Query 012397
Match_columns 464
No_of_seqs 189 out of 1800
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 08:39:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012397.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012397hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tqo_A Cysteinyl-tRNA syntheta 100.0 9.2E-83 3.1E-87 649.9 38.7 395 18-440 4-399 (462)
2 3sp1_A Cysteinyl-tRNA syntheta 100.0 5.6E-80 1.9E-84 631.6 30.9 379 14-399 19-416 (501)
3 1li5_A Cysrs, cysteinyl-tRNA s 100.0 6.8E-79 2.3E-83 628.2 37.6 393 19-439 2-395 (461)
4 3c8z_A Cysteinyl-tRNA syntheta 100.0 8.6E-72 3E-76 569.6 35.9 365 14-400 16-390 (414)
5 3u1f_A Methionyl-tRNA syntheta 100.0 3.2E-65 1.1E-69 541.0 25.4 405 41-454 10-501 (542)
6 4dlp_A Aminoacyl-tRNA syntheta 100.0 5.2E-65 1.8E-69 537.5 24.8 413 31-453 16-499 (536)
7 2csx_A Methionyl-tRNA syntheta 100.0 8.2E-65 2.8E-69 532.0 22.5 403 40-453 5-469 (497)
8 3h99_A Methionyl-tRNA syntheta 100.0 8.7E-64 3E-68 530.8 29.3 413 34-453 12-522 (560)
9 3kfl_A Methionyl-tRNA syntheta 100.0 6E-64 2E-68 531.1 27.6 416 30-454 15-517 (564)
10 1rqg_A Methionyl-tRNA syntheta 100.0 7.3E-63 2.5E-67 534.8 29.6 410 39-453 3-522 (722)
11 2d5b_A Methionyl-tRNA syntheta 100.0 2.3E-63 8E-68 521.8 24.7 401 41-453 4-470 (500)
12 2x1l_A Methionyl-tRNA syntheta 100.0 8.2E-63 2.8E-67 520.1 22.8 405 37-453 9-492 (524)
13 1gax_A Valrs, valyl-tRNA synth 100.0 5.3E-54 1.8E-58 470.9 33.6 417 38-462 34-706 (862)
14 1ffy_A Isoleucyl-tRNA syntheta 100.0 2.5E-52 8.6E-57 461.4 30.5 421 38-462 48-785 (917)
15 1ile_A Ilers, isoleucyl-tRNA s 100.0 2.9E-52 1E-56 459.2 24.8 419 38-462 38-787 (821)
16 4arc_A Leucine--tRNA ligase; l 100.0 4.3E-49 1.5E-53 430.7 32.0 419 29-462 41-808 (880)
17 2zue_A Arginyl-tRNA synthetase 100.0 1.1E-50 3.7E-55 432.1 18.9 384 36-440 117-626 (629)
18 1iq0_A Arginyl-tRNA synthetase 100.0 1.5E-50 5.1E-55 429.8 17.3 381 39-440 104-589 (592)
19 1wkb_A Leucyl-tRNA synthetase; 100.0 8.1E-49 2.8E-53 432.3 31.1 206 235-451 602-810 (810)
20 1wz2_A Leucyl-tRNA synthetase; 100.0 1.5E-48 5E-53 435.3 32.5 217 235-462 602-821 (967)
21 2v0c_A Aminoacyl-tRNA syntheta 100.0 2.1E-48 7.2E-53 428.4 31.8 403 42-462 37-805 (878)
22 1f7u_A Arginyl-tRNA synthetase 100.0 9.7E-47 3.3E-51 398.8 20.9 361 36-440 141-604 (607)
23 3fnr_A Arginyl-tRNA synthetase 100.0 9.4E-45 3.2E-49 371.9 28.3 359 36-440 28-451 (464)
24 1irx_A Lysyl-tRNA synthetase; 100.0 5.2E-42 1.8E-46 360.0 8.5 271 42-339 21-337 (523)
25 1qtq_A GLNRS, protein (glutami 99.9 1.2E-26 4.1E-31 238.8 11.9 254 45-330 31-332 (553)
26 3aii_A Glutamyl-tRNA synthetas 99.9 4.4E-27 1.5E-31 242.0 8.5 256 38-331 95-395 (553)
27 2hz7_A Glutaminyl-tRNA synthet 99.9 3.9E-25 1.3E-29 236.7 14.6 261 38-330 62-372 (851)
28 2cfo_A Glutamyl-tRNA synthetas 99.9 2.3E-22 7.7E-27 207.1 19.8 241 46-327 7-296 (492)
29 1nzj_A Hypothetical protein YA 99.9 2E-22 6.7E-27 195.1 10.4 207 46-295 11-240 (298)
30 2o5r_A Glutamyl-tRNA synthetas 99.8 1.1E-19 3.8E-24 186.9 20.5 229 38-312 11-292 (481)
31 4g6z_A Glutamate-tRNA ligase; 99.8 8.7E-18 3E-22 171.7 21.9 248 46-328 31-312 (490)
32 1j09_A Glutamyl-tRNA synthetas 99.8 2.2E-18 7.6E-23 176.4 16.3 236 46-327 7-291 (468)
33 3al0_C Glutamyl-tRNA(Gln) amid 99.8 7.8E-18 2.7E-22 176.8 17.5 224 38-312 128-389 (592)
34 3afh_A Glutamyl-tRNA synthetas 99.8 2.6E-17 8.8E-22 169.1 20.9 231 46-326 31-301 (488)
35 4gri_A Glutamate--tRNA ligase; 99.7 3.4E-16 1.2E-20 162.7 22.9 248 46-328 30-322 (512)
36 2ja2_A Glutamyl-tRNA synthetas 99.7 1.8E-16 6.3E-21 162.8 18.6 232 46-312 12-287 (498)
37 2cyb_A Tyrosyl-tRNA synthetase 98.7 2.6E-08 8.8E-13 97.7 7.6 69 236-312 170-239 (323)
38 2g36_A Tryptophanyl-tRNA synth 98.1 5.9E-06 2E-10 81.1 9.5 72 42-124 14-85 (340)
39 2dlc_X Tyrosyl-tRNA synthetase 98.0 1.2E-05 4.1E-10 80.7 9.0 85 38-134 37-127 (394)
40 2zp1_A Tyrosyl-tRNA synthetase 98.0 1.1E-05 3.6E-10 78.6 7.6 82 38-133 26-107 (314)
41 1n3l_A Tyrosyl-tRNA synthetase 97.9 2.3E-05 7.7E-10 78.1 8.8 68 236-311 178-247 (372)
42 2cya_A Tyrosyl-tRNA synthetase 97.9 2.2E-05 7.4E-10 77.9 7.8 75 40-124 35-109 (364)
43 2el7_A Tryptophanyl-tRNA synth 97.8 5.3E-05 1.8E-09 74.3 8.9 80 236-323 141-233 (337)
44 3hzr_A Tryptophanyl-tRNA synth 97.7 0.00027 9.1E-09 70.3 12.3 76 38-124 80-155 (386)
45 3tzl_A Tryptophanyl-tRNA synth 97.6 1.2E-05 4.2E-10 78.3 1.8 69 43-124 6-74 (322)
46 3vgj_A Tyrosyl-tRNA synthetase 97.6 0.00017 5.8E-09 71.6 8.6 76 40-124 56-131 (373)
47 3jxe_A Tryptophanyl-tRNA synth 97.5 0.00026 9E-09 70.5 9.2 76 38-124 71-147 (392)
48 3hv0_A Tryptophanyl-tRNA synth 97.5 0.00054 1.9E-08 68.3 11.4 76 38-124 72-149 (393)
49 3i05_A Tryptophanyl-tRNA synth 97.4 0.00037 1.3E-08 69.5 8.6 77 37-124 75-152 (395)
50 3prh_A Tryptophanyl-tRNA synth 97.3 0.0014 4.9E-08 65.0 11.3 69 43-124 38-106 (388)
51 2cyc_A Tyrosyl-tRNA synthetase 97.3 0.00045 1.5E-08 68.7 7.6 75 41-124 34-113 (375)
52 1i6k_A TRPRS, tryptophanyl-tRN 97.3 9.8E-05 3.4E-09 72.1 2.6 70 42-124 3-72 (328)
53 3tze_A Tryptophanyl-tRNA synth 97.2 0.0011 3.6E-08 66.4 9.0 76 38-124 99-175 (406)
54 2j5b_A Tyrosyl-tRNA synthetase 97.1 0.00053 1.8E-08 67.5 5.8 76 39-124 39-115 (348)
55 3p0j_A Tyrosyl-tRNA synthetase 97.0 0.0016 5.4E-08 69.6 9.0 78 38-124 38-115 (690)
56 2ip1_A Tryptophanyl-tRNA synth 96.9 0.0011 3.7E-08 67.0 6.5 77 38-124 100-177 (432)
57 1r6t_A Tryptophanyl-tRNA synth 96.9 0.0016 5.5E-08 66.6 7.5 75 38-124 153-229 (477)
58 1y42_X Tyrosyl-tRNA synthetase 96.0 0.0084 2.9E-07 59.7 6.2 74 236-312 232-321 (392)
59 2yxn_A Tyrosyl-tRNA synthetase 95.9 0.0033 1.1E-07 61.1 3.0 72 236-312 191-263 (322)
60 1h3f_A Tyrosyl-tRNA synthetase 95.8 0.006 2.1E-07 61.6 4.5 69 236-312 187-257 (432)
61 1jil_A Tyrrs, tyrosyl-tRNA syn 95.8 0.013 4.5E-07 58.9 6.6 57 236-295 186-244 (420)
62 2pid_A Tyrosyl-tRNA synthetase 95.6 0.0097 3.3E-07 58.5 4.9 72 236-312 210-282 (356)
63 2jan_A Tyrosyl-tRNA synthetase 95.5 0.012 4.1E-07 59.2 5.4 72 236-312 187-260 (432)
64 2ts1_A Tyrosyl-tRNA synthetase 95.5 0.0092 3.2E-07 59.9 4.2 70 236-310 185-256 (419)
65 1yi8_B Tryptophanyl-tRNA synth 93.1 0.027 9.2E-07 55.3 1.6 72 41-124 23-94 (351)
66 3a04_A Tryptophanyl-tRNA synth 92.3 0.2 6.8E-06 49.4 6.5 77 37-124 67-143 (372)
67 2yy5_A Tryptophanyl-tRNA synth 92.1 0.12 4E-06 50.6 4.6 81 42-135 6-87 (348)
68 1r6u_A Tryptophanyl-tRNA synth 90.3 0.16 5.5E-06 51.1 3.6 76 38-124 106-182 (437)
69 3foc_A Tryptophanyl-tRNA synth 87.1 0.33 1.1E-05 48.9 3.2 77 38-124 89-166 (451)
70 3foc_A Tryptophanyl-tRNA synth 85.8 2 6.8E-05 43.2 8.2 53 239-295 290-347 (451)
71 1y42_X Tyrosyl-tRNA synthetase 85.1 1.1 3.7E-05 44.4 5.8 39 40-82 64-103 (392)
72 2pid_A Tyrosyl-tRNA synthetase 83.8 0.55 1.9E-05 46.0 3.0 40 39-82 45-85 (356)
73 2jan_A Tyrosyl-tRNA synthetase 83.4 0.64 2.2E-05 46.6 3.3 40 40-83 32-72 (432)
74 1yi8_B Tryptophanyl-tRNA synth 83.3 0.81 2.8E-05 44.7 4.0 70 236-311 162-239 (351)
75 1r6u_A Tryptophanyl-tRNA synth 81.4 2 7E-05 43.1 6.1 55 236-295 256-316 (437)
76 2ts1_A Tyrosyl-tRNA synthetase 79.4 1.1 3.7E-05 44.8 3.3 39 41-83 31-70 (419)
77 2yxn_A Tyrosyl-tRNA synthetase 78.4 0.94 3.2E-05 43.7 2.5 40 40-83 33-73 (322)
78 1jil_A Tyrrs, tyrosyl-tRNA syn 77.0 1.1 3.7E-05 44.9 2.5 40 40-83 32-72 (420)
79 3sz3_A Tryptophanyl-tRNA synth 75.3 2.2 7.6E-05 41.3 4.1 70 42-124 8-77 (341)
80 3a04_A Tryptophanyl-tRNA synth 74.7 2.1 7.3E-05 42.0 3.9 59 234-295 206-270 (372)
81 1h3f_A Tyrosyl-tRNA synthetase 73.3 2 6.7E-05 43.2 3.3 42 38-83 35-77 (432)
82 3n9i_A Tryptophanyl-tRNA synth 71.9 3.4 0.00012 40.1 4.6 69 42-124 17-86 (346)
83 3n9i_A Tryptophanyl-tRNA synth 70.5 8.3 0.00028 37.3 6.9 60 235-295 151-223 (346)
84 2yy5_A Tryptophanyl-tRNA synth 65.9 1.9 6.6E-05 41.9 1.3 74 232-311 143-229 (348)
85 3sz3_A Tryptophanyl-tRNA synth 63.4 3.7 0.00013 39.8 2.8 28 279-311 197-228 (341)
86 3p0j_A Tyrosyl-tRNA synthetase 50.8 46 0.0016 35.3 8.9 77 49-133 390-467 (690)
87 3p8c_E Probable protein brick1 28.5 1.7E+02 0.0058 21.3 6.3 56 371-429 10-65 (75)
88 2zvi_A 2,3-diketo-5-methylthio 24.3 83 0.0028 31.1 5.1 67 45-121 343-420 (425)
89 3pp5_A BRK1, protein brick1; t 23.4 2.1E+02 0.0073 20.6 6.3 56 372-430 11-66 (73)
90 2odv_A Plectin 1, HD1; plakin 21.5 4.3E+02 0.015 23.5 9.7 85 362-455 19-110 (235)
91 4amg_A Snogd; transferase, pol 20.4 50 0.0017 31.5 2.7 26 55-83 33-58 (400)
No 1
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=100.00 E-value=9.2e-83 Score=649.88 Aligned_cols=395 Identities=46% Similarity=0.774 Sum_probs=352.8
Q ss_pred ceeEEecCCcceeecccCCCCcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHH
Q 012397 18 TLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRAND 97 (464)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~ 97 (464)
+|+||||+||++++|.|..+++|.+|+|||||||.+||||+|+++++|+++|++|++|++|.|+.|+||+|+||+.+|++
T Consensus 4 ~l~~yntlt~~ke~f~p~~~~~v~~YvcGPtvy~~~HIGHaR~~v~~Dvl~R~lr~~Gy~V~~v~n~dD~ddKIi~~A~~ 83 (462)
T 3tqo_A 4 SVKIFNSLTKQKEIFKPIESGKVKLYVCGMTVYDYMHIGHGRSWIIFDMVVRYLRMRGYEVTFVRNITDIDDKIIKRAGE 83 (462)
T ss_dssp CCEEEETTTTEEEECCCSSTTEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEECBBCCCHHHHHHHHH
T ss_pred eEEEEEcCCCceeccccCCCCeEEEEeCCCcCCCCCchhhhHHHHHHHHHHHHHHHcCCceEEecCcCCCCcHHHHHHHH
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchhHHHHHHHHHHHHHCCceEee-cCcEEEcCCCCCCCCCCCCccc
Q 012397 98 LGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVV-EGDVFFAVEKSPNYGRLSGQRL 176 (464)
Q Consensus 98 ~g~~~~~~~~~~~~~~~~~l~~lgi~~~~~~~r~s~~~~~~~~~~~~L~~~G~~y~~-~~~~~~~~~~~~~~g~l~~~~~ 176 (464)
+|++|++++++|.+.|.+++++|||.+++.++|+|+|++.+++++++|+++|++|+. .+++|||+.+++.||+|++..+
T Consensus 84 ~g~~~~e~a~~~~~~f~~d~~~LgI~~d~~~praTe~i~~i~~~i~~L~ekG~aY~~~~g~Vyfdv~~~~~yg~Ls~~~~ 163 (462)
T 3tqo_A 84 NKESPAALAERFIQILHEDEKALRVLSPDQEPRATQYVPEIIKLIQKLLDNQYAYTGQNGDVFFDVRRFKDYGKLSHRHL 163 (462)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHTCCCCSBCCBGGGCHHHHHHHHHHHHHHTSEEECTTSCEEECTTTCTTTTTTTTCSC
T ss_pred cCCCHHHHHHHHHHHHHHHHHHcCCCCCccccChhhHHHHHHHHHHHHHHCCCEEEecCCcEEeccccccccccccCCCh
Confidence 999999999999999999999999998788899999999999999999999999998 7899999999999999999999
Q ss_pred cccccCCCcccCCcccCcccccccccccCCCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCccccchHHHH
Q 012397 177 ENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIA 256 (464)
Q Consensus 177 ~~~~~g~~~~~~~~k~~~~d~~~w~~~~~g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h~~~~~a 256 (464)
+++..|.++....+|++|.||++||..++|+|.|+++||.|+|+||++|++|+.+++|.++|||++|.|++||||.+.++
T Consensus 164 ~~~~~g~r~~~~~~K~~p~DF~LWK~~k~~ep~W~spwG~GrPGWHiEcsam~~~~lG~~~dih~gG~Dl~FpHheneia 243 (462)
T 3tqo_A 164 DELQAGARVEVSDSKRDPLDFVLWKKAKPGEPKWDSPWGEGRPGWHIECSAMSSSILGQPFDIHGGGLDLKFPHHENEIA 243 (462)
T ss_dssp C------------CCSSTTCEEEEEECCTTSCCBCCTTCSEEECHHHHHHHHHHHHHCSSEEEEEEEGGGTTTHHHHHHH
T ss_pred HHhhccCccccccccCCccccceeeecCCCCCcccCCCCCCCCCCceehHHHHHHhcCCCeEEEccccccccHHHHhHHH
Confidence 99988998887888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCCCccEEEEeeeeeeCCcccccccCCccCHHHHHHhcCchhHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHH
Q 012397 257 QSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIY 336 (464)
Q Consensus 257 ~~~a~~~~~~~~~~~~~~~v~~~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~~~~~~~~f~~~~~~~~~~~l~~l~ 336 (464)
++.++.+.+++++|+|+|+++++|+|||||+||+|+|.|++++||+|++|||+++.++.++++|+++.+.++.+.+.+|+
T Consensus 244 qs~a~~g~p~~~~w~H~g~v~~~G~KMSKSlGN~i~~~dll~~~g~dalR~~lls~~yr~~l~fs~~~l~~a~~~l~rl~ 323 (462)
T 3tqo_A 244 QSEAGEEKPFVKLWMHAGLLEINKEKMSKSLGNIISIREALKESDVEVLRYFLLSGHYRNPLSYSKENLENGRLALERFY 323 (462)
T ss_dssp HHHHHHSSCCEEEEEEECCEEETTEECCTTTTCCCBHHHHHHHSCHHHHHHHHHHSCTTSCEEECHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCcceEEEEccEEecCCcCccccCCCcccHHHHHhhcChHHhhhhhccCCCCCCcCcCHHHHHHHHHHHHHHH
Confidence 99999888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCccccCCCccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhcccCchhhhhh
Q 012397 337 QTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLS 416 (464)
Q Consensus 337 ~~~~~~~~~l~~~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~~~~~~~~~~~~ 416 (464)
++++++. ... + ..+..+.+.+.++|+|+|++|.|++. |+++++.+|+..+...
T Consensus 324 ~~~~~~~----~~~------~------~~~~~~~~~~~~a~~dD~nt~~a~~~-l~~~~~~~n~~~~~~~---------- 376 (462)
T 3tqo_A 324 LALRGLP----VVN------H------EKTSSYTDRFYEAMDDDFNTPIAFAL-LFEMVREINRFRDNNQ---------- 376 (462)
T ss_dssp HHHTTCC----C------------------CHHHHHHHHHHTBTCCHHHHHHH-HHHHHHHHHHHHHTTC----------
T ss_pred HHHHHhh----hcc------c------hhHHHHHHHHHHHHHhccChHHHHHH-HHHHHHHHhhhhcccc----------
Confidence 9876431 110 0 02345678899999889999999999 9999999999865322
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCC
Q 012397 417 LIESLRKIENEVKEVLRILGLLPP 440 (464)
Q Consensus 417 r~~~~~~~~~~l~~~l~lLgi~p~ 440 (464)
...+..+...++.+..+|||.+.
T Consensus 377 -~~~~~~~~~~~~~~~~vlg~~~~ 399 (462)
T 3tqo_A 377 -IEKAAVLAAELKCLGNIFGLLQY 399 (462)
T ss_dssp -HHHHHHHHHHHHHHHGGGTCSCS
T ss_pred -HHHHHHHHHHHHHHHHhcCCCcc
Confidence 11223455677888899997654
No 2
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=100.00 E-value=5.6e-80 Score=631.58 Aligned_cols=379 Identities=30% Similarity=0.500 Sum_probs=300.6
Q ss_pred CCCcceeEEecCCcceeecccCCCCcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCc--------
Q 012397 14 KMDLTLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFT-------- 85 (464)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~d-------- 85 (464)
+..-+|+||||+||++++|.|.+ +|++|+|||||||.+||||+|++|++|+++|++|++|++|.|+.|++
T Consensus 19 ~~~m~l~lyntltr~ke~f~p~~--~v~~YvcgPTvYg~~HIGHar~~v~~Dvl~R~lr~~Gy~V~~v~niTDvGhltG~ 96 (501)
T 3sp1_A 19 PGSMILKLYNTRTKDFSELTNFE--NVKVYACGPTVYNYAHIGNFRTYIFGDLLIKTLRFLGYKVNYAMNITDIGHLTGD 96 (501)
T ss_dssp ---CCEEEEETTTTEEEEECCCS--CEEEEECCCBCSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEBCSCCC---
T ss_pred CCCCeEEEEECCCCccccccccC--cceEEeCCCcCCCCcchhhhHHHHHHHHHHHHHHHcCCceeEEeeecccccccCC
Confidence 34456999999999999999976 99999999999999999999999999999999999999999997654
Q ss_pred --cccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCC
Q 012397 86 --DVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVE 163 (464)
Q Consensus 86 --d~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~~~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~ 163 (464)
+||+||+.+|+++|++|++++++|.+.|.+++++|||.+++..+++++|++.++++|++|+++|++|+.++++|||+.
T Consensus 97 ~DehddKI~~~A~~~g~~~~e~a~~~~~~f~~d~~~Lgi~~d~~~~~~t~hi~~v~~~i~~L~~kG~aY~~~g~Vyf~v~ 176 (501)
T 3sp1_A 97 LDDGEDKVAKTAREKGLTVYEISEFFTEAFFNDCRKLNIVYPDKVLVASKHIPIMIEVVKILEEKKITYFSNGNVYFDTS 176 (501)
T ss_dssp ----------------CCHHHHHHHHHHHHHHHHHHTTCCCCSEEEEGGGCHHHHHHHHHHHHHTTCEEEETTEEEECGG
T ss_pred CCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCCcccCcchHHHHHHHHHHHHHHCCCEEEeCCcEEecCC
Confidence 449999999999999999999999999999999999998777888889999999999999999999999999999999
Q ss_pred CCCCCCCCCCccc-cccccCCCcccCCcccCccccccccc--c-cCCCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeE
Q 012397 164 KSPNYGRLSGQRL-ENNRAGERVAVDSRKRNPADFALWKA--A-KAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDI 239 (464)
Q Consensus 164 ~~~~~g~l~~~~~-~~~~~g~~~~~~~~k~~~~d~~~w~~--~-~~g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i 239 (464)
+++.||++++..+ +++..|.+++....|++|.||++||. . ..+++.|+++||.|+|+||++|++|+.++||.++||
T Consensus 177 ~f~~yG~ls~~~~~~~~~~g~r~~~~~~K~~p~Df~lWk~~p~~~~~~~~W~spwG~GrPGWhiEcsam~~~~lg~~~DI 256 (501)
T 3sp1_A 177 CFKSYGEMAGIDLIDKDMTLPRVDVDKFKRNKTDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFKDALDI 256 (501)
T ss_dssp GCTTTTTTTC-----------------CCSSTTCEEEEEECCC-----CCBCCTTCSEEECHHHHHHHHHHHHTTTCCCE
T ss_pred ccCCccccCCCChhhhhccCCccCcccccCCchhhHhcCCCCCCCCCCceecCCCCCCCCCchHHHHHHHHHHcCCCceE
Confidence 9999999999988 88888888877778999999999987 3 368889999999999999999999999999999999
Q ss_pred EEecccCccccchHHHHHHhhccCCCCccEEEEeeeeeeCCcccccccCCccCHHHHHHh-cCchhHHHHHhhcCCCCcc
Q 012397 240 HGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITER-YHPLALRHFLISAHYRSPL 318 (464)
Q Consensus 240 ~~~G~D~~~~h~~~~~a~~~a~~~~~~~~~~~~~~~v~~~G~KmSks~gn~i~~~dll~~-~~~dalR~~ll~~~~~~~~ 318 (464)
|++|+|++||||.+++|+++|+++++|.++|+|+||++++|+|||||+||+|+|.|++++ ||+|++|||+++.++++++
T Consensus 257 H~gG~DLifpHheneiAqs~a~~g~~~~~~w~H~g~v~~~G~KMSKSlGN~it~~dll~~gyg~d~lR~~lls~~yr~~l 336 (501)
T 3sp1_A 257 HLGGVDHIGVHHINEIAIAECFLNKKWCDVFVHGEFLIMDYNKMSKSRGNFITVKDLEDQNFSPLDFRYLCLTSHYRNQL 336 (501)
T ss_dssp EEEEGGGTTTHHHHHHHHHHHHHTSCCCSEEEEECCEECC----------CCCHHHHHHTTCCHHHHHHHHHTSCTTSCE
T ss_pred EeeccccccchHHHHHHHHHHccCCCCCeEEEEeeeEeeCCeEccccCCCcCCHHHHHhcCCCHHHHHHHHHhccCCCCC
Confidence 999999999999999999999988899999999999999999999999999999999999 9999999999999999999
Q ss_pred CCCHHHHHHHHHH----HHHHHHHHHHHHHhcCccccCCCccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHH
Q 012397 319 NYSVLQLDSASDA----VFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDA 394 (464)
Q Consensus 319 ~f~~~~~~~~~~~----l~~l~~~~~~~~~~l~~~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l 394 (464)
+|+++.+.++.+. +.+|+++++++............ ...+ ...+..+.+.+.++|+|+|++|.|++. |+++
T Consensus 337 ~fs~~~l~~a~~~~~~ll~rl~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~f~~am~dDlnt~~al~~-l~~~ 411 (501)
T 3sp1_A 337 KFSLDNLQASKIARENLINKLSYFYESLDPVDLNTLNKDL-KNFG---FSVEKEYYDSFVEKISFDLNVAQGLAL-LWEI 411 (501)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHSCT-TSCS---SHHHHHHHHHHHHHHHBTSCHHHHHHH-HHHH
T ss_pred ccCHHHHHHHHHhhHHHHHHHHHHHHHHHhhhcccccccc-cchh---hhhHHHHHHHHHHHHHhccCcHHHHHH-HHHH
Confidence 9999999999999 77888777654322111000000 0111 234567788999999999999999999 9999
Q ss_pred HHHHH
Q 012397 395 LKFIN 399 (464)
Q Consensus 395 ~~~~n 399 (464)
++.+|
T Consensus 412 ~~~~~ 416 (501)
T 3sp1_A 412 IKSDN 416 (501)
T ss_dssp HHCSS
T ss_pred HHHhc
Confidence 99874
No 3
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=100.00 E-value=6.8e-79 Score=628.20 Aligned_cols=393 Identities=47% Similarity=0.818 Sum_probs=348.5
Q ss_pred eeEEecCCcceeecccCCCCcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHc
Q 012397 19 LKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDL 98 (464)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~ 98 (464)
|+||||+||++++|.|..++++.+|+|||||||++||||+|++|++|+++|++|++|++|.+++++||+|+||+.+|+++
T Consensus 2 l~~ynt~t~~~~~f~p~~~~~v~~yv~gPt~y~~~HiGHar~~v~~D~l~R~lr~~G~~V~~v~~~tD~d~ki~~~A~~~ 81 (461)
T 1li5_A 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANEN 81 (461)
T ss_dssp CEEEETTTTEEEECCCSSTTEEEEEECCCBSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHHHHHHHHT
T ss_pred cEEEeCCCCCccccccCCCCCeeEEEcCCcCCCCCcccccHHHHHHHHHHHHHHHcCCCEEEeecCCCCcHHHHHHHHHc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchhHHHHHHHHHHHHHCCceEee-cCcEEEcCCCCCCCCCCCCcccc
Q 012397 99 GENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVV-EGDVFFAVEKSPNYGRLSGQRLE 177 (464)
Q Consensus 99 g~~~~~~~~~~~~~~~~~l~~lgi~~~~~~~r~s~~~~~~~~~~~~L~~~G~~y~~-~~~~~~~~~~~~~~g~l~~~~~~ 177 (464)
|.+|++++++|.+.|.+++++|||.+++.++|+|+|++.+++++++|+++|++|+. ++++|||+.+++.||.+++..++
T Consensus 82 g~~~~~~~~~~~~~f~~~~~~LgI~~~d~~~r~t~~~~~~~~~i~~L~~~G~aY~~~~g~v~f~~~~~~~yg~lsg~~~~ 161 (461)
T 1li5_A 82 GESFVAMVDRMIAEMHKDFDALNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLD 161 (461)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTTCCCCSBCCBGGGCHHHHHHHHHHHHHTTSEEECTTSCEEECGGGCTTTTTTTTC---
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCCCcccccccchHHHHHHHHHHHHHCCCEEEecCCCEEEecccccccccccCCCHH
Confidence 99999999999999999999999997789999999999999999999999999999 89999999999999999998888
Q ss_pred ccccCCCcccCCcccCcccccccccccCCCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCccccchHHHHH
Q 012397 178 NNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257 (464)
Q Consensus 178 ~~~~g~~~~~~~~k~~~~d~~~w~~~~~g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h~~~~~a~ 257 (464)
++.+|+++.....|++|.||++|+..++|+++|+.+||.++|+||++|++|+.++||.++|||++|+|++|||+.+++++
T Consensus 162 ~l~~g~rv~~~~~k~~p~Df~lwk~~~~g~~~w~s~WG~g~PgWhiecsam~~~~lg~~~dih~gG~Dl~fpH~~~~~aq 241 (461)
T 1li5_A 162 QLQAGARVDVVDDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENEIAQ 241 (461)
T ss_dssp -------------CCSTTCEEEEEECCTTSCCBCCTTCSEEECSSHHHHHHHHHHHCSSEEEEECBGGGTTTHHHHHHHH
T ss_pred HhhcCCcccchhcccCccceEEEccCCCCCCcccCCCCCcCCCccchhHHHHHHHhCCCceEEeccCccCchHHHHHHHH
Confidence 88889888877778899999999988889999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCCCccEEEEeeeeeeCCcccccccCCccCHHHHHHhcCchhHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHHH
Q 012397 258 SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQ 337 (464)
Q Consensus 258 ~~a~~~~~~~~~~~~~~~v~~~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~~~~~~~~f~~~~~~~~~~~l~~l~~ 337 (464)
+.++.+.+++++|+|+||++++|+|||||+||+|+|.|+++.||+|++|||+++.+++++++|+++.+.++.+.+.++++
T Consensus 242 ~~a~~g~~~~~~~~h~g~v~~~G~KMSKS~GN~v~~~dll~~~g~dalR~~ll~~~~~~~~~fs~~~l~~~~~~l~rl~n 321 (461)
T 1li5_A 242 STCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHYRSQLNYSEENLKQARAALERLYT 321 (461)
T ss_dssp HHHHSSSCCEEEECCBCCEEETTBCCCGGGTCCCBHHHHHTTSCHHHHHHHHHSSCTTSCEEECHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCcEEEEeeEEEECCeEccccCCCccChhHHhhhCCHHHHHHHHHcCCcCCCCCCCHHHHHHHHHHHHHHHH
Confidence 99986668889999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHhcCccccCCCccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhcccCchhhhhhH
Q 012397 338 TLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSL 417 (464)
Q Consensus 338 ~~~~~~~~l~~~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~~~~~~~~~~~~r 417 (464)
.++++ .. .. .+ | .+.++.+.+.++|+++++++.|++. |+++++.+|+|++. + .
T Consensus 322 ~~~~~----~~----~~-~~-d-----~l~~~~~~~~~am~dd~n~~~Al~~-l~~l~~~~N~~~~~--~------~--- 374 (461)
T 1li5_A 322 ALRGT----DK----TV-AP-A-----GGEAFEARFIEAMDDDFNTPEAYSV-LFDMAREVNRLKAE--D------M--- 374 (461)
T ss_dssp HHTTC----CT----TS-CC-C-----SCHHHHHHHHHHHHBTSCHHHHHHH-HHHHHHHHHHHHHH--C------H---
T ss_pred HHHHh----hc----CC-CH-H-----HHHHHHHHHHHHHHhccCHHHHHHH-HHHHHHHHHHHHhc--c------H---
Confidence 77543 11 01 11 2 3677888999999889999999999 99999999999965 1 0
Q ss_pred HHHHHHHHHHHHHHHHhhccCC
Q 012397 418 IESLRKIENEVKEVLRILGLLP 439 (464)
Q Consensus 418 ~~~~~~~~~~l~~~l~lLgi~p 439 (464)
.++..+...|+.++.+|||..
