++ |.+.|++ +|++.++++|.+|+++|++|++++++|||+.| ||.||.. .+.
T Consensus 83 ~l~i~~-d~f~rtt~~~h~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~g~cp~C~~~d~~g~~ce~cg~~ 161 (673)
T PRK00133 83 GFGISF-DNYGSTHSEENRELAQEIYLKLKENGYIYEKTIEQLYDPEKGMFLPDRFVKGTCPKCGAEDQYGDNCEVCGAT 161 (673)
T ss_pred HhCCCC-CCCccCCcHHHHHHHHHHHHHHHHCCCEEEeeeEEEEeCCCCCCccchheecccCCCCCcccCCchhhhcccc
Confidence 999995 7788887 69999999999999999999999999999884 7888765 121
Q ss_pred ----ccccc---ccCCCcccCC------------------cccCcccc--------ccccc--ccCCCCcccCCC-CCCC
Q 012397 175 ----RLENN---RAGERVAVDS------------------RKRNPADF--------ALWKA--AKAGEPSWDSPW-GPGR 218 (464)
Q Consensus 175 ----~~~~~---~~g~~~~~~~------------------~k~~~~d~--------~~w~~--~~~g~~~~~~~w-g~~~ 218 (464)
++... .+|..+++.. ...++ .+ .-|.. ..+-.++|+.+| |+++
T Consensus 162 ~~~~~l~~~~~~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~l~d~~ISR~~~W~Gipv 240 (673)
T PRK00133 162 YSPTELINPKSAISGATPVLKESEHFFFKLPRFEEFLKEWITRSG-ELQPNVANKMKEWLEEGLQDWDISRDAPYFGFEI 240 (673)
T ss_pred CChHhhcCCccccCCCcceEEecceEEEEHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHhCCCcccceeeeCCccceEC
Confidence 11111 1233322110 00011 00 00111 123346788889 9999
Q ss_pred Cc--------hhhHHHHH---------------HHhhcC-C--CeeEEEecccCccccchHHHHHHhhccCCCCccEEEE
Q 012397 219 PG--------WHIECSAM---------------SAHYLS-S--KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMH 272 (464)
Q Consensus 219 P~--------w~~~~~~~---------------~~~~~~-~--~~~i~~~G~D~~~~h~~~~~a~~~a~~~~~~~~~~~~ 272 (464)
|+ |+++...+ ...+|. . +..+|++|+|+++||.++||+++++.+.++|.++++
T Consensus 241 P~~~~~~iyVW~dal~~Yl~~~~~~~~~~~~~~~~~~w~~~~~~~~v~~iGkDi~~fH~i~wpa~l~a~g~~lP~~v~~- 319 (673)
T PRK00133 241 PGAPGKVFYVWLDAPIGYISSTKNLCDKRGGLDWDEYWKKDSDTELYHFIGKDIIYFHTLFWPAMLEGAGYRLPTNVFA- 319 (673)
T ss_pred CCCCCeEEEEcccchhhhhHHHhhhcccccchhHHHhcCCCCCceEEEEEeecchhHHHHHHHHHHHhCCCCCCCEEee-
Confidence 84 76653211 112341 1 234999999999999999999999988887877755
Q ss_pred eeeeeeCCcccccccCCccCHHHHHHhcCchhHHHHHhhc-CCC-CccCCCHHHHHHHHHH--HHHHHHHHHHHHHhcCc
Q 012397 273 NGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYR-SPLNYSVLQLDSASDA--VFYIYQTLQDCEVALSP 348 (464)
Q Consensus 273 ~~~v~~~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~-~~~-~~~~f~~~~~~~~~~~--l~~l~~~~~~~~~~l~~ 348 (464)
|||++++|+|||||+||+|+|.|+++.||+|++|||+++. +.+ +|.+|+++.+....+. +.+++|.+.|+.+++.+
T Consensus 320 hg~v~~~G~KMSKS~GNvV~p~dlie~ygaDalR~~ll~~~~~~~~D~~Fs~~~~~~~~n~~l~~~l~Nl~~R~~~~~~k 399 (673)
T PRK00133 320 HGFLTVEGAKMSKSRGTFIWARTYLDHLDPDYLRYYLAAKLPETIDDLDFNWEDFQQRVNSELVGKVVNFASRTAGFINK 399 (673)
T ss_pred eccEEecCCcccccCCcccCHHHHHHHcCchHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999987 777 8999999998765442 55667766676666544
Q ss_pred cccCCC-ccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhcccCchhhh-hhHHHHHHHHHH
Q 012397 349 FQEHGK-TARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQ-LSLIESLRKIEN 426 (464)
Q Consensus 349 ~~~~~~-~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~~~~~~~~~~-~~r~~~~~~~~~ 426 (464)
...+.. ..+.|++++.+++++.+++.++| ++++++.|+.. ++++++.+|+|++..+||...+.+ +.+..++..+.+
T Consensus 400 ~~~~~~~~~~~d~~ll~~l~~~~~~v~~a~-e~~~~~~a~~~-l~~l~~~~N~yi~~~kpw~~~~~~~~~~~~~l~~~~~ 477 (673)
T PRK00133 400 RFDGKLPDALADPELLEEFEAAAEKIAEAY-EAREFRKALRE-IMALADFANKYVDDNEPWKLAKQDGERLQAVCSVGLN 477 (673)
T ss_pred hcCCCCCCCcccHHHHHHHHHHHHHHHHHH-HhcCHHHHHHH-HHHHHHHHHHHHHhcCChhhhcCCHHHHHHHHHHHHH
Confidence 332221 24678999999999999999999 99999999999 999999999999999999754332 334455788889
Q ss_pred HHHHHHHhhc-cCCCccHHHHHHHhhhh
Q 012397 427 EVKEVLRILG-LLPPGAYSEVKTAFLVL 453 (464)
Q Consensus 427 ~l~~~l~lLg-i~p~~~~e~i~~~l~~~ 453 (464)
+++.++.+|. |+|+ +||+||++|+..
T Consensus 478 ~l~~l~~lL~Pf~P~-~ae~i~~~Lg~~ 504 (673)
T PRK00133 478 LFRALAIYLKPVLPE-LAERAEAFLNLE 504 (673)
T ss_pred HHHHHHHHhhChhch-HHHHHHHHhCCC
Confidence 9999999999 9999 999999999964
No 19
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=100.00 E-value=5.2e-61 Score=507.55 Aligned_cols=405 Identities=20% Similarity=0.188 Sum_probs=325.6
Q ss_pred eEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q 012397 41 GMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADL 120 (464)
Q Consensus 41 ~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l 120 (464)
.|..++|+|||.+||||+|+++.+|+++|++|++|++|.+++|+||||++|+.+|+++|++++++++.+.+.|.+++++|
T Consensus 2 ~it~~~P~~ng~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~L 81 (530)
T TIGR00398 2 LITTALPYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQEGLTPKELVDKYHEEFKDDWKWL 81 (530)
T ss_pred EEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 45667888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcch--hHHHHHHHHHHHHHCCceEeecCcEEEcCCC------------CCCCCCCC--C-----------
Q 012397 121 QCLPPTYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEK------------SPNYGRLS--G----------- 173 (464)
Q Consensus 121 gi~~~~~~~r~s~--~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~------------~~~~g~l~--~----------- 173 (464)
||++ |.+.++++ |.+.+++++.+|.++|++|+++++++||+.+ ||.||... +
T Consensus 82 gI~~-D~~~~t~~~~~~~~v~~~~~~L~~kG~iY~~~~~v~~~~~~~~~l~~~~v~g~cp~c~~~~~~g~~ce~cg~~~~ 160 (530)
T TIGR00398 82 NISF-DRFIRTTDEEHKEIVQKIFQKLKENGYIYEKEIKQLYCPECEMFLPDRYVEGTCPKCGSEDARGDHCEVCGRHLE 160 (530)
T ss_pred CCCC-CCCccCCCHHHHHHHHHHHHHHHHCCCEEEeeeEEEecCCCCcCCchhhhcCCCCCCCCcccccchhhhccccCC
Confidence 9985 77777764 8899999999999999999999999999874 77776420 1
Q ss_pred -cccccc---ccCCCcccCC------------------cccCccccccc-----------cc--ccCCCCcccCC-CCCC
Q 012397 174 -QRLENN---RAGERVAVDS------------------RKRNPADFALW-----------KA--AKAGEPSWDSP-WGPG 217 (464)
Q Consensus 174 -~~~~~~---~~g~~~~~~~------------------~k~~~~d~~~w-----------~~--~~~g~~~~~~~-wg~~ 217 (464)
.++... .+|+.++... .+.++ +...| .. ..+-.++|+.. ||++
T Consensus 161 ~~~l~~p~~~~~~~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~d~~iSR~~~~WGip 239 (530)
T TIGR00398 161 PTELINPRCKICGAKPELRDSEHYFFRLSAFEKELEEWIRKNP-ESGSPASNVKNKAQNWLKGGLKDLAITRDLVYWGIP 239 (530)
T ss_pred HHHhcCCccccCCCcceEEecceEEEEhHHHHHHHHHHHHhCC-ccCCCcHHHHHHHHHHHhCCCCCccccCcCCCCCee
Confidence 111110 1233322110 01111 11111 11 12334678888 9999
Q ss_pred CCc--------hhhHHHH-HH------------HhhcCCCee-----EEEecccCccccchHHHHHHhhccCCCCccEEE
Q 012397 218 RPG--------WHIECSA-MS------------AHYLSSKFD-----IHGGGIDLIFPHHENEIAQSCAACQDSNVSYWM 271 (464)
Q Consensus 218 ~P~--------w~~~~~~-~~------------~~~~~~~~~-----i~~~G~D~~~~h~~~~~a~~~a~~~~~~~~~~~ 271 (464)
+|. |+.+... ++ .++| +.+ +|++|+|+++||..+|++++++++.++|.++ +
T Consensus 240 vP~~~~~~~yvW~da~~~y~~~~~~~~~~~~~~~~~w--~~~~~~~~v~~~G~Di~~~h~~~~~a~l~~~~~~~~~~~-~ 316 (530)
T TIGR00398 240 VPNDPNKVVYVWFDALIGYISSLGILSGDTEDWKKWW--NNDEDAELIHFIGKDIVRFHTIYWPAMLMGLGLPLPTQV-F 316 (530)
T ss_pred CCCCCCcEEEEeecchHHhHhhhccccCChhhHHHhC--CCCCCceEEEEEecccchhHHHHHHHHHHhCCCCCCCEE-E
Confidence 996 4443211 11 1233 445 9999999999999999999999887777777 5
Q ss_pred EeeeeeeCCcccccccCCccCHHHHHHhcCchhHHHHHhhc-CCCCccCCCHHHHHHHHH--HHHHHHHHHHHHHHhcCc
Q 012397 272 HNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASD--AVFYIYQTLQDCEVALSP 348 (464)
Q Consensus 272 ~~~~v~~~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~-~~~~~~~f~~~~~~~~~~--~l~~l~~~~~~~~~~l~~ 348 (464)
+|||++++|+|||||+||+|+|.|+++.||+|++|||+++. +..+|++|+++.+.+..| .+.+++|++.|+.+++.+
T Consensus 317 ~~g~v~~~g~KmSKS~Gn~i~~~d~i~~~g~D~lR~~l~~~~~~~~d~~f~~~~l~~~~n~~l~~~l~n~~~r~~~~~~~ 396 (530)
T TIGR00398 317 SHGYLTVEGGKMSKSLGNVVDPSDLLARFGADILRYYLLKERPLGKDGDFSWEDFVERVNADLANKLGNLLNRTLGFIKK 396 (530)
T ss_pred eeccEEECCceecccCCceecHHHHHHHcCchHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999986 789999999999987753 467888888877666544
Q ss_pred cccC-----CCccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhcccCchhhhhhHHHHHHH
Q 012397 349 FQEH-----GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRK 423 (464)
Q Consensus 349 ~~~~-----~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~~~~~~~~~~~~r~~~~~~ 423 (464)
...+ ....+.|++++.+++++.+.+.++| ++++++.|+.. +++|++.+|+|++.++||...+.+..+..++.+
T Consensus 397 ~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~a~-e~~~~~~a~~~-l~~l~~~~n~Yi~~~kpw~~~~~~~~~~~~~~~ 474 (530)
T TIGR00398 397 YFNGVLPSEDITDEEDKKLLKLINEALEQIDEAI-ESFEFRKALRE-IMKLADRGNKYIDENKPWELFKQSPRLKELLAV 474 (530)
T ss_pred hcCCcCCCCcccchhhHHHHHHHHHHHHHHHHHH-HccCHHHHHHH-HHHHHHHHHHHHhcCCChhhcCChHHHHHHHHH
Confidence 3211 1124578999999999999999999 99999999999 999999999999999999864433345567789
Q ss_pred HHHHHHHHHHhhc-cCCCccHHHHHHHhhhh
Q 012397 424 IENEVKEVLRILG-LLPPGAYSEVKTAFLVL 453 (464)
Q Consensus 424 ~~~~l~~~l~lLg-i~p~~~~e~i~~~l~~~ 453 (464)
+.++++.++.+|. |+|+ +||+||+.|+..
T Consensus 475 l~~~l~~l~~ll~P~~P~-~ae~i~~~L~~~ 504 (530)
T TIGR00398 475 CSMLIRVLSILLYPIMPK-LSEKILKFLNFE 504 (530)
T ss_pred HHHHHHHHHHHHhCcccH-HHHHHHHHhCCC
Confidence 9999999999999 9999 999999999864
No 20
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.1e-59 Score=496.74 Aligned_cols=409 Identities=17% Similarity=0.136 Sum_probs=316.6
Q ss_pred cceEEEeCCCCCCcCCcccchhH-HHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 012397 39 KVGMYVCGVTAYDLSHLGHARAA-VSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDM 117 (464)
Q Consensus 39 ~~~v~~~~P~p~G~lHiGHar~~-l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l 117 (464)
+..|..++|+|||.|||||++++ +.+|+++|++|++|++|.+++|+||||++|+.+|+++|+++++++++|...|.+++
T Consensus 4 ~~~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~ 83 (556)
T PRK12268 4 RILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKKEGVTPQELADKYHEEHKEDF 83 (556)
T ss_pred cEEEecCCCCCCCCccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 34455556677799999999988 99999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCCCCcc--hhHHHHHHHHHHHHHCCceEeecCcEEEcCCC------------CCCCCCC--CC--------
Q 012397 118 ADLQCLPPTYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEK------------SPNYGRL--SG-------- 173 (464)
Q Consensus 118 ~~lgi~~~~~~~r~s--~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~------------~~~~g~l--~~-------- 173 (464)
++|||++ |.+++++ +|.+.++++|.+|+++|++|++++.++||+.| ||.|+.. .|
T Consensus 84 ~~l~i~~-d~~~~t~~~~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~l~~~~v~g~cp~c~~~~~~G~~ce~cg~ 162 (556)
T PRK12268 84 KKLGISY-DLFTRTTSPNHHEVVQEFFLKLYENGYIYKKTIEQAYCPSDGRFLPDRYVEGTCPYCGYEGARGDQCDNCGA 162 (556)
T ss_pred HHcCCcC-CCCcCCCCHHHHHHHHHHHHHHHHCCCeEEeeeEEEecCCCCcCcCccceeccCCCCCCcccCCchhhhccc
Confidence 9999985 7888888 89999999999999999999999999999874 6776621 11
Q ss_pred ----cccccc---ccCCCcccCC----------cc-----------cCcc----ccccccc--ccCCCCcccCCCCCCCC
Q 012397 174 ----QRLENN---RAGERVAVDS----------RK-----------RNPA----DFALWKA--AKAGEPSWDSPWGPGRP 219 (464)
Q Consensus 174 ----~~~~~~---~~g~~~~~~~----------~k-----------~~~~----d~~~w~~--~~~g~~~~~~~wg~~~P 219 (464)
.++... .+|+.++... .+ .-|. .+.-|.. ..+-.++|+..||+++|
T Consensus 163 ~~~~~~l~~p~~~~~~~~~e~~~~~qwF~~l~~~~~~l~~~~~~~~~~p~~~~~~~~~~l~~~l~Dw~ISR~~~WGipiP 242 (556)
T PRK12268 163 LLDPTDLINPRSKISGSTPEFRETEHFFLDLPAFAERLRAWIESSGDWPPNVLNFTLNWLKEGLKPRAITRDLDWGIPVP 242 (556)
T ss_pred cCChHHhcCCccccCCCcCeEEecceEEEEhHHHHHHHHHHHhhccCCCHHHHHHHHHHHhCCCCCcCceeeCCCCeeCC
Confidence 111111 1222221110 00 0000 0001111 12345677889999999
Q ss_pred --c--------hhhHHHHH-------H---------Hhhc--CCCeeEEEecccCccccchHHHHHHhhcc--CCCCccE
Q 012397 220 --G--------WHIECSAM-------S---------AHYL--SSKFDIHGGGIDLIFPHHENEIAQSCAAC--QDSNVSY 269 (464)
Q Consensus 220 --~--------w~~~~~~~-------~---------~~~~--~~~~~i~~~G~D~~~~h~~~~~a~~~a~~--~~~~~~~ 269 (464)
. |+.+.... . ..+| ..+.++++.|+|+++||..++++++++.+ .+.|..+
T Consensus 243 ~~~~~~~~iyvW~da~~~y~~~~~~~~~~~g~~~~~~~~w~ds~~~~~~~~G~D~~~Fh~~~~p~~l~~~~~~~~~P~~v 322 (556)
T PRK12268 243 WPGFEGKVFYVWFDAVIGYISASKEWAERTGDPEAWKEFWLDPETKSYYFIGKDNIPFHSIIWPAMLLGSGEPLKLPDEI 322 (556)
T ss_pred CCCCCCcEEEEeehHhhHHHHHHHHHHHhcCCchHHHHHhCCCCCeEEEEEeeccCcchHHHHHHHHHhcCCCCCCCCEe
Confidence 2 54432111 1 1234 22567999999999999999999998887 4555566
Q ss_pred EEEeeeeeeCCcccccccCCccCHHHHHHhcCchhHHHHHhhc-CCCCccCCCHHHHHHHHH--HHHHHHHHHHHHHHhc
Q 012397 270 WMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASD--AVFYIYQTLQDCEVAL 346 (464)
Q Consensus 270 ~~~~~~v~~~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~-~~~~~~~f~~~~~~~~~~--~l~~l~~~~~~~~~~l 346 (464)
++|||++++|+|||||+||+|+|.|++++||+|++|||+++. +..+|++|+++.+....+ .+..++|.+.|+.+++
T Consensus 323 -~~~G~v~~~G~KMSKS~GN~I~p~dli~~yGaDalR~~ll~~~~~~~d~~f~~~~~~~~~~~~~~~~l~n~~~r~~~~~ 401 (556)
T PRK12268 323 -VSSEYLTLEGGKFSKSRGWGIWVDDALERYPPDYLRYYLAANAPENSDTDFTWEEFVRRVNSELADKYGNLVNRVLSFI 401 (556)
T ss_pred -eccCCEEECCeeeccCCCcccCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHhHHhhhhHHHHHHHHHHHH
Confidence 557999999999999999999999999999999999999987 778999999999875433 2445556555555544
Q ss_pred CccccC----CCccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhcccCchhh-hhhHHHHH
Q 012397 347 SPFQEH----GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQ-QLSLIESL 421 (464)
Q Consensus 347 ~~~~~~----~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~~~~~~~~~-~~~r~~~~ 421 (464)
.+.... ...++.|++++.+++++++.+.++| ++++++.|+.. +++|++.+|+|++..+||...+. .+....++
T Consensus 402 ~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~-~~~~~~~a~~~-l~~~~~~~n~yi~~~kpw~~~~~~~~~~~~~l 479 (556)
T PRK12268 402 EKYFGGIVPPGELGDEDRELIAEAEALFKEVGELL-EAGEFKKALEE-IMELAREANKYLDEKAPWKLAKTDRERAATVL 479 (556)
T ss_pred HHhcCCcCCCCcCCcccHHHHHHHHHHHHHHHHHH-HhhhHHHHHHH-HHHHHHHHHHHHHcCCChhhhcCCHHHHHHHH
Confidence 332111 1235678999999999999999999 99999999999 99999999999999999974332 22234456
Q ss_pred HHHHHHHHHHHHhhc-cCCCccHHHHHHHhhh
Q 012397 422 RKIENEVKEVLRILG-LLPPGAYSEVKTAFLV 452 (464)
Q Consensus 422 ~~~~~~l~~~l~lLg-i~p~~~~e~i~~~l~~ 452 (464)
..+.++++.++.+|. |+|+ +||+||++|+.
T Consensus 480 ~~~~~~l~~~~~lL~P~~P~-~aeei~~~Lg~ 510 (556)
T PRK12268 480 YTALNLVRLLAVLLYPFLPF-SAQKIWEMLGG 510 (556)
T ss_pred HHHHHHHHHHHHHhhCccch-HHHHHHHHhCC
Confidence 778889999999999 9999 99999999986
No 21
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.1e-59 Score=448.29 Aligned_cols=411 Identities=19% Similarity=0.181 Sum_probs=324.4
Q ss_pred eEEEeCCCCC--CcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q 012397 41 GMYVCGVTAY--DLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMA 118 (464)
Q Consensus 41 ~v~~~~P~p~--G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~ 118 (464)
+.+.|+|..| .++||||+++.+++|+++|++|++|..|.|.+|+|+||.||+..|...|.+|.++||....+|.+.++
T Consensus 40 ~~~lTTPifYvNAaPHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaaatnG~~P~e~cDr~s~~f~qL~k 119 (578)
T KOG0436|consen 40 TFVLTTPIFYVNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAATNGRNPPELCDRISQSFRQLWK 119 (578)
T ss_pred eeEEecceeecCCCcchhHHHHHHHHHHHHHHHhhcCCceEeecCCCccchhhhhhHhhcCCChHHHHhhhhHHHHHHHH
Confidence 6777778766 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCCCcc--hhHHHHHHHHHHHHHCCceEeecCcEEEcCCCCCCCCC--CCC-----ccccccccCCCcccC-
Q 012397 119 DLQCLPPTYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGR--LSG-----QRLENNRAGERVAVD- 188 (464)
Q Consensus 119 ~lgi~~~~~~~r~s--~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~~g~--l~~-----~~~~~~~~g~~~~~~- 188 (464)
.+||.+ +.|.|++ .|...++++|..+.++|+||..++++|||+++...+-+ +.+ .....++.|..+.+.
T Consensus 120 ~~gi~y-t~FIRTTdpkH~a~Vqefw~~~~knG~iy~g~~eGwYcvsdEtf~pEskv~k~p~~~gk~vsmEsg~~vv~~k 198 (578)
T KOG0436|consen 120 DAGIAY-TKFIRTTDPKHEAIVQEFWARVFKNGDIYRGDYEGWYCVSDETFYPESKVLKNPCPPGKVVSMESGNPVVWRK 198 (578)
T ss_pred HhCcch-hheeecCCchHHHHHHHHHHHHHhCCceeeecccceEeccccccCCHHHHhcCCCCCCceeeeccCCceeEec
Confidence 999985 8999998 68899999999999999999999999999986332221 100 011122233332211
Q ss_pred -----------------CcccCcccccccc--------cccCC----CCccc---CCCCCCCCc--------hhhHHHHH
Q 012397 189 -----------------SRKRNPADFALWK--------AAKAG----EPSWD---SPWGPGRPG--------WHIECSAM 228 (464)
Q Consensus 189 -----------------~~k~~~~d~~~w~--------~~~~g----~~~~~---~~wg~~~P~--------w~~~~~~~ 228 (464)
....|| +|.-.. ..+.| +++|+ ..||++.|+ |++++-.+
T Consensus 199 E~NY~FrLSkfqk~l~d~lrkNP-~fvqPs~~~~qVl~~lktglpDlSISRpsarl~WGIPvP~ddsQtIYVWfDAL~nY 277 (578)
T KOG0436|consen 199 EDNYFFRLSKFQKPLEDHLRKNP-RFVQPSYFHNQVLSWLKTGLPDLSISRPSARLDWGIPVPGDDSQTIYVWFDALLNY 277 (578)
T ss_pred ccceeeeHHhhhhHHHHHHhcCC-CccCchHHHHHHHHHHHcCCCcccccChhhhcccCCCCCCCCcceEEEeHHHHhhH
Confidence 122344 333210 01223 34553 379999995 98875322
Q ss_pred HH----h----------hcCCCeeEEEecccCccccchHHHHHHhhccCCCCccEEEEeeeeeeCCcccccccCCccCHH
Q 012397 229 SA----H----------YLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIR 294 (464)
Q Consensus 229 ~~----~----------~~~~~~~i~~~G~D~~~~h~~~~~a~~~a~~~~~~~~~~~~~~~v~~~G~KmSks~gn~i~~~ 294 (464)
.. . -+++|..+|++|||++.||.++|||+++++|.++|..+++ |||++.+|.|||||+||+|+|.
T Consensus 278 iSvig~~~~~~N~k~~ls~~wPat~HvIGKDIlrFHavYWPafLmaAGlplP~~I~v-Hghwt~ngmKMsKSLGNvvdP~ 356 (578)
T KOG0436|consen 278 ISVIGYPNKQQNLKTALSFGWPATLHVIGKDILRFHAVYWPAFLMAAGLPLPKMIFV-HGHWTKNGMKMSKSLGNVVDPF 356 (578)
T ss_pred HHhhcCCchhccccceeecCCCceeeehhhhhhhhhhhhhHHHHHhcCCCCccEEEE-eeeeeecceecchhhccccCHH
Confidence 11 0 1568999999999999999999999999999999999877 5999999999999999999999
Q ss_pred HHHHhcCchhHHHHHhhc-CCCCccCCCHHHHHHHHH-----HHHHHHHHHHHHHHhcCccccCC-----CccCCChhHH
Q 012397 295 QITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASD-----AVFYIYQTLQDCEVALSPFQEHG-----KTARINPAAE 363 (464)
Q Consensus 295 dll~~~~~dalR~~ll~~-~~~~~~~f~~~~~~~~~~-----~l~~l~~~~~~~~~~l~~~~~~~-----~~~~~d~~l~ 363 (464)
+++++||+|++|||+|+. .++.|-+|+.+.+....| .+|+|.|++..-.-...+..... ........|.
T Consensus 357 ~l~~kygvD~vRyflLr~~~l~~Dgdy~eekl~k~~n~~La~~lG~LlnRc~gkkln~sn~e~~l~~~s~~v~ae~~~lv 436 (578)
T KOG0436|consen 357 ELVQKYGVDAVRYFLLREGELGNDGDYSEEKLIKIVNAHLANTLGNLLNRCLGKKLNISNCESTLVVDSPTVAAEGEPLV 436 (578)
T ss_pred HHHHHhCccceeeEeeeccccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcccChhccccccccCCcchhhccchHH
Confidence 999999999999999997 889999999999986654 47777665421101112211111 1133456789
Q ss_pred HHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhcccCchhhhhh----HHHHHHHHHHHHHHHHHhhc-cC
Q 012397 364 DCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLS----LIESLRKIENEVKEVLRILG-LL 438 (464)
Q Consensus 364 ~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~~~~~~~~~~~~----r~~~~~~~~~~l~~~l~lLg-i~ 438 (464)
..+.++++.+.+.+ +++.+++||.. +.++.+..|.|+++.+||....+.+. ....+..++++++.+..+|+ |+
T Consensus 437 ~~v~kl~ev~a~~~-d~f~~~~ale~-V~si~n~~ntlvq~~aPWkl~~dsq~~~~~la~~~~~~le~lrv~~illqpv~ 514 (578)
T KOG0436|consen 437 DTVEKLPEVAATNY-DNFSLYSALEA-VLSIGNAGNTLVQQRAPWKLFKDSQVSAEELAKVLHIILEVLRVIGILLQPVA 514 (578)
T ss_pred HHHHHhHHHHHhhc-ccccHHHHHHH-HHHHHHhhhhhhhhcCCceeccccCccHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 99999999999999 99999999999 99999999999999999987543322 22334666777888888888 99
Q ss_pred CCccHHHHHHHhhhhHhHh
Q 012397 439 PPGAYSEVKTAFLVLLHVF 457 (464)
Q Consensus 439 p~~~~e~i~~~l~~~~~~~ 457 (464)
|- .+.+++++|++....+
T Consensus 515 Ps-ls~~llsqlgvsk~qr 532 (578)
T KOG0436|consen 515 PS-LSLRLLSQLGVSKDQR 532 (578)
T ss_pred ch-hHHHHHHHcCCChhhc
Confidence 97 9999999999887665
No 22
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.5e-54 Score=455.65 Aligned_cols=428 Identities=15% Similarity=0.156 Sum_probs=324.8
Q ss_pred eecccCCC---CcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHH----HcCCC-
Q 012397 30 ELFTPIVR---GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRAN----DLGEN- 101 (464)
Q Consensus 30 ~~~~~~~~---~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~----~~g~~- 101 (464)
..|.|..+ .+..|.++||||+|.||||||.+..+.|+++|+.||+|++|+|+.|+|++|..++...+ ++|++
T Consensus 22 ~~f~~~~~~~~~~f~I~~PPPNVTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~DhAGIaTq~~VEk~l~~~g~~r 101 (877)
T COG0525 22 GYFKPDPNEDKPPFSIDTPPPNVTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTDHAGIATQVVVEKQLAAEGITR 101 (877)
T ss_pred CCccCCCCCCCCCcEEeCCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeecCCCCCCCCchHHHHHHHHHHHcCCCc
Confidence 35555432 44889999999999999999999999999999999999999999999999976654443 34654
Q ss_pred -----------hHHHHHHHHHHHHHHHHhcCCCCC---CCCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCCC--
Q 012397 102 -----------PLSLSNRYCQEYLVDMADLQCLPP---TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS-- 165 (464)
Q Consensus 102 -----------~~~~~~~~~~~~~~~l~~lgi~~~---~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~-- 165 (464)
+++|.+++.+.|.+.+++||++.+ +.|+......+.+++.|.+|+++|+||++++.+.||+.|-
T Consensus 102 ~d~gRe~Fl~~~weWk~e~~~~I~~Q~~rLG~S~DWsrE~fTmD~~~s~av~~~Fv~Ly~~GlIYr~~~lVNWcP~~~TA 181 (877)
T COG0525 102 HDLGREEFLKKCWEWKEESGGTIREQLRRLGVSVDWSRERFTMDPGLSRAVQEAFVRLYEKGLIYRGERLVNWCPKCRTA 181 (877)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHHHHHHHCCceeecCCcccCCCccccc
Confidence 589999999999999999999953 2244444788899999999999999999999999998740
Q ss_pred ---------------------------------------------------CCCCCCCCcccc----------------c
Q 012397 166 ---------------------------------------------------PNYGRLSGQRLE----------------N 178 (464)
Q Consensus 166 ---------------------------------------------------~~~g~l~~~~~~----------------~ 178 (464)
++|..+.|..+. +
T Consensus 182 iSd~EVe~~e~~g~L~~i~y~l~~~~~~i~VATTRPEtmlgdtAVaVhP~DeRYk~LvGk~v~lPl~~r~IpIiaD~~VD 261 (877)
T COG0525 182 ISDIEVEYKEVEGKLYYIKYPLADGDGYLVVATTRPETLLGDTAVAVHPDDERYKHLVGKEVILPLVGREIPIIADEYVD 261 (877)
T ss_pred hhhhhhccceeeeeEEEEEEecCCCCceEEEEecCccccccceEEEECCCChhhHhhcCCEEecCCCCCeeeeecCcccC
Confidence 000000000000 0
Q ss_pred cccCCCcccCCcccCcccccc-----------------------------------------------------------
Q 012397 179 NRAGERVAVDSRKRNPADFAL----------------------------------------------------------- 199 (464)
Q Consensus 179 ~~~g~~~~~~~~k~~~~d~~~----------------------------------------------------------- 199 (464)
..-|+-+...+.-+++.|+.+
T Consensus 262 ~eFGTG~VkItpahD~nD~e~~krh~Lp~i~i~d~dG~in~~~~~~~~Gl~r~eAR~kIv~~L~~~GlLvk~e~~~h~V~ 341 (877)
T COG0525 262 PEFGTGAVKITPAHDFNDYEVGKRHNLPLINIIDEDGRINEEAAGEFAGLDRFEARKKIVEDLEEQGLLVKIEPHKHSVG 341 (877)
T ss_pred CcCCCceEEecCCCCchhhhhhhcCCCCceEEECCCCeeccCCccccCCCcHHHHHHHHHHHHHhCCCeEeeeeccccCc
Confidence 000000000000000000000
Q ss_pred ----------------c----------------------------------c-cccCCCCcccCCCCCCCCchhh-HHHH
Q 012397 200 ----------------W----------------------------------K-AAKAGEPSWDSPWGPGRPGWHI-ECSA 227 (464)
Q Consensus 200 ----------------w----------------------------------~-~~~~g~~~~~~~wg~~~P~w~~-~~~~ 227 (464)
| . ..++..++|+..||.++|.|+. +|..
T Consensus 342 ~~~R~g~~IEp~ls~QWfVk~~~la~~~l~~~~~g~i~f~P~~~~~~~~~W~~~i~DWcISRQlwwGh~IPvWy~~~~g~ 421 (877)
T COG0525 342 HCERCGTPIEPLLSKQWFVKVLELAKKALEAVKDGKIKFVPERMEKRYEDWMENIRDWCISRQLWWGHRIPVWYCKECGN 421 (877)
T ss_pred cccCCCceeeeeecceeeEEhHhhHHHHHHHHhcCCceEecHHHHHHHHHHHhhCcCceeeeeeecCcccceEEecCCCc
Confidence 0 0 0012334667789999999986 3310
Q ss_pred ---------------------H-----------HHh-----hcC-----------CCeeEEEecccCccccchHHHHHHh
Q 012397 228 ---------------------M-----------SAH-----YLS-----------SKFDIHGGGIDLIFPHHENEIAQSC 259 (464)
Q Consensus 228 ---------------------~-----------~~~-----~~~-----------~~~~i~~~G~D~~~~h~~~~~a~~~ 259 (464)
. +.. .+| .|.++.+.|.|++||+...-+.+..
T Consensus 422 v~v~~~~~~~~~~~~~~~~~~~~qd~DVLDTWFSS~LwPfstlgWp~~t~~l~~fyPt~llvtG~DIIffWvarmi~~~~ 501 (877)
T COG0525 422 VVVAEEEPEDPAAAEKCPKEELEQDEDVLDTWFSSSLWPFSTLGWPEETPDLKKFYPTDLLVTGHDIIFFWVARMIMRGL 501 (877)
T ss_pred EEeCCccccchhhhccCchhcccCCcchhhhhhhcccccccccCCCCcchHHHhcCCCccccccchhhHHHHHHHHHHHH
Confidence 0 000 012 2778999999999998876666666
Q ss_pred hccC-CCCccEEEEeeeeee-CCcccccccCCccCHHHHHHhcCchhHHHHHhhc-CCCCccCCCHHHHHHHHHHHHHHH
Q 012397 260 AACQ-DSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASDAVFYIY 336 (464)
Q Consensus 260 a~~~-~~~~~~~~~~~~v~~-~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~-~~~~~~~f~~~~~~~~~~~l~~l~ 336 (464)
.+.+ .||..+++ ||+|.. +|+|||||+||+|+|.|++++||+|||||++++. ..++|++|+++.+.+.+|...+||
T Consensus 502 ~~~~~~PFk~V~i-hGLVrDe~G~KMSKS~GNvIDP~d~I~~yGaDAlRf~la~~~~~G~Di~~~~~~~~~~rnF~nKlW 580 (877)
T COG0525 502 HLTGEVPFKDVYI-HGLVRDEQGRKMSKSKGNVIDPLDVIDKYGADALRFTLASLASPGRDINFDEKRVEGYRNFLNKLW 580 (877)
T ss_pred HhcCCCCccEEEE-eeeEEcCCCCCCcccCCCcCCHHHHHHHhChHHHHHHHHhccCCCcccCcCHHHHHHHHHHHHHHH
Confidence 6655 58888877 599998 9999999999999999999999999999999997 899999999999999999999999
Q ss_pred HHHHHHHHhcCccccCC----CccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHH--HHHHHhhhhcccCc
Q 012397 337 QTLQDCEVALSPFQEHG----KTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALK--FINSSLNMLKKKQP 410 (464)
Q Consensus 337 ~~~~~~~~~l~~~~~~~----~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~--~~n~~~~~~~~~~~ 410 (464)
|+.+++...+.+..... ..++.|+|++.+++++++.++++| ++|++..|... |++|+. .++.|++..|+-..
T Consensus 581 Na~Rfv~~~~~~~~~~~~~~~~~~~~drWIls~l~~~v~~v~~~l-d~y~f~~a~~~-ly~F~W~~fcD~YlEl~K~~l~ 658 (877)
T COG0525 581 NATRFVLMNLDDLGPDDLDLLALSLADRWILSRLNETVKEVTEAL-DNYRFDEAARA-LYEFIWNDFCDWYLELAKPRLY 658 (877)
T ss_pred hHHHHHHhcccccCcccccccccchHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHH-HHHHhHHHHHHHHHHHhhhhhc
Confidence 99999877664443211 125788999999999999999999 99999999999 999986 47999999887321
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhc-cCCCccHHHHHHHhhhhHhHhcCCCC
Q 012397 411 KQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVKTAFLVLLHVFFDDSP 462 (464)
Q Consensus 411 ~~~~~~r~~~~~~~~~~l~~~l~lLg-i~p~~~~e~i~~~l~~~~~~~~~~~~ 462 (464)
.. .+.+..+..++..+|..+++||+ |+|+ +||+|||+|....++++..+|
T Consensus 659 ~~-~~~~~~a~~tL~~vl~~~lrLLhPfmPf-iTEei~q~l~~~~si~~~~~P 709 (877)
T COG0525 659 GG-EEEKRAARATLYYVLDTLLRLLHPFMPF-ITEEIWQKLPGTESIHLASWP 709 (877)
T ss_pred Cc-HHHHHHHHHHHHHHHHHHHHHhCCCCcc-chHHHHHhcCCCCeEEeccCC
Confidence 22 44556788999999999999999 9998 999999999888888888777
No 23
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=1.8e-53 Score=394.37 Aligned_cols=213 Identities=57% Similarity=0.990 Sum_probs=206.2
Q ss_pred eEEecCCcceeecccCCCCcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcC
Q 012397 20 KIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLG 99 (464)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g 99 (464)
++|||++++++.|.|..++++.+|+|||+|||++||||+|+++++|+++|++|++|++|.++.|+||+|+||+.+|+++|
T Consensus 1 ~~~~t~~~~~~~~~p~~~~~~~~y~~gpt~y~~~HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~A~~~g 80 (213)
T cd00672 1 RLYNTLTRQKEEFVPLNPGLVTMYVCGPTVYDYAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRAREEG 80 (213)
T ss_pred CcccCCCCceeeeecCCCCCceEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHHHHHHcC
Confidence 58999999999999988999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCCCCCCCCCCCcccccc
Q 012397 100 ENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENN 179 (464)
Q Consensus 100 ~~~~~~~~~~~~~~~~~l~~lgi~~~~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~~g~l~~~~~~~~ 179 (464)
++|+++++++.+.|.++++.|||++++.++|+
T Consensus 81 ~~p~e~~~~~~~~f~~~~~~l~i~~~d~~~rt------------------------------------------------ 112 (213)
T cd00672 81 LSWKEVADYYTKEFFEDMKALNVLPPDVVPRV------------------------------------------------ 112 (213)
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCCCCcceee------------------------------------------------
Confidence 99999999999999999999999977888886
Q ss_pred ccCCCcccCCcccCcccccccccccCCCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCccccchHHHHHHh
Q 012397 180 RAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSC 259 (464)
Q Consensus 180 ~~g~~~~~~~~k~~~~d~~~w~~~~~g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h~~~~~a~~~ 259 (464)
||++|++|+.+++|.++|+|++|.|++|||+.+++++..
T Consensus 113 -----------------------------------------Wh~ec~am~~~~lg~~~dih~~G~Dl~fpH~~~~~a~~~ 151 (213)
T cd00672 113 -----------------------------------------WHIECSAMAMKYLGETFDIHGGGVDLIFPHHENEIAQSE 151 (213)
T ss_pred -----------------------------------------hhHHHHHHHHHHcCCCccEEeecCCCCcChHHHHHHHHH
Confidence 899999999999999999999999999999999999999
Q ss_pred hccCCCCccEEEEeeeeeeCCcccccccCCccCHHHHHHhcCchhHHHHHhhcCCCCccCCC
Q 012397 260 AACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYS 321 (464)
Q Consensus 260 a~~~~~~~~~~~~~~~v~~~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~~~~~~~~f~ 321 (464)
+..+++++++|+|.|++.++|+|||||+||+|++.|+++++++|++|||+++.++.++++|+
T Consensus 152 a~~g~~~~~~~~h~~~v~~~g~KMSKs~Gn~v~~~dll~~~~~da~R~~~l~~~~~~~l~f~ 213 (213)
T cd00672 152 AATGKPFARYWLHTGHLTIDGEKMSKSLGNFITVRDALKKYDPEVLRLALLSSHYRSPLDFS 213 (213)
T ss_pred HHhCCCCCcEEEEEEEEeccCcchhhcCCCccCHHHHHHHcCHHHHHHHHHhCCcCCCCCCC
Confidence 98777889999999999999999999999999999999999999999999999999999986
No 24
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=100.00 E-value=3.8e-52 Score=460.79 Aligned_cols=421 Identities=17% Similarity=0.176 Sum_probs=317.1
Q ss_pred CcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHH----cCCCh-----------
Q 012397 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRAND----LGENP----------- 102 (464)
Q Consensus 38 ~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~----~g~~~----------- 102 (464)
++..|+.++|++||.|||||+++++++|+++|+.|++|++|+++.|+|+||.+|+..+++ .|.++
T Consensus 33 ~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~~~~~g~~~~~~~~e~f~~~ 112 (861)
T TIGR00422 33 PPFCIDIPPPNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTDHAGIATQVKVEKKLGAEGKTKHDLGREEFREK 112 (861)
T ss_pred CeEEEEeCCCCCCCCCcHHHhHHHHHHHHHHHHHHhcCCcccCCCCcCcCCCcHHHHHHHHhcccCCchhhCCHHHHHHH
Confidence 446677778888899999999999999999999999999999999999999998877653 35554
Q ss_pred -HHHHHHHHHHHHHHHHhcCCCCCCC---CCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCCCCCCCC--------
Q 012397 103 -LSLSNRYCQEYLVDMADLQCLPPTY---QPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGR-------- 170 (464)
Q Consensus 103 -~~~~~~~~~~~~~~l~~lgi~~~~~---~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~~g~-------- 170 (464)
++++++|.+.+.+.+++||++.+-. ++....+.+.++.+|.+|+++|+||++...++||+.|...+..
T Consensus 113 ~~~~~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~~~~v~wcp~~~t~lsd~Ev~~~~~ 192 (861)
T TIGR00422 113 IWEWKEESGGTIKNQIKRLGASLDWSRERFTMDEGLSKAVKEAFVRLYEKGLIYRGEYLVNWDPKLNTAISDIEVEYKEV 192 (861)
T ss_pred HHHHHHHHHHHHHHHHHHhCeeeecCCCcCcCCHHHHHHHHHHHHHHHHCCCeeecCcccccCCCCCCcchHhHhhcccc
Confidence 6789999999999999999986311 1223378899999999999999999999999998874211100
Q ss_pred ----------CC---------------------------------------------Cccc-------cccccCCCc---
Q 012397 171 ----------LS---------------------------------------------GQRL-------ENNRAGERV--- 185 (464)
Q Consensus 171 ----------l~---------------------------------------------~~~~-------~~~~~g~~~--- 185 (464)
+. +..+ .+...|+-+
T Consensus 193 ~~~~~~i~f~~~~~~~~~l~vaTtrPeTl~~~~av~V~P~~~ry~~l~g~~~~~P~~~~~ipii~~~~V~~~~GTG~V~~ 272 (861)
T TIGR00422 193 KGKLYYIRYPLANGSKDYLVVATTRPETMFGDTAVAVHPEDERYKHLIGKKVILPLTGRKIPIIADEYVDMEFGTGAVKV 272 (861)
T ss_pred cceEEEEEEEecCCCCCEEEEEeCCcchhhhCeEEEECCCchHHHHhcCCEEEcCCCCCcceeeecCCCCcccCCCceEe
Confidence 00 0000 000000000
Q ss_pred -----------------------------------------------------------ccCCcc-cCc-----------
Q 012397 186 -----------------------------------------------------------AVDSRK-RNP----------- 194 (464)
Q Consensus 186 -----------------------------------------------------------~~~~~k-~~~----------- 194 (464)
...... ..|
T Consensus 273 ~Pah~~~D~~~~~~~~l~~~~~id~~G~~~~~~~~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~R~g~~ve~ 352 (861)
T TIGR00422 273 TPAHDFNDYEWGKRHNLEFINILDEDGLLNENAGKYQGLTRFEARKKIVEDLKEEGLLVKIEPHTHNVGTCWRSGTVVEP 352 (861)
T ss_pred cCCCChHHHHHHHHcCCCccceeCCCCeEcCCCcccCCcCHHHhHHHHHHHHHhCCCeeeeeeeeccCCEeCCCCCEEEE
Confidence 000000 000
Q ss_pred ----ccc------------------ccc------------c-cccCCCCcccCCCCCCCCchhhH-HH------------
Q 012397 195 ----ADF------------------ALW------------K-AAKAGEPSWDSPWGPGRPGWHIE-CS------------ 226 (464)
Q Consensus 195 ----~d~------------------~~w------------~-~~~~g~~~~~~~wg~~~P~w~~~-~~------------ 226 (464)
.-| .-| . ..++..++|+..||.++|.|+.. |.
T Consensus 353 ~~~~qWFi~~~~~~~~~~~~~~~~~i~~~P~~~~~~~~~wl~~l~DW~ISRq~~WG~piP~w~~~~~~~~~v~~~~~~~~ 432 (861)
T TIGR00422 353 LLSKQWFVKVEKLADKALEAAEEGEIKFVPKRMEKRYLNWLRNIKDWCISRQLIWGHRIPVWYCKECGEVYVAKEEPLPD 432 (861)
T ss_pred EecCcceEecHHHHHHHHHHhhcCCeEEEChHHHHHHHHHHhccccceeeeecccCCcceEEEECCCCcEEeccchHHhh
Confidence 000 000 0 01233456778899999987631 10
Q ss_pred ---------------------------HHHH-hh------c--CCCeeEEEecccCccccchHHHHHHhhccCC-CCccE
Q 012397 227 ---------------------------AMSA-HY------L--SSKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSY 269 (464)
Q Consensus 227 ---------------------------~~~~-~~------~--~~~~~i~~~G~D~~~~h~~~~~a~~~a~~~~-~~~~~ 269 (464)
.++. .+ | -+|.|+++.|+|+++||...++++..++.++ ||.++
T Consensus 433 ~~~~~~~~~~~~~~~dVlDtWFdS~l~~~s~~g~p~~~~~~~~~~P~d~~~~G~Dii~fw~~~~~~~~~~~~~~~Pfk~v 512 (861)
T TIGR00422 433 DKTNTGPSVELEQDTDVLDTWFSSSLWPFSTLGWPDETKDLKKFYPTDLLVTGYDIIFFWVARMIFRSLALTGQVPFKEV 512 (861)
T ss_pred hhhccCCcccEEECCCcccceeccchHHHHHhCCCCChHHHhhcCCcceeecchhhhhHHHHHHHHHHHHhcCCCchheE
Confidence 0000 00 0 1378999999999999999999988888665 55888
Q ss_pred EEEeeeeee-CCcccccccCCccCHHHHHHhcCchhHHHHHhhc-CCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 012397 270 WMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALS 347 (464)
Q Consensus 270 ~~~~~~v~~-~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~-~~~~~~~f~~~~~~~~~~~l~~l~~~~~~~~~~l~ 347 (464)
++ ||+++. +|+|||||+||+|+|.|++++||+|++|||+++. +.++|++|+++.+.+.++.+.+|+|+.+++...+.
T Consensus 513 ~~-hG~v~d~~G~KMSKS~GN~i~p~~~i~~ygaDalR~~l~~~~~~~~d~~f~~~~~~~~~~~~nkl~N~~rf~~~~~~ 591 (861)
T TIGR00422 513 YI-HGLVRDEQGRKMSKSLGNVIDPLDVIEKYGADALRFTLASLVTPGDDINFDWKRVESARNFLNKLWNASRFVLMNLS 591 (861)
T ss_pred EE-eeEEECCCCCCCCcCCCCCCCHHHHHHHhChHHHHHHHHhCCCCCCCceecHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 66 599997 9999999999999999999999999999999987 66999999999999988889999997766655443
Q ss_pred ccc--c--CCCccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHH--HHHHHHhhhhcccCchhhhhhHHHHH
Q 012397 348 PFQ--E--HGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDAL--KFINSSLNMLKKKQPKQQQLSLIESL 421 (464)
Q Consensus 348 ~~~--~--~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~--~~~n~~~~~~~~~~~~~~~~~r~~~~ 421 (464)
... . .......|+|++.+++++++.+.++| ++|+++.|+.. +++|+ ..+|+|++..++|......+.+....
T Consensus 592 ~~~~~~~~~~~~~~~D~wil~~l~~~~~~v~~~~-e~~~f~~A~~~-l~~f~~~~~~n~Yie~~k~~~~~~~~~~~~~~~ 669 (861)
T TIGR00422 592 DDLELSGGEEKLSLADRWILSKLNRTIKEVRKAL-DKYRFAEAAKA-LYEFIWNDFCDWYIELVKYRLYNGNEAEKKAAR 669 (861)
T ss_pred cccccccccccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHH-HHHHHHHHHHHHHHHHhHHHHcCCCcHHHHHHH
Confidence 321 0 01124578999999999999999999 99999999999 99997 57899999999975322234456678
Q ss_pred HHHHHHHHHHHHhhc-cCCCccHHHHHHHhhh-hHhHhcCCCC
Q 012397 422 RKIENEVKEVLRILG-LLPPGAYSEVKTAFLV-LLHVFFDDSP 462 (464)
Q Consensus 422 ~~~~~~l~~~l~lLg-i~p~~~~e~i~~~l~~-~~~~~~~~~~ 462 (464)
.++.++|+.++.+|+ |+|+ +||+||+.|+. ..+++++.+|
T Consensus 670 ~~l~~~l~~~~~lL~Pf~P~-itEelw~~L~~~~~si~~~~~P 711 (861)
T TIGR00422 670 DTLYYVLDKALRLLHPFMPF-ITEEIWQHFKEGADSIMLQSYP 711 (861)
T ss_pred HHHHHHHHHHHHHHhhhhhH-HHHHHHHhCcccCCceeecCCC
Confidence 899999999999999 9999 99999999974 3578888888
No 25
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=100.00 E-value=2.2e-53 Score=429.28 Aligned_cols=293 Identities=24% Similarity=0.253 Sum_probs=218.7
Q ss_pred EEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q 012397 42 MYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQ 121 (464)
Q Consensus 42 v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lg 121 (464)
|.++.|+|||+|||||+++++.||+++|++|++|++|.+++|+|+||++|+.+|+++|++|++++++++..|++.++.+|
T Consensus 3 ITt~~pY~Ng~lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~~g~~p~~~~~~~~~~~~~~~~~~~ 82 (391)
T PF09334_consen 3 ITTPIPYPNGDLHLGHLYPYLAADVLARYLRLRGHDVLFVTGTDEHGSKIETAAEKQGIDPEEFCDKYSAKFKELLEALN 82 (391)
T ss_dssp EEEEEEETSSS-BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT
T ss_pred EecCCCCCCCCCCCChhHHHHHHHHHHHHHhhcccceeeEEecchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcC
Confidence 33445677799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcc--hhHHHHHHHHHHHHHCCceEeecCcEEEcCCC------------CCCCCC--------------CCC
Q 012397 122 CLPPTYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEK------------SPNYGR--------------LSG 173 (464)
Q Consensus 122 i~~~~~~~r~s--~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~------------~~~~g~--------------l~~ 173 (464)
|++ |.|.|++ +|.+.++++|++|.++|++|+++.++|||+.+ ||.||. +..
T Consensus 83 I~~-D~F~rTt~~~h~~~v~~i~~~L~~~G~I~~~~~~~~Yc~~~e~fl~e~~v~g~CP~C~~~~a~g~~Ce~cG~~~~~ 161 (391)
T PF09334_consen 83 ISY-DRFIRTTDDRHKEFVQEIFKRLYDNGYIYKREYEGWYCPSCERFLPESFVEGTCPYCGSDKARGDQCENCGRPLEP 161 (391)
T ss_dssp ----SEEEETTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTTTEEE-GGGETCEETTT--SSCTTTEETTTSSBEEC
T ss_pred CCC-cceeCCCCHHHHHHHHHHHHHHHhcCceeecccceeEecCcCcccccceeeccccCcCccccCCCcccCCCCCccc
Confidence 996 8888887 78899999999999999999999999999885 776661 111
Q ss_pred ccccccc---cCCCcccC----------Cc--------ccCcccccccccc---------cCC----CCcccCCCCCCCC
Q 012397 174 QRLENNR---AGERVAVD----------SR--------KRNPADFALWKAA---------KAG----EPSWDSPWGPGRP 219 (464)
Q Consensus 174 ~~~~~~~---~g~~~~~~----------~~--------k~~~~d~~~w~~~---------~~g----~~~~~~~wg~~~P 219 (464)
.++.+.. +|....+. .+ ..++ ++ |... +.| .++++.+||+++|
T Consensus 162 ~~l~~p~~~~~g~~~~~r~e~~~ff~L~~~~~~L~~~l~~~~-~~--~~~~~~~~~~~~l~~~L~d~~Is~~~~WGI~vP 238 (391)
T PF09334_consen 162 EELINPVCKICGSPPEVREEENYFFKLSKFRDQLREWLESNP-DF--PPPRVREIVRNWLKEGLPDLSISRPLDWGIPVP 238 (391)
T ss_dssp CCSECEEETTTS-B-EEEEEEEEEE-GGGGHHHHHHHHHHST-TS--SHHHHHHHHHHHHHT----EE-ECTTSSSEEET
T ss_pred ccccCCccccccccCccccceEEEEehHHhHHHHHHHHhcCC-CC--CChhHHHHHHHHhhcccCceeeecCCCCcceee
Confidence 2222221 23322111 00 0010 11 2110 122 2467789999999
Q ss_pred c--------hhhHHHHHH----------------Hhhc---CCCeeEEEecccCccccchHHHHHHhhccCCCCccEEEE
Q 012397 220 G--------WHIECSAMS----------------AHYL---SSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMH 272 (464)
Q Consensus 220 ~--------w~~~~~~~~----------------~~~~---~~~~~i~~~G~D~~~~h~~~~~a~~~a~~~~~~~~~~~~ 272 (464)
+ |++++..+. .++| +.+-.+|++|+|+++||.++||++++|.+.+.|.++++
T Consensus 239 ~~~~~~iyVWfdal~~Ylt~~~~~~~~~~~~~~~~~~w~~~~~~~~v~~iGkDi~~fH~i~~pa~l~a~~~~lP~~i~~- 317 (391)
T PF09334_consen 239 GDPGQVIYVWFDALIGYLTATGYLAEKRGDPEEFKKWWANDSDVEIVHFIGKDIIRFHAIYWPAMLLAAGLPLPRRIVV- 317 (391)
T ss_dssp TEEEEEE-HHHHHHTHHHHTTTTTHHHTTTSHHHHHHHCST--SEEEEEEEGGGHHHHHTHHHHHHHHCTB---SEEEE-
T ss_pred ccCCceEEEcchHHHHHHHHhccccccccccchhhhhccccCCceEEEEEccchhHHHHHHhHHHHhcccCCCCCEEEe-
Confidence 4 887653221 2244 12456999999999999999999999988788887755
Q ss_pred eeeeeeCCcccccccCCccCHHHHHHhcCchhHHHHHhhc-CCCCccCCCHHHHHHHHHH-----HHHHHHHH
Q 012397 273 NGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASDA-----VFYIYQTL 339 (464)
Q Consensus 273 ~~~v~~~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~-~~~~~~~f~~~~~~~~~~~-----l~~l~~~~ 339 (464)
|||++++|+|||||+||+|++.|+++.+|+|++||||++. +..+|.+|+++.+.+..|. ++||.+|+
T Consensus 318 ~~~~~~~g~K~SkS~gn~i~~~~~~~~~~~D~~R~~L~~~~~~~~d~~F~~~~~~~~~n~~L~~~~gNl~~R~ 390 (391)
T PF09334_consen 318 HGFLTLDGEKMSKSRGNVIWPDDLLEEYGADALRYYLAREGPEGQDSDFSWEDFIERVNNELANTLGNLVNRV 390 (391)
T ss_dssp E--EEETTCCEETTTTESSBHHHHHHHH-HHHHHHHHHHHSSTTS-EEE-HHHHHHHHHHCCCCCHHHHHHHH
T ss_pred eeeEEECCeeccccCCcccCHHHHHHhCChHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHhhhhHHhcc
Confidence 6999999999999999999999999999999999999997 8899999999999988764 77777764
No 26
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.1e-51 Score=453.95 Aligned_cols=417 Identities=15% Similarity=0.158 Sum_probs=312.6
Q ss_pred CcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHH-cCCChH------------H
Q 012397 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRAND-LGENPL------------S 104 (464)
Q Consensus 38 ~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~-~g~~~~------------~ 104 (464)
++..+..++|+|||.|||||+++++++|+++|++|++|++|.++.|+|+||.+|+..+++ .|+++. +
T Consensus 38 ~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~R~~r~~G~~v~~~~G~D~~Glpie~~~ek~~g~~~~~~~~~~f~~~~~~ 117 (800)
T PRK13208 38 PVYSIDTPPPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWDDNGLPTERKVEKYYGIRKDDISREEFIELCRE 117 (800)
T ss_pred CcEEEecCcCCCCCCccHHHHHhHHHHHHHHHHHHcCCCcccCCCCcCCCcchHHHHHHHHhCCCcccCCHHHHHHHHHH
Confidence 344555557888899999999999999999999999999999999999999999999987 488766 6
Q ss_pred HHHHHHHHHHHHHHhcCCCCC-CCCCCcc--hhHHHHHHHHHHHHHCCceEeecCcEEEcCCCCCCCCCCCCcccc----
Q 012397 105 LSNRYCQEYLVDMADLQCLPP-TYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLE---- 177 (464)
Q Consensus 105 ~~~~~~~~~~~~l~~lgi~~~-~~~~r~s--~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~~g~l~~~~~~---- 177 (464)
+++++.+.+.++++++|++.+ +.+.+|. +|.+.++.+|.+|.++|+||++...++||+.+...+. ..+++
T Consensus 118 ~~~~~~~~~~~~~~~lg~s~Dw~~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t~Ls---d~ev~~~~~ 194 (800)
T PRK13208 118 LTDEDEKKFRELWRRLGLSVDWSLEYQTISPEYRRISQKSFLDLYKKGLIYRAEAPVLWCPRCETAIA---QAEVEYRER 194 (800)
T ss_pred HHHHHHHHHHHHHHHhCeeeccCCCcccCCHHHHHHHHHHHHHHHHCCCeeecCcccccCCCCCCccc---hhhhccccc
Confidence 999999999999999999853 1333443 7889999999999999999999999999887421110 00000
Q ss_pred -------------------------------------------------------------------ccccCC-------
Q 012397 178 -------------------------------------------------------------------NNRAGE------- 183 (464)
Q Consensus 178 -------------------------------------------------------------------~~~~g~------- 183 (464)
+...|+
T Consensus 195 ~~~~~~ikf~~~~~~~l~v~TtrPeTl~g~~ai~v~p~~~~~~~l~g~~~~~P~~~~~ipii~~~~V~~~~GTG~V~~~p 274 (800)
T PRK13208 195 EGKLNYIKFPVEDGEEIEIATTRPELLPACVAVVVHPDDERYKHLVGKTAIVPLFGVEVPILADPLVDPDFGTGAVMICT 274 (800)
T ss_pred cceEEEEEEEecCCCEEEEEeCCcchhhhCeEEEECCCchHHHHhcCCEEEcCCCCCcceEECCCccCCCCCcceEEeCC
Confidence 000000
Q ss_pred -------------------------------------------------------CcccCCcc---------cCc-----
Q 012397 184 -------------------------------------------------------RVAVDSRK---------RNP----- 194 (464)
Q Consensus 184 -------------------------------------------------------~~~~~~~k---------~~~----- 194 (464)
.+...... ..+
T Consensus 275 ~hd~~D~~~~~~~~l~~~~~i~~~G~~~~~~g~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~ 354 (800)
T PRK13208 275 FGDKTDVTWWRELNLPTRIIIDEDGRMTEAAGKLAGLTIEEARKKIVEDLKSGGLLGKQEPIKHNVKFCERCDTPLEILV 354 (800)
T ss_pred CCCHHHHHHHHHcCCCcccccCCCceEecCCcccCCCCHHHHHHHHHHHHHhCCCeeceeeeeccCCccCCCCCEEEEec
Confidence 00000000 000
Q ss_pred --cccc----------------------------cccc-cc-CCCCcccCCCCCCCCchhhH-H----------------
Q 012397 195 --ADFA----------------------------LWKA-AK-AGEPSWDSPWGPGRPGWHIE-C---------------- 225 (464)
Q Consensus 195 --~d~~----------------------------~w~~-~~-~g~~~~~~~wg~~~P~w~~~-~---------------- 225 (464)
.-|. -|.. .. +..++|+..||.++|.|+.. |
T Consensus 355 ~~qwfl~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~~~~~DW~ISRqr~WG~pIP~~~~~~~g~~~~~~~~~l~~~~~ 434 (800)
T PRK13208 355 TRQWFIKVLDLKEELLERGKEINWYPEHMRVRLENWIEGLNWDWCISRQRYFGTPIPVWYCKDCGHPILPDEEDLPVDPT 434 (800)
T ss_pred cceeeEeCHHHHHHHHHhhcCcEEECHHHHHHHHHHHHhcCCCceeeeccccCCcceEEEeCCCCCeecCchhhhccCch
Confidence 0000 0000 01 34456778899999976521 0
Q ss_pred ---------H--------------------H---HH-Hh------hc--CCCeeEEEecccCccccchHHHHHHhhccCC
Q 012397 226 ---------S--------------------A---MS-AH------YL--SSKFDIHGGGIDLIFPHHENEIAQSCAACQD 264 (464)
Q Consensus 226 ---------~--------------------~---~~-~~------~~--~~~~~i~~~G~D~~~~h~~~~~a~~~a~~~~ 264 (464)
. . .+ .. .+ -+|.|+++.|+|++++|....+++..++.+.
T Consensus 435 ~d~~~~~~~~~~g~~~~~~~~dvlD~WfdS~~~~~~~~~~~~~~~~~~~~~P~d~~~~G~Di~~~w~~~~l~~~~~~~~~ 514 (800)
T PRK13208 435 KDEPPGYKCPQCGSPGFEGETDVMDTWATSSITPLIVTGWERDEDLFEKVFPMDLRPQGHDIIRTWLFYTILRAYLLTGK 514 (800)
T ss_pred hhccccccccccCCcCEEecCCEEEEEEeCCchHHHHhCCCCChhhhhhcCCceEEEeecchhhhHHHHHHHHHHHhcCC
Confidence 0 0 00 00 00 1378999999999999998888877776654
Q ss_pred -CCccEEEEeeeeee-CCcccccccCCccCHHHHHHhcCchhHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHHHHHHHH
Q 012397 265 -SNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDC 342 (464)
Q Consensus 265 -~~~~~~~~~~~v~~-~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~~~~~~~~f~~~~~~~~~~~l~~l~~~~~~~ 342 (464)
||.++++ ||+++. +|+|||||+||+|+|.|++++||+|++|||+++.++++|++|+++.+.+..+.+.+|+|+++++
T Consensus 515 ~Pf~~v~~-hg~v~~~~G~KMSKS~GN~i~p~~~i~~yg~D~lR~~l~~~~~~~d~~fs~~~~~~~~~~l~kl~N~~r~~ 593 (800)
T PRK13208 515 LPWKNIMI-SGMVLDPDGKKMSKSKGNVVTPEELLEKYGADAVRYWAASARLGSDTPFDEKQVKIGRRLLTKLWNASRFV 593 (800)
T ss_pred CCcceEEE-eeEEECCCCCCCCCCCCCCCCHHHHHHHcCccHHHHHHhcCCCCCCceecHHHHHHHHHHHHHHHHHHHHH
Confidence 6678755 699986 9999999999999999999999999999999966999999999999998888899999987765
Q ss_pred HHhcCccc--cCCCccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHH--HHHHHhhhhcccCchh-hhhhH
Q 012397 343 EVALSPFQ--EHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALK--FINSSLNMLKKKQPKQ-QQLSL 417 (464)
Q Consensus 343 ~~~l~~~~--~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~--~~n~~~~~~~~~~~~~-~~~~r 417 (464)
........ ........|+|++++++++++++.++| ++++++.|++. +++++. .+|.|++..++|.... ..+.+
T Consensus 594 ~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~~-e~~~f~~A~~~-i~~f~~~~~~n~Yie~~k~~~~~~~~~~~~ 671 (800)
T PRK13208 594 LHFSADPEPDKAEVLEPLDRWILAKLAKVVEKATEAL-ENYDFAKALEE-IESFFWHVFCDDYLELVKSRAYGEDEEEEQ 671 (800)
T ss_pred HhcccccccCccccCCHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHH-HHHHHHHHhhHHHHHHhhHHhcCCCCcHHH
Confidence 53221100 001124568999999999999999999 89999999999 999986 4899999998864211 12224
Q ss_pred HHHHHHHHHHHHHHHHhhc-cCCCccHHHHHHHhhhhHhHhcCCCC
Q 012397 418 IESLRKIENEVKEVLRILG-LLPPGAYSEVKTAFLVLLHVFFDDSP 462 (464)
Q Consensus 418 ~~~~~~~~~~l~~~l~lLg-i~p~~~~e~i~~~l~~~~~~~~~~~~ 462 (464)
...+.++.++|+.++.+|+ |+|+ +||+||+.|+ .-++++..||
T Consensus 672 ~~~~~~l~~~l~~l~~LLaPf~P~-iaEelw~~L~-~~si~~~~wP 715 (800)
T PRK13208 672 KSARYTLYTVLDTLLRLLAPFLPF-ITEEVWSWLY-GGSVHRASWP 715 (800)
T ss_pred HHHHHHHHHHHHHHHHHhcccchh-hHHHHHHhCC-CCceEeccCC
Confidence 5667889999999999999 9999 9999999998 3467777776
No 27
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.8e-50 Score=445.58 Aligned_cols=417 Identities=14% Similarity=0.143 Sum_probs=305.6
Q ss_pred CcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHH----HHHcCCCh-----------
Q 012397 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRR----ANDLGENP----------- 102 (464)
Q Consensus 38 ~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~----a~~~g~~~----------- 102 (464)
++..+..++|++||.|||||+++.++.|+++|+.|++|++|+|+.|+|+||.+++.+ +.+.|+++
T Consensus 36 ~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gi~~e~~ve~~l~~~g~~~~~~~re~f~~~ 115 (874)
T PRK05729 36 KPFSIVIPPPNVTGSLHMGHALNNTLQDILIRYKRMQGYNTLWLPGTDHAGIATQMVVERQLAAEGKSRHDLGREKFLEK 115 (874)
T ss_pred CCEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCccchhhHHHHHHHHHhcCCChHHCCHHHHHHH
Confidence 345666678888899999999999999999999999999999999999999865443 33447664
Q ss_pred -HHHHHHHHHHHHHHHHhcCCCCCC---CCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCCCC------------
Q 012397 103 -LSLSNRYCQEYLVDMADLQCLPPT---YQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSP------------ 166 (464)
Q Consensus 103 -~~~~~~~~~~~~~~l~~lgi~~~~---~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~------------ 166 (464)
++|+++|.+.+.+++++||++.+- .++....+.+.++++|.+|+++|+||++...++||+.+..
T Consensus 116 ~~~w~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~v~wcp~~~talsd~EV~~~~~ 195 (874)
T PRK05729 116 VWEWKEESGGTITNQLRRLGASCDWSRERFTMDEGLSKAVREVFVRLYEKGLIYRGKRLVNWDPKLQTALSDLEVEYKEV 195 (874)
T ss_pred HHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHHHHHCCCEeecCcccccCCCCCCcchhhhcccccc
Confidence 456999999999999999998531 2223337889999999999999999999999999987411
Q ss_pred ------------------------------------------------------CCCC----CCCccccccccCCCc---
Q 012397 167 ------------------------------------------------------NYGR----LSGQRLENNRAGERV--- 185 (464)
Q Consensus 167 ------------------------------------------------------~~g~----l~~~~~~~~~~g~~~--- 185 (464)
-+|+ +.+ +..+...|+-+
T Consensus 196 ~~~~~~i~f~~~~~~~~l~vaTtrPeTl~~~~avaV~P~d~ry~~l~g~~~~~P~~~~~ipii~~-~~V~~~~GTG~V~~ 274 (874)
T PRK05729 196 KGKLWHIRYPLADGSDYLVVATTRPETMLGDTAVAVNPEDERYKHLIGKTVILPLVGREIPIIAD-EYVDPEFGTGAVKI 274 (874)
T ss_pred cceEEEEEEEecCCCcEEEEEeCCcchhhcCeeEeECCCccHHHHhcCCEEECCCCCCeeeEecC-ccCCCCCCCcceEe
Confidence 0110 000 00000000000
Q ss_pred -----------------------------------------------------------ccCCccc-Cc-----------
Q 012397 186 -----------------------------------------------------------AVDSRKR-NP----------- 194 (464)
Q Consensus 186 -----------------------------------------------------------~~~~~k~-~~----------- 194 (464)
..+.+.. .|
T Consensus 275 ~Pah~~~D~~~~~~~~l~~~~~i~~~G~~~~~~~~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~R~~~~i~~ 354 (874)
T PRK05729 275 TPAHDPNDFEVGKRHNLPMINIMDEDGTINENPGEYQGLDRFEARKAIVADLEELGLLVKIEPHTHSVGHSDRSGVVIEP 354 (874)
T ss_pred cCCCCHHHHHHHHHcCCCcccccCCCCeEcCCCcccCCCCHHHHHHHHHHHHHhCCCeeeeEEeeccCCeeCCCCceEEE
Confidence 0000000 00
Q ss_pred ----c------c-------------cc-----------ccc-cccCCCCcccCCCCCCCCchhhHH-------------H
Q 012397 195 ----A------D-------------FA-----------LWK-AAKAGEPSWDSPWGPGRPGWHIEC-------------S 226 (464)
Q Consensus 195 ----~------d-------------~~-----------~w~-~~~~g~~~~~~~wg~~~P~w~~~~-------------~ 226 (464)
. + .. -|. ..++..++|+..||.++|.|+..- .
T Consensus 355 ~~~~QWFi~~~~~~~~~~~~v~~~~i~~~P~~~~~~~~~wl~~l~DWcISRq~~WG~pIP~~~~~~~~~~v~~~~~~~~~ 434 (874)
T PRK05729 355 YLSDQWFVKMKPLAKPALEAVENGEIKFVPERWEKTYFHWMENIQDWCISRQLWWGHRIPAWYDEDGEVYVGREEPEARE 434 (874)
T ss_pred EecCcceEehHHHHHHHHHHHhcCCcEEEChHHHHHHHHHHhcCccceeeeecccCCcccEEEeCCCcEEeCCccccccc
Confidence 0 0 00 000 012234567788999999775310 0
Q ss_pred -----------------H---HHH-h------hc--CCCeeEEEecccCccccchHHHHHHhhccCC-CCccEEEEeeee
Q 012397 227 -----------------A---MSA-H------YL--SSKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHV 276 (464)
Q Consensus 227 -----------------~---~~~-~------~~--~~~~~i~~~G~D~~~~h~~~~~a~~~a~~~~-~~~~~~~~~~~v 276 (464)
. ++. . .+ -+|.|+++.|+|++++|.....++..++.+. |+.++++ ||+|
T Consensus 435 ~~~~~~~~DvlDtWfsS~l~~~~~lgwp~~~~~~~~~~P~d~~~~G~Dii~~W~a~~~~~~~~~~~~~Pfk~v~~-hG~v 513 (874)
T PRK05729 435 KALLTQDEDVLDTWFSSALWPFSTLGWPEKTEDLKRFYPTSVLVTGFDIIFFWVARMIMMGLHFTGQVPFKDVYI-HGLV 513 (874)
T ss_pred ccCeEeCCceecceecCCccHHHHhCCCCCcHHHHhcCCcccccccccccchHHHHHHHHHHHhcCCCchhheEE-eeeE
Confidence 0 000 0 01 1378999999999887665544444444444 6678877 5999
Q ss_pred ee-CCcccccccCCccCHHHHHHhcCchhHHHHHhhc-CCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCccccCC-
Q 012397 277 TN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHG- 353 (464)
Q Consensus 277 ~~-~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~-~~~~~~~f~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~- 353 (464)
+. +|+|||||+||+|+|.|++++||+|++|||+++. ++++|++|+++.+.+..+.+++|+|+.+++...+.+.....
T Consensus 514 ~d~~G~KMSKSlGNvIdP~dvi~~yGaDalR~~ll~~~~~~~Di~fs~~~l~~~~~~~nkl~N~~Rf~~~~~~~~~~~~~ 593 (874)
T PRK05729 514 RDEQGRKMSKSKGNVIDPLDLIDKYGADALRFTLAALASPGRDIRFDEERVEGYRNFANKLWNASRFVLMNLEGADVGEL 593 (874)
T ss_pred ECCCCCCcccCCCCCCCHHHHHHHhChHHHHHHHHhCCCCCCCceeCHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccc
Confidence 95 9999999999999999999999999999999987 88999999999999999999999998776654443332111
Q ss_pred ----CccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHH--HHHHHHhhhhcccCchhhhhhHHHHHHHHHHH
Q 012397 354 ----KTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDAL--KFINSSLNMLKKKQPKQQQLSLIESLRKIENE 427 (464)
Q Consensus 354 ----~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~--~~~n~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 427 (464)
.....|+|++.+++++++.+.++| ++|+++.|+.. |++|+ ..+|.|++..++|.. + +.+.....++.++
T Consensus 594 ~~~~~~~~~D~wil~~l~~~~~~v~~~~-e~y~f~~a~~~-l~~f~~~~~~~~Yle~~k~~l~-~--~~~~~~~~~l~~~ 668 (874)
T PRK05729 594 PDPEELSLADRWILSRLNRTVAEVTEAL-DKYRFDEAARA-LYEFIWNEFCDWYLELAKPVLQ-E--AAKRATRATLAYV 668 (874)
T ss_pred cccccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHH-HHHHHHHHHHHHHHHHHHHHhh-h--hHHHHHHHHHHHH
Confidence 124568999999999999999999 99999999999 99998 478999999999843 1 2255677899999
Q ss_pred HHHHHHhhc-cCCCccHHHHHHHhhhh---HhHhcCCCC
Q 012397 428 VKEVLRILG-LLPPGAYSEVKTAFLVL---LHVFFDDSP 462 (464)
Q Consensus 428 l~~~l~lLg-i~p~~~~e~i~~~l~~~---~~~~~~~~~ 462 (464)
++.++.+|+ |+|+ +||+||+.|+.- .++++..+|
T Consensus 669 l~~~~~lL~Pf~Pf-itEelw~~l~~~~~~~si~~~~~P 706 (874)
T PRK05729 669 LEQILRLLHPFMPF-ITEELWQKLAPLGIEESIMLAPWP 706 (874)
T ss_pred HHHHHHHHcccchh-hHHHHHHhcccCCCCCceeecCCC
Confidence 999999999 9999 999999999742 257777777
No 28
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.8e-49 Score=442.68 Aligned_cols=417 Identities=14% Similarity=0.143 Sum_probs=302.7
Q ss_pred CcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHH-----cCCC-----------
Q 012397 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRAND-----LGEN----------- 101 (464)
Q Consensus 38 ~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~-----~g~~----------- 101 (464)
++..|+.++|++||.|||||++++++.|+++||+|++|++|+|+.|+|+||.+++...++ .|.+
T Consensus 48 ~~f~i~~pPP~~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~vl~~~G~D~~Glp~e~~ve~~l~~~~~~~~~~~~~e~f~~ 127 (1052)
T PRK14900 48 PPFSIVLPPPNVTGSLHLGHALTATLQDVLIRWKRMSGFNTLWLPGTDHAGIATQMIVEKELKKTEKKSRHDLGREAFLE 127 (1052)
T ss_pred CCEEEecCCCCCCCcchHHHHHhhHHHHHHHHHHHhcCCcccCCCCCCccchHHHHHHHHHhhhccCCChhhCCHHHHHH
Confidence 456777788999999999999999999999999999999999999999999998775543 2333
Q ss_pred -hHHHHHHHHHHHHHHHHhcCCCCCC---CCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCCCC-------CC--
Q 012397 102 -PLSLSNRYCQEYLVDMADLQCLPPT---YQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSP-------NY-- 168 (464)
Q Consensus 102 -~~~~~~~~~~~~~~~l~~lgi~~~~---~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~-------~~-- 168 (464)
+++|++++.+.+.+++++||++.+- .++...++.+.++.+|.+|+++|++|++...++||+.|-. .+
T Consensus 128 ~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~L~~~Gliyr~~~~v~wcp~~~T~Lsd~Ev~~~e 207 (1052)
T PRK14900 128 RVWAWKEQYGSRIGEQHKALGASLDWQRERFTMDEGLSRAVREVFVRLHEEGLIYREKKLINWCPDCRTALSDLEVEHEE 207 (1052)
T ss_pred HHHHHHHHHHHHHHHHHHHhchheecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEeccceeccCCCCCCCccHHHhcccC
Confidence 4668999999999999999998531 2233347889999999999999999999999999987410 00
Q ss_pred ---CC---------------------------------------------------CCCcc--------ccccccCCCcc
Q 012397 169 ---GR---------------------------------------------------LSGQR--------LENNRAGERVA 186 (464)
Q Consensus 169 ---g~---------------------------------------------------l~~~~--------~~~~~~g~~~~ 186 (464)
|. +.+.. ..+...|+-+.