T Consensus 375 -~~~~~~~~~~~~~~~~lG~~~ 395 (461)
T 1li5_A 375 -AAANAMASHLRKLSAVLGLLE 395 (461)
T ss_dssp -HHHHHHHHHHHHHHTTTTCSC
T ss_pred -HHHHHHHHHHHHHHHHcCCCc
Confidence 244556678888999999854
No 4
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=100.00 E-value=8.6e-72 Score=569.63 Aligned_cols=365 Identities=34% Similarity=0.542 Sum_probs=319.2
Q ss_pred CCCcceeEEecCCcceeecccCCCCcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHH
Q 012397 14 KMDLTLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIR 93 (464)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~ 93 (464)
+..++|+||||++++++.|.| ++++.+|+|||||||++||||+|+++++|+++|++|++|++|.+++|+||+|++|+.
T Consensus 16 ~~~~~~~lynt~~~~~~~f~p--~~~v~~y~~gPt~yg~~HiGHar~~v~~DvlaR~lr~~G~~V~~~~~~dd~g~ki~~ 93 (414)
T 3c8z_A 16 GRGPALRLFDSADRQVRPVTP--GPTATMYVCGITPYDATHLGHAATYLTFDLVHRLWLDAGHTVQYVQNVTDVDDPLFE 93 (414)
T ss_dssp SCCCCCEEEETTTTEEEECCC--CSEEEEEECCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCSCHHHHH
T ss_pred CCCCCcEEEeeccCCcccccC--CCCceEEeCCCcCCCCcCccccHHHHHHHHHHHHHHHcCCCEEeCCCCCCccHHHHH
Confidence 557899999999999999998 789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCChHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchhHHHHHHHHHHHHHCCceEeec----CcEEEcCCCCCCCC
Q 012397 94 RANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVE----GDVFFAVEKSPNYG 169 (464)
Q Consensus 94 ~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~~~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~----~~~~~~~~~~~~~g 169 (464)
+|++.|++|++++++|.+.|.+++++|||+.++.++|+++|.+.+++++++|+++|++|+++ +.+||+.+.++.||
T Consensus 94 ~A~~~g~~~~~~~~~~~~~~~~~~~~Lgi~~~d~~~r~t~~~~~~~~~~~~L~~kG~~Y~~~~~~e~~~~f~~~~~~~~g 173 (414)
T 3c8z_A 94 RAERDGIDWRTLGDRETQLFREDMAALRVLPPHDYVAATDAIAEVVEMVEKLLASGAAYIVEDAEYPDVYFRADATAQFG 173 (414)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHHHHTTCCCCSEEEEGGGCHHHHHHHHHHHHHHTSEEECSCSSCCCEEECTTSSTTTT
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCcceecccchHHHHHHHHHHHHHCCCEEeccCCcCCCEEEEchhhhhhH
Confidence 99999999999999999999999999999855889999999999999999999999999988 88999999999999
Q ss_pred CCCCccccccccC--CC-ccc-CCcccCcccccccccccCCCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEeccc
Q 012397 170 RLSGQRLENNRAG--ER-VAV-DSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGID 245 (464)
Q Consensus 170 ~l~~~~~~~~~~g--~~-~~~-~~~k~~~~d~~~w~~~~~g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D 245 (464)
.+++...+++..+ ++ ++. ...|+++.||++|+...+|++.|+.+||.++|+||++|++|+.++||.++|+|++|+|
T Consensus 174 ~l~~~~~~~~~~~~~~~~~~~~~~~k~~~~D~~lWk~~~pg~~~Wda~~g~g~pgWhiec~a~~~~~~g~~~di~~~G~D 253 (414)
T 3c8z_A 174 YESGYDRDTMLTLFAERGGDPDRPGKSDQLDALLWRAERPGEPSWPSPFGRGRPGWHVECSAIALTRIGTGLDIQGGGSD 253 (414)
T ss_dssp TTTCCCHHHHHHHHHHTTCCTTCTTCSSTTCEEEEEECCTTSCCBCCTTCSEEECHHHHHHHHHHHHTCSCEEEEEEEGG
T ss_pred hhcCCCHHHHHHHHhhccccccccccCCcchhhhcCCCCCCCCCCCCCCCCCCCCccchhHHHHHHhcCCCceEEEeccc
Confidence 9887655554322 11 222 3347788999999987889999999999999999999999999999999999999999
Q ss_pred CccccchHHHHHHhhccC-CCCccEEEEeeeeeeCCcccccccCCccCHHHHHHh-cCchhHHHHHhhcCCCCccCCCHH
Q 012397 246 LIFPHHENEIAQSCAACQ-DSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITER-YHPLALRHFLISAHYRSPLNYSVL 323 (464)
Q Consensus 246 ~~~~h~~~~~a~~~a~~~-~~~~~~~~~~~~v~~~G~KmSks~gn~i~~~dll~~-~~~dalR~~ll~~~~~~~~~f~~~ 323 (464)
|++||+.++++++.++.+ .+|+++++|+||++++|+|||||+||+|+|.|++++ ||+|++|||+++.++.++++|+++
T Consensus 254 ~~~~H~~~~~a~~~a~~g~~~~~~~~~h~g~v~~~G~KMSKS~GN~v~~~~ll~~g~g~D~lR~~ll~~~~~~d~~fs~~ 333 (414)
T 3c8z_A 254 LIFPHHEYSAAHAESVTGERRFARHYVHTGMIGWDGHKMSKSRGNLVLVSQLRAQGVDPSAIRLGLFSGHYREDRFWSNE 333 (414)
T ss_dssp GTTTHHHHHHHHHHHHHCCSCSEEEEEEECCBC-------------CBHHHHHHTTCCHHHHHHHHHTSCTTSCBCCCHH
T ss_pred cccHHHHHHHHHHHHhcCCCCcCeEEEEcCEEecCCeEcccccCCcCCHHHHhhccCCcchheeEEEecCcCCCCCcCHH
Confidence 999999999999999854 588889999899999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccccCCCccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHH
Q 012397 324 QLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINS 400 (464)
Q Consensus 324 ~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~ 400 (464)
.+.++.+.+.+|+++++++ . . + .+.++.+++.++|+++++++.|++. |+++++.+|+
T Consensus 334 ~l~~~~~~l~~l~n~~~~~----~----~----~-------~~~~~~~~v~~a~~d~~~~~~Al~~-i~~~~~~~n~ 390 (414)
T 3c8z_A 334 VLDEANARLARWRSATALP----E----A----P-------DATDVIARVRQYLADDLDTPKALAA-LDGWCTDALS 390 (414)
T ss_dssp HHHHHHHHHHHHHHHHTSS----C----B----S-------CCHHHHHHHHHHHHBTCCHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc----c----c----h-------hHHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHHHHh
Confidence 9999999999999887543 1 0 1 1256778899999779999999999 9999999999
No 5
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=100.00 E-value=3.2e-65 Score=540.97 Aligned_cols=405 Identities=16% Similarity=0.158 Sum_probs=318.9
Q ss_pred eEEEeC--CCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q 012397 41 GMYVCG--VTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMA 118 (464)
Q Consensus 41 ~v~~~~--P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~ 118 (464)
.+|||+ |.|||.||||||++++++|+++|++|++|++|.|++|+|+||.+|+.+|+++|++|++++++|.+.|.++++
T Consensus 10 ~f~Ittp~pY~nG~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~k~g~~~~e~~~~~~~~~~~~~~ 89 (542)
T 3u1f_A 10 VFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQKQVSPYDFTTAVAGEFKKCFE 89 (542)
T ss_dssp CEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred CEEEeCCCCCCCCchhhHHHHHHHHHHHHHHHHHhcCCCccccCccCcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 445555 455599999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCCCcc--hhHHHHHHHHHHHHHCCceEeecCcEEEcCCC------------CCCCCCCCCccccccccCCC
Q 012397 119 DLQCLPPTYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEK------------SPNYGRLSGQRLENNRAGER 184 (464)
Q Consensus 119 ~lgi~~~~~~~r~s--~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~------------~~~~g~l~~~~~~~~~~g~~ 184 (464)
+|||++ |.+.||+ +|.+.++++|.+|+++|++|++.+.++||+.| |+.||...+ ....+|..
T Consensus 90 ~lgi~~-D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~~l~d~~v~~~~~~~g~~~~---~~~~sg~~ 165 (542)
T 3u1f_A 90 QMDYSI-DYFIRTTNEQHKAVVKELWTKLEQKGDIYLGRYEGWYSISDESFLTPQNITDGVDKDGNPCK---VSLESGHV 165 (542)
T ss_dssp HHTCCC-SEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEEEECTTSCEEE---EETTTCCB
T ss_pred HhCCcc-CcCccCCCHHHHHHHHHHHHHHhhcCcEEecceeEEeeccCcccchhhhhhccccccCcccc---ccCCCCCc
Confidence 999995 7777776 68899999999999999999999999999874 334442110 00011222
Q ss_pred ccc----------CCc--------ccCccccccccc------------ccCCCCcccC----CCCCCCCc--------hh
Q 012397 185 VAV----------DSR--------KRNPADFALWKA------------AKAGEPSWDS----PWGPGRPG--------WH 222 (464)
Q Consensus 185 ~~~----------~~~--------k~~~~d~~~w~~------------~~~g~~~~~~----~wg~~~P~--------w~ 222 (464)
++. ... +.++ ++..|.. ..+..++|+. .||+++|. |+
T Consensus 166 ve~~~~~~~f~~l~~~~~~l~~~~~~~~-~~~~P~~~~~~~~~~~~~~l~Dw~ISRq~~~~~~WGipiP~~~~~~~~vw~ 244 (542)
T 3u1f_A 166 VTWVSEENYMFRLSAFRERLLEWYHANP-GCIVPEFRRREVIRAVEKGLPDLSVSRARATLHNWAIPVPGNPDHXVYVWL 244 (542)
T ss_dssp EEEEEEEEEEECGGGGHHHHHHHHHHCT-TSEESHHHHHHHHHHHHHCCCCEECEEEGGGGTTCSCEETTEEEEEECHHH
T ss_pred ceeeccccceecchhHHHHHHHHHhhcc-cccCCchhhHhHhhhhhccccccCccccccCcCCCCCccCCCcCeeeeeee
Confidence 111 000 0011 1111110 1233344443 59999995 76
Q ss_pred hHHHHH-HH-------------------hhcCCCeeEEEecccCccccchHHHHHHhhccCCCCccEEEEeeeeeeCCcc
Q 012397 223 IECSAM-SA-------------------HYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEK 282 (464)
Q Consensus 223 ~~~~~~-~~-------------------~~~~~~~~i~~~G~D~~~~h~~~~~a~~~a~~~~~~~~~~~~~~~v~~~G~K 282 (464)
++.... .. ....+|.|+|++|+|+++||+.+|++++++.+.+++..+ ++|||++.+|+|
T Consensus 245 da~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~~p~d~~~~G~D~~~fh~~~~~a~l~~~g~~~~~~v-~~hg~l~~~G~K 323 (542)
T 3u1f_A 245 DALTNYLTGSRLRVDESGKEVSLVDDFNELERFPADVHVIGKDILKFHAIYWPAFLLSAGLPLPKKI-VAHGWWTKDRKK 323 (542)
T ss_dssp HHHTHHHHHHTEEECTTSCEEEECSSGGGTTCCSCSEEEEEGGGHHHHHTHHHHHHHHHTCCCCSCE-EEECCCEETTBC
T ss_pred ccchhhhhhhhccccccCCcccccchhhhhcCCcceEEEecccccccccchhHHHHHhhccccccee-ccccceecCCce
Confidence 654221 10 112358899999999999999999999998876666655 667999999999
Q ss_pred cccccCCccCHHHHHHhcCchhHHHHHhhc-CCCCccCCCHHHHHHHHHH--HHHHHHHHHHHHHhcCccccC----CCc
Q 012397 283 MSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASDA--VFYIYQTLQDCEVALSPFQEH----GKT 355 (464)
Q Consensus 283 mSks~gn~i~~~dll~~~~~dalR~~ll~~-~~~~~~~f~~~~~~~~~~~--l~~l~~~~~~~~~~l~~~~~~----~~~ 355 (464)
||||+||+|+|.|++++||+|++|||+++. ++++|++|+++.+.+..|. ..+|+|.+.|+.+...+.... ...
T Consensus 324 MSKSlGNvi~p~~~i~~ygaD~lR~~l~~~~~~~~d~~fs~~~~~~~~n~~l~n~l~N~~~r~~~~~~~~~~~~~~~~~~ 403 (542)
T 3u1f_A 324 ISKSLGNVFDPVEKAEEFGYDALKYFLLRESGFSDDGDYSDKNMIARLNGELADTLGNLVMRCTSAKINVNGEWPSPAAY 403 (542)
T ss_dssp CBTTTTBCCCHHHHHHHHCHHHHHHHHHHHCCTTSCCEECHHHHHHHHHHTTTTTHHHHHHHHHCTTTSTTSBCCCCCCC
T ss_pred eccccCCCCChhHHHhhcCchHHHHHHHhcCcccccccccHHHHHHHhhhHHHHHHHHHHHHHHHhhhcccCCCCccchh
Confidence 999999999999999999999999999985 8999999999999887764 456677776766544333211 122
Q ss_pred cCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhcccCchhhhhhHH-HHHHHHHHHHHHHHHh
Q 012397 356 ARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLI-ESLRKIENEVKEVLRI 434 (464)
Q Consensus 356 ~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~~~~~~~~~~~~r~-~~~~~~~~~l~~~l~l 434 (464)
.+.|++++++++++.+++.++| ++++++.|++. |++|++.+|+|++..+||...+++..|+ .++.++.++|+.++.+
T Consensus 404 ~~~d~~il~~l~~~~~~~~~~~-~~~~~~~a~~~-i~~~~~~~n~Y~~~~~pw~l~k~d~~~~~~~l~~~~~~l~~~~~l 481 (542)
T 3u1f_A 404 TEEDESLIQLIKDLPGTADHYY-LIPDIQKAIIA-VFDVLRAINAYVTDMAPWKLVKTDPERLRTVLYITLEGVRVTTLL 481 (542)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHH-HHHHHHHHHHHHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhhhHHHHHHHH-HHHHHHHHHHH-HHHHHHHHHHHHHhcCchhhhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999999 99999999999 9999999999999999997655444444 4568888999999999
Q ss_pred hc-cCCCccHHHHHHHhhhhH
Q 012397 435 LG-LLPPGAYSEVKTAFLVLL 454 (464)
Q Consensus 435 Lg-i~p~~~~e~i~~~l~~~~ 454 (464)
|+ |+|+ +||+||++|+.+.
T Consensus 482 l~P~~P~-~aeei~~~Lg~~~ 501 (542)
T 3u1f_A 482 LSPILPR-KSVVIFDMLGVPE 501 (542)
T ss_dssp HTTTSHH-HHHHHHHHHTCCG
T ss_pred HHhHhHH-HHHHHHHHCCCCC
Confidence 99 9998 9999999998654
No 6
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=100.00 E-value=5.2e-65 Score=537.50 Aligned_cols=413 Identities=19% Similarity=0.177 Sum_probs=311.3
Q ss_pred ecccCCCCcceEEEeCCCCC--CcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHH
Q 012397 31 LFTPIVRGKVGMYVCGVTAY--DLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNR 108 (464)
Q Consensus 31 ~~~~~~~~~~~v~~~~P~p~--G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~ 108 (464)
++.|.+-++..+|+|+|+|| |++||||+|+++++|+++|++|++|++|.+++|+||||.+|+.+|++.|.+|++++++
T Consensus 16 ~~~~~~~~~~~~~i~~p~pypng~lHiGH~r~~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~~g~~~~~~~~~ 95 (536)
T 4dlp_A 16 TQGPGSMSREKYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARKEGITPRDLADR 95 (536)
T ss_dssp --------CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHH
T ss_pred ccCCCcCCCCCEEEeCCCCCCCCCcCcchhHHHHHHHHHHHHHHhcCCcEEEecCcCCcchHHHHHHHHcCCCHHHHHHH
Confidence 34444434557899998888 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCcc--hhHHHHHHHHHHHHHCCceEeecCcEEEcCCC-----------------CCCCC
Q 012397 109 YCQEYLVDMADLQCLPPTYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEK-----------------SPNYG 169 (464)
Q Consensus 109 ~~~~~~~~l~~lgi~~~~~~~r~s--~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~-----------------~~~~g 169 (464)
+.+.|.+++++|||++ |.+.+++ +|.+.+++++.+|.++|++|++++.+|||+.| |+.||
T Consensus 96 ~~~~~~~~l~~lgi~~-d~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~~~~~~~g~~c~~~g 174 (536)
T 4dlp_A 96 NTSAFRRMAEVLNSSN-DDYIRTSEERHYKASQAIWQAMVANGDIYKGGYAGWYSVRDEAYYGEEETEVRADGVRYGPQG 174 (536)
T ss_dssp HHHHHHHHHHHTTCCC-SEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGCEECTTSCEECTTS
T ss_pred HHHHHHHHHHHcCCCC-CcceeCCCHHHHHHHHHHHHHHHHCCCEEEeceeeeecCCcCcccCHHHhhcCCCCCcccCCC
Confidence 9999999999999996 6777777 48999999999999999999999999999864 22333
Q ss_pred CCCCccccccccCCC-cccCCc--------ccCccccc----------cccc--ccCCCCccc-CCCCCCCCc-------
Q 012397 170 RLSGQRLENNRAGER-VAVDSR--------KRNPADFA----------LWKA--AKAGEPSWD-SPWGPGRPG------- 220 (464)
Q Consensus 170 ~l~~~~~~~~~~g~~-~~~~~~--------k~~~~d~~----------~w~~--~~~g~~~~~-~~wg~~~P~------- 220 (464)
. .++....... +.+... +.++ ++. -|.. .++-.++|. .+||+++|.
T Consensus 175 ~----~~e~~~~~~~f~~l~~~~~~l~~~~~~~~-~~i~P~~~~~~~~~~l~~~l~D~~ISR~~~~WGipiP~~~~~v~y 249 (536)
T 4dlp_A 175 T----PVEWVEEESYFFRLSAYQDKLLDLYENNP-GFIMPAERRNEIVSFVKSGLKDLSISRTTFDWGIPVPGDEKHVMY 249 (536)
T ss_dssp S----BCEEEEEEEEEECGGGGHHHHHHHHHHCT-TSEESHHHHHHHHHHHHTCCCCEECEEC--CCSCBCTTCTTSEEC
T ss_pred C----cceEEeccceEEecHHHHHHHHHHHHhCC-CccCcHHHHHHHHHHHhcCCCccCCccCCCcCCeeCCCCCCCceE
Confidence 2 1100000000 000000 0111 111 1211 122235664 579999994
Q ss_pred -hhhHHHHHHH--hh--------cCCCeeEEEecccCccccchHHHHHHhhccCCCCccEEEEeeeeeeCCcccccccCC
Q 012397 221 -WHIECSAMSA--HY--------LSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGN 289 (464)
Q Consensus 221 -w~~~~~~~~~--~~--------~~~~~~i~~~G~D~~~~h~~~~~a~~~a~~~~~~~~~~~~~~~v~~~G~KmSks~gn 289 (464)
|+++...+.. .+ -.+|.+++++|+||++||+.+|++++++++.++|..+++ ||||+++|+|||||+||
T Consensus 250 vWfda~~~y~s~~~~~~~~~~~~~~~p~dv~~~G~D~~~fh~~~~~a~l~a~g~~~~~~v~~-hg~v~~~G~KMSKS~GN 328 (536)
T 4dlp_A 250 VWVDALTNYITALGYPDTTDERWAYWPANAHIIGKDISRFHAVYWPAFLMSAQLPLPKRVFA-HGFLFNRGEKMSKSVGN 328 (536)
T ss_dssp HHHHHHHHHHHTTTTTCTTSGGGGGCSCSEEEEEGGGHHHHHTHHHHHHHHTTCCCCSCEEE-ECCEEC-----------
T ss_pred EeeCCcHHHHHhcCCCCCchHHHhhCCcceEEeechHHHHHHHHHHHHHHHCCCCCCcEEEe-eeeEeeCCceecccCCC
Confidence 8776533311 00 013789999999999999999999999988888888855 59999999999999999
Q ss_pred ccCHHHHHHhcCchhHHHHHhh-cCCCCccCCCHHHHHHHHHH--HHHHHHHHHHHHHhcCccccC-----CCccCCChh
Q 012397 290 FFTIRQITERYHPLALRHFLIS-AHYRSPLNYSVLQLDSASDA--VFYIYQTLQDCEVALSPFQEH-----GKTARINPA 361 (464)
Q Consensus 290 ~i~~~dll~~~~~dalR~~ll~-~~~~~~~~f~~~~~~~~~~~--l~~l~~~~~~~~~~l~~~~~~-----~~~~~~d~~ 361 (464)
+|+|.|++++||+|++|||+++ .++++|++|+++.+.+..|. .++++|+++|+.+.+.+...+ ....+.|++
T Consensus 329 vi~p~d~i~~~GaDalR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~~~~~~~~p~~~~~~~~d~~ 408 (536)
T 4dlp_A 329 VIDPFELVERYGLDQLRYFLMREVPFGQDGSYSHEAIVNRTNADLANDLGNLAQRSLSMIAKNCEGKVPQPGAFSEADKA 408 (536)
T ss_dssp -CCHHHHHHHHCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHSTTBCCCCCCCCHHHHH
T ss_pred CCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccCCHHHHH
Confidence 9999999999999999999999 49999999999999887653 457777777776665433211 122456899
Q ss_pred HHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhcccCchhhh-hhHHHHHHHHHHHHHHHHHhhc-cCC
Q 012397 362 AEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQ-LSLIESLRKIENEVKEVLRILG-LLP 439 (464)
Q Consensus 362 l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~~~~~~~~~~-~~r~~~~~~~~~~l~~~l~lLg-i~p 439 (464)
++.+++++++.+.++| ++++++.|+.. +++|++.+|+|++.++||...+.+ +.+..++.++.++|+.++.+|+ |+|
T Consensus 409 ll~~l~~~~~~v~~a~-~~~~~~~a~~~-l~~l~~~~n~Y~~~~k~w~l~~~~~~~~~~~~~~l~~~l~~~~~lL~P~~P 486 (536)
T 4dlp_A 409 ILDQADAALETARKAM-DDQALHLALGA-IFAVVAEANRYFAGQEPWALRKTDPARMGTVLYVTAEVLRRVGIMVQPFIP 486 (536)
T ss_dssp HHHHHHHHHHHHHHHH-HTTCHHHHHHH-HHHHHHHHHHHHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTSH
T ss_pred HHHHHHHHHHHHHHHH-HccCHHHHHHH-HHHHHHHHHHHHHhCCchhhcCCCHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 9999999999999999 99999999998 999999999999999999754433 3345567899999999999999 999
Q ss_pred CccHHHHHHHhhhh
Q 012397 440 PGAYSEVKTAFLVL 453 (464)
Q Consensus 440 ~~~~e~i~~~l~~~ 453 (464)
+ +||+||++|+..
T Consensus 487 ~-~aeei~~~L~~~ 499 (536)
T 4dlp_A 487 Q-SAEKLLDILAVP 499 (536)
T ss_dssp H-HHHHHHHTTTCC
T ss_pred H-HHHHHHHHcCCC
Confidence 8 999999999875
No 7
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=100.00 E-value=8.2e-65 Score=532.04 Aligned_cols=403 Identities=17% Similarity=0.198 Sum_probs=308.1
Q ss_pred ceEEEeCCCC--CCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 012397 40 VGMYVCGVTA--YDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDM 117 (464)
Q Consensus 40 ~~v~~~~P~p--~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l 117 (464)
..+++|+|+| ||++||||+|+++++|+++|++|++|++|.++.|+|+||.+|+.+|+++|++++++++++.+.|.+++
T Consensus 5 ~~~~i~~p~py~ng~lHiGH~~~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~ 84 (497)
T 2csx_A 5 KKFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEELGISPKELVDRNAERFKKLW 84 (497)
T ss_dssp CEEEEEEEEEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHHHHSSSCHHHHHHHHHHHHHHHH
T ss_pred CcEEEecCCCCCCCccchhhHHHHHHHHHHHHHHHhcCCceeeecccCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 3466666554 59999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCCCCcch--hHHHHHHHHHHHHHCCceEeecCcEEEcCCC--------------CCCCCCCCCcccccccc
Q 012397 118 ADLQCLPPTYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEK--------------SPNYGRLSGQRLENNRA 181 (464)
Q Consensus 118 ~~lgi~~~~~~~r~s~--~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~--------------~~~~g~l~~~~~~~~~~ 181 (464)
++|||++ |.+.++++ |.+.++++|.+|+++|++|+++..++||+.+ |+.||. .++....
T Consensus 85 ~~lgi~~-d~~~~t~~~~~~~~~~~~~~~L~~~G~iY~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~----~~~~~~~ 159 (497)
T 2csx_A 85 EFLKIEY-TKFIRTTDPYHVKFVQKVFEECYKRGDIYLGEYEGWYCVGCEEFKSEAELAEDHTCPIHQK----KCEYIKE 159 (497)
T ss_dssp HHTTCCC-SEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEC-------------------------------------CC
T ss_pred HHhCCcC-CCCccCCCHHHHHHHHHHHHHHHHCCCEEecceeeccCcccCeEccHHHhccCCCCCCCCC----CCeEEec
Confidence 9999985 77778876 9999999999999999999999999998763 444553 1111111
Q ss_pred CCC-cccCCc--------ccCc---------cccccccc--ccCCCCcc---cCCCCCCCC---chhh-----H----HH
Q 012397 182 GER-VAVDSR--------KRNP---------ADFALWKA--AKAGEPSW---DSPWGPGRP---GWHI-----E----CS 226 (464)
Q Consensus 182 g~~-~~~~~~--------k~~~---------~d~~~w~~--~~~g~~~~---~~~wg~~~P---~w~~-----~----~~ 226 (464)
+.. +.+... +.++ ..+.-|.. ..+-.++| +.+||.++| +|++ + |+
T Consensus 160 ~~wf~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~~~Dw~isR~~~~~~WG~~iP~~~~~~i~vW~ds~~~~~s 239 (497)
T 2csx_A 160 PSYFFRLSKYQDKLLELYEKNPEFIQPDYRRNEIISFVKQGLKDLSVTRPRSRVKWGIPVPFDPEHTIYVWFDALFNYIS 239 (497)
T ss_dssp EEEEECTTSSHHHHHHHHHHCTTSBCSHHHHHHHHHHHHHCCCCEECEEETTTCCSSEEETTEEEEEECSHHHHHTHHHH
T ss_pred CceEEEcHHHHHHHHHHHHhCCCeeCcHHHHHHHHHHHhcCCccccccccCCCCCCceecCCCCCceEEEecccchhhcc
Confidence 100 000000 0011 00001111 11222344 668999999 4443 3 34
Q ss_pred HHHH---hhcCCCeeEEEecccCccccchHHHHHHhhccCCCCccEEEEeeeeeeCCcccccccCCccCHHHHHHhcCch
Q 012397 227 AMSA---HYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPL 303 (464)
Q Consensus 227 ~~~~---~~~~~~~~i~~~G~D~~~~h~~~~~a~~~a~~~~~~~~~~~~~~~v~~~G~KmSks~gn~i~~~dll~~~~~d 303 (464)
++.. ++| |+|+|++|+||++||+.+|++++++++.++|..+ +|||||+++|+|||||+||+|+|.|++++||+|
T Consensus 240 ~~~~~~~~~~--p~di~~~G~D~~~~H~~~~~a~l~~~g~~~~~~~-~~~G~v~~~G~KMSKS~GN~i~~~dli~~~g~D 316 (497)
T 2csx_A 240 ALEDKVEIYW--PADLHLVGKDILRFHTVYWPAFLMSLGYELPKKV-FAHGWWTVEGKKMSKTLGNVVDPYEVVQEYGLD 316 (497)
T ss_dssp TTTTTHHHHC--SCSCEEEEGGGHHHHHTHHHHHHHHHTCCCCSCE-EEECCEESSSSBCCTTTTCCCCHHHHHHHHCHH
T ss_pred cCCCcchhhC--CceEEEeecchhHhHHHHHHHHHHHcCCCCCcEE-EECcEEEeCCceeCCcCCCCCCHHHHHHHCCcH
Confidence 3333 456 7899999999999999999999988876666665 678999999999999999999999999999999
Q ss_pred hHHHHHhh-cCCCCccCCCHHHHHHHHHH--HHHHHHHHHHHHHhcCccccCCCccCCChhHHHHHHHHHHHHHHHHhcc
Q 012397 304 ALRHFLIS-AHYRSPLNYSVLQLDSASDA--VFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDD 380 (464)
Q Consensus 304 alR~~ll~-~~~~~~~~f~~~~~~~~~~~--l~~l~~~~~~~~~~l~~~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~ 380 (464)
++|||+++ .++++|++|+++.+.+..+. ..+++|+++|+.+.+.+...+....+.|++++.+++++++.+.++| ++
T Consensus 317 alR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~~~l~n~~~R~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~~~-~~ 395 (497)
T 2csx_A 317 EVRYFLLREVPFGQDGDFSKKAILNRINGELANEIGNLYSRVVNMAHKFLGGEVSGARDEEYAKIAQESIKNYENYM-EK 395 (497)
T ss_dssp HHHHHHHHSSCTTSCEECCHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHSTTCBCCCCCTTHHHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHhcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHH-Hc
Confidence 99999998 58999999999999987664 3466677777766654432222224678999999999999999999 99
Q ss_pred cChHHHHHHHHHHHHHHHHHHhhhhcccCchh-hh-hhHHHHHHHHHHHHHHHHHhhc-cCCCccHHHHHHHhhhh
Q 012397 381 LNTSHILTGAFQDALKFINSSLNMLKKKQPKQ-QQ-LSLIESLRKIENEVKEVLRILG-LLPPGAYSEVKTAFLVL 453 (464)
Q Consensus 381 ~~~~~al~~yl~~l~~~~n~~~~~~~~~~~~~-~~-~~r~~~~~~~~~~l~~~l~lLg-i~p~~~~e~i~~~l~~~ 453 (464)
++++.|++. |+++++.+|+|++.++||...+ .+ +....++.++.++|+.++.+|+ |+|+ +||+||+.|+..
T Consensus 396 ~~~~~a~~~-l~~l~~~~n~y~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ll~P~~P~-~aeei~~~L~~~ 469 (497)
T 2csx_A 396 VNFYKAIEE-ILKFTSYLNKYVDEKQPWALNKERKKEELQKVLYALVDGLFVLTHLLYPITPN-KMKEALQMLGEK 469 (497)
T ss_dssp TCHHHHHHH-HHHHHHHHHHHHHHHCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHTTTSHH-HHHHHHHHTTCS
T ss_pred cCHHHHHHH-HHHHHHHHHHHHHhcCchhhcccccHHHHHHHHHHHHHHHHHHHHHhcCccCH-HHHHHHHHcCCC
Confidence 999999999 9999999999999999985432 12 2233557889999999999999 9999 999999999854
No 8
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=100.00 E-value=8.7e-64 Score=530.80 Aligned_cols=413 Identities=15% Similarity=0.148 Sum_probs=324.6
Q ss_pred cCCCCcceEEEeCCCCC--CcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHH
Q 012397 34 PIVRGKVGMYVCGVTAY--DLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQ 111 (464)
Q Consensus 34 ~~~~~~~~v~~~~P~p~--G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~ 111 (464)
|..++++.+|+|+|+|| |++||||+|+++++|+++|++|++|++|.+++|+||||.+|+.+|++.|++++++++++.+
T Consensus 12 ~~~~~~~~~~v~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~ 91 (560)
T 3h99_A 12 SMTQVAKKILVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQ 91 (560)
T ss_dssp -----CCEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCCCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCeEEEeeeecCcCcHHHHHHHHhCCCHHHHHHHHHH
Confidence 44578889999988777 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCcc--hhHHHHHHHHHHHHHCCceEeecCcEEEcCCC------------CCCCCCC------
Q 012397 112 EYLVDMADLQCLPPTYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEK------------SPNYGRL------ 171 (464)
Q Consensus 112 ~~~~~l~~lgi~~~~~~~r~s--~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~------------~~~~g~l------ 171 (464)
.|.+++++|||++ |.+.+++ +|.+.+++++.+|.++|++|++++.+|||+.+ ||.||..
T Consensus 92 ~~~~~~~~lgi~~-d~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~~~~~~~~~l~~~~v~g~cp~c~~~~~~gd~ 170 (560)
T 3h99_A 92 EHQTDFAGFNISY-DNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSPDQYGDN 170 (560)
T ss_dssp HHHHHHHHTTCCC-SEEEESSSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEEEECTTTCCSSEETTB
T ss_pred HHHHHHHHcCCCC-CCceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEeecCccCceecchhcCCCCCCCCCcccccch
Confidence 9999999999996 6666665 78889999999999999999999999999874 7777642
Q ss_pred --------CCccccccc---cCCCcccCCcc---cCccccc---------------------cccc--ccCCCCcccC-C
Q 012397 172 --------SGQRLENNR---AGERVAVDSRK---RNPADFA---------------------LWKA--AKAGEPSWDS-P 213 (464)
Q Consensus 172 --------~~~~~~~~~---~g~~~~~~~~k---~~~~d~~---------------------~w~~--~~~g~~~~~~-~ 213 (464)
.+.++.+.. +|.++...... -.-.++. -|.. ..+..++|+. .
T Consensus 171 ce~cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~D~~IsR~~~~ 250 (560)
T 3h99_A 171 CEVCGATYSPTELIEPKSVVSGATPVMRDSEHFFFDLPSFSEMLQAWTRSGALQEQVANKMQEWFESGLQQWDISRDAPY 250 (560)
T ss_dssp CTTTCCBCCGGGCEEEEETTTCCCCEEEEEEEEEECGGGGHHHHHHHHHTSCSCHHHHHHHHHHHHHCCCCEECEEESSC
T ss_pred hhhccccCChhhhcCCccccCCCCceEEecceEEEEHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcCCCCCCccccCCc
Confidence 112221111 23322110000 0000000 0111 1222356766 7
Q ss_pred CCCCCC--------chhhHHHHHH----------------HhhcCCCee-----EEEecccCccccchHHHHHHhhccCC
Q 012397 214 WGPGRP--------GWHIECSAMS----------------AHYLSSKFD-----IHGGGIDLIFPHHENEIAQSCAACQD 264 (464)
Q Consensus 214 wg~~~P--------~w~~~~~~~~----------------~~~~~~~~~-----i~~~G~D~~~~h~~~~~a~~~a~~~~ 264 (464)
||+++| .|+++...+. ..+| |.+ +|++|+||++||+.+|++++++++.+
T Consensus 251 WG~~iP~~~~~viyvW~da~~~y~s~~~~~~~~~~~~~~~~~~w--p~~~~~~~~~~~G~D~~~fh~~~~~a~l~~~g~~ 328 (560)
T 3h99_A 251 FGFEIPNAPGKYFYVWLDAPIGLMGSFKNLCDKRGDSVSFDEYW--KKDSTAELYHFIGKDIVYFLSLFWPAMLEGSNFR 328 (560)
T ss_dssp SSCBCTTCTTEEECHHHHHHHHHHHHHHHHHHHHTCSSHHHHHH--BTTCCSEEEEEEEGGGHHHHHTHHHHHHHHTTBC
T ss_pred CCeeCCCCCCceEEeCcccchhHHHHHHHHhhccCChhhHHHhC--cCCCCceeEEEeccccchhHHHHHHHHHHhCCCC
Confidence 899999 4876543221 1223 344 99999999999999999999998877
Q ss_pred CCccEEEEeeeeeeCCcccccccCCccCHHHHHHhcCchhHHHHHhhc-CCC-CccCCCHHHHHHHHH--HHHHHHHHHH
Q 012397 265 SNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYR-SPLNYSVLQLDSASD--AVFYIYQTLQ 340 (464)
Q Consensus 265 ~~~~~~~~~~~v~~~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~-~~~-~~~~f~~~~~~~~~~--~l~~l~~~~~ 340 (464)
.|..+++ ||||+++|+|||||+||+|+|.|++++||+|++|||+++. +.+ +|++|+++.+.+..+ ...+++|.++
T Consensus 329 ~p~~v~~-hg~v~~~G~KMSKS~GNvv~p~d~i~~~GaDalR~~ll~~~~~~~~d~~f~~~~~~~~~~~~l~~~l~n~~~ 407 (560)
T 3h99_A 329 KPSNLFV-HGYVTVNGAKMSKSRGTFIKASTWLNHFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNLAS 407 (560)
T ss_dssp CCSEEEE-ECCEEETTEECCTTTTCCCBHHHHHHHSCHHHHHHHHHHHCCSSCCCEEECHHHHHHHHHHHCCCCCTHHHH
T ss_pred CCcEEEE-EeEEEeCCeeccccCCCcCCHHHHHHHcCcHHHHHHHHHhCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 7777755 6999999999999999999999999999999999999987 556 899999999986543 3556777777
Q ss_pred HHHHhcCccccCC-CccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhcccCchh---hhhh
Q 012397 341 DCEVALSPFQEHG-KTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQ---QQLS 416 (464)
Q Consensus 341 ~~~~~l~~~~~~~-~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~~~~~~~~---~~~~ 416 (464)
|+.+++.+...+. ...+.|++++.+++++++.+.++| ++++++.|+.. +++|++.+|+|++.++||...+ ..+.
T Consensus 408 R~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~-e~~~~~~a~~~-l~~l~~~~n~Yi~~~kpw~l~k~~~~~~~ 485 (560)
T 3h99_A 408 RNAGFINKRFDGVLASELADPQLYKTFTDAAEVIGEAW-ESREFGKAVRE-IMALADLANRYVDEQAPWVVAKQEGRDAD 485 (560)
T ss_dssp TTHHHHHHHSTTBCCSSCSCHHHHHHHHHTHHHHHHHH-HTTCHHHHHHH-HHHHHHHHHHHHHHHCHHHHTTSTTCHHH
T ss_pred HHHHHHHHhcCCCCCCccccHHHHHHHHHHHHHHHHHH-HccCHHHHHHH-HHHHHHHHHHHHHhcCchhhcCCcCcHHH
Confidence 7776665432221 124578999999999999999999 99999999999 9999999999999999985322 2344
Q ss_pred HHHHHHHHHHHHHHHHHhhc-cCCCccHHHHHHHhhhh
Q 012397 417 LIESLRKIENEVKEVLRILG-LLPPGAYSEVKTAFLVL 453 (464)
Q Consensus 417 r~~~~~~~~~~l~~~l~lLg-i~p~~~~e~i~~~l~~~ 453 (464)
+..++.+++++|+.++.+|+ |+|+ +||+||++|+..
T Consensus 486 ~~~~~~~~~~~l~~~~~lL~P~~P~-~aeei~~~L~~~ 522 (560)
T 3h99_A 486 LQAICSMGINLFRVLMTYLKPVLPK-LTERAEAFLNTE 522 (560)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCHH-HHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHhccccH-HHHHHHHHcCCC
Confidence 55667888999999999999 9998 999999999854
No 9
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=100.00 E-value=6e-64 Score=531.10 Aligned_cols=416 Identities=17% Similarity=0.161 Sum_probs=326.4
Q ss_pred eecccCCC-CcceEEEeCCCCC--CcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHH
Q 012397 30 ELFTPIVR-GKVGMYVCGVTAY--DLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLS 106 (464)
Q Consensus 30 ~~~~~~~~-~~~~v~~~~P~p~--G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~ 106 (464)
.+|.|..+ ++..+|+|+|+|| |++||||+|+++++|+++|++|++|++|.+++|+||||++|+.+|+++|++|++++
T Consensus 15 ~~~~~~~~~~~~~~~i~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~dd~G~ki~~~a~~~g~~p~~~~ 94 (564)
T 3kfl_A 15 QTQGPGSMKKQKVFFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAKQGVSPMDFT 94 (564)
T ss_dssp ---------CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHHHTTCCHHHHH
T ss_pred hhcCCccccCCCCEEEeCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCcEEEecCcCCCCcHHHHHHHHcCCCHHHHH
Confidence 45656554 3456777776655 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCcc--hhHHHHHHHHHHHHHCCceEeecCcEEEcCCCCCCCCCCCCccccc------
Q 012397 107 NRYCQEYLVDMADLQCLPPTYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLEN------ 178 (464)
Q Consensus 107 ~~~~~~~~~~l~~lgi~~~~~~~r~s--~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~~g~l~~~~~~~------ 178 (464)
+++.+.|.+++++|||++ |.+.|++ +|.+.+++++++|.++|++|++++++|||+.|... +++.++.+
T Consensus 95 ~~~~~~~~~~~~~lgi~~-D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~---l~~~~~~~~~~~~g 170 (564)
T 3kfl_A 95 TSVSSEFKQCFQEMNYDM-NYFIRTTNPTHEKLVQDIWKKLAAKGDIYLGKYEGWYSVSDESF---LTAQNVADGVDRDG 170 (564)
T ss_dssp HHHHHHHHHHHHHTTCCC-SEEEETTSHHHHHHHHHHHHHHHHHTCEEEEEEEEEEETTTTEE---ECGGGEEEEECTTS
T ss_pred HHHHHHHHHHHHHcCCCC-CccccCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEEecCCcCCC---CCHHHhccCcCCCC
Confidence 999999999999999996 6777777 68999999999999999999999999999874210 11110000
Q ss_pred ------cccCCCccc----------CCc--------ccCccccc----------cccc--ccCCCCcc----cCCCCCCC
Q 012397 179 ------NRAGERVAV----------DSR--------KRNPADFA----------LWKA--AKAGEPSW----DSPWGPGR 218 (464)
Q Consensus 179 ------~~~g~~~~~----------~~~--------k~~~~d~~----------~w~~--~~~g~~~~----~~~wg~~~ 218 (464)
..+|..++. ..+ +.++ ++. -|.. ..+-.++| +..||+++
T Consensus 171 ~~c~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~-~~i~P~~~~~~~~~wl~~gl~D~~ISR~~~~~~~WGipi 249 (564)
T 3kfl_A 171 KPCKVSLESGHVVTWVEEENYMFRLSAFRERLLKYFHDHP-NCIVPEFRRREVIKTVEKGLFDLSISRKRESVMNWSIPV 249 (564)
T ss_dssp CEEEEETTTSCBCEEEEEEEEEECGGGGHHHHHHHHHHCT-TSEESHHHHHHHHHHHHHCCCCEECEEEGGGGTTCSCEE
T ss_pred CEeccccCCCCccEEEecceeEEEHHHHHHHHHHHHHhCC-CccCCHHHHHHHHHHHhCCCCCccccCcCCCCCCCCeec
Confidence 012222211 100 0111 111 1111 12334677 56899999
Q ss_pred Cc--------hhhHHHHHH--Hhh-------------c----CCCeeEEEecccCccccchHHHHHHhhccCCCCccEEE
Q 012397 219 PG--------WHIECSAMS--AHY-------------L----SSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWM 271 (464)
Q Consensus 219 P~--------w~~~~~~~~--~~~-------------~----~~~~~i~~~G~D~~~~h~~~~~a~~~a~~~~~~~~~~~ 271 (464)
|+ |+++...+. ..+ | .+|.++|++|+||++||.++|++++++++.++|.++++
T Consensus 250 P~~~~~v~yVWfDa~~~y~s~~~~~~~~~~~~~~~~~~~~~~~wp~dv~~~GkDii~FH~~~wpa~L~a~g~~~~~~v~~ 329 (564)
T 3kfl_A 250 PGDERHCIYVWLDALFNYYTGALTRVATDGTETLDEDHHALNRWPADVHVVGKDILKFHAIYWPAFLMSAELPLPERLVS 329 (564)
T ss_dssp TTEEEEEECHHHHHHTHHHHHHHEEECTTSCEEECSSSTTTTCCSCSEEEEEGGGHHHHHTHHHHHHHHTTCCCCSCEEE
T ss_pred CCCCCCEEEEeccCcHHHHHHhCccccccccccchhcchhhhcCccceEEEeecccchHHHHHHHHHHhCCCCCCcEEEE
Confidence 94 877642221 011 2 24789999999999999999999999998888888855
Q ss_pred EeeeeeeCCcccccccCCccCHHHHHHhcCchhHHHHHhh-cCCCCccCCCHHHHHHHHH--HHHHHHHHHHHHHHhcCc
Q 012397 272 HNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLIS-AHYRSPLNYSVLQLDSASD--AVFYIYQTLQDCEVALSP 348 (464)
Q Consensus 272 ~~~~v~~~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~-~~~~~~~~f~~~~~~~~~~--~l~~l~~~~~~~~~~l~~ 348 (464)
|||++.+|+|||||+||+|+|.|+++.||+|++|||+++ .++++|++|+++.+.+..| ...+|+|+++|+.+++..
T Consensus 330 -hg~v~~~G~KMSKS~GNvV~p~d~i~~~G~DalR~~ll~~~~~~~D~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~~ 408 (564)
T 3kfl_A 330 -HGWWTKDHKKISKSLGNAFDPVEKAKEFGIDALKYFLMRESNFQDDGDYSDKNMVARLNGELADTLGNLVSRCVAPKIN 408 (564)
T ss_dssp -ECCEEETTEECCTTTTCCCCHHHHHHHHCHHHHHHHHHHHCCSSCCEECCHHHHHHHHHHTTTTTHHHHHHHHHCTTTS
T ss_pred -cccEeeCCccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 699999999999999999999999999999999999999 5999999999999998765 467888988888887653
Q ss_pred cccC----CCccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhcccCchhhhhhH-HHHHHH
Q 012397 349 FQEH----GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSL-IESLRK 423 (464)
Q Consensus 349 ~~~~----~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~~~~~~~~~~~~r-~~~~~~ 423 (464)
.... ....+.|++++.+++++++.+.++| ++++++.|+.. +++|++.+|+|++.++||...+.+..+ ..++..
T Consensus 409 ~~g~~p~~~~~~~~d~~ll~~l~~~~~~v~~a~-e~~~~~~a~~~-i~~l~~~~n~Y~~~~kpW~l~~~~~~~~~~~~~~ 486 (564)
T 3kfl_A 409 VNGMWPEPAEYSESDKTLIASLNNLAGTVDHYY-CLPDIQHALIA-IFDVLRSLNAYVTENAPWKLVKMDTARLGTVLYV 486 (564)
T ss_dssp TTSBCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHH-HHHHHHHHHHHHHHHCHHHHTTTCHHHHHHHHHH
T ss_pred cCCcCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HcccHHHHHHH-HHHHHHHHHHHHHhcCChhhhcCCHHHHHHHHHH
Confidence 2111 1124467899999999999999999 99999999999 999999999999999999754433334 456788
Q ss_pred HHHHHHHHHHhhc-cCCCccHHHHHHHhhhhH
Q 012397 424 IENEVKEVLRILG-LLPPGAYSEVKTAFLVLL 454 (464)
Q Consensus 424 ~~~~l~~~l~lLg-i~p~~~~e~i~~~l~~~~ 454 (464)
+.++++.++.+|+ |+|+ +||+||++|+...
T Consensus 487 l~~~l~~l~~lL~P~~P~-~ae~i~~~Lg~~~ 517 (564)
T 3kfl_A 487 TMEGLRICTMFLQPVMPQ-KAKEIMDALGVPE 517 (564)
T ss_dssp HHHHHHHHHHHHTTTSHH-HHHHHHHHHTCCG
T ss_pred HHHHHHHHHHHHHhHhhH-HHHHHHHHcCCCc
Confidence 9999999999999 9998 9999999998754
No 10
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=100.00 E-value=7.3e-63 Score=534.81 Aligned_cols=410 Identities=15% Similarity=0.131 Sum_probs=318.9
Q ss_pred cceEEEeCCCCCCcCCcccchh-HHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 012397 39 KVGMYVCGVTAYDLSHLGHARA-AVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDM 117 (464)
Q Consensus 39 ~~~v~~~~P~p~G~lHiGHar~-~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l 117 (464)
+..|.++.|+|||.+||||+++ ++++|+++|++|++|++|.|++|+|+||++|+.+|+++|++|++++++|.+.|.+++
T Consensus 3 ~~~itt~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k~G~~p~e~~~~~~~~~~~~~ 82 (722)
T 1rqg_A 3 RYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKITF 82 (722)
T ss_dssp EEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CEEEecCCCCCCCchhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 4456666788889999999998 999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCCCCcc--hhHHHHHHHHHHHHHCCceEeecCcEEEcCCC------------CCCCCCC------------
Q 012397 118 ADLQCLPPTYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEK------------SPNYGRL------------ 171 (464)
Q Consensus 118 ~~lgi~~~~~~~r~s--~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~------------~~~~g~l------------ 171 (464)
++|||++ |.+.||+ +|.+.++++|.+|+++|++|++.++++||+.| ||.||.-
T Consensus 83 ~~lgis~-D~~~rT~d~~~~~~v~~~f~~L~~kG~iY~~~~~v~y~~~~~tfl~d~~v~gtcP~c~~~~~~Gd~c~~~G~ 161 (722)
T 1rqg_A 83 QRAKISF-DFFGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAYCEHDKMFLPDRFVIGTCPYCGAEDQKGDQCEVCGR 161 (722)
T ss_dssp HHHTCCC-SEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEBTTTTBCCCGGGCCSBCSSSCCSCCCTTTCSSSCC
T ss_pred HHhCCCC-CCCeeCCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCCCCcCcchhhcccccCccCCccCCcchhhhccc
Confidence 9999985 7788877 58899999999999999999999999999875 6766641
Q ss_pred --CCcccccc---ccCCCcccCC----------cccCccccc---ccccc---------cCCC----CcccCCCCCCCCc
Q 012397 172 --SGQRLENN---RAGERVAVDS----------RKRNPADFA---LWKAA---------KAGE----PSWDSPWGPGRPG 220 (464)
Q Consensus 172 --~~~~~~~~---~~g~~~~~~~----------~k~~~~d~~---~w~~~---------~~g~----~~~~~~wg~~~P~ 220 (464)
++.++... ++|..++... ++....++. .|... +.|. ++|+.+||+++|.
T Consensus 162 ~l~~~~l~~p~~~r~g~~v~~~~~~qwF~~l~~~~~~l~~~~~~~~wp~~~~~~~~~wl~~gl~dw~ISR~~~WG~piP~ 241 (722)
T 1rqg_A 162 PLTPEILINPRCAICGRPISFRDSAHYYIKMQDFAERLKRWIEKQPWKPNVKNMVLSWIEEGLEERAITRDLNWGIPVPL 241 (722)
T ss_dssp CCCTTSSBSCBCTTTCCBCEEEEEEEEEECGGGTHHHHHHHHHSSCCCHHHHHHHHHHHTTCCCCEECEECCSSSCBCSC
T ss_pred ccChhhccCCcccCCCcEeEEEEeccEEEEhHHHHHHHHHHHHhCCCCHHHHHHHHHHHHCCCcccceeccccCccccCc
Confidence 11111111 1233322110 000000000 13221 2343 4568899999994
Q ss_pred ------------hhhHH---HHHH-------------HhhcC--C--CeeEEEecccCccccchHHHHHHhhcc------
Q 012397 221 ------------WHIEC---SAMS-------------AHYLS--S--KFDIHGGGIDLIFPHHENEIAQSCAAC------ 262 (464)
Q Consensus 221 ------------w~~~~---~~~~-------------~~~~~--~--~~~i~~~G~D~~~~h~~~~~a~~~a~~------ 262 (464)
|++++ .... ..||. . ..++|++|+|+++||..+||+++++++
T Consensus 242 ~~~g~~~~~iyvW~da~i~y~~~~~~~~~~~g~~~~~~~~w~~pd~~~~~~h~~GkDii~fH~~~wpA~l~~~~~~l~~d 321 (722)
T 1rqg_A 242 DEEDMKGKVLYVWFEAPIGYISITIEHFKRIGKPNEWKKYWLNIDGQTRVIHFIGKDNIPFHAIFWPAFLMAYGKYKDEE 321 (722)
T ss_dssp CCSSSTTCEECHHHHGGGHHHHHHHHHHHHTTCTTTTHHHHBCSSCCEEEEEEEEGGGHHHHHTHHHHHHHTTCCBCSSS
T ss_pred cccCCCCCEEEEEeccccchhhhHHHHHhhcCCchHHHhccCCCCCCCeeEEEccccccccchhhhHHHHhccCCCcccc
Confidence 44332 1111 23564 2 245899999999999999999998875
Q ss_pred ----CCCCccEEEEeeeeeeCCcccccccCCccCHHHHHHhcCchhHHHHHhhc-CCCCccCCCHHHHHHHHHH--HHHH
Q 012397 263 ----QDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASDA--VFYI 335 (464)
Q Consensus 263 ----~~~~~~~~~~~~~v~~~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~-~~~~~~~f~~~~~~~~~~~--l~~l 335 (464)
.+.|.++ ++|||++++|+|||||+||+|+|.|+++.||+|++|||+++. ++++|++|+++.+.+..|. ++++
T Consensus 322 ~~rg~~~Pk~v-~~hG~v~~~G~KMSKS~GNvV~p~d~i~~ygaDalR~~ll~~~~~~~D~~fs~~~~~~~~n~~l~~~l 400 (722)
T 1rqg_A 322 VEAEWNLPYDI-PANEYLTLEGKKFSTSRNWAIWVHEFLDVFPADYLRYYLTTIMPETRDSDFSFSDFKVRINEELVNNL 400 (722)
T ss_dssp CCBCBCCCSBC-CEECCEEETTEECBTTTTBSCBHHHHTTTSCHHHHHHHHHHTCCSSSCEEECHHHHHHHHHHTTTTTH
T ss_pred cccCCCCCCEE-EEeeeEEeCCeeeeeeCCCcCCHHHHHHhcCchHHHHHHHhcCCCCCCCccCHHHHHHHHHHHHHHHH
Confidence 2445444 778999999999999999999999999999999999999997 9999999999999987663 3344
Q ss_pred HHHHHHHHHhcCccccC-----CCccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhcccCc
Q 012397 336 YQTLQDCEVALSPFQEH-----GKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQP 410 (464)
Q Consensus 336 ~~~~~~~~~~l~~~~~~-----~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~~~~~~ 410 (464)
.|.+.|+.+++.+..++ ....+.|++++.+++++.+.+.++| ++++++.|+.. +++|++.+|+|++..+||..
T Consensus 401 ~N~~~R~~~~~~k~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~-e~~~f~~A~~~-i~~~~~~~n~Yi~~~kpw~~ 478 (722)
T 1rqg_A 401 GNFVHRALTFVNRYFDGVVPERGELDELDREALEEIEKAFKEVGELI-MNYRFKDALKR-VMSLASFGNRYFDHKQPWKT 478 (722)
T ss_dssp HHHHHHHHHHHHHHSTTBCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHH-HHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHH-HHHHHHHHHHHHHhcCchhh
Confidence 44444444443322111 1123457899999999999999999 99999999999 99999999999999999975
Q ss_pred hhhhhhHH-HHHHHHHHHHHHHHHhhc-cCCCccHHHHHHHhhhh
Q 012397 411 KQQQLSLI-ESLRKIENEVKEVLRILG-LLPPGAYSEVKTAFLVL 453 (464)
Q Consensus 411 ~~~~~~r~-~~~~~~~~~l~~~l~lLg-i~p~~~~e~i~~~l~~~ 453 (464)
.+.+..++ .++..++++++.++.+|. |+|+ +||+||++|+..
T Consensus 479 ~k~~~~~~~~vl~~l~~~l~~l~~lL~P~~P~-~aeei~~~L~~~ 522 (722)
T 1rqg_A 479 AKEDKVRTGTTVNISLQIVKALGILLEPFLPD-ASEKIWHLLNLD 522 (722)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHHHHHTTTCHH-HHHHHHHHTTCC
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHhhccccH-HHHHHHHHcCCC
Confidence 43333333 456788999999999999 9999 999999999853
No 11
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=100.00 E-value=2.3e-63 Score=521.75 Aligned_cols=401 Identities=19% Similarity=0.201 Sum_probs=310.3
Q ss_pred eEEEeCCCC--CCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Q 012397 41 GMYVCGVTA--YDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMA 118 (464)
Q Consensus 41 ~v~~~~P~p--~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~ 118 (464)
.+++|+|+| ||++||||+|+++++|+++|++|++|++|.++.|+|+||.+|+.+|+++|++++++++++.+.|.++++
T Consensus 4 ~~~i~~p~py~~g~lHiGH~r~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 83 (500)
T 2d5b_A 4 VFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKRAWD 83 (500)
T ss_dssp EEEEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred cEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCceeeecccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 467776666 599999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCCCcch--hHHHHHHHHHHHHHCCceEeecCcEEEcCCC-------------CCCCCCCCCccccccccCC
Q 012397 119 DLQCLPPTYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEK-------------SPNYGRLSGQRLENNRAGE 183 (464)
Q Consensus 119 ~lgi~~~~~~~r~s~--~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~-------------~~~~g~l~~~~~~~~~~g~ 183 (464)
+|||++ |.+.++++ |.+.+++++.+|.++|++|++++.++||+.+ |+.||. .++....+.
T Consensus 84 ~lgi~~-d~~~~t~~~~~~~~~~~~~~~L~~~G~iy~~~~~~~~~~~~~~~~~~~~l~~g~c~~~~~----~v~~~~~~~ 158 (500)
T 2d5b_A 84 LLGIAY-DDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCERFYTEKELVEGLCPIHGR----PVERRKEGN 158 (500)
T ss_dssp HTTCCC-SEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTTSBTTBCTTTCS----BCEEEEEEE
T ss_pred HhCCcC-CCCcccCCHHHHHHHHHHHHHHHHCCCEEecceEEecCCCcCcccCchhccCCcCCCCCC----eeeEEecCc
Confidence 999985 77778875 8999999999999999999999999998764 344443 111111110
Q ss_pred C-cccCC--------cccCccccccccc------------ccCCCCcc---cCCCCCCCCc--------hhhHHHHH---
Q 012397 184 R-VAVDS--------RKRNPADFALWKA------------AKAGEPSW---DSPWGPGRPG--------WHIECSAM--- 228 (464)
Q Consensus 184 ~-~~~~~--------~k~~~~d~~~w~~------------~~~g~~~~---~~~wg~~~P~--------w~~~~~~~--- 228 (464)
. +.+.. .+.++ ++..+.. .++-.++| +.+||.++|. |+.+....
T Consensus 159 wf~~l~~~~~~l~~~~~~~~-~~~~p~~~~~~~~~~l~~~l~Dw~iSRp~~~~~WG~piP~~~~~v~~vWfds~~~y~~~ 237 (500)
T 2d5b_A 159 YFFRMEKYRPWLQEYIQENP-DLIRPEGYRNEVLAMLAEPIGDLSISRPKSRVPWGIPLPWDENHVTFVWFDALLNYVSA 237 (500)
T ss_dssp EEECGGGGHHHHHHHHHTCT-TSEESHHHHHHHHHHHTSCCCCEECEEETTTCCSSCEETTEEEEEECHHHHHHTHHHHT
T ss_pred eEEEcHHHHHHHHHHHHhCC-CeeCCHHHHHHHHHHHhcCCCCeecccccccccCccccCCCCCCeeEEccccchhhHHH
Confidence 0 00000 01111 2222211 01222455 5589999992 54432111
Q ss_pred --------HHhhcCCCeeEEEecccCccccchHHHHHHhhccCCCCccEEEEeeeeee-CCcccccccCCccCHHHHHHh
Q 012397 229 --------SAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITER 299 (464)
Q Consensus 229 --------~~~~~~~~~~i~~~G~D~~~~h~~~~~a~~~a~~~~~~~~~~~~~~~v~~-~G~KmSks~gn~i~~~dll~~ 299 (464)
...+| +.|+|++|+||++||+++|++++++++.++|..+ +|||||++ +|+|||||+||+|+|.|++++
T Consensus 238 ~g~~~~~~~~~~~--p~di~~~G~D~~~fh~~~~~a~~~~~g~~~~~~v-~~~G~v~~~~G~KMSKS~GN~i~p~d~i~~ 314 (500)
T 2d5b_A 238 LDYPEGEAYRTFW--PHAWHLIGKDILKPHAVFWPTMLKAAGIPMYRHL-NVGGFLLGPDGRKMSKTLGNVVDPFALLEK 314 (500)
T ss_dssp TTTTTCHHHHHHG--GGEEEEEEGGGHHHHHTHHHHHHHHHTCCCCSEE-EEECCEECTTSSCCCTTTTCCCCHHHHHHH
T ss_pred cCCCCCchHHHcC--CCeEEEEeechhhhHHHHHHHHHHHcCCCCCcEE-EECceEEeCCCCcccccCCCCCCHHHHHHh
Confidence 22344 6799999999999999999999988876555555 77899999 999999999999999999999
Q ss_pred cCchhHHHHHhh-cCCCCccCCCHHHHHHHHHH--HHHHHHHHHHHHHhcCccccCCCccCCChhHHHHHHHHHHHHHHH
Q 012397 300 YHPLALRHFLIS-AHYRSPLNYSVLQLDSASDA--VFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHAR 376 (464)
Q Consensus 300 ~~~dalR~~ll~-~~~~~~~~f~~~~~~~~~~~--l~~l~~~~~~~~~~l~~~~~~~~~~~~d~~l~~~l~~~~~~v~~~ 376 (464)
||+|++|||+++ .++++|++|+++.+.+..+. ...++|.+.|+.+.+.+...+....+.+++++.+++++++.+.++
T Consensus 315 ~g~DalR~~ll~~~~~~~d~~fs~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~a 394 (500)
T 2d5b_A 315 YGRDALRYYLLREIPYGQDTPVSEEALRTRYEADLADDLGNLVQRTRAMLFRFAEGRIPEPVAGEELAEGTGLAGRLRPL 394 (500)
T ss_dssp HCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHSTTBCCCCCCCGGGGGGGGHHHHHHHH
T ss_pred cCcHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 999999999998 59999999999999887653 223344444444433222111111223589999999999999999
Q ss_pred HhcccChHHHHHHHHHHHHHHHHHHhhhhcccCchhhhhhHH-HHHHHHHHHHHHHHHhhc-cCCCccHHHHHHHhhhh
Q 012397 377 MSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLI-ESLRKIENEVKEVLRILG-LLPPGAYSEVKTAFLVL 453 (464)
Q Consensus 377 ~~~~~~~~~al~~yl~~l~~~~n~~~~~~~~~~~~~~~~~r~-~~~~~~~~~l~~~l~lLg-i~p~~~~e~i~~~l~~~ 453 (464)
| ++++++.|+.. |+++++.+|+|++.++||...+.+..|+ .++.++.++++.++.+|+ |+|+ +||+||+.|+..
T Consensus 395 ~-~~~~~~~a~~~-l~~l~~~~n~y~~~~k~w~~~~~~~~~~~~~~~~l~~~l~~~~~ll~P~~P~-~aeei~~~l~~~ 470 (500)
T 2d5b_A 395 V-RELKFHVALEE-AMAYVKALNRYINEKKPWELFKKEPEEARAVLYRVVEGLRIASILLTPAMPD-KMAELRRALGLK 470 (500)
T ss_dssp H-HTTCHHHHHHH-HHHHHHHHHHHHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTSHH-HHHHHHHHTTCC
T ss_pred H-HccCHHHHHHH-HHHHHHHHHHHHHhcCchhhccCcHHHHHHHHHHHHHHHHHHHHHhhCcccH-HHHHHHHHcCCC
Confidence 9 99999999999 9999999999999999996433322333 467888999999999999 9999 999999999864
No 12
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=100.00 E-value=8.2e-63 Score=520.09 Aligned_cols=405 Identities=17% Similarity=0.172 Sum_probs=311.7
Q ss_pred CCcceEEEeC--CCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHH
Q 012397 37 RGKVGMYVCG--VTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYL 114 (464)
Q Consensus 37 ~~~~~v~~~~--P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~ 114 (464)
.|+..+++++ |+|||++||||+|+++++|+++|++|++|++|.++.|+|+||.+|+.+|+++|++++++++++.+.|.
T Consensus 9 ~~~~~~~i~t~~P~~ng~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~ 88 (524)
T 2x1l_A 9 GGSEPFYITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAKEGIPAAELARRNSDVFQ 88 (524)
T ss_dssp --CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCCEEEeeCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3444455554 66679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCCCcch--hHHHHHHHHHHHHHCCceEeecCcEEEcCCC-----------------CC-CCCCCCCc
Q 012397 115 VDMADLQCLPPTYQPRVSD--HMEQIKDMITQIINNDCAYVVEGDVFFAVEK-----------------SP-NYGRLSGQ 174 (464)
Q Consensus 115 ~~l~~lgi~~~~~~~r~s~--~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~-----------------~~-~~g~l~~~ 174 (464)
+++++|||++ |.+.|+++ |.+.++++|.+|+++|++|++++.+|||+.+ |+ .||.