T Consensus 208 ~~~~~~~~i~f~l~~~~~~l~vaTTrPeTl~~~~avaV~P~~~~y~~L~G~~~~~Pl~~~~ipIi~d~~~vd~~~GTG~V 287 (1052)
T PRK14900 208 AHQGELWSFAYPLADGSGEIVVATTRPETMLGDTAVAVHPLDPRYMALHGKKVRHPITGRTFPIVADAILVDPKFGTGAV 287 (1052)
T ss_pred CCCCeEEEEEEEecCCCcEEEEEECchhhhhcceeEEECCCcHHHHHhcCCEEECCCCCCeeEEEecccccCcCCCCCeE
Confidence 00 00000 00000010000
Q ss_pred cCCcccCccccc------------------------------------------------------------cccc----
Q 012397 187 VDSRKRNPADFA------------------------------------------------------------LWKA---- 202 (464)
Q Consensus 187 ~~~~k~~~~d~~------------------------------------------------------------~w~~---- 202 (464)
....-+.+.||. .|+.
T Consensus 288 ~~~Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~~~~~Gl~~~ear~~Ii~~L~~~g~l~~~~~~~h~~~~c~R~~~~i 367 (1052)
T PRK14900 288 KVTPAHDFNDFEVGKRHGLEMITVIGPDGRMTAEAGPLAGLDRFEARKEVKRLLAEQGLDRGAKPHVLPLGRCQRSATIL 367 (1052)
T ss_pred EecCCCChhHHHHHHHcCCCccceECCCcEEecCCcccCCcCHHHHHHHHHHHHHhCCCeecceeeeccCceeCCCCceE
Confidence 000000000000 0000
Q ss_pred ---------------------------------------------ccCCCCcccCCCCCCCCchhhH-------------
Q 012397 203 ---------------------------------------------AKAGEPSWDSPWGPGRPGWHIE------------- 224 (464)
Q Consensus 203 ---------------------------------------------~~~g~~~~~~~wg~~~P~w~~~------------- 224 (464)
..+..++|+..||.++|.|+..
T Consensus 368 e~~~s~qWFi~l~~~k~~~~~~v~~~~~~~~P~~~~~~~~~wl~~l~DW~ISRqr~WG~PIP~w~~~~~~~~v~~~~~~~ 447 (1052)
T PRK14900 368 EPLLSDQWYVRIEPLARPAIEAVEQGRTRFIPEQWTNTYMAWMRNIHDWCISRQLWWGHQIPAWYCPDGHVTVARETPEA 447 (1052)
T ss_pred EEEeccceeeehHHHHHHHHHHHhcCCcEEEChHHHHHHHHHHhcCccceEEeecCCCceeCeEEcCCCcEEeccccccc
Confidence 1123346677899999988521
Q ss_pred ---H--------------------HHHHH-hh------c--CCCeeEEEecccCccccchHHHHHHhhcc----CC-CCc
Q 012397 225 ---C--------------------SAMSA-HY------L--SSKFDIHGGGIDLIFPHHENEIAQSCAAC----QD-SNV 267 (464)
Q Consensus 225 ---~--------------------~~~~~-~~------~--~~~~~i~~~G~D~~~~h~~~~~a~~~a~~----~~-~~~ 267 (464)
| ..++. .+ | .+|.|++++|+|++++ |++++++.+ +. ||.
T Consensus 448 ~~~~~~~~~~~~~dVlDvWFdS~l~y~s~~g~p~~~~~~~~~~P~d~~~~G~Dii~~----W~a~~l~~~~~~~~~~Pfk 523 (1052)
T PRK14900 448 CSTCGKAELRQDEDVLDTWFSSGLWPFSTMGWPEQTDTLRTFYPTSVMETGHDIIFF----WVARMMMMGLHFMGEVPFR 523 (1052)
T ss_pred ccccCccceecCCceEEEEEcCChHHHHHHcCCCchHHHHhhCCchhhcccccHHhH----HHHHHHHHHHHhcCCCccc
Confidence 0 00000 00 1 1378999999998765 555554432 33 557
Q ss_pred cEEEEeeeeee-CCcccccccCCccCHHHHHHhcCchhHHHHHhhc-CCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 012397 268 SYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVA 345 (464)
Q Consensus 268 ~~~~~~~~v~~-~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~-~~~~~~~f~~~~~~~~~~~l~~l~~~~~~~~~~ 345 (464)
.+++ |||++. +|+|||||+||+|+|.|+++.||+|++|||+++. +.++|++|+++.+....+.+.+|+|..+.+...
T Consensus 524 ~V~~-hG~v~d~~G~KMSKSkGNvIdP~dvIe~yGaDalR~~L~~~~~~g~D~~fs~~~l~~~~~f~nkl~N~~R~~~~~ 602 (1052)
T PRK14900 524 TVYL-HPMVRDEKGQKMSKTKGNVIDPLVITEQYGADALRFTLAALTAQGRDIKLAKERIEGYRAFANKLWNASRFALMN 602 (1052)
T ss_pred eeEe-cccEECCCCCCccCCCCCCCCHHHHHHHhCcHHHHHHHHhcCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7766 699998 9999999999999999999999999999999987 899999999999988888888999966555444
Q ss_pred cCcccc-CC-----CccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHH--HHHHHHhhhhcccCchhhhhhH
Q 012397 346 LSPFQE-HG-----KTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDAL--KFINSSLNMLKKKQPKQQQLSL 417 (464)
Q Consensus 346 l~~~~~-~~-----~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~--~~~n~~~~~~~~~~~~~~~~~r 417 (464)
+..+.. .. .....|+|++.+++.++.++.++| ++|+++.|+.. +++|+ ..+|+|++..+++........+
T Consensus 603 ~~~~~~~~~~~~~~~~~~~D~wils~l~~~i~~v~~~~-e~y~f~~A~~~-i~~f~~~~~~n~Yie~~k~~l~~~~~~~~ 680 (1052)
T PRK14900 603 LSGYQERGEDPARLARTPADRWILARLQRAVNETVEAL-EAFRFNDAANA-VYAFVWHELCDWYIELAKEALASEDPEAR 680 (1052)
T ss_pred hhccCcccccccccccCHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHH-HHHHHHHhhhHHHHHhccHhhccCCHHHH
Confidence 433311 11 124568999999999999999999 99999999999 99997 4789999998875321122234
Q ss_pred HHHHHHHHHHHHHHHHhhc-cCCCccHHHHHHHhhhh-------HhHhcCCCC
Q 012397 418 IESLRKIENEVKEVLRILG-LLPPGAYSEVKTAFLVL-------LHVFFDDSP 462 (464)
Q Consensus 418 ~~~~~~~~~~l~~~l~lLg-i~p~~~~e~i~~~l~~~-------~~~~~~~~~ 462 (464)
.....++.++|+.++.+|+ |+|+ +||+||+.|+.- .+++++.||
T Consensus 681 ~~~~~~L~~~L~~l~~LLaPfmP~-~aEeiw~~L~~~~~~~~~~~SV~~~~wP 732 (1052)
T PRK14900 681 RSVQAVLVHCLQTSYRLLHPFMPF-ITEELWHVLRAQVGASAWADSVLAAEYP 732 (1052)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhHH-HHHHHHHHhccccccCCCCCceeecCCC
Confidence 4566788999999999999 9999 999999999641 468888887
No 29
>PLN02943 aminoacyl-tRNA ligase
Probab=100.00 E-value=2.5e-48 Score=430.62 Aligned_cols=417 Identities=15% Similarity=0.121 Sum_probs=303.5
Q ss_pred CcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHH----HcCCC------------
Q 012397 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRAN----DLGEN------------ 101 (464)
Q Consensus 38 ~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~----~~g~~------------ 101 (464)
++-.+..++|+++|.|||||++++++.|+++|+.|++|++|+|+.|+|++|.+++.+.+ +.|++
T Consensus 88 ~~f~i~~pPP~~tG~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gl~~e~~vek~l~~~~~~~~~~~re~f~~~ 167 (958)
T PLN02943 88 DPFVIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGTDHAGIATQLVVEKMLASEGIKRTDLGRDEFTKR 167 (958)
T ss_pred CCEEEecCCCCCCCchhHHHHHHHHHHHHHHHHHHhcCCeeecCCCCCcccchhHHHHHHHHHHcCCChhhCCHHHHHHH
Confidence 34555555789999999999999999999999999999999999999999998866443 34654
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCCC---CCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCCC-------------
Q 012397 102 PLSLSNRYCQEYLVDMADLQCLPPT---YQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS------------- 165 (464)
Q Consensus 102 ~~~~~~~~~~~~~~~l~~lgi~~~~---~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~------------- 165 (464)
++++++++.+.+.+.+++||++.+- .++....+.+.+++.|.+|+++|+||++...++||+.+.
T Consensus 168 ~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~l~~~Gliyr~~~~V~wcp~~~Tals~~Evey~e~ 247 (958)
T PLN02943 168 VWEWKEKYGGTITNQIKRLGASCDWSRERFTLDEQLSRAVVEAFVRLHEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSEE 247 (958)
T ss_pred HHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHHHHHCCCEEecCceeccCCCCCCCcCHHHhhcccc
Confidence 4678899999999999999998531 222233788999999999999999999999999998841
Q ss_pred ---------C--C-C-CC-------------------------------------CC-Cccc-------cccccCCCccc
Q 012397 166 ---------P--N-Y-GR-------------------------------------LS-GQRL-------ENNRAGERVAV 187 (464)
Q Consensus 166 ---------~--~-~-g~-------------------------------------l~-~~~~-------~~~~~g~~~~~ 187 (464)
+ . - .. +. ++.+ .+...|+-+..
T Consensus 248 ~~~~~~i~f~l~~~~~~~l~vaTTrPeTl~~~~avavnP~d~ry~~l~g~~~~~Pl~~~~~ipii~~~~V~~~~GTG~V~ 327 (958)
T PLN02943 248 PGTLYYIKYRVAGGSEDFLTIATTRPETLFGDVAIAVNPEDDRYSKYIGKMAIVPMTYGRHVPIIADRYVDKDFGTGVLK 327 (958)
T ss_pred cccEEEEEEEEcCCCCCEEEEEeCChhhhhcceEEEECCCCHHHHHHcCCEEECCCcCCCeeeEEecCcccCCCCCceEE
Confidence 0 0 0 00 00 0000 00000000000
Q ss_pred CCcccCccccc--------------------------------------------------------cccc---------
Q 012397 188 DSRKRNPADFA--------------------------------------------------------LWKA--------- 202 (464)
Q Consensus 188 ~~~k~~~~d~~--------------------------------------------------------~w~~--------- 202 (464)
...-+.+.||. .|+.
T Consensus 328 ~~Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~g~~~~ear~~iv~~L~~~g~l~~~e~~~~~~p~c~R~~~~Ie~~~~ 407 (958)
T PLN02943 328 ISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLYWFEAREKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVS 407 (958)
T ss_pred eCCCCChHHHHHHHHcCCCceeeeCCCceeeccCCccHHHHHHHHHHHHHHCCCeeeeeeeecCCCeeCCCCcEeEEEec
Confidence 00000000000 0000
Q ss_pred ----------------------------------------ccCCCCcccCCCCCCCCchhhH---HHH------------
Q 012397 203 ----------------------------------------AKAGEPSWDSPWGPGRPGWHIE---CSA------------ 227 (464)
Q Consensus 203 ----------------------------------------~~~g~~~~~~~wg~~~P~w~~~---~~~------------ 227 (464)
.++..++|+..||.++|.|+++ |..
T Consensus 408 ~QWFi~~~~l~~~~l~~v~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQr~WG~pIP~w~~~~~~~~~~~~v~~~~~~~~ 487 (958)
T PLN02943 408 KQWFVTMEPLAEKALKAVENGELTIIPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWYIVGKDCEEDYIVARSAEEAL 487 (958)
T ss_pred cceeEEHHHHHHHHHHHHhcCCcEEEChHHHHHHHHHHhcCccceEEEecCCCCccCceeccccCCCceEEecCcHHHHH
Confidence 0122345677899999999852 110
Q ss_pred ------------HHH--h--------------hcC------------CCeeEEEecccCccccchHHHHHHhhcc----C
Q 012397 228 ------------MSA--H--------------YLS------------SKFDIHGGGIDLIFPHHENEIAQSCAAC----Q 263 (464)
Q Consensus 228 ------------~~~--~--------------~~~------------~~~~i~~~G~D~~~~h~~~~~a~~~a~~----~ 263 (464)
+.. . .+| +|.|+++.|+|+++| |++++.+.+ +
T Consensus 488 ~~~~~~~g~~~~~~~~~DVlDtWFdS~l~p~s~lgwp~~~~~~~~~~yP~dl~~~G~Dii~f----W~a~m~~~~~~~~~ 563 (958)
T PLN02943 488 EKAREKYGKDVEIYQDPDVLDTWFSSALWPFSTLGWPDVSAEDFKKFYPTTVLETGHDILFF----WVARMVMMGIEFTG 563 (958)
T ss_pred HHhhhhcCCchheeecCceEEEEEcCccchHHhcCCCccChHHHhccCCCeEEEEeehHHHH----HHHHHHHhhhhhcC
Confidence 000 0 011 378999999998755 666654433 3
Q ss_pred C-CCccEEEEeeeeee-CCcccccccCCccCHHHHHHhcCchhHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHHHHHHH
Q 012397 264 D-SNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQD 341 (464)
Q Consensus 264 ~-~~~~~~~~~~~v~~-~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~~~~~~~~f~~~~~~~~~~~l~~l~~~~~~ 341 (464)
. |+.++++| |+++. +|+|||||+||+|+|.|++++||+|++|||+++.++++|++|+++.+.+..+.+.+|+|+.++
T Consensus 564 ~~Pf~~v~~h-g~v~~~~G~KMSKS~GN~i~p~~~i~~ygaDalR~~l~~~~~~~d~~fs~~~l~~~~~~~~kl~N~~rf 642 (958)
T PLN02943 564 TVPFSYVYLH-GLIRDSQGRKMSKTLGNVIDPLDTIKEFGTDALRFTLALGTAGQDLNLSTERLTSNKAFTNKLWNAGKF 642 (958)
T ss_pred CCChheEEEe-ccEECCCCCcccCcCCCCCCHHHHHHhcCChHHHHHHHhCCCCCCccccHHHHHHHHHHHHHHHHHHHH
Confidence 3 67889885 78875 999999999999999999999999999999998877999999999999988889999999888
Q ss_pred HHHhcCcc-------------ccCC----CccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHH--HHHHHHh
Q 012397 342 CEVALSPF-------------QEHG----KTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDAL--KFINSSL 402 (464)
Q Consensus 342 ~~~~l~~~-------------~~~~----~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~--~~~n~~~ 402 (464)
+.+.+... .+.. .....|+|++.+++++++++.++| ++|+++.|+.. +++|+ ..+|.|+
T Consensus 643 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~wilskl~~~i~~v~~~~-e~y~f~~A~~~-i~~f~~~~~~d~Yi 720 (958)
T PLN02943 643 VLQNLPSQSDTSAWEHILACKFDKEESLLSLPLPECWVVSKLHELIDSVTTSY-DKYFFGDVGRE-IYDFFWSDFADWYI 720 (958)
T ss_pred HHhccccccccccccccccccCCccccccccCHHHHHHHHHHHHHHHHHHHHH-HhcChhHHHHH-HHHHHHHHHHHHHH
Confidence 76654211 0110 123568999999999999999999 99999999999 99995 6789999
Q ss_pred hhhcccCchh-hhhhHHHHHHHHHHHHHHHHHhhc-cCCCccHHHHHHHhhh-hHhHhcCCCC
Q 012397 403 NMLKKKQPKQ-QQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVKTAFLV-LLHVFFDDSP 462 (464)
Q Consensus 403 ~~~~~~~~~~-~~~~r~~~~~~~~~~l~~~l~lLg-i~p~~~~e~i~~~l~~-~~~~~~~~~~ 462 (464)
+..+++...+ ....+.....++.++++.++.+|+ |+|+ +||+||+.|+. ..+++++.||
T Consensus 721 E~~Kprl~~~~~~~~~~~a~~vL~~vl~~ll~LL~PfmPf-itEELwq~L~~~~~si~~~~wP 782 (958)
T PLN02943 721 EASKTRLYHSGDNSALSRAQAVLLYVFENILKLLHPFMPF-VTEELWQALPYRKEALIVSPWP 782 (958)
T ss_pred HhccHhhccCCchHHHHHHHHHHHHHHHHHHHHHhCcchh-HHHHHHHHcCCCCCceeecCCC
Confidence 9999864221 123355677888999999999999 9999 99999999963 2367777777
No 30
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.9e-48 Score=429.27 Aligned_cols=417 Identities=16% Similarity=0.162 Sum_probs=309.1
Q ss_pred ceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHc------CCChH-------HHH
Q 012397 40 VGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDL------GENPL-------SLS 106 (464)
Q Consensus 40 ~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~------g~~~~-------~~~ 106 (464)
..+..++|++||.|||||+++.++.|+++|+.|++|++|.|+.|+|.||.+|+.+++++ ++++. +++
T Consensus 51 f~i~~~pPyanG~lHiGHa~~~~~~Dii~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~f~~~c~~~~ 130 (912)
T PRK05743 51 FILHDGPPYANGDIHIGHALNKILKDIIVKSKTMSGFDAPYVPGWDCHGLPIELKVEKKLGKKGKKLSAAEFRKKCREYA 130 (912)
T ss_pred EEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHccCCcccCCCCcCCCccHhHHHHHHHcCCccccCCHHHHHHHHHHHH
Confidence 44455567777999999999999999999999999999999999999999999999774 55654 599
Q ss_pred HHHHHHHHHHHHhcCCCCC-CCCCCc--chhHHHHHHHHHHHHHCCceEeecCcEEEcCCCC------------------
Q 012397 107 NRYCQEYLVDMADLQCLPP-TYQPRV--SDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS------------------ 165 (464)
Q Consensus 107 ~~~~~~~~~~l~~lgi~~~-~~~~r~--s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~------------------ 165 (464)
+++.+.+.+++++||+..+ +....| .++.+.++++|.+|+++|++|++...++||+.+-
T Consensus 131 ~~~~~~~~~~~~~lG~~~dw~~~~~T~~~~~~~~v~~~f~~l~~~Gliy~~~~~v~w~p~~~TaLad~Evey~~~~s~~~ 210 (912)
T PRK05743 131 LEQVDIQREDFKRLGVLGDWDNPYLTMDFKYEANIIRALGKMAKKGYLYKGLKPVYWCPDCGSALAEAEVEYHDKTSPSI 210 (912)
T ss_pred HHHHHHHHHHHHHhCCcccCCCCcCCCCHHHHHHHHHHHHHHHHCCCEEecceeEecCCCcCCCchhhHhhcccccCceE
Confidence 9999999999999999632 222222 3788999999999999999999999999998841
Q ss_pred ----C--C-------CCC-------------------CCCcc-----------c--------------------------
Q 012397 166 ----P--N-------YGR-------------------LSGQR-----------L-------------------------- 176 (464)
Q Consensus 166 ----~--~-------~g~-------------------l~~~~-----------~-------------------------- 176 (464)
+ . .+. +.+.. .
T Consensus 211 yv~f~l~~~~~~~~~~~~~l~i~TTrP~Tl~~n~aiav~p~~~Y~~~~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~ 290 (912)
T PRK05743 211 YVAFPVVDGKLAAAFKDASLVIWTTTPWTLPANQAIAVHPEFDYVLVEVEGEKLIVAKDLVESVLERFGWEDYEVLATFK 290 (912)
T ss_pred EEEEEecCcchhcccCCCEEEEEeCCChhhhhCeEEEECCCCeeEEEEcCCCEEEEeHHhHHHHHHhhCCcceEEEEEec
Confidence 1 0 000 00000 0
Q ss_pred -cccccCC-----------------CcccCC--------cccCcccccc-------------------------------
Q 012397 177 -ENNRAGE-----------------RVAVDS--------RKRNPADFAL------------------------------- 199 (464)
Q Consensus 177 -~~~~~g~-----------------~~~~~~--------~k~~~~d~~~------------------------------- 199 (464)
.++ .|. .|..+. .-+.+.|+.+
T Consensus 291 G~~l-~g~~~~~Pl~~~~~pvi~~~~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~L~~~~~vd~~G~~~~~~~~~~Gl~v~ 369 (912)
T PRK05743 291 GKEL-EGLVAQHPFYDRDSPVILGDHVTLDAGTGLVHTAPGHGEDDYVVGQKYGLEVLNPVDDDGRYTEEAPLFAGLFVF 369 (912)
T ss_pred hHhh-cCCEEECCCCCCeeeEeCCCccCCCCCcCeEEeCCCCCHHHHHHHHHcCCCcccccCCCceEecCCcccCCcCHH
Confidence 000 000 000000 0000001110
Q ss_pred -----------------------------cccc-----------------------------------------------
Q 012397 200 -----------------------------WKAA----------------------------------------------- 203 (464)
Q Consensus 200 -----------------------------w~~~----------------------------------------------- 203 (464)
|+..
T Consensus 370 ea~~~Ii~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~~~QWFi~~~~~~~k~~~l~~~~~v~~~P~~~~~r~~~~i~ 449 (912)
T PRK05743 370 KANPKIIEKLEEKGALLKEEKITHSYPHCWRTKKPVIFRATPQWFISMDKKGLREQALKAIEKVKWIPAWGKNRIESMVE 449 (912)
T ss_pred HhHHHHHHHHHhCCCeeeeeeeeccCCeecCCCCEEEEEecCcccEeCChHHHHHHHHHHHcccEEEChHHHHHHHHHHh
Confidence 1100
Q ss_pred --cCCCCcccCCCCCCCCchhhH-H----------------------------------H---H-HH-----Hh-h----
Q 012397 204 --KAGEPSWDSPWGPGRPGWHIE-C----------------------------------S---A-MS-----AH-Y---- 232 (464)
Q Consensus 204 --~~g~~~~~~~wg~~~P~w~~~-~----------------------------------~---~-~~-----~~-~---- 232 (464)
.+..++|+..||.++|.|+.. | . . +. .. +
T Consensus 450 ~~~DWcISRQR~WG~PIP~~~~~~~g~~~~~~~~~~~i~~~~~~~g~~~W~~~~~~~~~~~~~~~~~~~~DvlDvWfdSg 529 (912)
T PRK05743 450 NRPDWCISRQRTWGVPIPIFYHKETGELHPTPELIEHVAKLFEKEGIDAWFELDAKELLPDEADEYEKETDILDVWFDSG 529 (912)
T ss_pred cCcCccccccceeCceEEEEEECCCCcEeecHHHHHHHHHHHHhhCCccccccCHHHhcCCcccCEEECCchhhhhhhhC
Confidence 111235566799999987631 1 0 0 00 00 0
Q ss_pred ------------cCCCeeEEEecccCcc--ccchHHHHHHhhccCCCCccEEEEeeeeee-CCcccccccCCccCHHHHH
Q 012397 233 ------------LSSKFDIHGGGIDLIF--PHHENEIAQSCAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQIT 297 (464)
Q Consensus 233 ------------~~~~~~i~~~G~D~~~--~h~~~~~a~~~a~~~~~~~~~~~~~~~v~~-~G~KmSks~gn~i~~~dll 297 (464)
..+|.|++++|+|+++ ||...+++..+ .+..||.++++ |||++. +|+|||||+||+|+|.+++
T Consensus 530 ~s~~~~~~~~~~~~~P~Dl~~~G~Di~r~Wf~~~l~~~~~~-~g~~P~k~vl~-HG~vld~~G~KMSKSlGNvIdP~~ii 607 (912)
T PRK05743 530 SSHAAVLEQRPELGYPADLYLEGSDQHRGWFQSSLLTSVAT-RGKAPYKQVLT-HGFTVDGKGRKMSKSLGNVIDPQDVI 607 (912)
T ss_pred CCHHHHhcCccccCCCceEEEecccccchHHHHHHHHHHHh-cCCCccceeEE-eeeEECCCCCCCCCCCCCcCCHHHHH
Confidence 1247999999999997 55666666665 45567777755 699998 9999999999999999999
Q ss_pred HhcCchhHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCccccC------CCccCCChhHHHHHHHHHH
Q 012397 298 ERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEH------GKTARINPAAEDCINKLRD 371 (464)
Q Consensus 298 ~~~~~dalR~~ll~~~~~~~~~f~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~------~~~~~~d~~l~~~l~~~~~ 371 (464)
++||+|++|||+++.++++|++|+.+.+.+..+.+.+|+|+++++.+.+.+.... ......|+|++.+++++++
T Consensus 608 ~~yGaDalR~~ll~~~~~~D~~~s~~~l~~~~~~~~kl~N~~rf~~~nl~~~~~~~~~~~~~~l~~~D~~il~~l~~~~~ 687 (912)
T PRK05743 608 KKYGADILRLWVASTDYSGDVRISDEILKQVAEAYRRIRNTLRFLLGNLNDFDPAKDAVPYEELLELDRWALHRLAELQE 687 (912)
T ss_pred HhcChHHHHHHHHhcCCCCCeeecHHHHHHHHHHHHHHHHHHHHHHhCccCCCcccccCCchhCCHHHHHHHHHHHHHHH
Confidence 9999999999999888999999999999988888889999988877666543211 1124568999999999999
Q ss_pred HHHHHHhcccChHHHHHHHHHHHH--HHHHHHhhhhcc--cCchhhhhhHHHHHHHHHHHHHHHHHhhc-cCCCccHHHH
Q 012397 372 EFHARMSDDLNTSHILTGAFQDAL--KFINSSLNMLKK--KQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEV 446 (464)
Q Consensus 372 ~v~~~~~~~~~~~~al~~yl~~l~--~~~n~~~~~~~~--~~~~~~~~~r~~~~~~~~~~l~~~l~lLg-i~p~~~~e~i 446 (464)
++.++| ++|+++.|+.. +++|+ ...|.|++..++ |...+....|..+..+++.++..++.+|+ |+|+ +||+|
T Consensus 688 ~v~~~~-e~~~f~~a~~~-l~~f~~~~ls~~Yie~~K~rly~~~~~~~~r~~~~~vL~~~l~~l~~lLaPi~P~-~aEel 764 (912)
T PRK05743 688 EILEAY-ENYDFHKVYQK-LHNFCSVDLSAFYLDIIKDRLYTDAADSLARRSAQTALYHILEALVRWLAPILSF-TAEEI 764 (912)
T ss_pred HHHHHH-HhcCHHHHHHH-HHHHhhhhhceeeheeccHhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHH
Confidence 999999 99999999999 99999 356899999888 44333334466666788899999999999 9999 99999
Q ss_pred HHHhh--hhHhHhcCCCC
Q 012397 447 KTAFL--VLLHVFFDDSP 462 (464)
Q Consensus 447 ~~~l~--~~~~~~~~~~~ 462 (464)
|+.|+ ...+++++.||
T Consensus 765 w~~l~~~~~~sv~~~~wP 782 (912)
T PRK05743 765 WQYLPGEREESVFLEEWP 782 (912)
T ss_pred HHhcccCCCCceEEecCC
Confidence 99994 34578888887
No 31
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.6e-48 Score=406.68 Aligned_cols=362 Identities=18% Similarity=0.153 Sum_probs=284.0
Q ss_pred CCCcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHH
Q 012397 36 VRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLV 115 (464)
Q Consensus 36 ~~~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~ 115 (464)
.++++.|++|||||+|++||||+|++++||+++|++|++|++|.+++++||+|+++...+...+..++++++.+.+.|.+
T Consensus 109 ~~~~v~Ie~~spnp~g~lHiGH~R~~iigD~laR~lr~~G~~V~~~~~i~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~ 188 (507)
T PRK01611 109 KGKKVVVEYVSANPTGPLHVGHLRSAVIGDALARILEFAGYDVTREYYVNDAGTQIGMLIASLELLWRKAVDISLDEIKE 188 (507)
T ss_pred CCCEEEEEecCCCCCCCCcCCchHHHHHHHHHHHHHHHcCCcEEEEeeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45799999999999999999999999999999999999999999999999999999888888888899999999999999
Q ss_pred HHHhcCCCCCCCCCCcch--hHHHHHHHHHHHHHCCceE-eecCcEEEcCCCCCCCCCCCCccccccccCCCcccCCccc
Q 012397 116 DMADLQCLPPTYQPRVSD--HMEQIKDMITQIINNDCAY-VVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKR 192 (464)
Q Consensus 116 ~l~~lgi~~~~~~~r~s~--~~~~~~~~~~~L~~~G~~y-~~~~~~~~~~~~~~~~g~l~~~~~~~~~~g~~~~~~~~k~ 192 (464)
+|++|||.+ |.+.++++ +...+++++++|.++|++| +.++.+|++.... |
T Consensus 189 ~l~~LgI~~-D~~~~es~~~~~~~~~~~~~~L~~~G~~y~~~~Ga~~~~~~~~---~----------------------- 241 (507)
T PRK01611 189 DLDRLGVHF-DVWFSESELYYNGKVDEVVEDLKEKGLLYVESDGALWVRLTEF---G----------------------- 241 (507)
T ss_pred HHHHcCCee-eEEeecCcchhcchHHHHHHHHHHCCCEEEeeCCcEEEEchhh---C-----------------------
Confidence 999999996 66666663 4568999999999999999 8888888864321 1
Q ss_pred CcccccccccccCCCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCccccchHHHHHHhhccCCCC-ccEEE
Q 012397 193 NPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSN-VSYWM 271 (464)
Q Consensus 193 ~~~d~~~w~~~~~g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h~~~~~a~~~a~~~~~~-~~~~~ 271 (464)
++.|+.++|+ +|..+|... .++|+..+.. . + ...|++.|.||. .|.....+.+.++|..++ ..++.
T Consensus 242 ~~~~~vl~ks--dG~~~Y~t~----Dia~~~~k~~---~-~--d~~i~V~g~~q~-~hf~~~~~~~~~lg~~~~~~~~~~ 308 (507)
T PRK01611 242 DDKDRVLIKS--DGTYTYFTR----DIAYHLYKFE---R-F--DRVIYVVGADHH-GHFKRLKAALKALGYDPDALEVLL 308 (507)
T ss_pred CCCCeEEEEC--CCCccchHH----HHHHHHHHHh---h-c--CEEEEEECCChH-HHHHHHHHHHHHcCCCcccceEEE
Confidence 0125667765 666554321 1223332211 1 3 456777777832 111122344455554433 25556
Q ss_pred Ee--eeeee-CCcccccccCCccCHHHHHHh-cCc----------------hhHHHHHhhcCCCCccCCCHHHHHHHHH-
Q 012397 272 HN--GHVTN-NNEKMSKSLGNFFTIRQITER-YHP----------------LALRHFLISAHYRSPLNYSVLQLDSASD- 330 (464)
Q Consensus 272 ~~--~~v~~-~G~KmSks~gn~i~~~dll~~-~~~----------------dalR~~ll~~~~~~~~~f~~~~~~~~~~- 330 (464)
|. |++.. +|+|||||+||+|+|+|++++ +|. ||+||++++.++.+++.|+++.+.+..+
T Consensus 309 h~~~glv~~~~g~KMSkR~Gn~i~l~dll~~a~g~~~~~~~~~~~a~~vgidAiR~~~L~~~~~~~~~Fd~~~~~~~~~~ 388 (507)
T PRK01611 309 HQMVGLVRGGEGVKMSTRAGNVVTLDDLLDEAVGRARELIEEKEIAEAVGIDAVRYFDLSRSRDKDLDFDLDLALSFEGN 388 (507)
T ss_pred EEEEEeeECCCCCcccCCCCceeEHHHHHHHHHHHHHHHHHhhhhhhhhccceeEehhhhcCCCCCCccCHHHHHhhcCC
Confidence 64 44554 788999999999999999999 898 9999999999999999999999887754
Q ss_pred HHHHHHHHHHHHHHhcCccccCC-------CccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhh
Q 012397 331 AVFYIYQTLQDCEVALSPFQEHG-------KTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLN 403 (464)
Q Consensus 331 ~l~~l~~~~~~~~~~l~~~~~~~-------~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~ 403 (464)
+..+++|+++|+++++++..... ..++.|++|+.+|.++++.+.+++ ++++++.++.. |++|++.+|+||+
T Consensus 389 ~~~yvqYa~aR~~sil~k~~~~~~~~~~~~l~~~~e~~Ll~~L~~~~~~v~~a~-~~~~p~~l~~y-l~~la~~f~~fY~ 466 (507)
T PRK01611 389 NPPYVQYAHARICSILRKAAEAGIDLLLALLTEEEEKELIKKLAEFPEVVESAA-EELEPHRIANY-LYELAGAFHSFYN 466 (507)
T ss_pred CcHHHHHHHHHHHHHHHhhhccCccccccccCCHHHHHHHHHHHHHHHHHHHHH-HhCCcHHHHHH-HHHHHHHHHHHHH
Confidence 23399999999999987753211 114568999999999999999999 88876555555 9999999999999
Q ss_pred hhcccCch-h-hhhhHHHHHHHHHHHHHHHHHhhccCCC
Q 012397 404 MLKKKQPK-Q-QQLSLIESLRKIENEVKEVLRILGLLPP 440 (464)
Q Consensus 404 ~~~~~~~~-~-~~~~r~~~~~~~~~~l~~~l~lLgi~p~ 440 (464)
.|+ .... . ....|+.++.++..+|++++.||||.|+
T Consensus 467 ~~~-l~~~~~~~~~~Rl~L~~a~~~vl~~~l~lLgi~~~ 504 (507)
T PRK01611 467 RVL-LKDEEEELRNARLALVKATAQVLKNGLDLLGISAP 504 (507)
T ss_pred HCC-CCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 886 4322 2 3478999999999999999999999886
No 32
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3e-47 Score=424.21 Aligned_cols=419 Identities=19% Similarity=0.229 Sum_probs=305.2
Q ss_pred CcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHH-cCCC---------------
Q 012397 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRAND-LGEN--------------- 101 (464)
Q Consensus 38 ~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~-~g~~--------------- 101 (464)
++-.++.++|++||.|||||+++.++.|+++|+.|++|++|.+..|+|.||.+|+..+++ .|++
T Consensus 41 ~~f~i~~~PPy~nG~lH~GH~l~~t~kD~i~Ry~rm~G~~v~~~~GwD~~GlPie~~vek~l~~~~~~~i~~~g~~~f~~ 120 (975)
T PRK06039 41 PEFVFYDGPPTANGLPHYGHLLTRTIKDVVPRYKTMKGYKVERRAGWDTHGLPVELEVEKELGISGKKDIEEYGIEKFNE 120 (975)
T ss_pred CCEEEeCCCCCCCCCccHhhhHhhHHHHHHHHHHHhCCCcccCcCCcCCCccHHHHHHHHHhCcccccchhhcCHHHHHH
Confidence 345677778899999999999999999999999999999999999999999999999976 4654
Q ss_pred -hHHHHHHHHHHHHHHHHhcCCCCC-CC--CCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCCCC-------C--C
Q 012397 102 -PLSLSNRYCQEYLVDMADLQCLPP-TY--QPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSP-------N--Y 168 (464)
Q Consensus 102 -~~~~~~~~~~~~~~~l~~lgi~~~-~~--~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~-------~--~ 168 (464)
+++++++|.+.+.+.+++||++.+ +. ++....+.+.++..|.+|+++|++|++...++||+.|.. . |
T Consensus 121 ~c~~~~~~~~~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kGliyr~~~~v~wcp~~~T~Ls~~Ev~~~y 200 (975)
T PRK06039 121 KCRESVLRYTDEWEEYTERLGRWVDFDNPYKTLDNEYMESVWWALKQLYDKGLLYKGYRVVPYCPRCETPLSNHEVAQGY 200 (975)
T ss_pred HHHHHHHHHHHHHHHHHHHhCceeecCCCcCcCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCCCCCCccHHHHhhcc
Confidence 789999999999999999998742 11 222237889999999999999999999999999988510 0 0
Q ss_pred ----CC-------C--------------------------CCcc----------c------------------------c
Q 012397 169 ----GR-------L--------------------------SGQR----------L------------------------E 177 (464)
Q Consensus 169 ----g~-------l--------------------------~~~~----------~------------------------~ 177 (464)
+. + .+.. . .
T Consensus 201 ~~~~~~~~~v~f~l~~~~~~~l~i~TTrP~Tl~~n~avaV~P~~~Y~~~~~~~~~yi~a~~~~~~~~~~~~~~~~~~~G~ 280 (975)
T PRK06039 201 KDVKDPSVYVKFKLKGEENEYLLAWTTTPWTLPSNLALAVHPDIDYVKVEGGGEVYILAEALLEKVLKEDYEVVETFKGS 280 (975)
T ss_pred cccCCceEEEEEEecCCCCCEEEEEECCccccccceEEEECCCCceEEEecCCeEEEEhHHHHHHHhhcccEEEeeecCc
Confidence 00 0 0000 0 0
Q ss_pred ccccCCC----------------------cccCC--------cccCcccccc----------------------------
Q 012397 178 NNRAGER----------------------VAVDS--------RKRNPADFAL---------------------------- 199 (464)
Q Consensus 178 ~~~~g~~----------------------~~~~~--------~k~~~~d~~~---------------------------- 199 (464)
++ .|.+ |..+. .-+.+.||.+
T Consensus 281 ~L-~G~~~~~P~~~~~~~~~~~pii~~~~V~~~~GTG~V~~aPahg~~D~~~~~~~~l~~~~~id~~G~~~~~~~~~~G~ 359 (975)
T PRK06039 281 EL-EGLEYEPPFPYFADEKNAFRVVLADFVTTEDGTGIVHIAPAFGEDDFEVGKKYGLPVVCPVDDDGRFTEEVPDYAGK 359 (975)
T ss_pred cc-cCCEEECCcccccCCcceeEEEecCccCCCCCccceeeCCCCChHHHHHHHHcCCCccceeCCCceEcCCCccccCC
Confidence 00 0000 00000 0000001100
Q ss_pred --------------------------------ccc---------------------------------------------
Q 012397 200 --------------------------------WKA--------------------------------------------- 202 (464)
Q Consensus 200 --------------------------------w~~--------------------------------------------- 202 (464)
|+.
T Consensus 360 ~v~eA~~~Ii~~L~~~g~l~~~~~~~h~~p~c~R~g~pv~~~~~~qWFi~~~~~k~~ll~~~~~i~~~P~~~~~~~~~~w 439 (975)
T PRK06039 360 FVKDADKEIIRDLKERGLLFKAETYEHSYPHCWRCDTPLIYYATESWFIRVTKIKDRMLELNQKINWYPEHIKDGRFGKW 439 (975)
T ss_pred CHHHhhHHHHHHHHhCCCEeeeeeecCCCCEeCCCCCEEEEEecCeeeEecHHHHHHHHHhhCCeEEECcccchhhHHHH
Confidence 000
Q ss_pred ---ccCCCCcccCCCCCCCCchhhH-HH---------H-------------------------------H----------
Q 012397 203 ---AKAGEPSWDSPWGPGRPGWHIE-CS---------A-------------------------------M---------- 228 (464)
Q Consensus 203 ---~~~g~~~~~~~wg~~~P~w~~~-~~---------~-------------------------------~---------- 228 (464)
..+..++|+..||.++|.|+.. |. . +
T Consensus 440 l~~l~DW~ISRqr~WG~PIPiw~~~~~g~~~v~~~~~el~~~~g~~~~~~~l~~~~~d~~~~~~~~~~~~~r~~dVlDvW 519 (975)
T PRK06039 440 LENARDWNISRNRYWGTPLPIWRCEDCGRIDVIGSIEELEELFGEDVEPIDLHRPYVDEVTLPCPDGGTMRRVPDVIDVW 519 (975)
T ss_pred HhcCccceeeeccccCCcceEEEecCCCeEEEeccHHHHHHHhCCCcchhhhcccccccccccCCCCcceEeccccccce
Confidence 0112235566799999988642 10 0 0
Q ss_pred --------HH-hh-------c--CCCeeEEEecccCccccchHHHHHHhhccC-CCCccEEEEeeeeee-CCcccccccC
Q 012397 229 --------SA-HY-------L--SSKFDIHGGGIDLIFPHHENEIAQSCAACQ-DSNVSYWMHNGHVTN-NNEKMSKSLG 288 (464)
Q Consensus 229 --------~~-~~-------~--~~~~~i~~~G~D~~~~h~~~~~a~~~a~~~-~~~~~~~~~~~~v~~-~G~KmSks~g 288 (464)
+. .+ | .+|.|+++.|+|+++++.........++.+ .||.++++ ||+++. +|+|||||+|
T Consensus 520 FdSg~~p~a~~~~p~~~~~~f~~~~Pad~~~~G~Di~r~Wf~~l~~~~~~~~~~~pfk~v~~-hG~Vld~~G~KMSKSlG 598 (975)
T PRK06039 520 FDSGSMPYAQLHYPFENKEWFEKHFPADFIVEGIDQTRGWFYTLLALSTALFDRPPYKNVLV-HGHVLDEDGQKMSKSLG 598 (975)
T ss_pred eecCCccHHHhCCcccChhhhhccCCceEEEechhhHhhHHHHHHHHHHHhcCCCcccEEEE-eeeEECCCCCCcCCCCC
Confidence 00 00 1 137899999999776544332333333334 57778766 699997 9999999999
Q ss_pred CccCHHHHHHhcCchhHHHHHhhc-CCCCccCCCHHH-HHHHHHHHHHHHHHHHHHHHh--cCccccC------CCccCC
Q 012397 289 NFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQ-LDSASDAVFYIYQTLQDCEVA--LSPFQEH------GKTARI 358 (464)
Q Consensus 289 n~i~~~dll~~~~~dalR~~ll~~-~~~~~~~f~~~~-~~~~~~~l~~l~~~~~~~~~~--l~~~~~~------~~~~~~ 358 (464)
|+|+|.|++++||+|++|||+++. ++++|++|+++. +....+.+.+++|+++++..+ +..+... ...++.
T Consensus 599 NvIdP~dli~~yGaDalR~~lls~~~~~~D~~fs~~~~~~~~~~~l~kl~N~~~f~~~y~~~~~~~~~~~~~~~~~~~~~ 678 (975)
T PRK06039 599 NYVDPFEVFDKYGADALRWYLLSSSAPWEDLRFSEDGVREVVRKFLLTLWNVYSFFVLYANLDGFDYPPAEDEVDSLNEL 678 (975)
T ss_pred CcCCHHHHHHHhChHHHHHHHHhCCCCCCCceechhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccccccccccCCHH
Confidence 999999999999999999999998 569999999999 555677788899988776432 2221101 112456
Q ss_pred ChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHH-HHHhhhh--cccCchhhhhhHHHHHHHHHHHHHHHHHhh
Q 012397 359 NPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFI-NSSLNML--KKKQPKQQQLSLIESLRKIENEVKEVLRIL 435 (464)
Q Consensus 359 d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~-n~~~~~~--~~~~~~~~~~~r~~~~~~~~~~l~~~l~lL 435 (464)
|+|++.+++++++.+.++| ++|+++.|+.. |++|+..+ |.|++.. ++|...+ ...+..+..++.++|+.++.+|
T Consensus 679 D~wils~l~~li~~v~~a~-e~y~~~~A~~~-l~~f~~~lsn~Yi~~~k~r~w~~~~-~~~~~~a~~~L~~~L~~l~~lL 755 (975)
T PRK06039 679 DRWILSRLNSLVKEVTEAL-DNYDITKAARA-IRDFVDDLSNWYIRRSRRRFWKEED-DPDKLAAYATLYTVLETLSRLA 755 (975)
T ss_pred HHHHHHHHHHHHHHHHHHH-HccCHHHHHHH-HHHHHHHHHHHHHHHhhhhhccCCC-cHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999 99999999999 99999876 6677766 4587532 2345667788999999999999
Q ss_pred c-cCCCccHHHHHHHhh---hhHhHhcCCCC
Q 012397 436 G-LLPPGAYSEVKTAFL---VLLHVFFDDSP 462 (464)
Q Consensus 436 g-i~p~~~~e~i~~~l~---~~~~~~~~~~~ 462 (464)
+ |+|+ +||+||+.|+ ...++++++||
T Consensus 756 aPf~Pf-~aEei~~~L~~~~~~~sv~~~~~P 785 (975)
T PRK06039 756 APFTPF-IAEEIYQNLTREDAPESVHLADWP 785 (975)
T ss_pred HhhhHH-HHHHHHHhccccCCCCeeEecCCC
Confidence 9 9998 9999999998 45689999988
No 33
>PLN02882 aminoacyl-tRNA ligase
Probab=100.00 E-value=3.5e-47 Score=425.82 Aligned_cols=224 Identities=15% Similarity=0.147 Sum_probs=182.1
Q ss_pred CCeeEEEecccCccccchHHHHHHhhccC-CCCccEEEEeeeeee-CCcccccccCCccCHHHHHHhcCchhHHHHHhhc
Q 012397 235 SKFDIHGGGIDLIFPHHENEIAQSCAACQ-DSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 312 (464)
Q Consensus 235 ~~~~i~~~G~D~~~~h~~~~~a~~~a~~~-~~~~~~~~~~~~v~~-~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~ 312 (464)
+|.|+++.|+|++++|.....++..++.+ +||.++ ++|||++. +|+|||||+||+|+|.+++++||+|++|||++++
T Consensus 566 ~PaD~i~eG~Dq~RgWf~~ll~~s~~l~~~~pfk~V-ivhG~vlde~G~KMSKSlGNvIdP~evi~~YGADaLR~~Ll~s 644 (1159)
T PLN02882 566 FPADFVAEGLDQTRGWFYTLMVLSTALFDKPAFKNL-ICNGLVLAEDGKKMSKSLKNYPDPNEVIDKYGADALRLYLINS 644 (1159)
T ss_pred CCceEEEEecchhhhHHHHHHHHHHHhcCCCCccee-EEccEEECCCCCCcccCCCCCCCHHHHHHHhCcHHHHHHHHhC
Confidence 47999999999888654333444444445 466666 55799999 8999999999999999999999999999999987
Q ss_pred CC--CCccCCCHHHHHHHH-HHHHHHHHHHHHHHHhcCcc--------ccCC------CccCCChhHHHHHHHHHHHHHH
Q 012397 313 HY--RSPLNYSVLQLDSAS-DAVFYIYQTLQDCEVALSPF--------QEHG------KTARINPAAEDCINKLRDEFHA 375 (464)
Q Consensus 313 ~~--~~~~~f~~~~~~~~~-~~l~~l~~~~~~~~~~l~~~--------~~~~------~~~~~d~~l~~~l~~~~~~v~~ 375 (464)
+. ++|++|+++.+.+.. +.+..++|+++++...+... .+.. ...+.|+|++.+++++.+.+.+
T Consensus 645 ~~~~~~d~~fs~~~v~~~~~~~l~kl~Na~rfl~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~D~wIls~l~~li~~v~~ 724 (1159)
T PLN02882 645 PVVRAEPLRFKEEGVFGVVKDVFLPWYNAYRFLVQNAKRLEVEGGAPFVPLDLAKLQNSANVLDRWINSATQSLVKFVRE 724 (1159)
T ss_pred CcccCcCcccCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCccccccccccCCHHHHHHHHHHHHHHHHHHH
Confidence 43 688999999998765 46888899877766554321 1100 1135689999999999999999
Q ss_pred HHhcccChHHHHHHHHHHHHH-HHHHHhhhhcccCchh-hhhhHHHHHHHHHHHHHHHHHhhc-cCCCccHHHHHHHhhh
Q 012397 376 RMSDDLNTSHILTGAFQDALK-FINSSLNMLKKKQPKQ-QQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVKTAFLV 452 (464)
Q Consensus 376 ~~~~~~~~~~al~~yl~~l~~-~~n~~~~~~~~~~~~~-~~~~r~~~~~~~~~~l~~~l~lLg-i~p~~~~e~i~~~l~~ 452 (464)
+| ++|+++.|+.. |++|+. .+|+|++..++|...+ ..+.+..++.+++++|+.++.+|+ |+|+ +||+||++|+.
T Consensus 725 ~m-e~y~f~~A~~~-I~~Fv~~lsN~YIe~~Kprl~~~~~~~~~~~al~tL~~vL~~l~~LLaPfmPf-~aEeI~q~L~~ 801 (1159)
T PLN02882 725 EM-GAYRLYTVVPY-LVKFIDNLTNIYVRFNRKRLKGRTGEEDCRTALSTLYNVLLTSCKVMAPFTPF-FTEVLYQNLRK 801 (1159)
T ss_pred HH-HccCHHHHHHH-HHHHHHHHhHHHHHhCCHhhhCCCChHHHHHHHHHHHHHHHHHHHHhhchhhH-HHHHHHHHhcc
Confidence 99 99999999999 999997 5799999999975322 234567788999999999999999 9998 99999999975
Q ss_pred -----hHhHhcCCCC
Q 012397 453 -----LLHVFFDDSP 462 (464)
Q Consensus 453 -----~~~~~~~~~~ 462 (464)
..++|+++||
T Consensus 802 ~~~~~~~SVh~~~~P 816 (1159)
T PLN02882 802 VLPGSEESIHYCSFP 816 (1159)
T ss_pred ccCCCCCceeecCCC
Confidence 4689999998
No 34
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=100.00 E-value=3.1e-47 Score=422.24 Aligned_cols=213 Identities=17% Similarity=0.110 Sum_probs=180.3
Q ss_pred CCeeEEEecccCccccchHHHHHHhhccC-CCCccEEEEeeeeeeCCcccccccCCccCHHHHHHhcCchhHHHHHhhc-
Q 012397 235 SKFDIHGGGIDLIFPHHENEIAQSCAACQ-DSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA- 312 (464)
Q Consensus 235 ~~~~i~~~G~D~~~~h~~~~~a~~~a~~~-~~~~~~~~~~~~v~~~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~- 312 (464)
+|.|+|++|+|++++|+.+|.+...|... .++++.+++|||++++|+|||||+||+|+|.|+++.||+|++|||+++.
T Consensus 572 yP~D~~~~GkDii~~H~~~~i~~~~a~~~~~~~Pk~i~~~G~vl~~G~KMSKSlGNvI~p~d~i~~yGaDalRl~Ll~~~ 651 (938)
T TIGR00395 572 YPLDWRISGKDLIPNHLTFYIFHHVAIFPEKFWPRGIVVNGYVMLEGKKMSKSKGNVLTLEQAVEKFGADVARLYIADAA 651 (938)
T ss_pred CCceEEEEeeccccchHHHHHHHHHHcCCccccCcEEEEeceEEeCCccccCcCCCCCCHHHHHHHcChHHHHHHHHhcC
Confidence 48999999999999999999887777654 3555666889999999999999999999999999999999999999987
Q ss_pred CCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCccCCChhHHHHHHHHHHHHHHHHhcccChHHHH-HHHH
Q 012397 313 HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHIL-TGAF 391 (464)
Q Consensus 313 ~~~~~~~f~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al-~~yl 391 (464)
++++|++|+++.+.+..+.+.++++++.++...... ..+...+..|+|++.+++++++++.++| ++++++.|+ .. +
T Consensus 652 ~~~~D~~fs~~~~~~~~~~l~~l~n~~~~~~~~~~~-~~~~~~~~~D~wlls~l~~~i~~v~~a~-e~~~~~~Al~~~-l 728 (938)
T TIGR00395 652 ETVQDADWKESEVEGTILRLERLYEFAEEITKESNL-ETGEETSFIDRWLESRMNAAIKETYEAM-ENFQTRKAVKYA-L 728 (938)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhhccc-CCCccCChHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHH-H
Confidence 899999999999999999999999998876543221 0011124568999999999999999999 899999999 66 9
Q ss_pred HHHHHHHHHHhhhhcccCchhhhhhHHHHHHHHHHHHHHHHHhhc-cCCCccHHHHHHHhhhhHhHhcCCCC
Q 012397 392 QDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVKTAFLVLLHVFFDDSP 462 (464)
Q Consensus 392 ~~l~~~~n~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~l~lLg-i~p~~~~e~i~~~l~~~~~~~~~~~~ 462 (464)
+++++.+|.|+...+. ++ ...+.++|+.++.+|+ |+|+ +||+||+.|+..-+++++.||
T Consensus 729 ~~~~~~~n~Yl~~~~~---------~~--~~~l~~~l~~~~~LLaP~~P~-~aEeiw~~Lg~~~sv~~~~wP 788 (938)
T TIGR00395 729 FDLQADVDWYRRRGGV---------NH--KDVLARYLETWIKLLAPFAPH-FAEEMWEEVGNEGFVSLAKFP 788 (938)
T ss_pred HHHHHHHHHHHHhCcc---------hH--HHHHHHHHHHHHHHhcCcccH-HHHHHHHHcCCCCeEEecCCC
Confidence 9999999988764321 11 1357899999999999 9999 999999999866678888888
No 35
>PLN02381 valyl-tRNA synthetase
Probab=100.00 E-value=1.3e-46 Score=418.93 Aligned_cols=421 Identities=15% Similarity=0.142 Sum_probs=309.3
Q ss_pred CcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHH-----cCCC-----------
Q 012397 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRAND-----LGEN----------- 101 (464)
Q Consensus 38 ~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~-----~g~~----------- 101 (464)
++..|..++|+++|.|||||++++++.|+++|+.|++|++|.|+.|+|+||.+++..+++ .|.+
T Consensus 128 ~~f~i~~ppPy~nG~lHiGHa~~~ti~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~~~~~~~~~~~re~f~~ 207 (1066)
T PLN02381 128 PPFVIVLPPPNVTGALHIGHALTAAIEDTIIRWKRMSGYNALWVPGVDHAGIATQVVVEKKLMRERHLTRHDIGREEFVS 207 (1066)
T ss_pred CcEEEEeCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCcChHHHHHHHHhHhhcCCChhhCCHHHHHH
Confidence 345677778888999999999999999999999999999999999999999999877754 2543
Q ss_pred -hHHHHHHHHHHHHHHHHhcCCCCCC---CCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCCC------------
Q 012397 102 -PLSLSNRYCQEYLVDMADLQCLPPT---YQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS------------ 165 (464)
Q Consensus 102 -~~~~~~~~~~~~~~~l~~lgi~~~~---~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~------------ 165 (464)
+++++++|.+.+.+.+++||++.+- .++...++.+.++.+|.+|+++|+||++...++||+.|-
T Consensus 208 ~~~~~~~~~~~~~~~q~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~L~~~GlIyr~~~~VnWcP~~~TaLSd~EVey~d 287 (1066)
T PLN02381 208 EVWKWKDEYGGTILNQLRRLGASLDWSRECFTMDEQRSKAVTEAFVRLYKEGLIYRDIRLVNWDCTLRTAISDVEVDYID 287 (1066)
T ss_pred HHHHHHHHHHHHHHHHHHHhCchhccCCccccCCHHHHHHHHHHHHHHHHCCCEEeccccccCCCCCCCCccHHHhhhhc
Confidence 4689999999999999999998531 233333788999999999999999999999999987741
Q ss_pred ---------CCC------CC-------CCC--c-------ccc------------------cc----------------c
Q 012397 166 ---------PNY------GR-------LSG--Q-------RLE------------------NN----------------R 180 (464)
Q Consensus 166 ---------~~~------g~-------l~~--~-------~~~------------------~~----------------~ 180 (464)
+.+ |. +.+ . .++ ++ .
T Consensus 288 ~~~~s~~~~~~~~~~~~~g~~~~~~Y~l~~~~~~i~vATtRpEti~g~~avaV~P~d~ry~~L~G~~~~~Pl~~~~ipIi 367 (1066)
T PLN02381 288 IKERTLLKVPGYDKPVEFGVLTSFAYPLEGGLGEIVVATTRIETMLGDTAIAIHPDDERYKHLHGKFAVHPFNGRKLPII 367 (1066)
T ss_pred cccchhhcccCCCcceeeEEEEEEEEEecCCCCEEEEecCCHHHHhcccceeeCCCCcchhhhCCCEEECCCCCCEEEEE
Confidence 000 10 000 0 000 00 0
Q ss_pred c-CCCcccCC--------cccCcccccc----------------------------------------------------
Q 012397 181 A-GERVAVDS--------RKRNPADFAL---------------------------------------------------- 199 (464)
Q Consensus 181 ~-g~~~~~~~--------~k~~~~d~~~---------------------------------------------------- 199 (464)
. ...|+.+. .-+.+.||.+
T Consensus 368 ~d~~~Vd~e~GTG~V~i~PaHd~~Dy~~~~~~~L~~i~~id~~G~~~~~~~~~~~Gl~~~eAr~~Ii~~L~~~g~l~~~~ 447 (1066)
T PLN02381 368 CDAILVDPNFGTGAVKITPAHDPNDFEVGKRHNLEFINIFTDDGKINSNGGSEFAGMPRFAAREAVIEALQKKGLYRGAK 447 (1066)
T ss_pred ECCccccccCCCCcEEecCCCChHHHHHHHHcCCCeeeeeCCCceeCCCCccccCCCCHHHHHHHHHHHHHhCCCEecce
Confidence 0 00000000 0000001100
Q ss_pred ---------ccc----------------------------------------------------ccCCCCcccCCCCCCC
Q 012397 200 ---------WKA----------------------------------------------------AKAGEPSWDSPWGPGR 218 (464)
Q Consensus 200 ---------w~~----------------------------------------------------~~~g~~~~~~~wg~~~ 218 (464)
|+. ..+..++|+..||.++
T Consensus 448 ~~~h~~p~c~R~~~~ie~~~~~QWFi~~~~l~~~al~av~~~~~~~i~~~P~~~~~~~~~wl~n~~DWcISRQr~WG~pI 527 (1066)
T PLN02381 448 NNEMRLGLCSRTNDVVEPMIKPQWFVNCSSMAKQALDAAIDGENKKLEFIPKQYLAEWKRWLENIRDWCISRQLWWGHRI 527 (1066)
T ss_pred eeecCCCeeCCCCceEEEeecccceEEchHHHHHHHHHHhhccCCceEEEChHHHHHHHHHHhcCccceeeeecccCCcc
Confidence 000 0112235566899999
Q ss_pred CchhhHH-----------------H------------H-------HHHh----------------hcC-----------C
Q 012397 219 PGWHIEC-----------------S------------A-------MSAH----------------YLS-----------S 235 (464)
Q Consensus 219 P~w~~~~-----------------~------------~-------~~~~----------------~~~-----------~ 235 (464)
|.|+... . . +... .+| .
T Consensus 528 Piw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rd~DVlDtWF~Sg~~p~~~lg~P~~~~~~~~~~ 607 (1066)
T PLN02381 528 PAWYVTLEDDQLKELGSYNDHWVVARNESDALLEASQKFPGKKFELSQDPDVLDTWFSSGLFPLSVLGWPDDTDDLKAFY 607 (1066)
T ss_pred ceEEeccChhhcccCCcccceEEEccchHhhcchhhcccCCCccceeecCceeeEEEeCCchHHHHhcCCCCHHHHhccC
Confidence 9997520 0 0 1000 012 3
Q ss_pred CeeEEEecccCccccchHHHHHHhhccC-CCCccEEEEeeeeee-CCcccccccCCccCHHHHHH---------------
Q 012397 236 KFDIHGGGIDLIFPHHENEIAQSCAACQ-DSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITE--------------- 298 (464)
Q Consensus 236 ~~~i~~~G~D~~~~h~~~~~a~~~a~~~-~~~~~~~~~~~~v~~-~G~KmSks~gn~i~~~dll~--------------- 298 (464)
|.|+.+.|.|++|++....+.+..++.+ .||.++++ ||+|+. +|+|||||+||+|+|.|+++
T Consensus 608 P~d~~~~G~Dii~~W~~rmi~~~~~~~~~~PFk~v~~-hG~V~D~~G~KMSKS~GNvIdP~~vi~~~~~~~l~~~~~~~~ 686 (1066)
T PLN02381 608 PTSVLETGHDILFFWVARMVMMGMQLGGDVPFRKVYL-HPMIRDAHGRKMSKSLGNVIDPLEVINGISLEGLHKRLEEGN 686 (1066)
T ss_pred CCeeeeecchhhhhHHHHHHHHHHHhCCCCchHHhee-cceEECCCCCCCCCCCCCCCCHHHHHhhcchhhHHHhhhccc
Confidence 7899999999887766544444444444 57788866 699998 99999999999999999999
Q ss_pred ----------------------hcCchhHHHHHhhc-CCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCc-cccC--
Q 012397 299 ----------------------RYHPLALRHFLISA-HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSP-FQEH-- 352 (464)
Q Consensus 299 ----------------------~~~~dalR~~ll~~-~~~~~~~f~~~~~~~~~~~l~~l~~~~~~~~~~l~~-~~~~-- 352 (464)
.||+||+|||+++. +.+++++|+.+.+...++.+.+|||+++++...+.. +...
T Consensus 687 ~~~~e~~~~~~~~~~~~p~gi~~yGADalR~~l~~~~~~~~di~~~~~~v~~~r~f~nKlwNa~rf~~~~~~~~~~~~~~ 766 (1066)
T PLN02381 687 LDPKELVVAKEGQKKDFPNGIAECGTDALRFALVSYTAQSDKINLDILRVVGYRQWCNKLWNAVRFAMSKLGDDYTPPAT 766 (1066)
T ss_pred cchhhhhhHhhhccccCCCCccccChHHHHHHHHcCCccccccCccHHHHHHHHHHHHHHHHHHHHHHhhcccccCcccc
Confidence 78999999999987 778999999999999999999999999887665532 1110
Q ss_pred ---CCccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHH--HHHHHHhhhhcccCchhh---hhhHHHHHHHH
Q 012397 353 ---GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDAL--KFINSSLNMLKKKQPKQQ---QLSLIESLRKI 424 (464)
Q Consensus 353 ---~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~--~~~n~~~~~~~~~~~~~~---~~~r~~~~~~~ 424 (464)
......|+|++.+|++++..+.++| ++|+++.|+.. +++|+ ..+|.|++..++|...+. ...|.....++
T Consensus 767 ~~~~~~~~~DrWILskL~~~i~~v~~~~-e~y~F~~A~~~-l~~F~~~dl~d~Yie~~K~~l~~~~~~~~~~r~~a~~~L 844 (1066)
T PLN02381 767 LSVETMPFSCKWILSVLNKAISKTVSSL-DAYEFSDAAST-VYSWWQYQFCDVFIEAIKPYFAGDNPEFASERAAAQDTL 844 (1066)
T ss_pred cCccccCHHHHHHHHHHHHHHHHHHHHH-HhCCHHHHHHH-HHHHHHHHhHHHHHHHhHHHHccCCccccHHHHHHHHHH
Confidence 1123578999999999999999999 99999999999 99995 568999999999643211 23455667789
Q ss_pred HHHHHHHHHhhc-cCCCccHHHHHHHhhh------hHhHhcCCCC
Q 012397 425 ENEVKEVLRILG-LLPPGAYSEVKTAFLV------LLHVFFDDSP 462 (464)
Q Consensus 425 ~~~l~~~l~lLg-i~p~~~~e~i~~~l~~------~~~~~~~~~~ 462 (464)
..+|..++.+|+ |+|+ +||+||+.|+. ..++++..+|
T Consensus 845 ~~vL~~llrLL~PfmPf-itEELw~~L~~~~~~~~~~SI~~~~~P 888 (1066)
T PLN02381 845 WICLDTGLRLLHPFMPF-VTEELWQRLPQPKDHTRKDSIMISEYP 888 (1066)
T ss_pred HHHHHHHHHHHHhHhHH-HHHHHHHHhhhhccCCCCCeeEeCCCC
Confidence 999999999999 9999 99999999963 2367888877
No 36
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=100.00 E-value=2.4e-48 Score=384.42 Aligned_cols=270 Identities=21% Similarity=0.222 Sum_probs=220.5
Q ss_pred ceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCC-------------ChHHHH
Q 012397 40 VGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGE-------------NPLSLS 106 (464)
Q Consensus 40 ~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~-------------~~~~~~ 106 (464)
..|..++|||||.+||||+++++++|+++|++|++|++|.+++|+|+||++|+.+|++.+. ++++++
T Consensus 2 ~~i~~~pP~~~g~~HiGH~~~~i~~D~i~R~~r~~G~~v~~~~g~D~~g~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 81 (312)
T cd00668 2 FYVTTPPPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERKGGRKKKTIWIEEFREDPKEFV 81 (312)
T ss_pred EEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCCCCCccCCCCHHHHHHHHHhcCcccccccHHHHHHHHHHHH
Confidence 3567778999999999999999999999999999999999999999999999999999887 899999
Q ss_pred HHHHHHHHHHHHhcCCCCC-CCCCCcc--hhHHHHHHHHHHHHHCCceEeecCcEEEcCCCCCCCCCCCCccccccccCC
Q 012397 107 NRYCQEYLVDMADLQCLPP-TYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGE 183 (464)
Q Consensus 107 ~~~~~~~~~~l~~lgi~~~-~~~~r~s--~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~~g~l~~~~~~~~~~g~ 183 (464)
++|.+.|.+++++|||+.+ +.+.++. +|.+.++++|.+|+++|++|++...++...+-+..++.+++..++.+..+.
T Consensus 82 ~~~~~~~~~~l~~lgI~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v~~~~~~f~~~~~l~~~~~~~~~~~~ 161 (312)
T cd00668 82 EEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVELIFSRLYEKGLIYRGTHPVRITEQWFFDMPKFKEKLLKALRRGK 161 (312)
T ss_pred HHHHHHHHHHHHHhCccccCCCCeECCCHHHHHHHHHHHHHHHHCCCEEeecceeEeeeeEEEEcHHHHHHHHHHHhcCC
Confidence 9999999999999999853 1333333 788999999999999999999988887776666667766654444443332
Q ss_pred CcccCCcc-------cCcccccccccccCCCCcccCCCCCCCCchhhHH----HH---HHHhhcC--------CCeeEEE
Q 012397 184 RVAVDSRK-------RNPADFALWKAAKAGEPSWDSPWGPGRPGWHIEC----SA---MSAHYLS--------SKFDIHG 241 (464)
Q Consensus 184 ~~~~~~~k-------~~~~d~~~w~~~~~g~~~~~~~wg~~~P~w~~~~----~~---~~~~~~~--------~~~~i~~ 241 (464)
+..+..+ .++.|+++ +|+.+||.++|+|+++| +. +...+.+ ++.|+|+
T Consensus 162 -~~p~~~~~~~~~~l~~~~d~~i---------sR~~~WG~~~P~~~i~~Wfds~~~~~~~~~~~~~~~~~~~~~~~di~~ 231 (312)
T cd00668 162 -IVPEHVKNRMEAWLESLLDWAI---------SRQRYWGTPLPEDVFDVWFDSGIGPLGSLGYPEEKEWFKDSYPADWHL 231 (312)
T ss_pred -cCChHHHHHHHHHHhCCCCeEE---------eccCCCCCcCCcccccchhhccHHHHHHcCCCccchhhhhcCCceEEE
Confidence 1111111 12234444 45679999999988877 21 1112222 2789999
Q ss_pred ecccCccccchHHHHHHhhccCC-CCccEEEEeeeeeeCC-cccccccCCccCHHHHHHhcCchhHHHHHhhc-CCCCcc
Q 012397 242 GGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTNNN-EKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPL 318 (464)
Q Consensus 242 ~G~D~~~~h~~~~~a~~~a~~~~-~~~~~~~~~~~v~~~G-~KmSks~gn~i~~~dll~~~~~dalR~~ll~~-~~~~~~ 318 (464)
+|+|++++|+.++++++.++++. ++.++++| ||++++| +|||||+||+|++.|+++++|+|++|||+++. ++++|.
T Consensus 232 ~G~D~~~~h~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~g~KmSKS~gn~v~~~d~~~~~~~da~R~~l~~~~~~~~d~ 310 (312)
T cd00668 232 IGKDILRGWANFWITMLVALFGEIPPKNLLVH-GFVLDEGGQKMSKSKGNVIDPSDVVEKYGADALRYYLTSLAPYGDDI 310 (312)
T ss_pred EecchhhhHHHHHHHHHHHhcCCCCcceeEEC-cEEEcCCCccccccCCCcCCHHHHHHHcCcHHHHHHHHhcCCccCCC
Confidence 99999999999999999998876 78888775 9999976 99999999999999999999999999999987 788888
Q ss_pred CC
Q 012397 319 NY 320 (464)
Q Consensus 319 ~f 320 (464)
+|
T Consensus 311 ~~ 312 (312)
T cd00668 311 RL 312 (312)
T ss_pred CC
Confidence 76
No 37
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=100.00 E-value=1.7e-46 Score=420.00 Aligned_cols=417 Identities=14% Similarity=0.129 Sum_probs=304.3
Q ss_pred CcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHH-----HHcCCC-----------
Q 012397 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRA-----NDLGEN----------- 101 (464)
Q Consensus 38 ~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a-----~~~g~~----------- 101 (464)
++..|..++|+++|.|||||+++++++|+++|+.|++|++|.|+.|+|+||.+++... .+.|.+
T Consensus 60 ~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Gl~~~~~vE~~l~~~~~~~~~~~~~e~f~~ 139 (995)
T PTZ00419 60 KKFVIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKGDETLWVPGTDHAGIATQVVVEKKLMKEENKTRHDLGREEFLK 139 (995)
T ss_pred CeEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCCchhhHHHHHHHHHHhcCCChHHcCHHHHHH
Confidence 4567777888999999999999999999999999999999999999999998774432 234544
Q ss_pred -hHHHHHHHHHHHHHHHHhcCCCCC-CC--CCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCCCC-----------
Q 012397 102 -PLSLSNRYCQEYLVDMADLQCLPP-TY--QPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSP----------- 166 (464)
Q Consensus 102 -~~~~~~~~~~~~~~~l~~lgi~~~-~~--~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~----------- 166 (464)
+++++++|.+.+.+.+++||++.+ +. ++...++.+.++++|.+|+++|++|++...++||+.|-.
T Consensus 140 ~~~~w~~~~~~~~~~~~~~lG~~~DW~~~~~T~d~~~~~~v~~~F~~l~~~Gliyr~~~~V~wcp~~~Talsd~EVe~~~ 219 (995)
T PTZ00419 140 KVWEWKDKHGNNICNQLRRLGSSLDWSREVFTMDEQRSKAVKEAFVRLYEDGLIYRDTRLVNWCCYLKTAISDIEVEFEE 219 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHhCceeeCCCCcCcCCHHHHHHHHHHHHHHHHCCCEEecceeeecCCCCCCCCchhhccccc
Confidence 468899999999999999999853 12 222237889999999999999999999999999987410
Q ss_pred ----------CC------CC-------CCC-cc--c-------c------------------cc----------------
Q 012397 167 ----------NY------GR-------LSG-QR--L-------E------------------NN---------------- 179 (464)
Q Consensus 167 ----------~~------g~-------l~~-~~--~-------~------------------~~---------------- 179 (464)
.+ |. +.+ .. + + ++
T Consensus 220 ~~~~~~~~~~~~~~~~~~g~l~~i~f~l~~~~~~~l~vaTTrPeTl~g~~avav~P~d~~y~~l~G~~~~~Pl~~~~~ip 299 (995)
T PTZ00419 220 IEKPTKITIPGYDKKVEVGVLWHFAYPLEDSGQEEIVVATTRIETMLGDVAVAVHPKDERYKKLHGKELIHPFIPDRKIP 299 (995)
T ss_pred ccccceeeccccccccccceeEEEEEeecCCCCcEEEEEeCCcchhhhCeEEEECCCCcHHHHhcCCEEECCccCCCEEE
Confidence 00 11 000 00 0 0 00
Q ss_pred -ccCC-CcccCC--------cccCcccccc--------------------------------------------------
Q 012397 180 -RAGE-RVAVDS--------RKRNPADFAL-------------------------------------------------- 199 (464)
Q Consensus 180 -~~g~-~~~~~~--------~k~~~~d~~~-------------------------------------------------- 199 (464)
..++ .|..+. .-+.+.||.+
T Consensus 300 ii~~~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~i~~~G~~~~~~~~~~Gl~~~~ar~~ii~~L~~~g~l~~~ 379 (995)
T PTZ00419 300 IIADDELVDMEFGTGAVKITPAHDPNDYEIAKRHNLPFINIFTLDGKINENGGEFAGMHRFDCRRKIEEELKEMGLLRDK 379 (995)
T ss_pred EEeCCcccCCCcCCCCeEeCCCCChHHHHHHHHcCCCeeeeeCCCceEcCCCcccCCCCHHHHHHHHHHHHHhcCCEEee
Confidence 0000 000000 0000111111
Q ss_pred ----------ccc-------------------------------------------------ccCCCCcccCCCCCCCCc
Q 012397 200 ----------WKA-------------------------------------------------AKAGEPSWDSPWGPGRPG 220 (464)
Q Consensus 200 ----------w~~-------------------------------------------------~~~g~~~~~~~wg~~~P~ 220 (464)
|+. .++..++|+..||.++|.
T Consensus 380 ~~~~~~~p~~~R~~~~ie~~~~~QWFi~~~~~~~~al~~v~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQr~WG~pIP~ 459 (995)
T PTZ00419 380 VPNPMRLPRCSRSGDIVEPMLIPQWYVNCKDMAKRAVEAVRNGELKIIPSSHENVWYHWLENIQDWCISRQLWWGHRIPA 459 (995)
T ss_pred EEeecCCCEeCCCCCEEEEEecCeeeEecHHHHHHHHHHhhcCCeEEEChHHHHHHHHHHhccccceeeeecccCceeeE
Confidence 000 011223556689999998
Q ss_pred hhhH-HH----------------------------------H-H--------------HH--hhcC-----------CCe
Q 012397 221 WHIE-CS----------------------------------A-M--------------SA--HYLS-----------SKF 237 (464)
Q Consensus 221 w~~~-~~----------------------------------~-~--------------~~--~~~~-----------~~~ 237 (464)
|+.. |. . + .+ ..+| +|.
T Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DVlDtWFdS~l~p~~~~g~p~~~~~~~~~~P~ 539 (995)
T PTZ00419 460 YRVISKGPETDPSDEEPWVVARSEEEALEKAKKKFGLSEEDFELEQDEDVLDTWFSSGLFPFSTLGWPDQTDDLQRFFPT 539 (995)
T ss_pred EEeCCCCccccCCCCceEEEcCCHHHHHhhhccccCCccccCCeEECCceEEEEEeCCHHHHHHhCCCCChHHHhhcCCC
Confidence 8431 00 0 0 00 0011 378
Q ss_pred eEEEecccCccccchHHHHHHhhc----cCC-CCccEEEEeeeeee-CCcccccccCCccCHHHHHH-------------
Q 012397 238 DIHGGGIDLIFPHHENEIAQSCAA----CQD-SNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITE------------- 298 (464)
Q Consensus 238 ~i~~~G~D~~~~h~~~~~a~~~a~----~~~-~~~~~~~~~~~v~~-~G~KmSks~gn~i~~~dll~------------- 298 (464)
|+++.|+|++++ |++++++. .+. ||..+++ ||+|+. +|+|||||+||+|+|.++++
T Consensus 540 d~~~~G~Dii~~----W~arm~~~~~~~~~~~Pfk~v~~-HG~v~d~~G~KMSKSlGNvIdP~~ii~~~~~~~l~~~~~~ 614 (995)
T PTZ00419 540 SLLETGSDILFF----WVARMVMMSLHLTDKLPFKTVFL-HAMVRDSQGEKMSKSKGNVIDPLEVIEGISLQDLNQKLYE 614 (995)
T ss_pred cEEEechhHHhH----HHHHHHHHHHHhcCCCChHHHhc-cceEECCCCCCcccCCCCcCChHHHhcccchhhHHHhhhc
Confidence 999999998775 55555433 344 5567755 699998 99999999999999999999
Q ss_pred ------------------------hcCchhHHHHHhhc-CCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCccccC-
Q 012397 299 ------------------------RYHPLALRHFLISA-HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEH- 352 (464)
Q Consensus 299 ------------------------~~~~dalR~~ll~~-~~~~~~~f~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~- 352 (464)
+||+|++|||+++. +.++|++|+.+.+...++.+.++||+++++.+.+.+....