T Consensus 89 ~~~~~lgi~~-d~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~v~~~~~~~t~l~~~ev~~g~~G~~c~~~~g~---- 163 (524)
T 2x1l_A 89 RLQEKLNISF-DRFIRTSDADHYEASKAIWKRMADAGDIYLDAYKGWYSIRDERFFTENETTEQPDGTRIATETGA---- 163 (524)
T ss_dssp HHHHHTTCCC-SEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEECTTSCEEETTTCC----
T ss_pred HHHHHcCCcC-CCCeecCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeccCccCccccHHHhccCCCCCccccccCC----
Confidence 9999999985 77888886 9999999999999999999999999999875 11 2331
Q ss_pred cccccccCCC-cccCCc--------ccCccccc----------ccc--cccCCCCccc-CCCCCCCCc--------hhhH
Q 012397 175 RLENNRAGER-VAVDSR--------KRNPADFA----------LWK--AAKAGEPSWD-SPWGPGRPG--------WHIE 224 (464)
Q Consensus 175 ~~~~~~~g~~-~~~~~~--------k~~~~d~~----------~w~--~~~~g~~~~~-~~wg~~~P~--------w~~~ 224 (464)
.++.....+. +.+..+ +.++ ++. -|. ..++..++|+ .+||.++|. |+.+
T Consensus 164 ~v~~~~~~qwF~~l~~~~~~l~~~~~~~~-~~i~p~~~~~~~~~~~~~~l~Dw~iSRqr~~WG~~iP~~~~~~~yvWfds 242 (524)
T 2x1l_A 164 PVTWTEEQTYFFRLSAYTDRLLALYEEHP-EFIGPDARRNEIVSFVSGGLKDLSISRTTFDWGVPVPDHPDHVMYVWVDA 242 (524)
T ss_dssp BEEEEEEEEEEECGGGSHHHHHHHHHHCG-GGEESHHHHHHHHHHHTTCCCCEECEESSCCSSCEETTEEEEEECHHHHH
T ss_pred cceEEecCCeEeeHHHHHHHHHHHHHhCC-CeeCCHHHHHHHHHHHHcCCcccceECCCCCcCccCCCCCCCEEEEecCC
Confidence 1111000000 000000 0010 100 011 1223344555 369999882 6544
Q ss_pred HHH-------------HHHhhcCCCeeEEEecccCccccchHHHHHHhhccCCCCccEEEEeeeeeeCCcccccccCCcc
Q 012397 225 CSA-------------MSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFF 291 (464)
Q Consensus 225 ~~~-------------~~~~~~~~~~~i~~~G~D~~~~h~~~~~a~~~a~~~~~~~~~~~~~~~v~~~G~KmSks~gn~i 291 (464)
... +...+| |.|+|++|+|+++||+++|++++++.+.++|.++++| |||+++|+|||||+||+|
T Consensus 243 ~~~~~~~~g~p~~~~~~~~~~~--p~di~~~G~D~~~fh~~~~~a~l~~~g~~~~~~v~~h-G~v~~~G~KMSKS~GN~v 319 (524)
T 2x1l_A 243 LTNYLTGVGFPDTESESFRRYW--PADLHMIGKDIIRFHTVYWPAFLMSAGLPLPKRIFAH-GWLLNRGEKMSKSIGNVV 319 (524)
T ss_dssp HTHHHHTTTTTCTTSHHHHHHC--SCSEEEEEGGGHHHHHTHHHHHHHHHTCCCCSCEEEE-CCEEECSCSEETTTEESS
T ss_pred chHHHHHcCCCCCchHHHHhhC--CCeEEEEeechhHhHHHHHHHHHHHCCCCCCcEEEEC-cEEEeCCcccCCcCCCCC
Confidence 321 222344 6899999999999999999999998887777788664 999999999999999999
Q ss_pred CHHHHHHhcCchhHHHHHhh-cCCCCccCCCHHHHHHHHHH--HHHHHHHHHHHHHhcCcccc-----CCCccCCChhHH
Q 012397 292 TIRQITERYHPLALRHFLIS-AHYRSPLNYSVLQLDSASDA--VFYIYQTLQDCEVALSPFQE-----HGKTARINPAAE 363 (464)
Q Consensus 292 ~~~dll~~~~~dalR~~ll~-~~~~~~~~f~~~~~~~~~~~--l~~l~~~~~~~~~~l~~~~~-----~~~~~~~d~~l~ 363 (464)
+|.|++++||+|++|||+++ .++++|++|+++.+.+..+. ..+|+|.+.|+.+.+.+... .....+.|++++
T Consensus 320 ~p~d~i~~~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~n~l~n~~~r~~~~~~~~~~~~~~~~~~~~~~d~~l~ 399 (524)
T 2x1l_A 320 DPVNLVDTFGLDQVRYFLLREVPFGQDGSYNEDAIIGRVNADLANELGNLAQRSLSMVAKNLGAAVPDPGEFTDEDTALL 399 (524)
T ss_dssp CHHHHHHHHCHHHHHHHHHHHSCTTSCEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHSTTBCCCCCCCCHHHHHHH
T ss_pred CHHHHHHHcChHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccchhHHHHH
Confidence 99999999999999999998 58999999999999988764 22233333443333222111 111244678999
Q ss_pred HHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhcccCchhh----h-hhHHHHHHHHHHHHHHHHHhhc-c
Q 012397 364 DCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQ----Q-LSLIESLRKIENEVKEVLRILG-L 437 (464)
Q Consensus 364 ~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~~~~~~~~~----~-~~r~~~~~~~~~~l~~~l~lLg-i 437 (464)
.+++++++.+.++| ++++++.|+.. |++|++.+|+|++.++||...+. + +....++.++.++++.++.+|. |
T Consensus 400 ~~l~~~~~~v~~a~-~~~~~~~a~~~-l~~l~~~~n~y~~~~k~w~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~ll~P~ 477 (524)
T 2x1l_A 400 AAADALLERVREHF-DVPAMHLALEA-IWSVLGAANRYFSAQEPWVLRKSDAAEDQQRFRTVLYTTLEVVRIASLLLQPV 477 (524)
T ss_dssp HHHHTHHHHHHHHH-HTTCHHHHHHH-HHHHHHHHHHHHHHHCHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHH-HcCCHHHHHHH-HHHHHHHHHHHHHhcCChhhhcCccccCHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999 99999999999 99999999999999999854321 2 2233456788999999999999 9
Q ss_pred CCCccHHHHHHHhhhh
Q 012397 438 LPPGAYSEVKTAFLVL 453 (464)
Q Consensus 438 ~p~~~~e~i~~~l~~~ 453 (464)
+|+ +||+||+.|+..
T Consensus 478 ~P~-~aeei~~~L~~~ 492 (524)
T 2x1l_A 478 MPE-STAKLLDLLGQP 492 (524)
T ss_dssp CHH-HHHHHHHHTTCC
T ss_pred hhH-HHHHHHHHcCCC
Confidence 999 999999999864
No 13
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=100.00 E-value=5.3e-54 Score=470.95 Aligned_cols=417 Identities=17% Similarity=0.162 Sum_probs=314.3
Q ss_pred CcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHH----cCCCh-----------
Q 012397 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRAND----LGENP----------- 102 (464)
Q Consensus 38 ~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~----~g~~~----------- 102 (464)
++..|+.++|+|||.|||||+++.+++|+++|+.|++|++|.++.|+|+||.+++.++++ .|+++
T Consensus 34 ~~f~i~~ppPy~nG~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~~g~~~~~~~~~~f~~~ 113 (862)
T 1gax_A 34 PPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLKEGKTRHDLGREKFLER 113 (862)
T ss_dssp CEEEEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEBCCTHHHHHHHHTTTTTTTSCCSCCCTTHHHHH
T ss_pred CcEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHhCCCccccccccCCCCcHHHHHHHHHHHHcCCChHHcCHHHHHHH
Confidence 455666667888899999999999999999999999999999999999999999887763 46654
Q ss_pred -HHHHHHHHHHHHHHHHhcCCCCCC---CCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCCC-------------
Q 012397 103 -LSLSNRYCQEYLVDMADLQCLPPT---YQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS------------- 165 (464)
Q Consensus 103 -~~~~~~~~~~~~~~l~~lgi~~~~---~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~------------- 165 (464)
++++++|.+.+.+.+++||++.+- .++...+|.+.++++|.+|+++|+||++...++||+.|.
T Consensus 114 ~~~~~~~~~~~~~~q~~rlG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~~kGliYrg~~~v~wcp~~~T~Lsd~EV~~~e~ 193 (862)
T 1gax_A 114 VWQWKEESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYYHEGLAYRAPRLVNWCPRCETTLSDLEVETEPT 193 (862)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHHTTSSEEEECCEEEEETTTTEEECGGGEEECCE
T ss_pred HHHHHHHHHHHHHHHHHHhCccccCCCCcccCCHHHHHHHHHHHHHHHHCCCEEecccccccCCCcCccccccccccccc
Confidence 477999999999999999999631 122233788999999999999999999999999998751
Q ss_pred ----------------------------------------------------CCCCCCCCcccc---ccccCC-------
Q 012397 166 ----------------------------------------------------PNYGRLSGQRLE---NNRAGE------- 183 (464)
Q Consensus 166 ----------------------------------------------------~~~g~l~~~~~~---~~~~g~------- 183 (464)
|.||+-.+.... +...|+
T Consensus 194 ~g~~~~v~f~~~~~~~l~v~TTrPeTl~g~~avav~P~~~ry~~l~G~~~~~P~~~~~ipii~~~~V~~~~GTG~V~~~P 273 (862)
T 1gax_A 194 PGKLYTLRYEVEGGGFIEIATVRPETVFADQAIAVHPEDERYRHLLGKRARIPLTEVWIPILADPAVEKDFGTGALKVTP 273 (862)
T ss_dssp EEEEEEEECCCSSSCCCEEEESCSGGGTTCCCEEECSSCCTTCSCTTCCCBCTTCCCBCCEEECTTCCTTSSSSEEECCG
T ss_pred cceEEEEEEEecCCCEEEEEeCCccccccceEEEECCCccHHHHHcCCEEECCCCCCeeeEEeccccccCCCCcceEecC
Confidence 111110000000 000000
Q ss_pred --------------------------Ccc------cC-------------------------Cc---------ccCc---
Q 012397 184 --------------------------RVA------VD-------------------------SR---------KRNP--- 194 (464)
Q Consensus 184 --------------------------~~~------~~-------------------------~~---------k~~~--- 194 (464)
-.+ +. .+ ...|
T Consensus 274 ahd~~D~~~~~~~~L~~~~~id~~G~~~~~~~~g~~~Gl~~~~a~~~iv~~L~~~g~l~~~~~~~h~~p~c~R~~~~i~~ 353 (862)
T 1gax_A 274 AHDPLDYEIGERHGLKPVSVINLEGRMEGERVPEALRGLDRFEARRKAVELFREAGHLVKEEDYTIALATCSRCGTPIEY 353 (862)
T ss_dssp GGCHHHHHHHHHTTCCCCCSBCTTSBBCSSSSCTTTSSSBSSHHHHHHHHHHHTTTCEEEEEEEEECCEEETTTCSBCCE
T ss_pred CCCchHHHHHHHcCCCccceeCCCCccccccCCcccCCcCHHHHHHHHHHHHHhCCCeeeeccccccCCeecCCCCeEEE
Confidence 000 00 00 0000
Q ss_pred ----c-------------------c-----------ccccc-cccCCCCcccCCCCCCCCchhhH-HH-----H------
Q 012397 195 ----A-------------------D-----------FALWK-AAKAGEPSWDSPWGPGRPGWHIE-CS-----A------ 227 (464)
Q Consensus 195 ----~-------------------d-----------~~~w~-~~~~g~~~~~~~wg~~~P~w~~~-~~-----~------ 227 (464)
. . +.-|. ...+..++|+..||.++|.|+.+ |. .
T Consensus 354 ~~~~qWFv~~~~~~~~~l~~v~~~~~~~~P~~~~~~~~~wl~~l~DW~ISRqr~WG~pIP~w~~~~~~~i~v~~~~~l~~ 433 (862)
T 1gax_A 354 AIFPQWWLRMRPLAEEVLKGLRRGDIAFVPERWKKVNMDWLENVKDWNISRQLWWGHQIPAWYCEDCQAVNVPRPERYLE 433 (862)
T ss_dssp EECCEEEECHHHHHHHHHHHHHHTCCEESSSHHHHHHHHHHHTCCCCCCBCCCSSSCCCCCEEETTTCCEECCCGGGTTC
T ss_pred EecceEEEEhHHHHHHHHHHHHcCCceEcCHHHHHHHHHHHhcccceeEecccCCCcccCceecCCCCEEEEeccccccc
Confidence 0 0 00000 11234567788999999987542 10 0
Q ss_pred ------------H------------H--Hh--hcC-----------CCeeEEEecccCccccchHHHHHHhhccCC-CCc
Q 012397 228 ------------M------------S--AH--YLS-----------SKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNV 267 (464)
Q Consensus 228 ------------~------------~--~~--~~~-----------~~~~i~~~G~D~~~~h~~~~~a~~~a~~~~-~~~ 267 (464)
+ + +. .++ +|.|++++|+|++++|+....++..++.+. ||.
T Consensus 434 ~~~~~~~~g~~~~~r~~DvlDtWfdS~~~~~~~~~~p~~~~~~~~~~P~d~~v~G~Dii~~W~a~~~~~~~~~~g~~Pfk 513 (862)
T 1gax_A 434 DPTSCEACGSPRLKRDEDVFDTWFSSALWPLSTLGWPEETEDLKAFYPGDVLVTGYDILFLWVSRMEVSGYHFMGERPFK 513 (862)
T ss_dssp CCCSCTTTCCSCEEECCCCBCHHHHHTSCTTGGGTTTSCCHHHHHSCSBSCEEEEGGGTTTTHHHHHHHHHHHSSSCSBS
T ss_pred cchhhhhcCchheecCCcccceeeccCCcchhhccCCCchHHHHhhCCceEEecCccccccHHHHHHHHHHHhcCCCccc
Confidence 0 0 00 011 478999999999999987777776665554 668
Q ss_pred cEEEEeeeeee-CCcccccccCCccCHHHHHHhcCchhHHHHHhhc-CCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 012397 268 SYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVA 345 (464)
Q Consensus 268 ~~~~~~~~v~~-~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~-~~~~~~~f~~~~~~~~~~~l~~l~~~~~~~~~~ 345 (464)
++++ ||+++. +|+|||||+||+|+|.|++++||+|++|||+++. ++++|++|+++.+.+..+.+.+++|+++++...
T Consensus 514 ~v~~-hG~vld~~G~KMSKSlGNvIdP~dli~~yGaDalR~~ll~~~~~~~D~~fs~~~l~~~~~f~nkl~N~~rf~~~~ 592 (862)
T 1gax_A 514 TVLL-HGLVLDEKGQKMSKSKGNVIDPLEMVERYGADALRFALIYLATGGQDIRLDLRWLEMARNFANKLYNAARFVLLS 592 (862)
T ss_dssp EEEE-ECCEECTTSCBCCTTTTCCCCHHHHHHHHCHHHHHHHHHHHCCTTCCEECCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEE-eeeEEcCCCCCccccCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8876 589985 9999999999999999999999999999999986 899999999999999999999999998777665
Q ss_pred cCcccc-CCCccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHH--HHHHHhhhhcccCchhhhhhHHHHHH
Q 012397 346 LSPFQE-HGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALK--FINSSLNMLKKKQPKQQQLSLIESLR 422 (464)
Q Consensus 346 l~~~~~-~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~--~~n~~~~~~~~~~~~~~~~~r~~~~~ 422 (464)
+....+ ....+..|+|++++++++++++.++| ++|+++.|+.. |++|+. .+|+|++..++|... . +.....
T Consensus 593 ~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~-e~~~f~~A~~~-l~~f~~~~~~n~Yie~~k~~l~~--~--~~~~~~ 666 (862)
T 1gax_A 593 REGFQAKEDTPTLADRFMRSRLSRGVEEITALY-EALDLAQAARE-VYELVWSEFCDWYLEAAKPALKA--G--NAHTLR 666 (862)
T ss_dssp SSSCCCCBCCCCHHHHHHHHHHHHHHHHHHHHH-TTTCHHHHHHH-HHHHHHHHTTTTHHHHHHHHHHT--T--BHHHHH
T ss_pred ccCCCCccccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHH-HHHHHHHHhhHHHHHHcchhhhc--c--HHHHHH
Confidence 544311 01124568999999999999999999 99999999999 999994 579999998886311 1 445668
Q ss_pred HHHHHHHHHHHhhc-cCCCccHHHHHHHhhhhHhHhcCCCC
Q 012397 423 KIENEVKEVLRILG-LLPPGAYSEVKTAFLVLLHVFFDDSP 462 (464)
Q Consensus 423 ~~~~~l~~~l~lLg-i~p~~~~e~i~~~l~~~~~~~~~~~~ 462 (464)
++.++|+.++.+|+ |+|+ +||+||+.|+...+++++.||
T Consensus 667 ~l~~~l~~~~~lL~P~~P~-~aEeiw~~L~~~~sv~~~~wP 706 (862)
T 1gax_A 667 TLEEVLAVLLKLLHPMMPF-LTSELYQALTGKEELALEAWP 706 (862)
T ss_dssp HHHHHHHHHHHHHTTTSHH-HHHHHHHHHHCCSCGGGSCCC
T ss_pred HHHHHHHHHHHHHhhhhhH-HHHHHHHhcCCCCeEEecCCC
Confidence 89999999999999 9998 999999999755679999988
No 14
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=100.00 E-value=2.5e-52 Score=461.36 Aligned_cols=421 Identities=16% Similarity=0.152 Sum_probs=315.5
Q ss_pred CcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCCh------------HHH
Q 012397 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENP------------LSL 105 (464)
Q Consensus 38 ~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~------------~~~ 105 (464)
++..+..++|+|||.|||||+++++++|+++|+.|++|++|.|+.|+|+||.+|+.+|.+.|+++ +++
T Consensus 48 ~~f~i~~~pPY~nG~lHiGHa~n~~~~Dii~Ry~rm~G~~v~~~~GwD~hGlpiE~~a~k~G~~~~~~~~~~f~~~~~~~ 127 (917)
T 1ffy_A 48 ETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMSTAEFREKCKEF 127 (917)
T ss_dssp CBCCEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTCBCCCCCEEBCCSHHHHHHHHHHTCCSTTTCHHHHHHHHHHH
T ss_pred CceeeCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCcccCchhhHHHHHHHHHcCCCchhCCHHHHHHHHHHH
Confidence 45555666788889999999999999999999999999999999999999999999999989875 689
Q ss_pred HHHHHHHHHHHHHhcCCCCC-CCCCCcc--hhHHHHHHHHHHHHHCCceEeecCcEEEcCCCCCCC--------------
Q 012397 106 SNRYCQEYLVDMADLQCLPP-TYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNY-------------- 168 (464)
Q Consensus 106 ~~~~~~~~~~~l~~lgi~~~-~~~~r~s--~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~~-------------- 168 (464)
++++.+.+.+++++||++.+ +.+.+|. +|.+.++.+|.+|+++|++|++...++||+.|...+
T Consensus 128 ~~~~~~~~~~~~~rlG~~~Dwd~~~~T~d~~~~~~v~~~F~~l~~kGliYr~~~~v~wcp~~~T~Lae~eVey~d~~~~~ 207 (917)
T 1ffy_A 128 ALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIYKGKKPVYWSPSSESSLAEAEIEYHDKRSAS 207 (917)
T ss_dssp HHHHHHHHHHHHHTTTCCSCTTSCEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhCeEEccCCCeEcCCHHHHHHHHHHHHHHHHcCCeEecccceeccCCCCcCcchhhhhcccccCce
Confidence 99999999999999999842 3344443 788899999999999999999999999998751000
Q ss_pred ----------------C-C------------------CCCc---------c------------------cccc-------
Q 012397 169 ----------------G-R------------------LSGQ---------R------------------LENN------- 179 (464)
Q Consensus 169 ----------------g-~------------------l~~~---------~------------------~~~~------- 179 (464)
+ . +.+. + ++..
T Consensus 208 ~~v~f~~~~~~g~~~~~~~~~i~TTrP~Tl~~~~av~v~p~~~Y~~v~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~ 287 (917)
T 1ffy_A 208 IYVAFNVKDDKGVVDADAKFIIWTTTPWTIPSNVAITVHPELKYGQYNVNGEKYIIAEALSDAVAEALDWDKASIKLEKE 287 (917)
T ss_dssp EECCBCCCSSTTGGGTTCCBCCEESCGGGSSCCBCCCCCTTCCCCCCCTTTTCCCCCHHHHHHHHTTTTCCSSCCCCCCC
T ss_pred EEEEEEecccccccCCCCeEEEEeCCcchhhhceEEEECCCCceEEEEeCCceeehHHHHHHHHHHhcCcccceeeeeee
Confidence 0 0 0000 0 0000
Q ss_pred ccCCC----------------------cccCC--------cccCcccccc------------------------------
Q 012397 180 RAGER----------------------VAVDS--------RKRNPADFAL------------------------------ 199 (464)
Q Consensus 180 ~~g~~----------------------~~~~~--------~k~~~~d~~~------------------------------ 199 (464)
..|.. |..+. .-+.+.||.+
T Consensus 288 ~~G~~l~g~~~~~P~~~~~~pvi~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~~~~~vd~~G~~~~~~~~~~G~~v 367 (917)
T 1ffy_A 288 YTGKELEWVVAQHPFLDRESLVINGDHVTTDAGTGCVHTAPGHGEDDYIVGQQYELPVISPIDDKGVFTEEGGQFEGMFY 367 (917)
T ss_dssp CCTTTCTTCCCBCCTTCCSBCCCCCCSSCCSSSCSCCCBCTTSCSHHHHTTTSSSCCCCCCCCSSSCCCTTCSSCSSSCS
T ss_pred eecccccCCEEECCCCCCeeeEEeccccccCCCCceeEeCCCCCHHHHHHHHHcCCCeeeeECCCceeCCcccccCCcCH
Confidence 00000 00000 0000011110
Q ss_pred ------------------------------cccc----------------------------------------------
Q 012397 200 ------------------------------WKAA---------------------------------------------- 203 (464)
Q Consensus 200 ------------------------------w~~~---------------------------------------------- 203 (464)
|+..
T Consensus 368 ~~A~~~Ii~~L~~~g~l~~~~~~~hs~p~c~R~~~pv~~r~t~QWFi~~~~lr~~~l~~i~~~~~~P~~~~~r~~~~l~~ 447 (917)
T 1ffy_A 368 DKANKAVTDLLTEKGALLKLDFITHSYPHDWRTKKPVIFRATPQWFASISKVRQDILDAIENTNFKVNWGKTRIYNMVRD 447 (917)
T ss_dssp SHHHHTTGGGSSHHHHCCCCEEEEEEEEEETTTCCBCEEEEEEEEEECHHHHHHHHHHHHHTSEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCccccccccccCCEecCCCCEEEEEeccceEeeHHHHHHHHHHHHhcCcccCHHHHHHHHHHHhc
Confidence 1000
Q ss_pred -cCCCCcccCCCCCCCCchhhH-H-----------------------------HHHH-----------------------
Q 012397 204 -KAGEPSWDSPWGPGRPGWHIE-C-----------------------------SAMS----------------------- 229 (464)
Q Consensus 204 -~~g~~~~~~~wg~~~P~w~~~-~-----------------------------~~~~----------------------- 229 (464)
.+..++|+..||.++|.|+.+ . ..+.
T Consensus 448 ~~DW~ISRqr~WG~PIP~~~~~~g~~~~~~~~~~~i~~~~~~~g~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~D~lD~ 527 (917)
T 1ffy_A 448 RGEWVISRQRVWGVPLPVFYAENGEIIMTKETVNHVADLFAEHGSNIWFEREAKDLLPEGFTHPGSPNGTFTKETDIMDV 527 (917)
T ss_dssp CCCEECEESCSSSCBCCCEECTTSCEECCHHHHHHHHHHHHHHCTHHHHHSCHHHHSSTTCCCSSCTTSCCEECCCEECH
T ss_pred CccceeeccCCcCcccceeeCCCCCEecCHHHHHHHHHHhhhcCCcccccCCHHHhcccccccccCCcccccccCCCcCe
Confidence 122346677899999977531 0 0000
Q ss_pred ------Hh--------hcCCCeeEEEecccCccccchHHHHHHhhccC-CCCccEEEEeeeeee-CCcccccccCCccCH
Q 012397 230 ------AH--------YLSSKFDIHGGGIDLIFPHHENEIAQSCAACQ-DSNVSYWMHNGHVTN-NNEKMSKSLGNFFTI 293 (464)
Q Consensus 230 ------~~--------~~~~~~~i~~~G~D~~~~h~~~~~a~~~a~~~-~~~~~~~~~~~~v~~-~G~KmSks~gn~i~~ 293 (464)
.. .+.+|+|+++.|+||+++|+....++..++.+ .||.++++ |||+++ +|+|||||+||+|+|
T Consensus 528 WfdSg~~~~~~l~~~~~~~~P~Dl~~~G~D~~r~wf~~~l~~s~~~~g~~Pfk~v~~-hG~V~d~~G~KMSKSlGNvV~P 606 (917)
T 1ffy_A 528 WFDSGSSHRGVLETRPELSFPADMYLEGSDQYRGWFNSSITTSVATRGVSPYKFLLS-HGFVMDGEGKKMSKSLGNVIVP 606 (917)
T ss_dssp HHHHHTHHHHTTTTSTTCCSSBSEEEEEGGGGTTHHHHHHHHHHHHHSSCSBSEEEE-ECCEECTTSCCCCSSSSCCCCH
T ss_pred ecCCCCCHHHHcCCchhcCCCceEEEEEecccccHHHHHHHHHHHhhCCCcccceeE-eeeEEcCCCcCcccccCCcCCh
Confidence 00 01247899999999887665444444444444 46678866 599997 999999999999999
Q ss_pred HHHHHhcCchhHHHHHhhcCCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcccc--C----CCccCCChhHHHHHH
Q 012397 294 RQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQE--H----GKTARINPAAEDCIN 367 (464)
Q Consensus 294 ~dll~~~~~dalR~~ll~~~~~~~~~f~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~--~----~~~~~~d~~l~~~l~ 367 (464)
.|++++||+|++|||+++.++++|++|+++.+.+..+.+.+|+|+++++.+.+..+.. . ....+.|++++.+++
T Consensus 607 ~dvi~~yGaDalR~~lls~~~~~D~~fs~~~l~~~~~~~~kl~n~~r~~l~nl~~~~~~~~~v~~~~l~~~D~~il~~l~ 686 (917)
T 1ffy_A 607 DQVVKQKGADIARLWVSSTDYLADVRISDEILKQTSDDYRKIRNTLRFMLGNINDFNPDTDSIPESELLEVDRYLLNRLR 686 (917)
T ss_dssp HHHHHHTCHHHHHHHHHTSCTTSCEECCHHHHHHHHHHHHHHHHHHHHHHHTSTTCCHHHHCCCGGGSCHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHhccCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhhhhccCcccccCCccccCHHHHHHHHHHH
Confidence 9999999999999999998999999999999999989999999999888776654321 0 112456799999999
Q ss_pred HHHHHHHHHHhcccChHHHHHHHHHHHHH--HHHHHhhhhccc--CchhhhhhHHHHHHHHHHHHHHHHHhhc-cCCCcc
Q 012397 368 KLRDEFHARMSDDLNTSHILTGAFQDALK--FINSSLNMLKKK--QPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGA 442 (464)
Q Consensus 368 ~~~~~v~~~~~~~~~~~~al~~yl~~l~~--~~n~~~~~~~~~--~~~~~~~~r~~~~~~~~~~l~~~l~lLg-i~p~~~ 442 (464)
++++++.++| ++|+++.|++. |++|+. ..|.|++..++| ...+...+|..+..++.++++.++.+|+ |+|+ +
T Consensus 687 ~~~~~v~~a~-e~~~f~~a~~~-l~~f~~~~l~~~Yl~~~k~rl~~~~~~~~~r~~~~~~l~~~l~~l~~lLaP~~P~-~ 763 (917)
T 1ffy_A 687 EFTASTINNY-ENFDYLNIYQE-VQNFINVELSNFYLDYGKDILYIEQRDSHIRRSMQTVLYQILVDMTKLLAPILVH-T 763 (917)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHH-HHHHHHCCCCCCHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHHHHHTTTSHH-H
T ss_pred HHHHHHHHHH-HccCHHHHHHH-HHHHHHHHHHHHHHHhcchhhhccCCCcHHHHHHHHHHHHHHHHHHHHhcccccH-H
Confidence 9999999999 99999999999 999998 457888887774 3222344566777889999999999999 9998 9
Q ss_pred HHHHHHHhhh--hHhHhcCCCC
Q 012397 443 YSEVKTAFLV--LLHVFFDDSP 462 (464)
Q Consensus 443 ~e~i~~~l~~--~~~~~~~~~~ 462 (464)
||+||+.|+. ..++++..||
T Consensus 764 aEeiw~~l~~~~~~sv~~~~wP 785 (917)
T 1ffy_A 764 AEEVWSHTPHVKEESVHLADMP 785 (917)
T ss_dssp HHHHHTTSTTCSSSSGGGSCCC
T ss_pred HHHHHHHcccCCCCCeEecCCC
Confidence 9999999974 4579999988
No 15
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=100.00 E-value=2.9e-52 Score=459.24 Aligned_cols=419 Identities=15% Similarity=0.122 Sum_probs=309.3
Q ss_pred CcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHc-CCC---------------
Q 012397 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDL-GEN--------------- 101 (464)
Q Consensus 38 ~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~-g~~--------------- 101 (464)
++..+..++|+|||.|||||+++++++|+++|+.|++|++|.++.|+|+||.+|+.+|.+. |.+
T Consensus 38 ~~f~i~~~pPy~nG~lHiGH~~~~~~~D~i~R~~rm~G~~v~~~~G~D~~Glpie~~a~k~l~~~~~~~~~~~g~~~f~~ 117 (821)
T 1ile_A 38 PRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGLPVELEVEKKLGLKSKREIEAYGIERFNQ 117 (821)
T ss_dssp CBCCBCCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEECCCHHHHHHHHHHHTTCCSHHHHHHHCHHHHHH
T ss_pred CcEEEecCCCCCCCCCchhhhHhHHHHHHHHHHHHhcCCcccccccccCCCchHHHHHHHHhcccccchHhhcCHHHHHH
Confidence 4556667778888999999999999999999999999999999999999999999999885 876
Q ss_pred -hHHHHHHHHHHHHHHHHhcCCCCC-CCCCCcc--hhHHHHHHHHHHHHHCCceEeecCcEEEcCCCCCCC-------C-
Q 012397 102 -PLSLSNRYCQEYLVDMADLQCLPP-TYQPRVS--DHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNY-------G- 169 (464)
Q Consensus 102 -~~~~~~~~~~~~~~~l~~lgi~~~-~~~~r~s--~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~~-------g- 169 (464)
++++++++.+.+.+.+++||++.+ +.+.+|. +|.+.++++|.+|+++|++|++...++||+.|...+ |
T Consensus 118 ~~~~~~~~~~~~~~~~~~~lg~~~dwd~~~~T~d~~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t~Lad~ev~~G~ 197 (821)
T 1ile_A 118 ACRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNLFDRGLLYRDHKVVPYCPRCGTPLSSHEVALGY 197 (821)
T ss_dssp HHHHHTTTTHHHHTTHHHHTTCCCEEEEEEETTSHHHHHHHHHHHHHHHHTTCEEEECCEEEEETTTTEECCHHHHHHTE
T ss_pred HHHHHHHHHHHHHHHHHHHhCCeEccCCCeEECCHHHHHHHHHHHHHHHHcCCeeecCcceEecCCCCCcccHhHhhcCc
Confidence 457888999999999999995431 3444443 788999999999999999999999999998742100 0
Q ss_pred -C-----------CCCc-----------------------------------------cc--------c-----------
Q 012397 170 -R-----------LSGQ-----------------------------------------RL--------E----------- 177 (464)
Q Consensus 170 -~-----------l~~~-----------------------------------------~~--------~----------- 177 (464)
. +.+. +. +
T Consensus 198 ~~~~~~~~~v~f~~~~~~~~~~~~~~l~v~TTrP~Tl~g~~av~v~p~~~y~~~~~~~~~~i~a~~~~~~~~~~~~~~~~ 277 (821)
T 1ile_A 198 KEIQDPSVYVRFPLKEPKKLGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEALILEEGLGRKLLGEGTQVLK 277 (821)
T ss_dssp EEEEEEEEEEEEEBSSGGGGTCSSEEEEEEESCGGGGGGCCCEEECTTSCEEEEEETTEEEEEETTHHHHHTCTTSCEEE
T ss_pred ccccCceEEEEEEecCCcccCCCCCEEEEEcCCChhhhhcEEEEECCCCceeEEEcCCcEEEehHHHHHHHHhhCcEEEE
Confidence 0 0000 00 0
Q ss_pred -----ccccCC--------------------CcccC--------CcccCccccc--------------------------
Q 012397 178 -----NNRAGE--------------------RVAVD--------SRKRNPADFA-------------------------- 198 (464)
Q Consensus 178 -----~~~~g~--------------------~~~~~--------~~k~~~~d~~-------------------------- 198 (464)
++ .|. .|..+ ...+.+.|+.
T Consensus 278 ~~~G~~l-~g~~~~~p~~~~~~~~~pi~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~id~~G~~~~~~~~G 356 (821)
T 1ile_A 278 TFPGKAL-EGLPYTPPYPQALEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTVDEEGKLLVEPFKG 356 (821)
T ss_dssp EECHHHH-TTCBBCCSSCCCCSSCSBEEECTTCCSSSSCSCEECCTTSCHHHHHHHHHTTCCCCCCBCTTSBBCSGGGTT
T ss_pred EechHHh-cCCEEEcCCcccCCCEEEEEecCcCccCCCCcceEecCCCCHHHHHHHHHcCCCcceeECCCCcCcccCcCC
Confidence 00 000 00000 0000000000
Q ss_pred ------------------------------------------------------------------ccc-----------
Q 012397 199 ------------------------------------------------------------------LWK----------- 201 (464)
Q Consensus 199 ------------------------------------------------------------------~w~----------- 201 (464)
-|.