T Consensus 615 ~~~~~~e~~~~~~~~~~~f~~gi~~yGaDalR~~l~~~~~~~~Di~~~~~~v~~~~~f~nklwN~~rf~~~~~~~~~~~~ 694 (995)
T PTZ00419 615 GNLPEKEIKRAIELQKKEFPNGIPECGTDALRFGLLAYTQQGRNINLDINRVVGYRHFCNKLWNAVKFALMKLLKDFNLP 694 (995)
T ss_pred cccchhhhhhHhhhhhccCCCCCcccCcHHHHHHHHhcCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 89999999999986 7899999999999988888999999999887766543211
Q ss_pred ----------CCccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHH--HHHHHHhhhhcccCc-hhhhhhHHH
Q 012397 353 ----------GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDAL--KFINSSLNMLKKKQP-KQQQLSLIE 419 (464)
Q Consensus 353 ----------~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~--~~~n~~~~~~~~~~~-~~~~~~r~~ 419 (464)
......|+|++.+++++++.+.++| ++|+++.|+.. +++|+ ..+|.|++..++|.. ....+.+..
T Consensus 695 ~~~~~~~~~~~~~~~~D~wIls~L~~~i~~v~~~~-e~y~f~~A~~~-i~~F~~~~~~n~Yie~~K~~l~~~~~~~~~~~ 772 (995)
T PTZ00419 695 NSTLFKPNNVESLPWEDKWILHRLNVAIKEVTEGF-KEYDFSEATQA-TYNFWLYELCDVYLELIKPRLSKQSDGERKQH 772 (995)
T ss_pred ccccccccccccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHH-HHHHHHHhhHHHHHHHhhhhhhcCCCcHHHHH
Confidence 0112458999999999999999999 99999999999 99974 568999999999752 122233556
Q ss_pred HHHHHHHHHHHHHHhhc-cCCCccHHHHHHHhhhh----HhHhcCCCC
Q 012397 420 SLRKIENEVKEVLRILG-LLPPGAYSEVKTAFLVL----LHVFFDDSP 462 (464)
Q Consensus 420 ~~~~~~~~l~~~l~lLg-i~p~~~~e~i~~~l~~~----~~~~~~~~~ 462 (464)
...++.++|+.++.+|+ |+|+ +||+||+.|+.. .++++..||
T Consensus 773 ~~~~L~~vL~~~l~LL~PfmPf-itEElw~~L~~~~~~~~si~~~~~P 819 (995)
T PTZ00419 773 AQDVLHTVLDIGLRLLHPMMPF-ITEELYQRLPNYLRKSESISIAKYP 819 (995)
T ss_pred HHHHHHHHHHHHHHHHhhhhhh-hHHHHHHhhhccCCCCCeeeccCCC
Confidence 77889999999999999 9999 999999999642 367777777
No 38
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=100.00 E-value=2.6e-47 Score=377.66 Aligned_cols=276 Identities=21% Similarity=0.220 Sum_probs=212.9
Q ss_pred eEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q 012397 41 GMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADL 120 (464)
Q Consensus 41 ~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l 120 (464)
.|..++|+|||++||||+|+.+++|+++|++|++|++|.+++|+||||++|+.+|+++|++|+++++.+.+.|.+++++|
T Consensus 3 ~it~~~Py~ng~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~L 82 (319)
T cd00814 3 LITTALPYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEEGVTPQELCDKYHEIFKDLFKWL 82 (319)
T ss_pred EEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence 45566677779999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcc--hhHHHHHHHHHHHHHCCceEeecCcEEEcCCCCCCCCCCC--Cc----------ccccccc-CCCc
Q 012397 121 QCLPPTYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLS--GQ----------RLENNRA-GERV 185 (464)
Q Consensus 121 gi~~~~~~~r~s--~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~~g~l~--~~----------~~~~~~~-g~~~ 185 (464)
||++ |.+.+++ .|.+.+++++++|.++|++|+++.+++||+.|......+. +. .+.+... +...
T Consensus 83 gI~~-D~~~~tt~~~~~~~v~~i~~~L~ekG~iY~~~~~~~yc~~~~~~l~e~~~~~~~ff~l~~~~~~l~~~~~~~~~~ 161 (319)
T cd00814 83 NISF-DYFIRTTSPRHKEIVQEFFKKLYENGYIYEGEYEGLYCVSCERFLPEWREEEHYFFRLSKFQDRLLEWLEKNPDF 161 (319)
T ss_pred CCcC-CCCeeCCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeECCCCCcEeeEEEeeeeEEEEhHHHHHHHHHHHHhCCcc
Confidence 9985 7787776 4888999999999999999999999999876422111100 00 0000000 0000
Q ss_pred ccCCcccCccccccccc--ccCCCCcccC-CCCCCCCc--------hhhHHHHHHH-------h-----h--cCCCeeEE
Q 012397 186 AVDSRKRNPADFALWKA--AKAGEPSWDS-PWGPGRPG--------WHIECSAMSA-------H-----Y--LSSKFDIH 240 (464)
Q Consensus 186 ~~~~~k~~~~d~~~w~~--~~~g~~~~~~-~wg~~~P~--------w~~~~~~~~~-------~-----~--~~~~~~i~ 240 (464)
.+..... ....-|.. ..+-.++|+. .||+++|. |+++...+.. + + -+++.++|
T Consensus 162 ~~p~~~~--~~~~~~l~~~l~d~~isR~~~~WGipvp~~~~~~~yvWfda~~~y~~~~~~~~~~~~~~~~~~~~~~~~v~ 239 (319)
T cd00814 162 IWPENAR--NEVLSWLKEGLKDLSITRDLFDWGIPVPLDPGKVIYVWFDALIGYISATGYYNEEWGNSWWWKDGWPELVH 239 (319)
T ss_pred CCCHHHH--HHHHHHHhCCCcccCCCccCcccCeeCCCCCCcEEEEehhhHHHHHHHcccccccccchhhhhcCCCceEE
Confidence 0000000 00001211 1233468888 99999984 8765432210 0 1 13478999
Q ss_pred EecccCccccchHHHHHHhhccCCCCccEEEEeeeeeeCCcccccccCCccCHHHHHHhcCchhHHHHHhhc-CCCCccC
Q 012397 241 GGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLN 319 (464)
Q Consensus 241 ~~G~D~~~~h~~~~~a~~~a~~~~~~~~~~~~~~~v~~~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~-~~~~~~~ 319 (464)
++|+|+++||+++|++++++++.++|..+ ++|||++++|+|||||+||+|+|.|+++.+|+|++|||+++. +..+|.+
T Consensus 240 ~~G~D~~~fh~~~~pa~l~~~~~~~~~~~-~~~~~~~~~g~kmSkS~gn~i~~~~~l~~~~~d~~R~~l~~~~~~~~d~~ 318 (319)
T cd00814 240 FIGKDIIRFHAIYWPAMLLGAGLPLPTRI-VAHGYLTVEGKKMSKSRGNVVDPDDLLERYGADALRYYLLRERPEGKDSD 318 (319)
T ss_pred EEeechhhhhHHHHHHHHHhCCCCCCcEe-eeeeeEEECCeeecccCCcccCHHHHHHHcCchHHHHHHHhcCCCCCCCC
Confidence 99999999999999999988876556665 668999999999999999999999999999999999999997 8889988
Q ss_pred C
Q 012397 320 Y 320 (464)
Q Consensus 320 f 320 (464)
|
T Consensus 319 f 319 (319)
T cd00814 319 F 319 (319)
T ss_pred C
Confidence 7
No 39
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=100.00 E-value=1.3e-45 Score=403.62 Aligned_cols=399 Identities=16% Similarity=0.136 Sum_probs=295.8
Q ss_pred cceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q 012397 39 KVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMA 118 (464)
Q Consensus 39 ~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~ 118 (464)
+..+...+|+|||.|||||+++++++|+++|++|++|++|.|+.|+|+||.+|+.+|.+.|++|.++++++.+.+.++++
T Consensus 33 ~~~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~~~ 112 (805)
T PRK00390 33 KYYVLDMFPYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKTGTHPAEWTYENIANMKKQLK 112 (805)
T ss_pred CEEEEccCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCcccccCccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 33333345777799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCC-CCCCCcc--hhHHHHHHHHHHHHHCCceEeecCcEEEcCCC-------------CCCCCCC-----------
Q 012397 119 DLQCLPP-TYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEK-------------SPNYGRL----------- 171 (464)
Q Consensus 119 ~lgi~~~-~~~~r~s--~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~-------------~~~~g~l----------- 171 (464)
+||++.+ +.+.+|. +|.+.++++|.+|+++|++|++...++||+.| |+.||..
T Consensus 113 ~lGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t~La~~ev~~~~~~~~~~~~~~~~~~~~f~ 192 (805)
T PRK00390 113 SLGFSYDWSREIATCDPEYYKWTQWIFLKLYEKGLAYRKESPVNWCPVDGTVLANEQVIDGRCWRCGAPVEKKELRQWFL 192 (805)
T ss_pred HhCCcccCCCCeecCCHHHHHHHHHHHHHHHHCCCEEEecCEEEecCCcCCCCCHHHhhCCeecccCCeeEEEecceeeE
Confidence 9999852 1334433 78999999999999999999999999999884 4455421
Q ss_pred --C--------------------------------Ccccc-ccc------------------------------------
Q 012397 172 --S--------------------------------GQRLE-NNR------------------------------------ 180 (464)
Q Consensus 172 --~--------------------------------~~~~~-~~~------------------------------------ 180 (464)
+ +..+. .+.
T Consensus 193 ~i~~~~~~L~~~l~~~~~w~~~v~~~~~~wig~~~~~~i~f~~~~~~~~l~v~TTrPeTl~g~~aiav~p~~~~~~~~~~ 272 (805)
T PRK00390 193 KITDYADELLDDLDKLEDWPEKVKTMQRNWIGRSEGAEVTFKVEDSDEKIEVFTTRPDTLFGATYLVLAPEHPLVEKLAE 272 (805)
T ss_pred ecchhHHHHHHHHHhhccCcHHHHHHHHhhccccceEEEEEEccCCCCEEEEEeCCchHhhcceEEEECCCChhHHhhhc
Confidence 0 00000 000
Q ss_pred -------------------------------cCCC-----------------cccCC--------cccCcccccccccc-
Q 012397 181 -------------------------------AGER-----------------VAVDS--------RKRNPADFALWKAA- 203 (464)
Q Consensus 181 -------------------------------~g~~-----------------~~~~~--------~k~~~~d~~~w~~~- 203 (464)
.|.. |..+. .-+.+.|+..++..
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~g~~~~~P~~~~~ipi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~ 352 (805)
T PRK00390 273 QNPAVAAFIEECKKKSDLERQTETKEKTGVFTGLYAIHPLTGEKIPVWIADYVLMDYGTGAVMAVPAHDQRDFEFAKKYG 352 (805)
T ss_pred chHHHHHHHHHHhhhcchhhhhcccceeeeecCcEEECCCCCCeeeEEEeccccCCCCCCeEEEcCCCCHHHHHHHHHcC
Confidence 0000 00000 00001122211100
Q ss_pred ---------------------------------------------------------------cCCCCcccCCCCCCCCc
Q 012397 204 ---------------------------------------------------------------KAGEPSWDSPWGPGRPG 220 (464)
Q Consensus 204 ---------------------------------------------------------------~~g~~~~~~~wg~~~P~ 220 (464)
++..++|+..||.++|.
T Consensus 353 L~~~~~i~~~g~~~~~~~~~~~~~g~~~~~~~~~Gl~~~~a~~~Ii~~L~~~g~~~~~v~~~l~DW~ISRQR~WG~PIPi 432 (805)
T PRK00390 353 LPIKPVIEPGDGDEDISEEAYTGDGVLINSGELDGLDSEEAKEAIIAWLEEKGLGKRKVNYRLRDWGISRQRYWGEPIPI 432 (805)
T ss_pred CCceeeeCCCCcccccccccccCCeEEEeccccCCCCHHHHHHHHHHHHHHcCCCCCceEEECCCccccccccCCCceeE
Confidence 01113556689999998
Q ss_pred hhh-HHHH------------------------------------------H-------------HHh---h-cC------
Q 012397 221 WHI-ECSA------------------------------------------M-------------SAH---Y-LS------ 234 (464)
Q Consensus 221 w~~-~~~~------------------------------------------~-------------~~~---~-~~------ 234 (464)
|+. +|.. + ++. + +.
T Consensus 433 ~~~~~~g~~~v~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~re~Dv~DtwfdSsw~~~~~~~p~~~~~~ 512 (805)
T PRK00390 433 IHCEDCGIVPVPEEDLPVVLPEDVVPDGTGSPLAKHPEWVNVTCPKCGKPARRETDTMDTFVGSSWYYLRYTDPHNDEAP 512 (805)
T ss_pred EEECCCCceeCchHhhhhhhhhhcccCCCCChhhhchhhhCCCccccCCCceeCCcccccccccccHHHHhcCcccccCc
Confidence 763 1100 0 000 0 00
Q ss_pred ---------CCeeEEEecccCccccchH---HHHHHhhc---cC-CCCccEEEEeeeeeeCCcccccccCCccCHHHHHH
Q 012397 235 ---------SKFDIHGGGIDLIFPHHEN---EIAQSCAA---CQ-DSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITE 298 (464)
Q Consensus 235 ---------~~~~i~~~G~D~~~~h~~~---~~a~~~a~---~~-~~~~~~~~~~~~v~~~G~KmSks~gn~i~~~dll~ 298 (464)
.|+|++++|.||+..|..+ |...+... .+ .|+.++ +||||| |||||+||+|+|.|+++
T Consensus 513 ~~~~~~~~~~P~Dly~~G~D~~i~hL~y~Rf~~~~l~~~~~~~~~~Pfk~v-~~~G~v-----KMSKS~GN~i~p~~~i~ 586 (805)
T PRK00390 513 FDKEAANYWLPVDQYIGGIEHAVLHLLYARFFTKVLRDLGLVSSDEPFKKL-LTQGMV-----KMSKSKGNVVDPDDIIE 586 (805)
T ss_pred CChHHhhCcCCCcEEeccHHHHHHHHHHHHHHHHHHHHhhcccCCcchhhh-eecCcE-----EeCCCCCCCCCHHHHHH
Confidence 3799999999976555432 22222222 23 466666 778999 99999999999999999
Q ss_pred hcCchhHHHHHhhc-CCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCccCCChhHHHHHHHHHHHHHHHH
Q 012397 299 RYHPLALRHFLISA-HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARM 377 (464)
Q Consensus 299 ~~~~dalR~~ll~~-~~~~~~~f~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~d~~l~~~l~~~~~~v~~~~ 377 (464)
+||+|++|||+++. +++++++|+.+.+.++.+.+.++++++++..+...... ......|+|++.++++++++++++|
T Consensus 587 ~ygaD~lRl~l~~~~~~~~d~~~s~~~l~~~~~~l~kl~~~~~~~~~~~~~~~--~~~~~~D~~il~~l~~~i~~v~~~~ 664 (805)
T PRK00390 587 KYGADTARLFEMFAGPPEKDLEWSDSGVEGAYRFLQRVWRLVVDAKGEAGALD--VAALSEDKELRRKLHKTIKKVTEDI 664 (805)
T ss_pred HcChHHHHHHHHhcCCccCCcccCHHHHHHHHHHHHHHHHHHHHhhhcccccC--cccChhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999985 89999999999999999999999999877433222111 1123578999999999999999999
Q ss_pred hcccChHHHHHHHHHHHHHHHHHHhhhhcccCchhhhhhHHHHHHHHHHHHHHHHHhhc-cCCCccHHHHHHHhhhhHhH
Q 012397 378 SDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVKTAFLVLLHV 456 (464)
Q Consensus 378 ~~~~~~~~al~~yl~~l~~~~n~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~l~lLg-i~p~~~~e~i~~~l~~~~~~ 456 (464)
++|+++.|++. |++|++.+++|++ .....++.++++.++.+|+ |+|+ +||+||+.|+...++
T Consensus 665 -e~~~f~~ai~~-l~~f~n~lsk~~~--------------~~~~~~l~~~l~~l~~lLaPf~P~-iaEElw~~L~~~~sv 727 (805)
T PRK00390 665 -ERLRFNTAIAA-LMELVNALYKAED--------------EQDKAVLREALEILVRLLAPFAPH-LAEELWEKLGHEGSI 727 (805)
T ss_pred -HcCCHHHHHHH-HHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHcCCCCee
Confidence 89999999999 9999999999982 1123477889999999999 9999 999999999765578
Q ss_pred hcCCCC
Q 012397 457 FFDDSP 462 (464)
Q Consensus 457 ~~~~~~ 462 (464)
++..||
T Consensus 728 ~~~~wP 733 (805)
T PRK00390 728 ANAPWP 733 (805)
T ss_pred EecCCC
Confidence 888887
No 40
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=100.00 E-value=6.8e-46 Score=406.45 Aligned_cols=401 Identities=16% Similarity=0.120 Sum_probs=296.6
Q ss_pred eEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q 012397 41 GMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADL 120 (464)
Q Consensus 41 ~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l 120 (464)
.+...+|+|||.|||||+++++++|+++|++|++|++|.|+.|+|+||.+++.+|.+.|+++.++++++.+.+.+.+++|
T Consensus 32 ~v~~~pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~~~~~~~~~~~l 111 (842)
T TIGR00396 32 YILDMFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDAFGLPAENAAIKRGIHPAKWTYENIANMKKQLQAL 111 (842)
T ss_pred EEEcCCCCCCCccccchhHHHHHHHHHHHHHHhcCCceeccCCcCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 33444678889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC-CCCCCcc--hhHHHHHHHHHHHHHCCceEeecCcEEEcCCC--------------CCCCCCCC-----------
Q 012397 121 QCLPP-TYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEK--------------SPNYGRLS----------- 172 (464)
Q Consensus 121 gi~~~-~~~~r~s--~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~--------------~~~~g~l~----------- 172 (464)
|++.+ +.+.+|. +|.+.++.+|.+|+++|++|++...++||+.| |..||.-.
T Consensus 112 G~~~Dw~~~~~T~d~~y~~~~~~~F~~L~~kGliy~~~~~v~wcp~~~t~La~~ev~~~g~~~~~g~~v~~~~~~~~f~~ 191 (842)
T TIGR00396 112 GFSYDWDREIATCDPEYYKWTQWIFLELFEKGLAYVKEADVNWCPNDGTVLANEQVDSDGRSWRGGTPVEKKELKQWFLK 191 (842)
T ss_pred CCcccCCCCcccCCHHHHHHHHHHHHHHHHCCCeEeeccceEEeCCCCCCccHHHHhhcCccccCCCcceEeecceeEEe
Confidence 99852 2344444 78899999999999999999999999999875 44444310
Q ss_pred ----------------------------------Ccc----cc----ccc------------------------------
Q 012397 173 ----------------------------------GQR----LE----NNR------------------------------ 180 (464)
Q Consensus 173 ----------------------------------~~~----~~----~~~------------------------------ 180 (464)
+.. +. .+.
T Consensus 192 i~~~~~~l~~~l~~~~~wp~~v~~~q~~wig~s~g~~i~f~~~~~~~~l~v~TTrP~Tl~g~~~iav~p~~~~~~~~~~~ 271 (842)
T TIGR00396 192 ITAYAEELLNDLEELDHWPESVKEMQRNWIGKSEGVEITFKIADHKEKIAVFTTRPDTIFGVTYLALAPEHPLVEKIAEN 271 (842)
T ss_pred hhhhHHHHHHHHhhhccccHHHHHHHHhcccccceEEEEEEcCCCCCEEEEEeCCcHHhhhccEEEECCCCHHHHhhhcc
Confidence 000 00 000
Q ss_pred ------------------------------cCCC-----------------cccCC--------cccCcccccccccc--
Q 012397 181 ------------------------------AGER-----------------VAVDS--------RKRNPADFALWKAA-- 203 (464)
Q Consensus 181 ------------------------------~g~~-----------------~~~~~--------~k~~~~d~~~w~~~-- 203 (464)
.|.. |..+. .-+.+.||..++..
T Consensus 272 ~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~P~~~~~ipi~~~~~V~~~~GTG~V~~~Pahd~~D~~~~~k~~L 351 (842)
T TIGR00396 272 NPKVAAFIKKILQKTTTERTKETKLKKGVFTGIKAIHPLTGEKIPIWVANYVLASYGTGAVMGVPAHDERDFEFAQKYKL 351 (842)
T ss_pred hHHHHHHHHHHhccCchhhhhhhcccccEecCCEEECCCCCCEeEEEEeCcccCCCCCCeEEEcCCCCHHHHHHHHHhCC
Confidence 0000 00000 00011222211100
Q ss_pred ------------------------------------------------------------cCCCCcccCCCCCCCCchhh
Q 012397 204 ------------------------------------------------------------KAGEPSWDSPWGPGRPGWHI 223 (464)
Q Consensus 204 ------------------------------------------------------------~~g~~~~~~~wg~~~P~w~~ 223 (464)
++..++|+..||.++|.|+.
T Consensus 352 ~i~~vi~~~~~~~~~~~~~~~G~~~~~~~~~Gl~~~~A~~~Ii~~L~~~g~~~~~v~yrlrDW~ISRQRyWG~PIPi~~~ 431 (842)
T TIGR00396 352 PIKVVIDPAGKNLKTQAFTEDGVLVNSGEFNGLNSSEAREAIIAMLEKEGKGKRKVNYRLRDWLFSRQRYWGEPIPIIHC 431 (842)
T ss_pred CcceeeCCcccccccccccCCceEecchhcCCCCHHHHHHHHHHHHHHcCCCCceEEeecccceeecccccCCceEEEEE
Confidence 01113456679999998863
Q ss_pred H-HHH-------------------------------------------H-------------HH----------------
Q 012397 224 E-CSA-------------------------------------------M-------------SA---------------- 230 (464)
Q Consensus 224 ~-~~~-------------------------------------------~-------------~~---------------- 230 (464)
. |.. + ++
T Consensus 432 ~~~g~~~v~~~~lp~~l~~~~~~~~~~~~pl~~~~~~~~~~cp~cg~~~~retDtmDtw~dSswy~~r~~~p~~~~~~~~ 511 (842)
T TIGR00396 432 EDGGAVPVPEEDLPVILPELVNYDPDGNSPLSRIQEWVNVTCPSCGKPALRETDTMDTFAGSSWYYLRYLDPKNTDQPFD 511 (842)
T ss_pred CCCCeEeCcchhcchhhhhhhhccCCCCCchhhhhhhhcCcCccCCCCcEeCCCCCCCcccCCHHHHHhhCCCCcCCCcC
Confidence 1 100 0 00
Q ss_pred -hhc--CCCeeEEEecccCccccchH---HHHHHhhc----cCCCCccEEEEeeeeee-----CCc--------------
Q 012397 231 -HYL--SSKFDIHGGGIDLIFPHHEN---EIAQSCAA----CQDSNVSYWMHNGHVTN-----NNE-------------- 281 (464)
Q Consensus 231 -~~~--~~~~~i~~~G~D~~~~h~~~---~~a~~~a~----~~~~~~~~~~~~~~v~~-----~G~-------------- 281 (464)
+.+ ..|+|++++|.||...|..+ |...+... +..|+.++ +.||||+. +|+
T Consensus 512 ~~~~~~~~PvD~yi~G~dhailHLlyaRf~~~~l~~~~~~~~~~Pfk~l-~~~G~Vl~~~~~~~G~~~~~~~~~~~~~~~ 590 (842)
T TIGR00396 512 KEKAEYWLPVDLYIGGAEHAILHLLYARFWHKFLYDIGYVSTKEPFKKL-INQGMVLGFYYPPNGKSPPDELTERDEKAK 590 (842)
T ss_pred hHHHhccCCCcEeeccHHHHHHHHHHHHHHHHHHHhccccCCCccHHHH-hccceEEeeeecCCCCccChhhhccccccc
Confidence 000 13799999999986555433 33233222 23467777 45799997 788
Q ss_pred -------------ccccccCCccCHHHHHHhcCchhHHHHHhhc-CCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 012397 282 -------------KMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALS 347 (464)
Q Consensus 282 -------------KmSks~gn~i~~~dll~~~~~dalR~~ll~~-~~~~~~~f~~~~~~~~~~~l~~l~~~~~~~~~~l~ 347 (464)
|||||+||+|+|.|++++||+|++|||+++. +++++++|+.+.+.++.+.+.+|++++.++.+.+.
T Consensus 591 ~~~~~~~~~~~~~KMSKS~GN~v~p~~ii~~ygaDalRl~~l~~~~~~~d~~~~~~~l~~~~~~l~kl~~~~~~~~~~~~ 670 (842)
T TIGR00396 591 DKSGGELVVVGYEKMSKSKGNGIDPQEIVKKHGADALRLYIMFMGPIAASLEWNDSGLEGARRFLDRVWNLFYNILGELD 670 (842)
T ss_pred cccCCcccccchhhhhhcCCCcCCHHHHHHHcCchHHHHHHHhcCCcCCCCccCHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999975 88999999999999999999999999987655543
Q ss_pred ccc--cCCCccCCChhHHHHHHHHHHHHHHHHhcccC-hHHHHHHHHHHHHHHHHHHhhhhcccCchhhhhhHHHHHHHH
Q 012397 348 PFQ--EHGKTARINPAAEDCINKLRDEFHARMSDDLN-TSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKI 424 (464)
Q Consensus 348 ~~~--~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~-~~~al~~yl~~l~~~~n~~~~~~~~~~~~~~~~~r~~~~~~~ 424 (464)
... ........|+|++.++++++++++++| +++. ++.|++. +++|++.++++.. + .++
T Consensus 671 ~~~~~~~~~l~~~d~~il~~l~~~i~~v~~~~-e~y~~fn~ai~~-l~~f~n~L~~~~~----------~-------~~l 731 (842)
T TIGR00396 671 GKTYLTPTILEEAQKELRRDVHKFLKKVTEDL-EKLESFNTAISA-MMILLNALYKAKK----------D-------ALY 731 (842)
T ss_pred ccccCCcccCCHHHHHHHHHHHHHHHHHHHHH-HhhhhHHHHHHH-HHHHHHHHHhhhh----------H-------HHH
Confidence 211 111124578999999999999999999 8878 9999999 9999987766421 0 257
Q ss_pred HHHHHHHHHhhc-cCCCccHHHHHHHhhhh-HhHhcCCCC
Q 012397 425 ENEVKEVLRILG-LLPPGAYSEVKTAFLVL-LHVFFDDSP 462 (464)
Q Consensus 425 ~~~l~~~l~lLg-i~p~~~~e~i~~~l~~~-~~~~~~~~~ 462 (464)
.++|..++.+|+ |+|+ +||+||+.|+.- .+++.+.||
T Consensus 732 ~~~l~~ll~lLaPf~Ph-iaEElW~~l~~~~~sv~~~~wP 770 (842)
T TIGR00396 732 LEYLKGFLTVLSPFAPH-LAEELWEKLGSEPFIIKQAKWP 770 (842)
T ss_pred HHHHHHHHHHHhhhhhH-HHHHHHHHhCCCCCeeecCCCC
Confidence 789999999999 9999 999999999743 368888888
No 41
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=100.00 E-value=1.8e-45 Score=407.95 Aligned_cols=222 Identities=18% Similarity=0.158 Sum_probs=178.6
Q ss_pred CCeeEEEecccCcc--ccchHHHHHHhhccCCCCccEEEEeeeeee-CCcccccccCCccCHHHHHHhcCchhHHHHHhh
Q 012397 235 SKFDIHGGGIDLIF--PHHENEIAQSCAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLIS 311 (464)
Q Consensus 235 ~~~~i~~~G~D~~~--~h~~~~~a~~~a~~~~~~~~~~~~~~~v~~-~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~ 311 (464)
+|+|++++|+||++ ||...+++... .+..||.++++ |||++. +|+|||||+||+|+|.|++++||+|++|||+++
T Consensus 563 ~P~d~~i~G~Di~r~Wf~~~~~~~~~~-~~~~P~k~v~~-hG~vl~~~G~KMSKSkGNvI~p~d~i~~yGaDalR~~ll~ 640 (861)
T TIGR00392 563 FPADFILEGSDQTRGWFYSSLAIGTAL-FGQAPYKNVIT-HGFTLDEKGRKMSKSLGNVVDPLKVINKYGADILRLYVAS 640 (861)
T ss_pred CCceEEEEecchhccHHHHHHHHHHHH-cCCCChHhhEe-cceEECCCCCCcCCCCCCCCCHHHHHHHcCHHHHHHHHHh
Confidence 37899999999999 44444554332 24467778766 699997 999999999999999999999999999999999
Q ss_pred cCCCCccCCCHHHHHHHHHHHH-HHHHHHHHHH--HhcCccccC------CCccCCChhHHHHHHHHHHHHHHHHhcccC
Q 012397 312 AHYRSPLNYSVLQLDSASDAVF-YIYQTLQDCE--VALSPFQEH------GKTARINPAAEDCINKLRDEFHARMSDDLN 382 (464)
Q Consensus 312 ~~~~~~~~f~~~~~~~~~~~l~-~l~~~~~~~~--~~l~~~~~~------~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~ 382 (464)
.++++|++|+++.+.+..+.+. .++|.++++. +.+.++... ....+.|++++.+++++.+.+.++| ++++
T Consensus 641 ~~~~~D~~fs~~~l~~~~~~~~n~l~N~~~~~~~~~~l~~~~~~~~~~~~~~l~~~d~~ll~~l~~~~~~v~~~~-e~~~ 719 (861)
T TIGR00392 641 SDPWEDLRFSDEILKQVVEKYRKIRWNTYRFLLTYANLDKFDPLFNSVAVEKFPEEDRWILSRLNSLVEEVNEAL-EKYN 719 (861)
T ss_pred CCCCCCceECHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccccccccCCHHHHHHHHHHHHHHHHHHHHH-Hhcc
Confidence 8899999999999988776444 4565776665 555543311 1124568999999999999999999 9999
Q ss_pred hHHHHHHHHHHHHHH--HHHHhhhhcc--cCchhhhhhHHHHHHHHHHHHHHHHHhhc-cCCCccHHHHHHHhhhh---H
Q 012397 383 TSHILTGAFQDALKF--INSSLNMLKK--KQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVKTAFLVL---L 454 (464)
Q Consensus 383 ~~~al~~yl~~l~~~--~n~~~~~~~~--~~~~~~~~~r~~~~~~~~~~l~~~l~lLg-i~p~~~~e~i~~~l~~~---~ 454 (464)
++.|+.. +++|+.. .|.|++..++ |...+....| ....+++.+++.++.+|. |+|+ +||+||+.|+.. .
T Consensus 720 ~~~a~~~-l~~f~~~~l~n~Yi~~~k~~lw~~~~~~~~~-~~~~~l~~~l~~l~~lL~P~~P~-~aeeiw~~L~~~~~~~ 796 (861)
T TIGR00392 720 FHKVLRA-LQDFIVEELSNWYIRIIRDRLYCEAKDNDKR-AAQTTLYYALLTLVRLLAPFLPH-TAEEIYQNLPGGEEEE 796 (861)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHhhHHhccCCCCHHHH-HHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHhccccCCCC
Confidence 9999999 9999875 7999998866 8754433334 566788899999999999 9999 999999999753 5
Q ss_pred hHhcCCCC
Q 012397 455 HVFFDDSP 462 (464)
Q Consensus 455 ~~~~~~~~ 462 (464)
+++++.||
T Consensus 797 si~~~~wP 804 (861)
T TIGR00392 797 SVHLNLWP 804 (861)
T ss_pred ceeccCCC
Confidence 68888887
No 42
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.1e-45 Score=409.57 Aligned_cols=222 Identities=17% Similarity=0.132 Sum_probs=182.5
Q ss_pred CCeeEEEecccCcc--ccchHHHHHHhhccC-CCCccEEEEeeeeee-CCcccccccCCccCHHHHHHhcCchhHHHHHh
Q 012397 235 SKFDIHGGGIDLIF--PHHENEIAQSCAACQ-DSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLI 310 (464)
Q Consensus 235 ~~~~i~~~G~D~~~--~h~~~~~a~~~a~~~-~~~~~~~~~~~~v~~-~G~KmSks~gn~i~~~dll~~~~~dalR~~ll 310 (464)
+|.|+++.|+|+++ ||.. ..+..++.+ .||.++++ |||++. +|+|||||+||+|+|.+++++||+|++|||++
T Consensus 582 ~PaD~~~eG~Di~rgWF~s~--ll~s~~~~~~~P~k~V~~-HG~vld~~G~KMSKSlGNvIdP~~ii~~yGaD~lRl~ll 658 (961)
T PRK13804 582 WPADLYLEGSDQHRGWFNSS--LLESCGTRGRAPYKAVLT-HGFTLDEKGEKMSKSLGNTVSPQDVIKQSGADILRLWVA 658 (961)
T ss_pred CCceEEEEEcccccHHHHHH--HHHHHHhcCCCChhhEEE-eccEECCCCCCccCCCCCcCCHHHHHHhcCHHHHHHHHH
Confidence 57899999999886 4442 233333334 46678876 599998 99999999999999999999999999999999
Q ss_pred hcCCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCccccCC------CccCCChhHHHHHHHHHHHHHHHHhcccChH
Q 012397 311 SAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHG------KTARINPAAEDCINKLRDEFHARMSDDLNTS 384 (464)
Q Consensus 311 ~~~~~~~~~f~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~------~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~ 384 (464)
+.++++|++|+++.+.+..+.+.+|+|+++++.+.+.++.... .....|+|++.+++++++.+.++| ++|+++
T Consensus 659 s~~~~~D~~fs~~~l~~~~~~~~kL~N~~rf~l~nl~~~~~~~~~~~~~~~~~~D~wil~~l~~~~~~v~~~~-e~y~f~ 737 (961)
T PRK13804 659 SVDYSDDQRIGKEILKQVSETYRKLRNTLRWLLGNLAHFDPGEDVVAYADLPELERYMLHRLNELDGLVREAY-DAYDFK 737 (961)
T ss_pred hCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhccccCCcccccCChhhcCHHHHHHHHHHHHHHHHHHHHH-HhcCHH
Confidence 8889999999999998888888899999988777766543221 123468999999999999999999 999999
Q ss_pred HHHHHHHHHHH-HH-HHHHhhhhcccC--chhhhhhHHHHHHHHHHHHHHHHHhhc-cCCCccHHHHHHHhhh--hHhHh
Q 012397 385 HILTGAFQDAL-KF-INSSLNMLKKKQ--PKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVKTAFLV--LLHVF 457 (464)
Q Consensus 385 ~al~~yl~~l~-~~-~n~~~~~~~~~~--~~~~~~~r~~~~~~~~~~l~~~l~lLg-i~p~~~~e~i~~~l~~--~~~~~ 457 (464)
+|+.. +++|+ .. .|.|++..++|. .......|..+..++..+++.++.+|+ |+|+ +||+||+.|+. ..+++
T Consensus 738 ~a~~~-l~~f~~~~lsn~Yle~~K~rl~~~~~~~~~r~~~~~vL~~il~~l~~lLaPi~P~-~aEeiw~~L~~~~~~sv~ 815 (961)
T PRK13804 738 RIYKA-LVNFVNVDLSAFYFDIRKDALYCDAPSSLRRRAAQTVFYEIFVRLTKWLAPILPF-TAEEAWLYRYPEEEVSVH 815 (961)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHhhHhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhh-hHHHHHHhcccCCCCceE
Confidence 99999 99999 44 699999988853 222334566677888999999999999 9999 99999999983 45788
Q ss_pred cCCCC
Q 012397 458 FDDSP 462 (464)
Q Consensus 458 ~~~~~ 462 (464)
+..||
T Consensus 816 l~~wP 820 (961)
T PRK13804 816 LEQFP 820 (961)
T ss_pred ecCCC
Confidence 88887
No 43
>PLN02843 isoleucyl-tRNA synthetase
Probab=100.00 E-value=1.6e-45 Score=408.25 Aligned_cols=224 Identities=21% Similarity=0.180 Sum_probs=186.0
Q ss_pred CCeeEEEecccCccccchHHHHHHhhccC-CCCccEEEEeeeeee-CCcccccccCCccCHHHHHH---------hcCch
Q 012397 235 SKFDIHGGGIDLIFPHHENEIAQSCAACQ-DSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITE---------RYHPL 303 (464)
Q Consensus 235 ~~~~i~~~G~D~~~~h~~~~~a~~~a~~~-~~~~~~~~~~~~v~~-~G~KmSks~gn~i~~~dll~---------~~~~d 303 (464)
+|.|+++.|+|++++|+........++.+ .||.++++| ||++. +|+|||||+||+|+|.++++ +||+|
T Consensus 563 ~PaDl~~eG~Di~rgWf~s~l~~~~~~~g~~Pfk~v~~H-G~vld~~G~KMSKSlGNvI~p~~vi~~~~~~~~~~~yGaD 641 (974)
T PLN02843 563 YPADLYLEGSDQHRGWFQSSLLTSVATKGKAPYKSVLTH-GFVLDEKGFKMSKSLGNVVDPRLVIEGGKNQKQEPAYGAD 641 (974)
T ss_pred CCceeeeeeccccchHHHHHHHHHHHhcCCCccceEEEe-ccEECCCCCCcCCCCCCcCCHHHHHhhccccccccccChH
Confidence 57899999999999665444444445544 477888775 89888 89999999999999999999 79999
Q ss_pred hHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCccccC-----CCccCCChhHHHHHHHHHHHHHHHHh
Q 012397 304 ALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEH-----GKTARINPAAEDCINKLRDEFHARMS 378 (464)
Q Consensus 304 alR~~ll~~~~~~~~~f~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~-----~~~~~~d~~l~~~l~~~~~~v~~~~~ 378 (464)
++|||+++.++++|++|+.+.+.+..+.+.+|+|+++++.+.+..+... ......|+|++.+++++.+++.++|
T Consensus 642 ~lR~~l~~~~~~~d~~~s~~~l~~~~~~~~kl~n~~rf~lgnl~~~~~~~~~~~~~~~~~D~wiLskL~~li~~v~~ay- 720 (974)
T PLN02843 642 VLRLWVASVDYTGDVLIGPQILKQMSDIYRKLRGTLRYLLGNLHDWKPDNAVPYEDLPSIDKYALFQLENVVNEIEESY- 720 (974)
T ss_pred HHHHHHHhcccCCCceeCHHHHHHHHHHHHHHHHHHHHHHhCccCCCcccccCccccCHHHHHHHHHHHHHHHHHHHHH-
Confidence 9999999889999999999999999999999999999887776554211 1123468999999999999999999
Q ss_pred cccChHHHHHHHHHHHH--HHHHHHhhhhcccCc--hhhhhhHHHHHHHHHHHHHHHHHhhc-cCCCccHHHHHHHhhh-
Q 012397 379 DDLNTSHILTGAFQDAL--KFINSSLNMLKKKQP--KQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVKTAFLV- 452 (464)
Q Consensus 379 ~~~~~~~al~~yl~~l~--~~~n~~~~~~~~~~~--~~~~~~r~~~~~~~~~~l~~~l~lLg-i~p~~~~e~i~~~l~~- 452 (464)
++|+++.|+.. +++|+ ..+|.|++..++|.. ......|..+..++..+++.++.+|+ |+|+ +||+||+.|+.
T Consensus 721 e~y~f~~A~~~-i~~f~~~dlsn~Yie~~Kprly~~~~~~~~r~~~qtvL~~iLe~l~~LLaPimPf-~aEEiw~~L~~~ 798 (974)
T PLN02843 721 DNYQFFKIFQI-LQRFTIVDLSNFYLDVAKDRLYVGGTTSFTRRSCQTVLAAHLLSLLRAIAPILPH-LAEDAWQNLPFQ 798 (974)
T ss_pred HccCHHHHHHH-HHHHHHHHHhHHHHHhcchhhhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHhcccc
Confidence 99999999999 99884 578999999999753 22334455566678889999999999 9999 99999999974
Q ss_pred -----hHhHhcCCCC
Q 012397 453 -----LLHVFFDDSP 462 (464)
Q Consensus 453 -----~~~~~~~~~~ 462 (464)
..+++++.+|
T Consensus 799 ~~~~~~~sv~~~~~P 813 (974)
T PLN02843 799 EDGSAAESVFEAGWP 813 (974)
T ss_pred ccCCCCCceEecCCC
Confidence 3578888887
No 44
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=100.00 E-value=1.6e-44 Score=402.95 Aligned_cols=213 Identities=14% Similarity=0.166 Sum_probs=175.1
Q ss_pred CCeeEEEecccCccccchHHHHHHhhccCC-CCccEEEEeeeeee-CCcccccccCCccCHHHHHHhcCchhHHHHHhhc
Q 012397 235 SKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 312 (464)
Q Consensus 235 ~~~~i~~~G~D~~~~h~~~~~a~~~a~~~~-~~~~~~~~~~~v~~-~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~ 312 (464)
.|.|+...|.|++++|.........++.++ |+.++++ |||++. +|+|||||+||+|+|.+++++||+|++|||+++.
T Consensus 672 fPaD~i~eG~Dq~rgWf~s~l~~s~~l~~~~PfK~Vlv-HG~Vld~dG~KMSKSlGNvIDP~evI~kYGADaLR~~Lls~ 750 (1205)
T PTZ00427 672 FPADFIAEGLDQTRGWFYTLLVISTLLFDKAPFKNLIC-NGLVLASDGKKMSKRLKNYPDPLYILDKYGADSLRLYLINS 750 (1205)
T ss_pred CCceEEEEecchhccHHHHHHHHHHHhcCCCCcceeEE-ccEEEcCCCCCcccCCCCCCCHHHHHHhcCCcHHHHHHHhc
Confidence 378999999999988887767777777665 6678765 699998 9999999999999999999999999999999986
Q ss_pred -C-CCCccCCCHHHHHH-HHHHHHHHHHHHHHHHHhcCcccc-------------CCCccCCChhHHHHHHHHHHHHHHH
Q 012397 313 -H-YRSPLNYSVLQLDS-ASDAVFYIYQTLQDCEVALSPFQE-------------HGKTARINPAAEDCINKLRDEFHAR 376 (464)
Q Consensus 313 -~-~~~~~~f~~~~~~~-~~~~l~~l~~~~~~~~~~l~~~~~-------------~~~~~~~d~~l~~~l~~~~~~v~~~ 376 (464)
. .++|++|+++.+.+ .++.+.++||+++++...+..+.. .......|+|++++++++++.+.++
T Consensus 751 ~~~~~~Dl~Fse~~v~e~~r~~l~klwN~~rF~~~~i~~~~~~~~~~f~~~~~~~~~~~~~~DrWILs~l~~li~~v~~~ 830 (1205)
T PTZ00427 751 VAVRAENLKFQEKGVNEVVKSFILPFYHSFRFFSQEVTRYECLNKKQFLFNTDYIYKNDNIMDQWIFSSVQSLTKSVHTE 830 (1205)
T ss_pred CCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccCCcCcccccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 4 47999999999875 455688999998877665542210 0112456899999999999999999
Q ss_pred HhcccChHHHHHHHHHHHHH-HHHHHhhhhcc--cCchhhhhhHHHHHHHHHHHHHHHHHhhc-cCCCccHHHHHHHhhh
Q 012397 377 MSDDLNTSHILTGAFQDALK-FINSSLNMLKK--KQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVKTAFLV 452 (464)
Q Consensus 377 ~~~~~~~~~al~~yl~~l~~-~~n~~~~~~~~--~~~~~~~~~r~~~~~~~~~~l~~~l~lLg-i~p~~~~e~i~~~l~~ 452 (464)
| ++|+++.|+.. |++|+. ..|+|++..+. |.... .+++..++.+++++|+.++.+|+ |+|+ +||+||+.|..
T Consensus 831 m-e~Y~f~~A~~~-i~~Fi~~lsnwYIe~~K~rl~~~~~-~~~~~~a~~tL~~vL~~~~~LLaPf~Pf-iaEeiyq~L~~ 906 (1205)
T PTZ00427 831 M-KAYKLYNVLPK-LLQFIENLTNWYIRLNRDRMRGSLG-EENCLQSLCTTYRTLHLFTVLMAPFTPF-ITEYIYQQLRR 906 (1205)
T ss_pred H-HccCHHHHHHH-HHHHHHHhccHHHHHcchhhccCCC-cHHHHHHHHHHHHHHHHHHHHccccchH-HHHHHHHHhhh
Confidence 9 99999999999 999998 45888886654 54211 23455678999999999999999 9998 99999999953
No 45
>KOG1247 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.7e-45 Score=352.20 Aligned_cols=420 Identities=15% Similarity=0.112 Sum_probs=322.7
Q ss_pred CCCcceEEEeCCCCC--CcCCccc-chhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHH
Q 012397 36 VRGKVGMYVCGVTAY--DLSHLGH-ARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQE 112 (464)
Q Consensus 36 ~~~~~~v~~~~P~p~--G~lHiGH-ar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~ 112 (464)
.+++..+++++..|| ..+|+|| ++..+.||++||+.+.+|++..|+||+|++|++++.+|.++|.+|+++|++|++.
T Consensus 10 ~~n~rnilitsalpyvnnvphlgNIIg~vlsAdV~Aryc~~r~~~~~yicGTDEYgtatetkaleeg~tP~elcdKyh~i 89 (567)
T KOG1247|consen 10 APNERNILITSALPYVNNVPHLGNIIGSVLSADVFARYCPLRGPNTLYICGTDEYGTATETKALEEGLTPQELCDKYHGI 89 (567)
T ss_pred CCCccceeeecccceecccccccceeeEEeehhhhcccccCCCCceEEeccccccchhhHHHHHHccCCHHHHHHhcchh
Confidence 367778888987777 9999999 6899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCCCCcc--hhHHHHHHHHHHHHHCCceEeecCcEEEcCCC------------CCCCCCC--CCc--
Q 012397 113 YLVDMADLQCLPPTYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEK------------SPNYGRL--SGQ-- 174 (464)
Q Consensus 113 ~~~~l~~lgi~~~~~~~r~s--~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~------------~~~~g~l--~~~-- 174 (464)
+.+.+++++|++ |.|.|++ .+.+.+|.+|.+|+++|+..+.+..+.||+.| ||.||.= .|.
T Consensus 90 hk~vy~Wf~Idf-D~fgrtTT~~qT~i~Q~iF~kl~~ng~~se~tv~qLyC~vc~~fladr~veg~cp~C~yd~ARGDqc 168 (567)
T KOG1247|consen 90 HKVVYDWFKIDF-DEFGRTTTKTQTEICQDIFSKLYDNGYLSEQTVKQLYCEVCDTFLADRFVEGKCPFCGYDDARGDQC 168 (567)
T ss_pred HHHHHHhhcccc-cccCcccCcchhHHHHHHhhchhhcCCcccceeeeEEehhhcccccchhhhccCCCCCCccccchhh
Confidence 999999999995 8888776 67789999999999999999888899999874 7766531 111
Q ss_pred ----------cccccc-----cCCCc--------ccCCc--------ccCcccccccccc-------------cCCCCcc
Q 012397 175 ----------RLENNR-----AGERV--------AVDSR--------KRNPADFALWKAA-------------KAGEPSW 210 (464)
Q Consensus 175 ----------~~~~~~-----~g~~~--------~~~~~--------k~~~~d~~~w~~~-------------~~g~~~~ 210 (464)
++...+ .+..+ +++.. ++.. ---.|... ++..+||
T Consensus 169 d~cG~l~N~~el~~pkc~ic~~~p~~~~t~h~Fl~L~kl~~~lee~~~~~~-~~~~WS~Na~~it~sWlk~gl~pRCiTR 247 (567)
T KOG1247|consen 169 DKCGKLVNAAELKIPKCKICQAGPVVRQTQHLFLSLDKLEPRLEEWLRRTL-VEGDWSQNAQNITRSWLKDGLKPRCITR 247 (567)
T ss_pred hhhhhhcCHHHhcCcchheeccCCeeeeeeEEEEEhHHhHHHHHHHHHhcc-ccCCCccchHHHHHHHHHcccccccccc
Confidence 111111 01110 00000 0000 00013211 2335689
Q ss_pred cCCCCCCCCc----------hhhHH----------HHHHHhhcCCCe---eEEEecccCccccchHHHHHHhhccCC-CC
Q 012397 211 DSPWGPGRPG----------WHIEC----------SAMSAHYLSSKF---DIHGGGIDLIFPHHENEIAQSCAACQD-SN 266 (464)
Q Consensus 211 ~~~wg~~~P~----------w~~~~----------~~~~~~~~~~~~---~i~~~G~D~~~~h~~~~~a~~~a~~~~-~~ 266 (464)
+..||.++|- ||++. ..-+.++|..|- -+++.|||++.||.+..|+.+.+.+.+ +.
T Consensus 248 DLkWGtpVPle~fk~KVfYVWFDA~IGYlsit~~yt~ew~kWwknpE~v~LyqFmgKDNVpFHtviFP~s~lgt~en~t~ 327 (567)
T KOG1247|consen 248 DLKWGTPVPLEKFKDKVFYVWFDAPIGYLSITKNYTDEWEKWWKNPENVELYQFMGKDNVPFHTVIFPCSQLGTEENYTV 327 (567)
T ss_pred ccccCCCcChhhhcccEEEEEEcCcceEEEeehhhhHHHHHHhcCHhhhhHHHHhccCCCcceeeecchhhhcCCCCchh
Confidence 9999999992 87653 122345566554 378999999999999999988766543 33
Q ss_pred ccEEEEeeeeeeCCcccccccCCccCHHHHHH-hcCchhHHHHHhhc-CCCCccCCCHHHHHHHHHH--HHHHHHHHHHH
Q 012397 267 VSYWMHNGHVTNNNEKMSKSLGNFFTIRQITE-RYHPLALRHFLISA-HYRSPLNYSVLQLDSASDA--VFYIYQTLQDC 342 (464)
Q Consensus 267 ~~~~~~~~~v~~~G~KmSks~gn~i~~~dll~-~~~~dalR~~ll~~-~~~~~~~f~~~~~~~~~~~--l~~l~~~~~~~ 342 (464)
.+.+...+++..+..|||||+|..|.-.++.+ ..+++..||||++. |..+|..|+|+.+....|+ +.||-|++.|+
T Consensus 328 v~~l~aTeYLnyE~gKFSKSrgvGvFG~~aqd~gi~~~vWRyYLl~~RPEssDs~Fsw~df~~k~nseLl~NLGNFvNR~ 407 (567)
T KOG1247|consen 328 VHHLSATEYLNYEDGKFSKSRGVGVFGNDAQDTGIPASVWRYYLLYIRPESSDSAFSWDDFVLKVNSELLNNLGNFVNRV 407 (567)
T ss_pred heeechhhhhccccCcccccccccccccccccCCCCHHHHHHHHhhccCcccCCcCcHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33334457888899999999999999888876 58999999999997 8899999999999977664 55666666666
Q ss_pred HHhcCccccCC----CccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhcccCchhhhhhHH
Q 012397 343 EVALSPFQEHG----KTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLI 418 (464)
Q Consensus 343 ~~~l~~~~~~~----~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~~~~~~~~~~~~r~ 418 (464)
.+++.....+. ....-++.+++.++++..+..++| +....++++.. +|++++..|.|++.++.|+....+..|.
T Consensus 408 l~fv~~~~~g~Vp~~~~~~~~~~~~~dv~~~~~~y~~~m-e~vklr~~l~~-~m~is~~GNqylQ~~~~~k~~~~~r~r~ 485 (567)
T KOG1247|consen 408 LKFVAAKYNGVVPEMELTSGDKKLLEDVNELLAKYVAAM-EKVKLREALKT-AMEISRRGNQYLQENTDNKLYEESRQRA 485 (567)
T ss_pred HHHHHHhhCCcccceeecCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-HHHHHHhhhHHHhcccccchhhhccccc
Confidence 55543322221 224458899999999999999999 99999999999 9999999999999998877544333344
Q ss_pred HH-HHHHHHHHHHHHHhhc-cCCCccHHHHHHHhhhhHhHhcCC
Q 012397 419 ES-LRKIENEVKEVLRILG-LLPPGAYSEVKTAFLVLLHVFFDD 460 (464)
Q Consensus 419 ~~-~~~~~~~l~~~l~lLg-i~p~~~~e~i~~~l~~~~~~~~~~ 460 (464)
.. +...+.++.-+..||. +||. ++.+|.++|+.|....++.
T Consensus 486 ~~vi~~a~nii~lvs~ll~P~mP~-~s~~I~kqlnlp~~~~~~~ 528 (567)
T KOG1247|consen 486 GTVIGLAANIIYLVSVLLYPYMPT-TSAEILKQLNLPETLFPDR 528 (567)
T ss_pred ceeeehhhHHHHHHHHHhcccccc-chHHHHHHhCCccccCCCc
Confidence 43 5677888888999999 9999 9999999999997666553
No 46
>PLN02563 aminoacyl-tRNA ligase
Probab=100.00 E-value=2.1e-44 Score=395.54 Aligned_cols=399 Identities=13% Similarity=0.115 Sum_probs=290.4
Q ss_pred eEEEeCCCCCCc-CCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q 012397 41 GMYVCGVTAYDL-SHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMAD 119 (464)
Q Consensus 41 ~v~~~~P~p~G~-lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 119 (464)
.+....|.|||. |||||+++++++|+++|+.|++|++|+|+.|+|+||.+++.+|.+.|..|.++++++.+.+.+.+++
T Consensus 113 ~v~~~~PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G~~Vl~~~G~D~~GlPiE~~a~~~g~~p~~~~~~~i~~~~~q~~~ 192 (963)
T PLN02563 113 YVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLKNIARFRSQLKS 192 (963)
T ss_pred EEEeCCCCCCCcccchhhHHHHHHHHHHHHHHHhcCCeecccccccccCcHHHHHHHHcCCChHHhHHHHHHHHHHHHHH
Confidence 333356888896 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCC-CCCCCcc--hhHHHHHHHHHHHHHCCceEeecCcEEEcCCC-------------CCCCCCC------------
Q 012397 120 LQCLPP-TYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEK-------------SPNYGRL------------ 171 (464)
Q Consensus 120 lgi~~~-~~~~r~s--~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~-------------~~~~g~l------------ 171 (464)
||++++ +.+.+|+ +|.+.+|.+|.+|+++|++|++...++||+.| |..||..
T Consensus 193 lG~s~DW~r~~~T~dp~y~~~~q~~F~~L~~~GliY~~~~~v~wcp~~~T~La~~Ev~~~~~~~~~~~~~~~~~~q~f~~ 272 (963)
T PLN02563 193 LGFSYDWDREISTTEPEYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGLSERGGHPVIRKPMRQWMLK 272 (963)
T ss_pred hCcEeeCCCCeecCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeecCCcCCCCCHHHhhcCCCcCCCCceEEEecceeEEe
Confidence 999863 2344444 79999999999999999999999999999884 4445431
Q ss_pred -----------------------------------------CC-------cccc---------------------c----
Q 012397 172 -----------------------------------------SG-------QRLE---------------------N---- 178 (464)
Q Consensus 172 -----------------------------------------~~-------~~~~---------------------~---- 178 (464)
.+ ..+. .
T Consensus 273 it~ya~~L~~~l~~~~wp~~v~~~q~nwiG~s~g~~i~F~~~~~~~~~~~~~l~V~TTrPeTl~g~t~iav~p~~~yv~~ 352 (963)
T PLN02563 273 ITAYADRLLEDLDDLDWPESIKEMQRNWIGRSEGAELDFSVLDGEGKERDEKITVYTTRPDTLFGATYLVVAPEHPLLSS 352 (963)
T ss_pred cchhHHHHHHhhhhcCCCHHHHHHHHHhccccceEEEEEEecCccccCCCCEEEEEeCCChHHhhccEEEECCCChhhHh
Confidence 00 0000 0
Q ss_pred c------------c----------------------cCCCcc--c---------------CC--------cccCcccccc
Q 012397 179 N------------R----------------------AGERVA--V---------------DS--------RKRNPADFAL 199 (464)
Q Consensus 179 ~------------~----------------------~g~~~~--~---------------~~--------~k~~~~d~~~ 199 (464)
+ . .|..+. + +. .-+.++||..
T Consensus 353 ~~~~~~~~~v~~y~~~~~~~~~~~~~~~~~~k~g~~~g~~~~~P~~~~~iPI~~ad~V~~~~GTGaVm~~PaHd~~D~~~ 432 (963)
T PLN02563 353 LTTAEQKEAVEEYVDAASRKSDLERTELQKEKTGVFTGSYAINPATGEAIPIWVADYVLGSYGTGAIMAVPAHDTRDFEF 432 (963)
T ss_pred hhcccchHHHHHHHHHHhchhHHhhhhccceecccccCcEEeccCCCCeeEEEEecccCCCCCCCeEEEcCCCCHHHHHH
Confidence 0 0 000000 0 00 0000012211
Q ss_pred cccc--------------------------------------------------------------------cCCCCccc
Q 012397 200 WKAA--------------------------------------------------------------------KAGEPSWD 211 (464)
Q Consensus 200 w~~~--------------------------------------------------------------------~~g~~~~~ 211 (464)
++.. ++..++|+
T Consensus 433 a~k~~Lpi~~vI~~~d~~~~~~~~~y~~~G~l~ns~~~~~~~~Gl~~~eA~~~Ii~~L~~~g~~~~~v~y~lrDW~ISRQ 512 (963)
T PLN02563 433 AQKFDLPIKWVVKPADGNEDDAEKAYTGEGVIVNSSSSGLDINGLSSKEAAKKVIEWLEETGNGKKKVNYKLRDWLFARQ 512 (963)
T ss_pred HHHcCCCceeeeccCccccccccccccCceeEecCCCcccccCCcCHHHHHHHHHHHHHhCCCCCCeeEecCCCceEeee
Confidence 1000 01112345
Q ss_pred CCCCCCCCchhhH-HH------H---------H--------------------------------------------HH-
Q 012397 212 SPWGPGRPGWHIE-CS------A---------M--------------------------------------------SA- 230 (464)
Q Consensus 212 ~~wg~~~P~w~~~-~~------~---------~--------------------------------------------~~- 230 (464)
..||.++|.|+.. |. . + ++
T Consensus 513 RyWG~PIPi~~c~~cg~~v~v~e~~Lpv~lpe~~~~~~~~~g~~pl~~~~~~~~~~~p~cg~~~~RetDtmDtw~~Sswy 592 (963)
T PLN02563 513 RYWGEPIPVVFLEDSGEPVPVPESDLPLTLPELDDFTPTGTGEPPLAKAVSWVNTVDPSSGKPARRETNTMPQWAGSCWY 592 (963)
T ss_pred cccCCceEEEEEcCCCcEEecchHhCcccchhhhhcccCCCCCCchhcchhhhcCcCcCCCCCcEECCCcCCchhhccHH
Confidence 5799999987632 10 0 0 00
Q ss_pred --hh---------c-------CCCeeEEEecccCccccc---hHHHHHHhhcc----CCCCccEEEEeeeeee-------
Q 012397 231 --HY---------L-------SSKFDIHGGGIDLIFPHH---ENEIAQSCAAC----QDSNVSYWMHNGHVTN------- 278 (464)
Q Consensus 231 --~~---------~-------~~~~~i~~~G~D~~~~h~---~~~~a~~~a~~----~~~~~~~~~~~~~v~~------- 278 (464)
.+ + ..|+|++++|.||...|. .+|...+...+ ..|+.++ +.+|||+.
T Consensus 593 ~~r~~~p~~~~~~~~~~~~~~w~PvD~yigG~dhailHLlY~Rfw~~~l~~~g~~~~~ePfk~l-l~qGmVl~~~~~~~~ 671 (963)
T PLN02563 593 YLRFMDPKNSNALVDKEKEKYWMPVDLYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFQCL-VNQGMILGEVEYTAF 671 (963)
T ss_pred HHHHhCCCccccccCHHHHhCcCCCcEeeccHHHHhhHhHHHHHHHHHHHHhhccCCcccHHHH-hccceeecCccccce
Confidence 00 0 137999999999765553 34444443333 3577777 55799983
Q ss_pred ---CCc---------------------------------------------ccccccCCccCHHHHHHhcCchhHHHHHh
Q 012397 279 ---NNE---------------------------------------------KMSKSLGNFFTIRQITERYHPLALRHFLI 310 (464)
Q Consensus 279 ---~G~---------------------------------------------KmSks~gn~i~~~dll~~~~~dalR~~ll 310 (464)
+|+ |||||+||+|+|.+++++||+|++|||++
T Consensus 672 ~d~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eKMSKSKGNvVdP~eiI~kYGADaLRl~ll 751 (963)
T PLN02563 672 KDSDGEYVSADTADRLGELQQEKIPEEKVIKSGDSFVLKDDPSIRLIARAHKMSKSRGNVVNPDDVVSEYGADSLRLYEM 751 (963)
T ss_pred ecCCCcCcccccccccccccccccccccccccccccccccCCcccccccccccccccCCcCCHHHHHHHcCcHHHHHHHH
Confidence 455 99999999999999999999999999999
Q ss_pred hc-CCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCC--ccCCChhHHHHHHHHHHHHHHHHhcccChHHHH
Q 012397 311 SA-HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGK--TARINPAAEDCINKLRDEFHARMSDDLNTSHIL 387 (464)
Q Consensus 311 ~~-~~~~~~~f~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~~--~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al 387 (464)
.. ++.++..|+.+.+....+.+.++|+.+............... ....|++++.+++++++++.++| ++|+++.|+
T Consensus 752 ~~ap~~dd~~w~~~~V~g~~rfL~rlwn~~~~~~~~~~~~~~~~~~~~~~~d~~ll~kl~~~ikkVte~~-e~y~FntAi 830 (963)
T PLN02563 752 FMGPLRDSKTWSTSGVEGVHRFLGRTWRLVVGAPLPDGSFRDGTVVTDEEPSLEQLRLLHKCIAKVTEEI-ESTRFNTAI 830 (963)
T ss_pred hCCCcccccccCHHHHHHHHHHHHHHHHHHHHhhhcccccCccccccCCcchHHHHHHHHHHHHHHHHHH-HcCCHHHHH
Confidence 87 788999999999999999999999987543111111111111 12467899999999999999999 999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcccCchhhhhhHHHHHHHHHHHHHHHHHhhc-cCCCccHHHHHHHhhhhHhHhcCCCC
Q 012397 388 TGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVKTAFLVLLHVFFDDSP 462 (464)
Q Consensus 388 ~~yl~~l~~~~n~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~l~lLg-i~p~~~~e~i~~~l~~~~~~~~~~~~ 462 (464)
+. +++|++.+++ |.. ...++++.++.+|+ |+|+ +||+||+.|+...+++.+.||
T Consensus 831 ~~-lmef~n~l~~-------~~~------------~~~~~l~~ll~LLaPf~Ph-iaEELW~~Lg~~~sv~~~~WP 885 (963)
T PLN02563 831 SA-MMEFTNAAYK-------WDK------------VPREAIEPFVLLLSPYAPH-LAEELWFRLGHSNSLAYEPWP 885 (963)
T ss_pred HH-HHHHHHHHhC-------chH------------HHHHHHHHHHHHHHhhhhh-HHHHHHHHcCCCCeeeeCCCC
Confidence 99 9999987653 210 23578999999999 9999 999999999865678888888
No 47
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.3e-44 Score=383.49 Aligned_cols=422 Identities=19% Similarity=0.214 Sum_probs=313.6
Q ss_pred CCcceEEEeCC-CCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHH-cCC--------------
Q 012397 37 RGKVGMYVCGV-TAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRAND-LGE-------------- 100 (464)
Q Consensus 37 ~~~~~v~~~~P-~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~-~g~-------------- 100 (464)
+++..+++-|| ..||.+|||||-+-++-|++.|+..++|++|.++.|+|.||.+|+.++++ .|.
T Consensus 47 g~~~FvfhDGPPyANG~iHiGHalnKilKDiI~Ry~~m~G~~v~~~pGWDcHGLPIE~~vek~lg~~k~~i~~~~~~efr 126 (933)
T COG0060 47 GKPKFVLHDGPPYANGNIHIGHALNKILKDIIVRYKTMQGYDVPYVPGWDCHGLPIELKVEKKLGIGKKDIESFGVEEFR 126 (933)
T ss_pred CCCcEEEeCCCCCCCCCcchhhhHHHhhhhhhhhhhcccCCcCCCCCCCcCCCchHHHHHHHHhCCCcchhhhcCHHHHH
Confidence 45666777765 44599999999999999999999999999999999999999999988765 342
Q ss_pred -ChHHHHHHHHHHHHHHHHhcCCCCCCCCCCcc---hhHHHHHHHHHHHHHCCceEeecCcEEEcCCCC-----------
Q 012397 101 -NPLSLSNRYCQEYLVDMADLQCLPPTYQPRVS---DHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS----------- 165 (464)
Q Consensus 101 -~~~~~~~~~~~~~~~~l~~lgi~~~~~~~r~s---~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~----------- 165 (464)
.|.+++.++.+.+.+.+++||+..+-..+..| ++.+.+...|.++.+||++|++...++||+.|-
T Consensus 127 ~~Cr~~a~~~v~~q~~~f~RLGv~~Dw~npY~Tmd~~ye~~~~~~f~~~~~kGllyrg~Kpv~wsp~c~TaLAeaEvey~ 206 (933)
T COG0060 127 EKCREFALEQVDEQKEQFKRLGVWGDWENPYKTMDPSYEESVWWAFKELYEKGLLYRGYKPVPWSPRCETALAEAEVEYG 206 (933)
T ss_pred HHHHHHHHHHHHHHHHHHHhheEeeccCCCeecCCHHHHHHHHHHHHHHHHCCCeecCCeeeeecCCCCcchhhhhhccc
Confidence 16788889999999999999997432222222 678889999999999999999999999998851
Q ss_pred -----------CCC------CC-------------------------------------C--------------------
Q 012397 166 -----------PNY------GR-------------------------------------L-------------------- 171 (464)
Q Consensus 166 -----------~~~------g~-------------------------------------l-------------------- 171 (464)
+-- +. +
T Consensus 207 d~~dpSIyV~F~v~~~~~~~~~~lviWTTTPWTLPaN~aiav~pd~~Y~lv~~~~~~~IlA~~lve~~~~~~~~~~~~vl 286 (933)
T COG0060 207 DVKDPSIYVKFPVKDEGLDENAYLVIWTTTPWTLPANLAIAVHPDLDYVLVEVNGEKLILAKALVESVAKKAGVEDYEVL 286 (933)
T ss_pred ccCCceEEEEEEeccCCCCCCcEEEEEeCCCCCchhcceeEeCCCcceEEEEECCEEEEEhHHHHHHHHHHcCCcceEEe
Confidence 100 00 0
Q ss_pred ---CCccccccc-----------------cCCCcccCCc----ccCc----cccc-------------------------
Q 012397 172 ---SGQRLENNR-----------------AGERVAVDSR----KRNP----ADFA------------------------- 198 (464)
Q Consensus 172 ---~~~~~~~~~-----------------~g~~~~~~~~----k~~~----~d~~------------------------- 198 (464)
.|.+++.+. .|+.|..+.. ...| .||.
T Consensus 287 ~~~kG~~Leg~~y~hPf~~~~~~~~~~v~~gd~VT~d~GTG~VHtAPghGeeDy~vg~~~g~l~v~~pVD~~G~yt~~~~ 366 (933)
T COG0060 287 ETFKGSELEGLRYEHPFYDFVYDRAFPVILGDHVTLDDGTGLVHTAPGHGEEDYEVGKKYGLLEVLNPVDDNGRYTEEAP 366 (933)
T ss_pred EEeehhhhCCCEeeCCcccccccceeeEEecCeEecCCCccceecCCCCCHHHHHHHHHcCCcCCccccCCCccccccch
Confidence 000000000 0000000000 0000 0000
Q ss_pred ------------------------------------ccccc---------------------------------------
Q 012397 199 ------------------------------------LWKAA--------------------------------------- 203 (464)
Q Consensus 199 ------------------------------------~w~~~--------------------------------------- 203 (464)
.|+..
T Consensus 367 ~~~G~~v~dAn~~Ii~~Lk~~g~Ll~~e~i~HsYPhcWR~ktPlIyRAt~QWFi~v~~~r~~~l~~i~~v~w~P~~~~~R 446 (933)
T COG0060 367 KYEGLFVKDANKKIIEDLKEKGNLLKSEKIEHSYPHCWRTKTPLIYRATPQWFVSVDKLRDKMLKEINKVNWVPDWGKNR 446 (933)
T ss_pred hhCCceeccCCHHHHHHHHhCCceeeeeeEEeCCCcccCCCCeeEEeecchheeEHHHHHHHHHHHHhcceEEChhHHHH
Confidence 12221
Q ss_pred --------cCCCCcccCCCCCCCCchhhH-H----------HHHH-----------H------h----------------
Q 012397 204 --------KAGEPSWDSPWGPGRPGWHIE-C----------SAMS-----------A------H---------------- 231 (464)
Q Consensus 204 --------~~g~~~~~~~wg~~~P~w~~~-~----------~~~~-----------~------~---------------- 231 (464)
.+..++|+..||.|+|.|..+ | .... + +
T Consensus 447 ~~~mve~r~DW~ISRQR~WGvPiPi~~~~~~g~~~~~~~El~e~~~~~~~~~g~~~w~~~~idel~~~~~~~g~~~~rv~ 526 (933)
T COG0060 447 FGNMVENRPDWCISRQRYWGVPIPVWYCKETGEILVITEELEELVGQLVEEKGIDDWHRPDIDELLPPCPEDGKEYRRVP 526 (933)
T ss_pred HHHHHcCCCcceeeccccCCCceeEEEECCCCCeeccHHHHHHHHHHHhhhcCchhhhccchHhhcCCCCCCcceeEecC
Confidence 011235566799999988421 0 0000 0 0
Q ss_pred -----hc----------------CCCe---eEEEecccCccccchHHHHHHhhccCC-CCccEEEEeeeeee-CCccccc
Q 012397 232 -----YL----------------SSKF---DIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTN-NNEKMSK 285 (464)
Q Consensus 232 -----~~----------------~~~~---~i~~~G~D~~~~h~~~~~a~~~a~~~~-~~~~~~~~~~~v~~-~G~KmSk 285 (464)
+| ..+. |+...|.|+.+-++-.......++.+. |+.+++ .|||++. +|+||||
T Consensus 527 DvlDVWFDSGs~~~a~~~~~~~~~~~~~~aD~~lEGsDQ~RGWF~Ssl~~s~a~~~~aPYk~vl-tHGfvlDe~GrKMSK 605 (933)
T COG0060 527 DVLDVWFDSGSTPYAVLHPRENLKFPALFADFYLEGSDQTRGWFYSSLLTSTALFGRAPYKNVL-THGFVLDEKGRKMSK 605 (933)
T ss_pred cceEEEEcCCCCcccccCCcccccCccccCcEEEEeccccchhHHHHHHHHHHHcCCchHHHHh-hcccEECCCCCCccc
Confidence 01 1233 899999995444332233334455554 566664 4699998 9999999
Q ss_pred ccCCccCHHHHHHhcCchhHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCccccCC------CccCCC
Q 012397 286 SLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHG------KTARIN 359 (464)
Q Consensus 286 s~gn~i~~~dll~~~~~dalR~~ll~~~~~~~~~f~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~------~~~~~d 359 (464)
|+||+|+|.|++++||+|+||+|++++++..|+.|+++.+++....+..++|+++++..++.++.+.. .....|
T Consensus 606 SlGN~v~P~~V~~~yGADiLRLwv~ssd~~~dl~~s~~il~~~~~~~r~irNt~rF~l~nl~~fdp~~~~~~~~~~~~~D 685 (933)
T COG0060 606 SLGNVVDPQDVIDKYGADILRLWVASSDYWEDLRFSDEILKQVREVYRKIRNTYRFLLGNLDDFDPKKDAVLPEELRELD 685 (933)
T ss_pred cCCCcCCHHHHHHhhCchheeeeeeecCchhccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccchhhcchhH
Confidence 99999999999999999999999999999999999999999999999999999999999988876532 124679
Q ss_pred hhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHH-HHH-HHHhhhhc--ccCchhhhhhHHHHHHHHHHHHHHHHHhh
Q 012397 360 PAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDAL-KFI-NSSLNMLK--KKQPKQQQLSLIESLRKIENEVKEVLRIL 435 (464)
Q Consensus 360 ~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~-~~~-n~~~~~~~--~~~~~~~~~~r~~~~~~~~~~l~~~l~lL 435 (464)
+|++.+++++.+++.++| ++|+++.++.. |++|+ ..+ |.|++..| .|.+.+.+.+|++...+++++|..+..+|
T Consensus 686 rwil~rl~~l~~~v~eay-e~y~f~~v~~~-l~~F~~~dLS~~Yld~~kdr~y~~~~~s~~rraa~~~Ly~il~~l~~~l 763 (933)
T COG0060 686 RWILSRLNSLVKEVREAY-ENYDFHKVVRA-LMNFVSEDLSNWYLDIIKDRLYTEAADSPDRRAAQTTLYHILKALVRLL 763 (933)
T ss_pred HHHHHHHHHHHHHHHHHH-HhcCHHHHHHH-HHHHHHhhhhHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 99999999999 99999 566 55556554 48865677889999999999999999999
Q ss_pred c-cCCCccHHHHHHHhhhh---HhHhcCCCC
Q 012397 436 G-LLPPGAYSEVKTAFLVL---LHVFFDDSP 462 (464)
Q Consensus 436 g-i~p~~~~e~i~~~l~~~---~~~~~~~~~ 462 (464)
+ |+|+ +||+|||.|... .+||++++|
T Consensus 764 APilPf-taEeiw~~l~~~~~~eSVhl~~~p 793 (933)
T COG0060 764 APILPF-TAEEIWQNLPGERKEESVHLEDWP 793 (933)
T ss_pred cccchh-hHHHHHHhCccCCCCceeEeccCC
Confidence 9 9998 999999999666 899999998
No 48
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=1.9e-44 Score=364.82 Aligned_cols=279 Identities=16% Similarity=0.163 Sum_probs=207.4
Q ss_pred ceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHc---------CCC-------hH
Q 012397 40 VGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDL---------GEN-------PL 103 (464)
Q Consensus 40 ~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~---------g~~-------~~ 103 (464)
..|..++|+|||.|||||+++++++|+++|++|++|++|.+++|+|+||.+|+..|+++ +++ |+
T Consensus 3 f~i~~~pPy~nG~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG~pie~~a~k~~~~~~~~~~~~~~~~~~~~~~ 82 (382)
T cd00817 3 FVIDTPPPNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIEGKTRHDLGREEFLEKCW 82 (382)
T ss_pred EEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCCCChHHHHHHHHhcccccchhcCCHHHHHHHHH
Confidence 45666678888999999999999999999999999999999999999999999988764 344 35
Q ss_pred HHHHHHHHHHHHHHHhcCCCCC-CCCCCcc--hhHHHHHHHHHHHHHCCceEeecCcEEEcCCC---------CCCCCCC
Q 012397 104 SLSNRYCQEYLVDMADLQCLPP-TYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEK---------SPNYGRL 171 (464)
Q Consensus 104 ~~~~~~~~~~~~~l~~lgi~~~-~~~~r~s--~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~---------~~~~g~l 171 (464)
++++++.+.+.+++++|||+.+ +.+.+|+ +|.+.++++|.+|.++|++|++...++||+.| |.+||.-
T Consensus 83 ~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~yc~~~~t~l~~~evc~~cg~~ 162 (382)
T cd00817 83 EWKEESGGKIREQLKRLGASVDWSREYFTMDPGLSRAVQEAFVRLYEKGLIYRDNRLVNWCPKLRTAISDIEVCSRSGDV 162 (382)
T ss_pred HHHHHHHHHHHHHHHHhCceeecCCCcCCCCHHHHHHHHHHHHHHHHCCCEEeeeeEEeecCCcCCCCCcchhcccCCCe
Confidence 6899999999999999999852 2455554 68899999999999999999999999999885 4556531
Q ss_pred -----CCcccccccc-CCCcccCCcccCc---------cccccccc-ccCCCCcccCCCCCCCCchhhH-----------
Q 012397 172 -----SGQRLENNRA-GERVAVDSRKRNP---------ADFALWKA-AKAGEPSWDSPWGPGRPGWHIE----------- 224 (464)
Q Consensus 172 -----~~~~~~~~~~-g~~~~~~~~k~~~---------~d~~~w~~-~~~g~~~~~~~wg~~~P~w~~~----------- 224 (464)
+....-++.. .+.+ .+..+.++ ..+.-|.. ..+-.++|+..||+++|.|+..
T Consensus 163 ~~~~~~~qwf~~l~~~~~~l-~~~~~~~~~~~~P~~~~~~~~~~l~~l~Dw~ISR~~~WGipvP~~~~~~~~~~~~~~~~ 241 (382)
T cd00817 163 IEPLLKPQWFVKVKDLAKKA-LEAVKEGDIKFVPERMEKRYENWLENIRDWCISRQLWWGHRIPAWYCKDGGHWVVAREE 241 (382)
T ss_pred EEEEecCeeEEehHHHHHHH-HHHHhcCCcEEEChHHHHHHHHHHhhCccceeeeccccCCccceEEeCCCCcEEecchh
Confidence 0000000000 0000 00001111 00001211 2345568888999999976431
Q ss_pred ---------------------------------HH-HHHH-hh------c--CCCeeEEEecccCccccchHHHHHHhhc
Q 012397 225 ---------------------------------CS-AMSA-HY------L--SSKFDIHGGGIDLIFPHHENEIAQSCAA 261 (464)
Q Consensus 225 ---------------------------------~~-~~~~-~~------~--~~~~~i~~~G~D~~~~h~~~~~a~~~a~ 261 (464)
.. .++. .+ + .+|.|+|++|+|++++|+.+++++..++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~v~dvWfds~~~~~~~~~~~~~~~~~~~~~p~d~~~~G~D~~~~h~~~~l~~~~~~ 321 (382)
T cd00817 242 DEAIDKAAPEACVPCGGEELKQDEDVLDTWFSSSLWPFSTLGWPEETKDLKKFYPTSLLVTGHDIIFFWVARMIMRGLKL 321 (382)
T ss_pred HHHHHHhccccccCCCccCeeECCceeeeeecCCCcHHHHhCCCCcchhHhhcCCCCeeeeecCcCchHHHHHHHHHHHh
Confidence 10 0000 00 1 1478999999999999999999888877
Q ss_pred cCC-CCccEEEEeeeee-eCCcccccccCCccCHHHHHHhcCchhHHHHHhhc-CCCCccCC
Q 012397 262 CQD-SNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNY 320 (464)
Q Consensus 262 ~~~-~~~~~~~~~~~v~-~~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~-~~~~~~~f 320 (464)
.+. ++..+++ ||+++ .+|+|||||+||+|+|.|+++.+|+|++|||+++. ++++|.+|
T Consensus 322 ~g~~p~~~v~~-hg~v~~~~g~KMSKS~Gn~v~~~dll~~~g~Da~R~~ll~~~~~~~D~~f 382 (382)
T cd00817 322 TGKLPFKEVYL-HGLVRDEDGRKMSKSLGNVIDPLDVIDGYGADALRFTLASAATQGRDINL 382 (382)
T ss_pred hCCCchHHeEe-eeeEECCCCCCccccCCCCCCHHHHHHhcCcHHHHHHHHhCCCccCCCCC
Confidence 664 4577766 58998 59999999999999999999999999999999987 78888876
No 49
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.1e-42 Score=355.95 Aligned_cols=361 Identities=17% Similarity=0.118 Sum_probs=270.7
Q ss_pred CCcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHH-------HHH------------
Q 012397 37 RGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRR-------AND------------ 97 (464)
Q Consensus 37 ~~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~-------a~~------------ 97 (464)
+++|.|..+||||+|||||||+|++++||+|||+|++.||+|...++++|+|..+-.- ..+
T Consensus 116 ~~kV~iE~sSaNptkplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD~G~Q~~~l~~~~~~~~~e~~~~~~~~~~~l 195 (577)
T COG0018 116 GKKVVIEYSSANPTGPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVNDWGTQIGMLALSYEKRGREALGLTPEPDGYL 195 (577)
T ss_pred CCEEEEEEeCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeEEeeECcHHHHHHHHHHHHHHhccccccCCCCcchHH
Confidence 5799999999999999999999999999999999999999999999999998644211 101
Q ss_pred --------------cCCC--------------------hHHHHHHHHHHHHHHHHhcCCCCCCCCCCcc--hhHHHHHHH
Q 012397 98 --------------LGEN--------------------PLSLSNRYCQEYLVDMADLQCLPPTYQPRVS--DHMEQIKDM 141 (464)
Q Consensus 98 --------------~g~~--------------------~~~~~~~~~~~~~~~l~~lgi~~~~~~~r~s--~~~~~~~~~ 141 (464)
.+.+ |+.+++.....|.++|++|||.+ |.+...+ .+...+.++
T Consensus 196 g~~y~~i~~~~~~~~~~~~~~~~~~~~k~e~~d~~~~lw~~~v~~~l~~~k~~l~~l~V~f-D~~~~E~e~~~~~~~~~v 274 (577)
T COG0018 196 GEYYVKIAKDLEEDPGNDEEEAREEVEKLESGDEEAELWRKFVDLSLEGIKETLDRLGVKF-DVYDSEGESFYNGKVEKV 274 (577)
T ss_pred HHHHHHHHHHHHhCcccchHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhCccc-ceeeccchhhhcccHHHH
Confidence 0100 12267777888999999999986 5554333 334468899
Q ss_pred HHHHHHCCceEeecCcEEEcCCCCCCCCCCCCccccccccCCCcccCCcccCcccccccccccCCCCcccCCCCCCCCch
Q 012397 142 ITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGW 221 (464)
Q Consensus 142 ~~~L~~~G~~y~~~~~~~~~~~~~~~~g~l~~~~~~~~~~g~~~~~~~~k~~~~d~~~w~~~~~g~~~~~~~wg~~~P~w 221 (464)
+..|.++|++|+.++..+.+...+... | ++.|..+-| ++|..++.+.
T Consensus 275 v~~L~~~~~~~e~~GA~~vdl~~~~~~-------------g----------d~~~~vl~K--SDGt~lY~t~-------- 321 (577)
T COG0018 275 VEDLEEKGLLYEDDGALVVDLLKFKKF-------------G----------DDKDRVLQK--SDGTYLYFTR-------- 321 (577)
T ss_pred HHHHHhcCCEeeeCCeEEEehhhhhhc-------------C----------CCCCeEEEE--cCCCeeeehh--------
Confidence 999999999998766655443321111 1 111322322 3444322110
Q ss_pred hhHHHHHHHhh-cCCCeeEEEecccCccccchHHHHHHh----hccCCCCccEEEEeeeeee---CCcccccccCCccCH
Q 012397 222 HIECSAMSAHY-LSSKFDIHGGGIDLIFPHHENEIAQSC----AACQDSNVSYWMHNGHVTN---NNEKMSKSLGNFFTI 293 (464)
Q Consensus 222 ~~~~~~~~~~~-~~~~~~i~~~G~D~~~~h~~~~~a~~~----a~~~~~~~~~~~~~~~v~~---~G~KmSks~gn~i~~ 293 (464)
.+++ ...++ .+....|++.|.| |+ ..+.++. +++..+...+..|.++.++ +|.|||||.|++|++
T Consensus 322 DIAy--~~~K~~~~~d~~IyV~gad----q~-~~~~ql~~~l~~~g~~~~~~~~~h~~~~l~~~~~g~kmStR~G~~vtl 394 (577)
T COG0018 322 DIAY--HLYKFERGFDKLIYVLGAD----QH-GHFKQLKAVLELLGYGPDKEVLLHQGVGLVRGGEGVKMSTRAGNVVTL 394 (577)
T ss_pred HHHH--HHHHHhcCCCEEEEEeCCc----ch-hHHHHHHHHHHHhcCCCccceEEEEEEeeeECCCCccccccCCceEEH
Confidence 1222 11222 5557789999999 55 2333333 3344444355677766555 577999999999999
Q ss_pred HHHHHhcC----------------------chhHHHHHhhcCCCCccCCCHHHHHHHHH-HHHHHHHHHHHHHHhcCccc
Q 012397 294 RQITERYH----------------------PLALRHFLISAHYRSPLNYSVLQLDSASD-AVFYIYQTLQDCEVALSPFQ 350 (464)
Q Consensus 294 ~dll~~~~----------------------~dalR~~ll~~~~~~~~~f~~~~~~~~~~-~l~~l~~~~~~~~~~l~~~~ 350 (464)
+|+++..+ .+|+||++++.++.++++|+|+.+.+..+ ...|+||+++|++|+++++.
T Consensus 395 ~dllde~~era~~~~~~~~~~~~~iA~~vgi~Avry~~l~~~~~~~~~Fd~d~~lsfegNt~pYvQYA~ARi~SIlrka~ 474 (577)
T COG0018 395 DDLLDEAGERAPEEMEEKEEKNEEIAEVVGIDAVRYADLSRSRDKDYVFDWDKALSFEGNTAPYVQYAHARICSILRKAG 474 (577)
T ss_pred HHHHHHHHHHhhhHhhhhhhhhHHHHHHhhhhhHHHHHHhcCCCCCcEeeHHHHHhccCCCchhHHHHHHHHHHHHHhcc
Confidence 99999888 99999999999999999999999998765 67799999999999998875
Q ss_pred cCC----------CccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhcccCchh--hhhhHH
Q 012397 351 EHG----------KTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQ--QQLSLI 418 (464)
Q Consensus 351 ~~~----------~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~~~~~~~~--~~~~r~ 418 (464)
... ...+.+..|+.+|.+++..+.++. +++. |+.++.||++++..||+||+.|++....+ ...+|+
T Consensus 475 e~~~~~~~~~~~~l~~~~E~~L~~~L~~fp~vl~~aa-~~~~-Ph~la~YL~~LA~~Fn~fY~~~~Vl~~~~~~~~~aRL 552 (577)
T COG0018 475 EDELDLSTEADALLTELEERELVKKLLEFPEVLEEAA-EELE-PHRLANYLYDLAGSFNSFYNACPVLGAENEELRAARL 552 (577)
T ss_pred ccccccccccchhccChHHHHHHHHHHHhHHHHHHHH-HhcC-chHHHHHHHHHHHHHHHHHhhCCcCCCCcHHHHHHHH
Confidence 211 113346889999999999999999 6765 88888889999999999999999987544 467999
Q ss_pred HHHHHHHHHHHHHHHhhccCCC
Q 012397 419 ESLRKIENEVKEVLRILGLLPP 440 (464)
Q Consensus 419 ~~~~~~~~~l~~~l~lLgi~p~ 440 (464)
.++.++..+|++++.||||.|+
T Consensus 553 ~L~~a~~~vL~ngL~LLGI~~~ 574 (577)
T COG0018 553 ALVKATRQVLKNGLDLLGIEAP 574 (577)
T ss_pred HHHHHHHHHHHHHHHhcCCCCc
Confidence 9999999999999999999876
No 50
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=8.2e-42 Score=360.10 Aligned_cols=360 Identities=14% Similarity=0.072 Sum_probs=273.7
Q ss_pred CCcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHH---HHHHcCC-------------
Q 012397 37 RGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIR---RANDLGE------------- 100 (464)
Q Consensus 37 ~~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~---~a~~~g~------------- 100 (464)
++++.|..++|||+|||||||+|++++||+|+|+|+++|++|...++++|+|..+-. ...+.|.
T Consensus 112 ~~~v~vE~sSpNp~kplHvGH~R~aiiGd~l~ril~~~G~~V~r~nyinD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~l~ 191 (562)
T PRK12451 112 EKTVVIDYSSPNIAKPFSMGHLRSTMIGNALKHIAEKCGYEVVGINYIGDWGTQFGKLITAYKKWGNEAVVKEDPIRELF 191 (562)
T ss_pred CCEEEEEecCCCCCCCcccchhhhHHHHHHHHHHHHHCCCCeEEEeeecCchHHHHHHHHHHHHhCCccccccCchHHHH
Confidence 578999999999999999999999999999999999999999999999999864421 1111110
Q ss_pred ------------------------------C------hHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchhHHHHHHHHHH
Q 012397 101 ------------------------------N------PLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQ 144 (464)
Q Consensus 101 ------------------------------~------~~~~~~~~~~~~~~~l~~lgi~~~~~~~r~s~~~~~~~~~~~~ 144 (464)
+ ++.+++...+.|.++|++|||.+ |.+...|.+.+.+.+++++
T Consensus 192 ~~Y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~l~~~~~~~~~l~V~f-D~~~~es~~~~~~~~v~~~ 270 (562)
T PRK12451 192 KLYVQFHEEVKDDEELEEEGRAWFKKLEEGDEEAVELWNWFRHESLKEFSRIYELLGVEF-TNFQGEAFYNDLMEDFIGI 270 (562)
T ss_pred HHHHHHHHhhccChhHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCc-eeecchHhhhhhHHHHHHH
Confidence 1 34556777788999999999996 6666667777778999999
Q ss_pred HHHCCceEeecCcEEEcCCCCCCCCCCCCccccccccCCCcccCCcccCcccccccccccCCCCcccCCCCCCCCchhhH
Q 012397 145 IINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIE 224 (464)
Q Consensus 145 L~~~G~~y~~~~~~~~~~~~~~~~g~l~~~~~~~~~~g~~~~~~~~k~~~~d~~~w~~~~~g~~~~~~~wg~~~P~w~~~ 224 (464)
|.++|++|+.++..|.+... .|. + |..+-| ++|..++... .++
T Consensus 271 L~~~g~~~e~dGa~~~~~~~---~g~-----------------------~-~~vl~k--sDGt~~Y~t~--------DiA 313 (562)
T PRK12451 271 LEEHDLLEESEGALVVNLEE---EGM-----------------------P-PCLIRK--SDGATIYATR--------DLT 313 (562)
T ss_pred HHHCCCEEecCCeEEEEecc---cCC-----------------------C-ceEEEe--CCCccccchh--------HHH
Confidence 99999999988888765321 110 0 222222 3454433210 112
Q ss_pred HHHHHHhhcCCCeeEEEecccCccccchH---HHHHHhhccCCCCccE-EEEeeeeeeCCcccccccCCccCHHHHHHh-
Q 012397 225 CSAMSAHYLSSKFDIHGGGIDLIFPHHEN---EIAQSCAACQDSNVSY-WMHNGHVTNNNEKMSKSLGNFFTIRQITER- 299 (464)
Q Consensus 225 ~~~~~~~~~~~~~~i~~~G~D~~~~h~~~---~~a~~~a~~~~~~~~~-~~~~~~v~~~G~KmSks~gn~i~~~dll~~- 299 (464)
+......-++.+..|++.|.| |+.. ..+.+.+++..+..++ .+..|+|.++|+|||||+|++|+++||++.
T Consensus 314 ~~~~k~~~~~~d~~IyV~g~d----q~~h~~~l~~~~~~lg~~~~~~l~h~~~g~V~~~g~kmStR~G~~v~l~dLldea 389 (562)
T PRK12451 314 AALYRQNTFGFDKALYVVGPE----QSLHFNQFFTVLKKLGYTWVDGMEHVPFGLILKDGKKMSTRKGRVVLLEEVLEEA 389 (562)
T ss_pred HHHHHhhccCCCEEEEEeCCc----HHHHHHHHHHHHHHcCCCcccCeEEEeeeeEecCCCCCcCCCCCeeEHHHHHHHH
Confidence 111111114556779999999 5432 2233344453322222 233467777999999999999999999996
Q ss_pred ------------------------cCchhHHHHHhhcCCCCccCCCHHHHHHHHHH-HHHHHHHHHHHHHhcCccccCC-
Q 012397 300 ------------------------YHPLALRHFLISAHYRSPLNYSVLQLDSASDA-VFYIYQTLQDCEVALSPFQEHG- 353 (464)
Q Consensus 300 ------------------------~~~dalR~~ll~~~~~~~~~f~~~~~~~~~~~-l~~l~~~~~~~~~~l~~~~~~~- 353 (464)
+|.+|+||++++.++.++++||++.+.+..++ -.|+||+++|++|+++++....
T Consensus 390 ~~~a~~~~~~~~~~l~~~~~~a~~vg~~Airy~~l~~~~~~~~~Fd~d~~l~~~g~t~pYiQYa~AR~~SIlrka~~~~~ 469 (562)
T PRK12451 390 IELAKQNIEEKNPNLKQKEEVAKQVGVGAVIFHDLKNERMHNIEFSLENMLKFEGETGPYVQYTHARACSILRKESVEFE 469 (562)
T ss_pred HHHHHHHHHhhccccccHHHHHHHhccceeeeHHhhcCCCCCceECHHHHhCcCCCccHHHHHHHHHHHHHHHhcCCCcc
Confidence 77999999999999999999999998877633 4499999999999998874211
Q ss_pred -----CccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhcccCchhhhhhHHHHHHHHHHHH
Q 012397 354 -----KTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEV 428 (464)
Q Consensus 354 -----~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~~~~~~~~~~~~r~~~~~~~~~~l 428 (464)
..++.+..|+..+.++++.+.+++ ++++++.++.. +++++..+|+||+.+++...+.....|+.++.++..+|
T Consensus 470 ~~~~~l~~~~E~~Ll~~L~~~~~~v~~a~-e~~ep~~~~~y-l~~LA~~fN~fy~~~~Vl~~~~~~~~RL~L~~a~~~vL 547 (562)
T PRK12451 470 TCTFALKDDYSWSVVKLLNKFPQVIEAAF-NKNEPSVISKY-VLDVAQSFNKYYGNVRILEESAEKDSRLALVYAVTVVL 547 (562)
T ss_pred ccccCCCCHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHH-HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 114566789999999999999999 99998888777 99999999999999998754445679999999999999
Q ss_pred HHHHHhhccCCC
Q 012397 429 KEVLRILGLLPP 440 (464)
Q Consensus 429 ~~~l~lLgi~p~ 440 (464)
++++.||||.|+
T Consensus 548 ~~gL~LLGI~~~ 559 (562)
T PRK12451 548 KEGLRLLGVEAP 559 (562)
T ss_pred HHHHHhcCCCcc
Confidence 999999999887
No 51
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=4.3e-42 Score=379.67 Aligned_cols=210 Identities=19% Similarity=0.168 Sum_probs=180.0
Q ss_pred CCeeEEEecccCccccchHHHHHHhhccC-CCCccEEEEeeeeeeCCcccccccCCccCHHHHHHhcCchhHHHHHhhc-
Q 012397 235 SKFDIHGGGIDLIFPHHENEIAQSCAACQ-DSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA- 312 (464)
Q Consensus 235 ~~~~i~~~G~D~~~~h~~~~~a~~~a~~~-~~~~~~~~~~~~v~~~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~- 312 (464)
+|+|++++|+|++++|+.++.....++.+ .++++-+++|||++++|+|||||+||+|+|.|++++||+|++|||+++.
T Consensus 529 ~P~D~~~~GkDii~~Hl~~~~~~~~a~~~~~~~Pk~v~~hG~vl~~G~KMSKS~GNvVdp~eii~~yGaDalRl~L~~~~ 608 (897)
T PRK12300 529 YPVDWRHSGKDLIPNHLTFFIFNHVAIFPEEKWPRGIVVNGFVLLEGKKMSKSKGNVIPLRKAIEEYGADVVRLYLTSSA 608 (897)
T ss_pred CCceEEEeeeccCccHHHHHHHHHHHhcCCCccCcEEEEcceEEECCccccCcCCCCCCHHHHHHHcChHHHHHHHHhCC
Confidence 47899999999999999998777776655 3554445778999999999999999999999999999999999999986
Q ss_pred CCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHH
Q 012397 313 HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQ 392 (464)
Q Consensus 313 ~~~~~~~f~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~ 392 (464)
++++|.+|+++.+.+..+.+.+++++++++...... ......|+|++.+++++++++.++| ++|+++.|+.. ++
T Consensus 609 ~~~~D~~fs~~~v~~~~~~l~r~~~~~~~~~~~~~~----~~~~~~D~wils~l~~~i~~v~~~~-e~~~~~~A~~~-i~ 682 (897)
T PRK12300 609 ELLQDADWREKEVESVRRQLERFYELAKELIEIGGE----EELRFIDKWLLSRLNRIIKETTEAM-ESFQTRDAVQE-AF 682 (897)
T ss_pred CCCCCCccCHHHHHHHHHHHHHHHHHHHHHhcCCCc----cccCHhHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHH-HH
Confidence 899999999999999999999999988765432211 1234578999999999999999999 99999999988 64
Q ss_pred -HHHHHHHHHhhhhcccCchhhhhhHHHHHHHHHHHHHHHHHhhc-cCCCccHHHHHHHhhhhHhHhcCCCC
Q 012397 393 -DALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVKTAFLVLLHVFFDDSP 462 (464)
Q Consensus 393 -~l~~~~n~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~l~lLg-i~p~~~~e~i~~~l~~~~~~~~~~~~ 462 (464)
.+.+.+|+|++.+++ ....++.++++.++.+|+ |+|+ +||+||+.|+..-+++++.||
T Consensus 683 ~~l~~~~n~Yi~~~k~-----------~~~~~l~~~l~~~~~lLaPf~P~-~aEeiw~~L~~~~sv~~~~wP 742 (897)
T PRK12300 683 YELLNDLRWYLRRVGE-----------ANNKVLREVLEIWIRLLAPFTPH-LAEELWHKLGGEGFVSLEKWP 742 (897)
T ss_pred HHHHHHHHHHHHhcch-----------HHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHcCCCCeEEeCCCC
Confidence 777889999987664 345678899999999999 9999 999999999866688899888
No 52
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=9.9e-44 Score=350.87 Aligned_cols=271 Identities=17% Similarity=0.144 Sum_probs=205.5
Q ss_pred ceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q 012397 40 VGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMAD 119 (464)
Q Consensus 40 ~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 119 (464)
..|..+.|+|||.+||||+|+++.+|+++|++|++|++|.++.|+||+|++|+.+|+++|++|+++++++.+.|.+++++
T Consensus 2 ~~it~~~Py~ng~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~~~~ 81 (314)
T cd00812 2 FYILVMFPYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKIGRDPEDWTEYNIKKMKEQLKR 81 (314)
T ss_pred eEEecCCCCCCCCccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 45666778888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCC--CCCcc--hhHHHHHHHHHHHHHCCceEeecCcEEEcCCCCCCCCCCCC----ccccccccCCCcccCCcc
Q 012397 120 LQCLPPTY--QPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSG----QRLENNRAGERVAVDSRK 191 (464)
Q Consensus 120 lgi~~~~~--~~r~s--~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~~g~l~~----~~~~~~~~g~~~~~~~~k 191 (464)
|||++ |. +.+++ +|.+.++++|.+|.++|++|+++..++||..+..-+=+++. ..+.+..+.... .+...
T Consensus 82 lgi~~-d~~~~~~t~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~~f~~l~~~~~~~~l~~~l~~~~~-~p~~~ 159 (314)
T cd00812 82 MGFSY-DWRREFTTCDPEYYKFTQWLFLKLYEKGLAYKKEAPVNWCKLLDQWFLKYSETEWKEKLLKDLEKLDG-WPEEV 159 (314)
T ss_pred hccce-ecccccccCCHHHHHHHHHHHHHHHHCCCEEecCceeeeeCccceEEEEcCcHHHHHHHHHHHHhcCc-CCHHH
Confidence 99985 52 33443 68889999999999999999999999999443111111210 011111010000 00000
Q ss_pred cCcccccccccccCCCCcccCCCCCCCCc------hhhHHH---HHH-------------------HhhcCCCeeEEEec
Q 012397 192 RNPADFALWKAAKAGEPSWDSPWGPGRPG------WHIECS---AMS-------------------AHYLSSKFDIHGGG 243 (464)
Q Consensus 192 ~~~~d~~~w~~~~~g~~~~~~~wg~~~P~------w~~~~~---~~~-------------------~~~~~~~~~i~~~G 243 (464)
. +....|.. ++|+..||+++|. |.+++. .+. ..+| +|.|++++|
T Consensus 160 ~--~~~~~~l~-----isR~~~wGipvP~~~~i~~w~ds~~y~~~y~~~~~~~~~~~~~~~~~~~~~~~w-~p~di~v~G 231 (314)
T cd00812 160 R--AMQENWIG-----CSRQRYWGTPIPWTDTMESLSDSTWYYARYTDAHNLEQPYEGDLEFDREEFEYW-YPVDIYIGG 231 (314)
T ss_pred H--HHHHHHhe-----eeeecCCcCCcCcccccccccccHHHHHHHHhcccccCcchhhhhhhHHHHHHh-CCCeeeecc
Confidence 0 11122332 6788899999994 443321 010 0122 378999999
Q ss_pred ccCccccc---hHHHHHHhhccC---CCCccEEEEeeeeeeCCcccccccCCccCHHHHHHhcCchhHHHHHhhcCCCCc
Q 012397 244 IDLIFPHH---ENEIAQSCAACQ---DSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSP 317 (464)
Q Consensus 244 ~D~~~~h~---~~~~a~~~a~~~---~~~~~~~~~~~~v~~~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~~~~~~ 317 (464)
+|++++|+ .++++.+.+.+. .++.++. ++|||+++|+|||||+||+|++.|+++++|+|++||++++..+ ++
T Consensus 232 ~D~i~~h~~~~~~~~~~l~~~g~~~~~~~~~~~-~~g~v~~~g~KmSkS~Gn~v~~~dll~~~~~Da~R~~ll~~~~-~~ 309 (314)
T cd00812 232 KEHAPNHLLYSRFNHKALFDEGLVTDEPPKGLI-VQGMVLLEGEKMSKSKGNVVTPDEAIKKYGADAARLYILFAAP-PD 309 (314)
T ss_pred hhHHHHHHHHHHHHHHHHcCcccccccCcHHhe-ecceEecCccccCCcCCCCCCHHHHHHHhCcHHHHHHHHhcCC-cC
Confidence 99999997 567777776664 5566664 6899999999999999999999999999999999999999865 89
Q ss_pred cCCCH
Q 012397 318 LNYSV 322 (464)
Q Consensus 318 ~~f~~ 322 (464)
.+|+|
T Consensus 310 ~~f~~ 314 (314)
T cd00812 310 ADFDW 314 (314)
T ss_pred CCCCC
Confidence 99875
No 53
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.4e-42 Score=364.48 Aligned_cols=415 Identities=17% Similarity=0.179 Sum_probs=297.0
Q ss_pred CcceeecccCCC-Cc-ceEEEeCCCCC--CcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCC
Q 012397 26 TQQKELFTPIVR-GK-VGMYVCGVTAY--DLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGEN 101 (464)
Q Consensus 26 ~~~~~~~~~~~~-~~-~~v~~~~P~p~--G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~ 101 (464)
+.+...|++..+ ++ ..+|++.|-|| |.|||||+|+++++|++||+.|++|++|++..|+|-.|.+++..|.+.|.+
T Consensus 18 W~e~~~Fe~~~d~~~~~Kfyvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMGwdafGlPae~~A~~~~~~ 97 (814)
T COG0495 18 WEEAKVFEADEDSDKPEKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKIGTD 97 (814)
T ss_pred HHhcCCcccCCCCCCCCceEEEeCCCCCCCCcccCccccccHHHHHHHHHHhcCCeecccCcccccCchHHHHHHHhCCC
Confidence 445567777554 22 36777775555 999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCC--CCCCCcc-hhHHHHHHHHHHHHHCCceEeecCcEEEcCCC-------------C
Q 012397 102 PLSLSNRYCQEYLVDMADLQCLPP--TYQPRVS-DHMEQIKDMITQIINNDCAYVVEGDVFFAVEK-------------S 165 (464)
Q Consensus 102 ~~~~~~~~~~~~~~~l~~lgi~~~--~~~~r~s-~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~-------------~ 165 (464)
|..+++.+.+.++++|+.||.+++ ..+..+. +|.+.+|.+|.+|.++|++|+++..+.||+.+ |
T Consensus 98 P~~wt~~ni~~~k~qlk~lG~siDW~Ref~T~Dp~Yyk~~QW~F~kL~ekGL~y~~~~~VnwcP~d~tvlaneqv~~g~~ 177 (814)
T COG0495 98 PAKWTYYNIAYMKKQLKSLGFSIDWRREFATCDPEYYKWIQWQFLKLYEKGLAYRKEAPVNWCPVDGTVLANEQVIDGGC 177 (814)
T ss_pred hHHHHHHHHHHHHHHHHHhCCccccccceecCCccHHHHHHHHHHHHHHCCCEEeccccceeCCCcCCccccceeecCCc
Confidence 999999999999999999999852 1222222 89999999999999999999999999999984 4
Q ss_pred CCCCCC-------------CC--------------ccccc-------------------cccCC--CcccC---------
Q 012397 166 PNYGRL-------------SG--------------QRLEN-------------------NRAGE--RVAVD--------- 188 (464)
Q Consensus 166 ~~~g~l-------------~~--------------~~~~~-------------------~~~g~--~~~~~--------- 188 (464)
-+||.. +. ...+. ...|. ....+
T Consensus 178 ~r~~~~V~~kel~qw~~kit~yae~ll~~l~~l~~~wPE~Vk~mq~nWIg~s~g~~v~f~~~~~~~~~~~~vfttr~dt~ 257 (814)
T COG0495 178 WRCGEPVEIKELTQWFFKITDYADELLDDLDKLATLWPETVKGMQRNWIGPSEGYEVAFVVDGEEEIVSIEVFTTRPDTL 257 (814)
T ss_pred ccCCCceeEeeeEEEEEEechhHHHHHhhhhhhccCCchhHHHHHHcCcCCCCCeEEEEecCCcccceeeeeeeccCccc
Confidence 455530 00 00000 00000 00000
Q ss_pred ---------------------C----------------------------------cccCc-------------------
Q 012397 189 ---------------------S----------------------------------RKRNP------------------- 194 (464)
Q Consensus 189 ---------------------~----------------------------------~k~~~------------------- 194 (464)
. +..+|
T Consensus 258 ~gvt~~~~a~~h~lv~~~~~~~~~~~~a~fv~~~~~~~~~~~~~~~~~k~gv~~g~~a~~p~~~e~iPi~~a~~vl~~yg 337 (814)
T COG0495 258 FGVTYVVLAPEHPLVGKLVTNPQTPLVAEFVDECKGTGVVESVPAHAEKDGVFLGGYAINPVNGEKIPVWIANYVLMEYG 337 (814)
T ss_pred cCeEEEEEeCCchHHHHHhcCccchhHHHHHHHhcCCCceeeeeccCCCcceeccccccCCCCCCcCCEEEeCccccccc
Confidence 0 00000
Q ss_pred ------------ccccccccc----------cC----------------------------------------C------
Q 012397 195 ------------ADFALWKAA----------KA----------------------------------------G------ 206 (464)
Q Consensus 195 ------------~d~~~w~~~----------~~----------------------------------------g------ 206 (464)
+|+...+.. .. |
T Consensus 338 tgavm~vpahd~rd~efA~~y~l~i~~vi~~~~~~~~~~~~~~g~linS~~~~gl~~e~a~~~~~~~l~~~~~~q~~v~Y 417 (814)
T COG0495 338 TGAVMGVPAHDERDLEFATKYKLPIKKVIMPEGTVGKKVYEGEGVLINSGGLDGLDYEEAKVKIRCGLVKRGLGQWFVNY 417 (814)
T ss_pred ccceecCCCCCchhhHHHHhcCCCeEEEEecCCCcccceeccCceEeccccccCcchhHHHHHHHHhHHHhcCCceEEec
Confidence 111100000 00 0
Q ss_pred -CCcc----cCCCCCCCCc--------------------------------------hhh-HHH----------------
Q 012397 207 -EPSW----DSPWGPGRPG--------------------------------------WHI-ECS---------------- 226 (464)
Q Consensus 207 -~~~~----~~~wg~~~P~--------------------------------------w~~-~~~---------------- 226 (464)
...| ...||.++|- |.. .|+
T Consensus 418 ~lrdW~~srqRywg~pipii~~e~~~~~~~~~d~Lpv~lp~~~~~~gt~~pL~~~~~W~~~s~~~s~~~ret~Tm~~~~~ 497 (814)
T COG0495 418 RLRDWLKSRQRYWGEPIPIIHCEDCGVVPVPEDWLPVKLPERVRGLGTGSPLPWDEEWVIESLPDSTAYRETDTMDTFID 497 (814)
T ss_pred ccchHHHHHHHHhCCCcceeEcccCCcccCchHhcCcccccccccCCCCCCCCCCcceEEEecCCCceeeehhhhhHhcc
Confidence 0011 1134544441 211 010
Q ss_pred --HHHH------------------hhcCCCeeEEEecccCccccchHHHHHHhhccC-------CCCccEEEEeeeeee-
Q 012397 227 --AMSA------------------HYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQ-------DSNVSYWMHNGHVTN- 278 (464)
Q Consensus 227 --~~~~------------------~~~~~~~~i~~~G~D~~~~h~~~~~a~~~a~~~-------~~~~~~~~~~~~v~~- 278 (464)
.+.. .|| .|+|++++|+||+..|..+......++.. .|+.++ +.+|||+.
T Consensus 498 sswy~~r~~d~~~~~~~~~~~e~~~yW-~PVD~yigG~ehavlHLly~rF~Hkal~d~g~~p~~epf~~L-~~qGmVl~~ 575 (814)
T COG0495 498 SSWYYLRFFDPIFLGELPFDREEFNYW-YPVDLYIGGIEHAVLHLLYFRFFHKALFDEGLVPKDEPFKKL-ITQGMVLGE 575 (814)
T ss_pred cccccHhhcChhcCccchhcHHHHhcc-cChheeecchhHHHHHHHHHHHHHHHhcccCcCCCccchhhh-hccceEEec
Confidence 0000 012 38999999999999999888888877752 355566 66999999
Q ss_pred CCcccccccCCccCHHHHHHhcCchhHHHHHhhc-CCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCccC
Q 012397 279 NNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTAR 357 (464)
Q Consensus 279 ~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~-~~~~~~~f~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~ 357 (464)
+|+|||||+||+|+|++++++||+|++|+|++.. ++.++++|+.+.+..+.+.+.++++.+.......... .+.
T Consensus 576 ~g~KMSKSKgN~v~p~~~i~~yGADt~Rl~~m~~ap~~~d~~W~e~gv~g~~rfL~r~~~l~~~~~~~~~~~-----~~~ 650 (814)
T COG0495 576 EGEKMSKSKGNVVDPEEAVEKYGADTVRLYIMFAAPPEQDLEWSESGVEGARRFLQRVWNLVKEHLEKLVEE-----LTK 650 (814)
T ss_pred CCCccccccCCCCCHHHHHHHhCchHHHHHHHhhCChhhCCCCChhhhHHHHHHHHHHHHHHHHhhhccccc-----ccc
Confidence 8999999999999999999999999999999987 8899999999999999999999999887655432111 111
Q ss_pred CC-hhHHHHHHHHHHHHHHHHhcc-cChHHHHHHHHHHHHHHHHHHhhhhcccCchhhhhhHHHHHHHHHHHHHHHHHhh
Q 012397 358 IN-PAAEDCINKLRDEFHARMSDD-LNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRIL 435 (464)
Q Consensus 358 ~d-~~l~~~l~~~~~~v~~~~~~~-~~~~~al~~yl~~l~~~~n~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~l~lL 435 (464)
.+ ..+...++++++.+.+.+ +. +.++.+++. +|+|.+.+.+|...... .+ ..+..+++.++.+|
T Consensus 651 ~~~~~~~~~~h~~~~~v~~~~-e~~~~~nt~i~~-~m~l~N~l~~~~~~~~~--------~~----~~l~~~l~~~v~lL 716 (814)
T COG0495 651 EQGKEDRWLLHRTIKKVTEDF-EARQTFNTAIAA-LMELLNALRKYLRRTEG--------DR----KVLREALETWVRLL 716 (814)
T ss_pred hhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-HHHHHHHHHHHHhcccc--------hH----HHHHHHHHHHHHHh
Confidence 12 455566677777788888 55 778889999 99999999998765432 01 56777899999999
Q ss_pred c-cCCCccHHHHHHHhhhhHhHhcCCCC
Q 012397 436 G-LLPPGAYSEVKTAFLVLLHVFFDDSP 462 (464)
Q Consensus 436 g-i~p~~~~e~i~~~l~~~~~~~~~~~~ 462 (464)
. |+|+ +||++|+.|+---.+....||
T Consensus 717 aP~aPH-~aEElW~~lg~~~~v~~~~wP 743 (814)
T COG0495 717 APFAPH-IAEELWEELGNEGFVSNAPWP 743 (814)
T ss_pred cccccH-HHHHHHHHhcCCCceeeCCCC
Confidence 9 9999 999999999842245555555
No 54
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=100.00 E-value=2.2e-41 Score=358.21 Aligned_cols=367 Identities=16% Similarity=0.112 Sum_probs=274.9
Q ss_pred ceeecccCC--CCcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHH---HH-----
Q 012397 28 QKELFTPIV--RGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRA---ND----- 97 (464)
Q Consensus 28 ~~~~~~~~~--~~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a---~~----- 97 (464)
+...|.+.. ++++.|+.|||||+|++||||+|++++||+|+|++++.|++|...++++|+|..+-.-+ .+
T Consensus 100 ~~~~~g~~~~~~~~v~ve~~spn~~~~~hiGh~r~~~~gd~l~r~~~~~g~~v~r~~yinD~G~Q~~~l~~~~~~~~~~~ 179 (566)
T TIGR00456 100 QKEDYGSKKLKNKKIIIEFSSANPAGPLHIGHLRNAIIGDSLARILEFLGYDVIREYYVNDWGRQFGLLALGVEKFGNEK 179 (566)
T ss_pred cccccCCCCCCCCeEEEEecCCCCCCCCchhhhHHHHHHHHHHHHHHHCCCCeeEEeeecchHHHHHHHHHHHHHhCCcc
Confidence 334454333 35899999999999999999999999999999999999999999999999986442111 00
Q ss_pred -----------------------------------------cCCC-----hHHHHHHHHHHHHHHHHhcCCCCCCCCC--
Q 012397 98 -----------------------------------------LGEN-----PLSLSNRYCQEYLVDMADLQCLPPTYQP-- 129 (464)
Q Consensus 98 -----------------------------------------~g~~-----~~~~~~~~~~~~~~~l~~lgi~~~~~~~-- 129 (464)
.|.+ ++..++...+.|.++|++|||.+ |.+.
T Consensus 180 ~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~~d~~~~~~w~~~~~~~l~~~~~~~~~l~V~f-D~~~~E 258 (566)
T TIGR00456 180 LNEAVKKPDHGLEGFYVEINKRLEENEELEEEARELFVKLESGDEEAIKLWKRLVEYSLEGIKETLARLNIHF-DSFVWE 258 (566)
T ss_pred ccCcccCChHHHHHHHHHHHHHHhhCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCce-eeeecc
Confidence 0111 35667778888999999999986 5554
Q ss_pred CcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCCCCCCCCCCCccccccccCCCcccCCcccCcccccccccccCCCCc
Q 012397 130 RVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPS 209 (464)
Q Consensus 130 r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~~g~l~~~~~~~~~~g~~~~~~~~k~~~~d~~~w~~~~~g~~~ 209 (464)
..+.+...+.+++++|.++|++|+. +..|.+... +|. ++.|..+-| ++|..+
T Consensus 259 ~e~~~~~~~~~v~~~L~~~g~~~~~-Ga~~~~~~~---~~d----------------------~~~~~vl~k--sDGt~~ 310 (566)
T TIGR00456 259 GESVKNGMVPKVLEDLKEKGLVVED-GALWLDLTL---FGD----------------------KDKDRVLQK--SDGTYL 310 (566)
T ss_pred ccccccccHHHHHHHHHHCCCEEEc-CCEEEEccc---ccC----------------------CCCCeEEEE--CCCCce
Confidence 3334455688999999999999977 777775432 110 001222322 355544
Q ss_pred ccCCCCCCCCchhhHHHHHHHhh-cCCCeeEEEecccCccccchH---HHHHHhhccCCCCccEEEEeeeeeeCCccccc
Q 012397 210 WDSPWGPGRPGWHIECSAMSAHY-LSSKFDIHGGGIDLIFPHHEN---EIAQSCAACQDSNVSYWMHNGHVTNNNEKMSK 285 (464)
Q Consensus 210 ~~~~wg~~~P~w~~~~~~~~~~~-~~~~~~i~~~G~D~~~~h~~~---~~a~~~a~~~~~~~~~~~~~~~v~~~G~KmSk 285 (464)
|... .++. ...++ -+.+..|++.|.| |+.. ..+.+++++.+++.++ .|++|.+++|.||||
T Consensus 311 Y~t~--------DiA~--~~~k~~~~~d~iI~V~g~~----q~~h~~~v~~~l~~lG~~~~~~l-~h~~~~~V~~~kmSk 375 (566)
T TIGR00456 311 YLTR--------DIAY--HLDKLERGFDKMIYVWGSD----HHLHIAQFFAILEKLGFYKKKEL-IHLNFGMVPLGSMKT 375 (566)
T ss_pred echh--------hHHH--HHHHHhcCCCEEEEEecCc----HHHHHHHHHHHHHHcCCCCCCce-EEEEEEEEECCCCCc
Confidence 3220 1111 11111 1445778999999 5432 2344555665555555 678999999999999
Q ss_pred ccCCccCHH-----------------------HHHHhcCchhHHHHHhhcCCCCccCCCHHHHHHHHH-HHHHHHHHHHH
Q 012397 286 SLGNFFTIR-----------------------QITERYHPLALRHFLISAHYRSPLNYSVLQLDSASD-AVFYIYQTLQD 341 (464)
Q Consensus 286 s~gn~i~~~-----------------------dll~~~~~dalR~~ll~~~~~~~~~f~~~~~~~~~~-~l~~l~~~~~~ 341 (464)
|+||+|++. ++++.+|.|++||++++..+.++++||++.+.+..+ ...+++|+++|
T Consensus 376 r~Gn~V~~~dll~~~~~ra~~~i~~~~~~~~~~~~~~vg~dAvRy~~L~~~~~~d~~Fd~d~~~~~~~n~~~yiqYa~aR 455 (566)
T TIGR00456 376 RRGNVISLDNLLDEASKRAGNVITIKNDLEEEDVADAVGIGAVRYFDLSQNRETHYVFDWDAMLSFEGNTAPYIQYAHAR 455 (566)
T ss_pred cCCceeeHHHHHHHHHHHHHHHHHhcCCccHHHHHHHhcccceeeHHhhcCCCCCceecHHHHhccCCCCchhHHHHHHH
Confidence 999999998 677778999999999999889999999999877654 45699999999
Q ss_pred HHHhcCccccCCC---------ccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhcccCch-
Q 012397 342 CEVALSPFQEHGK---------TARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPK- 411 (464)
Q Consensus 342 ~~~~l~~~~~~~~---------~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~~~~~~~- 411 (464)
++++++++..... .++.++.|+..+.++++.+.+++ ++++++.++.. ++++++.+|+||+.|++....
T Consensus 456 ~~SIlrK~~~~~~~~~~~~~~~~~~~e~~Ll~~l~~~~~~v~~a~-~~~~p~~~~~~-l~~La~~~N~yy~~~~Vl~~~~ 533 (566)
T TIGR00456 456 ICSILRKADIDGEKLIADDFSLLEEKEKELLKLLLQFPDVLEEAA-EELEPHVLTNY-LYELASLFSSFYKACPVLDAEN 533 (566)
T ss_pred HHHHHHhcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHH-HhCCcHHHHHH-HHHHHHHHHHHHhcCccCCCCC
Confidence 9999987742111 13346789999999999999999 99999888888 999999999999999887642
Q ss_pred -hhhhhHHHHHHHHHHHHHHHHHhhccCCC
Q 012397 412 -QQQLSLIESLRKIENEVKEVLRILGLLPP 440 (464)
Q Consensus 412 -~~~~~r~~~~~~~~~~l~~~l~lLgi~p~ 440 (464)
....+|+.++.++..+|++++.||||.|+
T Consensus 534 ~~~~~~RL~L~~a~~~vl~~gL~lLGI~~~ 563 (566)
T TIGR00456 534 ENLAAARLALLKATRQTLKNGLQLLGIEPP 563 (566)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 23579999999999999999999999886
No 55
>PLN02286 arginine-tRNA ligase
Probab=100.00 E-value=1.7e-40 Score=350.21 Aligned_cols=357 Identities=11% Similarity=0.045 Sum_probs=264.4
Q ss_pred CCcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHH---HH-cC-------CC----
Q 012397 37 RGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRA---ND-LG-------EN---- 101 (464)
Q Consensus 37 ~~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a---~~-~g-------~~---- 101 (464)
+++|.|..+||||+|||||||+|++++||+|+|+|+++|++|...++++|+|..+-.-+ .+ .| .+
T Consensus 116 ~~~v~VEfsSpNp~kplHvGHlRsaiiGdsLaril~~~G~~V~r~nyinD~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l 195 (576)
T PLN02286 116 VKRAVVDFSSPNIAKEMHVGHLRSTIIGDTLARMLEFSGVEVLRRNHVGDWGTQFGMLIEHLFEKFPNWESVSDQAIGDL 195 (576)
T ss_pred CceEEEEecCCCCCCCCccccccchhhHHHHHHHHHHcCCceEEEEeecchHHHHHHHHHHHHHhcCcccccCcccHHHH
Confidence 47899999999999999999999999999999999999999999999999997542211 01 01 00
Q ss_pred --------------------------------------hHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchhHHHHHHHHH
Q 012397 102 --------------------------------------PLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMIT 143 (464)
Q Consensus 102 --------------------------------------~~~~~~~~~~~~~~~l~~lgi~~~~~~~r~s~~~~~~~~~~~ 143 (464)
|+.+++.....|.+.+++|||.+ +. ...|.+.+.+.++++
T Consensus 196 ~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~lw~~~~~~~~~~~~~~y~~l~V~f-d~-~ges~y~~~~~~vi~ 273 (576)
T PLN02286 196 QEFYKAAKKRFDEDEEFKARAQQAVVRLQGGDPEYRAAWAKICEISRREFEKVYQRLRVEL-EE-KGESFYNPYIPGVIE 273 (576)
T ss_pred HHHHHHhhhhccCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCee-ee-cCchhhhhhHHHHHH
Confidence 23555666677888999999996 44 355567777899999
Q ss_pred HHHHCCceEeecCcEEEcCCCCCCCCCCCCccccccccCCCcccCCcccCcccccccccccCCCCcccCCCCCCCCchhh
Q 012397 144 QIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHI 223 (464)
Q Consensus 144 ~L~~~G~~y~~~~~~~~~~~~~~~~g~l~~~~~~~~~~g~~~~~~~~k~~~~d~~~w~~~~~g~~~~~~~wg~~~P~w~~ 223 (464)
+|.++|++|+.++..|.+... .+ .+..+- .++|..++... .+
T Consensus 274 ~L~~~g~~~e~dGa~~v~l~~---~~-------------------------~~~vl~--ksDGt~tY~t~--------DI 315 (576)
T PLN02286 274 ELESKGLVVESDGARVIFVEG---FD-------------------------IPLIVV--KSDGGFNYAST--------DL 315 (576)
T ss_pred HHHHCCCEEeeCCceEeeccC---CC-------------------------CceEEE--ECCCchhhHHH--------HH
Confidence 999999999888877764311 00 011121 12443322110 11
Q ss_pred HHHHHHHhhcCCCeeEEEecccCccccchH---HHHHHhhccCC-C--CccE-EEEeeeee-eCCcccccccCCccCHHH
Q 012397 224 ECSAMSAHYLSSKFDIHGGGIDLIFPHHEN---EIAQSCAACQD-S--NVSY-WMHNGHVT-NNNEKMSKSLGNFFTIRQ 295 (464)
Q Consensus 224 ~~~~~~~~~~~~~~~i~~~G~D~~~~h~~~---~~a~~~a~~~~-~--~~~~-~~~~~~v~-~~G~KmSks~gn~i~~~d 295 (464)
++.....+.++.+..|++.|.| |+.. ..+.+.+++.. . ..++ .+..|+|+ .+|+|||||+|++|+++|
T Consensus 316 A~~~~k~~~~~~d~~IyVvg~~----q~~hf~~v~~~l~~lG~~~~~~~~~l~h~~~g~V~~~~g~kmStR~G~~v~L~d 391 (576)
T PLN02286 316 AALWYRLNEEKAEWIIYVTDVG----QQQHFDMVFKAAKRAGWLPEDTYPRLEHVGFGLVLGEDGKRFRTRSGEVVRLVD 391 (576)
T ss_pred HHHHHHHhccCCCEEEEEEeCc----HHHHHHHHHHHHHHcCCCccccCCceEEEeeccEECCCCCcccCCCCCeeEHHH
Confidence 1111111123445678889999 5432 23444445532 2 1122 23357886 488899999999999999
Q ss_pred HHHh-----------------------------cCchhHHHHHhhcCCCCccCCCHHHHHHHHHH-HHHHHHHHHHHHHh
Q 012397 296 ITER-----------------------------YHPLALRHFLISAHYRSPLNYSVLQLDSASDA-VFYIYQTLQDCEVA 345 (464)
Q Consensus 296 ll~~-----------------------------~~~dalR~~ll~~~~~~~~~f~~~~~~~~~~~-l~~l~~~~~~~~~~ 345 (464)
++++ +|.+|+||++++.++.++++|||+.+.+..++ -.|+||+++|++|+
T Consensus 392 lldea~~~a~~~~~~~~~~~~~~~~~~~~~a~~vg~~Airy~~L~~~~~~~~~Fd~d~~l~~~g~t~pYlQYahAR~~SI 471 (576)
T PLN02286 392 LLDEAKSRSKAALIERGKDSEWTPEELEQAAEAVGYGAVKYADLKNNRLTNYTFSFDQMLDLKGNTAVYLLYAHARICSI 471 (576)
T ss_pred HHHHHHHHHHHHHHhccCccccchhhHHHHHHHhhhhhhhhhhhhcCCCCCCccCHHHHHhhcCCChHHHHHHHHHHHHH
Confidence 9993 56899999999999999999999998877643 33999999999999
Q ss_pred cCccccCC----------CccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhcccCchhhhh
Q 012397 346 LSPFQEHG----------KTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQL 415 (464)
Q Consensus 346 l~~~~~~~----------~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~~~~~~~~~~~ 415 (464)
++++.... ..++.++.|+..|.++++.+.++. +++. |+.|+.||+++++.||+||+.|++...... .
T Consensus 472 lrKa~~~~~~~~~~~~~~l~~~~E~~L~~~l~~fp~vv~~a~-~~~~-P~~l~~Yl~~LA~~F~~fY~~~~Vl~~~~~-~ 548 (576)
T PLN02286 472 IRKSGKDIDELKKTGKIVLDHPDERALGLHLLQFPEVVEEAC-TDLL-PNRLCEYLYNLSEKFTKFYSNCKVNGSEEE-T 548 (576)
T ss_pred HHhccCccccccccccccCCCHHHHHHHHHHHHHHHHHHHHH-HhcC-chHHHHHHHHHHHHHHHHHhcCccCCCCch-h
Confidence 98874210 114566889999999999999999 7776 777788899999999999999988753333 7
Q ss_pred hHHHHHHHHHHHHHHHHHhhccCCC
Q 012397 416 SLIESLRKIENEVKEVLRILGLLPP 440 (464)
Q Consensus 416 ~r~~~~~~~~~~l~~~l~lLgi~p~ 440 (464)
+|+.++.++..+|++++.||||.|+
T Consensus 549 aRL~L~~a~~~vL~~gL~LLGI~~~ 573 (576)
T PLN02286 549 SRLLLCEATAIVMRKCFHLLGITPL 573 (576)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 8999999999999999999999887
No 56
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=8e-42 Score=340.17 Aligned_cols=277 Identities=21% Similarity=0.218 Sum_probs=200.5
Q ss_pred cceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHc-CCCh---------------
Q 012397 39 KVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDL-GENP--------------- 102 (464)
Q Consensus 39 ~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~-g~~~--------------- 102 (464)
+..+..++|+|||++||||+|+.+++|+++|++|++|++|.+++|+|+||.+|+.++.+. |.++
T Consensus 2 ~f~i~~~pP~vnG~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~~ie~ka~k~lg~~~~~~~~~~~~~~~~~~ 81 (338)
T cd00818 2 EFVFHDGPPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKKDIEKMGIAEFNAK 81 (338)
T ss_pred CeEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCCchhHHHHHHHhCCCCCcchhhcCHHHHHHH
Confidence 456777889999999999999999999999999999999999999999999999998875 7654
Q ss_pred -HHHHHHHHHHHHHHHHhcCCCCC-C--CCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCC--CCCC-CCCCC--
Q 012397 103 -LSLSNRYCQEYLVDMADLQCLPP-T--YQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK--SPNY-GRLSG-- 173 (464)
Q Consensus 103 -~~~~~~~~~~~~~~l~~lgi~~~-~--~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~--~~~~-g~l~~-- 173 (464)
++++++|.+.|.+++++|||+.+ + ..+..++|.+.++++|.+|+++|++|++++.++|.+.- +.++ =.++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~lgi~~~~~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v~~~v~~~~~~qwf~~l~~~~ 161 (338)
T cd00818 82 CREFALRYVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVWWVFKQLHEKGLLYRGYKVVPWPLIYRATPQWFIRVTKIK 161 (338)
T ss_pred HHHHHHHHHHHHHHHHHHhCceecCCCCeECCCHHHHHHHHHHHHHHHHCCCEeccCCeeeeEEEEEecCeEEEEcHHHH
Confidence 79999999999999999999642 2 23344489999999999999999999999999993210 0000 00110
Q ss_pred ccccccccCCCcccCCcccCcccccccc-cccCCCCcccCCCCCCCCchhhH--------------------H-HHHHH-
Q 012397 174 QRLENNRAGERVAVDSRKRNPADFALWK-AAKAGEPSWDSPWGPGRPGWHIE--------------------C-SAMSA- 230 (464)
Q Consensus 174 ~~~~~~~~g~~~~~~~~k~~~~d~~~w~-~~~~g~~~~~~~wg~~~P~w~~~--------------------~-~~~~~- 230 (464)
..+.+..+...+..+..+. .+.-|. ...+-.++|+..||++.|.|.++ . ..++.
T Consensus 162 ~~l~~~~~~~~~~P~~~~~---~~~~~l~~l~dw~iSR~~~WGip~P~~~~~~~~~~~~~~~~~v~~vWfda~~~~~~~~ 238 (338)
T cd00818 162 DRLLEANDKVNWIPEWVKN---RFGNWLENRRDWCISRQRYWGTPIPVWYCEDCGEVLVRRVPDVLDVWFDSGSMPYAQL 238 (338)
T ss_pred HHHHHHHhcCcEECHHHHH---HHHHHHhcchhcceeeecccCceeeEEEecCCCeEEEecCCceEEEEEeCCCCHHHHc
Confidence 0011111110000000000 011121 12344567888999999865322 1 01111
Q ss_pred hh------c--CCCeeEEEecccCcc--ccchHHHHHHhhccCCCCccEEEEeeeeee-CCcccccccCCccCHHHHHHh
Q 012397 231 HY------L--SSKFDIHGGGIDLIF--PHHENEIAQSCAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITER 299 (464)
Q Consensus 231 ~~------~--~~~~~i~~~G~D~~~--~h~~~~~a~~~a~~~~~~~~~~~~~~~v~~-~G~KmSks~gn~i~~~dll~~ 299 (464)
.+ + .++.++++.|+|+++ +|...+++.. +.+..+|.++++ ||+++. +|+|||||+||+|++.|+++.
T Consensus 239 ~~~~~~~~~~~~~p~d~~~~GkDii~~wf~~~~~~~~~-~~~~~p~~~~~~-hg~~~~~~g~KmSKS~gn~i~~~~~~~~ 316 (338)
T cd00818 239 HYPFENEDFEELFPADFILEGSDQTRGWFYSLLLLSTA-LFGKAPYKNVIV-HGFVLDEDGRKMSKSLGNYVDPQEVVDK 316 (338)
T ss_pred CCCCcchhhhccCCCeEEeecchHHhHHHHHHHHHHHH-hcCCCccceEEE-EeeEECCCCCCCCCCCCCcCCHHHHHHH
Confidence 00 1 147899999999997 7777777654 334567788877 588876 899999999999999999999
Q ss_pred cCchhHHHHHhhc-CCCCccCC
Q 012397 300 YHPLALRHFLISA-HYRSPLNY 320 (464)
Q Consensus 300 ~~~dalR~~ll~~-~~~~~~~f 320 (464)
+|+|++|||+++. +.++|++|
T Consensus 317 ~~~D~~R~~l~~~~~~~~d~~~ 338 (338)
T cd00818 317 YGADALRLWVASSDVYAEDLRF 338 (338)
T ss_pred cCcHHHHHHHHhCCCccCCCCC
Confidence 9999999999987 78898876
No 57
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.3e-39 Score=333.02 Aligned_cols=407 Identities=16% Similarity=0.172 Sum_probs=293.7
Q ss_pred CCcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHH----HHHHHcC-CC----------
Q 012397 37 RGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKII----RRANDLG-EN---------- 101 (464)
Q Consensus 37 ~~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~----~~a~~~g-~~---------- 101 (464)
.+...|++++||++|.||||||-+..+-|+++|+.|+.|+.|.++.|+|..|-.++ ....+.| ++
T Consensus 74 ~~~f~i~~PPPNVTG~LHiGHALt~aiqD~i~R~~rm~G~~vlw~PG~DHAGIATQ~VVEK~l~~~~~~~Rh~lgRe~F~ 153 (995)
T KOG0432|consen 74 GGVFVIPLPPPNVTGSLHIGHALTVAIQDALARYNRMHGYQVLWVPGTDHAGIATQVVVEKQLAREGGKTRHDLGREEFL 153 (995)
T ss_pred CCcceeecCCCCcccccchhHHHHHHHHHHHHHHHHhcCCeeeecCCccccchhHHHHHHHHHHHhcCcchhhcCHHHHH
Confidence 46778999999999999999999999999999999999999999999999985332 2222222 32
Q ss_pred --hHHHHHHHHHHHHHHHHhcCCCCC---CCCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCC------------
Q 012397 102 --PLSLSNRYCQEYLVDMADLQCLPP---TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK------------ 164 (464)
Q Consensus 102 --~~~~~~~~~~~~~~~l~~lgi~~~---~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~------------ 164 (464)
.++|-++|.+.|.+.+++||.+.+ ..|+.....-+.+.+.|-+|.+.|+||+..+-+.||+.-
T Consensus 154 ~~vw~Wk~e~g~~I~~Qlk~lGas~DW~re~fTmD~~~s~AV~eAFvrL~eeglIyR~~rlVNW~~~L~saiSdiEVe~~ 233 (995)
T KOG0432|consen 154 KEVWEWKEEYGGRIYNQLKRLGASLDWDREAFTMDPKLSRAVTEAFVRLHEEGLIYRANRLVNWCPALRSAISDIEVESV 233 (995)
T ss_pred HHHHHHHHHhCccHHHHHHHhcCcccccHhhcccCHHHHHHHHHHHHHHHhcCceEecCceeeechhHHhhhhhheecce
Confidence 588999999999999999999852 123433355677999999999999999999888888651
Q ss_pred ---------CC------------------------------------------------CCCCC---------CCc----
Q 012397 165 ---------SP------------------------------------------------NYGRL---------SGQ---- 174 (464)
Q Consensus 165 ---------~~------------------------------------------------~~g~l---------~~~---- 174 (464)
-| +|..+ .++
T Consensus 234 ei~~~t~l~vpGyd~~VeFG~L~~faY~v~gs~~~i~VaTTRpET~lGDvAvAVhP~D~RYk~lhGk~~~hP~~~r~lPi 313 (995)
T KOG0432|consen 234 EIPGRTLLSVPGYDTKVEFGVLYSFAYPVEGSDEEIVVATTRPETILGDVAVAVHPDDDRYKHLHGKFVKHPFTGRKLPI 313 (995)
T ss_pred ecCCCceEecCCCCcceeeeeeeEEEEeccCCCCeEEEecCCccccccceeEEeCCCCcccccccCceeecCCCCCccce
Confidence 01 11000 000
Q ss_pred ---------------------cccccccCCCcccC-----------------------------------------Cccc
Q 012397 175 ---------------------RLENNRAGERVAVD-----------------------------------------SRKR 192 (464)
Q Consensus 175 ---------------------~~~~~~~g~~~~~~-----------------------------------------~~k~ 192 (464)
+..+++-|.|..++ ..+.
T Consensus 314 I~D~~Vd~~fGTGaVKITPaHd~nDyEvgkRh~L~~~ni~~~dG~l~~~~gef~Gm~RFeAR~kvv~~L~e~gL~~g~~~ 393 (995)
T KOG0432|consen 314 ICDIAVDMEFGTGAVKITPAHDPNDYEVGKRHNLEFINIFTDDGLLNNVCGEFKGMKRFEAREKVVEKLKELGLYVGKEN 393 (995)
T ss_pred eecccccccccccceEecCCCChhHHHHHHhcCCCceeEEcCCCceeccchhccCcHHHHHHHHHHHHHHHhhhhhccCC
Confidence 00000000000000 0000
Q ss_pred Cc---------ccccc------c----------------------------------cc-ccCCCCcccCCCCCCCCchh
Q 012397 193 NP---------ADFAL------W----------------------------------KA-AKAGEPSWDSPWGPGRPGWH 222 (464)
Q Consensus 193 ~~---------~d~~~------w----------------------------------~~-~~~g~~~~~~~wg~~~P~w~ 222 (464)
+| .|.+- | .. ..+..++|+.+||..+|+|+
T Consensus 394 h~mvlpiCSRsgDVIEpllkpQW~v~c~ema~~A~~av~sG~L~i~P~~~~k~w~~W~~~i~DWCiSRQLWWGHrIPAy~ 473 (995)
T KOG0432|consen 394 HPMVLPICSRSGDVIEPLLKPQWFVSCKEMAKKALKAVESGKLEILPEFHEKEWYRWLENIRDWCISRQLWWGHRIPAYF 473 (995)
T ss_pred CceeccccCCCCCcccccccchheeehHHHHHHHHHHHhcCCeEECchHHHHHHHHHHhhccccchhhhhhhccccceee
Confidence 11 12210 1 00 01223566789999999876
Q ss_pred hHH-----------------HH---HHHh----------------------------hcCC-----------CeeEEEec
Q 012397 223 IEC-----------------SA---MSAH----------------------------YLSS-----------KFDIHGGG 243 (464)
Q Consensus 223 ~~~-----------------~~---~~~~----------------------------~~~~-----------~~~i~~~G 243 (464)
+.. .+ ...+ .+|| |.++.=.|
T Consensus 474 v~~~~~~~ee~~WvvarseeeA~ekaa~k~g~~~~~~L~qDpDVLDTWFSS~L~PfS~lGWP~~t~d~~~fyP~sllETG 553 (995)
T KOG0432|consen 474 VNLSDGRAEEDYWVVARSEEEAREKAAEKFGPGKEFTLEQDPDVLDTWFSSGLWPFSTLGWPEETKDFKNFYPLSLLETG 553 (995)
T ss_pred eecccCCCccceeEEeCCHHHHHHHHHHHhCCcccceeecCccHHHhhhhcccccchhcCCccccccHHhcCCchhhhcC
Confidence 410 00 0000 1233 34456669
Q ss_pred ccCccccchHHHHHHhhcc----C-CCCccEEEEeeeeee-CCcccccccCCccCHHHHHH-------------------
Q 012397 244 IDLIFPHHENEIAQSCAAC----Q-DSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITE------------------- 298 (464)
Q Consensus 244 ~D~~~~h~~~~~a~~~a~~----~-~~~~~~~~~~~~v~~-~G~KmSks~gn~i~~~dll~------------------- 298 (464)
.|++|| |+|++.+++ + -||.++++ |++|.+ .|+|||||+||||+|.|+++
T Consensus 554 ~DILfF----WVaRMvmLg~kLtG~lPF~~V~L-H~mVRDa~GRKMSKSLGNVIDPlDVI~Gisle~L~~~L~~gNLdp~ 628 (995)
T KOG0432|consen 554 HDILFF----WVARMVMLGLKLTGELPFKEVLL-HGLVRDAHGRKMSKSLGNVIDPLDVIDGISLEKLHAKLLSGNLDPR 628 (995)
T ss_pred chHHHH----HHHHHHHhhhhhcCCCCchheee-chhhccccccccchhhccccCHHHHhccccHHHHHHHHHcCCCCHH
Confidence 998777 666666554 3 38888877 589998 99999999999999999997
Q ss_pred -----------hc-------CchhHHHHHhhc-CCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcc-ccCC-----
Q 012397 299 -----------RY-------HPLALRHFLISA-HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPF-QEHG----- 353 (464)
Q Consensus 299 -----------~~-------~~dalR~~ll~~-~~~~~~~f~~~~~~~~~~~l~~l~~~~~~~~~~l~~~-~~~~----- 353 (464)
.| |.|||||.|++. .-++|+++|...+...+...++|||+.+++...+.+. ....
T Consensus 629 Ev~~a~~gq~kdFPnGIpeCGtDALRFaL~s~~~~~~dInLDv~rv~g~r~FcNKlWNa~rF~l~~lg~~~~p~~~~~~~ 708 (995)
T KOG0432|consen 629 EVEKAKKGQKKDFPNGIPECGTDALRFALCSYTTQGRDINLDVLRVEGYRHFCNKLWNATRFALQRLGENFVPSPTEDLS 708 (995)
T ss_pred HHHHHHHHHHhhcCCCCcccchHHHHHHHHHccccCccccccHHHHhhHHHHHHHHHHHHHHHHHhcccCCCCCcccccC
Confidence 23 999999999986 7789999999999999999999999999988776542 1111
Q ss_pred -CccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHH--HHHHHHhhhhcccCchhhhhhHHHHHHHHHHHHHH
Q 012397 354 -KTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDAL--KFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKE 430 (464)
Q Consensus 354 -~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~--~~~n~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~ 430 (464)
.....|+|++.+|+...+++.+.+ +.+++..|... +..|. ..+.-|++..+|.........+....++++.++.+
T Consensus 709 ~~~~~~d~WIlsrL~~av~~~~~~~-~~~~f~~at~a-~~~Fwl~~lCDVYlE~~Kp~l~~~~~~~~~~a~~vL~~~ld~ 786 (995)
T KOG0432|consen 709 GNESLVDEWILSRLAEAVEEVNESL-EARNFHLATSA-LYAFWLYDLCDVYLEATKPLLWGDSEALAYEARRVLYRCLDN 786 (995)
T ss_pred CCcchhHHHHHHHHHHHHHHHHhhh-hhhhHHHHHHH-HHHHHHHHHHHHHHHHhhHHhcCCcHHHHHHHHHHHHHHHHH
Confidence 111278999999999999999999 99999999999 99987 36799999998832122233455567889999999
Q ss_pred HHHhhc-cCCCccHHHHHHHhh
Q 012397 431 VLRILG-LLPPGAYSEVKTAFL 451 (464)
Q Consensus 431 ~l~lLg-i~p~~~~e~i~~~l~ 451 (464)
+|++|+ |||+ +||++||+|.
T Consensus 787 gLrll~PfMPF-vtEel~qrlP 807 (995)
T KOG0432|consen 787 GLRLLHPFMPF-ITEELWQRLP 807 (995)
T ss_pred HHHHhcCcccc-cHHHHHHhcc
Confidence 999999 9998 9999999984
No 58
>PLN02959 aminoacyl-tRNA ligase
Probab=100.00 E-value=7e-38 Score=350.17 Aligned_cols=214 Identities=21% Similarity=0.134 Sum_probs=161.2
Q ss_pred CCeeEEEecccCccccchHHHHHHhhccC-CCCccEEEEeeeeeeCCcccccccCCccCHHHHHHhcCchhHHHHHhhc-
Q 012397 235 SKFDIHGGGIDLIFPHHENEIAQSCAACQ-DSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA- 312 (464)
Q Consensus 235 ~~~~i~~~G~D~~~~h~~~~~a~~~a~~~-~~~~~~~~~~~~v~~~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~- 312 (464)
.|+|+++.|+|++++|..+......++.+ .|+++.++.||||+.+|+|||||+||+|+|.|++++||+|++|||+++.
T Consensus 670 yP~Dl~~sG~Dii~~wl~~~l~~~~al~~~~P~p~~v~v~G~V~~~G~KMSKSkGNvI~p~diI~kyGADalRl~la~~~ 749 (1084)
T PLN02959 670 YPFDLRVSGKDLIQNHLTFAIYNHTAIWAEEHWPRGFRCNGHLMLNSEKMSKSTGNFLTLRQAIEEFSADATRFALADAG 749 (1084)
T ss_pred CCCeEEEecccHHHHHHHHHHHHHHHhcCCCCCCceEEEccEEecCCcCccccCCCcCCHHHHHHHhCchHHHHHHhhcC
Confidence 37999999999999999777776777665 4666645668999999999999999999999999999999999999987
Q ss_pred CCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCc---cccCCCccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHH
Q 012397 313 HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSP---FQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTG 389 (464)
Q Consensus 313 ~~~~~~~f~~~~~~~~~~~l~~l~~~~~~~~~~l~~---~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~ 389 (464)
+..+|.+|+++.+.++...+.++... +...+.. ..........|+|++.+++++++++.++| ++++++.|+..
T Consensus 750 ~~~~D~nF~~k~~n~~~~~l~n~~~~---~~~~~~~~~~~~~~~~~~~~D~wils~l~~~i~~v~~a~-e~y~f~~A~~~ 825 (1084)
T PLN02959 750 DGVDDANFVFETANAAILRLTKEIAW---MEEVLAAESSLRTGPPSTYADRVFENEINIAIAETEKNY-EAMMFREALKS 825 (1084)
T ss_pred CccCCCCccHHHHHHHHHHHHHHHHH---HHHhhhhhcccCCcccCCHHHHHHHHHHHHHHHHHHHHH-HcccHHHHHHH
Confidence 77899999998877665555443322 2222211 11111134678999999999999999999 99999999998
Q ss_pred HHHHHHHHHHHHhhhhcccCchhhhhhHHHHHHHHHHHHHHHHHhhc-cCCCccHHHHHHHh-hhhHhHhcCCCC
Q 012397 390 AFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVKTAF-LVLLHVFFDDSP 462 (464)
Q Consensus 390 yl~~l~~~~n~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~l~lLg-i~p~~~~e~i~~~l-~~~~~~~~~~~~ 462 (464)
-.++|.....+|...+. .. .....++..+|..++.+|+ |+|+ +||+||+.| +..-++++..||
T Consensus 826 ~~Yel~~~k~~yr~~~~----~~-----~~~~~~L~~vl~~~l~LLaP~~Pf-iaEEiW~~l~~~~~sI~~~~wP 890 (1084)
T PLN02959 826 GFYDLQAARDEYRLSCG----SG-----GMNRDLVWRFMDVQTRLITPICPH-YAEHVWREILKKEGFAVTAGWP 890 (1084)
T ss_pred HHHHHHHhHHHHhhccc----cc-----hHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHhccCCCCeEEecCCC
Confidence 23334333333321111 00 0224578889999999999 9999 999999999 444467888887
No 59
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.5e-34 Score=289.85 Aligned_cols=402 Identities=18% Similarity=0.182 Sum_probs=280.8
Q ss_pred CcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 012397 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDM 117 (464)
Q Consensus 38 ~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l 117 (464)
++..|..-=|.|+|.|||||.|-++|+|++||+.|++|++|.+..|+|-+|.+.+.+|.+.|+.|.+|+..+.+.+++.+
T Consensus 57 k~KYiLsMFPYPSG~LHiGHvRVYTIsD~laRf~rm~GynVihPMGWDaFGLPAENAAiergv~P~sWT~~NI~~Mk~Ql 136 (876)
T KOG0435|consen 57 KKKYILSMFPYPSGALHIGHVRVYTISDILARFYRMKGYNVIHPMGWDAFGLPAENAAIERGVHPASWTINNIAKMKQQL 136 (876)
T ss_pred CCceEEEecCCCCCcccccceEEEEehHHHHHHHHhcCceeecCCcccccCCchhhHHHhcCCCchhhhHHHHHHHHHHH
Confidence 44455555699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCCCCcc----hhHHHHHHHHHHHHHCCceEeecCcEEEcCCCCC--------------CCCC---------
Q 012397 118 ADLQCLPPTYQPRVS----DHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSP--------------NYGR--------- 170 (464)
Q Consensus 118 ~~lgi~~~~~~~r~s----~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~--------------~~g~--------- 170 (464)
+++|+.+ |....-| +|.+..|.+|.+|.++|++|+.+-.+.||+-.|. +.|.
T Consensus 137 ~~lg~~F-DWdrEiSTC~PdYYKWTQwiFlkLfe~GLAYq~Ea~VNWDPvD~TVLAnEQVD~~G~SWRSGA~VEkK~LrQ 215 (876)
T KOG0435|consen 137 KSLGISF-DWDREISTCEPDYYKWTQWIFLKLFEKGLAYQAEAEVNWDPVDKTVLANEQVDADGCSWRSGAKVEKKKLRQ 215 (876)
T ss_pred HHcCccc-ccccccccCCcchhHHHHHHHHHHHHhhhhhccccccccCcccceeecchhhcccCccccccchhhHHHHHH
Confidence 9999985 4433222 8999999999999999999999988988876321 0110
Q ss_pred ---------------------------------------------CCC----ccc-------ccc---------------
Q 012397 171 ---------------------------------------------LSG----QRL-------ENN--------------- 179 (464)
Q Consensus 171 ---------------------------------------------l~~----~~~-------~~~--------------- 179 (464)
+.+ +.+ +.+
T Consensus 216 WfikttaYAk~L~d~L~~L~~W~~vk~mQrnWIG~~~G~el~F~ll~~~~~de~ltv~Tt~Petl~~~~f~vl~~~H~L~ 295 (876)
T KOG0435|consen 216 WFIKTTAYAKRLLDGLETLPEWPEVKDMQRNWIGRCDGAELMFPLLDDGSNDEILTVYTTRPETLFGASFLVLAPSHSLL 295 (876)
T ss_pred HHhhhhHHHHHHHHHHHhhhhhhhHHHHHHhhcccccceEEEEEeccCCCCCceEEEEecCchhhccceEEEEcCCchhh
Confidence 000 000 000
Q ss_pred ----------c-------------------cCCCccc-------CCc---------ccCcccccccccc-----------
Q 012397 180 ----------R-------------------AGERVAV-------DSR---------KRNPADFALWKAA----------- 203 (464)
Q Consensus 180 ----------~-------------------~g~~~~~-------~~~---------k~~~~d~~~w~~~----------- 203 (464)
. .|..+.+ .++ -...+|+.+|.+.
T Consensus 296 ~~~~~lkefl~~~~l~~Kg~~lp~~A~Np~tg~~iPv~~a~~v~~~~gt~a~m~~P~hd~rD~ela~~~~~~~~~~~~~~ 375 (876)
T KOG0435|consen 296 DKDSSLKEFLSKSDLPQKGVQLPCQAKNPVTGRAIPVVVADYVLDPYGTGAVMGAPGHDQRDKELAQKIGIKWIICIEVI 375 (876)
T ss_pred hhhchHHHhhhhhhccccCcccceeeccCCCCceeeEEEechhccCCCcceeeeccCcccchhHHHhcccceeEEEEeee
Confidence 0 0000000 000 0011344444330
Q ss_pred --------------------------------------------cCCCCcccCCCCCCCCchhh----------------
Q 012397 204 --------------------------------------------KAGEPSWDSPWGPGRPGWHI---------------- 223 (464)
Q Consensus 204 --------------------------------------------~~g~~~~~~~wg~~~P~w~~---------------- 223 (464)
++..++|+..||.++|-=|.