T Consensus 357 ~~~~~a~~~i~~~L~~~g~~~~~~~~~h~~p~c~r~~~~~~~~~~~qWF~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~ 436 (821)
T 1ile_A 357 LYFREANRAILRDLRGRGLLFKEESYLHSYPHCWRCSTPLMYYATESWFIKNTLFKDELIRNNQEIHWVPPHIKEGRYGE 436 (821)
T ss_dssp CBHHHHHHHHHHHHHHTTCEEEEEEEEEEEEBCSSSCCBCEEEECCEEEECGGGGHHHHHHHHHHSEESSGGGTTTTTHH
T ss_pred CCHHHHHHHHHHHHHhCCCeeeeecccccCCEecCCCCEEEEEecchhhhchHHHHHHHHHHhcCeEEECchhhHhHHHH
Confidence 010
Q ss_pred ---cccCCCCcccCCCCCCCCchhhH---------------------------------------H--------------
Q 012397 202 ---AAKAGEPSWDSPWGPGRPGWHIE---------------------------------------C-------------- 225 (464)
Q Consensus 202 ---~~~~g~~~~~~~wg~~~P~w~~~---------------------------------------~-------------- 225 (464)
...+..++|+..||.++|.|+.+ |
T Consensus 437 ~l~~l~DW~ISRqr~WG~pIP~~~~~~~~~~~vi~~~~~l~~~~~~~~~~~~~l~~~~~d~~~~~~~~g~~~~r~~dvld 516 (821)
T 1ile_A 437 WLKNLVDWALSRNRYWGTPLPIWVCQACGKEEAIGSFQELKARATKPLPEPFDPHRPYVDQVELACACGGTMRRVPYVID 516 (821)
T ss_dssp HHHTCCCEECCBCCSSSCBCCEEEESSSSCCEECCSHHHHHHHBSSCCCSSCCCSHHHHTTCEEECTTSSEEEECSCBCC
T ss_pred HHhCCchheecccCCCCCeeeEEEecCCCcEEeeCcHHHHHhhccccccchhhhccccccccccCCCCCCchhhcccccc
Confidence 01122356777899999966320 0
Q ss_pred ----HHHH-HhhcC------------CCeeEEEecccCccccchHHHHHHhhccC-CCCccEEEEeeeeee-CCcccccc
Q 012397 226 ----SAMS-AHYLS------------SKFDIHGGGIDLIFPHHENEIAQSCAACQ-DSNVSYWMHNGHVTN-NNEKMSKS 286 (464)
Q Consensus 226 ----~~~~-~~~~~------------~~~~i~~~G~D~~~~h~~~~~a~~~a~~~-~~~~~~~~~~~~v~~-~G~KmSks 286 (464)
+... ...++ +|+|++++|+||+++|+....++..++.+ .||.++++| |+++. +|+|||||
T Consensus 517 ~WfdS~~~~~~~~~~p~~~~~~f~~~~P~dl~~~G~D~~r~w~~~~~~~~~~~~~~~pf~~v~~h-g~vl~~~G~KMSKS 595 (821)
T 1ile_A 517 VWYDSGAMPFASLHYPFEHEEVFRESFPADFIAEGIDQTRGWFNSLHQLGVMLFGSIAFKNVICH-GLILDEKGQKMSKS 595 (821)
T ss_dssp HHHHHHHHHHHTTTTTTSCHHHHHHHSSBSBEEEEGGGGGTHHHHHHHHHHHHHSSCSBSEEEEE-CCEECTTSSCCCTT
T ss_pred eecccccchHhhcCCCccchHHHhhcCCcccccchhhhhccHHHHHHHHHHHhcCCCCcceEEEE-eeEECCCCCCCCcc
Confidence 0000 00011 47899999999998887666666666655 477888775 88886 99999999
Q ss_pred cCCccCHHHHHHhcCchhHHHHHhhc-CCCCccCCCHHHHHHH-HHHHHHHHHHHHHHHH--hcCcccc-----CCCccC
Q 012397 287 LGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYSVLQLDSA-SDAVFYIYQTLQDCEV--ALSPFQE-----HGKTAR 357 (464)
Q Consensus 287 ~gn~i~~~dll~~~~~dalR~~ll~~-~~~~~~~f~~~~~~~~-~~~l~~l~~~~~~~~~--~l~~~~~-----~~~~~~ 357 (464)
+||+|+|.|++++||+|++|||+++. ++++|++|+++.+.+. .+.+.+|+|+++++.. .+....+ .....+
T Consensus 596 ~GNvV~p~dli~~yGaDalR~~ll~~~~~~~d~~fs~~~l~~~~~~~~~kl~N~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (821)
T 1ile_A 596 KGNVVDPWDIIRKFGADALRWYIYVSAPPEADRRFGPNLVRETVRDYFLTLWNVYSFFVTYANLDRPDLKNPPPPEKRPE 675 (821)
T ss_dssp TTCCCCHHHHHTTTCHHHHHHHHHHHSCSSSCEECCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCCCTTSCCCSTTSCH
T ss_pred CCCCCCHHHHHHHhCHHHHHHHHHhCCCCCCCcEecHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccccccccCCH
Confidence 99999999999999999999999997 7999999999999984 6678888888877542 1222111 011234
Q ss_pred CChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHH--HHHHHHhhhhc--ccCchhhhhhHHHHHHHHHHHHHHHHH
Q 012397 358 INPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDAL--KFINSSLNMLK--KKQPKQQQLSLIESLRKIENEVKEVLR 433 (464)
Q Consensus 358 ~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~--~~~n~~~~~~~--~~~~~~~~~~r~~~~~~~~~~l~~~l~ 433 (464)
.|++++.+++++++++.++| ++++++.|++. |++|+ ...|.|++..+ +|...+ .++|+.++.++.++|+.++.
T Consensus 676 ~d~~ll~~l~~~~~~v~~a~-e~~~f~~A~~~-l~~f~~~~~~n~Yl~~~k~~~~~~~~-~~~r~~~~~~l~~~l~~~~~ 752 (821)
T 1ile_A 676 MDRWLLARMQDLIQRVTEAL-EAYDPTTSARA-LRDFVVEDLSQWYVRRNRRRFWKNED-ALDREAAYATLYEALVLVAT 752 (821)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHH-HHHHHHHHSSTTTHHHHHHHHHTCTT-TSSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-HccCHHHHHHH-HHHHHHHHHHHHHHHHhhhhcccCCC-cHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999 89999999999 99999 56799988764 476433 23455667888999999999
Q ss_pred hhc-cCCCccHHHHHHHhhhh-----H-hHhcCCCC
Q 012397 434 ILG-LLPPGAYSEVKTAFLVL-----L-HVFFDDSP 462 (464)
Q Consensus 434 lLg-i~p~~~~e~i~~~l~~~-----~-~~~~~~~~ 462 (464)
+|+ |+|+ +||+||+.|+.- . +++++.||
T Consensus 753 lLaP~~P~-~aeelw~~L~~~~~~~~~~sv~~~~~P 787 (821)
T 1ile_A 753 LAAPFTPF-LAEVLWQNLVRSVRLEAKESVHLADWP 787 (821)
T ss_dssp HHTTTSTT-HHHHHHHHHTTTTSTTSCSSGGGSCCC
T ss_pred HcCCccch-HHHHHHHhccccccCCCCCceEeecCC
Confidence 999 9999 999999999753 4 79999888
No 16
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=100.00 E-value=4.3e-49 Score=430.69 Aligned_cols=419 Identities=15% Similarity=0.121 Sum_probs=298.4
Q ss_pred eeecccCC-CCcceEEE--eCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHH
Q 012397 29 KELFTPIV-RGKVGMYV--CGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSL 105 (464)
Q Consensus 29 ~~~~~~~~-~~~~~v~~--~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~ 105 (464)
...|.+.. +++..+|+ ++|+|||+|||||+|+++++|+++|++|++|++|.++.|+|+||.+|+.+|.+.|++++++
T Consensus 41 ~~~f~~~~~~~~~~~~v~~~~PypnG~lHiGHa~~~~~~DvlaRy~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~ 120 (880)
T 4arc_A 41 KRTFEVTEDESKEKYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNNTAPAPW 120 (880)
T ss_dssp TTTTCCCCCTTSCEEEEEECCCCCCSSCCHHHHHHHHHHHHHHHHHHHTTCEEECCCEECCCSTHHHHHHHHTTSCHHHH
T ss_pred cCCcccCCcCCCCCEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCceEEecCccccCcHHHHHHHHcCCCHHHH
Confidence 34565543 24444444 4688889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCC-CCCCCc--chhHHHHHHHHHHHHHCCceEeecCcEEEcCCC-------------CCCCC
Q 012397 106 SNRYCQEYLVDMADLQCLPP-TYQPRV--SDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK-------------SPNYG 169 (464)
Q Consensus 106 ~~~~~~~~~~~l~~lgi~~~-~~~~r~--s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~-------------~~~~g 169 (464)
++++.+.|.+++++||++.+ +.+.+| .+|.+.++++|.+|+++|++|++...++||+.| |+.||
T Consensus 121 ~~~~i~~~~~~l~~LGis~Dw~~~~~T~d~~~~~~v~~~f~~L~ekGliY~~~~~v~wcp~~~t~La~~ev~~g~~~~~g 200 (880)
T 4arc_A 121 TYDNIAYMKNQLKMLGFGYDWSRELATCTPEYYRWEQKFFTELYKKGLVYKKTSAVNWCPNDQTVLANEQVIDGCCWRCD 200 (880)
T ss_dssp HHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHHHTTCEEEEEECC------------------------
T ss_pred HHHHHHHHHHHHHHhCCCcCCCCCEEcCCHHHHHHHHHHHHHHHHCCCEEEeceeEeecCCcCCEecchhhhcCcCcCCC
Confidence 99999999999999999963 133333 378899999999999999999999999999874 55665
Q ss_pred C-------------CCC---c---cccc---------------------------ccc----------------CC----
Q 012397 170 R-------------LSG---Q---RLEN---------------------------NRA----------------GE---- 183 (464)
Q Consensus 170 ~-------------l~~---~---~~~~---------------------------~~~----------------g~---- 183 (464)
. ++. . .++. +.. |.
T Consensus 201 ~~ve~~~~~~~f~~i~~y~~~Ll~~l~~~~~wp~~v~~~~~~wig~s~g~~v~f~~~~~~~~i~v~TTrP~Tl~g~t~va 280 (880)
T 4arc_A 201 TKVERKEIPQWFIKITAYADELLNDLDKLDHWPDTVKTMQRNWIGRSEGVEITFNVNDYDNTLTVYTTRPDTFMGCTYLA 280 (880)
T ss_dssp ------CEEEEEECGGGGHHHHHHHGGGCTTSCHHHHHHHHHHHCEEEEEEEEEEETTCSSEEEEEESCGGGGGGCCEEE
T ss_pred CccEEEEccceEEeechhHHHHHHHHhhcccccHHHHHHHHhhhccccceEEEEEecCCCceEEEEeCCchhhcCCeEEE
Confidence 3 000 0 0000 000 00
Q ss_pred --------------------------------------------------------C--------cccCC--------cc
Q 012397 184 --------------------------------------------------------R--------VAVDS--------RK 191 (464)
Q Consensus 184 --------------------------------------------------------~--------~~~~~--------~k 191 (464)
. |..+. .-
T Consensus 281 v~Pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~P~~~~~ipi~~~~yV~~~~GTGaV~~~Pa 360 (880)
T 4arc_A 281 VAAGHPLAQKAAENNPELAAFIDECRNTKVAEAEMATMEKKGVDTGFKAVHPLTGEEIPVWAANFVLMEYGTGAVMAVPG 360 (880)
T ss_dssp ECTTCHHHHHHGGGCHHHHHHHTC----------------CEEEEEEEEECTTTCCEEEEEEETTSCSSSTTSEEEECTT
T ss_pred ECCCcHHHHHHhcChHHHHHHHHHHhccCchhhhhccceeeccccCcEEecCCCCCEeEEEEeCccccCCCCceEEEccC
Confidence 0 00000 00
Q ss_pred cCccccccccc-----------------------------------------------------------------ccCC
Q 012397 192 RNPADFALWKA-----------------------------------------------------------------AKAG 206 (464)
Q Consensus 192 ~~~~d~~~w~~-----------------------------------------------------------------~~~g 206 (464)
+.++||..++. .++.
T Consensus 361 hd~~D~~~~~~~~Lpi~~vi~~~~~~~~~~~~~~~~~~g~~~ns~~~~Gl~~~eA~~~ii~~L~~~g~~~~~v~yrlrDW 440 (880)
T 4arc_A 361 HDQRDYEFASKYGLNIKPVILAADGSEPDLSQQALTEKGVLFNSGEFNGLDHEAAFNAIADKLTAMGVGERKVNYRLRDW 440 (880)
T ss_dssp TCHHHHHHHHHHTCCCCCCBCCTTSCCCCCSSSCCCSCCCBCSSGGGTTCCHHHHHHHHHHHHHHTTSEEEEEEESCCCE
T ss_pred CCHHHHHHHHHcCCCceEeeccCcccccccccccccCCceeecCcccCCCCHHHHHHHHHHHHHHcCCcceeEEEEcccc
Confidence 00112211100 0011
Q ss_pred CCcccCCCCCCCCchhhH-HHH------------------------H-----------------------------HHh-
Q 012397 207 EPSWDSPWGPGRPGWHIE-CSA------------------------M-----------------------------SAH- 231 (464)
Q Consensus 207 ~~~~~~~wg~~~P~w~~~-~~~------------------------~-----------------------------~~~- 231 (464)
.++|+..||.++|.|+.+ |.. + ++.
T Consensus 441 ~iSRQRyWG~PIPi~~c~~cg~v~v~~~~Lpv~lp~~~~~~~~g~pl~~~~~w~~~~cpg~~~~retDtmDtw~dSswy~ 520 (880)
T 4arc_A 441 GVSRQRYWGAPIPMVTLEDGTVMPTPDDQLPVILPEDVVMDGITSPIKADPEWAKTTVNGMPALRETDTFDTFMESSWYY 520 (880)
T ss_dssp ECEESCSSSCBCCEEEETTSCEEECCGGGCSCCCCSSCCCCSSSCHHHHSTTTTEEESSSSEEEECCCEECTTTGGGTHH
T ss_pred eeeeeeccCCcceEEEECCCCeEeCChHHCccccchhcccCCCCCchHhCccceeeccCCCcceeCCCcCCCcccCcHHH
Confidence 134566799999988742 100 0 000
Q ss_pred --h---------cC-------CCeeEEEecccCccccchH---HHHHHhhcc----CCCCccEEEEeeeee-------e-
Q 012397 232 --Y---------LS-------SKFDIHGGGIDLIFPHHEN---EIAQSCAAC----QDSNVSYWMHNGHVT-------N- 278 (464)
Q Consensus 232 --~---------~~-------~~~~i~~~G~D~~~~h~~~---~~a~~~a~~----~~~~~~~~~~~~~v~-------~- 278 (464)
| +. .|+|++++|.||...|..+ |...+...+ ..||.++ +++|||+ .
T Consensus 521 ~r~~~p~~~~~~~~~~~~~~~~PvD~yigG~EHailHllyaRf~~~~L~~~g~~~~~ePFk~l-l~qGmVl~~~~~~~d~ 599 (880)
T 4arc_A 521 ARYTCPQYKEGMLDSEAANYWLPVDIYIGGIEHAIMHLLYFRFFHKLMRDAGMVNSDEPAKQL-LCQGMVLADAFYYVGE 599 (880)
T ss_dssp HHTTSTTCCSSSCCHHHHHHHCSEEEEECCGGGTTTHHHHHHHHHHHHHHTTSCCCSCSEEEE-ECCCCEEEEEEEEECT
T ss_pred HhhcCCCccccccChHHHhccCCceEeecchhhHHHHHHHHHHHHHHHHHhhcccCCCChHHe-EEeceEeecceecccc
Confidence 0 00 2899999999988777533 333333333 2455666 6689996 2
Q ss_pred CCc------------------------------------ccccccCCccCHHHHHHhcCchhHHHHHhhc-CCCCccCCC
Q 012397 279 NNE------------------------------------KMSKSLGNFFTIRQITERYHPLALRHFLISA-HYRSPLNYS 321 (464)
Q Consensus 279 ~G~------------------------------------KmSks~gn~i~~~dll~~~~~dalR~~ll~~-~~~~~~~f~ 321 (464)
+|+ |||||+||+|+|.|++++||+|++|||+++. +++++++|+
T Consensus 600 ~G~~~~~~~~~v~~~~~~~~~~~~~~~~~G~~v~~~~~eKMSKSkGNvVdP~diIekYGADalRl~ll~~~~~~~dl~~s 679 (880)
T 4arc_A 600 NGERNWVSPVDAIVERDEKGRIVKAKDAAGHELVYTGMSKMSKSKNNGIDPQVMVERYGADTVRLFMMFASPADMTLEWQ 679 (880)
T ss_dssp TSCEEEECSTTCEEEECTTCCEEEEECTTCCBCEEEEEEECCTTTTCCCCHHHHHHHHCHHHHHHHHHHSSCTTSCEECC
T ss_pred CCcccccCHHHhccccccccccccccccCCccccccccccccCcCCCCCCHHHHHHHcCchHHHHHHHhcCCCCCCcccC
Confidence 566 9999999999999999999999999999998 899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCccc-cCCCccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHH
Q 012397 322 VLQLDSASDAVFYIYQTLQDCEVALSPFQ-EHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINS 400 (464)
Q Consensus 322 ~~~~~~~~~~l~~l~~~~~~~~~~l~~~~-~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~ 400 (464)
.+.+.++.+.+.++|+++.+......... ........|+|++++++++++++.++|+++|+++.|++. |++|++.+|+
T Consensus 680 ~~~ie~a~rfl~rlwn~~~~~~~~~~~~~~~~~~l~~~D~~ll~~l~~~i~~V~~a~ed~~~fntAi~~-l~efvn~l~k 758 (880)
T 4arc_A 680 ESGVEGANRFLKRVWKLVYEHTAKGDVAALNVDALTENQKALRRDVHKTIAKVTDDIGRRQTFNTAIAA-IMELMNKLAK 758 (880)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHH-HHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHH-HHHHHHHHHh
Confidence 99999999999999999876654321100 011224567999999999999999999338999999999 9999999988
Q ss_pred HhhhhcccCchhhhhhHHHHHHHHHHHHHHHHHhhc-cCCCccHHHHHHHhhhhHhHhcCCCC
Q 012397 401 SLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVKTAFLVLLHVFFDDSP 462 (464)
Q Consensus 401 ~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~l~lLg-i~p~~~~e~i~~~l~~~~~~~~~~~~ 462 (464)
|... . .....++.++++.++.||+ |+|+ +||+||+.|+..-+++.+.||
T Consensus 759 ~~~~---------~---~~~~~~l~~~l~~ll~LLaPf~Ph-iaEElW~~Lg~~~sv~~~~wP 808 (880)
T 4arc_A 759 APTD---------G---EQDRALMQEALLAVVRMLNPFTPH-ICFTLWQELKGEGDIDNAPWP 808 (880)
T ss_dssp SCCS---------S---HHHHHHHHHHHHHHHHHHTTTSHH-HHHHHHHHTTCSSCGGGSCCC
T ss_pred hhcc---------c---hHHHHHHHHHHHHHHHHHhhccHH-HHHHHHHHcCCCCeEEeCCCC
Confidence 6210 0 1123567889999999999 9999 999999999877788888888
No 17
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=100.00 E-value=1.1e-50 Score=432.09 Aligned_cols=384 Identities=17% Similarity=0.128 Sum_probs=284.0
Q ss_pred CCCcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHH-----------------------
Q 012397 36 VRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKII----------------------- 92 (464)
Q Consensus 36 ~~~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~----------------------- 92 (464)
.+++|.|++|||||+|++||||+|++++||+|+|++|+.|++|.++++++|+|.++-
T Consensus 117 ~~~~V~ve~~spN~~~~~HiGH~Rs~iigD~laR~l~~~G~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~~~~~~~ 196 (629)
T 2zue_A 117 KGKKVIVEHTSVNPTKPLHMGHARNAILGDVMARILRFLGYEVEVQNYIDDLGIQFAQVYWGYLRLKEEFERIMNELRER 196 (629)
T ss_dssp TTCEEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeeCCCCCCCCccchhHHHHHHHHHHHHHHHcCCCceEEecccchhHHHHHHHHHHHHhCCcchhhhhhhccc
Confidence 467999999999999999999999999999999999999999999999999976521
Q ss_pred ----------------HHHHH-------------------cC-CChHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchh--
Q 012397 93 ----------------RRAND-------------------LG-ENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDH-- 134 (464)
Q Consensus 93 ----------------~~a~~-------------------~g-~~~~~~~~~~~~~~~~~l~~lgi~~~~~~~r~s~~-- 134 (464)
..+++ .| ..++.+++.+...|.+++++|||++ |.+.++|++
T Consensus 197 ~~~~~~~d~~~g~~y~~~a~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~~~~~~~~f~~~~~~L~I~~-D~~~~es~~~~ 275 (629)
T 2zue_A 197 GLKDNPIDHALGLLYVEVNRRLEDNPELENEIRDIMKKLESGELYGRKLAEEVVRAQMVTTYKLGVKY-DLLVWESDIVR 275 (629)
T ss_dssp TSCSCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHTCCC-SEEEEHHHHHH
T ss_pred ccccCcchhhHHHHHHHHHHHHhcCchHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHcCCcc-ccccCcCcccc
Confidence 11111 13 4558999999999999999999996 889999977
Q ss_pred HHHHHHHHHHHHHCCceE-----eecCcEEEcCCCCCCCCCCCCccccccccCCCcccCCcccCcccc--cccc------
Q 012397 135 MEQIKDMITQIINNDCAY-----VVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADF--ALWK------ 201 (464)
Q Consensus 135 ~~~~~~~~~~L~~~G~~y-----~~~~~~~~~~~~~~~~g~l~~~~~~~~~~g~~~~~~~~k~~~~d~--~~w~------ 201 (464)
...+++++++|.++|++| +.++..|+....+.....+.. .+..-.+|... | ...|+ ++||
T Consensus 276 ~~~v~~vi~~L~~kG~~y~~~~ge~~Ga~~v~~~~~g~~~~~~~-~v~~ksdG~~~----Y--~~~Diay~~~K~~ll~~ 348 (629)
T 2zue_A 276 RKLFEIALELLSKNENFYIPSDGKYRGAFVMDLRKLFPDMKNPI-LVLRRSDGTAT----Y--TGKDIAYHLWKFGKIDV 348 (629)
T ss_dssp TTHHHHHHHHHHTSTTEECCSSSTTTTCEEEECTTTCSSSSCCE-EEEECTTSCBC----H--HHHHHHHHHHHTTCSCC
T ss_pred chhHHHHHHHHHHCCCccccccCCcCCcEEEECcccCCccccCc-eEEEecCCccc----c--chhhHHHHHHHhhcccc
Confidence 678999999999999999 556666665443211101000 01111122110 0 02355 4564
Q ss_pred --cccCC-CCcc-cCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCccccchHHHHHHhhccCCCCccEEEE--eee
Q 012397 202 --AAKAG-EPSW-DSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMH--NGH 275 (464)
Q Consensus 202 --~~~~g-~~~~-~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h~~~~~a~~~a~~~~~~~~~~~~--~~~ 275 (464)
..+.. ...| ..+||+++|+= ...++..++|++.+.++ |.....+.+.++|.+..+..+.| +||
T Consensus 349 ~fr~~~~~~~~~~~~~wG~~~Pg~--------~~~~d~~IyV~g~~q~~---~~~~l~~~l~~lG~~~~~~~~~h~~~g~ 417 (629)
T 2zue_A 349 DLLYKEWDSTTWTTAPDGKSMPNK--------FGNANIVINVIGAEQKH---PQLAIKYALQLLGFEDAAANLYHLAYEH 417 (629)
T ss_dssp CCEEEECSSSCEEEEEEEEECTTS--------SCCCSEEEEEEEGGGHH---HHHHHHHHHHHTTCHHHHHTEEEEEECC
T ss_pred cccCCcccccccccCCCCCCCCCc--------cCCCCcEEEEEeCcHhh---HHHHHHHHHHHcCCCCCCCeEEEEEeee
Confidence 22221 2233 35899999950 01133345555554442 22222344444554321222344 488
Q ss_pred eeeCCcccccccC--CccCHHHHHHh---------------------------cCchhHHHHHhhcCCCCccCCCHHHHH
Q 012397 276 VTNNNEKMSKSLG--NFFTIRQITER---------------------------YHPLALRHFLISAHYRSPLNYSVLQLD 326 (464)
Q Consensus 276 v~~~G~KmSks~g--n~i~~~dll~~---------------------------~~~dalR~~ll~~~~~~~~~f~~~~~~ 326 (464)
|+++|+|||||+| |+|+++|++++ +|+||+||++++.++.++++||++.+.
T Consensus 418 V~~~~~KMSkr~G~~n~v~l~dLl~e~~~~a~~~~~~~~~~~~~~~~~~~a~~vg~~AvRy~~L~~~~~~~~~Fd~d~~~ 497 (629)
T 2zue_A 418 VERPEGKFSGRKGTWVGFTVDEVIQEAVKRARELIEEKNPALSDEEKAEVAEKVGIGAIRYNLIKYSPDKKIIFRWEDVL 497 (629)
T ss_dssp EEBTTBCCCTTTTTTTTCBHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHSSCTTSCEECCHHHHS
T ss_pred EEcCCCcccCCCCCCCeeeHHHHHHHHHHHHHHHHHhcCcccchhhHHHHHHhcChhHhhHHHHhcCCCCCCeecHHHHH
Confidence 9999999999999 99999999998 999999999999988999999999998
Q ss_pred HHHHH-HHHHHHHHHHHHHhcCccccCC---------------CccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHH
Q 012397 327 SASDA-VFYIYQTLQDCEVALSPFQEHG---------------KTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGA 390 (464)
Q Consensus 327 ~~~~~-l~~l~~~~~~~~~~l~~~~~~~---------------~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~y 390 (464)
+..++ ..|++|+++|++++++++.... ..++.|..|+..+.++++.+.+++ +++.++.++..
T Consensus 498 ~~~~~t~~ylqYa~aRi~Silrka~~~~~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~~v~~a~-~~~~p~~l~~y- 575 (629)
T 2zue_A 498 NFEGESAPYIQYAHARCSSILRKAEEEGIKVDPETLFKNADFTKLSERERELVIMLSKFPRIVEQAG-KDVKPHLIAWF- 575 (629)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHCCCSSCCHHHHHHHHHHHHHHHHHHHHH-HTTCTHHHHHH-
T ss_pred HHhcCchHHHHHHHHHHHHHHHhhhccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHHH-HhCCHHHHHHH-
Confidence 77653 4599999999999997753221 113345789999999999999999 89886666655
Q ss_pred HHHHHHHHHHHhhhhcccCch-hhhhhHHHHHHHHHHHHHHHHHhhccCCC
Q 012397 391 FQDALKFINSSLNMLKKKQPK-QQQLSLIESLRKIENEVKEVLRILGLLPP 440 (464)
Q Consensus 391 l~~l~~~~n~~~~~~~~~~~~-~~~~~r~~~~~~~~~~l~~~l~lLgi~p~ 440 (464)
|+++++.+|+||+.|+++... ....+|+.++.++..+|++++.||||.|+
T Consensus 576 l~~La~~fn~fy~~~~vl~~~~~~~~~RL~L~~a~~~vL~~gL~lLGI~ap 626 (629)
T 2zue_A 576 ANELASLFNKFYMDHPVLKAEEGVREARLLLVMAVEQVLKNALYLMGIEAP 626 (629)
T ss_dssp HHHHHHHHHHHHHHCCSTTSCTTHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 999999999999999887642 23568999999999999999999999887
No 18
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=100.00 E-value=1.5e-50 Score=429.84 Aligned_cols=381 Identities=13% Similarity=0.060 Sum_probs=280.1
Q ss_pred cceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHH---HH----------------------
Q 012397 39 KVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKI---IR---------------------- 93 (464)
Q Consensus 39 ~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i---~~---------------------- 93 (464)
++.|++|+|||||++||||+|++++||+++|++|++|++|.++++++|+|..+ +.
T Consensus 104 ~v~ve~~spn~~~~~HiGH~R~~iigD~laR~l~~~G~~V~~~~~i~D~G~q~~~li~~~~~~g~d~~~~~~~d~~~g~~ 183 (592)
T 1iq0_A 104 VVLVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAETLFALRHYGLTWDGKEKYDHFAGRA 183 (592)
T ss_dssp EEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECTTSHHHHHHHHHHHHTTCCCCSSSCHHHHHHHH
T ss_pred eEEEEeeCCCCCCCCcchHHHHHHHHHHHHHHHHHcCCceEEEeccCCcchHHHHHHHHHHHhCCcccCCCCcchhHHHH
Confidence 89999999999999999999999999999999999999999999999998532 11
Q ss_pred ---------------------HHHHcCCChHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchh--HHHHHHHHHHHHHCCc
Q 012397 94 ---------------------RANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDH--MEQIKDMITQIINNDC 150 (464)
Q Consensus 94 ---------------------~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~~~~~~r~s~~--~~~~~~~~~~L~~~G~ 150 (464)
++.+.|. .+++++.+.+.|.+++++|||++ |.+.++|++ .+.+++++++|.++|+
T Consensus 184 y~~~~~~~~~~~~~~~a~~~~~~~e~g~-~~~~~~~~~~~~~~~~~~LgI~~-D~~~~es~~~~~~~v~~~~~~L~~kG~ 261 (592)
T 1iq0_A 184 YVRLHQDPEYERLQPAIEEVLHALERGE-LREEVNRILLAQMATMHALNARY-DLLVWESDIVRAGLLQKALALLEQSPH 261 (592)
T ss_dssp HHHHHHCTTTGGGHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHHHHTTCCC-SEEEEHHHHHHTTHHHHHHHHHTTSTT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhCCchH-HHHHHHHHHHHHHHHHHHcCCEe-EEeccCCcccccchHHHHHHHHHHCCC
Confidence 1133454 48999999999999999999996 888898876 6789999999999999
Q ss_pred eE-----eecCcEEEcCCCCCCCCCCCC--ccccccccCCCcccCCcccCcccc--cccc-------cccCCCCcccCCC
Q 012397 151 AY-----VVEGDVFFAVEKSPNYGRLSG--QRLENNRAGERVAVDSRKRNPADF--ALWK-------AAKAGEPSWDSPW 214 (464)
Q Consensus 151 ~y-----~~~~~~~~~~~~~~~~g~l~~--~~~~~~~~g~~~~~~~~k~~~~d~--~~w~-------~~~~g~~~~~~~w 214 (464)
+| +.++..|+... .+|.-.+ ..+..-.+|... + ...|+ ++|| ..+ ..|..+|
T Consensus 262 ~y~~~~g~~~G~~~~~~~---~~g~~~~l~~~vi~ksdG~~~----Y--~~~D~a~~~~Kl~l~~~~~~~---~~~~~p~ 329 (592)
T 1iq0_A 262 VFRPREGKYAGALVMDAS---PVIPGLEDPFFVLLRSNGTAT----Y--YAKDIAFQFWKMGILEGLRFR---PYENPYY 329 (592)
T ss_dssp EECCSSSTTTTCEEEECT---TTSCSCSCCEEEEECTTSCBC----H--HHHHHHHHHHHTTSSCCCEEE---ECCCSSC
T ss_pred cccCcccCcCCCEEEech---hcCCCCCCCceEEEecCCceE----E--ecchHHHHHHHhhhhhhhhhh---hhhcCcc
Confidence 99 55666666543 3331000 000000122110 0 02344 4674 211 1245678
Q ss_pred CCCCCchhhHHHHHHHhhcCCCeeEEEecccCccccchHHHHHHhhccCCCCccEEEEe--eeeeeCCcccccccCCccC
Q 012397 215 GPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHN--GHVTNNNEKMSKSLGNFFT 292 (464)
Q Consensus 215 g~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h~~~~~a~~~a~~~~~~~~~~~~~--~~v~~~G~KmSks~gn~i~ 292 (464)
| +|.|+++|..|....++ ..|++.|.||. .|.....+...++|.+.+...+.|. |||+++|+|||||+||+|+
T Consensus 330 ~--r~~w~~~g~~~~~~~~~--~~iyV~g~~h~-~~~~~~~~~~~alG~~~~~~~~~H~~~g~v~~~g~KMSKr~Gn~v~ 404 (592)
T 1iq0_A 330 P--GLRTSAPEGEAYTPKAE--ETINVVDVRQS-HPQALVRAALALAGYPALAEKAHHLAYETVLLEGRQMSGRKGLAVS 404 (592)
T ss_dssp T--TCEEEEEEEEECCCCCS--EEEEEEESSSC-CCHHHHHHHHHHTTCHHHHTTEEEEEECCEEETTBCSCC----CCB
T ss_pred h--hhcccccCcccCCCCCC--EEEEEEeccHH-HHHHHHHHHHHHcCCCCCCCcEEEEEeeEEEcCCCcccCCCCCccC
Confidence 7 67998777665432343 34555555622 1111223334444542212223444 7899999999999999999
Q ss_pred HHHHHHh-------------------------cCchhHHHHHhhcCCCCccCCCHHHHHHHHH-HHHHHHHHHHHHHHhc
Q 012397 293 IRQITER-------------------------YHPLALRHFLISAHYRSPLNYSVLQLDSASD-AVFYIYQTLQDCEVAL 346 (464)
Q Consensus 293 ~~dll~~-------------------------~~~dalR~~ll~~~~~~~~~f~~~~~~~~~~-~l~~l~~~~~~~~~~l 346 (464)
++|++++ +|+|++|||+++..+.++++||++.+.+..+ ...+++|+++|+++++
T Consensus 405 l~dll~~~~~~~~~~~~~~~~~~~~~e~~a~~vg~~aiRyf~L~~~~~~~~~Fd~d~~~~~~~~~~~ylqya~aR~~sil 484 (592)
T 1iq0_A 405 VDEVLEEATRRARAIVEEKNPDHPDKEEAARMVALGAIRFSMVKTEPKKQIDFRYQEALSFEGDTGPYVQYAHARAHSIL 484 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCSCHHHHHHHHHHHHHHHHHHHSCTTSCEEECHHHHHCSSSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHhhcHHHHHHHHHhcCCCCCCeecHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 9999999 9999999999999889999999999998766 4569999999999999
Q ss_pred CccccCCC-----ccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhh-------cccCc-hhh
Q 012397 347 SPFQEHGK-----TARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNML-------KKKQP-KQQ 413 (464)
Q Consensus 347 ~~~~~~~~-----~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~-------~~~~~-~~~ 413 (464)
+++..... .++.|..|+..+.++++.+.+++ ++++++.++.. |+++++.+|+||+.| +++.. ...