T Consensus 376 f~~~~K~~~~~~~tn~~~~q~a~~~l~~~~~~~g~g~~~vs~kLkDWLiSRQRyWGTPIPivhc~~cG~vpVpes~LPV~ 455 (876)
T KOG0435|consen 376 FTNFGKKNEQKAFTNLDIRQNAALKLFQFAERKGVGGYVVSYKLKDWLISRQRYWGTPIPIVHCDDCGAVPVPESELPVT 455 (876)
T ss_pred ecchhhhhccccccchhHHHHHHHHHHHHHHhcCCCcceecchhhhhhhhhhhccCCCcceEEcCCCCcccCcHHHCCcc
Confidence 00112445579988873110
Q ss_pred -----------------------HHH-----H------H------HHhhc---C----------------CCeeEEEecc
Q 012397 224 -----------------------ECS-----A------M------SAHYL---S----------------SKFDIHGGGI 244 (464)
Q Consensus 224 -----------------------~~~-----~------~------~~~~~---~----------------~~~~i~~~G~ 244 (464)
.|. + | ++.|| + -|+|++++|+
T Consensus 456 LP~l~~~~~kG~Pls~~~e~vn~~cP~cg~pAkRETDTMDTFvDSsWYYlRylDpkN~e~~~d~a~a~k~MPVDvYIGG~ 535 (876)
T KOG0435|consen 456 LPELNDFTPKGPPLSKADEWVNVDCPRCGEPAKRETDTMDTFVDSSWYYLRYLDPKNPEEPFDKAKAKKNMPVDVYIGGK 535 (876)
T ss_pred cccccccCCCCCcccchhhheeccCccCCCcccccccccchhhccceeeEeecCCCCcccccchhhhhccCceeEEeccH
Confidence 000 0 0 01111 1 2899999999
Q ss_pred cCccccchHHHHHHhhcc-------CCCCccEEEEee------------------------------eeee-CC------
Q 012397 245 DLIFPHHENEIAQSCAAC-------QDSNVSYWMHNG------------------------------HVTN-NN------ 280 (464)
Q Consensus 245 D~~~~h~~~~~a~~~a~~-------~~~~~~~~~~~~------------------------------~v~~-~G------ 280 (464)
.|...|..+-.....-+. ..||..+ +.+| +++- ++
T Consensus 536 EHAvlHLlYaRF~~kFl~di~~~~t~EPF~~L-i~QGmV~G~tf~~~~sG~yl~~~ev~~~nd~~~~~vlk~~~e~~v~t 614 (876)
T KOG0435|consen 536 EHAVLHLLYARFIAKFLKDIGVVSTAEPFTKL-ITQGMVRGKTFRTKESGKYLGPEEVQQVNDHQNKFVLKNDKEVVVVT 614 (876)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCcCCCcHHHH-HhhhcccceEEecCCCCccCCHHHhhhhcCCcceeEecCCCcceeee
Confidence 988877765433332221 1233222 2122 1111 22
Q ss_pred -cccccccCCccCHHHHHHhcCchhHHHHHhhc-CCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHh--cCccccCCCc-
Q 012397 281 -EKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVA--LSPFQEHGKT- 355 (464)
Q Consensus 281 -~KmSks~gn~i~~~dll~~~~~dalR~~ll~~-~~~~~~~f~~~~~~~~~~~l~~l~~~~~~~~~~--l~~~~~~~~~- 355 (464)
+|||||++|+|+|.|++.+||+|++|++++-. ++.++++|+.+.+....+.+.++|.....+.+. .++..+....
T Consensus 615 ~eKMSKSK~NGVdP~~~v~~yG~D~tRl~ilf~ap~~~~~nW~es~i~Gi~rwl~riw~l~~~~~~ar~~g~~~d~~~~t 694 (876)
T KOG0435|consen 615 YEKMSKSKHNGVDPADVVLEYGVDTTRLYILFAAPPRDPINWNESAIPGIKRWLQRIWALVSQILQARDDGKAKDLKKLT 694 (876)
T ss_pred HHHhhhcccCCCCHHHHHHHhCchHHHHHHHhhCCcccccccccccchhHHHHHHHHHHHHHHHHHHHhcCCcccccccc
Confidence 49999999999999999999999999999986 999999999999999999999999987766544 2222211111
Q ss_pred ---cCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhcccCchhhhhhHHHHHHHHHHHHHHHH
Q 012397 356 ---ARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVL 432 (464)
Q Consensus 356 ---~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~l 432 (464)
....+.+.+..+.++..+++.+...+.++.||.. ++.|.+.+.+-+.....|.. .....|..+.
T Consensus 695 d~~dae~~kl~~~~n~fi~~vt~~~e~~~slNtaIS~-~m~ltN~l~~a~k~~~~h~~------------~~~~al~~lv 761 (876)
T KOG0435|consen 695 DGFDAETRKLKETYNFFIKQVTEHYEVLFSLNTAISD-MMGLTNALKKALKIVLVHSP------------EFERALEALV 761 (876)
T ss_pred cccchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhhcCh------------HHHHHHHHHH
Confidence 2234688999999999999999667779999999 99999988777766655542 3334566677
Q ss_pred Hhhc-cCCCccHHHHHHHhhhhHh
Q 012397 433 RILG-LLPPGAYSEVKTAFLVLLH 455 (464)
Q Consensus 433 ~lLg-i~p~~~~e~i~~~l~~~~~ 455 (464)
.+|. +.|+ .|+|+|..|+.-.+
T Consensus 762 ~mlaP~aPh-~asE~Ws~l~~~~~ 784 (876)
T KOG0435|consen 762 IMLAPFAPH-VASELWSALANDLS 784 (876)
T ss_pred HHHhccCch-hHHHHHHHHhcccc
Confidence 7888 8899 99999999984443
No 60
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=100.00 E-value=1e-34 Score=286.40 Aligned_cols=273 Identities=15% Similarity=0.144 Sum_probs=184.1
Q ss_pred cceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCcccc------------------HHHHHHHHHcCC
Q 012397 39 KVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVD------------------DKIIRRANDLGE 100 (464)
Q Consensus 39 ~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g------------------~~i~~~a~~~g~ 100 (464)
...++.||++|||.+||||+|+++++|+++|++|++|++|.+++++|||| .++...+...|.
T Consensus 19 ~~~~v~tgi~psG~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~~~~~~G~pi~~ip~p~g~ 98 (353)
T cd00674 19 EKYVVASGISPSGHIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPESYEQYIGMPLSSVPDPFGC 98 (353)
T ss_pred CeEEEecCCCCCCCcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhHHHHhcCccchhchhhcCC
Confidence 44677788999999999999999999999999999999999999999994 444444555565
Q ss_pred ChHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchhH--HHHHHHHHHHHHCCceEee--------cCcEEEc-CCCCCCCC
Q 012397 101 NPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHM--EQIKDMITQIINNDCAYVV--------EGDVFFA-VEKSPNYG 169 (464)
Q Consensus 101 ~~~~~~~~~~~~~~~~l~~lgi~~~~~~~r~s~~~--~~~~~~~~~L~~~G~~y~~--------~~~~~~~-~~~~~~~g 169 (464)
.+ +++++|...|.+.++.|||++ +.+.++..+. ...+.++..|.+++.|.+. ..+.|+. ..-|++||
T Consensus 99 ~~-~~~d~~~~~f~~~l~~lgi~~-d~~~~T~~y~~g~~~~~i~~~L~~~~~I~~i~~~~~~~~~~~~~~P~~p~c~~cg 176 (353)
T cd00674 99 CE-SYAEHFERPFEESLEKLGIEV-EFISQSQMYKSGLYDENILIALEKRDEIMAILNEYRGRELQETWYPFMPYCEKCG 176 (353)
T ss_pred CH-HHHHHHHHHHHHHHHHcCCee-eeeecCCchhhchHHHHHHHHHHHCChHHHHHHHhcCCccCCCceeeeeecCCcC
Confidence 55 999999999999999999995 6554444333 4577777777777775322 1233433 23599999
Q ss_pred CCCCccccccc-cCCCcccCCcccCcccccccccc--cCCCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccC
Q 012397 170 RLSGQRLENNR-AGERVAVDSRKRNPADFALWKAA--KAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDL 246 (464)
Q Consensus 170 ~l~~~~~~~~~-~g~~~~~~~~k~~~~d~~~w~~~--~~g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~ 246 (464)
+++ ..+.+.. +..++...+...+. .+... ..|.. +|-..||. .+.++ .+|+.+.|+||
T Consensus 177 ~~~-~~v~~~d~~~~~v~y~c~cG~~----g~~~~~~g~~KL----~Wr~dW~~--------rW~~l--~Vd~E~~GkDh 237 (353)
T cd00674 177 KDT-TTVEAYDAKAGTVTYKCECGHE----ETVDIRTGRGKL----TWRVDWPM--------RWAIL--GVDFEPFGKDH 237 (353)
T ss_pred cce-eEEEEEeCCCCeEEEEcCCCCE----EEEeecCCCccc----CCCCCchh--------hhhhc--CCCEEeeCccc
Confidence 775 3333332 12223332211111 11111 11222 34444332 12334 58999999996
Q ss_pred ccccchH--HHHHHh-hccCCCCccEEEEeeeeeeCCc-ccccccCCccCHHHHHHhcCchhHHHHHhhcC-CCCccCCC
Q 012397 247 IFPHHEN--EIAQSC-AACQDSNVSYWMHNGHVTNNNE-KMSKSLGNFFTIRQITERYHPLALRHFLISAH-YRSPLNYS 321 (464)
Q Consensus 247 ~~~h~~~--~~a~~~-a~~~~~~~~~~~~~~~v~~~G~-KmSks~gn~i~~~dll~~~~~dalR~~ll~~~-~~~~~~f~ 321 (464)
......+ ...++. +++.++|.. +.+||++++|+ |||||+||+|+|.|+++.+++|++||++++.+ ..++++|+
T Consensus 238 ~~~ggs~~~~~~i~~~ilg~~~P~~--~~ye~V~l~gg~KMSKSkGnvI~~~dll~~~~~dalR~~~l~~~~~~~~i~Fd 315 (353)
T cd00674 238 ASAGGSYDTGKEIAREIFGGEPPVP--VMYEFIGLKGGGKMSSSKGNVITPSDWLEVAPPEVLRYLYARRKNPEKHIGFD 315 (353)
T ss_pred cccccHHHHHHHHHHHHhCCCCCeE--EEeeeEEeCCCCccCCCCCCcCCHHHHHHHhChHHHHHHHHhCCCCCCCCCcC
Confidence 5331111 122233 455555543 44699999766 99999999999999999999999999999986 88999999
Q ss_pred HHHHHHHHHHHHHH
Q 012397 322 VLQLDSASDAVFYI 335 (464)
Q Consensus 322 ~~~~~~~~~~l~~l 335 (464)
++ +......+.++
T Consensus 316 ~~-~~~~~dey~r~ 328 (353)
T cd00674 316 LD-ILRLYDEYDRL 328 (353)
T ss_pred hh-HHHHHHHHHHH
Confidence 85 33344443333
No 61
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.1e-33 Score=282.77 Aligned_cols=212 Identities=17% Similarity=0.190 Sum_probs=172.7
Q ss_pred CeeEEEecccCccccchHHHHHHhhccCC-CCccEEEEeeeeee-CCcccccccCCccCHHHHHHh------cCchhHHH
Q 012397 236 KFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITER------YHPLALRH 307 (464)
Q Consensus 236 ~~~i~~~G~D~~~~h~~~~~a~~~a~~~~-~~~~~~~~~~~v~~-~G~KmSks~gn~i~~~dll~~------~~~dalR~ 307 (464)
.+|++..|.|+.+-++-.......|...+ |+..+++ |||.+. +|.|||||.||||+|+.+++. ||+|++||
T Consensus 566 ~aDv~LEG~DQ~rGWFQSsLLTsvA~q~kAPYk~viv-HGFtlDE~G~KMSKSlGNVidP~~v~~G~~k~payGaD~LR~ 644 (937)
T KOG0433|consen 566 VADVYLEGVDQFRGWFQSSLLTSVAVQNKAPYKKVIV-HGFTLDENGNKMSKSLGNVVDPTMVTDGSLKQPAYGADGLRF 644 (937)
T ss_pred ceeeEEecchhcchHHHHHHHHHHHHhccCCchheee-eeeEecCCccchhhcccCcCCHHHHhCCcccCCCccccceee
Confidence 57899999994333322222233454444 6666655 699998 899999999999999999998 99999999
Q ss_pred HHhhcCCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCC------ccCCChhHHHHHHHHHHHHHHHHhccc
Q 012397 308 FLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGK------TARINPAAEDCINKLRDEFHARMSDDL 381 (464)
Q Consensus 308 ~ll~~~~~~~~~f~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~~------~~~~d~~l~~~l~~~~~~v~~~~~~~~ 381 (464)
|++.+....++...+..+.++...+.++.++++++.+.++++..... ..-.|+.++..|.++.+++++.+ ++|
T Consensus 645 WVA~~~~t~d~~iGp~il~qv~e~l~K~R~T~RfllGnl~d~~~~~~~~p~~dl~~iDq~~L~ql~~~~~~i~e~Y-~~Y 723 (937)
T KOG0433|consen 645 WVAGSENTGESKIGPKILDQVDEKLIKFRNTFRFLLGNLQDFDGKQVKFPLKDLRYIDQYMLQQLDAIVKRIIELY-NDY 723 (937)
T ss_pred eeecccccCceecCHHHHHHHHHHHHHHHhHHHHHhhcccccCCccccccchhhhhhhHHHHHHHHHHHHHHHHHH-Hhc
Confidence 99988889999999999999999999999999999999988865421 13468999999999999999999 999
Q ss_pred ChHHHHHHHHHHHHH-HH-HHHhhhhcc--cCchhhhhhHHHHHHHHHHHHHHHHHhhc-cCCCccHHHHHHHhh
Q 012397 382 NTSHILTGAFQDALK-FI-NSSLNMLKK--KQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVKTAFL 451 (464)
Q Consensus 382 ~~~~al~~yl~~l~~-~~-n~~~~~~~~--~~~~~~~~~r~~~~~~~~~~l~~~l~lLg-i~p~~~~e~i~~~l~ 451 (464)
++.+++.. |..|.. .+ |-|++..+. ..+...+.+|+....++.+.+..+..++. |+|+ .+|++||.|.
T Consensus 724 ~f~kVv~~-lq~F~~~~lSa~YfdivKDRLY~~~~~s~~rrs~QttL~h~l~~l~~~iaPIlP~-LaeEvwq~lP 796 (937)
T KOG0433|consen 724 KFRKVVND-LQQFLQRNLSAFYFDIVKDRLYCDKVGSESRRSAQTTLHHLLHNLAHIISPILPH-LAEEVWQHLP 796 (937)
T ss_pred cHHHHHHH-HHHHHHHHhhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHccccHH-HHHHHHHhCC
Confidence 99999999 988875 44 445555443 33223457788888888999999999999 9999 9999999997
No 62
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=9.5e-33 Score=287.25 Aligned_cols=279 Identities=17% Similarity=0.150 Sum_probs=186.1
Q ss_pred cceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccH--HH-------HHHHHHcCCC--------
Q 012397 39 KVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDD--KI-------IRRANDLGEN-------- 101 (464)
Q Consensus 39 ~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~--~i-------~~~a~~~g~~-------- 101 (464)
...++.||++|||.+||||+|+++++|+++|++|.+|++|.+++++||||. || ...++..|++
T Consensus 23 ~~~~~~~g~~psG~~HiG~~~e~~~~d~v~r~lr~~G~~v~~i~~~Dd~d~lRkvp~~~p~~~~~~~~~G~pl~~~p~p~ 102 (510)
T PRK00750 23 PPVVVETGIGPSGLPHIGNFREVARTDMVRRALRDLGIKTRLIFFSDDMDGLRKVPDNVPNQEMLEEYLGKPLTEIPDPF 102 (510)
T ss_pred CcEEEEeCCCCCCCcccccccchhhHHHHHHHHHHcCCcEEEEEEEecCCcccccCCCCCchHHHHHhcCcccccCCCCC
Confidence 347888999999999999999999999999999999999999999999984 33 2344455665
Q ss_pred --hHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchhH--HHHHHHHHHHHHCCceEe------e--cCcEEEcC-CCCCCC
Q 012397 102 --PLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHM--EQIKDMITQIINNDCAYV------V--EGDVFFAV-EKSPNY 168 (464)
Q Consensus 102 --~~~~~~~~~~~~~~~l~~lgi~~~~~~~r~s~~~--~~~~~~~~~L~~~G~~y~------~--~~~~~~~~-~~~~~~ 168 (464)
+++++++|...|.+.++.+||++ +.+.++..+. ...+.+...|.+++.|.+ + ..+.|+.. .-|++|
T Consensus 103 G~~~~~~~~~~~~~~~~~~~~gi~~-d~~~~t~~y~~g~~~~~i~~~l~~~~~i~~il~~~~~~~~~~~~~P~~pic~~c 181 (510)
T PRK00750 103 GCHESYAEHFNAPLREFLDRFGIEY-EFISATECYKSGRYDEAILTALENRDEIMEILLPYLGEERQATYSPFLPICPKC 181 (510)
T ss_pred CCchHHHHHHHHHHHHHHHHcCCce-EEEehhhhhccCchHHHHHHHHHhHHHHHHHHHHhcCCccCCCeeeeeeeCCCC
Confidence 79999999999999999999985 6444433222 223333333333333321 1 12333332 359999
Q ss_pred CCCCCcccccccc-CCCcccCCcccCcccccccccccCCCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCc
Q 012397 169 GRLSGQRLENNRA-GERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLI 247 (464)
Q Consensus 169 g~l~~~~~~~~~~-g~~~~~~~~k~~~~d~~~w~~~~~g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~ 247 (464)
|++....+.+... ..+|.+.+...+. .......|. -..+|-..|| |.|.++ .+|+.+.|+||.
T Consensus 182 g~~~~~~~~~~d~~~~~v~y~~~cG~~----~~~~~~~g~--~KL~Wr~dW~--------~rW~~l--~Vd~e~~GkDh~ 245 (510)
T PRK00750 182 GKVLTTPVISYDAEAGTVTYDCECGHE----GEVPVTGGH--GKLQWKVDWP--------MRWAAL--GVDFEPFGKDHA 245 (510)
T ss_pred CccceEEEEEEeCCCCEEEEEcCCCCE----EEEecCCCC--cccCCCCCcH--------HHHHHc--CCCEEeeCcccC
Confidence 9987654433321 1123332211111 111111111 0123333333 223345 489999999976
Q ss_pred c-ccchHHHHHHh-hccCCCCccEEEEeeeeeeC-CcccccccCCccCHHHHHHhcCchhHHHHHhhc-CCCCccCCCHH
Q 012397 248 F-PHHENEIAQSC-AACQDSNVSYWMHNGHVTNN-NEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVL 323 (464)
Q Consensus 248 ~-~h~~~~~a~~~-a~~~~~~~~~~~~~~~v~~~-G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~-~~~~~~~f~~~ 323 (464)
. .+. ....+.. +++.++|.. +++||++++ |+|||||+||+|++.|+++.+++|++|||++.. ++.++++|++
T Consensus 246 ~~s~~-~~~~i~~~ilg~~~P~~--~~y~~v~~~~G~KMSKSkGN~i~~~d~l~~~~pd~lR~~l~~~~~~~~~~~f~~- 321 (510)
T PRK00750 246 SASYD-TSKKIAREILGGEPPEP--FVYELFLDKKGEKISKSKGNVITIEDWLEYAPPESLRLFMFARPKPAKRLDFDV- 321 (510)
T ss_pred cchHH-HHHHHHHHHcCCCCCee--eeeeeEEeCCCCcccccCCCccCHHHHHHHCCHHHHHHHHHhCCCCCCCCcccH-
Confidence 6 333 2233333 556555544 567999996 999999999999999999999999999888855 8899999998
Q ss_pred HHHHHHHHHHHHHHHH
Q 012397 324 QLDSASDAVFYIYQTL 339 (464)
Q Consensus 324 ~~~~~~~~l~~l~~~~ 339 (464)
+....+.+.++...+
T Consensus 322 -l~~~~dey~rl~~~~ 336 (510)
T PRK00750 322 -IPKLVDEYDRFERKY 336 (510)
T ss_pred -HHHHHHHHHHHHHHH
Confidence 777777666665544
No 63
>KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-31 Score=270.46 Aligned_cols=224 Identities=15% Similarity=0.153 Sum_probs=172.9
Q ss_pred CCeeEEEecccCccccchHHHHHHhhccCC-CCccEEEEeeeeee-CCcccccccCCccCHHHHHHhcCchhHHHHHhhc
Q 012397 235 SKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 312 (464)
Q Consensus 235 ~~~~i~~~G~D~~~~h~~~~~a~~~a~~~~-~~~~~~~~~~~v~~-~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~ 312 (464)
.|.|+...|-|+.+-+..-......+++++ |+.++ +.+|.|+. ||+|||||+.|+.+|..++++||+||+|+||+.+
T Consensus 553 fPadFIaEGlDQTRGWFYTL~VlsT~LF~kppfkNv-IvnGlVLAeDG~KMSKrlkNYPdP~~iinkYGADalRlYLInS 631 (1070)
T KOG0434|consen 553 FPADFIAEGLDQTRGWFYTLLVLSTALFGKPPFKNV-IVNGLVLAEDGKKMSKRLKNYPDPSLIINKYGADALRLYLINS 631 (1070)
T ss_pred CchHhhhhccccccchhhHHHHHHHHHcCCCcchhe-eEeeeEEecccHHHhhhhhcCCCHHHHHHhhcchheeeeeecC
Confidence 477888889995544442223334455554 66777 55899998 9999999999999999999999999999999998
Q ss_pred CC--CCccCCCHHHHHHHHHHH-HHHHHHHHHHHHhcCccccC-----------CCccCCChhHHHHHHHHHHHHHHHHh
Q 012397 313 HY--RSPLNYSVLQLDSASDAV-FYIYQTLQDCEVALSPFQEH-----------GKTARINPAAEDCINKLRDEFHARMS 378 (464)
Q Consensus 313 ~~--~~~~~f~~~~~~~~~~~l-~~l~~~~~~~~~~l~~~~~~-----------~~~~~~d~~l~~~l~~~~~~v~~~~~ 378 (464)
|. ...+.|.++.+......+ --++|++++........... ...+.+|+|+++.+++++.-+++.|
T Consensus 632 PVvraE~LkFkeeGVrevvk~v~lPW~NsyrF~~qn~~~~~~~~g~~f~~~~~~~S~NvmDrWI~a~~qslv~fv~~eM- 710 (1070)
T KOG0434|consen 632 PVVRAENLKFKEEGVREVVKDVLLPWYNSYRFLVQNAALLKKETGKDFVFDDSVTSSNVMDRWILASTQSLVGFVREEM- 710 (1070)
T ss_pred ccccccccccchhhHHHHHHhhhhhhhHHHHHHHHHHHHhccccCCccccccccccchhHHHHHHHHHHHHHHHHHHHH-
Confidence 53 688999999999887653 34556666554432222111 1225589999999999999999999
Q ss_pred cccChHHHHHHHHHHHHHHH-HHHhhhhcc-cCchhhhhhHHHHHHHHHHHHHHHHHhhc-cCCCccHHHHHHHhhhhHh
Q 012397 379 DDLNTSHILTGAFQDALKFI-NSSLNMLKK-KQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVKTAFLVLLH 455 (464)
Q Consensus 379 ~~~~~~~al~~yl~~l~~~~-n~~~~~~~~-~~~~~~~~~r~~~~~~~~~~l~~~l~lLg-i~p~~~~e~i~~~l~~~~~ 455 (464)
+.|+...++.. |..|+..+ |+|+..++. .+......+-..++.++.++|..+.++|+ |+|+ .+|.|||.|...+.
T Consensus 711 ~~YrLytVvp~-llkfiD~LTNwYiR~nRrrlkGe~G~~d~~~AL~~Lf~vL~t~~r~MaPfTPF-~tE~iyq~Lk~~~~ 788 (1070)
T KOG0434|consen 711 DQYRLYTVVPR-LLKFIDELTNWYIRFNRRRLKGENGEHDCHNALNVLFEVLFTLVRVMAPFTPF-FTEYIYQNLKKYIP 788 (1070)
T ss_pred HheehhhhHHH-HHHHHHHhhhhheehhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHcCCchH-HHHHHHHHHHhcCC
Confidence 99999999999 99999875 888776554 33223334456778999999999999999 9998 99999999998887
Q ss_pred ----------HhcCCCC
Q 012397 456 ----------VFFDDSP 462 (464)
Q Consensus 456 ----------~~~~~~~ 462 (464)
||+...|
T Consensus 789 ~~~~~~~~~SVHfl~~P 805 (1070)
T KOG0434|consen 789 IDKNEKSERSVHFLSYP 805 (1070)
T ss_pred ccccCCccceeEEeecC
Confidence 7776665
No 64
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=100.00 E-value=1.5e-32 Score=293.12 Aligned_cols=127 Identities=13% Similarity=0.043 Sum_probs=102.2
Q ss_pred CcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHc-CC----------------
Q 012397 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDL-GE---------------- 100 (464)
Q Consensus 38 ~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~-g~---------------- 100 (464)
++-.+..++|++||.|||||+++.++.|+++|+.|++|++|.++.|+|.||.+|+.++++. |.
T Consensus 23 ~~f~i~~~PPy~nG~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G~D~~Glpie~~vek~l~~~~~~~~~~~~~~~~~~ 102 (601)
T PF00133_consen 23 PKFFIHDPPPYANGDLHIGHALNKTIKDIIARYKRMQGYNVLFPPGWDCHGLPIEAKVEKKLGIKEKKDRKDLGREEFRE 102 (601)
T ss_dssp GEEEEEE---BTSSS-BHHHHHHHHHHHHHHHHHHCTTSEEEEEEEEB--SHHHHHHHHHHTTTTSHHHCSCSTHHHHHH
T ss_pred CcEEEEeCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCcEeCCCCCcCCCCcchhhhHHHhhcccccccccccccccchh
Confidence 4555666778888999999999999999999999999999999999999999999888753 43
Q ss_pred ChHHHHHHHHHHHHHHHHhcCCCCC-C--CCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCC
Q 012397 101 NPLSLSNRYCQEYLVDMADLQCLPP-T--YQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK 164 (464)
Q Consensus 101 ~~~~~~~~~~~~~~~~l~~lgi~~~-~--~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~ 164 (464)
.++++++++.+.+.+++++||++.+ + .++....+.+.++..|.+|.++|++|++...++||+.+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kglIyr~~~pv~w~p~~ 169 (601)
T PF00133_consen 103 ECREWAEEFIEEQKEQFKRLGVSIDWDREYFTMDPEYEKFVWWQFKKLYEKGLIYRGKKPVNWCPSC 169 (601)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT--SECTCEEETTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTT
T ss_pred hhcchhhhhhhhhhhhhhheeeecccCCceEECCccHhHHHHHHHHHHHhcCcEEeeCCCCCcCccc
Confidence 2678999999999999999999752 1 12222378889999999999999999999999999885
No 65
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=99.97 E-value=6.1e-30 Score=264.22 Aligned_cols=275 Identities=16% Similarity=0.187 Sum_probs=180.9
Q ss_pred cceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCcccc------------------HHHHHHHHHcCC
Q 012397 39 KVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVD------------------DKIIRRANDLGE 100 (464)
Q Consensus 39 ~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g------------------~~i~~~a~~~g~ 100 (464)
...++.||.+|+|.+||||+|+++.+|+++|++|.+|++|.+++++||+| .++.......|.
T Consensus 18 ~~~~~~tg~~psG~~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~lRKvp~~~p~~~~~ylG~Pl~~vpdp~g~ 97 (515)
T TIGR00467 18 NLYTVASGITPSGHIHIGNFREVITADAIARALRDSGSEARFIYIADNYDPLRKVYPFLPEELETYLGMPLTRIPDPEGC 97 (515)
T ss_pred CeEEEecCCCCCCCccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcCCcccccccccccHHHHHhCCCcceecCCCCCC
Confidence 35778888899999999999999999999999999999999999999994 333333333454
Q ss_pred ChHHHHHHHHHHHHHHHHhcCCCCCCCCCCcc----------------hhHHHHHHHHHHHHHCCceEeecCcEEEc-CC
Q 012397 101 NPLSLSNRYCQEYLVDMADLQCLPPTYQPRVS----------------DHMEQIKDMITQIINNDCAYVVEGDVFFA-VE 163 (464)
Q Consensus 101 ~~~~~~~~~~~~~~~~l~~lgi~~~~~~~r~s----------------~~~~~~~~~~~~L~~~G~~y~~~~~~~~~-~~ 163 (464)
. .+++++|...+.+.|+.+||++ + +.+++ ++.+.+.+++.+.... ...+.||+ ..
T Consensus 98 ~-~s~~~h~~~~~~~~l~~~gi~~-e-~~s~te~Y~sG~~~~~i~~~L~~~~~I~~il~~~~~~-----~~~~~~~P~~p 169 (515)
T TIGR00467 98 K-TSYAEHFLIPFLESLPVLGINP-E-FIRASKQYTSGLYASQIKIALDHRKEISEILNEYRTS-----KLEENWYPISV 169 (515)
T ss_pred c-HHHHHHHHHHHHHHHHHcCCeE-E-EEEHHHhhhcCChHHHHHHHHHhHHHHHHHHHHhcCC-----ccCCCceeeee
Confidence 3 9999999999999999999984 3 33333 2222233333333221 11233333 23
Q ss_pred CCCCCCCCCCccccccccCCCcccCCcccCcccccccccccCCCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEec
Q 012397 164 KSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGG 243 (464)
Q Consensus 164 ~~~~~g~l~~~~~~~~~~g~~~~~~~~k~~~~d~~~w~~~~~g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G 243 (464)
-|++||++.. .+.+...+.++.+.+...+. .......|.- ..+|-..|| |.|..+ .+|+...|
T Consensus 170 ic~~cGrv~~-~~~~~~~~~~v~Y~c~cG~~----g~~~~~~g~~--KL~WkvdW~--------~RW~~l--gV~~Ep~G 232 (515)
T TIGR00467 170 FCENCGRDTT-TVNNYDNEYSIEYSCECGNQ----ESVDIYTGAI--KLPWRVDWP--------ARWKIE--KVTFEPAG 232 (515)
T ss_pred ecCCcCccCc-eEEEecCCceEEEEcCCCCE----EEEeecCCCc--ccCCCCCcH--------hhHhhh--CcccccCC
Confidence 5999999865 33233222234333211111 1111111110 223444433 222335 58999999
Q ss_pred ccCccccchHHHHH---HhhccCCCCccEEEEeeeeee--CCcccccccCCccCHHHHHHhcCchhHHHHHhhcCCCCcc
Q 012397 244 IDLIFPHHENEIAQ---SCAACQDSNVSYWMHNGHVTN--NNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPL 318 (464)
Q Consensus 244 ~D~~~~h~~~~~a~---~~a~~~~~~~~~~~~~~~v~~--~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~~~~~~~ 318 (464)
+||..+-.++.... ..++++.+|..+ . ++|+.+ +|+|||||+||+|+++|+++.+++|++||++++.++.+++
T Consensus 233 kDH~~~ggsy~~~~~ia~~~l~~~~P~~~-~-ye~v~L~~~g~KMSKS~Gn~itl~dll~~~~pdalR~~~l~~~~~~~l 310 (515)
T TIGR00467 233 KDHAAAGGSYDTGVNIAKEIFQYSPPVTV-Q-YEWISLKGKGGKMSSSKGDVISVKDVLEVYTPEITRFLFARTKPEFHI 310 (515)
T ss_pred CCccCccCCchhHHHHHHHHhCCCCCcCc-E-EEEEEEcCCCccccCCCCCCccHHHHHHHcCHHHHHHHHhccCCCCCC
Confidence 99543221122211 235556666544 2 477756 5679999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Q 012397 319 NYSVLQLDSASDAVFYIYQTLQD 341 (464)
Q Consensus 319 ~f~~~~~~~~~~~l~~l~~~~~~ 341 (464)
+|+++.+ ++.+.+.++...+..
T Consensus 311 dFd~~~l-~~~dey~r~~~~~~~ 332 (515)
T TIGR00467 311 SFDLDVI-KLYEDYDKFERFYYG 332 (515)
T ss_pred cCCHHHH-HHHHHHHHHHHHHHh
Confidence 9999988 777777766655543
No 66
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=99.97 E-value=1.6e-29 Score=235.96 Aligned_cols=207 Identities=19% Similarity=0.114 Sum_probs=155.2
Q ss_pred cceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q 012397 39 KVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMA 118 (464)
Q Consensus 39 ~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~ 118 (464)
++.|..+||||+|++||||+|++++||+|+|+||++|++|.+++++||+|++|...|.+.+ .|+++++.+.+.|.++++
T Consensus 1 ~v~ve~~spN~~~~~HiGH~R~~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~~-~~~~~~~~~~~~~~~~~~ 79 (212)
T cd00671 1 KILVEFVSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSLE-KWRKLVEESIKADLETYG 79 (212)
T ss_pred CeEEEecCCCCCCCccccccHHHHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999999999999997654 489999999999999999
Q ss_pred hcCCCCCCCCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCCCCCCCCCCCccccccccCCCcccCCcccCccccc
Q 012397 119 DLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFA 198 (464)
Q Consensus 119 ~lgi~~~~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~~g~l~~~~~~~~~~g~~~~~~~~k~~~~d~~ 198 (464)
+|||++ |.+.++|++.+.++++++.|.++|++|+.++.+|+++.+. + .. .|+.
T Consensus 80 ~L~i~~-d~~~~es~~~~~~~~~i~~L~~~g~~~~~~g~~~~~~~~~---~----------------------~~-~d~v 132 (212)
T cd00671 80 RLDVRF-DVWFGESSYLGLMGKVVELLEELGLLYEEDGALWLDLTEF---G----------------------DD-KDRV 132 (212)
T ss_pred HhCCcC-ceecchhhhhhHHHHHHHHHHHCCCEEEeCCcEEEechhh---C----------------------CC-CCeE
Confidence 999994 8889999888899999999999999999999999976432 0 01 1333
Q ss_pred ccccccCCCCcccCCCCCCCCchh---hHHHHHHHhhcCCCeeEEEecccCccccchHHHHHHhhccCCCCccE-EEEee
Q 012397 199 LWKAAKAGEPSWDSPWGPGRPGWH---IECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSY-WMHNG 274 (464)
Q Consensus 199 ~w~~~~~g~~~~~~~wg~~~P~w~---~~~~~~~~~~~~~~~~i~~~G~D~~~~h~~~~~a~~~a~~~~~~~~~-~~~~~ 274 (464)
+.|+ +|. |.|. +++...-.. .+.+..|++.|.|+.. |.....+.+.+++..+.+++ .+.+|
T Consensus 133 l~rs--dG~-----------~~Y~~~DlA~~~~~~~-~~~~~~i~v~g~~~~~-~~~~~~~~~~~lg~~~~~~~~h~~~~ 197 (212)
T cd00671 133 LVRS--DGT-----------YTYFTRDIAYHLDKFE-RGADKIIYVVGADHHG-HFKRLFAALELLGYDEAKKLEHLLYG 197 (212)
T ss_pred EEEC--CCC-----------ccchHHHHHHHHHHHh-cCCCEEEEEECCCHHH-HHHHHHHHHHHcCCCCCCCeEEEEEE
Confidence 4432 343 3333 222111111 3445678899999431 12223344445554422222 22237
Q ss_pred eeeeC-CcccccccC
Q 012397 275 HVTNN-NEKMSKSLG 288 (464)
Q Consensus 275 ~v~~~-G~KmSks~g 288 (464)
+|++. |+|||||+|
T Consensus 198 ~v~~~~~~kmS~R~G 212 (212)
T cd00671 198 MVNLPKEGKMSTRAG 212 (212)
T ss_pred eEEcCCCCCCCCCCC
Confidence 88875 999999987
No 67
>KOG4426 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.5e-28 Score=236.96 Aligned_cols=358 Identities=12% Similarity=0.085 Sum_probs=256.5
Q ss_pred CCcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHH-------------------------
Q 012397 37 RGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKI------------------------- 91 (464)
Q Consensus 37 ~~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i------------------------- 91 (464)
.+++.|.+++||..+.+|+||+|+.||||.++|.+++.|++|+.+|++.|||+..
T Consensus 187 ~KrvlVDFSSPNIAKeMHVGHLRSTIIGdsl~RllE~~~~dVlR~NHvGDWGTQFGMLIahL~dkFPd~l~vsp~IgDLQ 266 (656)
T KOG4426|consen 187 VKRVLVDFSSPNIAKEMHVGHLRSTIIGDSLCRLLEFSGVDVLRRNHVGDWGTQFGMLIAHLFDKFPDYLSVSPPIGDLQ 266 (656)
T ss_pred eeeEEEecCCCcHHHHhhhhhhhhhhHhHHHHHHHHhcCcceEeeccccchHHHHHHHHHHHHHhCCchhccCCCchhHH
Confidence 4899999999999999999999999999999999999999999999999998521
Q ss_pred ----------------HHHHHHc-----CCC------hHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchhHHHHHHHHHH
Q 012397 92 ----------------IRRANDL-----GEN------PLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQ 144 (464)
Q Consensus 92 ----------------~~~a~~~-----g~~------~~~~~~~~~~~~~~~l~~lgi~~~~~~~r~s~~~~~~~~~~~~ 144 (464)
-.+|.+. |.+ |.-+|+-...++...+++|.|+. .....|.|.+.+.+++++
T Consensus 267 vFYkeSKkrFD~deeFKkrAyq~VV~LQggdp~~~kAW~~ICdvSr~ef~kvY~rLdi~l--~e~GESFYq~~m~~vvee 344 (656)
T KOG4426|consen 267 VFYKESKKRFDEDEEFKKRAYQAVVRLQGGDPDIRKAWALICDVSRKEFQKVYNRLDISL--KERGESFYQDRMAEVVEE 344 (656)
T ss_pred HHHHHHHhccCcCHHHHHHHHHHeeecccCCChHHHHHHHHHHhhHHHHHHHHHHhcchH--hhcchhhhhhHHHHHHHH
Confidence 0112111 222 57788999999999999999984 445667899999999999
Q ss_pred HHHCCceEeecCcEEEcCCCCCCCCCCCCccccccccCCCcccCCcccCcccccccccccCCCCcccCCCCCCCCchhhH
Q 012397 145 IINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIE 224 (464)
Q Consensus 145 L~~~G~~y~~~~~~~~~~~~~~~~g~l~~~~~~~~~~g~~~~~~~~k~~~~d~~~w~~~~~g~~~~~~~wg~~~P~w~~~ 224 (464)
|..+|++.+.++....-+..| +- .+---.++|.-++++. .
T Consensus 345 l~~kglvee~~Gr~i~f~~g~---~I---------------------------PLtvVKSDGGftYdts----------D 384 (656)
T KOG4426|consen 345 LKSKGLVEEDDGRRIMFPEGC---DI---------------------------PLTVVKSDGGFTYDTS----------D 384 (656)
T ss_pred HhcCCceeecCCceEeccCCC---Cc---------------------------ceEEEecCCCcccccc----------h
Confidence 999999998776543333222 10 0000112222222210 0
Q ss_pred HHHHHHhhc--CCCeeEEEe--cccCccccchHHHHHHhhccCCCCccEEEEeeeeee---CCcccccccCCccCHHHHH
Q 012397 225 CSAMSAHYL--SSKFDIHGG--GIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTN---NNEKMSKSLGNFFTIRQIT 297 (464)
Q Consensus 225 ~~~~~~~~~--~~~~~i~~~--G~D~~~~h~~~~~a~~~a~~~~~~~~~~~~~~~v~~---~G~KmSks~gn~i~~~dll 297 (464)
.+++..+.. .....|++. |+-. .|..++-.++..++..+..+++ -|.||.++ ||+||-++.|.+|-+.|++
T Consensus 385 laAl~yRl~EEkadwiIYVvD~GQs~-Hf~t~fkAar~~gwld~~~~RV-~HvgFGlVLGeD~KkFkTRsgetVrL~DLL 462 (656)
T KOG4426|consen 385 LAALKYRLNEEKADWIIYVVDSGQSQ-HFNTIFKAARKAGWLDPTYPRV-EHVGFGLVLGEDKKKFKTRSGETVRLLDLL 462 (656)
T ss_pred HHHHHHHHHHhhcCeEEEEeeCchhH-HHHHHHHHHHHcCccCCCccce-eeeeeeeEEccCcccccccccceeeHHHHH
Confidence 111111100 012334444 3331 1111222232233334555666 67788766 7889999999999999999
Q ss_pred Hh-----------------------------cCchhHHHHHhhcCCCCccCCCHHHHHHHHHH-HHHHHHHHHHHHHhcC
Q 012397 298 ER-----------------------------YHPLALRHFLISAHYRSPLNYSVLQLDSASDA-VFYIYQTLQDCEVALS 347 (464)
Q Consensus 298 ~~-----------------------------~~~dalR~~ll~~~~~~~~~f~~~~~~~~~~~-l~~l~~~~~~~~~~l~ 347 (464)
++ ++-..++|.-+++..-.+.-||.|.|.+-+++ .-||.|+++|++|+.+
T Consensus 463 dEg~kRs~~~Liergrdk~~tpeeL~~a~eavayGciKYaDL~hnR~~dY~FSFDkML~DrGnTAvYLLYa~tRIcSI~r 542 (656)
T KOG4426|consen 463 DEGKKRSKEKLIERGRDKVLTPEELDAAQEAVAYGCIKYADLSHNRITDYIFSFDKMLEDRGNTAVYLLYAYTRICSIAR 542 (656)
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhcchhHhhhccccccceeeeHHHHhhccCcceehhHHHHHHHHHHHH
Confidence 62 34456888889988889999999999877655 4599999999999987
Q ss_pred ccccCC--------------CccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhcccCch--
Q 012397 348 PFQEHG--------------KTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPK-- 411 (464)
Q Consensus 348 ~~~~~~--------------~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~~~~~~~-- 411 (464)
+..... ..++.|..|-..|.++.+-+.++. +++ +++.++.|+++++..|..||+.|......
T Consensus 543 ksg~d~~~l~~~lkkT~ki~LDH~~E~kLg~~lLkf~e~v~~~~-~~L-~lh~lC~y~y~l~t~Ft~FY~~Cyv~e~~~e 620 (656)
T KOG4426|consen 543 KSGKDNVDLIKELKKTGKIALDHEKEWKLGKHLLKFAEIVEKAL-DSL-FLHVLCDYLYELATLFTEFYDSCYVIEKNKE 620 (656)
T ss_pred HcCCchhhHHHHHHhcCccccCCHHHHHHHHHHHhHHHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHHhhccEEeccccc
Confidence 754221 124556778889999999999999 776 78888999999999999999999774311
Q ss_pred ----hhhhhHHHHHHHHHHHHHHHHHhhccCCC
Q 012397 412 ----QQQLSLIESLRKIENEVKEVLRILGLLPP 440 (464)
Q Consensus 412 ----~~~~~r~~~~~~~~~~l~~~l~lLgi~p~ 440 (464)
...-.|+.+|.+++.+++.++.||||.|-
T Consensus 621 g~i~~vn~sRllLCeata~VmrkcF~iLGi~pV 653 (656)
T KOG4426|consen 621 GEIPFVNMSRLLLCEATAAVMRKCFHILGIKPV 653 (656)
T ss_pred cccccchhHHHHHHHHHHHHHHHhhHhhCCccc
Confidence 12368999999999999999999999885
No 68
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=6.1e-27 Score=233.77 Aligned_cols=274 Identities=15% Similarity=0.148 Sum_probs=189.5
Q ss_pred cceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccH--HH----H--HHHH-HcCCC--------
Q 012397 39 KVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDD--KI----I--RRAN-DLGEN-------- 101 (464)
Q Consensus 39 ~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~--~i----~--~~a~-~~g~~-------- 101 (464)
...++-||.+|+|.+||||+|..+++|+++|.||.+|++|.+|+-+||+|. ++ . ..+. -.|++
T Consensus 19 ~~~~v~tGisPSG~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Ylg~Plt~IPdP~ 98 (521)
T COG1384 19 DEYVVATGISPSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQYLGMPLTEIPDPF 98 (521)
T ss_pred CcEEEecCcCCCCCcccccHHHHHHHHHHHHHHHHcCCceEEEEEccCCcccccCCCCCCChHHHHHHcCCccccCCCCc
Confidence 457888999999999999999999999999999999999999999999984 21 1 2222 23543
Q ss_pred --hHHHHHHHHHHHHHHHHhcCCCCCCCCCCcc----------------hhHHHHHHHHHHHHHCCceEeecCcEEEc-C
Q 012397 102 --PLSLSNRYCQEYLVDMADLQCLPPTYQPRVS----------------DHMEQIKDMITQIINNDCAYVVEGDVFFA-V 162 (464)
Q Consensus 102 --~~~~~~~~~~~~~~~l~~lgi~~~~~~~r~s----------------~~~~~~~~~~~~L~~~G~~y~~~~~~~~~-~ 162 (464)
+.++++++...|.+.|+.+||.+ + +.+++ ++.+.+.+++.+...+ +.. +-||. .
T Consensus 99 G~~~Sya~hf~~~f~~~l~~~Gi~~-E-~~s~se~Yk~G~~~~~i~~ale~rdeI~~il~~~~~~----~~~-e~~~P~~ 171 (521)
T COG1384 99 GCCDSYAEHFLRPFEEFLDEFGIEV-E-FVSATELYKSGLYDEAIRIALERRDEIMEILNEYRGR----ELE-EDWSPFM 171 (521)
T ss_pred cccchHHHHHHHHHHHHHHhcCCce-E-EEEhHHhhhcccHHHHHHHHHhhHHHHHHHHHHhcCC----ccc-CCceecc
Confidence 58999999999999999999974 2 23332 3334444444444333 111 22332 3
Q ss_pred CCCCCCCCCCCccccccccCCCcccCCcccCcccccccccc--cCCCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEE
Q 012397 163 EKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAA--KAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIH 240 (464)
Q Consensus 163 ~~~~~~g~l~~~~~~~~~~g~~~~~~~~k~~~~d~~~w~~~--~~g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~ 240 (464)
.-|+.||++....+.+...+.++...|...+. .+... ..|.. +|-+.||. .|..+ .+|+.
T Consensus 172 piC~kcGri~~t~v~~~d~~~~v~Y~Ce~Gh~----g~v~ir~g~~KL----~WRvdWp~--------RW~~l--gVd~E 233 (521)
T COG1384 172 PICEKCGRILTTPVIEWDGEGTVEYRCECGHE----GEVDIRGGEGKL----PWRVDWPM--------RWAAL--GVDFE 233 (521)
T ss_pred ccccccCCcceeEEEEecCCceEEEEecCCcc----ceeeccccCccc----ccCcCccc--------hhhcc--Ccccc
Confidence 35999999776666555333344444322221 11111 12223 34444332 12234 48999
Q ss_pred EecccCccccchHHHHHHhhc---cCCCCccEEEEeeeeeeCC-cccccccCCccCHHHHHHhcCchhHHHHHhhcCCCC
Q 012397 241 GGGIDLIFPHHENEIAQSCAA---CQDSNVSYWMHNGHVTNNN-EKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRS 316 (464)
Q Consensus 241 ~~G~D~~~~h~~~~~a~~~a~---~~~~~~~~~~~~~~v~~~G-~KmSks~gn~i~~~dll~~~~~dalR~~ll~~~~~~ 316 (464)
..||||...-.++..+...+- +.+||..++ ++|++++| +|||||+||+|+++|+++.+.++.|||+++++.+.+
T Consensus 234 PfGKDH~a~ggSydtg~~I~~ei~g~~pP~~~~--YE~i~lkg~~~mSsSkG~~i~~~dwlev~~pE~lry~~~r~kP~r 311 (521)
T COG1384 234 PFGKDHAAAGGSYDTGKRIAREIFGYEPPVPFV--YEWILLKGGGKMSSSKGNVISLSDWLEVAPPEVLRYLIARTKPNR 311 (521)
T ss_pred cCCcccccccCchHHHHHHHHHhcCCCCCCCCc--eEEEEecCCcccccCCCcEEcHHHHHHhcCHhHeeeeeeecCCCc
Confidence 999997766666655554443 456777663 59999977 799999999999999999999999999999998888
Q ss_pred ccCCCHHH-HHHHHHHHHHHHHHH
Q 012397 317 PLNYSVLQ-LDSASDAVFYIYQTL 339 (464)
Q Consensus 317 ~~~f~~~~-~~~~~~~l~~l~~~~ 339 (464)
.++|+.+. +.+.+..+.++...+
T Consensus 312 ~~~~d~~~~il~lvDEydr~e~~Y 335 (521)
T COG1384 312 HIDFDFDLGILKLVDEYDRLERIY 335 (521)
T ss_pred ceecCCCCChhHHHHHHHHHHHHH
Confidence 88888887 777776655444443
No 69
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=99.94 E-value=2.2e-27 Score=231.40 Aligned_cols=276 Identities=17% Similarity=0.236 Sum_probs=152.3
Q ss_pred CcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccH--HHHHHHH------HcCCC--------
Q 012397 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDD--KIIRRAN------DLGEN-------- 101 (464)
Q Consensus 38 ~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~--~i~~~a~------~~g~~-------- 101 (464)
+...++-||.+|+|.+||||+|.++++|+++|.||.+|.+|.++..+||+|. ||....- -.|++
T Consensus 22 ~~~~v~~sG~sPSG~~HIGn~rEv~~~~~V~~al~~~g~~~r~i~~~DD~D~lRKvP~~~p~~~~~~ylg~Plt~VPdP~ 101 (360)
T PF01921_consen 22 KEPYVFASGISPSGLPHIGNFREVLRADMVARALRDRGKDVRLIYFSDDMDPLRKVPPNVPNPELEKYLGKPLTRVPDPF 101 (360)
T ss_dssp -SEEEEEEEE--SS---HHHHHHHHHHHHHHHHHHTTT-EEEEEEEE-TTSB-----TTS-CC-CCCCTTSBTTTSB-TT
T ss_pred CccEEEecCCCCCCCcccccccchhhHHHHHHHHHHcCCCEEEEEEeecCCcccCCCCCCChHHHHHhcCCccccCCCCC
Confidence 5678888999999999999999999999999999999999999999999984 3322111 12332
Q ss_pred --hHHHHHHHHHHHHHHHHhcCCCCCCC-----CCCcc----------hhHHHHHHHHHHHHHCCceEeecCcEEEcC-C
Q 012397 102 --PLSLSNRYCQEYLVDMADLQCLPPTY-----QPRVS----------DHMEQIKDMITQIINNDCAYVVEGDVFFAV-E 163 (464)
Q Consensus 102 --~~~~~~~~~~~~~~~l~~lgi~~~~~-----~~r~s----------~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~-~ 163 (464)
..+|+++|...|.+.|+.+||.+ +. ..++- ++.+.+.+++.+...... .+.||+. .
T Consensus 102 G~~~SyaeH~~~~~~~~L~~~gie~-e~~s~te~Y~sG~y~~~i~~aL~~~~~I~~Il~~~~~~~~-----~~~y~Pf~p 175 (360)
T PF01921_consen 102 GCHESYAEHFNAPFEEFLDEFGIEY-EFISQTEMYRSGRYDEQIRTALENRDEIREILNEYRGRER-----PETYSPFLP 175 (360)
T ss_dssp SSSSCHHHHHHHHHHHHHHTTT----EEEECCCCCCTTTTHHHHCHHHHTHHHHHHHHHHHHHHT-------TT--SEEE
T ss_pred CCCccHHHHHHHHHHHHHHHcCCce-EEEeHHHhhhCCchHHHHHHHHHhHHHHHHHHHHhcCcCC-----CCCeeeeee
Confidence 37899999999999999999974 21 11111 344455555555543321 1223322 2
Q ss_pred CCCCCCCCCCccccccc-cCCCcccCCcccCcccccccccccCCCCcc-cCCCCCCCCchhhHHHHHHHhhcCCCeeEEE
Q 012397 164 KSPNYGRLSGQRLENNR-AGERVAVDSRKRNPADFALWKAAKAGEPSW-DSPWGPGRPGWHIECSAMSAHYLSSKFDIHG 241 (464)
Q Consensus 164 ~~~~~g~l~~~~~~~~~-~g~~~~~~~~k~~~~d~~~w~~~~~g~~~~-~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~ 241 (464)
-|+.||++....+.+.. ++.++...+. ..|.... +..-|.+...|.++++ |.|..+ .+++..
T Consensus 176 iC~~cGri~tt~v~~~d~~~~~v~Y~c~-------------~cG~~g~~~i~~g~gKL~WkvDW~-mRW~~l--gVdfEp 239 (360)
T PF01921_consen 176 ICEKCGRIDTTEVTEYDPEGGTVTYRCE-------------ECGHEGEVDITGGNGKLQWKVDWP-MRWAAL--GVDFEP 239 (360)
T ss_dssp EETTTEE--EEEEEEE--SSSEEEEE---------------TTS---EEETTTT-EEE-HHHHHH-HHHHHT--T-SEEE
T ss_pred eccccCCcccceeeEeecCCCEEEEEec-------------CCCCEEEEecCCCcccccCCCcCh-hhhhhc--Cceecc
Confidence 48999997665555543 2333333220 1111100 1111345566766653 334556 489999
Q ss_pred ecccCccccchHHHHHHhh---ccCCCCccEEEEeeeeeeCCc-ccccccCCccCHHHHHHhcCchhHHHHHhhcCCCCc
Q 012397 242 GGIDLIFPHHENEIAQSCA---ACQDSNVSYWMHNGHVTNNNE-KMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSP 317 (464)
Q Consensus 242 ~G~D~~~~h~~~~~a~~~a---~~~~~~~~~~~~~~~v~~~G~-KmSks~gn~i~~~dll~~~~~dalR~~ll~~~~~~~ 317 (464)
.||||..+..++..+..++ ++.+||..+ .++|++++|+ |||||+||+++++|+++.+.|+.|||+++++.+.+.
T Consensus 240 ~GKDH~~~GGS~d~~~~I~~~i~g~~pP~~~--~YE~~~~~g~~kmSsSkG~~~t~~e~L~~~~PE~lr~l~~~~~P~~~ 317 (360)
T PF01921_consen 240 FGKDHASPGGSYDTSKRIAREILGYEPPVPF--PYEFFLDKGGGKMSSSKGNGITPEEWLEYAPPESLRYLMARTKPNKA 317 (360)
T ss_dssp EEHHHHCTTSHHHHHHHHHHHCC-----EEE--EE--EEES--------------HHHHHTTS-HHHHHHHHHCS-TTS-
T ss_pred CCCccCCCCCChhhHHHHHHHHhCCCCCCCC--CeeEEEeCCCcccccCCCCccCHHHHHHhcCHHHHHHHHcccCCCcc
Confidence 9999766555555555444 345555543 4699999776 999999999999999999999999999999888888
Q ss_pred cCCCHH-HHHHHHHHHHHHHH
Q 012397 318 LNYSVL-QLDSASDAVFYIYQ 337 (464)
Q Consensus 318 ~~f~~~-~~~~~~~~l~~l~~ 337 (464)
.+|+.+ .+......+.++..
T Consensus 318 ~~~~~~~~i~~~~Deyd~~~~ 338 (360)
T PF01921_consen 318 KDFSFDLVIPRLYDEYDRLER 338 (360)
T ss_dssp EEE--STTHHHHHHHHHHHHH
T ss_pred eEeccCcchHHHHHHHHHHHH
Confidence 888888 77777766654443
No 70
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=99.93 E-value=3.1e-25 Score=222.15 Aligned_cols=248 Identities=19% Similarity=0.116 Sum_probs=154.9
Q ss_pred cCCCCcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHH-------HHc--------
Q 012397 34 PIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRA-------NDL-------- 98 (464)
Q Consensus 34 ~~~~~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a-------~~~-------- 98 (464)
+..+++|.|..++|||+||+||||+|++++||+|+|+|+..|++|...++++|+|..+..-+ .+.
T Consensus 16 ~~~~~kv~VE~sSpNp~kplHvGHlR~~iiGd~laril~~~G~~V~r~nyigD~G~Q~~~l~~~~~~~~~~~~~~~~~~~ 95 (354)
T PF00750_consen 16 KGKGKKVVVEFSSPNPTKPLHVGHLRNTIIGDSLARILEAAGYDVTRENYIGDWGTQIGLLAASYKKFGDEELLEEDPIK 95 (354)
T ss_dssp TTTSEEEEEEE---BTTSS-BHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEBTTSHHHHHHHHHHHHHHHHHTSHSSCHH
T ss_pred cCCCCEEEEEecCCCCCCCCcCCcchhhhhhHHHHHHHHHcCCeeeeEEEECCCCHHHHHHHHHHHhhhhhhhccccccc
Confidence 33468999999999999999999999999999999999999999999999999996542211 100
Q ss_pred ----------------CC------------------------ChHHHHHH-HHHHHHHHHHhcCCCCCCCCCCcc--hhH
Q 012397 99 ----------------GE------------------------NPLSLSNR-YCQEYLVDMADLQCLPPTYQPRVS--DHM 135 (464)
Q Consensus 99 ----------------g~------------------------~~~~~~~~-~~~~~~~~l~~lgi~~~~~~~r~s--~~~ 135 (464)
.. ...++... ..+.+.++|+++++.+ |.+...+ .+.
T Consensus 96 ~l~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~~~~~~~~~~k~~l~~l~i~f-Dv~~~E~Es~~~ 174 (354)
T PF00750_consen 96 HLEDLYVGANKRDEADEIAEKEPEELEEEAREYLKKLEQGDEEFRELWQKYILEWSKETLQRLYIRF-DVWFDESESFYS 174 (354)
T ss_dssp HHHHHHHHHHHHHHHTTCSSGCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHTT----SEEEEHCHHHHT
T ss_pred chhhhhhhhhhhhhhhhhccccccccccccceeeeecccccHHHHHHHHHHHHHHHHHHHHHHHHHh-CcCcccchhhhh
Confidence 00 01223333 6667888899999985 5544223 345
Q ss_pred HHHHHHHHHHHHCCceEeecCcEEEcCCCCCCCCCCCCccccccccCCCcccCCcccCcccccccccccCCCCcccCCCC
Q 012397 136 EQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWG 215 (464)
Q Consensus 136 ~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~~g~l~~~~~~~~~~g~~~~~~~~k~~~~d~~~w~~~~~g~~~~~~~wg 215 (464)
..+.+++++|.++|++|+.++..|+..... |. ..+..+-| ++|..
T Consensus 175 ~~v~~vl~~L~e~g~~~~~dGa~~i~~~~~---g~-----------------------~k~~Vl~k--sDGt~------- 219 (354)
T PF00750_consen 175 GKVDEVLERLKEKGLLYESDGALWIDLTKF---GD-----------------------DKDRVLRK--SDGTS------- 219 (354)
T ss_dssp THHHHHHHHHHCTTTEEEETTEEEEEGCCT---ST-----------------------SS-EEEEE--TTSEB-------
T ss_pred hHHHHHHHHHHhCCcEEecCCcEEEechhc---CC-----------------------CCcceEEc--CCCce-------
Confidence 668899999999999998888888765432 11 00222222 23332
Q ss_pred CCCCchhhH-HHHHHHhh--cCCCeeEEEecccCccccchHHHHHHhhccCCC-CccEE-EEeeeeee-CCc-ccccccC
Q 012397 216 PGRPGWHIE-CSAMSAHY--LSSKFDIHGGGIDLIFPHHENEIAQSCAACQDS-NVSYW-MHNGHVTN-NNE-KMSKSLG 288 (464)
Q Consensus 216 ~~~P~w~~~-~~~~~~~~--~~~~~~i~~~G~D~~~~h~~~~~a~~~a~~~~~-~~~~~-~~~~~v~~-~G~-KmSks~g 288 (464)
.|... +++...+. .+....|++.|.||. .|.....+.+.+++..+ -.++. +..|+++. +|+ |||||+|
T Consensus 220 ----~Y~trDiA~~~~r~~~~~~d~~iyV~~~~q~-~hf~~l~~~l~~lg~~~~~~~~~H~~~g~vl~~~gk~~mstR~G 294 (354)
T PF00750_consen 220 ----TYLTRDIAYHLYRFEEYGFDKIIYVVGADQK-GHFKQLFAILEALGYDPEAVKLQHVSFGVVLLKDGKVKMSTRKG 294 (354)
T ss_dssp -----HHHHHHHHHHHHHCCSS-SEEEEEEEGGGH-HHHHHHHHHHHHTT-HHHHCTEEEEEE-EEEETTBEESS-TTTT
T ss_pred ----EEEcchHHHHHHHHhhhccccEEEEecCchh-hHHHHHHHHHHHhCCCCCCCEEEEEEEEEEEcCCCCccccCCCC
Confidence 22211 11112222 455677999999932 11122234444455422 22331 33456655 787 8999999
Q ss_pred CccCHHHHHH--------------------------hcCchhHHHHHhhcCCCCccCCCH
Q 012397 289 NFFTIRQITE--------------------------RYHPLALRHFLISAHYRSPLNYSV 322 (464)
Q Consensus 289 n~i~~~dll~--------------------------~~~~dalR~~ll~~~~~~~~~f~~ 322 (464)
|+|+++||++ .+|.+|+||++|+.++.+++.|+|
T Consensus 295 ~~i~l~dllde~~~~a~~~~~~~~~~~~~~~~~~a~~vg~~Ai~y~~l~~~~~~~~~Fdw 354 (354)
T PF00750_consen 295 NVITLDDLLDEAVERALEIMEKNPDLSEEEREEIAEQVGVGAIRYFDLSQKRNKDYVFDW 354 (354)
T ss_dssp SSTBHHHHHHHHHHHHHHHHHHHTTCTHCHHHHHHHHHHHHHHHHHHHSS-TTS-EEEEC
T ss_pred CceEHHHHHHHHHHHHHHHHhcccCCChhhHHHHHHHhhhhHHHHHHHhccCCCCceecC
Confidence 9999999999 577889999999888888888875
No 71
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.90 E-value=1.5e-23 Score=183.67 Aligned_cols=142 Identities=27% Similarity=0.317 Sum_probs=117.6
Q ss_pred EEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q 012397 42 MYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQ 121 (464)
Q Consensus 42 v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lg 121 (464)
|+.|+|+|+|++||||+|+++++|+++|++|.+|++|.+++++||+|+++...+.+.+.+++++++++.+.|.+.++
T Consensus 1 ~~~~~p~~~~~~HlGh~~~~~~~d~~~r~lr~~G~~v~~~~~~dd~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~--- 77 (143)
T cd00802 1 TTFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPANKKGENAKAFVERWIERIKEDVE--- 77 (143)
T ss_pred CEecCCCCCCCccHhHHHHHHHHHHHHHHHHHcCCCeEEEeeeCCCchHHHHHHHhcCCCHHHHHHHHHHHHHHHHH---
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCCCCCCCCCCCccccccccCCCcccCCcccCcccccccc
Q 012397 122 CLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWK 201 (464)
Q Consensus 122 i~~~~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~~g~l~~~~~~~~~~g~~~~~~~~k~~~~d~~~w~ 201 (464)
|
T Consensus 78 --------------------------------------y----------------------------------------- 78 (143)
T cd00802 78 --------------------------------------Y----------------------------------------- 78 (143)
T ss_pred --------------------------------------H-----------------------------------------
Confidence 1
Q ss_pred cccCCCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCccccchHHHHHHhhccCCCCccEEEEeeeeee-CC
Q 012397 202 AAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTN-NN 280 (464)
Q Consensus 202 ~~~~g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h~~~~~a~~~a~~~~~~~~~~~~~~~v~~-~G 280 (464)
+.+++++.........++++.|+|+.. |+.....+..+++... +..++|.++++. +|
T Consensus 79 --------------------~~~~~a~~~~~~~~~~~i~~~G~Dq~~-h~~~~~~i~~~~~~~~-~p~~~~~~~l~~~~g 136 (143)
T cd00802 79 --------------------MFLQAADFLLLYETECDIHLGGSDQLG-HIELGLELLKKAGGPA-RPFGLTFGRVMGADG 136 (143)
T ss_pred --------------------HHHHHHHHHHHhhCCcEEEEechhHHH-HHHHHHHHHHHhCCCC-CceEEEeCCeECCCC
Confidence 111222222222223689999999888 8888888888876543 334578899988 66
Q ss_pred ccccccc
Q 012397 281 EKMSKSL 287 (464)
Q Consensus 281 ~KmSks~ 287 (464)
+|||||+
T Consensus 137 ~KmSks~ 143 (143)
T cd00802 137 TKMSKSK 143 (143)
T ss_pred CcCCCCC
Confidence 8999995
No 72
>KOG1195 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=6.3e-22 Score=195.56 Aligned_cols=358 Identities=15% Similarity=0.079 Sum_probs=245.1
Q ss_pred CCcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHH----------------------
Q 012397 37 RGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRR---------------------- 94 (464)
Q Consensus 37 ~~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~---------------------- 94 (464)
.+++.|..++||.+++.|+||+|+.++|-.++...+..|++|..+++..|+|..+-.-
T Consensus 109 ~k~iVVefSSPNIAK~FHvGhLRsTiiG~flanl~e~~G~~Vtr~NYLGDWGkQFgll~~g~~~~g~e~~L~~~pI~hL~ 188 (567)
T KOG1195|consen 109 GKKIVVEFSSPNIAKPFHVGHLRSTIIGNFLANLHEALGWEVTRVNYLGDWGKQFGLLALGFQLYGDEEELQLNPIKHLF 188 (567)
T ss_pred CceEEEEecCCCcccccccchhhhhhhhhHhhhhHHhhCCceeehhhhhHHHHHhhHHhccHHhhCchhhhccchHHHHH
Confidence 5899999999999999999999999999999999999999999999999997422100
Q ss_pred --HHHc----------------------CCC------hHHHHHHHHHHHHHHHHhcCCCCCCCCCCcc-hhHHHHHHHHH
Q 012397 95 --ANDL----------------------GEN------PLSLSNRYCQEYLVDMADLQCLPPTYQPRVS-DHMEQIKDMIT 143 (464)
Q Consensus 95 --a~~~----------------------g~~------~~~~~~~~~~~~~~~l~~lgi~~~~~~~r~s-~~~~~~~~~~~ 143 (464)
+.+. +.+ |+.+.+-....+.+.+++|||.+ |.+...| ...+.+++..+
T Consensus 189 dvYVk~nk~~~~~~~~~~~are~f~rlE~~d~e~~k~Wqrfr~lsIe~l~~~Y~Rl~v~F-D~y~gESqv~~e~~~~~~d 267 (567)
T KOG1195|consen 189 DVYVKINKDAEKDPDTAEEAREFFKRLEDGDEEHLKLWQRFRDLSIEKLIKTYNRLNVKF-DEYSGESQVSNEKMQEALD 267 (567)
T ss_pred HHHHHhhhhhhhCcchHHHHHHHHHHHhcccHHHHHHHHHhhhhhHHHHHHHHHHhceee-eeccchHHHHHHHHHHHHH
Confidence 0000 000 34466666677778888899985 7777766 55677888888
Q ss_pred HHHHCCceEeecCcEEEcCCCCCCCCCCCCccccccccCCCcccCCcccCcccccccccccCCCCcccCCCCCCCCchhh
Q 012397 144 QIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHI 223 (464)
Q Consensus 144 ~L~~~G~~y~~~~~~~~~~~~~~~~g~l~~~~~~~~~~g~~~~~~~~k~~~~d~~~w~~~~~g~~~~~~~wg~~~P~w~~ 223 (464)
.+...|+..+.++..+++......-. | -.++-+ ++|..-+.+ + .
T Consensus 268 ~~rs~~l~~e~dG~~vidL~~~~~~~------------~-------------~~~V~k--sdgttLYlt---R-----d- 311 (567)
T KOG1195|consen 268 LLRSANLTEEIDGTIVIDLSKIDKKA------------G-------------KAVVQK--SDGTTLYLT---R-----D- 311 (567)
T ss_pred HHHhcCCcccCCCcEEEEecccCccc------------c-------------eEEEEc--CCCceehHH---H-----H-
Confidence 88888877666666666554211000 0 000000 111100000 0 0
Q ss_pred HHHHHHHhh--cCCCeeEEEe--cccCccccchHHHHHHhhccCCCCccEEEEeeeeeeCCcccccccCCccCHHHHHH-
Q 012397 224 ECSAMSAHY--LSSKFDIHGG--GIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITE- 298 (464)
Q Consensus 224 ~~~~~~~~~--~~~~~~i~~~--G~D~~~~h~~~~~a~~~a~~~~~~~~~~~~~~~v~~~G~KmSks~gn~i~~~dll~- 298 (464)
..+...++ +...--|++. +++. |......+..+++.. |..-+-|..|..+. -||+++|.++.+.|+++
T Consensus 312 -iaaal~Rl~~y~fdr~iYVvd~~Q~~---hf~~lf~ilk~mg~~-~a~~~qHV~~G~v~--GmsTRkG~~~fl~dil~e 384 (567)
T KOG1195|consen 312 -IAAALDRLEKYSFDRLIYVVDSQQKD---HFCQLFEILKKMGFD-WAKKLQHVNFGRVQ--GMSTRKGKVVFLDDILEE 384 (567)
T ss_pred -HHHHHHHHHhcCcceEEEEechHHHH---HHHHHHHHHHHhCch-hhhhcceecccccc--cccccCCceeeHHHHHHH
Confidence 11111111 1112234444 3332 544445555666654 12222333444444 49999999999998886
Q ss_pred ---------------------------hcCchhHHHHHhhcCCCCccCCCHHHHHHHHHHHH-HHHHHHHHHHHhcCccc
Q 012397 299 ---------------------------RYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVF-YIYQTLQDCEVALSPFQ 350 (464)
Q Consensus 299 ---------------------------~~~~dalR~~ll~~~~~~~~~f~~~~~~~~~~~l~-~l~~~~~~~~~~l~~~~ 350 (464)
.+|.-|+..-.+.....++..|+|+.+-+..+..+ +|+|++.|+.++.+++.
T Consensus 385 ~re~m~e~M~s~~t~~~~~~~~~~vad~lg~sAviv~d~k~rr~s~yeF~w~~~~~~~gdtg~yLQY~HsRL~Slerk~~ 464 (567)
T KOG1195|consen 385 AREQMLEVMASNKTKPVQMANPDEVADRLGLSAVIVQDFKGRRISNYEFSWNRVLSFEGDTGPYLQYTHSRLRSLERKFS 464 (567)
T ss_pred HHHHHHHHHHhccCCCCCCCCHHHHHHHHhhHHHHHHHHHHHhcccceEEhhhhheecCCchHHHHHHHHHHHHHHHhcc
Confidence 36788888888877778899999999998887665 99999999999987765
Q ss_pred cCCC-----------ccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhcccCchh-hhhhHH
Q 012397 351 EHGK-----------TARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQ-QQLSLI 418 (464)
Q Consensus 351 ~~~~-----------~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~~~~~~~~-~~~~r~ 418 (464)
.... .+|.-..|+..|..+++.+..++ +.++....+. ||+.++..++++|...++.+.+. ..-.|+
T Consensus 465 ~~~~~~l~~~d~~~l~ep~~~~Lv~~L~~fp~vve~s~-e~lE~~~lV~-YL~~La~a~s~~yk~l~V~d~~~eia~aRL 542 (567)
T KOG1195|consen 465 DVTLDDLDEIDFSLLTEPDALLLVRLLLQFPEVVEKSM-EQLEPCTLVT-YLFKLAHAVSSAYKILWVKDSPMEIALARL 542 (567)
T ss_pred ccCchhhhccchhhcCChhHHHHHHHHhhhHHHHHHHH-HhhcchhHHH-HHHHHHHHHHhHHhheeecCCcHHHHHHHH
Confidence 2110 12223567889999999999999 8988655554 59999999999998877754333 356899
Q ss_pred HHHHHHHHHHHHHHHhhccCCC
Q 012397 419 ESLRKIENEVKEVLRILGLLPP 440 (464)
Q Consensus 419 ~~~~~~~~~l~~~l~lLgi~p~ 440 (464)
.+..+++.+|.+++.+|||+|-
T Consensus 543 ~Lf~AvRqVL~ngm~lLGitPv 564 (567)
T KOG1195|consen 543 LLFSAVRQVLNNGMRLLGITPV 564 (567)
T ss_pred HHHHHHHHHHHhHHHHhCCCcc
Confidence 9999999999999999999995
No 73
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=99.88 E-value=5e-22 Score=205.91 Aligned_cols=259 Identities=24% Similarity=0.251 Sum_probs=172.9
Q ss_pred CCcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 012397 37 RGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVD 116 (464)
Q Consensus 37 ~~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 116 (464)
+++|..- ++|+|||+|||||||++++.+.+|| +++..++..+||.+.++ .+ ....+.+.|.++
T Consensus 99 ~g~V~tR-FaPsPtG~LHIGharaalln~~~Ar-----~~~G~~iLRidDTDpk~-~R----------~~~e~~~~I~ed 161 (567)
T PRK04156 99 KGKVVMR-FAPNPSGPLHLGHARAAILNDEYAK-----MYGGKFILRFEDTDPRT-KR----------PDPEAYDMILED 161 (567)
T ss_pred CCeEEEE-eCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEeEccCCCCc-cc----------chHHHHHHHHHH
Confidence 4566666 7899999999999999999999999 35556666667666644 22 123466899999
Q ss_pred HHhcCCCCCCCCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCC---------C-CCCCCCCCcc-c---cccccC
Q 012397 117 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK---------S-PNYGRLSGQR-L---ENNRAG 182 (464)
Q Consensus 117 l~~lgi~~~~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~---------~-~~~g~l~~~~-~---~~~~~g 182 (464)
|++||+.+ |...++|++.+.+.++..+|+++|++|. ++|... . ..|..++..+ + +++.+|
T Consensus 162 L~wLGl~w-D~~~~qSdr~~~y~~~a~~Li~~G~AY~-----C~cs~ee~~~~r~~g~~~~~R~~~~ee~l~~~e~m~~G 235 (567)
T PRK04156 162 LKWLGVKW-DEVVIQSDRLEIYYEYARKLIEMGGAYV-----CTCDPEEFKELRDAGKPCPHRDKSPEENLELWEKMLDG 235 (567)
T ss_pred HHHcCCCC-CCccCcccCHHHHHHHHHHHHHcCCCcc-----CCCCHHHHHHHHhcCCCCCCcCCCHHHHHHHHHHhhcC
Confidence 99999986 7788999999999999999999999994 333221 0 1133232211 1 222223
Q ss_pred C--------CcccCCcccCc--ccccccccccCCCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCcc---c
Q 012397 183 E--------RVAVDSRKRNP--ADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIF---P 249 (464)
Q Consensus 183 ~--------~~~~~~~k~~~--~d~~~w~~~~~g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~---~ 249 (464)
. |+..+....++ .||.+|+......+ .||.+++.|.. ..|..++|-|..|.+|+. -
T Consensus 236 ~~~~g~~vlR~k~d~~~~n~~~rD~v~~R~~~~~h~----~~Gd~~~i~Pt-------Y~fA~~VDD~l~GITHViRg~d 304 (567)
T PRK04156 236 EYKEGEAVVRVKTDLEHPNPSVRDWVAFRIVKTPHP----RVGDKYRVWPT-------YNFAVAVDDHLLGVTHVLRGKD 304 (567)
T ss_pred ccccCCeEEEEECcccCCCCCccccEEEEEcCCCcc----ccCCCeEEEEE-------eccCceeeecCCCCCeEEcccc
Confidence 2 22222222333 68888875332222 36776544421 013335555555555444 3
Q ss_pred cchHHHHHHh---hccCCCCccEEEEeeeeeeCCccccccc-------C--------CccCHHHHHHh-cCchhHHHHHh
Q 012397 250 HHENEIAQSC---AACQDSNVSYWMHNGHVTNNNEKMSKSL-------G--------NFFTIRQITER-YHPLALRHFLI 310 (464)
Q Consensus 250 h~~~~~a~~~---a~~~~~~~~~~~~~~~v~~~G~KmSks~-------g--------n~i~~~dll~~-~~~dalR~~ll 310 (464)
|..+.+.+.. +++.. ++ .+.|.+.++.+|.|||||+ | +..++..+.+. +.|+|+|.|++
T Consensus 305 ~~~~t~~Q~~l~~~Lg~~-~P-~~~H~~~L~~~g~kLSKR~~~~~i~~g~~~gWDDpr~~Tl~~lrrrG~~PeAi~~fl~ 382 (567)
T PRK04156 305 HIDNTEKQRYIYDYFGWE-YP-ETIHYGRLKIEGFVLSTSKIRKGIEEGEYSGWDDPRLPTLRALRRRGILPEAIRELII 382 (567)
T ss_pred cccChHHHHHHHHHcCCC-Cc-eEEEcceecCCCceeecccchhccccCccccccCCchHHHHHHHHcCCCHHHHHHHHH
Confidence 6655555543 33433 33 4588999989999999998 5 34677787775 99999999999
Q ss_pred hcCCC-CccCCCHHHHHHHHHH
Q 012397 311 SAHYR-SPLNYSVLQLDSASDA 331 (464)
Q Consensus 311 ~~~~~-~~~~f~~~~~~~~~~~ 331 (464)
...+. ++..|+++.+.+..+.
T Consensus 383 ~lG~s~~~~~~~~~~L~~~nr~ 404 (567)
T PRK04156 383 EVGVKETDATISWENLYAINRK 404 (567)
T ss_pred HhCCCCCCcccCHHHHHHHHHH
Confidence 87665 8999999999877654
No 74
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=7.2e-19 Score=179.87 Aligned_cols=216 Identities=19% Similarity=0.126 Sum_probs=160.6
Q ss_pred CCeeEEEecccCccccchHHHHHHhhccC-CCCccEEEEeeeeeeCCcccccccCCccCHHHHHHhcCchhHHHHHhhc-
Q 012397 235 SKFDIHGGGIDLIFPHHENEIAQSCAACQ-DSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA- 312 (464)
Q Consensus 235 ~~~~i~~~G~D~~~~h~~~~~a~~~a~~~-~~~~~~~~~~~~v~~~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~- 312 (464)
.|+|+.+.|+|++..|..+......|+.. +.|++-.-.|||++++++|||||.||+.++++.++++|+|+.|+.|+-.
T Consensus 662 YPiDlrvsGKDLi~NHLtfflynHvAl~~~k~WPkgiraNGHLmLNsEKMSKSTGNfmTL~qaieKFgad~tRlalAdaG 741 (1080)
T KOG0437|consen 662 YPIDLRVSGKDLIPNHLTFFLYNHVALFPEKKWPKGIRANGHLMLNSEKMSKSTGNFMTLEQAIEKFGADGTRLALADAG 741 (1080)
T ss_pred cceeeeeccccccccceeEeeeehhhhcccccCccceeeCceEEecchhhccccCCeeeHHHHHHHhCccceeeeeeccc
Confidence 39999999999999999887776777664 4666666779999999999999999999999999999999999999986
Q ss_pred CCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHH
Q 012397 313 HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQ 392 (464)
Q Consensus 313 ~~~~~~~f~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~ 392 (464)
+--.|.+|......++.=.+......+..++........+....-.|+-+..+++.++....+++ ++..+..|+..=++
T Consensus 742 D~veDANF~ea~AnAaILRLyt~~ew~eEm~~~~s~LrtGp~~~FaDrvf~nemN~~i~~t~~ay-e~~~fk~aLK~Gfy 820 (1080)
T KOG0437|consen 742 DGVEDANFVEANANAAILRLYTYVEWIEEMCENRSSLRTGPASTFADRVFENEMNALIAKTERAY-EDTLFKDALKYGFY 820 (1080)
T ss_pred CCcccchhHHhcccHHHHHHHHHHHHHHHHHhhHHhhccCchhhHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhhhH
Confidence 66789999987766665555544444443332211111222233468889999999999999999 88899999987566
Q ss_pred HHHHHHHHHhhhhc-ccCchhhhhhHHHHHHHHHHHHHHHHHhhc-cCCCccHHHHHHHhhhhHhHhcCCCCC
Q 012397 393 DALKFINSSLNMLK-KKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVKTAFLVLLHVFFDDSPF 463 (464)
Q Consensus 393 ~l~~~~n~~~~~~~-~~~~~~~~~~r~~~~~~~~~~l~~~l~lLg-i~p~~~~e~i~~~l~~~~~~~~~~~~~ 463 (464)
++...=..|-..|- +. .| ..+...++.-..||. |.|+ .+|.||+.+...-...+--|||
T Consensus 821 d~qaArD~Yrel~g~~m-------h~----dLv~r~ietqtlLLaPi~Ph-~aeyiw~~~~~~~~~v~~~wP~ 881 (1080)
T KOG0437|consen 821 DLQAARDMYRELCGEGM-------HR----DLVFRFIETQTLLLAPICPH-LAEYIWRTVLKKNFSVNVGWPF 881 (1080)
T ss_pred HHHHHHHHHHHHhcccc-------cH----HHHHHHHHHHHHHHhccchH-HHHHHHHHhccCCceeecCCCC
Confidence 66554444433332 10 01 245567777788888 9999 9999999886655555557776
No 75
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=99.79 E-value=4e-17 Score=168.60 Aligned_cols=251 Identities=17% Similarity=0.154 Sum_probs=150.0
Q ss_pred CCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 012397 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (464)
Q Consensus 46 ~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~~ 125 (464)
.|+|+|.|||||+|+++....+|| ...|.=++.+--|| . . .....+.+.+.++|++||+.++
T Consensus 7 APsPtG~lHiG~~rtal~n~l~Ar--~~~G~~iLRieDtD---~---~----------R~~~~~~~~i~~~L~wlGl~~d 68 (470)
T TIGR00464 7 APSPTGYLHIGGARTALFNYLFAK--HTGGEFILRIEDTD---L---E----------RNIEEAEEAILEGLKWLGISWD 68 (470)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHH--HcCCEEEEEeCcCC---C---c----------cCChHHHHHHHHHHHHCCCCCC
Confidence 488999999999999999999999 66777666666665 1 1 1233578899999999999975
Q ss_pred CCCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCC--------------CC----CCCCCCCccccc-cccCCCcc
Q 012397 126 TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK--------------SP----NYGRLSGQRLEN-NRAGERVA 186 (464)
Q Consensus 126 ~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~--------------~~----~~g~l~~~~~~~-~~~g~~~~ 186 (464)
+...++|++.+.+++...+|+++|.+| .|||..+ .| .|..++..+..+ ...|....
T Consensus 69 e~~~~QS~r~~~y~~~~~~L~~~g~aY-----~C~ct~~~l~~~r~~~~~~~~~~~y~~~cr~l~~~~~~~~~~~g~~~~ 143 (470)
T TIGR00464 69 EGPYYQSQRLDIYKKYAKELLEEGLAY-----RCYCSKERLERLREEQKANKETPRYDGRCRNLHEEEIENKLAKGIPPV 143 (470)
T ss_pred CCeeehhCCHHHHHHHHHHHHHcCCEE-----ecCCChHHHHHHHHHHhhCCCCCCCCCCcccCCHHHHHhHHhcCCCce
Confidence 567788999999999999999999999 5565432 11 122222211110 01111100
Q ss_pred cCCcccCcccc-cccccccCCCCc--------ccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCccccchHHHHH
Q 012397 187 VDSRKRNPADF-ALWKAAKAGEPS--------WDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257 (464)
Q Consensus 187 ~~~~k~~~~d~-~~w~~~~~g~~~--------~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h~~~~~a~ 257 (464)
+. .|. |.+. ..|...-.|... +.....+|.|+|+.++... ....+ ++-.+.|.|+.. |.......
T Consensus 144 iR-~k~-~~~~~~~~~D~~~G~~~~~~~~~~D~Vl~RsdG~ptY~~A~~vd-D~~~~--ithvIrG~d~~~-~t~~~~~l 217 (470)
T TIGR00464 144 VR-FKI-PQEAVVSFNDQVRGEITFQNSELDDFVILRSDGSPTYNFAVVVD-DYLMK--ITHVIRGEDHIS-NTPKQILI 217 (470)
T ss_pred EE-EEc-CCCCceeEEecccceEEecCccCCCeEEEecCCCcccccHHHHH-HHhCC--CCEEEECchhhc-CHHHHHHH
Confidence 00 000 0000 011111111110 1112345778888654321 12233 555558899442 12233444
Q ss_pred HhhccCCCCccEEEEeeeee-eCCcccccccCCccCHHHHHHh-cCc------------------------hhHHHHHhh
Q 012397 258 SCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITER-YHP------------------------LALRHFLIS 311 (464)
Q Consensus 258 ~~a~~~~~~~~~~~~~~~v~-~~G~KmSks~gn~i~~~dll~~-~~~------------------------dalR~~ll~ 311 (464)
..+++..+ + .+.|..+++ .+|+|||||+| .++++++++. |-+ +++|++.++
T Consensus 218 ~~aLg~~~-p-~~~H~p~l~~~~g~kLSKR~g-~~~l~~l~~~g~~p~a~~~~~~~lG~~~~~~~e~~~~~~~i~~f~l~ 294 (470)
T TIGR00464 218 YQALGWKI-P-VFAHLPMILDEDGKKLSKRDG-ATSIMQFKEQGYLPEALINYLALLGWSPPDDQEFFSLEELIEIFSLN 294 (470)
T ss_pred HHHcCCCC-C-eEEEEeeeecCCCccccccCC-CccHHHHHHCCCCHHHHHHHHHHcCCCCCCccccCCHHHHHHhcCcc
Confidence 55666443 3 346766644 49999999999 6899999886 234 456666655
Q ss_pred cCCCCccCCCHHHHHHH
Q 012397 312 AHYRSPLNYSVLQLDSA 328 (464)
Q Consensus 312 ~~~~~~~~f~~~~~~~~ 328 (464)
....+++.||++.+.-.
T Consensus 295 ~~~~~~~~fd~~kL~~~ 311 (470)
T TIGR00464 295 RVSKSPAKFDWKKLQWL 311 (470)
T ss_pred cCCCCCCeecHHHHHHH
Confidence 54556777777775543
No 76
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=99.76 E-value=7.4e-18 Score=157.34 Aligned_cols=210 Identities=20% Similarity=0.189 Sum_probs=144.3
Q ss_pred EeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCC
Q 012397 44 VCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCL 123 (464)
Q Consensus 44 ~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~ 123 (464)
=|+|+|||++||||+|+++..+++|| ++++.++..+||.+.+.+ .....+.+.|.++|++||+.
T Consensus 5 RfaPsPtG~lHiG~~rtal~~~l~Ar-----~~~G~~ilRieDtD~~r~-----------~~~~~~~~~i~~dL~wLGl~ 68 (240)
T cd09287 5 RFAPNPNGPLHLGHARAAILNGEYAK-----MYGGKFILRFDDTDPRTK-----------RPDPEAYDMIPEDLEWLGVK 68 (240)
T ss_pred eCCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEeeCcCCCCcc-----------cchHHHHHHHHHHHHHcCCC
Confidence 37899999999999999999999999 577788888888876442 12333556699999999997
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCCCCCCCCCCCccccccccCCCcccCCcccCcccccccccc
Q 012397 124 PPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAA 203 (464)
Q Consensus 124 ~~~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~~g~l~~~~~~~~~~g~~~~~~~~k~~~~d~~~w~~~ 203 (464)
+ |..+++|++.+.++++.++|+++|.+|.. +.. | .||.+|
T Consensus 69 ~-d~~~~qS~r~~~y~~~~~~Li~~G~aY~~-----------~~~-------------~------------~~~~i~--- 108 (240)
T cd09287 69 W-DEVVIASDRIELYYEYARKLIEMGGAYVH-----------PRT-------------G------------SKYRVW--- 108 (240)
T ss_pred C-CCccchhccHHHHHHHHHHHHHcCCcccC-----------ccc-------------C------------CcEEEE---
Confidence 5 77889999999999999999999999950 000 1 022222
Q ss_pred cCCCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCccccchHHHHHHhhccCCCCccEEEEeeeeeeCCccc
Q 012397 204 KAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKM 283 (464)
Q Consensus 204 ~~g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h~~~~~a~~~a~~~~~~~~~~~~~~~v~~~G~Km 283 (464)
|+|+.++... .... .++..+-|.|+...-. .......+++.++|. +.|...++.+|+||
T Consensus 109 ---------------ptY~la~vVD-D~~~--gIThViRg~d~~~~t~-~q~~l~~~Lg~~~P~--~~H~pll~~~~~kL 167 (240)
T cd09287 109 ---------------PTLNFAVAVD-DHLL--GVTHVLRGKDHIDNTE-KQRYIYEYFGWEYPE--TIHWGRLKIEGGKL 167 (240)
T ss_pred ---------------Eccccceeee-cccc--CCCeEEechhhhhCCH-HHHHHHHHcCCCCCc--EEeeeeecCCCCee
Confidence 3333221000 0011 3556667889442211 344555666655443 36778888899999
Q ss_pred ccccCC---------------ccCHHHHHH-hcCchhHHHHHhhcC-CCCccCCCHHHHHHHHH
Q 012397 284 SKSLGN---------------FFTIRQITE-RYHPLALRHFLISAH-YRSPLNYSVLQLDSASD 330 (464)
Q Consensus 284 Sks~gn---------------~i~~~dll~-~~~~dalR~~ll~~~-~~~~~~f~~~~~~~~~~ 330 (464)
|||++. ..++..+.+ .+.|++++-|++... -..+..++++.+....+
T Consensus 168 SKR~~~~~i~~~~~~~w~dp~~~~~~~lr~~G~~p~ai~~~~~~lG~s~~~~~~~~~~l~~~~r 231 (240)
T cd09287 168 STSKIRKGIESGEYEGWDDPRLPTLRALRRRGIRPEAIRDFIIEVGVKQTDATISWENLYAINR 231 (240)
T ss_pred ccccccccccccccccccCcchHHHHHHHHCCCCHHHHHHHHHHhCCCCCCCccCHHHHHHHHH
Confidence 999842 134555554 589999999887763 35777999998876544
No 77
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=99.76 E-value=1.7e-16 Score=164.05 Aligned_cols=234 Identities=18% Similarity=0.195 Sum_probs=138.7
Q ss_pred CCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 012397 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (464)
Q Consensus 46 ~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~~ 125 (464)
.|+|+|.|||||+|+++....+|| +..|.=++.+--||. ......+.+.+.++|++||+.++
T Consensus 10 APSPtG~lHiG~~rtal~n~l~Ar--~~~G~fiLRieDtD~----------------~R~~~~~~~~i~~~L~wlGl~~D 71 (476)
T PRK01406 10 APSPTGYLHIGGARTALFNWLFAR--HHGGKFILRIEDTDQ----------------ERSTEEAEEAILEGLKWLGLDWD 71 (476)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHH--HcCCEEEEEeCcCCC----------------CCCChHHHHHHHHHHHHCCCCCC
Confidence 488999999999999999999999 677877777666662 12234578899999999999975
Q ss_pred CC-------CCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCC--------------CC----CCCCCCCcccc-cc
Q 012397 126 TY-------QPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK--------------SP----NYGRLSGQRLE-NN 179 (464)
Q Consensus 126 ~~-------~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~--------------~~----~~g~l~~~~~~-~~ 179 (464)
+. ..++|++.+.+++..++|+++|.+| .|||..+ .+ .|..++..+.. .+
T Consensus 72 e~p~~~~~gpy~QS~r~~~y~~~~~~L~~~g~aY-----~C~cs~eel~~~r~~~~~~~~~~~y~~~cr~~~~~~~~~~~ 146 (476)
T PRK01406 72 EGPDGGPYGPYRQSERLDIYKEYAEQLLEEGKAY-----YCYCTPEELEAMREEQRAAGEPPRYDGRCRDLTKEEVAARL 146 (476)
T ss_pred CCCccCCCCceehhcCHHHHHHHHHHHHHcCCee-----ecCCCHHHHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHH
Confidence 44 4688899999999999999999999 5555431 01 12223322111 11
Q ss_pred ccCCCcccCCcccCccc-ccccccccCCCC--------cccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCcccc
Q 012397 180 RAGERVAVDSRKRNPAD-FALWKAAKAGEP--------SWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPH 250 (464)
Q Consensus 180 ~~g~~~~~~~~k~~~~d-~~~w~~~~~g~~--------~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h 250 (464)
.+|....+. .| .|.+ -..|...-.|.+ .+.....+|.|+|+.+.. ...+.++ ++-.+.|.||+..
T Consensus 147 ~~g~~~~iR-~k-~p~~~~~~~~D~i~G~~~~~~~~~~D~Vl~RsDG~ptY~~a~v-VdD~~~~--ithvIrG~d~~~~- 220 (476)
T PRK01406 147 AAGEPPVIR-FK-VPDEGEVVFDDLVRGEIEFPNSELDDFVILRSDGTPTYNFAVV-VDDHLMG--ITHVIRGEDHLSN- 220 (476)
T ss_pred hCCCCeeEE-EE-cCCCCceEEEEeccceEEeccccCCCcEEEecCCCccccchHH-HHHHHcC--CCEEEECchhhcC-
Confidence 122110000 00 0000 001111101111 011123456777776532 1223344 4444578893321
Q ss_pred chHHHHHHhhccCCCCccEEEEeeeee-eCCcccccccCCccCHHHHHHh-cCchhHHHHHhh
Q 012397 251 HENEIAQSCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITER-YHPLALRHFLIS 311 (464)
Q Consensus 251 ~~~~~a~~~a~~~~~~~~~~~~~~~v~-~~G~KmSks~gn~i~~~dll~~-~~~dalR~~ll~ 311 (464)
.-.......++|..+ +. +.|..+++ .+|+|||||+| .++++++++. |-+.|+.-|++.
T Consensus 221 t~~q~~l~~alG~~~-p~-~~H~pli~~~~g~klSKR~g-~~~l~~l~~~G~~p~Ai~n~l~~ 280 (476)
T PRK01406 221 TPKQILLYEALGWEV-PV-FAHLPLILGPDGKKLSKRHG-ATSVEQYRDMGYLPEALLNYLAL 280 (476)
T ss_pred HHHHHHHHHHhCCCC-Ce-EEEeeeeeCCCCCcccCcCC-ccCHHHHHHCCCCHHHHHHHHHH
Confidence 112344455666543 33 46766754 48999999999 6899999985 456555555543
No 78
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=99.73 E-value=4.9e-17 Score=164.31 Aligned_cols=244 Identities=16% Similarity=0.185 Sum_probs=150.3
Q ss_pred CCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 012397 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (464)
Q Consensus 46 ~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~~ 125 (464)
.|+|+|.|||||+|+++....+|| +..|.=++.+--||. .| ....+.+.+.++|++||+.+
T Consensus 5 APSPTG~LHiG~artAL~n~l~Ar--~~gG~fiLRiEDTD~------~R----------~~~e~~~~I~~~L~WlGl~w- 65 (433)
T PRK12410 5 APSPTGDMHIGNLRAAIFNYIVAK--QQNEDFLIRIEDTDK------ER----------NIEGKDKEILEILNLFGISW- 65 (433)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHH--HcCCEEEEEeCcCCC------Cc----------CChHHHHHHHHHHHHcCCCC-
Confidence 488999999999999999999999 777887887777762 22 22357789999999999997
Q ss_pred CCCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCC--------------C----CCCCCCCCccccccccCCCccc
Q 012397 126 TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK--------------S----PNYGRLSGQRLENNRAGERVAV 187 (464)
Q Consensus 126 ~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~--------------~----~~~g~l~~~~~~~~~~g~~~~~ 187 (464)
|...++|++.+.+.+..++|+++|.+| .|||..+ - ..|..++..+. +..|....+
T Consensus 66 De~y~QSeR~~~Y~~~a~~Li~~G~AY-----~C~cs~eel~~~r~~~~~~g~~~~Y~g~cr~l~~~e~--~~~g~~~~i 138 (433)
T PRK12410 66 DKLVYQSENLKFHRQMAEKLLSEKKAF-----ACFCSEEELEAKKEKAKNEKKPYRYDGTCENLEDDEV--LNCNKPFVV 138 (433)
T ss_pred CCCeehhccHHHHHHHHHHHHHcCCee-----eecCCHHHHHHHHHHHhhcCCCCCCCchhhCCCHhHH--HhcCCCeEE
Confidence 667788999999999999999999999 5555432 0 01222222111 111110000
Q ss_pred CCcccCcccccccccccCCCCc--------ccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCccccchHH---HH
Q 012397 188 DSRKRNPADFALWKAAKAGEPS--------WDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENE---IA 256 (464)
Q Consensus 188 ~~~k~~~~d~~~w~~~~~g~~~--------~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h~~~~---~a 256 (464)
. .|. |.....|...-.|.+. +..-..++.|+|+.++... .... .++-.+-|.| |..+. ..
T Consensus 139 R-~k~-p~~~~~f~D~v~G~i~~~~~~~~D~Vi~R~Dg~PtY~fA~vVD-D~~m--gIThViRG~d----~l~~tp~Qi~ 209 (433)
T PRK12410 139 R-LKK-PNHTMSFTDAIKGEVSFEPDEIDSFVILRADKTPTYNFACAVD-DMLY--DISLIIRGED----HVSNTPKQIL 209 (433)
T ss_pred E-EEc-CCCceeeeeccceeEEeccccCCCeEEEcCCCCccccccchhc-hhhc--CCCEEEechh----hhhCcHHHHH
Confidence 0 000 0000011111011110 1112235678877654211 1123 3556666889 55443 34
Q ss_pred HHhhccCCCCccEEEEeeeeee-CCcccccccCCccCHHHHHH-hcCchhHHHHHhhcCC-CCccCCCHHHHH
Q 012397 257 QSCAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITE-RYHPLALRHFLISAHY-RSPLNYSVLQLD 326 (464)
Q Consensus 257 ~~~a~~~~~~~~~~~~~~~v~~-~G~KmSks~gn~i~~~dll~-~~~~dalR~~ll~~~~-~~~~~f~~~~~~ 326 (464)
+..|++.++|+. +.|...++. +|+|||||.|. +++.++.+ .|.|+|++-|++...+ ..+--|+.+++.
T Consensus 210 Ly~aLg~~~pp~-f~Hlpli~~~~g~KLSKR~~~-~~v~~~r~~G~~PeAi~n~l~~lG~~~~~e~~~~~eli 280 (433)
T PRK12410 210 IREALGYNKEIT-YAHLPIILNEEGKKMSKRDNA-SSVKWLLEQGFLPSAIANYLILLGNKTPKEIFTLEEAI 280 (433)
T ss_pred HHHHcCCCCCCe-EEEeeeeeCCCCCeeecccCh-hhHHHHHHCCCCHHHHHHHHHHhCCCCcccccCHHHHH
Confidence 445666554443 577777765 99999999987 67888877 5999999999987532 123335555544
No 79
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=99.72 E-value=8e-17 Score=163.50 Aligned_cols=246 Identities=18% Similarity=0.163 Sum_probs=150.4
Q ss_pred CCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 012397 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (464)
Q Consensus 46 ~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~~ 125 (464)
.|+|+|.|||||||+++....+|| +..|.=++.|--|| . .++ .+.+.+.|.++|++|||.+
T Consensus 8 APSPTG~lHiG~artAL~n~l~Ar--~~gG~fiLRIEDTD---~---~Rs----------~~~~~~~I~e~L~wLGI~~- 68 (445)
T PRK12558 8 APSPTGYLHVGNARTALLNWLYAR--KHGGKFILRIDDTD---L---ERS----------KQEYADAIAEDLKWLGINW- 68 (445)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEeccCC---c---ccc----------hHHHHHHHHHHHHHcCCCC-
Confidence 488999999999999999999888 56676666666665 2 222 2568889999999999996
Q ss_pred CCCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCC--------------CC----CCCCCCCccccc-cccCCCcc
Q 012397 126 TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK--------------SP----NYGRLSGQRLEN-NRAGERVA 186 (464)
Q Consensus 126 ~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~--------------~~----~~g~l~~~~~~~-~~~g~~~~ 186 (464)
|...++|+..+.+++.+++|.++|++| .|||... .+ .|..++..+... ...|....
T Consensus 69 De~y~QSer~~~y~~~~e~L~e~G~AY-----~C~Ct~eel~~~r~~~~~~~~~~~y~~~cr~l~~~~~~~~~~~g~~~~ 143 (445)
T PRK12558 69 DRTFRQSDRFDRYDEAAEKLKAAGRLY-----PCYETPEELELKRKIQLSRGLPPIYDRAALKLTEEEKAALEAEGRKPH 143 (445)
T ss_pred CccccHHHHHHHHHHHHHHHHHCCCEE-----EecCchHHHHHHHHHHHhCCCCCCCCcccccCCHHHHHhHHhcCCCce
Confidence 667888888889999999999999999 5555442 11 122232211111 01121100
Q ss_pred cCCcccCcccccccccccCCCCc--------ccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCccccchHH---H
Q 012397 187 VDSRKRNPADFALWKAAKAGEPS--------WDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENE---I 255 (464)
Q Consensus 187 ~~~~k~~~~d~~~w~~~~~g~~~--------~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h~~~~---~ 255 (464)
+. .+. +..-..|...-.|.++ +..-..++.|+|+.++... .... .++-.+-|.| |..+. .
T Consensus 144 iR-~k~-~~~~~~~~D~i~G~~~~~~~~~~D~Vi~R~dg~PtY~fA~vVD-D~~m--~ITHViRG~d----~l~~t~~q~ 214 (445)
T PRK12558 144 WR-FKL-DDEPISWDDLIRGEQSIDAASLSDPVLIRADGSYLYTLPSVVD-DIDM--GITHIIRGED----HVTNTAVQI 214 (445)
T ss_pred EE-Eec-CCCceEEEEEeeeEeecccccCCCeEEEecCCCccccccceec-cccC--CCCEEEechh----hhhCCHHHH
Confidence 00 000 0000112111111111 0111235667776553210 1112 3556666889 54443 3
Q ss_pred HHHhhccCCCCccEEEEeeeeee-CCcccccccCCccCHHHHHH-hcCchhHHHHHhhc--CCCCccCCCHHHHHH
Q 012397 256 AQSCAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITE-RYHPLALRHFLISA--HYRSPLNYSVLQLDS 327 (464)
Q Consensus 256 a~~~a~~~~~~~~~~~~~~~v~~-~G~KmSks~gn~i~~~dll~-~~~~dalR~~ll~~--~~~~~~~f~~~~~~~ 327 (464)
.+..|++.++| .+.|.+.++. +|+|+|||.|. +++.++.+ .|.|+|++-|++.. +...+.-|+.+++.+
T Consensus 215 ~l~~alg~~~P--~f~H~pli~~~~g~KLSKR~g~-~sv~~~r~~G~~Peai~n~la~lG~s~~~~e~~~~~eli~ 287 (445)
T PRK12558 215 QIFEALGAKPP--VFAHLSLLTGADGKGLSKRLGG-LSIRSLREDGIEPMAIASLLARLGTSDPVEPYTSMEELAE 287 (445)
T ss_pred HHHHHhCCCCC--eEEEcccccCCCcccccccCCC-cCHHHHHHCCCCHHHHHHHHHHHcCCCCCcccCCHHHHHH
Confidence 44455654443 3578888877 88999999987 68888887 59999999999874 333344478887764
No 80
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=99.68 E-value=1.5e-15 Score=155.99 Aligned_cols=245 Identities=16% Similarity=0.091 Sum_probs=151.2
Q ss_pred CCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 012397 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (464)
Q Consensus 46 ~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~~ 125 (464)
.|+|+|.|||||+|+++....+|| +..|.=++.+--|| ..| ....+.+.+.++|++||+.++
T Consensus 10 APSPTG~lHiG~artAL~n~l~Ar--~~gG~fiLRIEDTD------~~R----------~~~~~~~~i~~~L~WLGl~wD 71 (513)
T PRK14895 10 APSPTGFLHIGSARTALFNYLFAR--HHNGKFLLRIEDTD------KER----------STKEAVEAIFSGLKWLGLDWN 71 (513)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHH--HcCCEEEEEECCCC------ccc----------cChHHHHHHHHHHHHcCCCCC
Confidence 488999999999999999999999 66777777776665 122 234578899999999999985
Q ss_pred CCCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCC-----------C---CC----CCCCCCccccccccCCCccc
Q 012397 126 TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK-----------S---PN----YGRLSGQRLENNRAGERVAV 187 (464)
Q Consensus 126 ~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~-----------~---~~----~g~l~~~~~~~~~~g~~~~~ 187 (464)
....++|++.+.+++..++|+++|.+| .|||... | +. |..++... ...|....+
T Consensus 72 e~py~QSeR~~~Y~~~a~~Li~~G~AY-----~CfCt~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~---~~~~~~~~i 143 (513)
T PRK14895 72 GEVIFQSKRNNLYKEAALKLLQNGKAY-----YCFTRQEEIERQRQQALENKQHFIFNSEWRDKDPSI---YPTDIKPVI 143 (513)
T ss_pred CCceeEeCcHHHHHHHHHHHHHcCCeE-----EecCcHHHHHHHHHhhhccCCCCCCChhhcccChhh---hhcCCCeeE
Confidence 566788999999999999999999999 5666542 0 11 11111110 000100000
Q ss_pred CCcccCcccccccccccCCCCcc--------cCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCccccchHH---HH
Q 012397 188 DSRKRNPADFALWKAAKAGEPSW--------DSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENE---IA 256 (464)
Q Consensus 188 ~~~k~~~~d~~~w~~~~~g~~~~--------~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h~~~~---~a 256 (464)
. .|.....-..|...-.|.++. ..-..+|.|+|+.++.. -....+ ++-.+.|.| |..+. ..
T Consensus 144 R-~k~p~~~~~~~~D~v~G~~~~~~~~~~D~Vi~RsDG~ptY~~a~vV-DD~~m~--ithVIRG~d----~~~~t~~q~~ 215 (513)
T PRK14895 144 R-LKTPREGSITIHDTLQGEVVIENSHIDDMVLLRADGTATYMLAVVV-DDHDMG--ITHIIRGDD----HLTNAARQLA 215 (513)
T ss_pred E-EEcCCCCceEEEeecccceecccccCCCcEEEEeCCCcchhhHHHH-HHHhcC--CCEEEECch----HhhhHHHHHH
Confidence 0 000000001121111122111 11234566777765321 122233 444558899 55443 44
Q ss_pred HHhhccCCCCccEEEEeeeee-eCCcccccccCCccCHHHHHH-hcCchhHHHHHhhc--CCCCccCCCHHHHHH
Q 012397 257 QSCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITE-RYHPLALRHFLISA--HYRSPLNYSVLQLDS 327 (464)
Q Consensus 257 ~~~a~~~~~~~~~~~~~~~v~-~~G~KmSks~gn~i~~~dll~-~~~~dalR~~ll~~--~~~~~~~f~~~~~~~ 327 (464)
...+++..+ + .+.|..+|+ .+|+|||||.|. +.+.++.+ .|-|+|++-|++.- +.+..-.|+.+++.+
T Consensus 216 l~~aLG~~~-p-~~~H~plv~~~~g~KLSKR~g~-~~i~~~r~~G~~Peai~n~la~LG~s~~~~e~~~~~el~~ 287 (513)
T PRK14895 216 IYQAFGYAV-P-SMTHIPLIHGADGAKLSKRHGA-LGIEAYKDMGYLPESLCNYLLRLGWSHGDDEIISMTQAID 287 (513)
T ss_pred HHHHcCCCC-C-eEEEEEeEEcCCCCccccccCc-hhHHHHHHCCCCHHHHHHHHHHhCCCCCCcCCCCHHHHHh
Confidence 445566443 3 357888988 599999999998 57777776 58999999999853 233334577776653
No 81
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=99.68 E-value=7.6e-16 Score=143.32 Aligned_cols=176 Identities=19% Similarity=0.158 Sum_probs=123.1
Q ss_pred CCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 012397 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (464)
Q Consensus 46 ~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~~ 125 (464)
.|+|+|+||+||+|++++...+|| +..|.=++.+.-+|. .| ....+.+.|.++|++||+.++
T Consensus 7 APsPtG~lHlG~~r~al~n~l~Ar--~~~G~~iLRieDtD~------~R----------~~~~~~~~I~~dL~wlGl~wd 68 (230)
T cd00418 7 APSPTGYLHIGHARTALFNFAFAR--KYGGKFILRIEDTDP------ER----------SRPEYVESILEDLKWLGLDWD 68 (230)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHH--HcCCeEEEEeCcCCC------CC----------CChHHHHHHHHHHHHcCCCCC
Confidence 588999999999999999999999 667777777766662 11 223578899999999999975
Q ss_pred CCCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCCCCCCCCCCCccccccccCCCcccCCcccCcccccccccccC
Q 012397 126 TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKA 205 (464)
Q Consensus 126 ~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~~g~l~~~~~~~~~~g~~~~~~~~k~~~~d~~~w~~~~~ 205 (464)
....++|++.+.+++..++|+++| +-.-|...++ ++ |
T Consensus 69 ~~~~~QS~r~~~y~~~~~~L~~~g------g~p~Y~la~v----------vD------------------D--------- 105 (230)
T cd00418 69 EGPYRQSDRFDLYRAYAEELIKKG------GYPLYNFVHP----------VD------------------D--------- 105 (230)
T ss_pred CCeeehhcCHHHHHHHHHHHHHcC------CCcccccccc----------cc------------------c---------
Confidence 447788999999999999999999 0011111000 00 0
Q ss_pred CCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCccccchHHHHHHhhccCCCCccEEEEeeeeee-CCcccc
Q 012397 206 GEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTN-NNEKMS 284 (464)
Q Consensus 206 g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h~~~~~a~~~a~~~~~~~~~~~~~~~v~~-~G~KmS 284 (464)
... .++..+-|+|++.... ....+..+++.++| . +.|...++. +|+|||
T Consensus 106 -------------------------~~~--gIThViRG~D~l~st~-~q~~l~~~Lg~~~P-~-~~H~pll~~~~g~KLS 155 (230)
T cd00418 106 -------------------------ALM--GITHVLRGEDHLDNTP-IQDWLYEALGWEPP-R-FYHFPRLLLEDGTKLS 155 (230)
T ss_pred -------------------------ccc--CCCEEEECHhhhhchH-HHHHHHHHcCCCCC-e-EEEeeeeeCCCCCCcc
Confidence 001 2556666888432222 23344455555433 3 477777776 779999
Q ss_pred cccCCccCHHHHHH-hcCchhHHHHHhhcC
Q 012397 285 KSLGNFFTIRQITE-RYHPLALRHFLISAH 313 (464)
Q Consensus 285 ks~gn~i~~~dll~-~~~~dalR~~ll~~~ 313 (464)
||.|+ +++.++.+ .+.|++++-|++...
T Consensus 156 Kr~~~-~~i~~~r~~G~~p~ai~~~l~~lG 184 (230)
T cd00418 156 KRKLN-TTLRALRRRGYLPEALRNYLALIG 184 (230)
T ss_pred CcCCC-cCHHHHHHCCCcHHHHHHHHHHcC
Confidence 99999 68888776 499999999988643
No 82
>PLN02627 glutamyl-tRNA synthetase
Probab=99.67 E-value=8.6e-16 Score=157.93 Aligned_cols=254 Identities=17% Similarity=0.135 Sum_probs=154.5
Q ss_pred CcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 012397 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDM 117 (464)
Q Consensus 38 ~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l 117 (464)
++|++=+ .|+|+|.|||||+|+++....+|| +..|.=++.+--||- . .....+.+.|.++|
T Consensus 44 ~~vr~RF-APSPTG~LHiG~aRtAL~n~l~Ar--~~gG~fiLRIEDTD~------~----------R~~~e~~~~I~~~L 104 (535)
T PLN02627 44 GPVRVRF-APSPTGNLHVGGARTALFNYLFAR--SKGGKFVLRIEDTDL------A----------RSTKESEEAVLRDL 104 (535)
T ss_pred CceEEEe-CCCCCCCccHHHHHHHHHHHHHHH--HhCCEEEEEeCcCCC------C----------CCChHHHHHHHHHH
Confidence 3444434 489999999999999999999999 777877777777661 1 22345788999999
Q ss_pred HhcCCCCCCC--------CCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCC-------------C-C----CCCCC
Q 012397 118 ADLQCLPPTY--------QPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK-------------S-P----NYGRL 171 (464)
Q Consensus 118 ~~lgi~~~~~--------~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~-------------~-~----~~g~l 171 (464)
++|||.+++. ..++|++.+.+.+..++|+++|.+| .|||..+ + + .|..+
T Consensus 105 ~WLGl~wDegp~~gg~~gpy~QSeR~~~Y~~~a~~Li~~G~AY-----~CfCs~eel~~~r~~~~~~~~~~~Yd~~cr~l 179 (535)
T PLN02627 105 KWLGLDWDEGPDVGGEYGPYRQSERNAIYKQYAEKLLESGHVY-----PCFCTDEELEAMKEEAELKKLPPRYTGKWATA 179 (535)
T ss_pred HHcCCCCCcCcccCCCCCCeeeeccHHHHHHHHHHHHHcCCee-----eccCChHHHHHHHHHHHhcCCCcCCCCccccC
Confidence 9999997432 2578899999999999999999999 5666542 1 1 13333
Q ss_pred CCccccc-cccCCCcccCCcccCcc-cccccccccCCCCc--------ccCCCCCCCCchhhHHHHHHHhhcCCCeeEEE
Q 012397 172 SGQRLEN-NRAGERVAVDSRKRNPA-DFALWKAAKAGEPS--------WDSPWGPGRPGWHIECSAMSAHYLSSKFDIHG 241 (464)
Q Consensus 172 ~~~~~~~-~~~g~~~~~~~~k~~~~-d~~~w~~~~~g~~~--------~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~ 241 (464)
+..+..+ ...|....+. .+ .|. .-..|...-.|..+ +..-..++.|+|+.++... .... .++-.+
T Consensus 180 ~~ee~~~~~~~g~~~~iR-~k-~p~~~~~~~~D~i~G~i~~~~~~~~D~Vi~R~DG~PtY~fA~vVD-D~~m--gITHVi 254 (535)
T PLN02627 180 SDEEVQAELAKGTPYTYR-FR-VPKEGSVKIDDLIRGEVSWNTDTLGDFVLLRSNGQPVYNFCVAVD-DATM--GITHVI 254 (535)
T ss_pred CHHHHHHHHhCCCCceEE-EE-cCCCCceEEEeeeeeeeeeccccCCCeEEEecCCCccccccceec-cccc--CCcEEE
Confidence 3222111 1112110000 00 000 00011111011110 1111235677777654211 1112 355666
Q ss_pred ecccCccccchHHH---HHHhhccCCCCccEEEEeeeeee-CCcccccccCCccCHHHHHH-hcCchhHHHHHhhcCCC-
Q 012397 242 GGIDLIFPHHENEI---AQSCAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITE-RYHPLALRHFLISAHYR- 315 (464)
Q Consensus 242 ~G~D~~~~h~~~~~---a~~~a~~~~~~~~~~~~~~~v~~-~G~KmSks~gn~i~~~dll~-~~~~dalR~~ll~~~~~- 315 (464)
-|.| |..+.+ .+..|++..+| .+.|...++. +|+|||||.|. +++.++.+ .|.|+|++-|++...+.
T Consensus 255 RG~D----~l~nTpkQi~ly~aLg~~~P--~f~Hlpli~~~~g~KLSKR~~~-~~v~~~r~~G~~PeAi~nyla~LGws~ 327 (535)
T PLN02627 255 RAEE----HLPNTLRQALIYKALGFPMP--RFAHVSLILAPDRSKLSKRHGA-TSVGQFREMGYLPDAMVNYLALLGWND 327 (535)
T ss_pred echh----hhcChHHHHHHHHHcCCCCC--eEEEccceeCCCCCccccccCC-ccHHHHHHCCCCHHHHHHHHHHhCCCC
Confidence 6889 555444 34455665554 3578888876 88899999877 68888877 59999999999865432
Q ss_pred --CccCCCHHHHHH
Q 012397 316 --SPLNYSVLQLDS 327 (464)
Q Consensus 316 --~~~~f~~~~~~~ 327 (464)
.+--|+.+++.+
T Consensus 328 ~~~~e~~~~~eli~ 341 (535)
T PLN02627 328 GTENEIFTLEELVE 341 (535)
T ss_pred CCCCCcCCHHHHHH
Confidence 234577776654
No 83
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=99.64 E-value=5.4e-15 Score=151.96 Aligned_cols=253 Identities=15% Similarity=0.127 Sum_probs=156.7
Q ss_pred CCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 012397 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (464)
Q Consensus 46 ~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~~ 125 (464)
+|+|+|.|||||||++++...+|| ...|.=++.+.-|| . ..-..+|.+.|.++|++||+.+
T Consensus 17 APsPtG~LHiGharaAlln~l~Ar--~~gG~~iLRiEDTD---p-------------~R~~~e~~~~I~~dL~WLGl~w- 77 (523)
T PLN03233 17 PPEPSGYLHIGHAKAALLNDYYAR--RYKGRLILRFDDTN---P-------------SKEKAEFEESIIEDLGKIEIKP- 77 (523)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEECCCC---C-------------CccchHHHHHHHHHHHHhCCCC-
Confidence 589999999999999999999999 56777777666665 2 2223458899999999999996
Q ss_pred CCCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCCC----------CCCCCCCCcc----ccccccC-----CCc-
Q 012397 126 TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS----------PNYGRLSGQR----LENNRAG-----ERV- 185 (464)
Q Consensus 126 ~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~----------~~~g~l~~~~----~~~~~~g-----~~~- 185 (464)
|....+|++.+.+.+...+|+++|.+| +++|..+. ..|..++..+ ..++..| ..+
T Consensus 78 D~~~~qSdr~~~y~~~a~~Li~~G~AY-----~C~cs~eel~~~r~~~~~~~~R~~s~ee~l~~~~~m~~G~~~~~~~~l 152 (523)
T PLN03233 78 DSVSFTSDYFEPIRCYAIILIEEGLAY-----MDDTPQEEMKKERADRAESKHRNQSPEEALEMFKEMCSGKEEGGAWCL 152 (523)
T ss_pred CCCccccccHHHHHHHHHHHHHcCCeE-----ecCCCHHHHHHHHhhhccCccccCCHHHHHHHHHHHhcccccCCCeEE
Confidence 677888999999999999999999999 45554320 0132222211 1111112 110
Q ss_pred --ccCC--cccCcccccccccccCCCCc-c-cCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCccccchHHHHHHh
Q 012397 186 --AVDS--RKRNPADFALWKAAKAGEPS-W-DSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSC 259 (464)
Q Consensus 186 --~~~~--~k~~~~d~~~w~~~~~g~~~-~-~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h~~~~~a~~~ 259 (464)
..+. ....-.|+.+.+.. +.+- + -..| .+.|+|+.++.. -.... .++-.+-|.|+...- ..+..+..
T Consensus 153 R~K~d~~~~n~~~~D~Vi~R~d--~~~h~~~Gd~~-~~~PtY~fA~~V-DD~l~--gITHviRg~E~~~~t-~~q~~l~~ 225 (523)
T PLN03233 153 RAKIDMQSDNGTLRDPVLFRQN--TTPHHRSGTAY-KAYPTYDLACPI-VDSIE--GVTHALRTTEYDDRD-AQFFWIQK 225 (523)
T ss_pred EEeCcccCCCCCCcCCEEEEEc--CCcccccCCcc-cceeccCCceee-ecccc--CCCeEEechhhhcCC-HHHHHHHH
Confidence 0010 00111455555432 1110 0 0122 345666544310 01112 244555577844222 23444455
Q ss_pred hccCCCCccEEEEeeeeeeCCccccccc------CCcc---------CHHHHHH-hcCchhHHHHHhhc-CCCCccCCCH
Q 012397 260 AACQDSNVSYWMHNGHVTNNNEKMSKSL------GNFF---------TIRQITE-RYHPLALRHFLISA-HYRSPLNYSV 322 (464)
Q Consensus 260 a~~~~~~~~~~~~~~~v~~~G~KmSks~------gn~i---------~~~dll~-~~~~dalR~~ll~~-~~~~~~~f~~ 322 (464)
+++...|. + .|.+.+.+.|.|||||+ .+.| ++..+.+ .|.|+|||-|++.. .-..+..+++
T Consensus 226 aLg~~~P~-~-~~f~rln~~~~kLSKR~l~~lV~~g~v~GWDDPRlpTi~~lrrrG~~peAi~~f~~~~G~s~~~~~i~~ 303 (523)
T PLN03233 226 ALGLRRPR-I-HAFARMNFMNTVLSKRKLTWFVDNGHVTGWDDARFPTIRGISRRGIDIDALKMFMCSQGASRRVVNLDW 303 (523)
T ss_pred HhCCCCCe-e-eeeEEECCCCCcccccCchhhhccCcccCccCCchHhHHHHHHCCCCHHHHHHHHHHhCCCCCCceecH
Confidence 66654433 3 44566777999999997 3334 4777776 59999999999987 4467889999
Q ss_pred HHHHHHHHH
Q 012397 323 LQLDSASDA 331 (464)
Q Consensus 323 ~~~~~~~~~ 331 (464)
+.+.+..+.
T Consensus 304 ~~l~~~nR~ 312 (523)
T PLN03233 304 AKFWAENKK 312 (523)
T ss_pred HHHHHHHHH
Confidence 999877653
No 84
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=99.64 E-value=2.6e-15 Score=145.11 Aligned_cols=219 Identities=16% Similarity=0.086 Sum_probs=134.2
Q ss_pred CCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 012397 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (464)
Q Consensus 46 ~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~~ 125 (464)
.|+|+|+|||||+|++++...+|| ...|.=++.+--+|. .| ...++.+.|.++|++||+.++
T Consensus 11 APSPTG~LHlG~~rtAL~n~l~Ar--~~~G~~iLRiEDtD~------~R----------~~~~~~~~I~~dL~wlGl~wD 72 (299)
T PRK05710 11 APSPSGPLHFGSLVAALGSWLDAR--AHGGRWLLRIEDIDP------PR----------EVPGAADAILADLEWLGLHWD 72 (299)
T ss_pred CcCCCCcccHHHHHHHHHHHHHHH--HcCCEEEEEECcCCC------Cc----------cchHHHHHHHHHHHHCCCCCC
Confidence 588999999999999999999999 556766666665552 11 223577899999999999975
Q ss_pred CCCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCCC------------C----CCCCCCCccccccccCCCcccCC
Q 012397 126 TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS------------P----NYGRLSGQRLENNRAGERVAVDS 189 (464)
Q Consensus 126 ~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~------------~----~~g~l~~~~~~~~~~g~~~~~~~ 189 (464)
....++|++.+.+++..++|+++|.+|. |||.... + .|..++..+.... --|+..+.
T Consensus 73 e~~~~QS~r~~~Y~~~~~~L~~~G~aY~-----C~Ctr~el~~~~~~~~~~~~~y~g~cr~~~~~~~~~~--~iRlk~~~ 145 (299)
T PRK05710 73 GPVLYQSQRHDAYRAALDRLRAQGLVYP-----CFCSRKEIAAAAPAPPDGGGIYPGTCRDLLHGPRNPP--AWRLRVPD 145 (299)
T ss_pred CCceEeeccHHHHHHHHHHHHHCCCcee-----cCCCHHHHHHHhhhccCCCCcCCCccccCCccccCCc--eEEEEcCC
Confidence 4567789999999999999999999993 4443210 0 1211211100000 00000000
Q ss_pred ----------------cccCcccccccccccCCCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCccccchH
Q 012397 190 ----------------RKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHEN 253 (464)
Q Consensus 190 ----------------~k~~~~d~~~w~~~~~g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h~~~ 253 (464)
....-.||.+++ .++.|+|+.++... .... .++-.+-|.|++..-. .
T Consensus 146 ~~~~~~D~~~G~~~~~~~~~~~D~Vi~R-------------~dg~ptY~lA~vVD-D~~~--gIThVvRG~D~l~~t~-~ 208 (299)
T PRK05710 146 AVIAFDDRLQGRQHQDLALAVGDFVLRR-------------ADGLFAYQLAVVVD-DALQ--GVTHVVRGADLLDSTP-R 208 (299)
T ss_pred CceEEEEecceeEeeCCCCCCCCEEEEe-------------cCCCccccchhHHh-cccC--CCCEEEeChhhhhcCH-H
Confidence 000112333333 35677777665321 1123 3556666889443222 2
Q ss_pred HHHHHhhccCCCCccEEEEeeeeee-CCcccccccCCccCHHHHHHhcCchhHHHHHhhc
Q 012397 254 EIAQSCAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 312 (464)
Q Consensus 254 ~~a~~~a~~~~~~~~~~~~~~~v~~-~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~ 312 (464)
...+..+++.++| . +.|.+.++. +|+|||||.|. ..+++ +.+.++ +..++...
T Consensus 209 Q~~l~~aLg~~~P-~-y~H~pll~~~~g~kLSKr~~~-~~i~~--~g~~p~-l~~~l~~l 262 (299)
T PRK05710 209 QIYLQQLLGLPTP-R-YLHLPLVLNADGQKLSKQNGA-PALDA--AGPLPV-LAAALRFL 262 (299)
T ss_pred HHHHHHHcCCCCC-e-EEEeecccCCCCCcccccCCc-cchhh--cCcCHH-HHHHHHHc
Confidence 3444556665543 3 477777754 99999999887 45666 677777 66666554
No 85
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=99.63 E-value=4.8e-15 Score=141.71 Aligned_cols=240 Identities=15% Similarity=0.035 Sum_probs=138.1
Q ss_pred CCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 012397 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (464)
Q Consensus 46 ~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~~ 125 (464)
.|+|+|.|||||+|++++...+|| +..|.=++.+--||. .| ....+.+.|.++|++||+.++
T Consensus 6 APSPtG~lHiG~~rtAL~n~l~Ar--~~gG~~iLRiEDtD~------~R----------~~~~~~~~I~~dL~wLGl~wD 67 (272)
T TIGR03838 6 APSPSGPLHFGSLVAALGSYLDAR--AHGGRWLVRIEDLDP------PR----------EVPGAADDILRTLEAYGLHWD 67 (272)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEeCcCCC------CC----------CChHHHHHHHHHHHHcCCCCC
Confidence 488999999999999999999999 667887777777762 11 123477889999999999974
Q ss_pred CCCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCC------------CC-CCCCCCCccccccccCCCcccCCccc
Q 012397 126 TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK------------SP-NYGRLSGQRLENNRAGERVAVDSRKR 192 (464)
Q Consensus 126 ~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~------------~~-~~g~l~~~~~~~~~~g~~~~~~~~k~ 192 (464)
....++|++.+.+++..++|+++|.+| .|||..+ |+ .|.. +. . ...|....+. .+.
T Consensus 68 e~~~~QS~r~~~Y~~~~~~L~~~G~aY-----~C~Ct~eel~~~~~~~~~~y~~~cr~-~~--~--~~~~~~~~~R-lk~ 136 (272)
T TIGR03838 68 GEVVYQSQRHALYQAALDRLLAAGLAY-----PCQCTRKEIAAAAGDGGGIYPGTCRN-GL--L--GRPARPAAWR-LRV 136 (272)
T ss_pred CCeeeeeCCHHHHHHHHHHHHHcCCEE-----ecCCCHHHHHHHhcCCCCCCCchhhc-cc--c--cccCCCceEE-Eec
Confidence 444588999999999999999999999 4444321 11 0111 00 0 0001100000 000
Q ss_pred CcccccccccccCCCC---------cccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCccccchHHHHHHhhccC
Q 012397 193 NPADFALWKAAKAGEP---------SWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQ 263 (464)
Q Consensus 193 ~~~d~~~w~~~~~g~~---------~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h~~~~~a~~~a~~~ 263 (464)
...+ ..|...-.|.. .+.....++.|+|+.++... .... .++-.+-|.|++..-. ....+..+++.
T Consensus 137 ~~~~-~~~~D~~~g~~~~~~~~~~~D~vi~R~Dg~ptY~fA~vVD-D~~~--gIThViRG~D~l~~t~-~q~~l~~aLg~ 211 (272)
T TIGR03838 137 PDGV-IAFDDRLQGPQQQDLAAAVGDFVLRRADGLFAYQLAVVVD-DAAQ--GITHVVRGADLLDSTP-RQIYLQRLLGL 211 (272)
T ss_pred CCCC-ceEEEeeeeEEEecCcccCCCEEEEecCCCccccChhhhh-cccC--CCCEEEeCHhhhhccH-HHHHHHHHhCC
Confidence 0000 00100000000 01112245678877664321 1223 3556666889432211 23444556665
Q ss_pred CCCccEEEEeeeee-eCCcccccccCCccCHHHHHHhcCchhHHHHHhhc--C-CCCccCCCHHHH
Q 012397 264 DSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA--H-YRSPLNYSVLQL 325 (464)
Q Consensus 264 ~~~~~~~~~~~~v~-~~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~--~-~~~~~~f~~~~~ 325 (464)
++| .+.|.+.++ .+|+|+|||+|- ..+++. -.+.++..++... . ....-.|+.+++
T Consensus 212 ~~P--~y~H~pll~~~~g~kLSKR~~~-~~i~~~---~~~~~~~~~l~~lG~~~~~~~~~~~~~~~ 271 (272)
T TIGR03838 212 PPP--RYLHLPLVVNADGEKLSKQNGA-PALDLS---HPLPALLAALRFLGLPPPPELAAASPAEL 271 (272)
T ss_pred CCC--eEEechhhhCCCCCeeeccCCc-cchhcC---CcHHHHHHHHHHcCCCCCcccccCCHHHh
Confidence 554 357777775 499999999887 344442 2344666665543 2 223346666654
No 86
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=7.8e-15 Score=149.90 Aligned_cols=253 Identities=17% Similarity=0.094 Sum_probs=146.4
Q ss_pred eCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCC
Q 012397 45 CGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLP 124 (464)
Q Consensus 45 ~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~ 124 (464)
-.|+|+|+|||||||+++....+|| ...|.=++.+--||- +.-...+.+.|.++|++||+.+
T Consensus 14 FAPsPtG~LHiG~artAl~N~~~Ar--~~~G~fiLRiEDTD~----------------~R~~~e~~~~I~~~L~WLGl~w 75 (472)
T COG0008 14 FAPSPTGYLHIGHARTALLNYLYAR--KYGGKFILRIEDTDP----------------ERETPEAEDAILEDLEWLGLDW 75 (472)
T ss_pred ECcCCCCccchHHHHHHHHHHHHHH--HhCCEEEEEecCCCC----------------CCCCHHHHHHHHHHHHhcCCCC
Confidence 3689999999999999999999999 778888888777762 1223357789999999999997
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCC-----------------CCC--CCCCCCccc-cccc-cCC
Q 012397 125 PTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK-----------------SPN--YGRLSGQRL-ENNR-AGE 183 (464)
Q Consensus 125 ~~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~-----------------~~~--~g~l~~~~~-~~~~-~g~ 183 (464)
+....++|++.+.+.+...+|+++|.+| .|||..+ |+. |-.++..+. .... .+.
T Consensus 76 de~~~~QS~r~~~Y~~~~~~Li~~G~AY-----~c~ct~eele~~R~~~~~~g~~p~~y~r~~~~L~~~~~~~~~~~~~~ 150 (472)
T COG0008 76 DEGPYYQSERFDIYYEYAEKLIEKGKAY-----VCYCTPEELEEMRELRGALGEPPPSYDRDERNLTLFEKMADLGEGGP 150 (472)
T ss_pred CCceeehhhhHHHHHHHHHHHHHCCCeE-----EecCCHHHHHHHHHHHhhcCCCCCCCCchhhccchHHHHhhcccCCC
Confidence 5447899999999999999999999999 6666551 110 111111000 0000 011
Q ss_pred C---cccCCcccCc--ccccccccccCCCCcc-cCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCccccchHHHHH
Q 012397 184 R---VAVDSRKRNP--ADFALWKAAKAGEPSW-DSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257 (464)
Q Consensus 184 ~---~~~~~~k~~~--~d~~~w~~~~~g~~~~-~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h~~~~~a~ 257 (464)
. +..+....++ .|...-+-.-...... ...-..+.|+|+.++. .-.+..| ++-.+-|.|++..-. ....+
T Consensus 151 ~viR~k~~~~~~~~~~~D~v~g~i~~~~~~~~dv~~r~dg~ptY~favv-vDD~~mg--ITHviRG~d~~~nt~-~q~~l 226 (472)
T COG0008 151 AVVRLKIPMAHPGPVFRDLVRGRIVFAPKHPDFVILRYDGYPTYNFAVV-VDDHLMG--ITHVLRGEDHLDNTP-RQIWL 226 (472)
T ss_pred eEEEEeCCCCCCCCccccceeeeEecCccCCcceeecCCCCcccceeee-echhhcC--CceEEechhhccCCH-HHHHH
Confidence 0 0011000111 1111000000000001 1112234566654321 0011233 445555889432211 23444
Q ss_pred HhhccCCCCccEEEEeeeeee-CCcccccccCCccCHHHHH-HhcCchhHHHHHhhc----CCCCccCCCHHHHHH
Q 012397 258 SCAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQIT-ERYHPLALRHFLISA----HYRSPLNYSVLQLDS 327 (464)
Q Consensus 258 ~~a~~~~~~~~~~~~~~~v~~-~G~KmSks~gn~i~~~dll-~~~~~dalR~~ll~~----~~~~~~~f~~~~~~~ 327 (464)
..+++.++|. +.|.+.++. +|+|||||+| .+...+.. ..+.+.+++-++... ++...-.|+.+.+..
T Consensus 227 ~~~lg~~~P~--~~H~~li~~~~g~kLSKr~~-~~~~~~~~~~G~~~~al~~~~allg~~~~~~~~e~f~~~~~~~ 299 (472)
T COG0008 227 YEALGWPPPV--YAHLPLLLNEDGKKLSKRKG-AVSIGEYRVEGWLPPALPNLLALLGRGYPPEAIEIFSLEEGIK 299 (472)
T ss_pred HHHcCCCCCc--EEEeeeeecCCCCeecCccC-ccccchhhhcCCCcHHHHHHHHHhcCCCChhhHHHHHHHHHHh
Confidence 5556655543 478888887 6779999999 67777644 468888888777542 224444566555543
No 87
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=99.60 E-value=2.3e-14 Score=133.41 Aligned_cols=206 Identities=15% Similarity=0.099 Sum_probs=138.7
Q ss_pred CCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 012397 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (464)
Q Consensus 46 ~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~~ 125 (464)
.|+|+|+||+||+|++++...+|| +..|.=++.+.-+| . .+ ....+.+.+.++|++||+.+
T Consensus 7 APsPtG~lHlG~~~~al~~~l~Ar--~~~G~~iLRieDtD---~---~R----------~~~~~~~~I~~dL~wlGl~w- 67 (238)
T cd00807 7 PPEPNGYLHIGHAKAILLNFGYAK--KYGGRCNLRFDDTN---P---EK----------EEEEYVDSIKEDVKWLGIKP- 67 (238)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEecCCC---C---cc----------cchHHHHHHHHHHHHcCCCC-
Confidence 588999999999999999999999 56776666665555 2 12 23457889999999999997
Q ss_pred CCCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCCCCCCCCCCCccccccccCCCcccCCcccCcccccccccccC
Q 012397 126 TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKA 205 (464)
Q Consensus 126 ~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~~g~l~~~~~~~~~~g~~~~~~~~k~~~~d~~~w~~~~~ 205 (464)
|....+|++.+.+++...+|+++|.+|. . +. .|. ++.+
T Consensus 68 D~~~~QS~r~~~Y~~~~~~L~~~g~aY~---------~----~~-----------~~~------------~~~i------ 105 (238)
T cd00807 68 YKVTYASDYFDQLYEYAEQLIKKGKAYV---------H----HR-----------TGD------------KWCI------ 105 (238)
T ss_pred CCceecccCHHHHHHHHHHHHHcCCeec---------C----CC-----------CCC------------CEEE------
Confidence 5667889999999999999999999996 0 00 010 1111
Q ss_pred CCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCccccchHHHHHHhhccCCCCccEEEEeeeeeeCCccccc
Q 012397 206 GEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSK 285 (464)
Q Consensus 206 g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h~~~~~a~~~a~~~~~~~~~~~~~~~v~~~G~KmSk 285 (464)
.|+|+.++... .... .++-.+-|.|++..-. .......+++.++|. + ++.+++..+|+|+||
T Consensus 106 ------------~ptY~lA~vVD-D~~~--gIThVvRG~D~l~~t~-~Q~~l~~aLg~~~P~-~-~~~~hln~~g~kLSK 167 (238)
T cd00807 106 ------------YPTYDFAHPIV-DSIE--GITHSLCTLEFEDRRP-SYYWLCDALRLYRPH-Q-WEFSRLNLTYTVMSK 167 (238)
T ss_pred ------------EeccccceEee-cccc--CCCeEEechhhhcCCH-HHHHHHHHcCCCCCc-e-eEEEEECCCCCCccC
Confidence 13332221000 0112 3556666889443222 234445566665544 2 345677789999999
Q ss_pred ccCC------cc---------CHHHHHH-hcCchhHHHHHhhc-CCCCccCCCHHHHHHHHH
Q 012397 286 SLGN------FF---------TIRQITE-RYHPLALRHFLISA-HYRSPLNYSVLQLDSASD 330 (464)
Q Consensus 286 s~gn------~i---------~~~dll~-~~~~dalR~~ll~~-~~~~~~~f~~~~~~~~~~ 330 (464)
|.+. .+ ++..+.. .+.|+|++-|++.. --..+..|+++.+....+
T Consensus 168 R~~~~~i~~g~~~~wddpr~~~~~~l~~~G~~peal~~~l~~lG~s~~~~~~~~~~l~~~nr 229 (238)
T cd00807 168 RKLLQLVDEGYVDGWDDPRLPTLRGLRRRGVTPEAIRQFILRQGVSKADSTIDWDKLEACVR 229 (238)
T ss_pred cCchhccccCCcccccCcchHHHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHHHHHHHH
Confidence 9853 12 2344433 58899999999986 446889999999876544
No 88
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=99.59 E-value=4.1e-14 Score=145.93 Aligned_cols=257 Identities=17% Similarity=0.060 Sum_probs=155.6
Q ss_pred eCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCC
Q 012397 45 CGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLP 124 (464)
Q Consensus 45 ~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~ 124 (464)
-+|+|+|.|||||||++++...+|| +..|.=++.+.-|| . ......|.+.|.++|++||+.+
T Consensus 34 FaPsPtG~LHiG~ar~al~n~~~Ar--~~~G~~iLRieDTd---~-------------~r~~~e~~~~I~~dL~wLGi~~ 95 (554)
T PRK05347 34 FPPEPNGYLHIGHAKSICLNFGLAQ--DYGGKCNLRFDDTN---P-------------EKEDQEYVDSIKEDVRWLGFDW 95 (554)
T ss_pred eCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEECCCC---C-------------CcCChHHHHHHHHHHHHcCCCC
Confidence 3699999999999999999999999 56777666666655 2 1223458899999999999997
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCC--------------CCCCCCCCCccc----cccccCCC--
Q 012397 125 PTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK--------------SPNYGRLSGQRL----ENNRAGER-- 184 (464)
Q Consensus 125 ~~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~--------------~~~~g~l~~~~~----~~~~~g~~-- 184 (464)
++....+|++.+.+.+...+|+++|.+| +++|... ...|...+..+- +++.+|..
T Consensus 96 d~~~~~qS~r~~~~y~~a~~Li~~G~AY-----~c~cs~eei~~~R~~~~~~g~~~~~R~~s~eenl~~~~~m~~G~~~~ 170 (554)
T PRK05347 96 SGELRYASDYFDQLYEYAVELIKKGKAY-----VDDLSAEEIREYRGTLTEPGKNSPYRDRSVEENLDLFERMRAGEFPE 170 (554)
T ss_pred CCCceeeecCHHHHHHHHHHHHHcCCEe-----eCCCCHHHHHHHhhhhhhcCCCCCccCCCHHHHHHHHHHHHCCCCCC
Confidence 6677788899998888999999999999 5555431 111222222111 12233321
Q ss_pred ---c---ccCCcccCc--ccccccccccCCCCcccC-CCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCccccchHHH
Q 012397 185 ---V---AVDSRKRNP--ADFALWKAAKAGEPSWDS-PWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEI 255 (464)
Q Consensus 185 ---~---~~~~~k~~~--~d~~~w~~~~~g~~~~~~-~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h~~~~~ 255 (464)
+ ..+....++ +|+.+.+....-.+ +.. .| ...|+|+.++.. -....| ++-..-|.|+.. +...+.
T Consensus 171 g~~vlR~Kid~~~~n~~~rD~Vi~R~~~~~H~-r~G~k~-~iyPtYdfA~~v-dD~l~g--ITHvlRg~E~~~-~t~~~~ 244 (554)
T PRK05347 171 GSAVLRAKIDMASPNINMRDPVLYRIRHAHHH-RTGDKW-CIYPMYDFAHCI-SDAIEG--ITHSLCTLEFED-HRPLYD 244 (554)
T ss_pred CcEEEEEEeeccCCCCCCCCCEEEEecCCCCC-ccCCce-eeecCcCcccee-eccccC--CceEEecccccc-ChHHHH
Confidence 1 000001111 35544443210000 000 11 125666544311 011122 333344566321 122334
Q ss_pred HHHhhccCCCCccEEEEeeeeeeCCcccccccCC-------c--------cCHHHHHH-hcCchhHHHHHhhcC-CCCcc
Q 012397 256 AQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGN-------F--------FTIRQITE-RYHPLALRHFLISAH-YRSPL 318 (464)
Q Consensus 256 a~~~a~~~~~~~~~~~~~~~v~~~G~KmSks~gn-------~--------i~~~dll~-~~~~dalR~~ll~~~-~~~~~ 318 (464)
.+..+++....+.. .+.+++.++|.|||||++. + .++..+.+ .|.|+|||-|++... -..+.
T Consensus 245 ~i~~alg~~~~P~~-~~F~rln~~~~~LSKRkl~~lV~~g~v~GWDDPRl~Ti~~lrrrG~~PeAi~nf~~~lG~s~~~~ 323 (554)
T PRK05347 245 WVLDNLPIPPHPRQ-YEFSRLNLTYTVMSKRKLKQLVEEKHVDGWDDPRMPTISGLRRRGYTPESIREFCERIGVTKQDS 323 (554)
T ss_pred HHHHHcCCCCCCce-EEEEEECCCCCccccccchhccccCcccCccCCcchhHHHHHHCCCCHHHHHHHHHHhCCCCCCC
Confidence 44556654322333 3457888899999999965 2 26777776 599999999999873 35777
Q ss_pred CCCHHHHHHHHHH
Q 012397 319 NYSVLQLDSASDA 331 (464)
Q Consensus 319 ~f~~~~~~~~~~~ 331 (464)
.++++.+.+..+.
T Consensus 324 ~i~~~~L~~~nRk 336 (554)
T PRK05347 324 VIDMSMLESCIRE 336 (554)
T ss_pred eecHHHHHHHHHH
Confidence 9999999877653
No 89
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=99.58 E-value=3.3e-14 Score=139.98 Aligned_cols=225 Identities=19% Similarity=0.201 Sum_probs=130.1
Q ss_pred CCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 012397 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (464)
Q Consensus 46 ~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~~ 125 (464)
+|+|+|+|||||+|++++...+|| +..|.=++.+--+|. ......+.+.|.++|++||+.++
T Consensus 7 APsPtG~lHiG~~r~al~n~~~Ar--~~~G~~iLRieDtD~----------------~R~~~~~~~~i~~~L~wlGl~~D 68 (314)
T PF00749_consen 7 APSPTGYLHIGHARTALLNYLFAR--KYGGKFILRIEDTDP----------------ERCRPEFYDAILEDLRWLGLEWD 68 (314)
T ss_dssp ---SSSS-BHHHHHHHHHHHHHHH--HTTSEEEEEEETSST----------------TTCHHHHHHHHHHHHHHHT---S
T ss_pred CCCCCCCcccchhHHHHHHHHHHh--ccCceEEEecccccc----------------ccchhhHHHHHHhheeEEEEecC
Confidence 488999999999999999999999 778887777776662 11234577889999999999975
Q ss_pred CCCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCC-------------CCC-------CCCCCCccccc-cccCCC
Q 012397 126 TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK-------------SPN-------YGRLSGQRLEN-NRAGER 184 (464)
Q Consensus 126 ~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~-------------~~~-------~g~l~~~~~~~-~~~g~~ 184 (464)
.....+|++.+.+++..++|+++|.+| .|||..+ |+. |-.+...+... ...|..
T Consensus 69 ~~~~~QS~r~~~Y~~~~~~L~~~g~aY-----~C~Csr~~l~~~r~~~~~~~~~~~~~y~~~c~~~~~~~~~~~~~~~~~ 143 (314)
T PF00749_consen 69 YGPYYQSDRLEIYQEAAEKLIDKGKAY-----PCFCSREELKAAREAQEGAGCPHRPRYPGTCRELTEEEMRAGLAKGGP 143 (314)
T ss_dssp TCEEEGGGGHHHHHHHHHHHHHTTSEE-----EEESEHHHHHHHHHHHHHTTSTTTTSBHHHHHCHHHHHHHHHHHTTTS
T ss_pred CeEEeHHHHHHHHHHHHHHHhhcCCCc-----cccCCHHHHHHHHHHhhccCCCccccchhhhhhhhHHHHHhhhccCCc
Confidence 567788999999999999999999999 6676541 111 11111101100 001110
Q ss_pred ----cccCCc----------------ccCcccccccccccCCCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecc
Q 012397 185 ----VAVDSR----------------KRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGI 244 (464)
Q Consensus 185 ----~~~~~~----------------k~~~~d~~~w~~~~~g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~ 244 (464)
+..+.. .....|+.+++ .++.|+|+.++... ....+ ++-.+-|.
T Consensus 144 ~~iRlk~~~~~~~~~~D~v~g~i~~~~~~~~D~vi~r-------------~dg~ptY~fA~vVD-D~~~g--ITHViRG~ 207 (314)
T PF00749_consen 144 AVIRLKVPMESPIAFRDLVRGRIIFDPSDLGDFVIRR-------------SDGYPTYHFAVVVD-DHLMG--ITHVIRGE 207 (314)
T ss_dssp EEEEE-SSSTCCEEEEETTTEEEEEEGGGSBTEEEES-------------TTSEB-HHHHHHHH-HHHTT---SEEEEEG
T ss_pred eeeeeecccccccccccCcceeeeeccccCCchhccc-------------cccCcccccceeec-ccccc--cCeEEEcc
Confidence 000000 00001222222 35678887765321 12233 56666788
Q ss_pred cCccccchHHHHHHhhccCCCCccEEEEeeeeee-CCcccccccCCcc-CHHHHHH-hcCchhHHHHHhhc
Q 012397 245 DLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFF-TIRQITE-RYHPLALRHFLISA 312 (464)
Q Consensus 245 D~~~~h~~~~~a~~~a~~~~~~~~~~~~~~~v~~-~G~KmSks~gn~i-~~~dll~-~~~~dalR~~ll~~ 312 (464)
|++..-. ....+..+++..+|. +.|...++. +|+|+|||++... ...++.+ .+.++++--++...
T Consensus 208 D~l~~t~-~Q~~L~~~Lg~~~P~--~~H~pl~l~~~g~kLSKR~~~~~i~~~~~r~~g~~~~~~l~~L~~l 275 (314)
T PF00749_consen 208 DLLSSTP-RQILLYEALGWPPPP--YAHLPLILNEDGKKLSKRKGAKSIELGDYREWGDPPEATLNYLARL 275 (314)
T ss_dssp GGTTCHH-HHHHHHHHCTSSS-E--EEEEEEEEETTSSBSSTTCSHHBHHHHHHHHTT-THHHHHHHHHHT
T ss_pred ccccccH-HHHHHHHHhCCCCcc--eEeeeeeecCCCcEechhhccccccccccccCCCCHHHHHHHHHHh
Confidence 9443221 334445566655433 466555444 8999999998842 2555544 46777777676654
No 90
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=99.58 E-value=6.6e-14 Score=145.45 Aligned_cols=256 Identities=14% Similarity=0.069 Sum_probs=152.8
Q ss_pred CCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 012397 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (464)
Q Consensus 46 ~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~~ 125 (464)
+|+|+|+|||||||++++...+|| ...|.=++.+.-|| . .....+|.+.|.++|++||+.++
T Consensus 58 APsPtGyLHIGharaAllN~l~Ar--~~gG~~iLRiEDTD---p-------------~R~~~e~~d~IleDL~WLGl~wD 119 (601)
T PTZ00402 58 PPEASGFLHIGHAKAALINSMLAD--KYKGKLVFRFDDTN---P-------------SKEKEHFEQAILDDLATLGVSWD 119 (601)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEEcCCC---C-------------cccCHHHHHHHHHHHHHCCCCCC
Confidence 599999999999999999999999 66776666665555 2 22234588999999999999974
Q ss_pred CCCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCC----------CCCCCCCCCcc----ccccccCC-----Ccc
Q 012397 126 TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK----------SPNYGRLSGQR----LENNRAGE-----RVA 186 (464)
Q Consensus 126 ~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~----------~~~~g~l~~~~----~~~~~~g~-----~~~ 186 (464)
.....+|++.+.+.+...+|+++|++| +++|..+ -..|..++..+ .+.+..|. .+.
T Consensus 120 e~~~~QSdr~d~y~e~a~~Li~~G~AY-----~c~cs~eei~~~r~~g~p~~~R~~s~ee~l~~~~~m~~g~~~~~~~~l 194 (601)
T PTZ00402 120 VGPTYSSDYMDLMYEKAEELIKKGLAY-----CDKTPREEMQKCRFDGVPTKYRDISVEETKRLWNEMKKGSAEGQETCL 194 (601)
T ss_pred CceeeccccHHHHHHHHHHHHHcCCEE-----EecCCHHHHHHHHhCCCCCCCCCCCHHHHHHHHHhccccccCCCceEE
Confidence 446788999999999999999999999 4444321 11232222111 01111111 000
Q ss_pred ---cC--CcccCcccccccccccCCCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCccccchHHHHHHhhc
Q 012397 187 ---VD--SRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAA 261 (464)
Q Consensus 187 ---~~--~~k~~~~d~~~w~~~~~g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h~~~~~a~~~a~ 261 (464)
.+ ....+-.|+.+++....-.+ +..+--.+.|+|+.++.. -.... .++-.+-|.|+... ...+..+..++
T Consensus 195 R~kid~~~~n~~~rD~Vl~R~~~~~h~-rtGdk~dgyPtYdfA~vV-DD~l~--gITHvlRg~E~l~~-tp~q~~L~~aL 269 (601)
T PTZ00402 195 RAKISVDNENKAMRDPVIYRVNLTPHA-RQGTKYKAYPTYDFCCPI-IDSVE--GVTHALRTNEYHDR-NDQYYWFCDAL 269 (601)
T ss_pred EEecccCCCCCCccCCEEEEEcCCccc-ccCCCCceeeccCcceee-Ecccc--CCceEeechhhhhC-cHHHHHHHHHh
Confidence 00 00011135555442110000 001111345666544310 01112 24455557784322 22334445556
Q ss_pred cCCCCccEEEEeeeeeeCCcccccccCCc---------------cCHHHHH-HhcCchhHHHHHhhc-CCCCccCCCHHH
Q 012397 262 CQDSNVSYWMHNGHVTNNNEKMSKSLGNF---------------FTIRQIT-ERYHPLALRHFLISA-HYRSPLNYSVLQ 324 (464)
Q Consensus 262 ~~~~~~~~~~~~~~v~~~G~KmSks~gn~---------------i~~~dll-~~~~~dalR~~ll~~-~~~~~~~f~~~~ 324 (464)
+..+|. +.|.+.+..+|.|||||++.- .++.-|. ..+.++++|=|+... .-..+..|+++.
T Consensus 270 g~~~P~--~~h~~rLn~~g~kLSKRkl~~lv~~g~v~GWdDprlpTi~glrRrG~~peai~~f~~~~Gvsk~~~~~d~~~ 347 (601)
T PTZ00402 270 GIRKPI--VEDFSRLNMEYSVMSKRKLTQLVDTHVVDGWDDPRFPTVRALVRRGLKMEALRQFVQEQGMSKTVNFMEWSK 347 (601)
T ss_pred CCCCce--EEEEeeEcCCCCcccccCChhhhhcCcccccCCCccHhHHHHHHcCCCHHHHHHHHHHhCCCCCCcccCHHH
Confidence 554433 467777777999999998862 1222222 368999999999887 446788999999
Q ss_pred HHHHHHH
Q 012397 325 LDSASDA 331 (464)
Q Consensus 325 ~~~~~~~ 331 (464)
+....+.
T Consensus 348 L~~~nr~ 354 (601)
T PTZ00402 348 LWYFNTQ 354 (601)
T ss_pred HHHHHHH
Confidence 9876553
No 91
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=99.57 E-value=3.3e-14 Score=147.77 Aligned_cols=254 Identities=20% Similarity=0.217 Sum_probs=150.7
Q ss_pred CCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 012397 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (464)
Q Consensus 46 ~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~~ 125 (464)
+|+|||+|||||||++++.+.+|| ...| .++.-+||.+.+ +. ...|.+.|.++|++||+.+
T Consensus 99 aPsPtG~LHiGharaalln~~~Ar--~~~G---~~iLRidDTDp~---R~----------~~e~~~~I~edL~wLGi~~- 159 (560)
T TIGR00463 99 APNPSGPLHIGHARAAILNQYFAK--KYKG---KLIIRFDDTDPR---RV----------KPEAYDMILEDLDWLGVKG- 159 (560)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHH--hcCC---EEEEEeCcCCcc---cc----------cHHHHHHHHHHHHHcCCCC-
Confidence 699999999999999999999998 4445 455555555431 21 2348899999999999995
Q ss_pred CCCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCC----------CCCCCCCCCcc-c---cccccCCC-------
Q 012397 126 TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK----------SPNYGRLSGQR-L---ENNRAGER------- 184 (464)
Q Consensus 126 ~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~----------~~~~g~l~~~~-~---~~~~~g~~------- 184 (464)
+..+++|+|.+.+.++..+|+++|.+| +++|... ...|..++..+ + +++.+|..