T Consensus 485 ~k~~~~~~~~~~l~~~~e~~L~~~l~~~~~~v~~a~-~~~~p~~~~~y-l~~La~~fn~fy~~~~~~~~~~~vl~~~~~~ 562 (592)
T 1iq0_A 485 RKAGEWGAPDLSQATPYERALALDLLDFEEAVLEAA-EERTPHVLAQY-LLDLAASWNAYYNARENGQPATPVLTAPEGL 562 (592)
T ss_dssp HHHCCCCCCCGGGCCHHHHHHHHHHTTHHHHHHHHH-HHTCHHHHHHH-HHHHHHHHHHHHHCEETTEESSCSTTSCTTH
T ss_pred HhhcccCCCccCCCCHHHHHHHHHHHHHHHHHHHHH-HhCCHHHHHHH-HHHHHHHHHHHHHhccccccCCceeCCCHHH
Confidence 87642211 13345788999999999999999 89987777776 999999999999999 55443 223
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhccCCC
Q 012397 414 QLSLIESLRKIENEVKEVLRILGLLPP 440 (464)
Q Consensus 414 ~~~r~~~~~~~~~~l~~~l~lLgi~p~ 440 (464)
..+|+.++.++..+|++++.||||.|+
T Consensus 563 ~~~RL~L~~a~~~vl~~~l~lLGi~~~ 589 (592)
T 1iq0_A 563 RELRLSLVQSLQRTLATGLDLLGIPAP 589 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 567999999999999999999999886
No 19
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=100.00 E-value=8.1e-49 Score=432.26 Aligned_cols=206 Identities=17% Similarity=0.139 Sum_probs=172.9
Q ss_pred CCeeEEEecccCccccchHHHHHHhhccCC-CCccEEEEeeeeeeCCcccccccCCccCHHHHHHhcCchhHHHHHhh-c
Q 012397 235 SKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLIS-A 312 (464)
Q Consensus 235 ~~~~i~~~G~D~~~~h~~~~~a~~~a~~~~-~~~~~~~~~~~v~~~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~-~ 312 (464)
+|+|+|++|+||++||+.++.++..++.+. ++++.++|||||+++|+|||||+||+|+|.|++++||+|++|||+++ .
T Consensus 602 ~p~Di~~~G~D~~~~H~~~~~~~~~~~~~~~~~pk~v~~~G~v~~~G~KMSKS~GNvv~p~dli~~yGaDalR~~ll~~~ 681 (810)
T 1wkb_A 602 YPLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKGNVLNFIDAIEENGADVVRLYIMSLA 681 (810)
T ss_dssp CSCSEEEEEGGGTTTHHHHHHHHHHHHSCGGGSCCEEEEECCEEETTBCCCTTTTCCCBHHHHHHHHCHHHHHHHHHHHC
T ss_pred CCceEEeecccccccHHHHHHHHHHHHcCccccccEEEEEeEEEeCCeehhhcCCCcCCHHHHHHHcChHHHHHHHHhcC
Confidence 389999999999999999988877776653 55566688999999999999999999999999999999999999985 5
Q ss_pred CCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHH
Q 012397 313 HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQ 392 (464)
Q Consensus 313 ~~~~~~~f~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~ 392 (464)
++++|++|+++.+.+..+.+.+++++++++..... .......+.|++++.+++++++.+.++| ++++++.|+...++
T Consensus 682 ~~~~d~~fs~~~~~~~~~~l~rl~n~~~~~~~~~~--~~~~~~~~~d~~ll~~l~~~~~~v~~~~-~~~~~~~a~~~~~~ 758 (810)
T 1wkb_A 682 EHDSDFDWRRKEVGKLRKQIERFYELISQFAEYEV--KGNVELKDIDRWMLHRLNKAIKETTNAL-EEFRTRTAVQWAFY 758 (810)
T ss_dssp CTTCCEEECHHHHHHHHHHHHHHHHHHHHHHTCCC--CSCCCCCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHTH
T ss_pred CCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhccC--cccccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHH
Confidence 99999999999999999999999998877643211 0111123467899999999999999999 99999999986257
Q ss_pred HHHHHHHHHhhhhcccCchhhhhhHHHHHHHHHHHHHHHHHhhc-cCCCccHHHHHHHhh
Q 012397 393 DALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVKTAFL 451 (464)
Q Consensus 393 ~l~~~~n~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~l~lLg-i~p~~~~e~i~~~l~ 451 (464)
.+++.+|+|++..+.- .+.....++.++|+.++.+|+ |+|+ +||+||+.|+
T Consensus 759 ~l~~~~n~yi~~~k~~-------~~~~~~~~l~~~l~~l~~lLaP~~P~-~aEelw~~Lg 810 (810)
T 1wkb_A 759 SIMNDLRWYLRRTEGR-------DDEAKRYVLRTLADVWVRLMAPFTPH-ICEELWEKLG 810 (810)
T ss_dssp HHHHHHHHHHHHTTTC-------CCHHHHHHHHHHHHHHHHHHTTTSHH-HHHHHHHHCC
T ss_pred HHHHHHHHHHHHhcCc-------chhHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHhcC
Confidence 9999999999877631 121225688899999999999 9999 9999999875
No 20
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.5e-48 Score=435.28 Aligned_cols=217 Identities=17% Similarity=0.129 Sum_probs=183.5
Q ss_pred CCeeEEEecccCccccchHHHHHHhhccCC-CCccEEEEeeeeeeCCcccccccCCccCHHHHHHhcCchhHHHHHhh-c
Q 012397 235 SKFDIHGGGIDLIFPHHENEIAQSCAACQD-SNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLIS-A 312 (464)
Q Consensus 235 ~~~~i~~~G~D~~~~h~~~~~a~~~a~~~~-~~~~~~~~~~~v~~~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~-~ 312 (464)
+|+|+|++|+||++||+.++.++..++.+. ++++.+++||||+++|+|||||+||+|+|.|++++||+|++|||+++ .
T Consensus 602 ~P~Di~~~G~D~i~~H~~~~~~~~~a~~~~~~~pk~v~~~G~v~~~G~KMSKS~GNvv~p~d~i~~yGaDalR~~ll~~~ 681 (967)
T 1wz2_A 602 YPLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKGNVLNFIDAIEENGADVVRLYIMSLA 681 (967)
T ss_dssp CSCSEEEEEGGGTTTHHHHHHHHHHHHSCSTTSCCCEEEECCEEESSSCCCTTTCCCCBHHHHHHTTCHHHHHHHHHHHC
T ss_pred CCCeEEeeeeCcchhHHHHHHHHHHHHcCcccccceEEEeeEEeeCCEEccccccCCCCHHHHHHHhChHHHHHHHHhCC
Confidence 389999999999999999988887776653 55455688999999999999999999999999999999999999985 5
Q ss_pred CCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHH
Q 012397 313 HYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQ 392 (464)
Q Consensus 313 ~~~~~~~f~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~ 392 (464)
++++|++|+.+.+.+..+.+.+++++++++.... ..........|+|++++++++++++.++| ++|+++.|+...++
T Consensus 682 ~~~~d~~fs~~~~~~~~~~l~rl~n~~~~~~~~~--~~~~~~~~~~D~~il~~l~~~~~~v~~~~-e~~~f~~A~~~~~~ 758 (967)
T 1wz2_A 682 EHDSDFDWRRKEVGKLRKQIERFYELISQFAEYE--VKGNVELKDIDRWMLHRLNKAIKETTNAL-EEFRTRTAVQWAFY 758 (967)
T ss_dssp CTTCCEEECHHHHHHHHHHHHHHHHHHHHHHSSC--CCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHTH
T ss_pred CCCCCcccCHHHHHHHHHHHHHHHHHHHHHhcCC--CCCcccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHH
Confidence 8999999999999999999999999987764321 10111223468999999999999999999 99999999987246
Q ss_pred HHHHHHHHHhhhhcccCchhhhhhHHHHHHHHHHHHHHHHHhhc-cCCCccHHHHHHHhhhhHhHhcCCCC
Q 012397 393 DALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVKTAFLVLLHVFFDDSP 462 (464)
Q Consensus 393 ~l~~~~n~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~l~lLg-i~p~~~~e~i~~~l~~~~~~~~~~~~ 462 (464)
.+++.+|+|++.++.- .|.....+++++|+.++.+|+ |+|+ +||+||+.|+..-++++..||
T Consensus 759 ~l~~~~n~Yi~~~k~~-------~~~~~~~~l~~~l~~l~~LLaP~~P~-~aEeiw~~L~~~~sv~~~~wP 821 (967)
T 1wz2_A 759 SIMNDLRWYLRRTEGR-------DDEAKRYVLRTLADVWVRLMAPFTPH-ICEELWEKLGGEGFVSLAKWP 821 (967)
T ss_dssp HHHHHHHHHHHHTTTC-------CCHHHHHHHHHHHHHHHHHHTTTSHH-HHHHHHHHSSCCSCGGGSCCC
T ss_pred HHHHHHHHHHHhccch-------hHHHHHHHHHHHHHHHHHHhccccch-HHHHHHHhcCCCCceeccCCC
Confidence 8889999999887631 122455789999999999999 9999 999999999866688899888
No 21
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=100.00 E-value=2.1e-48 Score=428.38 Aligned_cols=403 Identities=14% Similarity=0.095 Sum_probs=300.8
Q ss_pred EEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q 012397 42 MYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQ 121 (464)
Q Consensus 42 v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lg 121 (464)
+..++|+|||.|||||+|+++++|+++|++|++|++|.++.|+|+||.+|+.+|.+.|++++++++++.+.|.+++++||
T Consensus 37 v~~~~Py~nG~lHiGHa~~~~~~Dvl~Ry~rm~G~~V~~~~G~D~~Glpie~~a~k~g~~~~~~~~~~~~~~~~~~~~LG 116 (878)
T 2v0c_A 37 VLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKESLRLMG 116 (878)
T ss_dssp EEECCCCCSSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBCCSSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTT
T ss_pred EECCCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCceEeecccCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhC
Confidence 33345899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC---CCCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCC-------------CCC-CCCC-------------
Q 012397 122 CLPP---TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK-------------SPN-YGRL------------- 171 (464)
Q Consensus 122 i~~~---~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~-------------~~~-~g~l------------- 171 (464)
++.+ ...+...+|.+.++++|.+|+++|++|++.+.++||+.| |+. ||..
T Consensus 117 i~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliY~~~~~v~w~p~~~t~La~~ev~~g~~~~~~~~~~~~~~~~~~f~~l 196 (878)
T 2v0c_A 117 ILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLANEQVVEGRCWRHEDTPVEKRELEQWYLRI 196 (878)
T ss_dssp CCCCGGGCCBTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEETTEESSCTTCBCEEEEEEEEEECG
T ss_pred CccCcCCCeecCCHHHHHHHHHHHHHHHHCCCEEEcceeEEEeCCCCCCcCHHHHhcCCCcccCCCceEEEecceeeEec
Confidence 9963 122444489999999999999999999999999999885 455 6531
Q ss_pred CC---c---cccc------------------------c-ccC-----------------C--------------------
Q 012397 172 SG---Q---RLEN------------------------N-RAG-----------------E-------------------- 183 (464)
Q Consensus 172 ~~---~---~~~~------------------------~-~~g-----------------~-------------------- 183 (464)
+. . .++. . ..| .
T Consensus 197 ~~~~~~L~~~l~~~~~p~~~~~~~~~wi~~s~g~~v~f~~~~~~~~l~v~TTrP~Tl~g~~~vav~pe~~~~~~~~~~~~ 276 (878)
T 2v0c_A 197 TAYAERLLKDLEGLNWPEKVKAMQRAWIGRSEGAEILFPVEGKEVRIPVFTTRPDTLFGATFLVLAPEHPLTLELAAPEK 276 (878)
T ss_dssp GGGHHHHHHTTTTCBSCHHHHHHHHHHHCEEEEEEEEEEBTTSSCEEEEEESCGGGGGGCCEEEECTTSHHHHHHSCGGG
T ss_pred chhHHHHHHHhhhcCCCHHHHHHHHHHhccccCceEEEEecCCCceEEEEeCCchhhhCcEEEEEcCCCeeeehhccchh
Confidence 00 0 0000 0 000 0
Q ss_pred ---------------------------------C-----------------cccCC--------cccCccccccccc---
Q 012397 184 ---------------------------------R-----------------VAVDS--------RKRNPADFALWKA--- 202 (464)
Q Consensus 184 ---------------------------------~-----------------~~~~~--------~k~~~~d~~~w~~--- 202 (464)
. |..+. .-+.+.||..++.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~~P~~~~~ipi~~~~~V~~~~GTG~V~~~PaHd~~D~~~~~k~~L 356 (878)
T 2v0c_A 277 REEVLAYVEAAKRKTEIERQAEGREKTGVFLGAYALNPATGERIPIWTADYVLFGYGTGAIMAVPAHDQRDYEFARKFGL 356 (878)
T ss_dssp HHHHHHHHHHHHTSCHHHHHCSSSCCCCEEEEEEEECTTTCCEEEEEECTTSCTTSTTSEEEECTTTCHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhhhhhhhhhhccceeeeEecCcEEECCCCCCEeEEEEeCcccCCCCCceEEeCCCCCHHHHHHHHHcCC
Confidence 0 00000 0000112211100
Q ss_pred --------------------------------------------------------------ccCCCCcccCCCCCCCCc
Q 012397 203 --------------------------------------------------------------AKAGEPSWDSPWGPGRPG 220 (464)
Q Consensus 203 --------------------------------------------------------------~~~g~~~~~~~wg~~~P~ 220 (464)
.++..++|+..||.++|.
T Consensus 357 ~i~~vi~~~~~~~~~~~~~~~~~~g~~~ns~~~~Gl~~~eA~~~Ii~~L~~~g~~~~~v~~rlrDW~ISRQR~WG~PIPi 436 (878)
T 2v0c_A 357 PIKKVIERPGEPLPEPLERAYEEPGIMVNSGPFDGTESEEGKRKVIAWLEEKGLGKGRVTYRLRDWLISRQRYWGTPIPM 436 (878)
T ss_dssp CCCCCEECSSSCCCSSCSSCCCSCCEECSSGGGTTCBHHHHHHHHHHHHHHHTSEEEEEEESCCCEECEESCSSSEECCE
T ss_pred CceeeeCCCCccccccccccccCCeeEecCCCCCCcCHHHHHHHHHHHHHHCCCCCCceEEecccchhhcccccCCcccE
Confidence 011123566789999998
Q ss_pred hhhH-HH-------------------H-HH------------------------------------------Hhhc----
Q 012397 221 WHIE-CS-------------------A-MS------------------------------------------AHYL---- 233 (464)
Q Consensus 221 w~~~-~~-------------------~-~~------------------------------------------~~~~---- 233 (464)
|+.+ |. . .. ..+.
T Consensus 437 ~~~~~~~~v~v~~~~lpv~lp~~~~~~~~~~~g~~pl~~~~~~~~~~cp~cg~~~~retDtmDtwfdSsw~~~~~~~p~~ 516 (878)
T 2v0c_A 437 VHCEACGVVPVPEEELPVLLPDLKDVEDIRPKGKSPLEAHPEFYETTCPKCGGPAKRDTDTMDTFFDSSWYYLRYTDPHN 516 (878)
T ss_dssp EEETTTEEEECCGGGCCCCCCCCCCHHHHSCSSSCGGGGCHHHHEEECTTTCSEEEECCCEECHHHHHTSHHHHTTSTTC
T ss_pred EEECCCCeEecCHHHccccccchhhhhccccCCCChhhhhHhhcCCcCCCCCCcceeccccccccccccchhhhccCccc
Confidence 7631 10 0 00 0000
Q ss_pred -----C-------CCeeEEEecccCccccchH---HHHHHhhcc----CCCCccEEEEeeeeee----------------
Q 012397 234 -----S-------SKFDIHGGGIDLIFPHHEN---EIAQSCAAC----QDSNVSYWMHNGHVTN---------------- 278 (464)
Q Consensus 234 -----~-------~~~~i~~~G~D~~~~h~~~---~~a~~~a~~----~~~~~~~~~~~~~v~~---------------- 278 (464)
. .|+|++++|.||...|..+ |...+...+ ..||.++ +.||||+.
T Consensus 517 ~~~~~~~~~~~~~~P~D~yi~G~d~~ilhl~y~r~~~~~l~~~g~~~~~~Pfk~l-~~~G~vl~~~~~~~~~~~~~~~~~ 595 (878)
T 2v0c_A 517 DRLPFDPEKANAWMPVDQYIGGVEHAVLHLLYSRFFTKFLHDLGMVKVEEPFQGL-FTQGMVLAWTDFGPVEVEGSVVRL 595 (878)
T ss_dssp SSSSCCHHHHHHHCSBSEEECCGGGTTTHHHHHHHHHHHHHHTTSCSCSCSBSBE-ECCCCEEEEEEEEEEEEETTEEEC
T ss_pred cccccCHHHHccCCCCeEEEechHHHHHHHHHHHHHHHHHHHhhcccCCCchHhh-eecceEeccceeccccccccceec
Confidence 0 3899999999987666432 333333333 2467777 55799985
Q ss_pred -------------------------------CC-------cccccccCCccCHHHHHHhcCchhHHHHHhh-cCCCCccC
Q 012397 279 -------------------------------NN-------EKMSKSLGNFFTIRQITERYHPLALRHFLIS-AHYRSPLN 319 (464)
Q Consensus 279 -------------------------------~G-------~KmSks~gn~i~~~dll~~~~~dalR~~ll~-~~~~~~~~ 319 (464)
+| +|||||+||+|+|.|++++||+|++|||+++ .++++|++
T Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~KMSKSkGNvVdP~diI~~yGADalRl~ll~~~~~~~D~~ 675 (878)
T 2v0c_A 596 PEPTRIRLEIPESALSLEDVRKMGAELRPHEDGTLHLWKPAVMSKSKGNGVMVGPFVKEQGADIARITILFAAPPENEMV 675 (878)
T ss_dssp CHHHHHHHTCSCSEEEHHHHHHTTCEEEECTTSSEEEEEEEECSGGGTCCCBHHHHHHHSCHHHHHHHHHHHSCTTSCEE
T ss_pred cccccccccccCchhhhhccccccceeeccCCCCchhhhHHHhhccCCCcccHHHHHHHcCccHHHHHHhccCCCCCCce
Confidence 89 8999999999999999999999999999998 59999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcC-ccc--cCCCccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHH
Q 012397 320 YSVLQLDSASDAVFYIYQTLQDCEVALS-PFQ--EHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALK 396 (464)
Q Consensus 320 f~~~~~~~~~~~l~~l~~~~~~~~~~l~-~~~--~~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~ 396 (464)
|+++.+.+..+.+.++++++......+. ... .....+..|++++++++++++++.++| ++|+++.|++. |++|++
T Consensus 676 fs~~~v~~~~~~l~Rl~n~~~~~~~~~~~~~~~~~~~~l~~~D~~ll~~l~~~i~~v~~~~-e~~~f~~Ai~~-l~~f~~ 753 (878)
T 2v0c_A 676 WTEEGVQGAWRFLNRIYRRVAEDREALLETSGVFQAEALEGKDRELYGKLHETLKKVTEDL-EALRFNTAIAA-LMEFLN 753 (878)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHH-HHHHHH
T ss_pred eCHHHHHHHHHHHHHHHHHHHHHHhcccccccccCcccCCHHHHHHHHHHHHHHHHHHHHH-HcccHHHHHHH-HHHHHH
Confidence 9999999999999999998765543321 000 001124568999999999999999999 99999999999 999999
Q ss_pred HHHHHhhhhcccCchhhhhhHHHHHHHHHHHHHHHHHhhc-cCCCccHHHHHHHhhhhHhHhcCCCC
Q 012397 397 FINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILG-LLPPGAYSEVKTAFLVLLHVFFDDSP 462 (464)
Q Consensus 397 ~~n~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~l~lLg-i~p~~~~e~i~~~l~~~~~~~~~~~~ 462 (464)
.+|+|.+... .. .++.++|+.++.+|+ |+|+ +||+||+.|+ .-++++..||
T Consensus 754 ~l~k~~~~~~---------~~----~~l~~~l~~l~~LLaPf~P~-~aEElw~~Lg-~~sv~~~~wP 805 (878)
T 2v0c_A 754 ALYEYRKDRP---------VT----PVYRTAIRYYLQMLFPFAPH-LAEELWHWFW-PDSLFEAGWP 805 (878)
T ss_dssp HHHHHHHHCC---------SC----HHHHHHHHHHHHHHTTTSHH-HHHHHHHHHC-SSCGGGSCCC
T ss_pred HHhhhcccch---------hH----HHHHHHHHHHHHHHcccchH-HHHHHHHHcC-CCceeecCCC
Confidence 9999965310 01 467889999999999 9999 9999999998 5578888888
No 22
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=100.00 E-value=9.7e-47 Score=398.84 Aligned_cols=361 Identities=12% Similarity=0.063 Sum_probs=277.6
Q ss_pred CCCcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHH------------------------
Q 012397 36 VRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKI------------------------ 91 (464)
Q Consensus 36 ~~~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i------------------------ 91 (464)
.+++|.|++|||||+|++||||+|++++||+|+|+|++.|++|.++++++|+|..+
T Consensus 141 ~~~~V~ve~~spN~~~plHvGHlRs~iiGD~laRil~~~G~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~~~i~~l 220 (607)
T 1f7u_A 141 ENKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFERYGNEEALVKDPIHHL 220 (607)
T ss_dssp SCCEEEEECCCCBTTSCCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHHHHCCHHHHHHCHHHHH
T ss_pred CCCeEEEEecCCCCCCCCccchHHHHHHHHHHHHHHHHcCCCeeEEEeecCcchHHHHHHHHHHHhCchhhccCCChHHH
Confidence 46899999999999999999999999999999999999999999999999987653
Q ss_pred ------------------------HHHHHH------cCCC-----hHHHHHHHHHHHHHHHHhcCCCCCCCCCCcchhH-
Q 012397 92 ------------------------IRRAND------LGEN-----PLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHM- 135 (464)
Q Consensus 92 ------------------------~~~a~~------~g~~-----~~~~~~~~~~~~~~~l~~lgi~~~~~~~r~s~~~- 135 (464)
..+|++ .|.+ |+.+++.+...|.+++++|||.+ |.++++|++.
T Consensus 221 ~~~Y~~~~~~~~~~~e~g~~~~~i~~~A~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~L~V~f-D~~~~ES~~~~ 299 (607)
T 1f7u_A 221 FDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKYIDTYARLNIKY-DVYSGESQVSK 299 (607)
T ss_dssp HHHHHHHHHHHHHSTTSSCHHHHSSHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCC-SEEEEGGGCCH
T ss_pred HHHHHHHHHHhhhccccccccHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcc-eeecCcchhhh
Confidence 233443 3655 68899999999999999999986 8888988876
Q ss_pred HHHHHHHHHHHHCCceEeecCcEEEcCCCCCCCCCCCCccccccccCCCcccCCcccCcccccccccccCCCCcccCCCC
Q 012397 136 EQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWG 215 (464)
Q Consensus 136 ~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~~g~l~~~~~~~~~~g~~~~~~~~k~~~~d~~~w~~~~~g~~~~~~~wg 215 (464)
+.+.+++++|.++|++|+.++.+|+....+ |. .+. +..+ ..++|.++|...
T Consensus 300 ~~~~~vi~~L~~kG~~ye~dGa~~~~~~~~---g~----~~d------------------~~v~--~KsDG~~~Y~t~-- 350 (607)
T 1f7u_A 300 ESMLKAIDLFKEKGLTHEDKGAVLIDLTKF---NK----KLG------------------KAIV--QKSDGTTLYLTR-- 350 (607)
T ss_dssp HHHHHHHHHHHHTTCEEEETTEEEEEGGGT---CT----TTC------------------EEEE--ECTTSCCCHHHH--
T ss_pred hHHHHHHHHHHhCCCEEEECCcEEEEeccc---CC----CCC------------------ceeE--eccCCCcCCCCC--
Confidence 789999999999999999999999976643 21 000 0111 112333222110
Q ss_pred CCCCchhhHHHHHH--HhhcCCCeeEEEecccCccccchHHHHHHhhccCCCCccEEEEeeeeeeCCcccccccCCccCH
Q 012397 216 PGRPGWHIECSAMS--AHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTI 293 (464)
Q Consensus 216 ~~~P~w~~~~~~~~--~~~~~~~~~i~~~G~D~~~~h~~~~~a~~~a~~~~~~~~~~~~~~~v~~~G~KmSks~gn~i~~ 293 (464)
.+++.... ...++..++|+..|.|..|.+. .+...++|. ++...|.|.+|.+++ |||||+||+|++
T Consensus 351 ------Dia~~~~k~~~~~~d~~IyV~g~~q~~~f~q~---~~~~~~lG~-~~~~~~~Hv~fg~v~--kMSkR~G~~v~L 418 (607)
T 1f7u_A 351 ------DVGAAMDRYEKYHFDKMIYVIASQQDLHAAQF---FEILKQMGF-EWAKDLQHVNFGMVQ--GMSTRKGTVVFL 418 (607)
T ss_dssp ------HHHHHHHHHHHHCCSEEEEECCGGGHHHHHHH---HHHHHHTTC-GGGGGEEEECCCCEE--SCCGGGTCCCBH
T ss_pred ------cHHHHHHHHhhcCCCcEEEEEcChHhhHHHHH---HHHHHHcCC-CcCcEEEEecccccc--cccCCCCCcccH
Confidence 01111010 1134445666666666444332 333444554 455568998886665 699999999999
Q ss_pred HHHHHhcCc----------------------------hhHHHHHhhcCCCCccCCCHHHHHHHHHHH-HHHHHHHHHHHH
Q 012397 294 RQITERYHP----------------------------LALRHFLISAHYRSPLNYSVLQLDSASDAV-FYIYQTLQDCEV 344 (464)
Q Consensus 294 ~dll~~~~~----------------------------dalR~~ll~~~~~~~~~f~~~~~~~~~~~l-~~l~~~~~~~~~ 344 (464)
+|++++++. .++||++++.++.++++||++.+.+..++. .|+||+++|+++
T Consensus 419 ~dLlde~~~~a~~~~~~~~~~~~~~~e~~~~a~~vgi~avry~~Ls~~~~s~~~Fd~d~~~~~~g~t~pylqYa~aRi~S 498 (607)
T 1f7u_A 419 DNILEETKEKMHEVMKKNENKYAQIEHPEEVADLVGISAVMIQDMQGKRINNYEFKWERMLSFEGDTGPYLQYAHSRLRS 498 (607)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHTTCSCHHHHHHHHHHHHHHHHHHSSCTTCCEECCHHHHHCCSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccccchhhHHHHHHHHHHHHHHHHHhccCCCCCcccCHHHHHHHhccchHHHHHHHHHHHH
Confidence 999998733 589999999999999999999999887654 599999999999
Q ss_pred hcCcccc-C-------C---CccCCChhHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhcccCch-h
Q 012397 345 ALSPFQE-H-------G---KTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPK-Q 412 (464)
Q Consensus 345 ~l~~~~~-~-------~---~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~~~~~~~-~ 412 (464)
+++++.. . . ..++.+..|+..|.++++.+.+++ +++. |+.++.||++++..+|+||+.|++.... .
T Consensus 499 Ilrka~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~vv~~a~-~~~~-P~~l~~Yl~~La~~fn~fY~~~~Vl~~~~~ 576 (607)
T 1f7u_A 499 VERNASGITQEKWINADFSLLKEPAAKLLIRLLGQYPDVLRNAI-KTHE-PTTVVTYLFKLTHQVSSCYDVLWVAGQTEE 576 (607)
T ss_dssp HHHHTTTSCHHHHTTSCGGGCCSHHHHHHHHHHTTHHHHHHHHH-HHCC-HHHHHHHHHHHHHHHHHHHHHCCSTTSCHH
T ss_pred HHHHhcCCCcccccccchhhcCCHHHHHHHHHHHHHHHHHHHHH-HhcC-HHHHHHHHHHHHHHHHHHHHhCCCCCCCHH
Confidence 9987621 0 0 113456789999999999999999 7876 5566666999999999999999997643 3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhccCCC
Q 012397 413 QQLSLIESLRKIENEVKEVLRILGLLPP 440 (464)
Q Consensus 413 ~~~~r~~~~~~~~~~l~~~l~lLgi~p~ 440 (464)
...+|+.++.++..+|++++.||||.|+
T Consensus 577 ~~~aRL~L~~a~~~vL~~gL~LLGI~~p 604 (607)
T 1f7u_A 577 LATARLALYGAARQVLYNGMRLLGLTPV 604 (607)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 3568999999999999999999999887
No 23
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=100.00 E-value=9.4e-45 Score=371.88 Aligned_cols=359 Identities=16% Similarity=0.134 Sum_probs=265.6
Q ss_pred CCCcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHH-------HHHHHH--cCCC-----
Q 012397 36 VRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKI-------IRRAND--LGEN----- 101 (464)
Q Consensus 36 ~~~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i-------~~~a~~--~g~~----- 101 (464)
.+++|.|..++|||+|++||||+|++++||+++|++++.|++|...++++|+|..+ ..++.+ .|.+
T Consensus 28 ~~~~v~vE~ss~n~~~~~h~gh~r~~~~gd~~~r~~~~~G~~v~r~nyi~D~G~Q~g~l~~~~~~~y~~~~~~~~~~~p~ 107 (464)
T 3fnr_A 28 KQESFLLEYVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDAGNQIYLLGLSILLSVKESILHENVEYPE 107 (464)
T ss_dssp CSCEEEEECCCCCSSSSCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHHHHHHHHHHHHTSCCCCCCCS
T ss_pred CCCEEEEEeCCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEeeeCCccHHHHHHHHHHHHHHHHHhcCCCCCCch
Confidence 35799999999999999999999999999999999999999999999999999876 223232 1211
Q ss_pred --------------------------------hHHHHHHHHHHHHHHHHhcCCCCCCCCCCc-chhHHHHHHHHHHHHHC
Q 012397 102 --------------------------------PLSLSNRYCQEYLVDMADLQCLPPTYQPRV-SDHMEQIKDMITQIINN 148 (464)
Q Consensus 102 --------------------------------~~~~~~~~~~~~~~~l~~lgi~~~~~~~r~-s~~~~~~~~~~~~L~~~ 148 (464)
++...+...+.|.+++++|||.+ |.+... +-+. .+.+++++|.++
T Consensus 108 ~~y~g~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~V~f-D~~~~Ess~~~-~~~~vv~~L~~~ 185 (464)
T 3fnr_A 108 QYYKGEYIVDLAKEAFEKFGKEFFSEENIPSLADWAKDKMLVLIKQNLEQAKIKI-DSYVSERSYYD-ALNATLESLKEH 185 (464)
T ss_dssp SCCCSHHHHHHHHHHHHHHCGGGCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCC-SCEEEGGGGST-THHHHHHHHHHT
T ss_pred hhcCccHHHHHHHHHHHhcchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-eeecCHHHHHH-HHHHHHHHHHHC
Confidence 01223344567889999999996 555444 4444 889999999999
Q ss_pred CceEeecCcEEEcCCCCCCCCCCCCccccccccCCCcccCCcccCcccccccccccCCCCcccCCCCCCCCchhhH-HHH
Q 012397 149 DCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIE-CSA 227 (464)
Q Consensus 149 G~~y~~~~~~~~~~~~~~~~g~l~~~~~~~~~~g~~~~~~~~k~~~~d~~~w~~~~~g~~~~~~~wg~~~P~w~~~-~~~ 227 (464)
|++|+.++..|+..... | .+.|..+-| ++|. |.|.-. .++
T Consensus 186 g~~~e~dGa~~~~~~~~----------------g----------~~~~~vl~k--sDG~-----------~~Y~t~DiA~ 226 (464)
T 3fnr_A 186 KGIYEQEGKIWLASSQK----------------G----------DEKDRVIIR--EDGR-----------GTYLAADIVY 226 (464)
T ss_dssp TCEEEETTEEEECGGGG----------------T----------CSSCEEEEC--TTSC-----------BCHHHHHHHH
T ss_pred CCEEEeCCeEEEEeccc----------------C----------CCCceEEEe--CCCc-----------eehhhHHHHH
Confidence 99999999888865421 1 001222322 2443 333311 111
Q ss_pred HHHhh-cCCCeeEEEecccCccccchHHHHHHhhccCCCCccEEEEeeeeee--CCc--ccccccCCccCHHHHHHhcCc
Q 012397 228 MSAHY-LSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTN--NNE--KMSKSLGNFFTIRQITERYHP 302 (464)
Q Consensus 228 ~~~~~-~~~~~~i~~~G~D~~~~h~~~~~a~~~a~~~~~~~~~~~~~~~v~~--~G~--KmSks~gn~i~~~dll~~~~~ 302 (464)
...++ .+..-.|++.|.||.- |.....+.+.++|..++.-..+++|+|++ +|+ |||||+||+|+|.|+++++|+
T Consensus 227 ~~~r~~~~~d~~Iyv~G~dq~~-~f~~l~~~l~~lG~~~~~~~h~~~g~V~l~~dG~~~KMSKr~Gn~v~l~dll~~~g~ 305 (464)
T 3fnr_A 227 HKDKMSRGYGKCINIWGADHHG-YIPRMKAAMEFLGFDSNNLEIILAQMVSLLKDGEPYKMSKRAGNFILMSDVVDEIGS 305 (464)
T ss_dssp HHHHHTSSCSEEEEEEEGGGGG-GHHHHHHHHHTTTCCGGGEEEEEECCEEEEETTEECCC---CCSSCBHHHHHHHHCH
T ss_pred HHHHHHcCCCeEEEEecCcHHH-HHHHHHHHHHHcCCCccceEEEEeeeEEecCCCcccCCcCcCCCCCCHHHHHhhccH
Confidence 11121 1334568889999541 22223344445555443313356799966 886 999999999999999999999
Q ss_pred hhHHHHHhhcCCCCccCCCHHHHHHHH--HHHHHHHHHHHHHHHhcCccccCC---------CccCCChhHHHHHHHHHH
Q 012397 303 LALRHFLISAHYRSPLNYSVLQLDSAS--DAVFYIYQTLQDCEVALSPFQEHG---------KTARINPAAEDCINKLRD 371 (464)
Q Consensus 303 dalR~~ll~~~~~~~~~f~~~~~~~~~--~~l~~l~~~~~~~~~~l~~~~~~~---------~~~~~d~~l~~~l~~~~~ 371 (464)
|++|||+++.++.++++|+++.+.+.. |...+++|+++|++++++++.... ...+.|++|+..+.++++
T Consensus 306 dalRy~~l~~~~~~d~~Fd~~~~~~~~n~npv~YlqYa~aRi~silrk~~~~~~~~~~~~~~~L~~~e~~Ll~~L~~~~~ 385 (464)
T 3fnr_A 306 DALRYIFLSKKCDTHLEFDISDLQKEDSSNPVYYINYAHARIHQVFAKAGKKIDDVMKADLQSLNQDGVNLLFEALNLKA 385 (464)
T ss_dssp HHHHHHTTSSCTTSCEEEEGGGGGCCSTTSHHHHHHHHHHHHHHHHHHTTCCTTTSTTCCCTTCCHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHhcCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhccCCCccccChhhCChHHHHHHHHHHHHHH
Confidence 999999999989999999999998654 345699999999999987764211 111227899999999999
Q ss_pred HHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhcccCch-hhhhhHHHHHHHHHHHHHHHHHhhccCCC
Q 012397 372 EFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPK-QQQLSLIESLRKIENEVKEVLRILGLLPP 440 (464)
Q Consensus 372 ~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~~~~~~~-~~~~~r~~~~~~~~~~l~~~l~lLgi~p~ 440 (464)
.+.+++ ++++++.++.. |++++..+|+||+.|++.... +...+|+.++.++ +|++++.||||.||
T Consensus 386 ~v~~a~-~~~ep~~i~~y-L~~La~~~n~fY~~~~vl~~~~~~~~aRL~L~~a~--vL~~gL~lLGi~ap 451 (464)
T 3fnr_A 386 VLNDAF-EARALQKIPDY-LKNLAANFHKFYNENKVVGSANENDLLKLFSLVAL--SIKTAFSLMGIEAK 451 (464)
T ss_dssp HHHHHH-HHTCTTHHHHH-HHHHHHHHHHHHHHCCCTTSTTHHHHHHHHHHHHH--HHHHHHHHTTCCCC
T ss_pred HHHHHH-HcCCHHHHHHH-HHHHHHHHHHHHHhCcCCCCCHHHHHHHHHHHHHH--HHHHHHHhcCCCch
Confidence 999999 89998888777 999999999999999997643 3467899999999 99999999999887
No 24
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=100.00 E-value=5.2e-42 Score=360.04 Aligned_cols=271 Identities=15% Similarity=0.200 Sum_probs=212.2
Q ss_pred EEEe--CCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCcccc--HHH---HHHHHHc--CCCh----------
Q 012397 42 MYVC--GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVD--DKI---IRRANDL--GENP---------- 102 (464)
Q Consensus 42 v~~~--~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g--~~i---~~~a~~~--g~~~---------- 102 (464)
.|+| +|||||++||||+|+++++|+++|+|+++|++|.|+.++||+| .+| +.++.++ |+++
T Consensus 21 ~yv~~tgPsPtG~lHIGhaR~al~~D~laR~l~~~g~~v~fi~~idD~d~~rkip~~~~~a~~~~~G~~~~~~p~p~~~~ 100 (523)
T 1irx_A 21 KYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEWKDYLGMPISEVPDPWGCH 100 (523)
T ss_dssp EEEEEEEECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCCSSSCGGGGGGTTSBGGGSCCTTSSS
T ss_pred eEEECCCCCCCCCcccCCcHHHHHHHHHHHHHHHcCCCEEEEEeeCCcchhhhhhhHHHHHHHHHcCCCcccCCcchhhH
Confidence 4555 9999999999999999999999999999999999999999999 777 6666666 8888
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCCcch-hHH-HHHHHHHHHHHCC-ce---------------EeecCcEEEcC-C
Q 012397 103 LSLSNRYCQEYLVDMADLQCLPPTYQPRVSD-HME-QIKDMITQIINND-CA---------------YVVEGDVFFAV-E 163 (464)
Q Consensus 103 ~~~~~~~~~~~~~~l~~lgi~~~~~~~r~s~-~~~-~~~~~~~~L~~~G-~~---------------y~~~~~~~~~~-~ 163 (464)
+++++++.+.|.++|++|||++ |.+ ++|+ |.+ .+++++++|+++| .| |.. + |+.. .