T Consensus 160 d~~~~qSd~~~~y~~~a~~Li~~G~AY-----~C~cs~eei~~~r~~g~~~~cR~~s~eenl~~fe~m~~g~~~~~~~~l 234 (560)
T TIGR00463 160 DEVVYQSDRIEEYYDYCRKLIEMGKAY-----VCDCPPEEFRELRNDGVACACRDRSVEENLEIWEEMLNGTEEGGKVVV 234 (560)
T ss_pred CccccccccHHHHHHHHHHHHHcCCce-----eecCCHHHHHHHHhCCCCCCccCCCHHHHHHHHHHHhcccccCCCeEE
Confidence 788999999999999999999999999 4444321 11233333211 1 12222211
Q ss_pred -cccCCcccC--cccccccccccCCCCcccC-CCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCccccchHHHHHHhh
Q 012397 185 -VAVDSRKRN--PADFALWKAAKAGEPSWDS-PWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCA 260 (464)
Q Consensus 185 -~~~~~~k~~--~~d~~~w~~~~~g~~~~~~-~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h~~~~~a~~~a 260 (464)
+..+....+ -+|+.+++....-.+ +.. .| ...|+|+.++... .... .++-.+-|.|+...-. .......+
T Consensus 235 R~K~d~~~~n~~~rD~V~~R~~~~~h~-~~Gd~~-~~~PtYdfA~~VD-D~l~--gITHviRg~E~~~nT~-rq~yl~~~ 308 (560)
T TIGR00463 235 RAKTDYKHKNPAIRDWVIFRINKTPHP-RTGDKY-KVYPTMDFSVPID-DHLL--GVTHVLRGKDHIDNER-KQQYIYMY 308 (560)
T ss_pred EEECCCcCCCccccCcEEEEecCCCcc-ccCCEE-EEEeccccceEee-cccC--CCCeEEechhhhcCCH-HHHHHHHH
Confidence 111110011 145555543211000 000 11 1356665443110 1112 2445555778433111 22333344
Q ss_pred ccCCCCccEEEEeeeeee-CCcccccccC-------Cc--------cCHHHHHH-hcCchhHHHHHhhc-CCCCccCCCH
Q 012397 261 ACQDSNVSYWMHNGHVTN-NNEKMSKSLG-------NF--------FTIRQITE-RYHPLALRHFLISA-HYRSPLNYSV 322 (464)
Q Consensus 261 ~~~~~~~~~~~~~~~v~~-~G~KmSks~g-------n~--------i~~~dll~-~~~~dalR~~ll~~-~~~~~~~f~~ 322 (464)
++..+ +. +.|.+++.+ +|.|+|||+. .+ .++..+.. .+.|+|||-|++.. .-..+..++|
T Consensus 309 lg~~~-P~-~~h~~~l~~~~~~kLskk~k~~~l~~g~~~gWdDPr~~ti~~lrrrG~~peAi~~f~~~~G~s~~~~~i~~ 386 (560)
T TIGR00463 309 FGWEL-PE-FIHWGRLKINDVRTLSTSSKLKGIVRGDYSGWDDPRLPTLRAVRRRGITPEAIRNFMLSIGVKRNDVNLSW 386 (560)
T ss_pred cCCCC-Ce-EEEEcceecCCCcEecchhhhhhhhccCccCcCCccHHHHHHHHHCCCCHHHHHHHHHHhCCCCCCceeeH
Confidence 44443 33 478899988 5569998762 11 24445444 59999999999987 4467889999
Q ss_pred HHHHHHHHH
Q 012397 323 LQLDSASDA 331 (464)
Q Consensus 323 ~~~~~~~~~ 331 (464)
+.+.+..+.
T Consensus 387 ~~l~~~nr~ 395 (560)
T TIGR00463 387 KNIYAFNKK 395 (560)
T ss_pred HHHHHHHHH
Confidence 998876553
No 92
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=99.57 E-value=5.8e-14 Score=150.89 Aligned_cols=254 Identities=17% Similarity=0.031 Sum_probs=158.3
Q ss_pred CCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 012397 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (464)
Q Consensus 46 ~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~~ 125 (464)
+|+|+|.|||||||++++...+|| +..|.=++.+.-|| . ..-...|.+.|.++|++||+.++
T Consensus 37 aPsPtG~lHiGhar~alln~~~A~--~~~G~~~LR~eDTd---~-------------~r~~~e~~~~I~~dl~wLG~~wd 98 (771)
T PRK14703 37 PPEPNGYLHIGHAKSILLNFGIAR--DYGGRCHLRMDDTN---P-------------ETEDTEYVEAIKDDVRWLGFDWG 98 (771)
T ss_pred CcCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEeCCCC---C-------------CcCChHHHHHHHHHHHHcCCCCC
Confidence 599999999999999999999999 66776666665555 2 11234588999999999999975
Q ss_pred CCCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCC--------------CCCCCCCCCccc----cccccCC----
Q 012397 126 TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK--------------SPNYGRLSGQRL----ENNRAGE---- 183 (464)
Q Consensus 126 ~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~--------------~~~~g~l~~~~~----~~~~~g~---- 183 (464)
.....+|++.+.+.+...+|+++|.+| +|+|... .+.|...+..+- +.+..|.
T Consensus 99 ~~~~~qS~~~~~y~~~a~~Li~~G~aY-----~c~cs~eei~~~r~~~~~~g~~~~~R~~s~ee~l~~~~~m~~G~~~~g 173 (771)
T PRK14703 99 EHLYYASDYFERMYAYAEQLIKMGLAY-----VDSVSEEEIRELRGTVTEPGTPSPYRDRSVEENLDLFRRMRAGEFPDG 173 (771)
T ss_pred CCceEeecCHHHHHHHHHHHHHcCCcc-----cCcCCHHHHHHHHhhhhhcCCCCCCCCCCHHHHHHHHHHHhCCCCcCC
Confidence 556788999999999999999999999 4555431 112222222111 1222332
Q ss_pred -Cc---ccCCcccC--cccccccccccCCCCcccCCCCC---CCCchhhHHHHHHHhhcCCCeeEEEecccCccccchHH
Q 012397 184 -RV---AVDSRKRN--PADFALWKAAKAGEPSWDSPWGP---GRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENE 254 (464)
Q Consensus 184 -~~---~~~~~k~~--~~d~~~w~~~~~g~~~~~~~wg~---~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h~~~~ 254 (464)
.+ ..+....+ -+|+.+++....-.+ ..|. ..|.|+.++.. -.... .+.-..-|.|+... ...+
T Consensus 174 ~~vlR~Kid~~~~n~~~rD~v~~R~~~~~H~----~~Gd~~~i~PtYdfa~~v-dD~l~--gITHvlRg~E~~~~-~~~~ 245 (771)
T PRK14703 174 AHVLRAKIDMSSPNMKLRDPLLYRIRHAHHY----RTGDEWCIYPMYDFAHPL-EDAIE--GVTHSICTLEFENN-RAIY 245 (771)
T ss_pred CeEEEEEeeccCCcccCCCCEEEEEcCCCCC----CcCCCCCcCCCcccccee-ecccc--CCcEEEecHhhhhc-cHHH
Confidence 11 00110111 146666654211011 1333 25776654310 01112 23444456773322 1233
Q ss_pred HHHHhhccCCCC-ccEEEEeeeeeeCCccccccc-------CCcc--------CHHHHHH-hcCchhHHHHHhhc-CCCC
Q 012397 255 IAQSCAACQDSN-VSYWMHNGHVTNNNEKMSKSL-------GNFF--------TIRQITE-RYHPLALRHFLISA-HYRS 316 (464)
Q Consensus 255 ~a~~~a~~~~~~-~~~~~~~~~v~~~G~KmSks~-------gn~i--------~~~dll~-~~~~dalR~~ll~~-~~~~ 316 (464)
..+..+++..++ +.+ .+.+++.+.|.|||||+ |-+- ++..+.+ .|.|+|||-|++.. --..
T Consensus 246 ~~l~~~l~~~~~~P~~-~~f~rl~l~~~~lSKRkl~~lV~~g~v~GWDDPRlpti~~lrrrG~~peAi~~f~~~lG~s~~ 324 (771)
T PRK14703 246 DWVLDHLGPWPPRPRQ-YEFARLALGYTVMSKRKLRELVEEGYVSGWDDPRMPTIAGQRRRGVTPEAIRDFADQIGVAKT 324 (771)
T ss_pred HHHHHHhCCCCCCcce-eEEEEeccCCCcccccCchhccccCcccCCCCCchhhHHHHHHCCCCHHHHHHHHHHhCCCcc
Confidence 444556655433 433 45688989999999998 4432 5666665 59999999999987 3457
Q ss_pred ccCCCHHHHHHHHHH
Q 012397 317 PLNYSVLQLDSASDA 331 (464)
Q Consensus 317 ~~~f~~~~~~~~~~~ 331 (464)
+..++++.+.+..+.
T Consensus 325 ~~~i~~~~L~~~~R~ 339 (771)
T PRK14703 325 NSTVDIGVLEFAIRD 339 (771)
T ss_pred CceecHHHHHHHHHH
Confidence 778999998876543
No 93
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.56 E-value=8.9e-14 Score=130.56 Aligned_cols=189 Identities=18% Similarity=0.180 Sum_probs=123.9
Q ss_pred CCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 012397 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (464)
Q Consensus 46 ~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~~ 125 (464)
.|+|+|.|||||+++++....+|| +..|.=++.+.-|| . ..-...+.+.+.++|++||+.++
T Consensus 7 APsPtG~LHlG~~~~al~n~l~ar--~~~G~~ilRieDtd---~-------------~r~~~~~~~~i~~dL~wlGl~~d 68 (239)
T cd00808 7 APSPTGFLHIGGARTALFNYLFAR--KHGGKFILRIEDTD---Q-------------ERSVPEAEEAILEALKWLGLDWD 68 (239)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHH--HcCCeEEEEECcCC---C-------------CCCchHHHHHHHHHHHHcCCCCC
Confidence 588999999999999999999999 45664444454444 1 11223477889999999999974
Q ss_pred C--------CCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCCCCCCCCCCCccccccccCCCcccCCcccCcccc
Q 012397 126 T--------YQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADF 197 (464)
Q Consensus 126 ~--------~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~~g~l~~~~~~~~~~g~~~~~~~~k~~~~d~ 197 (464)
. ....+|++.+.+.+...+|+++| +
T Consensus 69 ~~~~~~g~~~~~~QS~r~~~y~~~~~~L~~~g-------d---------------------------------------- 101 (239)
T cd00808 69 EGPDVGGPYGPYRQSERLEIYRKYAEKLLEKG-------D---------------------------------------- 101 (239)
T ss_pred cCCccCCCCCCEeeeCCHHHHHHHHHHHHHcC-------C----------------------------------------
Confidence 3 15678899999999999999988 0
Q ss_pred cccccccCCCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCccccchHHHHHHhhccCCCCccEEEEeeeee
Q 012397 198 ALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT 277 (464)
Q Consensus 198 ~~w~~~~~g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h~~~~~a~~~a~~~~~~~~~~~~~~~v~ 277 (464)
+.|+|+.+.... .... .++..+-|+|+.. |.........+++.++| . +.|...++
T Consensus 102 -------------------g~ptY~~a~~vD-D~~~--~ithViRG~D~~~-~t~~q~~l~~aLg~~~p-~-~~h~pll~ 156 (239)
T cd00808 102 -------------------GFPTYHLANVVD-DHLM--GITHVIRGEEHLS-STPKQILLYEALGWEPP-K-FAHLPLIL 156 (239)
T ss_pred -------------------CCcccccHHHHh-HHhc--CCCEEEEChhhhh-ChHHHHHHHHHcCCCCC-c-eEeecccc
Confidence 111222111100 0012 3566677889331 11233444556665443 3 35666654
Q ss_pred -eCCcccccccCCccCHHHHHH-hcCchhHHHHHhhcCCCC---ccCCCHHHH
Q 012397 278 -NNNEKMSKSLGNFFTIRQITE-RYHPLALRHFLISAHYRS---PLNYSVLQL 325 (464)
Q Consensus 278 -~~G~KmSks~gn~i~~~dll~-~~~~dalR~~ll~~~~~~---~~~f~~~~~ 325 (464)
.+|.|||||.|+ .++..+.+ .+.+++++.|++...... ..-++.+++
T Consensus 157 ~~~g~KLSKR~~~-~~l~~lr~~G~~p~ai~~~l~~lG~~~~~~~~~~~~~~l 208 (239)
T cd00808 157 NPDGKKLSKRKGD-TSISDYREEGYLPEALLNYLALLGWSPPDGEEFFTLEEL 208 (239)
T ss_pred CCCCCcccCCCCC-ccHHHHHHCCCCHHHHHHHHHHcCCCCCCCCCcCCHHHH
Confidence 489999999999 68888766 589999999998643321 234555544
No 94
>PLN02907 glutamate-tRNA ligase
Probab=99.55 E-value=1.2e-13 Score=148.88 Aligned_cols=253 Identities=15% Similarity=0.103 Sum_probs=154.8
Q ss_pred CCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 012397 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (464)
Q Consensus 46 ~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~~ 125 (464)
+|+|+|.|||||||++++...+|| +..|.=++.+.-|| . ..-..+|.+.|.++|++||+.+
T Consensus 219 aPsPtG~LHiG~ar~al~n~~~Ar--~~~G~~iLR~eDTd---p-------------~r~~~e~~~~I~~dl~wLG~~~- 279 (722)
T PLN02907 219 PPEPSGYLHIGHAKAALLNQYFAR--RYKGKLIVRFDDTN---P-------------SKESDEFVENILKDIETLGIKY- 279 (722)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEecCCC---C-------------CcCChHHHHHHHHHHHHcCCCC-
Confidence 699999999999999999999999 66787777666665 2 1123458899999999999996
Q ss_pred CCCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCC----------CCCCCCCCCcc----ccccccCCC-------
Q 012397 126 TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK----------SPNYGRLSGQR----LENNRAGER------- 184 (464)
Q Consensus 126 ~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~----------~~~~g~l~~~~----~~~~~~g~~------- 184 (464)
|....+|++.+.+.+...+|+++|.+|.. .|... -..|..++..+ .+++..|..
T Consensus 280 d~~~~qS~r~~~y~~~a~~Li~~G~aY~~-----~~~~~~~~~~~~~~~~~~~R~~~~ee~~~~~~~m~~g~~~~~~~~l 354 (722)
T PLN02907 280 DAVTYTSDYFPQLMEMAEKLIKEGKAYVD-----DTPREQMRKERMDGIESKCRNNSVEENLRLWKEMIAGSERGLQCCV 354 (722)
T ss_pred CCcccccccHHHHHHHHHHHHHcCCeeec-----CCCHHHHHHHHhcCCCCCccCCCHHHHHHHHHHHhcccccCCCeEE
Confidence 67788999999999999999999999952 22210 01122222211 122322221
Q ss_pred -cccCCcccC--cccccccccccCCCC-cc-cCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCccccchHHHHHHh
Q 012397 185 -VAVDSRKRN--PADFALWKAAKAGEP-SW-DSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSC 259 (464)
Q Consensus 185 -~~~~~~k~~--~~d~~~w~~~~~g~~-~~-~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h~~~~~a~~~ 259 (464)
...+....+ -+|+.+.+.. +.+ .+ -..| ...|.|+.++.. -.... .++-.+-|.|+... ...+..+..
T Consensus 355 R~k~d~~~~n~~~~D~v~~R~~--~~~h~~~gd~~-~~~PtY~fa~~v-dD~~~--gIThvlRg~e~~~~-t~~q~~l~~ 427 (722)
T PLN02907 355 RGKLDMQDPNKSLRDPVYYRCN--PTPHHRIGSKY-KVYPTYDFACPF-VDALE--GVTHALRSSEYHDR-NAQYYRILE 427 (722)
T ss_pred EEEcccCCCCCCcccCEEEEec--CCcccccCCcc-ceeeccCCceEE-EcccC--CCceEeecHhhhhC-hHHHHHHHH
Confidence 111100011 1354444331 111 00 0112 345666544310 01112 24445557783321 112344455
Q ss_pred hccCCCCccEEEEeeeeeeCCccccccc-------CCc--------cCHHHHHH-hcCchhHHHHHhhc-CCCCccCCCH
Q 012397 260 AACQDSNVSYWMHNGHVTNNNEKMSKSL-------GNF--------FTIRQITE-RYHPLALRHFLISA-HYRSPLNYSV 322 (464)
Q Consensus 260 a~~~~~~~~~~~~~~~v~~~G~KmSks~-------gn~--------i~~~dll~-~~~~dalR~~ll~~-~~~~~~~f~~ 322 (464)
+++.+.| .+ .+.+++.++|.|||||+ |-+ .++..+.+ .+.+++||=|+... .-..+..|++
T Consensus 428 ~lg~~~p-~~-~~f~~l~~~~~~lSKR~l~~~v~~g~v~Gwddpr~pt~~~~rrrG~~~eai~~f~~~~g~s~~~~~~~~ 505 (722)
T PLN02907 428 DMGLRKV-HI-WEFSRLNFVYTLLSKRKLQWFVDNGKVEGWDDPRFPTVQGIVRRGLKIEALKQFILSQGASKNLNLMEW 505 (722)
T ss_pred HcCCCCC-ee-EEEEEEcCCCccccccchHhHhhcCcccCCCCCCcccHHHHHHcCCCHHHHHHHHHHhCCCcCCccccH
Confidence 6665544 33 45678888999999998 432 24566654 49999999999987 4467889999
Q ss_pred HHHHHHHHH
Q 012397 323 LQLDSASDA 331 (464)
Q Consensus 323 ~~~~~~~~~ 331 (464)
+.+....+.
T Consensus 506 ~~l~~~nr~ 514 (722)
T PLN02907 506 DKLWTINKK 514 (722)
T ss_pred HHHHHHHHH
Confidence 999876553
No 95
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=99.55 E-value=9.4e-14 Score=143.08 Aligned_cols=255 Identities=15% Similarity=0.047 Sum_probs=147.5
Q ss_pred CCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 012397 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (464)
Q Consensus 46 ~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~~ 125 (464)
+|+|+|.|||||||++++...+|| +..|.=++.+.-||- ..-..+|.+.|.++|++||+.++
T Consensus 6 aPsPtG~LHiG~ar~al~n~~~A~--~~~G~~iLRieDTd~----------------~r~~~e~~~~I~~dL~wLG~~~d 67 (522)
T TIGR00440 6 PPEPNGYLHIGHAKSICLNFGYAK--YYNGTCNLRFDDTNP----------------VKEDPEYVESIKRDVEWLGFKWE 67 (522)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEEcCCCc----------------ccCChHHHHHHHHHHHHcCCCCC
Confidence 589999999999999999999999 667777777666652 11224588999999999999975
Q ss_pred CCCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCC--------------CCCCCCCCCccc----cccccCCC---
Q 012397 126 TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK--------------SPNYGRLSGQRL----ENNRAGER--- 184 (464)
Q Consensus 126 ~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~--------------~~~~g~l~~~~~----~~~~~g~~--- 184 (464)
+....+|++.+.+.+...+|+++|.+| +++|... ...|..++..+. +++.+|..
T Consensus 68 ~~~~~qS~~~~~~~~~a~~Li~~G~AY-----~c~cs~eel~~~R~~~~~~g~~~~~R~~s~ee~l~~f~~m~~G~~~~g 142 (522)
T TIGR00440 68 GKIRYSSDYFDELYRYAEELIKKGLAY-----VDELTPEEIREYRGTLTDPGKNSPYRDRSIEENLALFEKMRDGKFKEG 142 (522)
T ss_pred CCceEccccHHHHHHHHHHHHHcCCEE-----eecCCHHHHHHhhhhcccCCCCCcccCCCHHHHHHHHHHHhcCcccCC
Confidence 666788899999999999999999999 4555431 012222322211 12333321
Q ss_pred --c---ccCCcccCc--ccccccccccCCCCcccC-CCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCccccchHHHH
Q 012397 185 --V---AVDSRKRNP--ADFALWKAAKAGEPSWDS-PWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIA 256 (464)
Q Consensus 185 --~---~~~~~k~~~--~d~~~w~~~~~g~~~~~~-~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h~~~~~a 256 (464)
+ ..+....++ +|+...+-.....+ +.. .| ...|.|+.++.. -....| ++-..-|.|+..-- ..+-+
T Consensus 143 ~~vlR~Kid~~~~n~~~rD~V~~Ri~~~~h~-~~gdk~-~iyPtYdfa~~v-dD~l~g--ITHviRg~E~~~nt-~~Y~~ 216 (522)
T TIGR00440 143 KAILRAKIDMASPFPVMRDPVAYRIKFAPHH-QTGTKW-CIYPMYDFTHCI-SDAMEN--ITHSLCTLEFQDNR-RLYDW 216 (522)
T ss_pred CeEEEEeCcCCCCCceEeeeeEEEEecCCCC-CCCCCe-eEEeCcCCceee-hhccCC--CceEeecHhhhhcH-HHHHH
Confidence 1 011000011 23333222111000 000 11 125666544310 011122 33444466732111 11222
Q ss_pred HHhhccCCCCccEEEEeeeeeeCCcccccccCCc---------------cCHHHHHH-hcCchhHHHHHhhcCCCC-ccC
Q 012397 257 QSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNF---------------FTIRQITE-RYHPLALRHFLISAHYRS-PLN 319 (464)
Q Consensus 257 ~~~a~~~~~~~~~~~~~~~v~~~G~KmSks~gn~---------------i~~~dll~-~~~~dalR~~ll~~~~~~-~~~ 319 (464)
....++....+.. .+.+++..+|.|||||++.. .++..+.+ .|.|+|||-|++...+.+ +..
T Consensus 217 ~~~~l~~~~~P~~-~~F~rln~~~~kLSKRk~~~~V~~g~v~GWdDPRl~Ti~~lrrrG~~PeAi~nfl~~lG~s~~~~~ 295 (522)
T TIGR00440 217 VLDNIHIFPRPAQ-YEFSRLNLEGTVLSKRKLAQLVDDKFVRGWDDPRMPTISGLRRRGYTPASIREFCNRIGVTKQDNN 295 (522)
T ss_pred HHHhcCccCCCce-EEEEEECCCCCCcccccchhccccCcccCCCCCccccHHHHHHCCCCHHHHHHHHHHhCCCCCCCc
Confidence 2222333212322 34567888999999999874 37788877 599999999999875543 334
Q ss_pred CCHHHHHHHHH
Q 012397 320 YSVLQLDSASD 330 (464)
Q Consensus 320 f~~~~~~~~~~ 330 (464)
.++..+.+..+
T Consensus 296 ~e~~~l~~~~r 306 (522)
T TIGR00440 296 IEVVRLESCIR 306 (522)
T ss_pred eehhhHHHHHH
Confidence 56666665543
No 96
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=99.53 E-value=2.1e-13 Score=140.60 Aligned_cols=254 Identities=18% Similarity=0.158 Sum_probs=151.0
Q ss_pred CcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 012397 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDM 117 (464)
Q Consensus 38 ~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l 117 (464)
|+++.=+ +|+|+|+|||||||++++...+|| +..|.=++.+.-|| . ......|.+.|.++|
T Consensus 50 gkv~tRF-aPsPtG~LHiGharaalln~~~Ar--~~gG~~iLRiEDTD---p-------------~r~~~e~~~~I~~dL 110 (574)
T PTZ00437 50 GKPYFRF-PPEPNGFLHIGHAKSMNLNFGSAR--AHGGKCYLRYDDTN---P-------------ETEEQVYIDAIMEMV 110 (574)
T ss_pred CcEEEEe-CCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEECCCC---c-------------cccChHHHHHHHHHH
Confidence 4544333 599999999999999999999999 56777666666665 1 223346889999999
Q ss_pred HhcCCCCCCCCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCC----------CCCCCCCCCcc----ccccccC-
Q 012397 118 ADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK----------SPNYGRLSGQR----LENNRAG- 182 (464)
Q Consensus 118 ~~lgi~~~~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~----------~~~~g~l~~~~----~~~~~~g- 182 (464)
++||+.+ +....+|+|.+.+.+...+|+++|.+| +++|..+ ...|...+..+ .+++.+|
T Consensus 111 ~wLGi~~-D~~~~qS~y~~~~ye~A~~Li~~G~AY-----~C~cs~eei~~~R~~~~~~~~R~~~~eenL~lfe~M~~g~ 184 (574)
T PTZ00437 111 KWMGWKP-DWVTFSSDYFDQLHEFAVQLIKDGKAY-----VDHSTPDELKQQREQREDSPWRNRSVEENLLLFEHMRQGR 184 (574)
T ss_pred HHcCCCC-CCCCcCchhHHHHHHHHHHHHHcCCEE-----EcCCCHHHHHHHhhcccCCccccCCHHHHHHHHHHHhhcc
Confidence 9999996 666778899998788889999999999 5666542 01122222111 1122222
Q ss_pred ----CCcc---cCCcccCc--ccccccccccCCCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCccc----
Q 012397 183 ----ERVA---VDSRKRNP--ADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFP---- 249 (464)
Q Consensus 183 ----~~~~---~~~~k~~~--~d~~~w~~~~~g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~---- 249 (464)
..+. .+....++ +|+...+-.....+.--..| ...|.|+.++ +++=+..|.-|+..
T Consensus 185 ~~~g~~vlR~K~d~~~~n~~~rD~v~~Ri~~~~h~~~gdk~-~iyPtYdFa~----------~vdD~l~gITHvlct~Ef 253 (574)
T PTZ00437 185 YAEGEATLRVKADMKSDNPNMRDFIAYRVKYVEHPHAKDKW-CIYPSYDFTH----------CLIDSLEDIDYSLCTLEF 253 (574)
T ss_pred cccCCeEEEEeCcCCCCCCccccCeeeeeccCCcCCCCCce-EEEccCcccc----------eeechhcCCCEEeeechh
Confidence 2110 11101111 23333321111111000123 3456655433 33333333332210
Q ss_pred --cchH--HHHHHhhccCCCCccEEEEeeeeeeCCcccccccCCc---------------cCHHHHHH-hcCchhHHHHH
Q 012397 250 --HHEN--EIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNF---------------FTIRQITE-RYHPLALRHFL 309 (464)
Q Consensus 250 --h~~~--~~a~~~a~~~~~~~~~~~~~~~v~~~G~KmSks~gn~---------------i~~~dll~-~~~~dalR~~l 309 (464)
+..- |+ ...++...|.. .+.+-+.++|.|||||+... .++..+.+ .|.|+|||-|+
T Consensus 254 ~~r~~~y~wl--~~~l~l~~p~~--~ef~rln~~~~~LSKRkl~~lV~~g~V~GWDDPRl~Ti~glrrrG~~peAi~~f~ 329 (574)
T PTZ00437 254 ETRRESYFWL--LEELNLWRPHV--WEFSRLNVTGSLLSKRKINVLVRKGIVRGFDDPRLLTLAGMRRRGYTPAAINRFC 329 (574)
T ss_pred hcccHHHHHH--HHHhCCcccce--EeeeeecCCCceeeccchHHhcccCccCCCCCCcchhHHHHHHCCCCHHHHHHHH
Confidence 1111 33 23333333332 34467778999999998884 36666665 59999999999
Q ss_pred hhcCC-CCccCCCHHHHHHHHHH
Q 012397 310 ISAHY-RSPLNYSVLQLDSASDA 331 (464)
Q Consensus 310 l~~~~-~~~~~f~~~~~~~~~~~ 331 (464)
+...+ ..+..++++.+.+..+.
T Consensus 330 ~~~G~sk~~~~i~~~~Le~~nR~ 352 (574)
T PTZ00437 330 ELVGITRSMNVIQISMLENTLRE 352 (574)
T ss_pred HHhCCCccceEeeHHHHHHHHHH
Confidence 98744 57789999999877553
No 97
>PLN02859 glutamine-tRNA ligase
Probab=99.49 E-value=6.8e-13 Score=141.28 Aligned_cols=258 Identities=16% Similarity=0.117 Sum_probs=147.9
Q ss_pred CcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 012397 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDM 117 (464)
Q Consensus 38 ~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l 117 (464)
|+|+.=+ +|.|+|.|||||||++++...+|| +..|.=.+.+.-|| . ..-...|.+.|.+++
T Consensus 263 g~V~tRF-aPsPtG~LHiGharaallN~~~Ar--~~~G~~~LRieDTd---p-------------~r~~~e~~~~I~edL 323 (788)
T PLN02859 263 GKVYTRF-PPEPNGYLHIGHAKAMFVDFGLAK--ERGGCCYLRFDDTN---P-------------EAEKKEYIDHIEEIV 323 (788)
T ss_pred CceEEEe-CCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEecCCC---C-------------CccchHHHHHHHHHH
Confidence 4544333 489999999999999999999999 55676666655555 2 222345889999999
Q ss_pred HhcCCCCCCCCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCC-----------CCCCCCCCCc----ccccccc-
Q 012397 118 ADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK-----------SPNYGRLSGQ----RLENNRA- 181 (464)
Q Consensus 118 ~~lgi~~~~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~-----------~~~~g~l~~~----~~~~~~~- 181 (464)
++||+.+ +...++|++.+.+-+...+|+++|.+| +++|... |+ |...+.. ..+++..
T Consensus 324 ~WLG~~~-d~~~~qSd~f~~~Y~~A~~Li~~G~AY-----~C~ct~eei~~~R~~~~~sp-~Rd~s~eenl~lfe~m~~g 396 (788)
T PLN02859 324 EWMGWEP-FKITYTSDYFQELYELAVELIRRGHAY-----VDHQTPEEIKEYREKKMNSP-WRDRPIEESLKLFEDMRRG 396 (788)
T ss_pred HHcCCCC-CCcccccHhHHHHHHHHHHHHHcCCeE-----eccCCHHHHHHHHhhhccCC-CCCCChHHhhhhhHHHHhc
Confidence 9999985 666788888865556778899999999 5555441 22 1111110 1112221
Q ss_pred ----CCCc---ccCCcccCc--ccccccccccCCCCccc-CCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCccccc
Q 012397 182 ----GERV---AVDSRKRNP--ADFALWKAAKAGEPSWD-SPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHH 251 (464)
Q Consensus 182 ----g~~~---~~~~~k~~~--~d~~~w~~~~~g~~~~~-~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h~ 251 (464)
|..+ ..+....++ +|....+-.....+ +. ..|=+ .|.|+.++. +-....| +.-..-|.|+.. +.
T Consensus 397 ~~~~G~~vlR~Kid~~~~n~~~rD~V~~RI~~~~h~-rtgdk~~i-yPtYdFA~~-vdD~leg--ITHvLRg~E~~~-~~ 470 (788)
T PLN02859 397 LIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHP-HAGDKWCI-YPSYDYAHC-IVDSLEN--ITHSLCTLEFET-RR 470 (788)
T ss_pred hhccCCeEEEEeccCCCCCceeeeceeEEEeccCCC-ccCCCeEE-Eeccccccc-ccccccC--CceEeechhhhc-CC
Confidence 2111 000000011 22222211100000 00 12211 566554321 1011122 333344566321 12
Q ss_pred hHHHHHHhhccCCCCccEEEEeeeeeeCCcccccccCCc---------------cCHHHHHH-hcCchhHHHHHhhcCCC
Q 012397 252 ENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNF---------------FTIRQITE-RYHPLALRHFLISAHYR 315 (464)
Q Consensus 252 ~~~~a~~~a~~~~~~~~~~~~~~~v~~~G~KmSks~gn~---------------i~~~dll~-~~~~dalR~~ll~~~~~ 315 (464)
..+.-+..+++..+|. +.|.+.+.++|.|||||++.. .++..+.+ .|.|+|||-|++...+.
T Consensus 471 ~~y~wl~~aLg~~~P~--~~~f~rLn~~~t~LSKRkl~~lV~~g~V~GWDDPRl~Tl~glRrrG~~PeAi~nFi~~lG~s 548 (788)
T PLN02859 471 ASYYWLLDSLGLYQPY--VWEYSRLNVTNTVMSKRKLNRLVTEKYVDGWDDPRLLTLAGLRRRGVTPTAINAFCRGIGIT 548 (788)
T ss_pred HHHHHHHHHcCCCCCc--EEeeeeECCCCCcccCcCchhccccCcccCCCCCcchhHHHHHHCCCCHHHHHHHHHHhCCC
Confidence 2233445566654444 356677777999999999764 36667766 59999999999987444
Q ss_pred -Ccc-CCCHHHHHHHH
Q 012397 316 -SPL-NYSVLQLDSAS 329 (464)
Q Consensus 316 -~~~-~f~~~~~~~~~ 329 (464)
.+. .|+++.+..+.
T Consensus 549 ~~~~e~i~~~~Le~~~ 564 (788)
T PLN02859 549 RSDNSLIRMDRLEHHI 564 (788)
T ss_pred CCCCceecHHHHHhhC
Confidence 344 69999985443
No 98
>cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases. This domain is found in arginyl tRNA synthetases (ArgRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ArgRS catalyzes the transfer of arginine to the 3'-end of its tRNA.
Probab=99.46 E-value=5.5e-13 Score=118.47 Aligned_cols=140 Identities=11% Similarity=0.011 Sum_probs=117.1
Q ss_pred hcCchhHHHHHhhcCCCCccCCCHHHHHHHHH-HHHHHHHHHHHHHHhcCcccc-CC----C-----ccCCChhHHHHHH
Q 012397 299 RYHPLALRHFLISAHYRSPLNYSVLQLDSASD-AVFYIYQTLQDCEVALSPFQE-HG----K-----TARINPAAEDCIN 367 (464)
Q Consensus 299 ~~~~dalR~~ll~~~~~~~~~f~~~~~~~~~~-~l~~l~~~~~~~~~~l~~~~~-~~----~-----~~~~d~~l~~~l~ 367 (464)
.+|.+++||++++....++++||++.+.+..+ +..+++|+++|+.+++++... .. . .++.|+.|+..+.
T Consensus 2 ~i~~~a~~~~~l~~~~~~~~~fd~~~~~~~~~~~~~yi~ya~aRi~nIl~k~~~~~~~~~~~~~~ll~~~~E~~L~~~l~ 81 (156)
T cd07956 2 EVGVGAVKYQDLSNKRIKDYTFDWERMLSFEGDTGPYLQYAHARLCSILRKAGETIEAEADADLSLLPEPDERDLILLLA 81 (156)
T ss_pred ccchhHHHHHHHhcCCCCCceecHHHHHhhcCCCchhHHHHHHHHHHHHHhCCCcCccccccchhhcCCHHHHHHHHHHH
Confidence 46789999999999999999999999776654 466999999999999877652 11 1 1345678899999
Q ss_pred HHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhcccCch-hhhhhHHHHHHHHHHHHHHHHHhhccCCC
Q 012397 368 KLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPK-QQQLSLIESLRKIENEVKEVLRILGLLPP 440 (464)
Q Consensus 368 ~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~~~~~~~-~~~~~r~~~~~~~~~~l~~~l~lLgi~p~ 440 (464)
.+++.+..++ .+.++..++.. +.+++..+|+||+.+++.... .....|+.++.++..++++++.+|||.|+
T Consensus 82 ~~~~~i~~~~-~~~~~~~l~~~-l~~L~~~~~~ffd~v~V~~~~~~i~~nRL~Ll~~v~~vl~~~l~llgi~~~ 153 (156)
T cd07956 82 KFPEVVKNAA-ETLEPHTIATY-LFDLAHAFSKFYNACPVLGAEEELRNARLALVAAARQVLANGLDLLGIEAP 153 (156)
T ss_pred HhHHHHHHHH-HHcCcHHHHHH-HHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 9999999998 78777777666 999999999999999886543 34678999999999999999999999887
No 99
>KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=2.2e-12 Score=126.08 Aligned_cols=255 Identities=18% Similarity=0.196 Sum_probs=152.0
Q ss_pred ceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q 012397 40 VGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMAD 119 (464)
Q Consensus 40 ~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 119 (464)
|++=+ .|+|+|.||+|-+|+++.--++|| +..|.-++.+-.|| ++|. +..-...+.++|++
T Consensus 34 VRvRF-APSPTGfLHlGgLRTALfNYLfAr--k~gGkFiLRiEDTD------q~R~----------v~gs~e~i~~~L~w 94 (524)
T KOG1149|consen 34 VRVRF-APSPTGFLHLGGLRTALFNYLFAR--KKGGKFILRIEDTD------QKRL----------IRGSEEAIYEDLKW 94 (524)
T ss_pred eEEee-cCCCCcceehhhHHHHHHHHHHHH--hcCCeEEEEecccc------cccc----------ccchHHHHHHHHHh
Confidence 34444 388999999999999999999999 77888888888887 2222 22234679999999
Q ss_pred cCCCCCCCC--------CCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCC--------------CC----CCCCCCC
Q 012397 120 LQCLPPTYQ--------PRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK--------------SP----NYGRLSG 173 (464)
Q Consensus 120 lgi~~~~~~--------~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~--------------~~----~~g~l~~ 173 (464)
+||.+++.. .++|+..+.+++..++|++.|.+| .|||... -| .|..++.
T Consensus 95 ~nl~~DEgP~~gG~~GPY~QS~R~eiY~kyae~Ll~sG~AY-----rCFCs~~rL~~lrk~A~k~~~~p~YD~kca~ls~ 169 (524)
T KOG1149|consen 95 ANLDWDEGPGVGGPFGPYEQSERLEIYKKYAEKLLESGHAY-----RCFCSEERLDLLRKSALKKHEIPRYDRKCANLSD 169 (524)
T ss_pred cCCCcccCCCcCCCCCchhhHHHHHHHHHHHHHHHhcCCee-----EeccCHHHHHHHHHhhhccCCCCcccchhcccCH
Confidence 999974432 456688899999999999999999 6777652 12 3445555
Q ss_pred cccccccc-CCCcccC--CcccCc--cccc----cccccc-CCCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEec
Q 012397 174 QRLENNRA-GERVAVD--SRKRNP--ADFA----LWKAAK-AGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGG 243 (464)
Q Consensus 174 ~~~~~~~~-g~~~~~~--~~k~~~--~d~~----~w~~~~-~g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G 243 (464)
.++....+ |....+. -.++++ .|.. .|.... .|.+. .--.++.|+||.++... .+.++ +.-..-|
T Consensus 170 ~ei~~~lakg~pf~iRFrl~~~~~~f~DLvyG~v~~~~d~~~gD~V--vmKSDgfPTYHfAnVVD-Dh~M~--IsHViRG 244 (524)
T KOG1149|consen 170 AEIKQKLAKGTPFTIRFRLPKESPPFTDLVYGKVNHNVDSNEGDPV--VMKSDGFPTYHFANVVD-DHLMG--ISHVIRG 244 (524)
T ss_pred HHHHHHHhcCCCeeEEEecCCCCCChhhhhhhhhhccccccCCCcE--EEecCCCcceeeeeeec-chhcc--hhheeec
Confidence 55443322 3221110 001111 0111 011100 11110 11235778888664211 11111 1222224
Q ss_pred ccCccccchHHHHHHhhccCCCCccEEEEeeeeee-CCcccccccCCccCHHHHHHh-cCchhHHHHHhhc---CCCCcc
Q 012397 244 IDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITER-YHPLALRHFLISA---HYRSPL 318 (464)
Q Consensus 244 ~D~~~~h~~~~~a~~~a~~~~~~~~~~~~~~~v~~-~G~KmSks~gn~i~~~dll~~-~~~dalR~~ll~~---~~~~~~ 318 (464)
...+.. +.-......|++..||. +.|-..++. +|+|.|||.|. +.+.++.++ |=|+|+=-|++.. ....+-
T Consensus 245 eEWlpS-T~KH~lLYkAfgW~pPk--FaHlpLl~n~d~sKLSKRqgD-~~vs~~~e~G~LPeallN~ial~Gwg~~~~~~ 320 (524)
T KOG1149|consen 245 EEWLPS-TLKHILLYKAFGWQPPK--FAHLPLLLNPDGSKLSKRQGD-ASVSHYREQGYLPEALLNYIALLGWGFRTENE 320 (524)
T ss_pred chhccc-cHHHHHHHHHhCCCCCc--eeeeeeeecCCcchhhhhcCc-chHHHHHHcCCChHHHHHHHHHcCCCcccccc
Confidence 452111 11234444566555554 366555554 99999999999 677777764 7789988888764 334556
Q ss_pred CCCHHHHHH
Q 012397 319 NYSVLQLDS 327 (464)
Q Consensus 319 ~f~~~~~~~ 327 (464)
-|+.+++..
T Consensus 321 f~sl~eLie 329 (524)
T KOG1149|consen 321 FFSLEELIE 329 (524)
T ss_pred cccHHHHHH
Confidence 778887764
No 100
>cd07960 Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial and eukaryotic mitochondrial members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=99.33 E-value=1.9e-11 Score=111.32 Aligned_cols=140 Identities=17% Similarity=0.186 Sum_probs=111.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCccccC------CCccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHH
Q 012397 320 YSVLQLDSASDAVFYIYQTLQDCEVALSPFQEH------GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQD 393 (464)
Q Consensus 320 f~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~------~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~ 393 (464)
|+.+.+.+..+.+.++||+++++.+.+.+.... ......|+|++.++++++.++.++| ++++++.|+.. +++
T Consensus 1 i~~~~~~~~~~~~~Kl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~~~~~~-e~~~f~~a~~~-i~~ 78 (180)
T cd07960 1 ISDEILKQVAEAYRKIRNTFRFLLGNLNDFDPAKDAVPYEELLELDRYALHRLNELIKEVREAY-ENYEFHKVYQA-LNN 78 (180)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHcccCCCcccccCChhhccHHHHHHHHHHHHHHHHHHHHH-HhCCHHHHHHH-HHH
Confidence 466788888889999999998887665543211 1224578999999999999999999 99999999999 999
Q ss_pred HHH--HHHHHhhhhcccCc--hhhhhhHHHHHHHHHHHHHHHHHhhc-cCCCccHHHHHHHhhhh---HhHhcCCCC
Q 012397 394 ALK--FINSSLNMLKKKQP--KQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVKTAFLVL---LHVFFDDSP 462 (464)
Q Consensus 394 l~~--~~n~~~~~~~~~~~--~~~~~~r~~~~~~~~~~l~~~l~lLg-i~p~~~~e~i~~~l~~~---~~~~~~~~~ 462 (464)
++. .+|.|++..+||.. .+.+..+.....++..+++.++.+|+ |+|+ +||+||+.|+.. .+++...||
T Consensus 79 f~~~~l~n~Yi~~~k~~~~~~~~~~~~~~~~~~~l~~~l~~l~~lL~P~~P~-~aeel~~~l~~~~~~~~v~~~~wP 154 (180)
T cd07960 79 FCTVDLSAFYLDIIKDRLYCDAKDSLERRSAQTVLYHILDALLKLLAPILPF-TAEEVWEHLPGEKKEESVFLEDWP 154 (180)
T ss_pred HHHHHHHHHHHHhcccceecCCCCCHHHHHHHHHHHHHHHHHHHHHcchhhh-hHHHHHHhccccCCCCCeeccCCC
Confidence 996 56999999999864 12223344566788999999999999 9999 999999999752 456666666
No 101
>cd07961 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial, archaeal, and eukaryotic cytoplasmic members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=99.25 E-value=8.3e-11 Score=107.38 Aligned_cols=139 Identities=11% Similarity=0.107 Sum_probs=107.6
Q ss_pred CCHHHHHHHHH-HHHHHHHHHHHHHH--hcCccccC------CCccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHH
Q 012397 320 YSVLQLDSASD-AVFYIYQTLQDCEV--ALSPFQEH------GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGA 390 (464)
Q Consensus 320 f~~~~~~~~~~-~l~~l~~~~~~~~~--~l~~~~~~------~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~y 390 (464)
||++.+.+..+ .+.+|||+++++.+ .+.+..+. ......|+|++.++++++.++.++| ++|+++.|+..
T Consensus 1 ~s~~~v~~~~~~f~~KlwN~~rf~l~~~~~~~~~~~~~~~~~~~~~~~D~wil~~l~~~i~~~~~~~-e~~~f~~a~~~- 78 (183)
T cd07961 1 FSEKGVREVVRKVLLPLWNAYRFFVTYANLDGFDPGKDDDAVASLNVLDRWILSRLNSLIKEVTEEM-EAYDLYTAVRA- 78 (183)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccccccccCchhHHHHHHHHHHHHHHHHHHH-HhccHHHHHHH-
Confidence 68889988877 89999999987754 33322111 1235688999999999999999999 99999999999
Q ss_pred HHHHHHHH-HHHhhhhcc--cCchhhhhhHHHHHHHHHHHHHHHHHhhc-cCCCccHHHHHHHhhhh-----HhHhcCCC
Q 012397 391 FQDALKFI-NSSLNMLKK--KQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVKTAFLVL-----LHVFFDDS 461 (464)
Q Consensus 391 l~~l~~~~-n~~~~~~~~--~~~~~~~~~r~~~~~~~~~~l~~~l~lLg-i~p~~~~e~i~~~l~~~-----~~~~~~~~ 461 (464)
+++++... +.|++.+++ |...+ ...+.....++..+++.++.+|+ |+|+ +||+||+.++.. .++....|
T Consensus 79 l~~f~~~~~~~Y~e~~K~~~~~~~~-~~~~~~~~~~l~~~l~~ll~ll~P~~P~-~aEElw~~l~~~~~~~~~si~~~~w 156 (183)
T cd07961 79 LLEFIDELTNWYIRRNRKRFWGEEG-DDDKLAAYATLYEVLLTLSRLMAPFTPF-ITEEIYQNLRRELGDAPESVHLLDW 156 (183)
T ss_pred HHHHHHHhhhhHhhhchHHhcCCCC-chhHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHhhhhcCCCCCceeeecC
Confidence 99999865 778887654 54321 22355567789999999999999 9999 999999999742 35666666
Q ss_pred C
Q 012397 462 P 462 (464)
Q Consensus 462 ~ 462 (464)
|
T Consensus 157 P 157 (183)
T cd07961 157 P 157 (183)
T ss_pred C
Confidence 5
No 102
>cd07962 Anticodon_Ia_Val Anticodon-binding domain of valyl tRNA synthetases. This domain is found in valyl tRNA synthetases (ValRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ValRS catalyzes the transfer of valine to the 3'-end of its tRNA.
Probab=99.25 E-value=1.2e-10 Score=100.91 Aligned_cols=128 Identities=12% Similarity=0.135 Sum_probs=101.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCccccC----CCccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHH
Q 012397 320 YSVLQLDSASDAVFYIYQTLQDCEVALSPFQEH----GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDAL 395 (464)
Q Consensus 320 f~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~----~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~ 395 (464)
||.+.+....+.+.++|+.+..+.......... ......|++++..+++++.++.++| ++++++.|+.. +++++
T Consensus 1 ~~~~~~~~~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~-e~~~~~~al~~-i~~~~ 78 (135)
T cd07962 1 FDEKRVEGGRNFCNKLWNAARFVLMNLEDDDEPEEDPESLSLADRWILSRLNKTVEEVTEAL-ENYRFSEAATA-LYEFF 78 (135)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHcccccCccccccccCCHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHH-HHHHH
Confidence 678888888899999999987663321211110 1123456899999999999999999 99999999999 99999
Q ss_pred H--HHHHHhhhhcccCchhhhhhHHHHHHHHHHHHHHHHHhhc-cCCCccHHHHHHHh
Q 012397 396 K--FINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVKTAF 450 (464)
Q Consensus 396 ~--~~n~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~l~lLg-i~p~~~~e~i~~~l 450 (464)
. .+|+|++..+||....+.......+.++.++++.++.+|. |+|+ +|+++|+.|
T Consensus 79 ~~~~~N~Yi~~~~pW~~~~~~~~~~~~~~~~~~~l~~l~~lL~P~~P~-~ae~l~~~L 135 (135)
T cd07962 79 WNDFCDWYLELVKPRLYGEDEEEKKAARATLYYVLETILRLLHPFMPF-ITEELWQRL 135 (135)
T ss_pred HHHHhHHHHHHhhHHHcCCChHHHHHHHHHHHHHHHHHHHHHCccccH-HHHHHHhcC
Confidence 7 6999999999996432222234466789999999999999 9999 999999875
No 103
>cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases. This domain is found in methionyl tRNA synthetases (MetRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon (CAU). MetRS catalyzes the transfer of methionine to the 3'-end of its tRNA.
Probab=99.21 E-value=2.7e-10 Score=97.49 Aligned_cols=92 Identities=11% Similarity=0.144 Sum_probs=81.1
Q ss_pred cCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhcccCchhh--hhhHHHHHHHHHHHHHHHHH
Q 012397 356 ARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQ--QLSLIESLRKIENEVKEVLR 433 (464)
Q Consensus 356 ~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~~~~~~~~~--~~~r~~~~~~~~~~l~~~l~ 433 (464)
++.|++++.+++++.+++.++| ++++++.|+.. ++++++.+|+|++..+||...+. .+.+...+..+.++++.++.
T Consensus 35 ~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~-~~~~~~~~n~y~~~~kpw~~~~~~~~~~~~~~l~~~~~~l~~~~~ 112 (129)
T cd07957 35 TEEDEELLEEAEELLEEVAEAM-EELEFRKALEE-IMELARAANKYIDETAPWKLAKEEDPERLATVLYVLLELLRILAI 112 (129)
T ss_pred CcccHHHHHHHHHHHHHHHHHH-HhccHHHHHHH-HHHHHHHHHhhhccCCCHHHHccCCHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999 99999999999 99999999999999999975432 23344567889999999999
Q ss_pred hhc-cCCCccHHHHHHHh
Q 012397 434 ILG-LLPPGAYSEVKTAF 450 (464)
Q Consensus 434 lLg-i~p~~~~e~i~~~l 450 (464)
+|+ |+|+ +||+||+.|
T Consensus 113 lL~P~~P~-~aeei~~~l 129 (129)
T cd07957 113 LLSPFMPE-TAEKILDQL 129 (129)
T ss_pred HhcCCCCh-HHHHHHHhC
Confidence 999 9999 999999875
No 104
>cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes archaeal and eukaryotic cytoplasmic members. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=99.16 E-value=5.8e-10 Score=93.84 Aligned_cols=115 Identities=11% Similarity=0.028 Sum_probs=90.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHH-HHHHHHH
Q 012397 320 YSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAF-QDALKFI 398 (464)
Q Consensus 320 f~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl-~~l~~~~ 398 (464)
|+.+.+....|.+.+++..+....... .+....++.|++++.+++++.+++.++| ++++++.|++. + +++.+.+
T Consensus 1 w~~~~~~~~~~~l~R~~~~~~~~~~~~---~~~~~~~~~d~~~~~~~~~~i~~v~~~~-~~~~f~~a~~~-~~~~~~~~~ 75 (117)
T cd07959 1 FREEEANSAILRLERFYELAEELIETE---GELEELTFIDRWLLSRLNRLIKETTEAY-ENMQFREALKE-GLYELQNDL 75 (117)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhcc---CCccccchhHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHH-HHHHHHHHH
Confidence 566777777777777777665422111 1111234678999999999999999999 89999999999 7 9999999
Q ss_pred HHHhhhhcccCchhhhhhHHHHHHHHHHHHHHHHHhhc-cCCCccHHHHHHHh
Q 012397 399 NSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVKTAF 450 (464)
Q Consensus 399 n~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~l~lLg-i~p~~~~e~i~~~l 450 (464)
|+|++..++|. ...++.++++.++.+|+ |+|+ +||+||+.|
T Consensus 76 ~~Y~~~~~~~~----------~~~~~~~~l~~~~~lL~P~~P~-~aeeiw~~~ 117 (117)
T cd07959 76 DWYRERGGAGM----------NKDLLRRFIEVWTRLLAPFAPH-LAEEIWHEL 117 (117)
T ss_pred HHHHHHhCccc----------hHHHHHHHHHHHHHHHcCcchH-hHHHHHhhC
Confidence 99998888761 23578899999999999 9999 999999975
No 105
>cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes bacterial and eukaryotic mitochondrial members, as well as LeuRS from the archaeal Halobacteria. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=99.16 E-value=4.9e-10 Score=94.13 Aligned_cols=115 Identities=8% Similarity=0.132 Sum_probs=93.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHh-cCccccCCCccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHH
Q 012397 320 YSVLQLDSASDAVFYIYQTLQDCEVA-LSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFI 398 (464)
Q Consensus 320 f~~~~~~~~~~~l~~l~~~~~~~~~~-l~~~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~ 398 (464)
|+.+.+.+..|.+.++++.+.+.... .... ......+.|++++..++++.+++.++| ++++++.|+.. ++++++.+
T Consensus 1 w~~~~~~~~~n~l~R~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~-i~~~~~~~ 77 (117)
T cd07958 1 WSDSGVEGAYRFLNRVWRLVTELAEALAAPA-AAAELSEEDKELRRKLHKTIKKVTEDI-ERLRFNTAIAA-LMELVNAL 77 (117)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHhhccccc-cccccchhhHHHHHHHHHHHHHHHHHH-hCCcchHHHHH-HHHHHHHH
Confidence 57788888999999999987654322 1110 001224568999999999999999999 99999999999 99999999
Q ss_pred HHHhhhhcccCchhhhhhHHHHHHHHHHHHHHHHHhhc-cCCCccHHHHHHHh
Q 012397 399 NSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVKTAF 450 (464)
Q Consensus 399 n~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~l~lLg-i~p~~~~e~i~~~l 450 (464)
|+|++...| ...++.++++.++.+|+ |+|+ +||+||+.|
T Consensus 78 n~~~~~~~p------------~~~~~~~~l~~~~~lL~P~~P~-~aeei~~~l 117 (117)
T cd07958 78 YKYKKKDAQ------------HAAVLREALETLVLLLAPFAPH-IAEELWEEL 117 (117)
T ss_pred HHhhccccc------------hHHHHHHHHHHHHHHHcccchH-HHHHHHhhC
Confidence 999876554 34688899999999999 9999 999999875
No 106
>PF05746 DALR_1: DALR anticodon binding domain; InterPro: IPR008909 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids [].; GO: 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1F7V_A 1F7U_A 1BS2_A 1IQ0_A.
Probab=99.00 E-value=1.3e-09 Score=92.06 Aligned_cols=104 Identities=13% Similarity=0.179 Sum_probs=80.8
Q ss_pred HHHHHHHHHHhcCccccCCC----------ccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhh
Q 012397 335 IYQTLQDCEVALSPFQEHGK----------TARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNM 404 (464)
Q Consensus 335 l~~~~~~~~~~l~~~~~~~~----------~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~ 404 (464)
++|+++|++++++++..... .++.++.|+..+.+++..+..++ .+++++.++. |+++++..+|+||+.
T Consensus 1 v~Ya~aRi~sIl~k~~~~~~~~~~~~~~~~~~~~e~~L~~~l~~~~~~l~~a~-~~~~p~~l~~-yL~~La~~f~~fy~~ 78 (119)
T PF05746_consen 1 VQYAYARISSILRKAEESGINDEYDDDFLLEEEEERELLKQLARFPDVLEKAA-KDLEPHKLCD-YLYELAQAFNSFYDN 78 (119)
T ss_dssp HHHHHHHHHHHHHHCTCTTCCCCHCCHHHS-SHHHHHHHHHHCTHHHHHHHHH-HHT-CHHHHH-HHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHcCCCcCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHH-HHHHHHHHHHHHHhh
Confidence 58999999999988753321 14456789999999999999999 7877555555 499999999999999
Q ss_pred hcccCchh-hh-hhHHHHHHHHHHHHHHHHHhhccCCC
Q 012397 405 LKKKQPKQ-QQ-LSLIESLRKIENEVKEVLRILGLLPP 440 (464)
Q Consensus 405 ~~~~~~~~-~~-~~r~~~~~~~~~~l~~~l~lLgi~p~ 440 (464)
++++.... .. ..|+.++.++..+++.++.||||.|+
T Consensus 79 ~~I~~~~~~~~~~~RL~Ll~~v~~vl~~~l~llgi~~~ 116 (119)
T PF05746_consen 79 VRILDEDEEIRKNNRLALLKAVRQVLKNGLDLLGIEPL 116 (119)
T ss_dssp S-STTSTTCHH-HHHHHHHHHHHHHHHHHHHHTT----
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 99987533 33 78999999999999999999999886
No 107
>PF08264 Anticodon_1: Anticodon-binding domain of tRNA; InterPro: IPR013155 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found valyl, leucyl and isoleucyl tRNA synthetases. It binds to the anticodon of the tRNA.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 4DLP_A 1RQG_A 4ARI_A 4AQ7_D 4ARC_A 4AS1_A 1IVS_B 1GAX_B 2CT8_B 2CSX_A ....
Probab=98.96 E-value=1.5e-09 Score=95.93 Aligned_cols=100 Identities=14% Similarity=0.117 Sum_probs=80.4
Q ss_pred ChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHH-HHHH-HHHhhhhcccCchh-hhhhHHHHHHHHHHHHHHHHHhh
Q 012397 359 NPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDA-LKFI-NSSLNMLKKKQPKQ-QQLSLIESLRKIENEVKEVLRIL 435 (464)
Q Consensus 359 d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l-~~~~-n~~~~~~~~~~~~~-~~~~r~~~~~~~~~~l~~~l~lL 435 (464)
|+|++.+++++.+.+.++| ++|+++.|+.. ++.+ ...+ |.|++..++|...+ ....|. +..++.++++.++.+|
T Consensus 1 D~~il~~~~~~~~~~~~~~-e~~~f~~a~~~-i~~f~~~~~~n~Yl~~~k~~~~~~~~~~~~~-~~~~l~~~l~~~~~ll 77 (153)
T PF08264_consen 1 DRWILSKLNELIKKVTEAY-ENYEFNKALKE-IMNFIWNDLSNWYLELIKPWLYCKDDDESRE-AQYTLYEILKILLILL 77 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HTT-HHHHHHH-HHHHHHHHHCHHHHHHHHHHHCTTTTCHHHH-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH-HCCCHHHHHHH-HHHHHHHHHHHHHHHhcccchhcccchhHHH-HHHHHHHHHHHHhhcc
Confidence 6899999999999999999 99999999999 9997 5566 99999999985432 222255 7899999999999999
Q ss_pred c-cCCCccHHHHHHHh-----hhhHhHhcCCCC
Q 012397 436 G-LLPPGAYSEVKTAF-----LVLLHVFFDDSP 462 (464)
Q Consensus 436 g-i~p~~~~e~i~~~l-----~~~~~~~~~~~~ 462 (464)
+ |+|+ +||+||+.| +...++..+.||
T Consensus 78 ~P~~P~-~aEeiw~~l~~~~~~~~~si~~~~~p 109 (153)
T PF08264_consen 78 SPFMPF-IAEEIWQRLKSEKLGEKSSIFLEKWP 109 (153)
T ss_dssp TTTSHH-HHHHHHHHCTTHHTTSSSSGGGS---
T ss_pred CCCCcH-HHHHHHHHhhhccCCCCCeeeeCCCC
Confidence 9 9999 999999655 444556666666
No 108
>smart00836 DALR_1 DALR anticodon binding domain. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids PUBMED:10447505.
Probab=98.61 E-value=2e-07 Score=79.04 Aligned_cols=104 Identities=14% Similarity=0.141 Sum_probs=83.6
Q ss_pred HHHHHHHHHHhcCcccc-C-C------C-----ccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHH
Q 012397 335 IYQTLQDCEVALSPFQE-H-G------K-----TARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSS 401 (464)
Q Consensus 335 l~~~~~~~~~~l~~~~~-~-~------~-----~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~ 401 (464)
++|+++|+++++++... . . . .++.++.|+..+.++.+.+..++ .+.+++.++.. +.+++..+|+|
T Consensus 1 iqY~~~Ri~nIl~k~~~~~~~~~~~~~~~~~l~~~~~E~~L~~~i~~~~~~i~~~~-~~~~~~~l~~~-l~~L~~~~~~f 78 (122)
T smart00836 1 VQYAHARICSILRKAGEAGLTLPDIADADLSLLTEPEELALLRLLARFPEVLEAAA-ETLEPHRLANY-LYDLASAFHSF 78 (122)
T ss_pred CcHHHHHHHHHHHHHHhcCCCccccccchhhhcCCHHHHHHHHHHHHHHHHHHHHH-HHCCcHHHHHH-HHHHHHHHHHH
Confidence 46888999888776542 1 0 1 14456788899999999999988 77776666655 99999999999
Q ss_pred hhhhcccCch--hhhhhHHHHHHHHHHHHHHHHHhhccCCC
Q 012397 402 LNMLKKKQPK--QQQLSLIESLRKIENEVKEVLRILGLLPP 440 (464)
Q Consensus 402 ~~~~~~~~~~--~~~~~r~~~~~~~~~~l~~~l~lLgi~p~ 440 (464)
|+.+++.+.. .....|+.++..+..++..++.+|||.|+
T Consensus 79 y~~v~V~~~~~~~~~~~RL~Ll~~~~~~l~~~~~llgi~~~ 119 (122)
T smart00836 79 YNKCRVLGEENPELRAARLALLKAVRQVLANGLRLLGISAP 119 (122)
T ss_pred HccCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 9999987653 34678999999999999999999999886
No 109
>cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains. This domain is found in a variety of class Ia aminoacyl tRNA synthetases, C-terminal to the catalytic core domain. It recognizes and specifically binds to the anticodon of the tRNA. Aminoacyl tRNA synthetases catalyze the transfer of cognate amino acids to the 3'-end of their tRNAs by specifically recognizing cognate from non-cognate amino acids. Members include valyl-, leucyl-, isoleucyl-, cysteinyl-, arginyl-, and methionyl-tRNA synthethases. This superfamily also includes a domain from MshC, an enzyme in the mycothiol biosynthetic pathway.
Probab=98.58 E-value=8e-07 Score=74.10 Aligned_cols=110 Identities=13% Similarity=0.096 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCccccC---CCccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHH
Q 012397 323 LQLDSASDAVFYIYQTLQDCEVALSPFQEH---GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFIN 399 (464)
Q Consensus 323 ~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~---~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n 399 (464)
+.+.+..+....+++.+..+........+. ....+.|+|++.+++++++++.++| ++++++.|+.. ++++++.+|
T Consensus 2 ~~v~~~~~~~n~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~-e~~~~~~a~~~-i~~~~~~~n 79 (117)
T cd07375 2 ERLKQARAFLNRLYRLLSFFRKALGGTQPKWDNELLEEADRELLARLQEFIKRTTNAL-EALDPTTAVQE-LFKFTNELN 79 (117)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcChhhcCHhhHHHHHHHHHHHHHHHHHH-HhCCHHHHHHH-HHHHHHhcc
Confidence 344555554545555444433322221110 0114467999999999999999999 99999999999 999999999
Q ss_pred HHhhhhcccCchhhhhhHHHHHHHHHHHHHHHHHhhc
Q 012397 400 SSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG 436 (464)
Q Consensus 400 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~l~lLg 436 (464)
+|++..+||...+. .+...+..+.++++.++.+|+
T Consensus 80 ~y~~~~~pw~~~~~--~~~~~~~~~~~~l~~l~~lL~ 114 (117)
T cd07375 80 WYLDELKPALQTEE--LREAVLAVLRAALVVLTKLLA 114 (117)
T ss_pred HHHHHhhHHHcCch--hHHHHHHHHHHHHHHHHHHHc
Confidence 99999999975432 233345667777888887776
No 110
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.14 E-value=1.2e-05 Score=81.53 Aligned_cols=98 Identities=26% Similarity=0.307 Sum_probs=77.1
Q ss_pred CcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 012397 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDM 117 (464)
Q Consensus 38 ~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l 117 (464)
|+|.+=+ +|-|+|.||||||..+++-.-+|- +..|.=... .||- .|..-.++|.+.+.+++
T Consensus 199 GkVv~RF-PPEpSGyLHIGHAKAALLNqYfa~--~~~G~LIvR---FDDT-------------NPaKE~~eFe~~IleDl 259 (712)
T KOG1147|consen 199 GKVVTRF-PPEPSGYLHIGHAKAALLNQYFAQ--AYQGKLIVR---FDDT-------------NPAKENEEFEDVILEDL 259 (712)
T ss_pred CceEEec-CCCCCceeehhhHHHHHHHHHHHH--hcCceEEEE---ecCC-------------CcchhhHHHHHHHHHHH
Confidence 5555544 489999999999999987777665 555654443 3432 23333466899999999
Q ss_pred HhcCCCCCCCCCCcchhHHHHHHHHHHHHHCCceEeec
Q 012397 118 ADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVE 155 (464)
Q Consensus 118 ~~lgi~~~~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~ 155 (464)
..|||. ++.++.+|+|.+.+..+..+|++.|-+|..+
T Consensus 260 ~~LgIk-pd~~TyTSDyF~~i~dycv~likeGKAYvDD 296 (712)
T KOG1147|consen 260 SLLGIK-PDRVTYTSDYFDEIMDYCVKLIKEGKAYVDD 296 (712)
T ss_pred HHhCcC-cceeeechhhHHHHHHHHHHHHhcCcccccC
Confidence 999998 5999999999999999999999999999764
No 111
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=97.81 E-value=0.00016 Score=71.90 Aligned_cols=83 Identities=17% Similarity=0.119 Sum_probs=45.4
Q ss_pred eEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q 012397 41 GMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADL 120 (464)
Q Consensus 41 ~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l 120 (464)
..+.+|--|+|.+||||.-+++ ..+++-..|+++.+. -.|.|.. .. ..+.+++ ........+..++-..
T Consensus 3 ~~v~~G~~PTG~~HlG~~l~~~----~~~~~~q~~~~~~i~-IaD~ha~---t~--~~~~~~~-~~~~~~~~~~~~~lA~ 71 (328)
T TIGR00233 3 FRVLTGIQPSGKMHLGHYLGAI----QTKWLQQFGVELFIC-IADLHAI---TV--KDNTDPD-ALRKAREELAADILAV 71 (328)
T ss_pred CEEEEeeCCCcHhHHHHHHHHH----HHHHHHhCCCCEEEE-eecchhh---cC--CCCCCHH-HHHHHHHHHHHHHHHh
Confidence 3567889999999999955554 333333678887644 3333321 00 0111222 2233445556677788
Q ss_pred CCCCCC-CCCCcchh
Q 012397 121 QCLPPT-YQPRVSDH 134 (464)
Q Consensus 121 gi~~~~-~~~r~s~~ 134 (464)
|+.+.- .+.+.|+.
T Consensus 72 GlDp~k~~if~qS~~ 86 (328)
T TIGR00233 72 GLDPKKTFIFLQSDY 86 (328)
T ss_pred CcChhheEEEEcCCc
Confidence 987421 23444544
No 112
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=97.77 E-value=0.00021 Score=72.01 Aligned_cols=87 Identities=23% Similarity=0.198 Sum_probs=53.2
Q ss_pred CCcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 012397 37 RGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVD 116 (464)
Q Consensus 37 ~~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 116 (464)
.++...+.+|--|+|.+||||.- ....+.++++ .|+++. +.-.|+|.- ...+.+++++ +++...+..+
T Consensus 63 ~~~~~~iytG~~PSG~lHLGh~~---~~~~~~~lQ~-~g~~~~-i~IaD~ha~------~~~~~~~e~~-~~~~~~~~~~ 130 (368)
T PRK12285 63 NGKPFAVYTGFMPSGPMHIGHKM---VFDELKWHQE-FGANVY-IPIADDEAY------AARGLSWEET-REWAYEYILD 130 (368)
T ss_pred cCCCeEEEEccCCCCCccHHHHH---HHHHHHHHHh-cCCCEE-EEecchHHH------hcCCCCHHHH-HHHHHHHHHH
Confidence 35667788999999999999963 3344455444 888864 344554432 1113455544 4455567888
Q ss_pred HHhcCCCCC-CCCCCcchhH
Q 012397 117 MADLQCLPP-TYQPRVSDHM 135 (464)
Q Consensus 117 l~~lgi~~~-~~~~r~s~~~ 135 (464)
+..+|+.+. ..+...|+..
T Consensus 131 ~lA~G~Dp~k~~i~~qS~~~ 150 (368)
T PRK12285 131 LIALGFDPDKTEIYFQSENI 150 (368)
T ss_pred HHHhCCCccceEEEECCchH
Confidence 889999742 1234445443
No 113
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=97.75 E-value=6.9e-05 Score=76.63 Aligned_cols=72 Identities=17% Similarity=0.153 Sum_probs=42.5
Q ss_pred CeeEEEecccCccccchHHHHHHhhccCCCCccEEEEeeeee-eCCcccccccCCccCHHHHHHhcCchhHHHHHhhc
Q 012397 236 KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 312 (464)
Q Consensus 236 ~~~i~~~G~D~~~~h~~~~~a~~~a~~~~~~~~~~~~~~~v~-~~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~ 312 (464)
.++++++|.|+...+. ...-...-.+...+. .++...++ .+|.|||||.||.|++.| +..+|..++=++.+.
T Consensus 186 ~~~iq~gG~DQ~~ni~-~grdl~~r~~~~~~~--~lt~PlL~g~dG~KMsKS~~naI~L~d--~~tsp~~i~qki~~~ 258 (410)
T PRK13354 186 DVDLQIGGTDQWGNIL-MGRDLQRKLEGEEQF--GLTMPLLEGADGTKMGKSAGGAIWLDP--EKTSPYEFYQFWMNI 258 (410)
T ss_pred CCCEEEecHHHHHHHH-HHHHHHHHhCCCCce--EeccCCccCCCCCccCCCCCCceeccC--CCCCHHHHHHHHHcC
Confidence 6889999999653322 112222222333322 23333443 489999999999999887 334466666555543
No 114
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.61 E-value=0.00068 Score=66.13 Aligned_cols=74 Identities=14% Similarity=-0.019 Sum_probs=47.1
Q ss_pred ceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCC-eEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q 012397 40 VGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKC-EVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMA 118 (464)
Q Consensus 40 ~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~-~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~ 118 (464)
...+.||-.|+|.|||||.-.++ -.++.-..++ ++ |++-.|.|.-. -.+.++++-.+++..++..++-
T Consensus 5 ~~~vlSG~~PSG~lHLGny~ga~----~~~v~~q~~~~~~-f~~IaDlha~t------~~~~~~~~~l~~~~~e~~a~~L 73 (314)
T COG0180 5 KFRVLSGIQPSGKLHLGNYLGAI----RNWVLLQEEYYEC-FFFIADLHAIT------VRQDPTEEDLRQATREVAADYL 73 (314)
T ss_pred CceEEecCCCCCCcchhHhHHHH----HHHHHHhcccCce-EEEEecHHHhh------cCCCChHHHHHHHHHHHHHHHH
Confidence 35677899999999999966553 3333334443 44 44556655421 1233444556667777888888
Q ss_pred hcCCCC
Q 012397 119 DLQCLP 124 (464)
Q Consensus 119 ~lgi~~ 124 (464)
.+|+.+
T Consensus 74 A~GiDP 79 (314)
T COG0180 74 AVGLDP 79 (314)
T ss_pred HhccCc
Confidence 899985
No 115
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=97.57 E-value=0.00024 Score=70.74 Aligned_cols=75 Identities=13% Similarity=-0.080 Sum_probs=45.1
Q ss_pred CcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 012397 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDM 117 (464)
Q Consensus 38 ~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l 117 (464)
++...+.+|--|+|.+||||+.... .+.++++ .|+++.+. =.|.|..-. ...++ +-..++...+...+
T Consensus 28 ~~~~~v~~G~~PTG~lHLG~~~~~~---~~~~lq~-~g~~~~i~-IaD~ha~~~------~~~~~-~~i~~~~~~~~~~~ 95 (329)
T PRK08560 28 KEEPKAYIGFEPSGKIHLGHLLTMN---KLADLQK-AGFKVTVL-LADWHAYLN------DKGDL-EEIRKVAEYNKKVF 95 (329)
T ss_pred CCCCEEEEccCCCCcchhhhhHHHH---HHHHHHH-CCCeEEEE-EccchhhcC------CCCCH-HHHHHHHHHHHHHH
Confidence 4444566899999999999965433 2455544 68886544 233332100 00233 34445666788888
Q ss_pred HhcCCCC
Q 012397 118 ADLQCLP 124 (464)
Q Consensus 118 ~~lgi~~ 124 (464)
..+|+.+
T Consensus 96 ~A~G~dp 102 (329)
T PRK08560 96 EALGLDP 102 (329)
T ss_pred HHcCCCh
Confidence 8999874
No 116
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=97.56 E-value=0.00018 Score=73.62 Aligned_cols=72 Identities=18% Similarity=0.121 Sum_probs=43.9
Q ss_pred CeeEEEecccCccccchHHHHHHhhccCCCCccEEEEeeeee-eCCcccccccCCccCHHHHHHhcCchhHHHHHhhc
Q 012397 236 KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 312 (464)
Q Consensus 236 ~~~i~~~G~D~~~~h~~~~~a~~~a~~~~~~~~~~~~~~~v~-~~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~ 312 (464)
.++++++|.|+.. |.....-...-.+.++.. -++...++ .+|+|||||.||.|++.| +.-+|..++=++.+.
T Consensus 188 ~~~i~~gG~DQ~~-ni~~grdla~r~~~~~~~--~l~~plL~~~~G~KMsKS~~naI~L~d--~~tsp~~i~qki~~~ 260 (408)
T PRK05912 188 GCDLQLGGSDQWG-NILSGRDLQRRYGGKPQF--GLTMPLLTGLDGKKMGKSEGNAVWLDE--EKTSPYEMYQKWMNI 260 (408)
T ss_pred CCCEEeccHHHHH-HHHHHHHHHHHhCCCCeE--EEecCCcCCCCCCcccCCCCCceeCCC--CCCCHHHHHHHHhcC
Confidence 6899999999763 333222222222322222 12333343 389999999999999887 455666666666653
No 117
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=97.47 E-value=0.0006 Score=66.10 Aligned_cols=72 Identities=13% Similarity=0.187 Sum_probs=42.1
Q ss_pred EEeCCCCCC-cCCcccchhHHHHHHHHHHHHHCCCeEEEecC-----Cccc-cHHHHHHHHHcCCChHHHHHHHHHHHHH
Q 012397 43 YVCGVTAYD-LSHLGHARAAVSFDLLYRYLEHLKCEVTYVRN-----FTDV-DDKIIRRANDLGENPLSLSNRYCQEYLV 115 (464)
Q Consensus 43 ~~~~P~p~G-~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~-----~dd~-g~~i~~~a~~~g~~~~~~~~~~~~~~~~ 115 (464)
+.+|--|+| .|||||.-+. . ..+++...|+++.++-+ ++|. |... ++.-.+ .+-..++...+..
T Consensus 2 iy~G~~PTg~~lHlGh~~~l---~-~~~~lq~~g~~~~~~I~d~~a~~~d~sg~~~----~r~~~~-~~~i~~n~~~~~~ 72 (273)
T cd00395 2 LYCGIDPTADSLHIGHLIGL---L-TFRRFQHAGHRPIFLIGGQTGIIGDPSGKKS----ERTLND-PEEVRQNIRRIAA 72 (273)
T ss_pred eEEeEcCCCCCccHHHHHHH---H-HHHHHHHCCCCEEEEEecCceeeCCCCCccc----cccCCC-HHHHHHHHHHHHH
Confidence 357788999 7999996553 2 33444557999876543 2221 2100 011113 3444556777888
Q ss_pred HHHhcCCC
Q 012397 116 DMADLQCL 123 (464)
Q Consensus 116 ~l~~lgi~ 123 (464)
.+.++|+.
T Consensus 73 ~~~a~g~d 80 (273)
T cd00395 73 QYLAVGIF 80 (273)
T ss_pred HHHHhcCc
Confidence 88888875
No 118
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=97.45 E-value=6.4e-05 Score=73.80 Aligned_cols=42 Identities=19% Similarity=0.161 Sum_probs=29.5
Q ss_pred CcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecC
Q 012397 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRN 83 (464)
Q Consensus 38 ~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~ 83 (464)
++...+.+|--|+|.+||||+.+.. ..+.+...|++|.+.-+
T Consensus 3 ~~~~~~y~G~~PTg~lHlG~l~~~~----~~~~lq~~g~~~~i~ia 44 (292)
T PF00579_consen 3 NKPFRVYTGIDPTGDLHLGHLVPIM----KLIWLQKAGFKVIILIA 44 (292)
T ss_dssp HSSEEEEEEEESSSS-BHHHHHHHH----HHHHHHHTTSEEEEEEE
T ss_pred CCCcEEEEeECCCCcccchHHHHHH----HHHHHHhcCCccceEec
Confidence 3456677889999999999988775 33344448999986653
No 119
>PF09190 DALR_2: DALR domain; InterPro: IPR015273 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This DALR domain is found in cysteinyl-tRNA-synthetases []. ; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1LI5_B 1LI7_B 1U0B_B 3TQO_A.
Probab=97.42 E-value=0.00065 Score=50.31 Aligned_cols=60 Identities=32% Similarity=0.475 Sum_probs=42.1
Q ss_pred HHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhcccCchhhhhhHHHHHHHHHHHHHHHHHhhccCCCccHH
Q 012397 372 EFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYS 444 (464)
Q Consensus 372 ~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~l~lLgi~p~~~~e 444 (464)
++.++|+|++++|.|++. |+++++.+|+-.. .. ....+..+...++.+..+|||... ..+
T Consensus 1 ~F~~AmdDDfNT~~Ala~-lf~l~~~~N~~~~--~~---------~~~~~~~~~~~l~~~~~vLGl~~~-~~~ 60 (63)
T PF09190_consen 1 EFIEAMDDDFNTPEALAA-LFELVKEINRALE--SN---------DKEDLEALAAALRKLLDVLGLLQE-DPE 60 (63)
T ss_dssp HHHHHHCBTS-HHHHHHH-HHHHHHHHHHHHH--CC----------HHHHHHHHHHHHHHHHCCT-S-S--HH
T ss_pred ChHHHHhHhcCcHHHHHH-HHHHHHHHHHhcc--cC---------CHHHHHHHHHHHHHHHhcCcCCCC-CHH
Confidence 468899999999999999 9999999999221 11 122335556788888999998765 444
No 120
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=97.35 E-value=0.00038 Score=67.43 Aligned_cols=75 Identities=13% Similarity=0.043 Sum_probs=43.9
Q ss_pred EEeCCCCCC-cCCcccchhHHHHHHHHHHHHHCCCeEEEecCCcccc---HHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q 012397 43 YVCGVTAYD-LSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVD---DKIIRRANDLGENPLSLSNRYCQEYLVDMA 118 (464)
Q Consensus 43 ~~~~P~p~G-~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g---~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~ 118 (464)
+.+|--|+| .+||||.-.+ -.+.++++ .|+++.+.-+ |.|. .+.-...++.+.++++ ..++...+...+.