T Consensus 101 ~~~~~~~~~~~~~~l~~Lgi~~-D~~-~~se~~~~g~~~~~i~~L~~~G~~iy~~~~~~~g~~~~~~y~~--~-~~~~~~ 175 (523)
T 1irx_A 101 ESYAEHFMRKFEEEVEKLGIEV-DLL-YASELYKRGEYSEEIRLAFEKRDKIMEILNKYREIAKQPPLPE--N-WWPAMV 175 (523)
T ss_dssp SSHHHHHHHHHHHHHHTTTCCC-EEE-EHHHHHHTTTTHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCCT--T-CCSEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCc-eEE-echhhccchHHHHHHHHHHHchHHHHHHHHhhccccccccccC--C-ceeccc
Confidence 9999999999999999999974 777 8888 888 8999999999999 44 432 1 3332 2
Q ss_pred CCCCCCCCCCccccccccCCCcccCCcccCcccccccccccCCCCcccCCC-CCCCCchhhHHHHHHHhhcCCCeeEEEe
Q 012397 164 KSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSWDSPW-GPGRPGWHIECSAMSAHYLSSKFDIHGG 242 (464)
Q Consensus 164 ~~~~~g~l~~~~~~~~~~g~~~~~~~~k~~~~d~~~w~~~~~g~~~~~~~w-g~~~P~w~~~~~~~~~~~~~~~~~i~~~ 242 (464)
-|+.||++... + +.. + . .+.+|.+ +.|.++|...| |.++|+|+++| +|.+.+++..++ ++
T Consensus 176 ~~~~~~~~~~~-~-~~~-~--------~-~~~~f~~----~~g~~~~~d~~~G~g~~~w~~d~-~~~~~~l~~~vd--~~ 236 (523)
T 1irx_A 176 YCPEHRREAEI-I-EWD-G--------G-WKVKYKC----PEGHEGWVDIRSGNVKLRWRVDW-PMRWSHFGVDFE--PA 236 (523)
T ss_dssp ECTTTCCEECE-E-EEC-S--------S-SCEEECC----SSSCCCEECTTSSCEEECHHHHH-HHHHHHSCCCBC--CE
T ss_pred cchhhCCcccc-c-ccC-C--------C-Cceeeee----cCCCccccCCcCCCCCCCCCcch-HhhHHHcCCCCc--CC
Confidence 37778875432 1 111 1 1 2334444 46788899999 99999999998 677778876555 88
Q ss_pred cccCcccc----chHHHHHHhhccCCCCccEEEEeeeeeeC--CcccccccCCccCHHHHHHhcCchhHHHHHhhcCCCC
Q 012397 243 GIDLIFPH----HENEIAQSCAACQDSNVSYWMHNGHVTNN--NEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRS 316 (464)
Q Consensus 243 G~D~~~~h----~~~~~a~~~a~~~~~~~~~~~~~~~v~~~--G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~~~~~ 316 (464)
|+||+++| +..++++ .+++.++| .++|+++++++ |+|||||+||+|++.|+++.|++|++|||+++.++.+
T Consensus 237 G~Dh~~~h~s~~~~~~i~~-~alG~~~p--~~~h~~~i~~~g~g~KmSKs~Gn~i~~~~~~~~~~pdalR~~l~~~~~~~ 313 (523)
T 1irx_A 237 GKDHLVAGSSYDTGKEIIK-EVYGKEAP--LSLMYEFVGIKGQKGKMSGSKGNVILLSDLYEVLEPGLVRFIYARHRPNK 313 (523)
T ss_dssp EHHHHSTTSHHHHHHHHHH-HHHCCCCC--BCCEECCEEESCC---------CCCCHHHHHTTSCHHHHHHHHHSSCTTS
T ss_pred CcCccCCCcchhhHHHHHH-HHhCCCCC--eEEEEEEEEeCCCCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHhcCCCC
Confidence 99999999 5677774 46665555 46899999997 8899999999999999999999999999999888899
Q ss_pred ccCCCHH-HHHHHHHHHHHHHHHH
Q 012397 317 PLNYSVL-QLDSASDAVFYIYQTL 339 (464)
Q Consensus 317 ~~~f~~~-~~~~~~~~l~~l~~~~ 339 (464)
+++|+++ .+.+..+.+.++++++
T Consensus 314 ~~~fs~~~~l~~~~~~~~~~~~~~ 337 (523)
T 1irx_A 314 EIKIDLGLGILNLYDEFEKVERIY 337 (523)
T ss_dssp CEEECCSTTHHHHHHHHHHHHHHH
T ss_pred CceeCcchhHHHHHHHHHHHHHHH
Confidence 9999999 8888887777666644
No 25
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=99.93 E-value=1.2e-26 Score=238.78 Aligned_cols=254 Identities=17% Similarity=0.123 Sum_probs=180.0
Q ss_pred eCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCC
Q 012397 45 CGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLP 124 (464)
Q Consensus 45 ~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~ 124 (464)
-+|+|||.|||||||++++.+.+|| ...| .++..+||.+. .....+|.+.|.++|++||+.+
T Consensus 31 FaPSPtG~LHIGhaRtal~n~l~Ar--~~gG---~fiLRieDTD~-------------~R~~~e~~~~I~edL~wLGl~w 92 (553)
T 1qtq_A 31 FPPEPNGYLHIGHAKSICLNFGIAQ--DYKG---QCNLRFDDTNP-------------VKEDIEYVESIKNDVEWLGFHW 92 (553)
T ss_dssp ECCCTTSCCBHHHHHHHHHHHHHHH--HTTC---EEEEEECCCCG-------------GGCCHHHHHHHHHHHHHTTCCC
T ss_pred eCCCCCCCccHHHHHHHHHHHHHHH--HcCC---EEEEEECCCCc-------------hhcCHHHHHHHHHHHHHcCCCC
Confidence 3699999999999999999888887 3444 55555555553 1235578999999999999998
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCC--------CCC------CCCCCCcc-c---cccccCC---
Q 012397 125 PTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK--------SPN------YGRLSGQR-L---ENNRAGE--- 183 (464)
Q Consensus 125 ~~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~--------~~~------~g~l~~~~-~---~~~~~g~--- 183 (464)
++..+++|+|.+.+.++..+|+++|++|. +||... +.. |..++..+ + +++.+|.
T Consensus 93 de~~~~qSer~~~~~~~a~~Li~~G~AY~-----c~ct~eel~~~r~~~~~~g~~~~~R~~s~ee~~~~fe~m~~G~~~~ 167 (553)
T 1qtq_A 93 SGNVRYSSDYFDQLHAYAIELINKGLAYV-----DELTPEQIREYRGTLTQPGKNSPYRDRSVEENLALFEKMRAGGFEE 167 (553)
T ss_dssp SSSCEEGGGGHHHHHHHHHHHHHTTSEEE-----ECCCHHHHHHHHCCSSSCCCCCTTTTCCHHHHHHHHHHHHTTCSCT
T ss_pred CCCCeehcccHHHHHHHHHHHHHCCCcee-----cCCCHHHHHHHhcccccCCCCCccccCchhhhHhHHHHHhCCCccC
Confidence 78889999999999999999999999994 555431 111 22222211 1 2334443
Q ss_pred -----C--cccCCcccCcccccccccccCCCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCccccchHHHH
Q 012397 184 -----R--VAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIA 256 (464)
Q Consensus 184 -----~--~~~~~~k~~~~d~~~w~~~~~g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h~~~~~a 256 (464)
+ ++....+.+..||++|+....+.+.|..+| .+.|+|+.++... .+.. .++-.+.|.| |+.+.++
T Consensus 168 g~~~lR~kid~~~~~~~~~D~Vl~R~~~~~h~~~~d~w-~g~PtY~la~vvD-Dh~~--GITHviRg~e----~~~n~~~ 239 (553)
T 1qtq_A 168 GKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKW-CIYPMYDFTHCIS-DALE--GITHSLCTLE----FQDNRRL 239 (553)
T ss_dssp TSCEEEECSCTTCSSGGGSSCEEEEECCCCBTTTBTSC-SEEECHHHHHHHH-HHHT--TCSEEEEEGG----GTTTHHH
T ss_pred CceEEEEecccccCCCCCCCcEEEEecCCCCCccCCCC-ccccccccccEEE-eccC--CcceEeeccc----hhhhHHH
Confidence 1 122233456679999997767776666667 5689999876321 1122 2455555666 7777787
Q ss_pred HH---hhccCCCCccEEEEeeeeeeCCcccccccCC---------------ccCHHHHHHh-cCchhHHHHHhhcCCCCc
Q 012397 257 QS---CAACQDSNVSYWMHNGHVTNNNEKMSKSLGN---------------FFTIRQITER-YHPLALRHFLISAHYRSP 317 (464)
Q Consensus 257 ~~---~a~~~~~~~~~~~~~~~v~~~G~KmSks~gn---------------~i~~~dll~~-~~~dalR~~ll~~~~~~~ 317 (464)
+. .+++...+++.| |++++.++|+|||||+|| ++++.++.+. |.|+|||.|+++..+...
T Consensus 240 q~~l~~alg~~~~P~~~-~f~hLn~~g~KLSKR~~~~~v~~g~v~gWDDPr~~Ti~~lr~rGy~PeAirnfl~~lG~s~~ 318 (553)
T 1qtq_A 240 YDWVLDNITIPVHPRQY-EFSRLNLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQ 318 (553)
T ss_dssp HHHHHHTSCCSCCCEEE-EECCCCBTTSCCCHHHHHHHHHTTSSSCTTCTTSCBHHHHHHHTCCHHHHHHHHHHHCCCSS
T ss_pred HHHHHHHcCCCCCCCeE-EEEeecCCCccccccccccccccCcccCCCCcchhhHHHHHHCCCCHHHHHHHHHHcCCCCC
Confidence 76 566544345554 678999999999999987 7789999976 999999999998866544
Q ss_pred c-CCCHHHHHHHHH
Q 012397 318 L-NYSVLQLDSASD 330 (464)
Q Consensus 318 ~-~f~~~~~~~~~~ 330 (464)
. .+++..+.+..+
T Consensus 319 ~~~~e~~~le~~~~ 332 (553)
T 1qtq_A 319 DNTIEMASLESCIR 332 (553)
T ss_dssp CCCBCHHHHHHHHH
T ss_pred ccccchhhHHHHHH
Confidence 3 368877776544
No 26
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.93 E-value=4.4e-27 Score=242.03 Aligned_cols=256 Identities=21% Similarity=0.201 Sum_probs=174.3
Q ss_pred CcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 012397 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDM 117 (464)
Q Consensus 38 ~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l 117 (464)
+++..=+ +|+|||.|||||||++++.+.+|| ++.+.++..+||.+.+ ++ ...|.+.|.+++
T Consensus 95 g~v~tRF-aPsPtG~LHIGhaRtal~n~l~Ar-----~~~G~~iLRieDtD~~---R~----------~~e~~~~I~edL 155 (553)
T 3aii_A 95 GEVVLRF-APNPSGPLHIGHARAAILNHEYAR-----KYDGRLILRIEDTDPR---RV----------DPEAYDMIPADL 155 (553)
T ss_dssp SCCEEEE-CCCSSSSCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCCGG---GC----------CTTHHHHHHHHH
T ss_pred CceEEEe-CCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEEECcCCcc---cc----------cHHHHHHHHHHH
Confidence 4443333 599999999999999988777666 4566777777777653 11 335889999999
Q ss_pred HhcCCCCCCCCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCC----------CCCCCCCCCcc-c---cccccCC
Q 012397 118 ADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK----------SPNYGRLSGQR-L---ENNRAGE 183 (464)
Q Consensus 118 ~~lgi~~~~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~----------~~~~g~l~~~~-~---~~~~~g~ 183 (464)
++||+.+ +..+++|+|.+.+.+++.+|+++|++|. ++|... -..|..++..+ + +++..|.
T Consensus 156 ~wLGl~w-d~~~~qSdr~~~y~~~~~~Li~~G~AY~-----c~cs~eei~~~r~~g~~~~cR~~s~ee~l~~f~~m~~G~ 229 (553)
T 3aii_A 156 EWLGVEW-DETVIQSDRMETYYEYTEKLIERGGAYV-----CTCRPEEFRELKNRGEACHCRSLGFRENLQRWREMFEMK 229 (553)
T ss_dssp HHHTCCC-SEEEEGGGGHHHHHHHHHHHHHTTSEEE-----ECSCHHHHHHHHHTTCCCGGGGCCHHHHHHHHHHGGGSC
T ss_pred HHcCCCC-CCCcccccCHHHHHHHHHHHHHcCCcee-----CCCCHHHHHHHhhcCCCCccccCCHHHHHHHHHHHhcCC
Confidence 9999997 6789999999999999999999999994 555432 11243343321 1 1344443
Q ss_pred ------CcccC--CcccCcccccccccccCCCCcccCCCCC---CCCchhhHHHHHHHhhcCCCeeEEEecccCccccch
Q 012397 184 ------RVAVD--SRKRNPADFALWKAAKAGEPSWDSPWGP---GRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHE 252 (464)
Q Consensus 184 ------~~~~~--~~k~~~~d~~~w~~~~~g~~~~~~~wg~---~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h~~ 252 (464)
++..+ ....++.||++|+....+.+. ||. ++|+|+.+|... .+..| ++..+-|.| |+.
T Consensus 230 ~g~~~lR~k~d~~~~n~~~~Dfvl~R~~~~~hp~----~Gd~~~g~PtYhfa~~vD-D~~~G--IThviRG~D----~~~ 298 (553)
T 3aii_A 230 EGSAVVRVKTDLNHPNPAIRDWVSMRIVEAEHPR----TGTRYRVYPMMNFSVAVD-DHLLG--VTHVLRGKD----HLA 298 (553)
T ss_dssp TTSCEEEECCCTTCSSGGGTTCEEEEECCSCBTT----TBTSCCEEECHHHHHHHH-HHHTT--CCEEEC---------C
T ss_pred cCceEEEEEcccccCCCCCCCcEEEEecCCCCCc----cCCCceeeeeeeeeeeee-eccCC--CceEeccHh----hhh
Confidence 11112 223356799999875555543 777 489999998543 33343 556666788 666
Q ss_pred HHHHHH---hhccCCCCccEEEEeeeeeeCCcccccccCC---------------ccCHHHHHHh-cCchhHHHHHhhcC
Q 012397 253 NEIAQS---CAACQDSNVSYWMHNGHVTNNNEKMSKSLGN---------------FFTIRQITER-YHPLALRHFLISAH 313 (464)
Q Consensus 253 ~~~a~~---~a~~~~~~~~~~~~~~~v~~~G~KmSks~gn---------------~i~~~dll~~-~~~dalR~~ll~~~ 313 (464)
+.+++. .+++ .+++++ .|+++++++|+|||||+|| ..++.++.+. |.|++||.|+++..
T Consensus 299 nt~~Q~~l~~alG-~~~P~y-~H~~~L~~~g~KLSKR~~~~~v~~g~v~gWdDpr~~Ti~~lr~rG~~PeaIr~fl~~~G 376 (553)
T 3aii_A 299 NREKQEYLYRHLG-WEPPEF-IHYGRLKMDDVALSTSGAREGILRGEYSGWDDPRLGTLRAIARRGIRPEAIRKLMVEIG 376 (553)
T ss_dssp HHHHHHHHHHHHT-CCCCEE-ECCCCBC-------CHHHHHHHHHSSCCSTTCTTSCBHHHHHHTTCCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHcC-CCCCeE-EEeeEEecCCceechhhhhhhccccccccccCcchHHHHHHHHcCCCHHHHHHHHHhcC
Confidence 766665 3444 345555 5999999999999999997 7789999986 99999999999887
Q ss_pred C-CCccCCCHHHHHHHHHH
Q 012397 314 Y-RSPLNYSVLQLDSASDA 331 (464)
Q Consensus 314 ~-~~~~~f~~~~~~~~~~~ 331 (464)
+ .++.+|+++.+.++.+.
T Consensus 377 ~s~~~~~~s~~~L~~~~r~ 395 (553)
T 3aii_A 377 VKIADSTMSWKKIYGLNRS 395 (553)
T ss_dssp TCSSCBCCCHHHHHHHHHH
T ss_pred CCCccccccHHHHHHHHHH
Confidence 7 68999999999877654
No 27
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=99.92 E-value=3.9e-25 Score=236.71 Aligned_cols=261 Identities=17% Similarity=0.113 Sum_probs=186.2
Q ss_pred CcceEEEe--CCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHH
Q 012397 38 GKVGMYVC--GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLV 115 (464)
Q Consensus 38 ~~~~v~~~--~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~ 115 (464)
+++.-++| +|+|||.|||||||++++...+|| ++.+.|+..+||.+.+ | -...|.+.|.+
T Consensus 62 g~~~~v~tRFaPSPtG~LHIGhARtAL~n~l~Ar-----~~gG~fiLRIEDTD~~---R----------~~~e~~~~Ile 123 (851)
T 2hz7_A 62 GKYPRVVTRFPPDPSGYAHLGHVFASLLDFNTAR-----QYGGQFNLRMDDTNPE---L----------ARQEYVDSIAD 123 (851)
T ss_dssp TSCSSCEEEECCCSSSCCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCCTT---T----------CCHHHHHHHHH
T ss_pred CCcCceEEEeCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEEECcCCcc---c----------ccHHHHHHHHH
Confidence 44444556 899999999999999998877777 3455666666666642 1 14578999999
Q ss_pred HHHhcCCCCCCCCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCC--------CC------CCCCCCCcc-c---c
Q 012397 116 DMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK--------SP------NYGRLSGQR-L---E 177 (464)
Q Consensus 116 ~l~~lgi~~~~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~--------~~------~~g~l~~~~-~---~ 177 (464)
+|++||+.+++..+++|+|.+.+.+++.+|+++|++|. |||... +. .|..++..+ + +
T Consensus 124 dL~wLGl~wde~~~~qSer~d~y~e~a~~LI~~G~AY~-----c~ct~eel~~~r~~~~~~G~~s~~R~ls~ee~l~~fe 198 (851)
T 2hz7_A 124 DLKWLGLDWGEHFYYASDYFDRYYAYAEQLIRQGDAYV-----ESVSPEELSRLRGNATTPGTPSPYRDRSVEENLDLLR 198 (851)
T ss_dssp HHHHHTCCCTTCEEEGGGGHHHHHHHHHHHHHTTSEEE-----ECSCHHHHHHHHCBTTBCCCCCTTTTCCHHHHHHHHH
T ss_pred HHHHcCCCCCCCcccHhhhHHHHHHHHHHHHHCCCcEe-----ecCCHHHHHHHhcchhccCCCcccccCCHHHHhhHHH
Confidence 99999999878889999999999999999999999994 555431 11 133333321 1 2
Q ss_pred ccccCC--------C--cccCCcccCcccccccccccCCCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCc
Q 012397 178 NNRAGE--------R--VAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLI 247 (464)
Q Consensus 178 ~~~~g~--------~--~~~~~~k~~~~d~~~w~~~~~g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~ 247 (464)
++.+|. | ++....+.+..||++|+....+.+.|..+| .+.|+||++|... .+..| ++..+-|.|
T Consensus 199 ~m~~G~~~~g~~vlR~Kid~~~~~~~~~DfVl~R~~~~~h~~~gd~w-~g~PtYhfA~vVD-D~~~G--ITHViRG~D-- 272 (851)
T 2hz7_A 199 RMKAGEFADGEHVLRAKIDLTAPNMKLRDPVLYRIVNKPHFRTSDEW-HIYPAYDFEHPLQ-DAIEG--VTHSMCSLE-- 272 (851)
T ss_dssp HHHTTCSCTTSCEEEECCCTTCSSGGGSSCEEEEECCCCBTTTBTSC-SEEECHHHHHHHH-HHHHT--CSEEEEEGG--
T ss_pred HHhcCCcccCCeeEEEeccccccCCCCCCcEEEEecCCCCCccCCCC-ccccccceeeEee-eccCC--cceeecchh--
Confidence 344454 2 222233456679999998777777777788 5689999998643 33343 555566778
Q ss_pred cccchHHHHHH---hhccCCCCccEEEEeeeeeeCCcccccccCC---------------ccCHHHHHHh-cCchhHHHH
Q 012397 248 FPHHENEIAQS---CAACQDSNVSYWMHNGHVTNNNEKMSKSLGN---------------FFTIRQITER-YHPLALRHF 308 (464)
Q Consensus 248 ~~h~~~~~a~~---~a~~~~~~~~~~~~~~~v~~~G~KmSks~gn---------------~i~~~dll~~-~~~dalR~~ 308 (464)
|+.+.+.+. .+++....++.| |++++.++|+|||||+|| .+++.++.+. |.|++||.|
T Consensus 273 --~~~n~~~q~~l~~alG~~~~P~~~-~fahLn~~g~KLSKR~g~~~v~~g~v~gwDDPr~~TI~~lr~rGy~PeAIr~f 349 (851)
T 2hz7_A 273 --FVDNRAIYDWLMEKLNFDPRPHQY-EFGRRGLEYTITSKRKLRELVQAGRVSGWDDPRMPTLRAQRRLGVTPEAVRAF 349 (851)
T ss_dssp --GTTTHHHHHHHHHHTTCSSCCEEE-EECCEEETTCCCCHHHHHHHHHTTSSSSTTCTTSSBHHHHHHHTCCHHHHHHH
T ss_pred --hhhChHHHHHHHHHcCCCCCCCce-EEEEecCCCccccccccccccccCcccCCCCcchhHHHHHHHcCCCHHHHHHH
Confidence 666666554 566544324443 678999999999999987 6789999976 999999999
Q ss_pred HhhcCCCC-ccCCCHHHHHHHHH
Q 012397 309 LISAHYRS-PLNYSVLQLDSASD 330 (464)
Q Consensus 309 ll~~~~~~-~~~f~~~~~~~~~~ 330 (464)
+++..+.. +..+++..+.....
T Consensus 350 l~~lG~s~~~~~~e~~~le~~~r 372 (851)
T 2hz7_A 350 AAQIGVSRTNRTVDIAVYENAVR 372 (851)
T ss_dssp HHHSCCCSSCEEECHHHHHHHHH
T ss_pred HHhcCCCCCcccccHHHHHHHHH
Confidence 99886653 44467777764433
No 28
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=99.89 E-value=2.3e-22 Score=207.12 Aligned_cols=241 Identities=18% Similarity=0.178 Sum_probs=165.5
Q ss_pred CCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 012397 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (464)
Q Consensus 46 ~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~~ 125 (464)
+|+|||.|||||+|+++....+|| ++.+.|+..++|.+. .| -...+.+.|.++|++||+.++
T Consensus 7 APSPtG~lHiG~artal~n~l~Ar-----~~~G~filRieDtD~---~R----------~~~~~~~~i~~dL~wLGl~wd 68 (492)
T 2cfo_A 7 APSPTGNLHIGTARTAVFNWLYAR-----HRGGKFILRIEDTDR---ER----------SRPEYTENILEGLQWLGLTWD 68 (492)
T ss_dssp CCCTTSCCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCSS---SS----------CCHHHHHHHHHHHHHTTCCCS
T ss_pred CCCCCCCccHHHHHHHHHHHHHHH-----hcCCeEEEEEeeCCc---cc----------cchHHHHHHHHHHHHcCCCCC
Confidence 589999999999999988777776 344555555555542 11 125688999999999999975
Q ss_pred CCCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCC-----------------CCC-CCCCCCCccc-cccccCC---
Q 012397 126 TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVE-----------------KSP-NYGRLSGQRL-ENNRAGE--- 183 (464)
Q Consensus 126 ~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~-----------------~~~-~~g~l~~~~~-~~~~~g~--- 183 (464)
+..+++|++.+.+++++++|+++|++|. |||.. ..+ .|+.++..+. +.+.+|.
T Consensus 69 e~~~~QS~r~~~y~~~~~~Li~~G~AY~-----c~ct~~el~~~r~~~~~~g~~~~y~~~cr~ls~~e~~~~~~~g~~~~ 143 (492)
T 2cfo_A 69 EGPYFQSDRLDLYRQAIQTLLDKGLAYY-----CYCTPEELEALRAEQKAKGQAPRYDNRHRHLTPEEQAAFEAAGRTPV 143 (492)
T ss_dssp EEEEEGGGCHHHHHHHHHHHHHTTSEEE-----ECCCHHHHHHHHHHHHHHTCCSSCCCTTTTCCHHHHHHHHHTTCCCE
T ss_pred CCCccccCCHHHHHHHHHHHHHCCCceE-----ecCCHHHHHHHHHHHHhcCCCCCCCcccccCCHHHHHHHHhCCCCce
Confidence 5688999999999999999999999994 66644 122 2665554322 1122332
Q ss_pred -CcccCC----------------cccCc-ccccccccccCCCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEeccc
Q 012397 184 -RVAVDS----------------RKRNP-ADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGID 245 (464)
Q Consensus 184 -~~~~~~----------------~k~~~-~d~~~w~~~~~g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D 245 (464)
|+..+. ...+. .||++||... .+ |.|.|+|+.+|... .... .++-.+-|.|
T Consensus 144 iR~k~~~~~~~~~~D~v~G~~~~~~~~~~~D~Vl~R~d~-------~p-~~G~PtY~la~vvD-D~~~--gIthviRG~D 212 (492)
T 2cfo_A 144 IRFKIEDDRQIEWQDLVRGRVSWQGADLGGDMVIARAAP-------RG-EIGYPLYNLVVVVD-DIAM--GITDVIRGED 212 (492)
T ss_dssp EEECCCTTCEEEEEETTTEEEEEEGGGGCSSEEEECSCC-------TT-SCCCBCHHHHHHHH-HHHT--TCSEEEEEGG
T ss_pred EEEEcCCCCceEEEecceeeeeecccccCCCeEEEEecC-------CC-CCCceeehhhhhhh-hhcC--CCCeEEEchh
Confidence 111110 12344 6899998632 23 46899999988532 1223 3666777889
Q ss_pred CccccchHHHHHH---hhccCCCCccEEEEeeeee-eCCcccccccCCccCHHHHHHh-cCchhHHHHHhhcCCC----C
Q 012397 246 LIFPHHENEIAQS---CAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITER-YHPLALRHFLISAHYR----S 316 (464)
Q Consensus 246 ~~~~h~~~~~a~~---~a~~~~~~~~~~~~~~~v~-~~G~KmSks~gn~i~~~dll~~-~~~dalR~~ll~~~~~----~ 316 (464)
|+.+.+.+. .+++.++| .|.|.++++ .+|+|||||+||+ ++.++.+. |.|+++|.|++...+. .
T Consensus 213 ----~~~~t~~q~~l~~alg~~~P--~~~H~plil~~~g~KLSKr~g~~-~l~~~r~~G~~peal~~~l~~lG~s~~~~~ 285 (492)
T 2cfo_A 213 ----HIGNTPKQILLYEALGATPP--NFAHTPLILNSTGQKLSKRDGVT-SISDFRAMGYLAPALANYMTLLGWSPPEGV 285 (492)
T ss_dssp ----GTTHHHHHHHHHHHTTCCCC--EEEEECCEECSSSSBCCTTSSCC-BHHHHHHTTCCHHHHHHHHHHTTBCCCTTT
T ss_pred ----hhhCHHHHHHHHHHcCCCCc--eEEEeeeEECCCCCEecccCCcc-cHHHHHHCCCCHHHHHHHHHHhCCCCCCcc
Confidence 666666555 45554433 568888865 4999999999995 89999974 9999999999885332 2
Q ss_pred ccCCCHHHHHH
Q 012397 317 PLNYSVLQLDS 327 (464)
Q Consensus 317 ~~~f~~~~~~~ 327 (464)
.--|+.+.+.+
T Consensus 286 ~e~~~~~e~i~ 296 (492)
T 2cfo_A 286 GELFTLDLAAK 296 (492)
T ss_dssp CSCCCHHHHHH
T ss_pred ccccCHHHHHh
Confidence 34577766653
No 29
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=99.87 E-value=2e-22 Score=195.11 Aligned_cols=207 Identities=14% Similarity=0.134 Sum_probs=125.1
Q ss_pred CCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 012397 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (464)
Q Consensus 46 ~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~~ 125 (464)
+|+|||+|||||+|+++.....|| ++.+.++..++|.+.+ ++ ...+.+.|.++|++|||.++
T Consensus 11 APsPtG~LHiG~~rtal~n~l~Ar-----~~~g~~ilRieDtD~~---R~----------~~~~~~~I~~dL~~LGl~~D 72 (298)
T 1nzj_A 11 APSPSGELHFGSLIAALGSYLQAR-----ARQGRWLVRIEDIDPP---RE----------VPGAAETILRQLEHYGLHWD 72 (298)
T ss_dssp CCCTTSCCCHHHHHHHHHHHHHHH-----HTTCEEEEEECCSCGG---GS----------CTTHHHHHHHHHHHTTCCCS
T ss_pred CcCCCCCccHHHHHHHHHHHHHHH-----hcCCeEEEEEecCCch---hh----------HHHHHHHHHHHHHHcCCCCC
Confidence 589999999999999986666555 4456666666666643 11 14588999999999999976
Q ss_pred CCCCCcchhHHHHHHHHHHHHHCCceEee---------cCcEEEcCCCC-CCCCCCC---------CccccccccCCCcc
Q 012397 126 TYQPRVSDHMEQIKDMITQIINNDCAYVV---------EGDVFFAVEKS-PNYGRLS---------GQRLENNRAGERVA 186 (464)
Q Consensus 126 ~~~~r~s~~~~~~~~~~~~L~~~G~~y~~---------~~~~~~~~~~~-~~~g~l~---------~~~~~~~~~g~~~~ 186 (464)
+..+++|++.+.+++++++|+++|++|.. .+.+|.+.... +.+|... .....++..|. +.