T Consensus 3 iy~G~~PTg~~lHLG~~~~~---~~~~~lq~-~g~~~~ilI~-D~~a~~~~~~~~~~~r~~~~~~~-i~~~~~~~~~~~~ 76 (269)
T cd00805 3 VYIGFDPTAPSLHLGHLVPL---MKLRDFQQ-AGHEVIVLIG-DATAMIGDPSGKSEERKLLDLEL-IRENAKYYKKQLK 76 (269)
T ss_pred EEEeeCCCCCcccHHHHHHH---HHHHHHHH-CCCeEEEEEC-CCeeecCCCCCccccccCCCHHH-HHHHHHHHHHHHH
Confidence 457788999 9999995543 35666665 5988875543 1121 1110111122345544 4456667888888
Q ss_pred hcCCC
Q 012397 119 DLQCL 123 (464)
Q Consensus 119 ~lgi~ 123 (464)
.+|..
T Consensus 77 a~g~~ 81 (269)
T cd00805 77 AILDF 81 (269)
T ss_pred HHHcc
Confidence 88874
No 121
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=97.31 E-value=0.00083 Score=65.38 Aligned_cols=71 Identities=17% Similarity=0.140 Sum_probs=44.5
Q ss_pred EEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCC
Q 012397 43 YVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQC 122 (464)
Q Consensus 43 ~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi 122 (464)
+.+|--|+|.|||||.-+++. ..+.++..|+++.+. =.|.|.. + ....++ +-.+++...+..++.++|+
T Consensus 2 i~tG~~PTG~lHLG~~~~al~---~~~~lQ~ag~~~~~~-IaD~ha~-t-----~~~~~~-~~~~~~~~~~~~~~lA~G~ 70 (280)
T cd00806 2 VLSGIQPSGSLHLGHYLGAFR---FWVWLQEAGYELFFF-IADLHAL-T-----VKQLDP-EELRQNTRENAKDYLACGL 70 (280)
T ss_pred EEEeeCCCchhhHHHHHHHHH---HHHHHHhCCCCEEEE-ecchHHH-h-----CCCCCH-HHHHHHHHHHHHHHHHcCC
Confidence 467888999999999776443 333445568887654 3333332 1 011233 3445566778888888999
Q ss_pred CC
Q 012397 123 LP 124 (464)
Q Consensus 123 ~~ 124 (464)
.+
T Consensus 71 dp 72 (280)
T cd00806 71 DP 72 (280)
T ss_pred Cc
Confidence 74
No 122
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=97.28 E-value=0.0013 Score=66.63 Aligned_cols=87 Identities=8% Similarity=0.019 Sum_probs=48.2
Q ss_pred CcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 012397 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDM 117 (464)
Q Consensus 38 ~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l 117 (464)
++...+.+|--|+|.+|||| .++..--+.. +...|++|.+.-+ |-|.. +- ...|.+++.+ +.....+...+
T Consensus 64 ~~~~~v~~G~~PTG~lHLG~--g~i~~~~~~~-lq~~G~~v~~~Ia-D~hA~-~~---~~~g~~l~~i-~~~~~~~~~~~ 134 (383)
T PTZ00126 64 KERPICYDGFEPSGRMHIAQ--GILKAINVNK-LTKAGCVFVFWVA-DWFAL-LN---NKMGGDLEKI-RKVGEYFIEVW 134 (383)
T ss_pred CCCCEEEEEECCCCcccccc--hHhHhHHHHH-HHhCCCeEEEEEc-cceee-cC---CCCCCCHHHH-HHHHHHHHHHH
Confidence 45556778899999999999 2222223333 3467998876532 11110 00 0122344443 44556677788
Q ss_pred HhcCCCCC-CCCCCcch
Q 012397 118 ADLQCLPP-TYQPRVSD 133 (464)
Q Consensus 118 ~~lgi~~~-~~~~r~s~ 133 (464)
..+|+.+. ..+...|+
T Consensus 135 ~A~GlDp~k~~i~~qS~ 151 (383)
T PTZ00126 135 KAAGMDMDNVRFLWASE 151 (383)
T ss_pred HHhCCCccceEEEECCh
Confidence 99999742 13344454
No 123
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.19 E-value=0.00048 Score=69.66 Aligned_cols=54 Identities=20% Similarity=0.051 Sum_probs=34.3
Q ss_pred CeeEEEecccCccccchHHHHHHhhccCCCCccEEEEeeeeee-CCcccccccCCccC
Q 012397 236 KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFT 292 (464)
Q Consensus 236 ~~~i~~~G~D~~~~h~~~~~a~~~a~~~~~~~~~~~~~~~v~~-~G~KmSks~gn~i~ 292 (464)
..|++++|.|+.+.|..+ .-.....+.+ +.+.+|...++- +|+|||||.||.++
T Consensus 180 ~~dlq~GG~DQ~~ni~~g-rdl~rr~g~~--~~~~lt~PLL~~ldG~KmgKs~~~a~~ 234 (401)
T COG0162 180 NKDLQLGGSDQWGNILAG-RDLIRRLGQK--KVVGLTTPLLTGLDGKKMGKSEGGAVW 234 (401)
T ss_pred ccchhcCChHHHHHHHHH-HHHHHHhCCC--CeEEEEeccccCCCCCcccccCCCceE
Confidence 467999999976666533 2222233442 333456555553 99999999999443
No 124
>KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.03 E-value=0.0018 Score=66.85 Aligned_cols=97 Identities=25% Similarity=0.223 Sum_probs=67.5
Q ss_pred CCcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 012397 37 RGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVD 116 (464)
Q Consensus 37 ~~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 116 (464)
+|+|.-=+ +|-|+|.||||||-.+-+-=-+|++ ..|. .|.-.=| ..|+.-.++|-..|.++
T Consensus 246 GGkV~TRF-PPEPNG~LHIGHaKAInvNFgyAk~--~~G~--cyLRfDD--------------TNPEkEee~yf~sI~e~ 306 (764)
T KOG1148|consen 246 GGKVVTRF-PPEPNGILHIGHAKAINVNFGYAKA--HGGV--CYLRFDD--------------TNPEKEEEEYFESIKEM 306 (764)
T ss_pred CCeeEEeC-CCCCCceeeecchhheeechhhhhh--hCCe--EEEecCC--------------CCcchhhHHHHHHHHHH
Confidence 34543333 5889999999998654433334442 2332 2222211 24555567799999999
Q ss_pred HHhcCCCCCCCCCCcchhHHHHHHHHHHHHHCCceEe
Q 012397 117 MADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYV 153 (464)
Q Consensus 117 l~~lgi~~~~~~~r~s~~~~~~~~~~~~L~~~G~~y~ 153 (464)
.+|||..+ -..+.+|++.+..-++-.+|+.+|++|.
T Consensus 307 V~WLG~~P-~kvTysSDyFdqLy~~av~LIrkG~AYV 342 (764)
T KOG1148|consen 307 VAWLGFEP-YKVTYSSDYFDQLYELAVELIRKGKAYV 342 (764)
T ss_pred HHHhCCCc-eeeecchhHHHHHHHHHHHHHhcCceeE
Confidence 99999984 6677788999988889999999999994
No 125
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=96.56 E-value=0.011 Score=63.84 Aligned_cols=86 Identities=7% Similarity=-0.068 Sum_probs=45.3
Q ss_pred cceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q 012397 39 KVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMA 118 (464)
Q Consensus 39 ~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~ 118 (464)
+...+.+|--|+|.+||||. +++-+-.+.+...|++|.+.- .|-|. - . -.+.|.+...... ....+.+.+.
T Consensus 31 ~~~rv~sGi~PTG~lHLGng---~~~aik~~~~~q~g~~~~~lI-AD~HA-l--t-~~~~~~~l~~i~~-~~~~~~~~~l 101 (682)
T PTZ00348 31 PLIRCYDGFEPSGRMHIAQG---IFKAVNVNKCTQAGCEFVFWV-ADWFA-L--M-NDKVGGELEKIRI-VGRYLIEVWK 101 (682)
T ss_pred CCCEEEEeeCCCCcCeeccH---HHHHHHHHHHHhCCCeEEEEE-cchhh-h--c-CCCCCCCHHHHHH-HHHHHHHHHH
Confidence 33457788999999999992 223112222345798876542 11111 0 0 0112223333322 2345667888
Q ss_pred hcCCCCC-CCCCCcch
Q 012397 119 DLQCLPP-TYQPRVSD 133 (464)
Q Consensus 119 ~lgi~~~-~~~~r~s~ 133 (464)
.+|+.+. ..+.+.|+
T Consensus 102 A~GlDpeK~~~~~qSd 117 (682)
T PTZ00348 102 AAGMDMDKVLFLWSSE 117 (682)
T ss_pred HcCCCccceEEEECcH
Confidence 9999753 13555554
No 126
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=96.52 E-value=0.0077 Score=61.11 Aligned_cols=39 Identities=21% Similarity=0.162 Sum_probs=27.7
Q ss_pred ceEEEeCCCCCC-cCCcccchhHHHHHHHHHHHHHCCCeEEEec
Q 012397 40 VGMYVCGVTAYD-LSHLGHARAAVSFDLLYRYLEHLKCEVTYVR 82 (464)
Q Consensus 40 ~~v~~~~P~p~G-~lHiGHar~~l~~D~laR~lr~~G~~V~~i~ 82 (464)
...+.+|--|+| .|||||+-+ .-.+.++ ...|+++.++-
T Consensus 30 ~~~vy~G~dPTg~~lHlGh~v~---l~~l~~l-q~~G~~~~ili 69 (377)
T TIGR00234 30 KIKLYVGFDPTAPSLHLGHLVP---LLKLRDF-QQAGHEVIVLL 69 (377)
T ss_pred CCEEEEeeCCCCCCccHHHHHH---HHHHHHH-HHCCCcEEEEE
Confidence 346678899999 999999544 3334444 45799998764
No 127
>smart00840 DALR_2 This DALR domain is found in cysteinyl-tRNA-synthetases.
Probab=96.46 E-value=0.0095 Score=42.70 Aligned_cols=54 Identities=28% Similarity=0.354 Sum_probs=39.2
Q ss_pred HHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhcccCchhhhhhHHHHHHHHHHHHHHHHHhhcc
Q 012397 373 FHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGL 437 (464)
Q Consensus 373 v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~l~lLgi 437 (464)
+.++|+|++++|.|++. ++++++.+|++.+... . . ..+..+...++.++.+||+
T Consensus 2 f~~al~DD~NT~~Al~~-l~~l~~~~N~~l~~~~--~----~----~~~~~~~~~~~~~~~ilGl 55 (56)
T smart00840 2 FEEAMDDDFNTPEALAV-LFELAREINRLLLKAV--D----A----EELAALAALLRALGGVLGL 55 (56)
T ss_pred hHHHhhcccCcHHHHHH-HHHHHHHHHHHhhccc--C----H----HHHHHHHHHHHHHHhccCC
Confidence 67889999999999999 9999999999874321 0 0 1133444556666777875
No 128
>cd07963 Anticodon_Ia_Cys Anticodon-binding domain of cysteinyl tRNA synthetases. This domain is found in cysteinyl tRNA synthetases (CysRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. CysRS catalyzes the transfer of cysteine to the 3'-end of its tRNA.
Probab=96.40 E-value=0.1 Score=46.11 Aligned_cols=90 Identities=23% Similarity=0.259 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCccccCCCccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHh
Q 012397 323 LQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSL 402 (464)
Q Consensus 323 ~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~ 402 (464)
+.+.++.+.+.++++++.++. .+. .. ...+..+.+.+.++|+|++++|.|++. |+++++.+|+++
T Consensus 2 e~L~~A~~~l~rl~~~~~~l~-~~~--------~~-----~~~~~~~~~~f~~Al~DDlNt~~Ala~-l~~l~k~~n~~~ 66 (156)
T cd07963 2 DNLEDARAALERLYTALRGVP-PTT--------VD-----IDWGEPFAERFIAAMDDDFNTPEALAV-LFELAREINRLK 66 (156)
T ss_pred hHHHHHHHHHHHHHHHHHhhH-hcc--------cc-----hhhHHHHHHHHHHHHhccCCcHHHHHH-HHHHHHHHHHHh
Confidence 467788888999988887653 110 00 112445668999999999999999999 999999999987
Q ss_pred hhhcccCchhhhhhHHHHHHHHHHHHHHHHHhhccCC
Q 012397 403 NMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLP 439 (464)
Q Consensus 403 ~~~~~~~~~~~~~~r~~~~~~~~~~l~~~l~lLgi~p 439 (464)
+.. + . .+......+..++.+|||..
T Consensus 67 ~~~-~------~-----~~~~~~~~l~~~~~vLGl~~ 91 (156)
T cd07963 67 KED-I------E-----KAAALAALLKALGGVLGLLQ 91 (156)
T ss_pred ccc-h------H-----HHHHHHHHHHHHHhccCCCC
Confidence 531 1 0 12334455666788999743
No 129
>cd07955 Anticodon_Ia_Cys_like Anticodon-binding domain of cysteinyl tRNA synthetases and domain found in MshC. This domain is found in cysteinyl tRNA synthetases (CysRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. CysRS catalyzes the transfer of cysteine to the 3'-end of its tRNA. The family also includes a domain of MshC, the rate-determining enzyme in the mycothiol biosynthetic pathway, which is specific to actinomycetes. The anticodon-binding site of CysRS lies C-terminal to this model's footprint and is not shared by MshC.
Probab=93.99 E-value=0.22 Score=38.73 Aligned_cols=58 Identities=14% Similarity=0.096 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCccccCCCccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHH-HH
Q 012397 323 LQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFI-NS 400 (464)
Q Consensus 323 ~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~-n~ 400 (464)
+.+.++.+.+.++++++.++. . + ....+.+++.++|+|++++|.|++. |+++++.+ |+
T Consensus 2 e~L~~A~~~l~rl~~~l~~~~-------~-----~-------~~~~~~~~F~~AL~DDLNTp~Ala~-L~~l~k~i~~~ 60 (81)
T cd07955 2 EVLADAEARLARWRSAVALPD-------G-----P-------DAEALVARLREALADDLDTPKALAA-LDAWAREALSR 60 (81)
T ss_pred hHHHHHHHHHHHHHHHHHhcc-------c-----c-------cHHHHHHHHHHHHHhhCChHHHHHH-HHHHHHHHHhc
Confidence 567788888888887776541 0 0 1235668999999999999999999 99999866 54
No 130
>PLN02486 aminoacyl-tRNA ligase
Probab=92.96 E-value=0.64 Score=47.23 Aligned_cols=76 Identities=17% Similarity=0.094 Sum_probs=48.0
Q ss_pred CCcceEEEeCCCCCC-cCCcccchhHHHHHHHHHHHHHC-CCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHH
Q 012397 37 RGKVGMYVCGVTAYD-LSHLGHARAAVSFDLLYRYLEHL-KCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYL 114 (464)
Q Consensus 37 ~~~~~v~~~~P~p~G-~lHiGHar~~l~~D~laR~lr~~-G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~ 114 (464)
.|+...+.||--|+| .+||||+-++ ..+. ++... |..+. +.-+|+ .+....+.++++. .++..+..
T Consensus 70 ~~~~~~vYtG~~PSg~~lHlGHlv~~---~~~~-~lQ~~~~~~~~-I~iaD~------e~~~~~~~~~e~i-~~~~~en~ 137 (383)
T PLN02486 70 KGEKFYLYTGRGPSSEALHLGHLIPF---MFTK-YLQDAFKVPLV-IQLTDD------EKFLWKNLSVEES-QRLARENA 137 (383)
T ss_pred cCCCeEEEeCCCCCCccccHHHHHHH---HHHH-HHHHhCCCeEE-EEecCH------HHHhhcCCCHHHH-HHHHHHHH
Confidence 466677889999998 5999994443 4444 55554 55444 445564 2222234565444 45666788
Q ss_pred HHHHhcCCCC
Q 012397 115 VDMADLQCLP 124 (464)
Q Consensus 115 ~~l~~lgi~~ 124 (464)
+++..+|+.+
T Consensus 138 ~~iiA~G~dp 147 (383)
T PLN02486 138 KDIIACGFDV 147 (383)
T ss_pred HHHHHhCCCC
Confidence 8888899874
No 131
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=92.48 E-value=0.081 Score=52.74 Aligned_cols=82 Identities=17% Similarity=0.180 Sum_probs=46.2
Q ss_pred eEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q 012397 41 GMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADL 120 (464)
Q Consensus 41 ~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l 120 (464)
.++.+|.-|+|.+||||.-.++-- ..+.+...|.++++. -.|.|.. +. ..+++++ +++......++-..
T Consensus 4 ~~v~sGiqPTG~~HLGnylga~k~--~~~lq~~~~~~~~~~-IADlHal---t~----~~~~~~l-~~~~~~~~~~~lA~ 72 (332)
T PRK12556 4 KIMLTGIKPTGYPHLGNYIGAIKP--ALQMAKNYEGKALYF-IADYHAL---NA----VHDPEQF-RSYTREVAATWLSL 72 (332)
T ss_pred CEEEEEECCCCcchHHHHHHHHHH--HHHHHHhcCCeEEEE-Eechhhc---cC----CCCHHHH-HHHHHHHHHHHhhe
Confidence 366788999999999995444321 223344456555433 3443331 10 1255554 34555677788899
Q ss_pred CCCCC-CCCCCcch
Q 012397 121 QCLPP-TYQPRVSD 133 (464)
Q Consensus 121 gi~~~-~~~~r~s~ 133 (464)
|+.+. ..+...|+
T Consensus 73 GlDP~k~~if~qS~ 86 (332)
T PRK12556 73 GLDPEDVIFYRQSD 86 (332)
T ss_pred eecccceEEEECCC
Confidence 99752 13344444
No 132
>COG1656 Uncharacterized conserved protein [Function unknown]
Probab=92.29 E-value=0.23 Score=43.59 Aligned_cols=88 Identities=22% Similarity=0.235 Sum_probs=48.4
Q ss_pred HHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchhHHHHHHHHHHHH
Q 012397 67 LYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQII 146 (464)
Q Consensus 67 laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~~~~~~r~s~~~~~~~~~~~~L~ 146 (464)
|||+||+.|+++.|.+..+ +..++.-+..+|.=. ...=.+.+... .+|+. ..+.++....+.+.+++.++-
T Consensus 18 LARwLRllGydt~~~~~~~--d~~i~~i~~~e~rIl---lTRDr~L~~r~--k~g~~--~i~i~~~s~~~Ql~e~~~~~~ 88 (165)
T COG1656 18 LARWLRLLGYDTVYSSNES--DDEIILIAKKEGRIL---LTRDRELYKRA--KLGIK--AILIRSDSIEEQLAEFLARLG 88 (165)
T ss_pred HHHHHHHcCCceeeeccCC--cHHHHHHHhcCCeEE---EeccHHHHHHh--hccCc--eEEEeCCCHHHHHHHHHHHhc
Confidence 8999999999999997322 345555565544200 00001112221 35553 445555555566777777665
Q ss_pred HCCceEeecCcEEEcCCCCCCCCC
Q 012397 147 NNDCAYVVEGDVFFAVEKSPNYGR 170 (464)
Q Consensus 147 ~~G~~y~~~~~~~~~~~~~~~~g~ 170 (464)
.++... .....||.|+.
T Consensus 89 l~~~~~-------~e~~RCp~CN~ 105 (165)
T COG1656 89 LKPRLF-------PEFSRCPECNG 105 (165)
T ss_pred cchhcc-------cccccCcccCC
Confidence 544211 12356888874
No 133
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=91.26 E-value=0.22 Score=43.58 Aligned_cols=31 Identities=35% Similarity=0.607 Sum_probs=24.8
Q ss_pred HHHHHHHCCCeEEEecCCccccHHHHHHHHHcC
Q 012397 67 LYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLG 99 (464)
Q Consensus 67 laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g 99 (464)
|||+||..|+||.+....+ +..+...|.++|
T Consensus 12 Lar~LR~lG~Dt~~~~~~~--D~~il~~A~~e~ 42 (147)
T PF01927_consen 12 LARWLRLLGYDTLYSRDID--DDEILELAREEG 42 (147)
T ss_pred HHHHHHHCCCcEEEeCCCC--hHHHHHHhhhCC
Confidence 8999999999999999664 345677777665
No 134
>PRK01233 glyS glycyl-tRNA synthetase subunit beta; Validated
Probab=90.92 E-value=1.2 Score=48.75 Aligned_cols=101 Identities=6% Similarity=0.012 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHhcCccccC---CC-----ccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhh
Q 012397 332 VFYIYQTLQDCEVALSPFQEH---GK-----TARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLN 403 (464)
Q Consensus 332 l~~l~~~~~~~~~~l~~~~~~---~~-----~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~ 403 (464)
...+..+++|+..++++.... .. .++.|+.|...+.++...+..++ ..-++..++.. |.++...++.||+
T Consensus 568 ~~~l~~~~kRv~NIl~k~~~~~~~~v~~~l~~~~~E~~L~~~~~~~~~~~~~~~-~~~~y~~~l~~-l~~L~~~Id~FFD 645 (682)
T PRK01233 568 FKALAAANKRVSNILKKAEGKVSGEVDPALFEEPAEKALYAALEELKPKVEPAL-AAGDYQAALEA-LAALRPPVDAFFD 645 (682)
T ss_pred HHHHHHHHHHHHHHHhccccccCCccChhHcCCHHHHHHHHHHHHHHHHHHHHh-hhccHHHHHHH-HHhhhhHHHHHhC
Confidence 557888889998888765321 11 25677888888888888888888 67788999999 9999999999999
Q ss_pred hhcccCc-hhhhhhHHHHHHHHHHHHHHHHHh
Q 012397 404 MLKKKQP-KQQQLSLIESLRKIENEVKEVLRI 434 (464)
Q Consensus 404 ~~~~~~~-~~~~~~r~~~~~~~~~~l~~~l~l 434 (464)
...+..+ .+....|+.++..+...+..+..+
T Consensus 646 ~VmVm~~d~~iR~NRL~LL~~i~~~f~~iaDf 677 (682)
T PRK01233 646 NVMVMAEDEALRANRLALLASLRELFLRVADF 677 (682)
T ss_pred CCeeeCCCHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 8887654 445678999988888877665543
No 135
>COG0751 GlyS Glycyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis]
Probab=90.25 E-value=1.8 Score=46.67 Aligned_cols=101 Identities=8% Similarity=0.053 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHhcCcccc---CCC-----ccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhh
Q 012397 332 VFYIYQTLQDCEVALSPFQE---HGK-----TARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLN 403 (464)
Q Consensus 332 l~~l~~~~~~~~~~l~~~~~---~~~-----~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~ 403 (464)
...+..++.|+..++.+..+ ..+ ..+.|+.|...+..+...+.+++ ..-++..++.. |.++..-+..||+
T Consensus 577 ~~~l~~a~kRv~nIl~k~~~~~~~~v~~~Lf~~~~E~~L~~a~~~~~~~~~~a~-a~~~y~~al~~-L~~L~~pId~FFd 654 (691)
T COG0751 577 AKALAAANKRVSNILAKAEKKLSGTVDPSLFEEDAEKALFEALQALKPKVAEAL-AEKDYQDALAA-LAELRPPIDEFFD 654 (691)
T ss_pred hHHHHHHHHHHHHHHHhcccccCCccChHHhcCHHHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHH-HHHhhhhHHHHhc
Confidence 44666788888888876653 111 25677889999999999999999 67788999999 9999999999999
Q ss_pred hhcccCc-hhhhhhHHHHHHHHHHHHHHHHHh
Q 012397 404 MLKKKQP-KQQQLSLIESLRKIENEVKEVLRI 434 (464)
Q Consensus 404 ~~~~~~~-~~~~~~r~~~~~~~~~~l~~~l~l 434 (464)
...+..+ .+.+..|++++..+...+..+..+
T Consensus 655 ~VmVm~eD~~iR~NRLalL~~l~~~f~~vAd~ 686 (691)
T COG0751 655 NVMVMAEDEALRNNRLALLSKLRELFLKVADF 686 (691)
T ss_pred CceeeCCCHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 9877653 345678999888888777665443
No 136
>TIGR00211 glyS glycyl-tRNA synthetase, tetrameric type, beta subunit. The glycyl-tRNA synthetases differ even among the eubacteria in oligomeric structure. In Escherichia coli and most others, it is a heterodimer of two alpha chains and two beta chains, encoded by tandem genes. The genes are similar, but fused, in Chlamydia trachomatis. By contrast, the glycyl-tRNA synthetases of Thermus thermophilus and of archaea and eukaryotes differ considerably; they are homodimeric, mutually similar, and not detected by this model.
Probab=90.07 E-value=1.4 Score=48.20 Aligned_cols=100 Identities=6% Similarity=-0.031 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHhcCccccC---CC-----ccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhh
Q 012397 332 VFYIYQTLQDCEVALSPFQEH---GK-----TARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLN 403 (464)
Q Consensus 332 l~~l~~~~~~~~~~l~~~~~~---~~-----~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~ 403 (464)
...+..+++|+..++.+.... .. ..+.|+.|...+..+...+...+ ..-++..++.. |..+...++.||+
T Consensus 578 ~~~l~~a~kRv~NIl~k~~~~~~~~v~~~l~~~~~E~~L~~~~~~~~~~~~~~~-~~~~y~~~l~~-l~~L~~~Id~FFD 655 (691)
T TIGR00211 578 AEALAAANKRVANILKKGNPVLSSEIQANLFKEPKEKALFEAVLAIKMNAQESF-ESGDYETALEA-LAELRAPVDEFFD 655 (691)
T ss_pred HHHHHHHHHHHHHHHhcccccccCccChhHcCCHHHHHHHHHHHHHHHHHHHHh-hhccHHHHHHH-HHHhhhHHHHHhC
Confidence 557888889998888775321 11 14567788888888777777777 56688899999 9999999999999
Q ss_pred hhcccCc-hhhhhhHHHHHHHHHHHHHHHHH
Q 012397 404 MLKKKQP-KQQQLSLIESLRKIENEVKEVLR 433 (464)
Q Consensus 404 ~~~~~~~-~~~~~~r~~~~~~~~~~l~~~l~ 433 (464)
...+..+ .+....|++++..+...+..+..
T Consensus 656 ~VmVm~~d~~iR~NRL~LL~~i~~lf~~iaD 686 (691)
T TIGR00211 656 SVMVMADDIELRQNRLNFLWGLRQLFLEVAD 686 (691)
T ss_pred CCEeeCCCHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9888654 44567899998888887766544
No 137
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=89.60 E-value=0.62 Score=46.53 Aligned_cols=71 Identities=18% Similarity=0.140 Sum_probs=44.2
Q ss_pred EEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q 012397 42 MYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQ 121 (464)
Q Consensus 42 v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lg 121 (464)
++.+|--|+|.+||||.-.++. -.+.+...|. + ++.-.|.|.. .. ...+++++. ++..+...++..+|
T Consensus 4 ~v~sG~~PTG~~HLGn~l~~~~---~~~~lQ~~~~-~-~i~IaD~ha~--~~----~~~~~~~i~-~~~~~~~~~~lA~G 71 (333)
T PRK12282 4 IILTGDRPTGKLHLGHYVGSLK---NRVALQNEHE-Q-FVLIADQQAL--TD----NAKNPEKIR-RNILEVALDYLAVG 71 (333)
T ss_pred EEEEeeCCCCcchHHHHHHHHH---HHHHHHhCCC-E-EEEEccchhH--hC----CCCCHHHHH-HHHHHHHHHHHHhC
Confidence 5678889999999999655432 2225555675 4 4555776632 11 123554444 45556777788899
Q ss_pred CCC
Q 012397 122 CLP 124 (464)
Q Consensus 122 i~~ 124 (464)
+.+
T Consensus 72 ~dp 74 (333)
T PRK12282 72 IDP 74 (333)
T ss_pred cCh
Confidence 874
No 138
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=88.94 E-value=0.38 Score=49.29 Aligned_cols=80 Identities=16% Similarity=0.056 Sum_probs=45.8
Q ss_pred EEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q 012397 42 MYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQ 121 (464)
Q Consensus 42 v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lg 121 (464)
.+.+|..|+|.|||||.-.++.- ..+.+...|+++++. -.|-|-. . ...+|+++.+. ..++..++-..|
T Consensus 4 rvlSGiqPTG~lHLGNylGaik~--~v~lq~q~~~~~~~~-IADlHAl---T----~~~dp~~lr~~-~~e~aa~~LA~G 72 (431)
T PRK12284 4 RVLTGITTTGTPHLGNYAGAIRP--AIAASRQPGVESFYF-LADYHAL---I----KCDDPARIQRS-TLEIAATWLAAG 72 (431)
T ss_pred EEEEEecCCCcchHHHHHHHHHH--HHHHHHhCCCcEEEE-eechhhc---c----CCCCHHHHHHH-HHHHHHHHHHhC
Confidence 46788999999999995454321 223334458886543 3333321 1 02345544443 344777888899
Q ss_pred CCCCC-CCCCcc
Q 012397 122 CLPPT-YQPRVS 132 (464)
Q Consensus 122 i~~~~-~~~r~s 132 (464)
+.+.- .+.+.|
T Consensus 73 lDPek~~if~QS 84 (431)
T PRK12284 73 LDPERVTFYRQS 84 (431)
T ss_pred CCccceEEEECC
Confidence 98421 344444
No 139
>PRK14908 glycyl-tRNA synthetase; Provisional
Probab=86.30 E-value=4.2 Score=46.08 Aligned_cols=99 Identities=10% Similarity=0.072 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHhcCccccCCC-----ccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhc
Q 012397 332 VFYIYQTLQDCEVALSPFQEHGK-----TARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLK 406 (464)
Q Consensus 332 l~~l~~~~~~~~~~l~~~~~~~~-----~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~~ 406 (464)
...+..+++|+..++.+...... ..+.|+.|.+.+.++...+... +-++..++.. |.++...++.||+...
T Consensus 893 ~~~l~~a~kRv~NIl~k~~~~~vd~~Lf~~~~E~~L~~a~~~~~~~~~~~---~~dy~~al~~-La~L~~~Id~FFD~Vm 968 (1000)
T PRK14908 893 FAEIAAALNRLKRILASLSFSVTDASLLLEPAELNLKQALDAFREELTEL---PIDLKDYVAA-AAELPQAVNTFFDEVL 968 (1000)
T ss_pred HHHHHHHHHHHHHHHhhcCCCccChhhcCCHHHHHHHHHHHHHHHHHHHh---hhhHHHHHHH-HHhhhhHHHHHhCCCE
Confidence 55788888999888877542111 2455667776666665555544 2267789999 9999999999999988
Q ss_pred ccCc-hhhhhhHHHHHHHHHHHHHHHHHh
Q 012397 407 KKQP-KQQQLSLIESLRKIENEVKEVLRI 434 (464)
Q Consensus 407 ~~~~-~~~~~~r~~~~~~~~~~l~~~l~l 434 (464)
+..+ .+.+..|+.++..+...+..+..+
T Consensus 969 Vm~eD~~iR~NRLaLL~~i~~lf~~vaDf 997 (1000)
T PRK14908 969 VMADDEAIRNARLGLLAAIRDLKFGVLDW 997 (1000)
T ss_pred eeCCCHHHHHHHHHHHHHHHHHHHhhcch
Confidence 8654 445678999988888877665443
No 140
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=84.30 E-value=0.52 Score=47.09 Aligned_cols=70 Identities=14% Similarity=0.097 Sum_probs=40.5
Q ss_pred EEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q 012397 42 MYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQ 121 (464)
Q Consensus 42 v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lg 121 (464)
.+.+|--|+|.+||||.-..+. -+.++++ ++++.+.- .|.|.. + . ..++++ ...+...+..++-.+|
T Consensus 3 ~v~~G~~PTG~lHLG~~~g~~~--~~~~lQ~--~~~~~~~I-aD~ha~-t--~----~~~~~~-i~~~~~~~~~~~lA~G 69 (333)
T PRK00927 3 RVLSGIQPTGKLHLGNYLGAIK--NWVELQD--EYECFFCI-ADLHAL-T--V----PQDPEE-LRENTRELAADYLACG 69 (333)
T ss_pred EEEEeeCCCccchHHhHHHHHH--HHHHHHh--cCCeEEEE-ecHHHH-h--C----CCCHHH-HHHHHHHHHHHHHeEc
Confidence 4567888999999999655542 2344443 36665443 232221 1 0 123333 3345566778888889
Q ss_pred CCC
Q 012397 122 CLP 124 (464)
Q Consensus 122 i~~ 124 (464)
+.+
T Consensus 70 lDp 72 (333)
T PRK00927 70 IDP 72 (333)
T ss_pred cCh
Confidence 874
No 141
>PLN02486 aminoacyl-tRNA ligase
Probab=82.36 E-value=0.9 Score=46.16 Aligned_cols=64 Identities=16% Similarity=0.111 Sum_probs=36.9
Q ss_pred eEEEecccCccccchHHHHHHhh--ccCCCCccEEEEeeeee-eCC--cccccccCC-ccCHHHHHHhcCchhHHHHHhh
Q 012397 238 DIHGGGIDLIFPHHENEIAQSCA--ACQDSNVSYWMHNGHVT-NNN--EKMSKSLGN-FFTIRQITERYHPLALRHFLIS 311 (464)
Q Consensus 238 ~i~~~G~D~~~~h~~~~~a~~~a--~~~~~~~~~~~~~~~v~-~~G--~KmSks~gn-~i~~~dll~~~~~dalR~~ll~ 311 (464)
.+...|.|+- +|.. .++-.| .+...|. .+|+.++. +.| +|||||.+| .|.+.| +++.++=-+.+
T Consensus 221 ~lVPvG~DQd-~~~~--ltRdia~r~~~~kp~--~~~~~~lp~L~g~~~KMSkS~~nsaI~L~D-----~p~~i~~KI~k 290 (383)
T PLN02486 221 CLIPCAIDQD-PYFR--MTRDVAPRLGYYKPA--LIESRFFPALQGESGKMSASDPNSAIYVTD-----TPKEIKNKINK 290 (383)
T ss_pred ceeecccchH-HHHH--HHHHHHHHhCCCCcc--eeccccccCCCCCCCcCcCcCCCCeeeccC-----CHHHHHHHHhc
Confidence 5667788853 2332 333333 2333333 24445554 355 699999988 688877 66666655544
No 142
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=80.19 E-value=0.59 Score=47.43 Aligned_cols=70 Identities=14% Similarity=0.151 Sum_probs=43.9
Q ss_pred EEEeCCCCCCcCCcccchhHHHHHHHHHHHHH-CCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q 012397 42 MYVCGVTAYDLSHLGHARAAVSFDLLYRYLEH-LKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADL 120 (464)
Q Consensus 42 v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~-~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l 120 (464)
.+.+|.-|+|.+||||.-.++ ..|..+ .|+++ +++-.|.|-.-. ...++.++ ..+...+...+-.+
T Consensus 4 ~v~sGiqPSG~~HLGnylG~i-----k~wv~lq~~~~~-~~~IADlHAlt~------~~~d~~~i-r~~~~~~~a~~lA~ 70 (398)
T PRK12283 4 RVLSGMRPTGRLHLGHYHGVL-----KNWVKLQHEYEC-FFFVADWHALTT------HYETPEVI-EKNVWDMVIDWLAA 70 (398)
T ss_pred EEEEEeCCCCcchHHHHHHHH-----HHHHHHhcCCcE-EEEeecHHHHhC------CCCCHHHH-HHHHHHHHHHHHHc
Confidence 577889999999999965553 344443 56665 455555443211 11244433 34556688889999
Q ss_pred CCCC
Q 012397 121 QCLP 124 (464)
Q Consensus 121 gi~~ 124 (464)
|+.+
T Consensus 71 GlDP 74 (398)
T PRK12283 71 GVDP 74 (398)
T ss_pred CCCc
Confidence 9974
No 143
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=76.10 E-value=5.9 Score=39.59 Aligned_cols=57 Identities=23% Similarity=0.183 Sum_probs=30.9
Q ss_pred CeeEEEecccCccccchHHHHHHhhc--c---CCC----CccEEEEeeeee-eCC-cccccccCCccCHHH
Q 012397 236 KFDIHGGGIDLIFPHHENEIAQSCAA--C---QDS----NVSYWMHNGHVT-NNN-EKMSKSLGNFFTIRQ 295 (464)
Q Consensus 236 ~~~i~~~G~D~~~~h~~~~~a~~~a~--~---~~~----~~~~~~~~~~v~-~~G-~KmSks~gn~i~~~d 295 (464)
..++.++|.|+... + ..++-.|- + +.+ |..+..++.++. ++| +|||||.+|.|.+.|
T Consensus 142 ~~d~vpvG~DQ~~h-~--~laRdiA~~~n~~~~~~~~~~p~~~~~~~~~i~~L~g~~KMSKS~~~~I~L~D 209 (333)
T PRK12282 142 KATLVPVGDDQLPM-I--EQTREIVRRFNSLYGTDVLVEPEALLPEAGRLPGLDGKAKMSKSLGNAIYLSD 209 (333)
T ss_pred CCCEEEeccccHHH-H--HHHHHHHHHHhhhcCCccccCchhcccCCCcccCCCCCCcCCCCCCCeeeeeC
Confidence 57899999997532 2 22333221 1 111 111111122332 366 799999999987655
No 144
>KOG2145 consensus Cytoplasmic tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=75.68 E-value=3.6 Score=39.56 Aligned_cols=45 Identities=27% Similarity=0.407 Sum_probs=33.3
Q ss_pred CCcceEEEeCCCCC-CcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCcc
Q 012397 37 RGKVGMYVCGVTAY-DLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTD 86 (464)
Q Consensus 37 ~~~~~v~~~~P~p~-G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd 86 (464)
.|++.+..||-.|+ +.|||||+-+++ +..||... ++|-.+-++.|
T Consensus 82 q~kpFyLYTGRGpSS~smHlGHliPFi----ftKwlQe~-F~vpLVIqlTD 127 (397)
T KOG2145|consen 82 QGKPFYLYTGRGPSSESMHLGHLIPFI----FTKWLQDV-FDVPLVIQLTD 127 (397)
T ss_pred cCCceEEEeCCCCCccccccccchhHH----HHHHHHHH-hCCceEEEecc
Confidence 58889999998888 999999999997 56666542 45554444443
No 145
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=73.69 E-value=3.5 Score=42.36 Aligned_cols=57 Identities=23% Similarity=0.137 Sum_probs=31.8
Q ss_pred CCeeEEEecccCccccchHHHHHHhhc--c----C---CCCccEEEE--eeeee-eCCcccccccCCccCHHH
Q 012397 235 SKFDIHGGGIDLIFPHHENEIAQSCAA--C----Q---DSNVSYWMH--NGHVT-NNNEKMSKSLGNFFTIRQ 295 (464)
Q Consensus 235 ~~~~i~~~G~D~~~~h~~~~~a~~~a~--~----~---~~~~~~~~~--~~~v~-~~G~KmSks~gn~i~~~d 295 (464)
...++.+.|.|+. .|.. .++-.|- + . ..|... +. ...+. ++|+|||||.+|.|.+.|
T Consensus 147 y~ad~VPVG~DQ~-qHlE--LaRdIA~rFN~~yg~~~F~~Pe~~-i~~~~~~I~gLdg~KMSKS~~n~I~L~D 215 (431)
T PRK12284 147 FNAHKVPVGRDQI-QHIE--MARDIAQRFNHLYGGEFFVLPEAV-IEESVATLPGLDGRKMSKSYDNTIPLFA 215 (431)
T ss_pred cCCCEEEEcchhH-HHHH--HHHHHHHHHhhhcCCcccCCCccc-cccccccccCCCCccccCCCCCEeeecC
Confidence 3578999999975 2332 2333321 1 1 122222 21 12232 389999999999985543
No 146
>PLN02886 aminoacyl-tRNA ligase
Probab=70.55 E-value=8.1 Score=39.34 Aligned_cols=70 Identities=16% Similarity=0.048 Sum_probs=43.8
Q ss_pred EEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q 012397 42 MYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQ 121 (464)
Q Consensus 42 v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lg 121 (464)
++.+|.-|+|.+||||.-.++ .-+.+++ .|++++ +.-.|.|-.. .+.+++++. ++...+..++-.+|
T Consensus 48 ~v~sGiqPSG~lHLGnylGai--~~~v~lQ--~~~~~~-~~IADlHAlt-------~~~~~~~lr-~~~~~~~a~~lA~G 114 (389)
T PLN02886 48 RVVSGVQPTGSIHLGNYLGAI--KNWVALQ--ETYDTF-FCVVDLHAIT-------LPHDPRELG-KATRSTAAIYLACG 114 (389)
T ss_pred eEEEEECCCCccHHHHHHHHH--HHHHHHh--ccCCEE-EEEecHHHhh-------CCCCHHHHH-HHHHHHHHHHHHcC
Confidence 578889999999999955443 2233333 377764 5555544421 122555444 34556778888999
Q ss_pred CCC
Q 012397 122 CLP 124 (464)
Q Consensus 122 i~~ 124 (464)
+.+
T Consensus 115 lDP 117 (389)
T PLN02886 115 IDP 117 (389)
T ss_pred cCc
Confidence 984
No 147
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=68.24 E-value=14 Score=37.70 Aligned_cols=32 Identities=28% Similarity=0.450 Sum_probs=22.2
Q ss_pred eee-eCCcccccccCCccCHHHHHHhcCchhHHHHHhh
Q 012397 275 HVT-NNNEKMSKSLGNFFTIRQITERYHPLALRHFLIS 311 (464)
Q Consensus 275 ~v~-~~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~ 311 (464)
++. ++|+|||||.+|.|.+.| +++.++=-+.+
T Consensus 256 ~I~gLdg~KMSKS~~n~I~L~D-----s~~~I~kKI~~ 288 (398)
T PRK12283 256 KMPGLDGQKMSKSYGNTIGLRE-----DPESVTKKIRT 288 (398)
T ss_pred cccCCCCCcCCCCCCCeeeCcC-----CHHHHHHHHHh
Confidence 443 388999999999987655 55555544444
No 148
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=66.23 E-value=6.3 Score=39.38 Aligned_cols=56 Identities=27% Similarity=0.184 Sum_probs=31.2
Q ss_pred CeeEEEecccCccccchHHHHHHhhc--c---C---CCCccEEE-Eeeeee-eCCcccccccCCccCHH
Q 012397 236 KFDIHGGGIDLIFPHHENEIAQSCAA--C---Q---DSNVSYWM-HNGHVT-NNNEKMSKSLGNFFTIR 294 (464)
Q Consensus 236 ~~~i~~~G~D~~~~h~~~~~a~~~a~--~---~---~~~~~~~~-~~~~v~-~~G~KmSks~gn~i~~~ 294 (464)
..++.+.|.|+.. |+. .++-.|- + + +.|..+.. ++.++. ++|+|||||.+|.|.+.
T Consensus 149 ~~d~VpvG~DQ~q-hle--LtRdiA~rfn~~yg~~f~~P~~~~~~~~~~l~gLdg~KMSKS~~n~I~L~ 214 (332)
T PRK12556 149 QATHVPVGKDQIQ-HIE--IARDIATYFNHTFGDTFTLPEYVIQEEGAILPGLDGRKMSKSYGNVIPLF 214 (332)
T ss_pred cCCEEEeccccHH-HHH--HHHHHHHHHHHhccccCCCceeccccccccccCCCCCCCCCCCCCccccc
Confidence 5789999999752 332 2332221 1 1 22222210 233333 48899999999988543
No 149
>KOG2623 consensus Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=58.16 E-value=13 Score=37.37 Aligned_cols=39 Identities=15% Similarity=0.245 Sum_probs=26.9
Q ss_pred eEEEeCCCCC-CcCCcccchhHHHHHHHHHHHHHCCCeEEEecC
Q 012397 41 GMYVCGVTAY-DLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRN 83 (464)
Q Consensus 41 ~v~~~~P~p~-G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~ 83 (464)
..+.||--|+ -.|||||+-..+ .|.+++ .+|+++.-+-|
T Consensus 64 ~~vYcGfDPTA~SLHvGNLl~lm---~L~hfq-r~Gh~~ialIG 103 (467)
T KOG2623|consen 64 QYVYCGFDPTAESLHVGNLLALM---VLIHFQ-RAGHRPIALIG 103 (467)
T ss_pred ceEEecCCCcHHhhhhcchHHHH---HHHHHH-HcCCCceEEec
Confidence 4456777777 899999976554 255554 47998885543
No 150
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=55.29 E-value=11 Score=37.71 Aligned_cols=68 Identities=22% Similarity=0.143 Sum_probs=37.0
Q ss_pred CeeEEEecccCccccchHHHHHHhhc--c---C---CCCccEEEEe-eeee-eCCc--ccccccC---CccCHHHHHHhc
Q 012397 236 KFDIHGGGIDLIFPHHENEIAQSCAA--C---Q---DSNVSYWMHN-GHVT-NNNE--KMSKSLG---NFFTIRQITERY 300 (464)
Q Consensus 236 ~~~i~~~G~D~~~~h~~~~~a~~~a~--~---~---~~~~~~~~~~-~~v~-~~G~--KmSks~g---n~i~~~dll~~~ 300 (464)
..++.++|.|+.. |+. .++-.|- + + ..|..++..+ ..+. ++|. |||||.+ |.|.+.|
T Consensus 138 ~~divpvG~DQ~~-h~e--laRdia~~~n~~~~~~f~~P~~i~~~~~~~l~gL~g~~~KMSKS~~~~~~~I~l~D----- 209 (333)
T PRK00927 138 KADLVPVGEDQKQ-HLE--LTRDIARRFNNLYGEVFPVPEPLIPKVGARVMGLDGPTKKMSKSDPNDNNTINLLD----- 209 (333)
T ss_pred CCCEEeeccchHH-HHH--HHHHHHHHhhhhccccCCCChhhhccccccccCCCCCCCCCCCCCCCCCCeEEeeC-----
Confidence 5789999999753 332 3333332 1 1 2333332111 2232 3665 9999999 7887655
Q ss_pred CchhHHHHHhh
Q 012397 301 HPLALRHFLIS 311 (464)
Q Consensus 301 ~~dalR~~ll~ 311 (464)
+++.++=-+.+
T Consensus 210 ~~~~I~~KI~~ 220 (333)
T PRK00927 210 DPKTIAKKIKK 220 (333)
T ss_pred CHHHHHHHHHh
Confidence 45555444443
No 151
>KOG2144 consensus Tyrosyl-tRNA synthetase, cytoplasmic [Translation, ribosomal structure and biogenesis]
Probab=55.02 E-value=5.2 Score=38.51 Aligned_cols=70 Identities=17% Similarity=0.116 Sum_probs=38.9
Q ss_pred EEEeCCCCCCcCCcccch-hHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCCh----HHHHHHHHHHHHHH
Q 012397 42 MYVCGVTAYDLSHLGHAR-AAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENP----LSLSNRYCQEYLVD 116 (464)
Q Consensus 42 v~~~~P~p~G~lHiGHar-~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~----~~~~~~~~~~~~~~ 116 (464)
...-|--|+|.+|+|-.- -.=++|+ + ..|.+|...- .|-|+. ...-+.| +-.+..|...+...
T Consensus 36 ~~YwGtaptGrpHiay~vpm~kiadf----l-kAGC~VtIl~-AD~hA~------LdNmkap~e~~~~rv~yYe~~Ik~~ 103 (360)
T KOG2144|consen 36 KCYWGTAPTGRPHIAYFVPMMKIADF----L-KAGCEVTILF-ADLHAF------LDNMKAPDELVIRRVGYYEKEIKAA 103 (360)
T ss_pred eeeecCCCCCCcceeeeeehhHHHHH----H-hcCCeEEEEe-hHHHHH------HhcccchHHHHHHHHHHHHHHHHHH
Confidence 344456688999999954 3334554 3 4788887432 121210 0000112 22345577778888
Q ss_pred HHhcCCC
Q 012397 117 MADLQCL 123 (464)
Q Consensus 117 l~~lgi~ 123 (464)
+..+|+.
T Consensus 104 l~~~nv~ 110 (360)
T KOG2144|consen 104 LGSINVP 110 (360)
T ss_pred HhhcCCc
Confidence 8888875
No 152
>PLN02886 aminoacyl-tRNA ligase
Probab=51.07 E-value=13 Score=37.94 Aligned_cols=17 Identities=24% Similarity=0.088 Sum_probs=12.0
Q ss_pred hhcCCCeeEEEecccCc
Q 012397 231 HYLSSKFDIHGGGIDLI 247 (464)
Q Consensus 231 ~~~~~~~~i~~~G~D~~ 247 (464)
..+-...++.+.|.|+.
T Consensus 179 DILl~~a~~VPVG~DQ~ 195 (389)
T PLN02886 179 DILLYQADLVPVGEDQK 195 (389)
T ss_pred hhhhcCCCeEEEccchH
Confidence 33334578999999975
No 153
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=48.63 E-value=35 Score=29.53 Aligned_cols=82 Identities=15% Similarity=0.180 Sum_probs=52.1
Q ss_pred CcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 012397 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDM 117 (464)
Q Consensus 38 ~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l 117 (464)
.+++|.+-.+- ==||-|. +.+++|.|+..|++|.+.-... +|++.++ ....++-
T Consensus 11 ~rprvlvak~G-----lDgHd~g---akvia~~l~d~GfeVi~~g~~~---------------tp~e~v~---aA~~~dv 64 (143)
T COG2185 11 ARPRVLVAKLG-----LDGHDRG---AKVIARALADAGFEVINLGLFQ---------------TPEEAVR---AAVEEDV 64 (143)
T ss_pred CCceEEEeccC-----ccccccc---hHHHHHHHHhCCceEEecCCcC---------------CHHHHHH---HHHhcCC
Confidence 56677776543 2367553 3569999999999999765543 2322222 2234444
Q ss_pred HhcCCCCCCCCCCcchhHHHHHHHHHHHHHCCc
Q 012397 118 ADLQCLPPTYQPRVSDHMEQIKDMITQIINNDC 150 (464)
Q Consensus 118 ~~lgi~~~~~~~r~s~~~~~~~~~~~~L~~~G~ 150 (464)
.-++++. ..-.|...+.++++.|.++|.
T Consensus 65 ~vIgvSs-----l~g~h~~l~~~lve~lre~G~ 92 (143)
T COG2185 65 DVIGVSS-----LDGGHLTLVPGLVEALREAGV 92 (143)
T ss_pred CEEEEEe-----ccchHHHHHHHHHHHHHHhCC
Confidence 4455552 112578888999999999887
No 154
>KOG2713 consensus Mitochondrial tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=48.21 E-value=28 Score=33.62 Aligned_cols=76 Identities=12% Similarity=0.088 Sum_probs=41.8
Q ss_pred ceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q 012397 40 VGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMAD 119 (464)
Q Consensus 40 ~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 119 (464)
...+++|.-|+|.+|+||-..++--.+=---....|..|.| +-+|-|.-. .+.+|..+ ++..-.....+-.
T Consensus 13 ~~rvfSGIQPTG~~HLGNYLGai~~Wv~LQ~~~d~~~~~~f-~vvDlHaIT-------vp~dp~~l-rq~~~dm~A~lLA 83 (347)
T KOG2713|consen 13 PKRVFSGIQPTGIPHLGNYLGAIKPWVQLQNEYDKNILVLF-SVVDLHAIT-------VPQDPAEL-RQATHDMAASLLA 83 (347)
T ss_pred cceeEeccCCCCCchhhhhhhhhhHHHHHHHHhcCCceEEE-EEeeceeec-------CCCChHHH-HHHHHHHHHHHHH
Confidence 46788999999999999976665544422222233443433 334444321 23344422 2334445555666
Q ss_pred cCCCC
Q 012397 120 LQCLP 124 (464)
Q Consensus 120 lgi~~ 124 (464)
-||.+
T Consensus 84 cGIdp 88 (347)
T KOG2713|consen 84 CGIDP 88 (347)
T ss_pred hccCc
Confidence 78874
No 155
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=46.79 E-value=16 Score=30.68 Aligned_cols=28 Identities=25% Similarity=0.169 Sum_probs=22.1
Q ss_pred cccchhHHHHHHHHHHHHHCCCeEEEecCCc
Q 012397 55 LGHARAAVSFDLLYRYLEHLKCEVTYVRNFT 85 (464)
Q Consensus 55 iGHar~~l~~D~laR~lr~~G~~V~~i~~~d 85 (464)
-||+.+++ .+++.|+.+||+|.+...-+
T Consensus 9 ~Ghv~P~l---ala~~L~~rGh~V~~~~~~~ 36 (139)
T PF03033_consen 9 RGHVYPFL---ALARALRRRGHEVRLATPPD 36 (139)
T ss_dssp HHHHHHHH---HHHHHHHHTT-EEEEEETGG
T ss_pred hhHHHHHH---HHHHHHhccCCeEEEeeccc
Confidence 58888887 69999999999999666543
No 156
>PF10009 DUF2252: Uncharacterized protein conserved in bacteria (DUF2252); InterPro: IPR018721 This domain has no known function.
Probab=43.68 E-value=93 Score=31.78 Aligned_cols=89 Identities=13% Similarity=0.150 Sum_probs=54.8
Q ss_pred CcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccc------------cHHHHHHHHHcCCC---hHHHHHHHHHHHHH
Q 012397 51 DLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDV------------DDKIIRRANDLGEN---PLSLSNRYCQEYLV 115 (464)
Q Consensus 51 G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~------------g~~i~~~a~~~g~~---~~~~~~~~~~~~~~ 115 (464)
|.+|++|.+.+- -..|.-|+=+|-.||- ..++...+++.|.+ ....++.+.+.|.+
T Consensus 48 GD~Hl~NFG~~~---------~~~~~~vFdiNDFDEa~~gp~~wDl~Rla~Si~laa~~~gl~~~~~~~~~~~~~~~Y~~ 118 (385)
T PF10009_consen 48 GDAHLENFGAFA---------SPEGRVVFDINDFDEALPGPFEWDLKRLATSIVLAARENGLSDKDARKAVRAFLEGYRE 118 (385)
T ss_pred ccchhhccCccc---------CCCCCEEecCCCCCcCCcCChHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 999999998763 2234444445555543 24677788888876 56788888888988
Q ss_pred HHHhcCCCCC-CCC-CCcchhHHHHHHHHHHHHHC
Q 012397 116 DMADLQCLPP-TYQ-PRVSDHMEQIKDMITQIINN 148 (464)
Q Consensus 116 ~l~~lgi~~~-~~~-~r~s~~~~~~~~~~~~L~~~ 148 (464)
.+..+.-... +.+ .........+.+++.+..++
T Consensus 119 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ka~~r 153 (385)
T PF10009_consen 119 ALADYAGMDPLDVWYFTPDNASGPVRKALKKARKR 153 (385)
T ss_pred HHHHhcCCChhhceecCchhhHHHHHHHHHHHHHh
Confidence 8888654321 111 22223344566666655554
No 157
>KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=41.92 E-value=1.3e+02 Score=29.82 Aligned_cols=62 Identities=19% Similarity=0.323 Sum_probs=43.3
Q ss_pred chhHHHHHHHHHHHHHCCCeEEEec------CCccccHHHHHHHHH-cCCChHHHHHHHHHHHHHHHHhc
Q 012397 58 ARAAVSFDLLYRYLEHLKCEVTYVR------NFTDVDDKIIRRAND-LGENPLSLSNRYCQEYLVDMADL 120 (464)
Q Consensus 58 ar~~l~~D~laR~lr~~G~~V~~i~------~~dd~g~~i~~~a~~-~g~~~~~~~~~~~~~~~~~l~~l 120 (464)
+.--..+|+|.|-++..|.+|.-+. ++-. -.+++.++++ .+..+++..+.|.+.|.+.+.+.
T Consensus 183 ~aVeaf~D~lR~EL~~fGV~VsiiePG~f~T~l~~-~~~~~~~~~~~w~~l~~e~k~~YGedy~~~~~~~ 251 (322)
T KOG1610|consen 183 FAVEAFSDSLRRELRPFGVKVSIIEPGFFKTNLAN-PEKLEKRMKEIWERLPQETKDEYGEDYFEDYKKS 251 (322)
T ss_pred HHHHHHHHHHHHHHHhcCcEEEEeccCccccccCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 3445678999999999999998552 2222 2455555554 46677888888888888777663
No 158
>COG3171 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.65 E-value=33 Score=28.14 Aligned_cols=56 Identities=11% Similarity=0.106 Sum_probs=34.8
Q ss_pred HHHHhcCCCCCCCCCC---cchhHHHHHHHHHHHHHC-CceEeec----CcEEEcCCCCCCCCC
Q 012397 115 VDMADLQCLPPTYQPR---VSDHMEQIKDMITQIINN-DCAYVVE----GDVFFAVEKSPNYGR 170 (464)
Q Consensus 115 ~~l~~lgi~~~~~~~r---~s~~~~~~~~~~~~L~~~-G~~y~~~----~~~~~~~~~~~~~g~ 170 (464)
..++.||.+..-.+.+ +....+.+..++.++++. |++|.+. .+++.|...|+.|++
T Consensus 24 ~EFQeLgF~v~~~~~eg~~ae~~dea~drFidevI~~Ngl~~~G~~~~~~~glvcl~~~g~~~e 87 (119)
T COG3171 24 GEFQELGFSVQWSFHEGTSAEDVDEAVDRFIDEVIAPNGLAFAGSGYLDWEGLVCLQRIGKCDE 87 (119)
T ss_pred HHHHhhheeeEEEecCCccHHHHHHHHHHHHHHHHccCceeEcCCcceeeeeeehHhhcCCccH
Confidence 3456666664222333 224566788888888875 9999763 355666666666654
No 159
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=36.72 E-value=15 Score=29.66 Aligned_cols=15 Identities=27% Similarity=0.379 Sum_probs=11.8
Q ss_pred EeCCCCCCcCCcccch
Q 012397 44 VCGVTAYDLSHLGHAR 59 (464)
Q Consensus 44 ~~~P~p~G~lHiGHar 59 (464)
+.|.++ +++|+||..
T Consensus 3 ~~~G~F-dp~H~GH~~ 17 (105)
T cd02156 3 RFPGEP-GYLHIGHAK 17 (105)
T ss_pred EeCCCC-CCCCHHHHH
Confidence 345667 999999976
No 160
>PF08926 DUF1908: Domain of unknown function (DUF1908); InterPro: IPR015022 This domain is found in microtubule-associated serine/threonine-protein kinases. ; GO: 0000287 magnesium ion binding, 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1V9V_A.
Probab=34.94 E-value=1.3e+02 Score=29.03 Aligned_cols=84 Identities=11% Similarity=0.072 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhcccCchhhhhhHHHHHHHHHHHHHHHHHhhccCCCccHHHHH
Q 012397 368 KLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLLPPGAYSEVK 447 (464)
Q Consensus 368 ~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~l~lLgi~p~~~~e~i~ 447 (464)
++++-....+ .+-.-..+...|.+++...+-+.++..+.-........-..+++.++.++-.-.++|..+-+ ..|+.|
T Consensus 167 QivElARDCL-~KS~~~lITs~YF~ElsEnLekLl~ea~erS~~~~~~~~~~lvrklL~IisRPARLLEcLEF-dPeefy 244 (282)
T PF08926_consen 167 QIVELARDCL-QKSREGLITSRYFYELSENLEKLLQEAHERSESEEVAFVTQLVRKLLIIISRPARLLECLEF-DPEEFY 244 (282)
T ss_dssp HHHHHHHHHH-HHHHTT---HHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHHHHHHHHHHSS-----------------
T ss_pred HHHHHHHHHH-HHHhccCchHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchhhhhhhhcc-ChHHHH
Confidence 3334444444 34344556678899999988888776553221111112223344454454445577775565 888988
Q ss_pred HHhhhh
Q 012397 448 TAFLVL 453 (464)
Q Consensus 448 ~~l~~~ 453 (464)
..|.+.
T Consensus 245 ~lLe~a 250 (282)
T PF08926_consen 245 HLLEAA 250 (282)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 877654
No 161
>PF10264 Stork_head: Winged helix Storkhead-box1 domain; InterPro: IPR019391 In humans the Storkhead-box protein controls polyploidization of extravillus trophoblast and is implicated in pre-eclampsia []. This entry represents the conserved N-terminal winged-helix domain, which is likely to bind DNA.
Probab=33.72 E-value=44 Score=25.85 Aligned_cols=35 Identities=9% Similarity=0.186 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHhhccCCCccHHHHHHHhhhhHhHh
Q 012397 420 SLRKIENEVKEVLRILGLLPPGAYSEVKTAFLVLLHVF 457 (464)
Q Consensus 420 ~~~~~~~~l~~~l~lLgi~p~~~~e~i~~~l~~~~~~~ 457 (464)
.+.++.+.|..... |+.+| ..|.|++.|+.|++.+
T Consensus 31 t~E~l~~~L~~~yp--~i~~P-s~e~l~~~L~~Li~er 65 (80)
T PF10264_consen 31 TQETLREHLRKHYP--GIAIP-SQEVLYNTLGTLIKER 65 (80)
T ss_pred hHHHHHHHHHHhCC--CCCCC-CHHHHHHHHHHHHHcC
Confidence 33455555544333 58889 9999999999999875
No 162
>PF15366 DUF4597: Domain of unknown function (DUF4597)
Probab=32.15 E-value=27 Score=24.64 Aligned_cols=15 Identities=7% Similarity=0.009 Sum_probs=12.8
Q ss_pred cceEEEeCCCCCCcC
Q 012397 39 KVGMYVCGVTAYDLS 53 (464)
Q Consensus 39 ~~~v~~~~P~p~G~l 53 (464)
...|++|+|||+|-.
T Consensus 22 VPnIIiTPPTPTg~~ 36 (62)
T PF15366_consen 22 VPNIIITPPTPTGMM 36 (62)
T ss_pred CCceEecCCCCCcee
Confidence 457999999999876
No 163
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=30.19 E-value=3e+02 Score=23.86 Aligned_cols=41 Identities=10% Similarity=0.082 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhh
Q 012397 361 AAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLN 403 (464)
Q Consensus 361 ~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~ 403 (464)
.+-.++..-..++..|. ..-+.+.|... -.+.+..+|.|.+
T Consensus 99 ~L~~~Lf~~L~~LD~AA-~~kd~~~a~k~-Y~~av~~~dafl~ 139 (142)
T TIGR03042 99 ALAKELKDDLEKLDEAA-RLQDGPQAQKA-YQKAAADFDAYLD 139 (142)
T ss_pred HHHHHHHHHHHHHHHHH-HhcCHHHHHHH-HHHHHHHHHHHHh
Confidence 34455555566677777 66677777666 6777777777765
No 164
>COG3286 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.71 E-value=1.1e+02 Score=27.75 Aligned_cols=27 Identities=26% Similarity=0.142 Sum_probs=23.0
Q ss_pred chhHHHHHHHHHHHHHCCCeEEEecCC
Q 012397 58 ARAAVSFDLLYRYLEHLKCEVTYVRNF 84 (464)
Q Consensus 58 ar~~l~~D~laR~lr~~G~~V~~i~~~ 84 (464)
+++.+.-|+|+..|+.+|+.|..-.+.
T Consensus 85 a~p~Vp~~vl~daLk~~GyrVevr~~~ 111 (204)
T COG3286 85 ASPNVPPDVLIDALKLLGYRVEVRGGE 111 (204)
T ss_pred hcCCCCHHHHHHHHHhCCceEEeeCce
Confidence 456688899999999999999987765
No 165
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=29.69 E-value=90 Score=24.75 Aligned_cols=33 Identities=21% Similarity=0.324 Sum_probs=24.0
Q ss_pred EEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEE
Q 012397 42 MYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVT 79 (464)
Q Consensus 42 v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~ 79 (464)
||++||.. |.+ -.+.-..+-.++.||..|+.|.
T Consensus 1 iYIaGPmt-G~~----~~N~~~f~~~a~~L~~~G~~vv 33 (92)
T PF14359_consen 1 IYIAGPMT-GLP----DYNRPAFNAAAKRLRAKGYEVV 33 (92)
T ss_pred CeEeCCcC-CCc----chHHHHHHHHHHHHHHCCCEEe
Confidence 57888864 444 3344556669999999999988
No 166
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=27.58 E-value=53 Score=31.75 Aligned_cols=41 Identities=27% Similarity=0.242 Sum_probs=27.3
Q ss_pred ccc-chhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCC
Q 012397 55 LGH-ARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGEN 101 (464)
Q Consensus 55 iGH-ar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~ 101 (464)
+|| .|+.. ||+.|+.+|++|.|++..+.- ......++.|.+
T Consensus 14 ~GHv~Rcl~----LA~~l~~~g~~v~f~~~~~~~--~~~~~i~~~g~~ 55 (279)
T TIGR03590 14 LGHVMRCLT----LARALHAQGAEVAFACKPLPG--DLIDLLLSAGFP 55 (279)
T ss_pred ccHHHHHHH----HHHHHHHCCCEEEEEeCCCCH--HHHHHHHHcCCe
Confidence 899 57886 566667789999999876532 223344455543
No 167
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=26.55 E-value=2.4e+02 Score=24.10 Aligned_cols=65 Identities=8% Similarity=0.037 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchhHHHHHHHH
Q 012397 63 SFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMI 142 (464)
Q Consensus 63 ~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~~~~~~r~s~~~~~~~~~~ 142 (464)
-..++++.||..|++|.+. |.|---..+...|++. .-+-+++|. .. +.+...+.++.
T Consensus 17 Gk~iv~~~l~~~GfeVi~L-G~~v~~e~~v~aa~~~-----------------~adiVglS~--l~---~~~~~~~~~~~ 73 (134)
T TIGR01501 17 GNKILDHAFTNAGFNVVNL-GVLSPQEEFIKAAIET-----------------KADAILVSS--LY---GHGEIDCKGLR 73 (134)
T ss_pred hHHHHHHHHHHCCCEEEEC-CCCCCHHHHHHHHHHc-----------------CCCEEEEec--cc---ccCHHHHHHHH
Confidence 3467899999999999854 4432222333333332 223344442 11 24566677788
Q ss_pred HHHHHCCc
Q 012397 143 TQIINNDC 150 (464)
Q Consensus 143 ~~L~~~G~ 150 (464)
+.|.++|+
T Consensus 74 ~~l~~~gl 81 (134)
T TIGR01501 74 QKCDEAGL 81 (134)
T ss_pred HHHHHCCC
Confidence 88888876
No 168
>PRK13671 hypothetical protein; Provisional
Probab=26.19 E-value=2.7e+02 Score=27.38 Aligned_cols=68 Identities=12% Similarity=0.164 Sum_probs=38.3
Q ss_pred CCcCCcccchhHHHHHHHHHHHHHCCC-eEEEecCCccc--cH-HH---HHH---HHHcCCC-----h----HHHHHHHH
Q 012397 50 YDLSHLGHARAAVSFDLLYRYLEHLKC-EVTYVRNFTDV--DD-KI---IRR---ANDLGEN-----P----LSLSNRYC 110 (464)
Q Consensus 50 ~G~lHiGHar~~l~~D~laR~lr~~G~-~V~~i~~~dd~--g~-~i---~~~---a~~~g~~-----~----~~~~~~~~ 110 (464)
+.|+|.||++-+ ....+..|- .|.++..-+-. |. .+ ..| +.+.|.| | -.-++.|.
T Consensus 9 FNP~H~GHl~~~------~~a~~~~~~d~vi~vpSg~~~qrg~pa~~~~~~R~~ma~~~G~DLViELP~~~a~~sAe~FA 82 (298)
T PRK13671 9 YNPFHNGHIYQI------NYIKNKFPNEKIIVILSGKYTQRGEIAVASFEKRKKIALKYGVDKVIKLPFEYATQAAHIFA 82 (298)
T ss_pred eCCccHHHHHHH------HHHHHhcCCCEEEEEECcCCCCCCCCCCCCHHHHHHHHHHcCCCEEEeccHHHHhhchHHHH
Confidence 489999998743 233344554 44454422222 11 11 122 3345766 3 34456677
Q ss_pred HHHHHHHHhcCCC
Q 012397 111 QEYLVDMADLQCL 123 (464)
Q Consensus 111 ~~~~~~l~~lgi~ 123 (464)
..=.+.|..+||.
T Consensus 83 ~gaV~lL~~lgvd 95 (298)
T PRK13671 83 KGAIKKLNKEKID 95 (298)
T ss_pred HHHHHHHHHcCCC
Confidence 7777889999975
No 169
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=26.18 E-value=1e+02 Score=26.04 Aligned_cols=40 Identities=23% Similarity=0.345 Sum_probs=29.8
Q ss_pred cccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHH
Q 012397 55 LGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRR 94 (464)
Q Consensus 55 iGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~ 94 (464)
|||.++.-+++.+.++|+..|.++.-...-...|..++.+
T Consensus 4 Ivhg~~~~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~ 43 (125)
T PF10137_consen 4 IVHGRDLAAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEK 43 (125)
T ss_pred EEeCCCHHHHHHHHHHHHhCCCceEEeecCCCCCCchHHH
Confidence 7899989999999999999998887554333555544433
No 170
>PRK09620 hypothetical protein; Provisional
Probab=26.06 E-value=1.1e+02 Score=28.63 Aligned_cols=48 Identities=13% Similarity=0.092 Sum_probs=36.1
Q ss_pred CcceEEEeCCCCC---CcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCc
Q 012397 38 GKVGMYVCGVTAY---DLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFT 85 (464)
Q Consensus 38 ~~~~v~~~~P~p~---G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~d 85 (464)
|+..+++.|||.= ..=.|+|.-+--+|-.+|+.+..+|++|.++.|..
T Consensus 3 gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~~ 53 (229)
T PRK09620 3 GKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGYF 53 (229)
T ss_pred CCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 3444455567633 45578887788889999999999999999998753
No 171
>TIGR00125 cyt_tran_rel cytidyltransferase-related domain. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate.
Probab=25.98 E-value=55 Score=23.50 Aligned_cols=30 Identities=23% Similarity=0.185 Sum_probs=17.2
Q ss_pred CCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCc
Q 012397 49 AYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFT 85 (464)
Q Consensus 49 p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~d 85 (464)
...++|.||.+-. +..+..+.++....+.|
T Consensus 7 ~Fdp~H~GH~~~l-------~~a~~~~~~~vv~i~~~ 36 (66)
T TIGR00125 7 TFDPFHLGHLDLL-------ERAKELFDELIVGVGSD 36 (66)
T ss_pred ccCCCCHHHHHHH-------HHHHHhCCEEEEEECch
Confidence 4578999998632 23334344555554443
No 172
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=22.55 E-value=79 Score=28.67 Aligned_cols=31 Identities=13% Similarity=0.016 Sum_probs=23.1
Q ss_pred cccchhHHHHHHHHHHHHHCCCeEEEecCCc
Q 012397 55 LGHARAAVSFDLLYRYLEHLKCEVTYVRNFT 85 (464)
Q Consensus 55 iGHar~~l~~D~laR~lr~~G~~V~~i~~~d 85 (464)
|+|.-+--.|-.||+.+..+|++|.++.|--
T Consensus 23 ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 23 ITNRSSGKMGAALAEEAARRGAEVTLIHGPS 53 (185)
T ss_dssp EEES--SHHHHHHHHHHHHTT-EEEEEE-TT
T ss_pred ecCCCcCHHHHHHHHHHHHCCCEEEEEecCc
Confidence 4555566788889999999999999999874
No 173
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=22.46 E-value=80 Score=30.37 Aligned_cols=83 Identities=8% Similarity=0.169 Sum_probs=55.4
Q ss_pred CCcceeEEecCCcceeec--ccCCCCcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHH
Q 012397 15 MDLTLKIYNSMTQQKELF--TPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKII 92 (464)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~ 92 (464)
+|-.|+ |.++.+++... .|.+-|-..++++.|-|++..-+.-+-.++.-|+- |+...-|.++.|.+.-|.+..+++
T Consensus 139 fprhms-~~~l~~Rr~~M~~~C~~lGi~fv~~taPDP~sd~gv~gaqqfIlE~vp-~~i~kYGkdtaff~TN~a~~epll 216 (275)
T PF12683_consen 139 FPRHMS-YELLARRRDIMEEACKDLGIKFVEVTAPDPTSDVGVAGAQQFILEDVP-KWIKKYGKDTAFFCTNDAMTEPLL 216 (275)
T ss_dssp ETTGGG-SHHHHHHHHHHHHHHHHCT--EEEEEE---SSTCHHHHHHHHHHHHHH-HHHHHH-S--EEEESSHHHHHHHH
T ss_pred chhhcc-hHHHHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCcHHHHHHHHHHHH-HHHHHhCCceeEEecCccccHHHH
Confidence 344455 55666665433 46666888999999999998877778888888865 455556999999999999999999
Q ss_pred HHHHHcC
Q 012397 93 RRANDLG 99 (464)
Q Consensus 93 ~~a~~~g 99 (464)
.++.+.|
T Consensus 217 k~~~~~g 223 (275)
T PF12683_consen 217 KQALEYG 223 (275)
T ss_dssp HHHHHH-
T ss_pred HHHHHcC
Confidence 9888764
No 174
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=21.51 E-value=2.9e+02 Score=23.45 Aligned_cols=23 Identities=9% Similarity=-0.047 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHCCCeEEEecC
Q 012397 61 AVSFDLLYRYLEHLKCEVTYVRN 83 (464)
Q Consensus 61 ~l~~D~laR~lr~~G~~V~~i~~ 83 (464)
-+-+++++++|+..|++|.....
T Consensus 16 d~g~~iv~~~l~~~GfeVi~lg~ 38 (132)
T TIGR00640 16 DRGAKVIATAYADLGFDVDVGPL 38 (132)
T ss_pred HHHHHHHHHHHHhCCcEEEECCC
Confidence 35568899999999999996543
No 175
>KOG2623 consensus Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=21.02 E-value=2.8e+02 Score=28.34 Aligned_cols=60 Identities=17% Similarity=-0.015 Sum_probs=32.4
Q ss_pred CCeeEEEecccCccccchHHHHHHhhccCCCCccEEEEeeeeee-CCcccccccCCccCHHH
Q 012397 235 SKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQ 295 (464)
Q Consensus 235 ~~~~i~~~G~D~~~~h~~~~~a~~~a~~~~~~~~~~~~~~~v~~-~G~KmSks~gn~i~~~d 295 (464)
..+.++.+|.|+.-.=..+.-.+-.....+..+-- +....++- .|.|+-||-||.||++-
T Consensus 226 ~g~~~QlGGsDQwGNitaG~dlI~ki~~~~~~vfG-lT~PLlTsstG~KlGKSaGnAvWLdp 286 (467)
T KOG2623|consen 226 YGCRFQLGGSDQWGNITAGTDLIRKIMPIQAFVFG-LTFPLLTSSTGAKLGKSAGNAVWLDP 286 (467)
T ss_pred cCeeEEecccccccccchHHHHHHHhcccccceee-eeeeeEecCcchhhccCCCceEEecC
Confidence 46899999999532111111111111111111111 22234554 89999999999998753
No 176
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=20.42 E-value=4.6e+02 Score=22.20 Aligned_cols=66 Identities=11% Similarity=0.055 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchhHHHHHHH
Q 012397 62 VSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDM 141 (464)
Q Consensus 62 l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~~~~~~r~s~~~~~~~~~ 141 (464)
+-.+++++.|+..|++|... |.|---..+...|.+. .-+-+++|. .. +.+...+.++
T Consensus 14 iGkniv~~~L~~~GfeVidL-G~~v~~e~~v~aa~~~-----------------~adiVglS~--L~---t~~~~~~~~~ 70 (128)
T cd02072 14 VGNKILDHAFTEAGFNVVNL-GVLSPQEEFIDAAIET-----------------DADAILVSS--LY---GHGEIDCKGL 70 (128)
T ss_pred HHHHHHHHHHHHCCCEEEEC-CCCCCHHHHHHHHHHc-----------------CCCEEEEec--cc---cCCHHHHHHH
Confidence 34567999999999999843 3432222333333332 222234431 11 1355666667
Q ss_pred HHHHHHCCc
Q 012397 142 ITQIINNDC 150 (464)
Q Consensus 142 ~~~L~~~G~ 150 (464)
+..|.++|+
T Consensus 71 ~~~l~~~gl 79 (128)
T cd02072 71 REKCDEAGL 79 (128)
T ss_pred HHHHHHCCC
Confidence 777777666
Done!