T Consensus 73 ~~~~~qSer~~~y~~~~~~L~~~G~aY~c~ct~~~l~~~~~~Y~g~cr~~~~~g~~~~~R~r~~~~~~~f~D~~~G~-~~ 151 (298)
T 1nzj_A 73 GDVLWQSQRHDAYREALAWLHEQGLSYYCTCTRARIQSIGGIYDGHCRVLHHGPDNAAVRIRQQHPVTQFTDQLRGI-IH 151 (298)
T ss_dssp SCCEEGGGCHHHHHHHHHHHHHTTCEEEECCCHHHHHHTTSSCCCTTTTTCCCSTTCEEEECCSSCCCEEEETTTEE-EE
T ss_pred CCCeeeeCCHHHHHHHHHHHHHcCCcccCcCCHHHHHHcCCCCCCccccCCcCCCCCcEEEecCCcccceehhhCcc-cc
Confidence 66889999999999999999999999963 12222221110 1122211 00111222221 11
Q ss_pred cCCcccCcccccccccccCCCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCccccchHHHHHHh---hccC
Q 012397 187 VDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSC---AACQ 263 (464)
Q Consensus 187 ~~~~k~~~~d~~~w~~~~~g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h~~~~~a~~~---a~~~ 263 (464)
.. .+.+..||++||. .+.|+|+++|.. -....|.+.+|+ |.| |..+.+.+.. +++.
T Consensus 152 ~~-~~~~~~D~VL~R~-------------dG~PtY~la~vv-dD~~~giThvIr--G~D----~l~~t~~q~~l~~alG~ 210 (298)
T 1nzj_A 152 AD-EKLAREDFIIHRR-------------DGLFAYNLAVVV-DDHFQGVTEIVR--GAD----LIEPTVRQISLYQLFGW 210 (298)
T ss_dssp CC-HHHHHSCCEEECT-------------TSCBCHHHHHHH-HHHHTTCCEEEE--EGG----GHHHHHHHHHHHHHHTC
T ss_pred cC-cccCCCCEEEECC-------------CCCEeeeeeeee-EHHhcCCCEEEe--Ccc----ccccHHHHHHHHHHcCC
Confidence 11 1124468888875 478999999865 355677677777 889 6666666654 3343
Q ss_pred CCCccEEEEeeee-eeCCcccccccCCccCHHH
Q 012397 264 DSNVSYWMHNGHV-TNNNEKMSKSLGNFFTIRQ 295 (464)
Q Consensus 264 ~~~~~~~~~~~~v-~~~G~KmSks~gn~i~~~d 295 (464)
+++.+ .|.+++ ..+|+|||||+||+ ++++
T Consensus 211 -~~p~~-~H~pll~~~~g~KLSKR~g~~-~v~~ 240 (298)
T 1nzj_A 211 -KVPDY-IHLPLALNPQGAKLSKQNHAP-ALPK 240 (298)
T ss_dssp -CCCEE-EEECBCCC--------------CCCS
T ss_pred -CCCeE-EEeeeeECCCCCcccccCCcc-Chhc
Confidence 44554 788887 45999999999996 4443
No 30
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=99.83 E-value=1.1e-19 Score=186.95 Aligned_cols=229 Identities=18% Similarity=0.213 Sum_probs=147.2
Q ss_pred CcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 012397 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDM 117 (464)
Q Consensus 38 ~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l 117 (464)
-.+.+.-.+|+|||+|||||+|+++++|.+||. ..|.-++.+..+| . ....+.+.+.+.++|
T Consensus 11 ~~vv~~RfaPsPTG~LHiG~aRtAl~n~~~Ar~--~~G~~iLRieDtD---~-------------~r~~~~~~~~I~~~l 72 (481)
T 2o5r_A 11 HHMVRVRFAPSPTGFLHVGGARTALFNFLFARK--EKGKFILRIEDTD---L-------------ERSEREYEEKLMESL 72 (481)
T ss_dssp --CCEEEECCCCCSCCBHHHHHHHHHHHHHHHH--HTCEEEECBCCSS---C-------------CSGGGHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCCcCHHHHHHHHHHHHHHHH--cCCeEEEEEecCC---c-------------cccHHHHHHHHHHHH
Confidence 356677788999999999999999999999996 7887777766554 1 222345778889999
Q ss_pred HhcCCCCCCC--------CCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCCC--------------CC------CC
Q 012397 118 ADLQCLPPTY--------QPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS--------------PN------YG 169 (464)
Q Consensus 118 ~~lgi~~~~~--------~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~--------------~~------~g 169 (464)
++||+.++.. ..++|++.+.++++.++|+++|.+| .+||..+. +. |.
T Consensus 73 ~wlGl~~de~p~~gg~~g~y~QS~r~~~y~~~a~~L~~~G~aY-----~c~ct~eel~~~r~~~~~~g~~~~yd~~~s~r 147 (481)
T 2o5r_A 73 RWLGLLWDEGPDVGGDHGPYRQSERVEIYREHAERLVKEGKAY-----YVYAYPEEIEEMREKLLSEGKAPHYSQEMFEK 147 (481)
T ss_dssp HHHTCCCSBBTTTBCTTCCCBGGGGHHHHHHHHHHHHHTTSEE-----EECCCSTTTHHHHHHHHHTTCCCCBCGGGGTT
T ss_pred HHcCCCCCCCcccCCCCCceeeeccHHHHHHHHHHHHHCCCee-----EecCCHHHHHHHHHHHHhcCCCCCCCCchhhh
Confidence 9999986332 2578899999999999999999999 34444320 00 22
Q ss_pred CCCCcccc-ccccCCC----cccCC---------------cccCcccccccccccCCCCcccCCCCCCCCchhhHHHHHH
Q 012397 170 RLSGQRLE-NNRAGER----VAVDS---------------RKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMS 229 (464)
Q Consensus 170 ~l~~~~~~-~~~~g~~----~~~~~---------------~k~~~~d~~~w~~~~~g~~~~~~~wg~~~P~w~~~~~~~~ 229 (464)
.++..+.. .+.+|.. +..+. ......|+.++| .++.|+|+.++.. -
T Consensus 148 ~l~~~e~~~~~~~G~~~~iR~k~~~~~~~~~D~~~G~~~~~~~~~~D~Vl~R-------------sDG~ptY~~a~vv-D 213 (481)
T 2o5r_A 148 FDTPERRREYEEKGLRPAVFFKMPRKDYVLNDVVKGEVVFKTGAIGDFVIMR-------------SNGLPTYNFACVV-D 213 (481)
T ss_dssp TCCHHHHHHHHHTTCCCEEEECCCSSCEEEEETTTEEEEECTTSSCBEEEEC-------------TTSCBCHHHHHHH-H
T ss_pred cCCHHHHHHHHhcCCcceEEEEcCCCceEEEecccceeEeccccCCCeEEEc-------------cCCCcchhhHHHH-H
Confidence 22211100 0111210 00000 000112333333 3578899877642 2
Q ss_pred HhhcCCCeeEEEecccCccccchHH---HHHHhhccCCCCccEEEEeeeeee-CCcccccccCCccCHHHHHHh-cCchh
Q 012397 230 AHYLSSKFDIHGGGIDLIFPHHENE---IAQSCAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITER-YHPLA 304 (464)
Q Consensus 230 ~~~~~~~~~i~~~G~D~~~~h~~~~---~a~~~a~~~~~~~~~~~~~~~v~~-~G~KmSks~gn~i~~~dll~~-~~~da 304 (464)
....+ ++-.+.|.| |+.+. ..+..+++.++| . +.|.++++. +|+|||||+|++ +++++++. |.|++
T Consensus 214 D~~~g--ithvirG~D----~~~~t~~q~~l~~aLG~~~p-~-~~H~plil~~~G~KLSKR~g~~-~l~~~~~~G~~pea 284 (481)
T 2o5r_A 214 DMLME--ITHVIRGDD----HLSNTLRQLALYEAFEKAPP-V-FAHVSTILGPDGKKLSKRHGAT-SVEAFRDMGYLPEA 284 (481)
T ss_dssp HHHTT--CSEEEEEGG----GHHHHHHHHHHHHHTTCCCC-E-EEEECCEECTTSSBCCGGGSCC-BHHHHHHHTCCHHH
T ss_pred HHhCC--CCeEEEChh----HHHhHHHHHHHHHHcCCCCC-e-EEEEeeEECCCCCcccCcCCcc-cHHHHHHCCCCHHH
Confidence 23344 455568889 55443 344456665544 3 688887554 899999999997 89999984 77778
Q ss_pred HHHHHhhc
Q 012397 305 LRHFLISA 312 (464)
Q Consensus 305 lR~~ll~~ 312 (464)
++.|++..
T Consensus 285 l~~~l~~l 292 (481)
T 2o5r_A 285 LVNYLALL 292 (481)
T ss_dssp HHHHHHTS
T ss_pred HHHHHHHh
Confidence 77777654
No 31
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=99.78 E-value=8.7e-18 Score=171.70 Aligned_cols=248 Identities=19% Similarity=0.162 Sum_probs=151.3
Q ss_pred CCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 012397 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (464)
Q Consensus 46 ~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~~ 125 (464)
.|+|||.+||||+|+++..+.+|| ...|.-++.+..+| . . .....|.+.|.++|++|||.++
T Consensus 31 APSPTG~lHiG~~rtal~n~l~Ar--~~~G~filRieDtD---~---~----------R~~~~~~~~i~~dl~wlGl~~d 92 (490)
T 4g6z_A 31 APSPTGFIHLGNIRSALYPWAFAR--KMKGTFVLRIEDTD---V---E----------RSSQEAVDAILEGMAWLGLDYD 92 (490)
T ss_dssp CCCCCSCCBHHHHHHHHHHHHHHH--HTTCEEEEEECCCC---G---G----------GCCHHHHHHHHHHHHHTTCCCS
T ss_pred CCCCCCCccHHHHHHHHHHHHHHH--hcCCeEEEEeCCCC---c---c----------cccHHHHHHHHHHHHHcCCCCC
Confidence 488999999999999999999888 34565555555444 2 1 1135688999999999999975
Q ss_pred CCCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCCC------------------CCCCCCCCccccccccCCCccc
Q 012397 126 TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS------------------PNYGRLSGQRLENNRAGERVAV 187 (464)
Q Consensus 126 ~~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~------------------~~~g~l~~~~~~~~~~g~~~~~ 187 (464)
+...++|++.+.+++++.+|+++|++| .|||..+. ..|..++........+|....+
T Consensus 93 ~~~~~qS~r~~~y~~~~~~Li~~G~aY-----~C~ct~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~~~~~~~g~~~~~ 167 (490)
T 4g6z_A 93 EGPYYQMQRMDRYREVLAQMQEKGLVY-----PCYMSTEELDALRERQRAAGEKPRYDGTWRPEPGKVLPEPPAGVAPVL 167 (490)
T ss_dssp EEEEEGGGCHHHHHHHHHHHHHTTSEE-----EECC-------------------CCCCTTCCCTTCCCCCCCTTCCCEE
T ss_pred CCCcccccCHHHHHHHHHHHHHCCCEE-----eCCCCHHHHHHHHHHHHhcCCCCCCCcccccCChhhhhhhhcCCCceE
Confidence 556789999999999999999999999 55554320 1122232211111111111000
Q ss_pred CCcccCccc-ccccccccCCCC--------cccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCccccchHHHHHH
Q 012397 188 DSRKRNPAD-FALWKAAKAGEP--------SWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQS 258 (464)
Q Consensus 188 ~~~k~~~~d-~~~w~~~~~g~~--------~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h~~~~~a~~ 258 (464)
. .+ .|.+ -..|...-.|.. .+.....++.|+|+.++... ....| ++-.+-|.| |..+.+.+.
T Consensus 168 R-~k-~~~~~~~~~~D~i~G~~~~~~~~~~D~Vl~R~DG~ptY~lA~vVD-D~~mg--IThViRG~D----~l~~tprq~ 238 (490)
T 4g6z_A 168 R-FR-NPLTGTVAWDDAVKGRVEISNEELDDLVVARPDGTPMYNFCVVVD-DLDMG--ITHVIRGDD----HVNNTPRQI 238 (490)
T ss_dssp E-EC-CCCSSEEEEEETTTEEEEEEGGGCCCCEEECTTSCBCHHHHHHHH-HHHTT--CCEEEEEGG----GGGGHHHHH
T ss_pred E-Ee-cCCCCcEEEEEeeeeeeeeccccCCCeEEEeeCCCccchhHHHHH-HHhcC--CCEEEeccc----cccChHHHH
Confidence 0 00 0000 011111000100 00112245778888765321 22344 444455889 665555443
Q ss_pred ---hhccCCCCccEEEEeeeeee-CCcccccccCCccCHHHHHH-hcCchhHHHHHhhcC--CCCccCCCHHHHHHH
Q 012397 259 ---CAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITE-RYHPLALRHFLISAH--YRSPLNYSVLQLDSA 328 (464)
Q Consensus 259 ---~a~~~~~~~~~~~~~~~v~~-~G~KmSks~gn~i~~~dll~-~~~~dalR~~ll~~~--~~~~~~f~~~~~~~~ 328 (464)
.+++.++| .+.|...++. +|+|||||.|. +++.++.+ .|.|++++-|++... ....--|+.+++.+.
T Consensus 239 ~l~~aLG~~~P--~f~HlpLi~~~~g~KLSKR~g~-~sl~~~r~~G~~peal~n~l~~lG~s~~~~e~~s~~eli~~ 312 (490)
T 4g6z_A 239 NILRALGGEVP--VYAHLPTVLNEQGEKMSKRHGA-MSVMGYRDAGYLPEAVLNYLARLGWSHGDAEIFTREQFVEW 312 (490)
T ss_dssp HHHHHTTCCCC--EEEEECCEECTTSSBCCTTTTC-CBHHHHHHTTCCHHHHHHHHHTSSBCCTTCCCCCHHHHHHH
T ss_pred HHHHHcCCCCC--eEEEecceeCCCCCcccCCCCC-cCHHHHHHCCCCHHHHHHHHHHhCCCCCCccccCHHHHHhh
Confidence 45565544 3577777766 89999999997 78998886 499999999998753 333445788777643
No 32
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=99.78 E-value=2.2e-18 Score=176.37 Aligned_cols=236 Identities=16% Similarity=0.174 Sum_probs=152.7
Q ss_pred CCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 012397 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (464)
Q Consensus 46 ~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~~ 125 (464)
+|+|||.|||||+|+++....+|| ...|. |+.-++|.+.+ | ....+.+.|.++|++||+.++
T Consensus 7 aPsPtG~LHiG~~rtal~n~l~Ar--~~~G~---filRieDtD~~---R----------~~~~~~~~I~~dl~wlGl~wd 68 (468)
T 1j09_A 7 APSPTGDPHVGTAYIALFNYAWAR--RNGGR---FIVRIEDTDRA---R----------YVPGAEERILAALKWLGLSYD 68 (468)
T ss_dssp CCCCSSSCBHHHHHHHHHHHHHHH--HTTCE---EEECBCCCCTT---S----------CCTTHHHHHHHHHHHTTCCCS
T ss_pred CCCCCCCccHHHHHHHHHHHHHHH--HcCCE---EEEEeCcCCCc---c----------cChHHHHHHHHHHHHcCCCCC
Confidence 588999999999999999999988 44554 55555555531 1 123478899999999999974
Q ss_pred CCC--------CCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCC------------CCCCCCCCCcccc-ccccCCC
Q 012397 126 TYQ--------PRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK------------SPNYGRLSGQRLE-NNRAGER 184 (464)
Q Consensus 126 ~~~--------~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~------------~~~~g~l~~~~~~-~~~~g~~ 184 (464)
... .++|++.+.+++...+|+++|++| .|||... ...|..++..+.. .+.+|..
T Consensus 69 ~~~~~gG~~gp~~QS~r~~~y~~~~~~L~~~G~aY-----~c~ct~~el~~~r~~~~~y~~~cr~l~~~e~~~~~~~g~~ 143 (468)
T 1j09_A 69 EGPDVGGPHGPYRQSERLPLYQKYAEELLKRGWAY-----RAFETPEELEQIRKEKGGYDGRARNIPPEEAEERARRGEP 143 (468)
T ss_dssp BBTTTBCTTCCCBGGGCHHHHHHHHHHHHHHTSEE-----EECCCHHHHHHHHHHHSSCCCGGGGSCHHHHHHHHHTTCC
T ss_pred CCCCCCCCCCCeeccCCHHHHHHHHHHHHHcCCeE-----EcCCCHHHHHHHHHHcCCCCCcccCCCHHHHHHHHhcCCC
Confidence 433 689999999999999999999999 4454321 1124334332211 1112221
Q ss_pred ----cccCC----------------cccCcccccccccccCCCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecc
Q 012397 185 ----VAVDS----------------RKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGI 244 (464)
Q Consensus 185 ----~~~~~----------------~k~~~~d~~~w~~~~~g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~ 244 (464)
+..+. ......|+.++|. ++.|+|+.++.. -....| ++-.+-|.
T Consensus 144 ~~~R~k~~~~~~~~~~D~~~G~~~~~~~~~~D~Vl~R~-------------dg~PtY~~a~vv-DD~~~g--ithvirG~ 207 (468)
T 1j09_A 144 HVIRLKVPRPGTTEVKDELRGVVVYDNQEIPDVVLLKS-------------DGYPTYHLANVV-DDHLMG--VTDVIRAE 207 (468)
T ss_dssp CEEEECCCSSCEEEEEETTTEEEEEEGGGSCCCEEECT-------------TSCBCHHHHHHH-HHHHTT--CCEEEEEG
T ss_pred ceEEEecCCCCceEEEeccceeEeecccCCCCeEEEec-------------CCCeeehhHHHH-HHHHCC--CCeEEECh
Confidence 00000 0011134444443 578899887642 233344 44445588
Q ss_pred cCccccchHHHHH---HhhccCCCCccEEEEeeeeee-CCcccccccCCccCHHHHHHh-cCchhHHHHHhhcCCC---C
Q 012397 245 DLIFPHHENEIAQ---SCAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITER-YHPLALRHFLISAHYR---S 316 (464)
Q Consensus 245 D~~~~h~~~~~a~---~~a~~~~~~~~~~~~~~~v~~-~G~KmSks~gn~i~~~dll~~-~~~dalR~~ll~~~~~---~ 316 (464)
| |+.+.+.+ ..+++.++| .+.|.++++. +|+|||||+|+. ++.++.+. |.|+++|.|++...+. .
T Consensus 208 D----~~~~t~~q~~l~~alg~~~p--~~~h~~li~~~~g~klSKR~g~~-~l~~~~~~G~~peal~~~l~~lG~~~~~~ 280 (468)
T 1j09_A 208 E----WLVSTPIHVLLYRAFGWEAP--RFYHMPLLRNPDKTKISKRKSHT-SLDWYKAEGFLPEALRNYLCLMGFSMPDG 280 (468)
T ss_dssp G----GGGGHHHHHHHHHHHTCCCC--EEEEECCCBCTTSCBCCTTTSCC-BHHHHHHTTCCHHHHHHHHHHHSCCCTTC
T ss_pred h----hhhhHHHHHHHHHHcCCCCC--eEEEeeeeeCCCCCccccccchh-hHHHHHHCCCCHHHHHHHHHHhccCCccc
Confidence 9 55554443 355665443 3477777654 899999999997 89999874 8999999999875332 2
Q ss_pred ccCCCHHHHHH
Q 012397 317 PLNYSVLQLDS 327 (464)
Q Consensus 317 ~~~f~~~~~~~ 327 (464)
...|+.+++.+
T Consensus 281 ~~~~~~~el~~ 291 (468)
T 1j09_A 281 REIFTLEEFIQ 291 (468)
T ss_dssp CSCCCHHHHHH
T ss_pred ccCCCHHHHHh
Confidence 24688777654
No 33
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=99.76 E-value=7.8e-18 Score=176.83 Aligned_cols=224 Identities=18% Similarity=0.176 Sum_probs=146.3
Q ss_pred CcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 012397 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDM 117 (464)
Q Consensus 38 ~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l 117 (464)
+++++=+. |+|||+|||||+|+++.++.+||. ..|.-++.+ +|.+. ..-...+.+.|.++|
T Consensus 128 ~~v~~RFa-PsPTG~LHiG~artAl~n~l~Ar~--~~G~~ilRi---eDtD~-------------~r~~~~~~~~I~~dL 188 (592)
T 3al0_C 128 ELVRVRFA-PSPTGHLHVGGARTALFNWMFARK--EGGKFILRI---EDTDT-------------ERSSREYEQQILESL 188 (592)
T ss_dssp CCCEEEEC-CCSSSCCBHHHHHHHHHHHHHHHH--HTCEEEECB---CCCCS-------------SSCCHHHHHHHHHHH
T ss_pred CeEEEEEC-CCCCCCccHHHHHHHHHHHHHHHh--cCCcEEEEe---cCcCh-------------hhccHHHHHHHHHHH
Confidence 45666666 999999999999999999999994 566655554 44331 122456888999999
Q ss_pred HhcCCCCCCC--------CCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCC------CCCCCCCCCccccccccCC
Q 012397 118 ADLQCLPPTY--------QPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK------SPNYGRLSGQRLENNRAGE 183 (464)
Q Consensus 118 ~~lgi~~~~~--------~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~------~~~~g~l~~~~~~~~~~g~ 183 (464)
++||+.++.. ..++|++.+.+++.+.+|+++|++| .|||... .+.|..- ...+.+|.
T Consensus 189 ~wlGl~~D~~~~~gG~~gp~~qSer~~~y~~~~~~L~~~G~aY-----~c~ct~~el~~~~~~~Y~~~----~~~~~~g~ 259 (592)
T 3al0_C 189 RWCGLDWDEGPDIGGDFGPYRQSERLEIYREYAEKLVEDKRAY-----YVVYDKEDPSKELFTTYEYP----HEYKEKGH 259 (592)
T ss_dssp HHTTCCCSBBTTTBCTTCCCBSTTCHHHHHHHHHHHHHTTTEE-----EEEEETTEEEEECCCCSSCC----HHHHHTTC
T ss_pred HHcCCCCCCCCCcCCCCCCeeeeCCHHHHHHHHHHHHHcCCce-----EecCCHHHHHhhcCCCCCcH----HHHhhcCC
Confidence 9999996332 2588999999999999999999999 4454331 1111110 00000110
Q ss_pred C-----------ccc--------CCcccCcccccccccccCCCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecc
Q 012397 184 R-----------VAV--------DSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGI 244 (464)
Q Consensus 184 ~-----------~~~--------~~~k~~~~d~~~w~~~~~g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~ 244 (464)
. +.+ ........|+.+||. ++.|+|+.++.. -....|.+..| -|.
T Consensus 260 ~~~iR~k~~~~~~~~~D~v~G~~~~~~~~~~D~Vl~R~-------------dg~ptY~~a~vv-DD~~~githvi--rG~ 323 (592)
T 3al0_C 260 PVTIKFKVLPGKTSFEDLLKGYMEFDNSTLEDFIIMKS-------------NGFPTYNFAVVV-DDHLMRISHVF--RGE 323 (592)
T ss_dssp CEEEEECCCSSCCEECCTTTCSEECCSSSSCCEEEECT-------------TSCCCHHHHHHH-HHHHTTCSBCC--EEG
T ss_pred CceEEEECCCCCceeeecccceeeeccccCCCeEEEcC-------------CCCeehhhHHHH-HHHhcCCCeEE--Ech
Confidence 0 000 000012235555543 578899887642 23334544444 578
Q ss_pred cCccccchHHHHHH---hhccCCCCccEEEEeeeeee-CCcccccccCCccCHHHHHH-hcCchhHHHHHhhc
Q 012397 245 DLIFPHHENEIAQS---CAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITE-RYHPLALRHFLISA 312 (464)
Q Consensus 245 D~~~~h~~~~~a~~---~a~~~~~~~~~~~~~~~v~~-~G~KmSks~gn~i~~~dll~-~~~~dalR~~ll~~ 312 (464)
| |+.+.+.+. .+++.++| . +.|..+++. +|+|||||+|+ +++.++.+ .|.|+++|.|++..
T Consensus 324 D----~~~~t~~q~~l~~alg~~~P-~-~~hlpli~~~~g~KLSKR~g~-~~l~~~~~~G~~peal~~~l~~l 389 (592)
T 3al0_C 324 D----HLSNTPKQLMIYEAFGWEAP-V-FMHIPLILGSDRTPLSKRHGA-TSVEHFRREGILSRALMNYLALL 389 (592)
T ss_dssp G----GGGGHHHHHHHHTTTTCCCC-B-CCEECCCBCTTSSBCCTTTCS-SBHHHHHHTTCCHHHHHHHHTTT
T ss_pred h----hHhCHHHHHHHHHHhCCCCC-e-EEEeeeeeCCCCCcccccCCc-ccHHHHHHCCCCHHHHHHHHHHh
Confidence 9 665555444 45554443 3 367677654 89999999999 68999998 58999999999875
No 34
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=99.76 E-value=2.6e-17 Score=169.14 Aligned_cols=231 Identities=18% Similarity=0.179 Sum_probs=148.7
Q ss_pred CCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 012397 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (464)
Q Consensus 46 ~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~~ 125 (464)
.|+|||.|||||+|+++....+|| ...|. ++.-++|.+. ..-...+.+.|.++|++||+.++
T Consensus 31 APsPtG~LHiG~~rtal~n~l~Ar--~~~G~---filRieDtD~-------------~R~~~~~~~~I~~dL~wlGl~wD 92 (488)
T 3afh_A 31 APSPTGHLHVGGARTALFNWMFAR--KEGGK---FILRIEDTDT-------------ERSSREYEQQILESLRWCGLDWD 92 (488)
T ss_dssp CCCCSSSCBHHHHHHHHHHHHHHH--HHTCE---EEECBCCCCT-------------TTCCHHHHHHHHHHHHHTTCCCS
T ss_pred CCCCCCCccHHHHHHHHHHHHHHH--HcCCE---EEEEEeeCCc-------------ccccHHHHHHHHHHHHHcCCCCC
Confidence 589999999999999999999988 44555 4445555543 11234578889999999999964
Q ss_pred CC--------CCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCCC------CCCCCCCCccccccccCCC----ccc
Q 012397 126 TY--------QPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKS------PNYGRLSGQRLENNRAGER----VAV 187 (464)
Q Consensus 126 ~~--------~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~------~~~g~l~~~~~~~~~~g~~----~~~ 187 (464)
.. ..++|++.+.+++.+++|+++|++| .|||..+. +.|..- ...+.+|.. +..
T Consensus 93 e~~~~gG~~gp~~QSer~~~y~~~~~~L~~~G~aY-----~c~ct~eel~~~~~~~Y~~~----~~~~~~G~~~~iR~k~ 163 (488)
T 3afh_A 93 EGPDIGGDFGPYRQSERLEIYREYAEKLVEDKRAY-----YVVYDKEDPSKELFTTYEYP----HEYKEKGHPVTIKFKV 163 (488)
T ss_dssp BBTTTBCTTCCCBGGGCHHHHHHHHHHHHHTTSEE-----EEEECSSSTTSEEEEESSCC----HHHHHTTCCEEEEECC
T ss_pred cCCCCCCCCCCeeeeCCHHHHHHHHHHHHHcCCeE-----ecCCCHHHHHhhcCCCCCch----hhHHhcCCCceEEEEC
Confidence 32 3688999999999999999999999 55654421 011100 000011110 000
Q ss_pred C---------------CcccCcccccccccccCCCCcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCccccch
Q 012397 188 D---------------SRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHE 252 (464)
Q Consensus 188 ~---------------~~k~~~~d~~~w~~~~~g~~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h~~ 252 (464)
+ .......|+.++|. ++.|+|+.++.. -....| ++-.+-|.| |+.
T Consensus 164 ~~~~~~~~D~v~G~~~~~~~~~~D~Vl~R~-------------DG~PtY~lA~vV-DD~~mg--IThViRG~D----~l~ 223 (488)
T 3afh_A 164 LPGKTSFEDLLKGYMEFDNSTLEDFIIMKS-------------NGFPTYNFAVVV-DDHLMR--ISHVFRGED----HLS 223 (488)
T ss_dssp CSSEEEEEETTTEEEEEEGGGSCCEEEECT-------------TSCBCHHHHHHH-HHHHTT--CSEEEEEGG----GGG
T ss_pred CCCceeEEeccceeEeecCCCCCCeEEEec-------------CCCeehhhHHHH-HHHhcC--CCEEEEchh----hhh
Confidence 0 00011135555543 578899877642 233344 344445889 666
Q ss_pred HHHHHH---hhccCCCCccEEEEeeeeee-CCcccccccCCccCHHHHHH-hcCchhHHHHHhhcCC--CCccCCCHHHH
Q 012397 253 NEIAQS---CAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITE-RYHPLALRHFLISAHY--RSPLNYSVLQL 325 (464)
Q Consensus 253 ~~~a~~---~a~~~~~~~~~~~~~~~v~~-~G~KmSks~gn~i~~~dll~-~~~~dalR~~ll~~~~--~~~~~f~~~~~ 325 (464)
+.+.+. .+++.++| .+.|..+++. +|+|||||+|+ +++.++.+ .|.|++++.|++...+ ..+-.|+.+++
T Consensus 224 ~tp~q~~l~~aLG~~~P--~f~H~pli~~~~g~KLSKR~g~-~~l~~~r~~G~~peal~n~l~~lG~s~~~~e~~s~~e~ 300 (488)
T 3afh_A 224 NTPKQLMIYEAFGWEAP--VFMHIPLILGSDRTPLSKRHGA-TSVEHFRREGILSRALMNYLALLGWRVEGDEIFTIEEK 300 (488)
T ss_dssp GHHHHHHHHHHHTCCCC--EEEEECCEECTTSSBCCTTTSC-CBHHHHHHHTCCHHHHHHHHHHTTCCCSSCSCCCHHHH
T ss_pred CHHHHHHHHHHcCCCCC--eEEEEeeeeCCCCCcccCcCCc-ccHHHHHHCCCCHHHHHHHHHHhCCCCcccccCCHHHH
Confidence 555444 45555543 3578777765 89999999999 68999988 4899999999987533 22245666654
Q ss_pred H
Q 012397 326 D 326 (464)
Q Consensus 326 ~ 326 (464)
.
T Consensus 301 i 301 (488)
T 3afh_A 301 L 301 (488)
T ss_dssp G
T ss_pred H
Confidence 3
No 35
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=99.72 E-value=3.4e-16 Score=162.67 Aligned_cols=248 Identities=16% Similarity=0.108 Sum_probs=150.7
Q ss_pred CCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 012397 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (464)
Q Consensus 46 ~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~~ 125 (464)
.|+|||+|||||||++++...+|| +..|.=++.+--| +. .....++.+.|.++|++||+.++
T Consensus 30 APsPtG~LHiG~artAl~n~~~Ar--~~~G~fiLRieDt---D~-------------~R~~~~~~~~I~~~L~wlGl~wD 91 (512)
T 4gri_A 30 APSPTGLQHIGGIRTALFNYFFAK--SCGGKFLLRIEDT---DQ-------------SRYSPEAENDLYSSLKWLGISFD 91 (512)
T ss_dssp CCCSSSCCBHHHHHHHHHHHHHHH--HTTCEEEECBCCC---CT-------------TSCCHHHHHHHHHHHHHHTCCCS
T ss_pred CcCCCCcccHHHHHHHHHHHHHHH--HcCCEEEEEeCcC---CC-------------CcCCHHHHHHHHHHHHHcCCCCC
Confidence 488999999999999999999999 5677555544444 42 11124578899999999999974
Q ss_pred CC--------CCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCC------------------CCCCCCCCCcccccc
Q 012397 126 TY--------QPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK------------------SPNYGRLSGQRLENN 179 (464)
Q Consensus 126 ~~--------~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~------------------~~~~g~l~~~~~~~~ 179 (464)
+. ..++|++.+.+++...+|+++|++| .|||... +..|..++..+....
T Consensus 92 e~p~~~g~~~py~QS~r~~~Y~~~~~~L~~~G~aY-----~C~ct~~el~~~r~~~~~~~~~~~y~~~~~~~~~~~~~~~ 166 (512)
T 4gri_A 92 EGPVVGGDYAPYVQSQRSAIYKQYAKYLIESGHAY-----YCYCSPERLERIKKIQNINKMPPGYDRHCRNLSNEEVENA 166 (512)
T ss_dssp BBTTTBCTTCCCBGGGCHHHHHHHHHHHHHTTSEE-----EECCCHHHHHHHHHHHHHTTCCCSCCCTTTTCCHHHHHHH
T ss_pred cCCccCCCCCCccccchHHHHHHHHHHHHHcCCcc-----ccccchHHHHHHHHhhhccCCCCccchhhcccchhhhhhh
Confidence 32 2378899999999999999999999 5666431 112322322111110
Q ss_pred -ccCCCcccCCcccCc-ccccccccccCCCCc---------ccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCcc
Q 012397 180 -RAGERVAVDSRKRNP-ADFALWKAAKAGEPS---------WDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIF 248 (464)
Q Consensus 180 -~~g~~~~~~~~k~~~-~d~~~w~~~~~g~~~---------~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~ 248 (464)
..|....+. .+... .+. .|...-.|... .......+.|+|+.++... ....| ++-.+-|.|
T Consensus 167 ~~~~~~~~~R-~k~~~~~~~-~~~D~v~g~i~~~~~~~~~D~vi~r~dg~PtY~fA~vVD-D~~mg--ITHViRG~D--- 238 (512)
T 4gri_A 167 LIKKIKPVVR-FKIPLEGDT-SFDDILLGRITWANKDISPDPVILKSDGLPTYHLANVVD-DYLMK--ITHVLRAQE--- 238 (512)
T ss_dssp HHTTCCCEEE-ECCCSSCEE-EEEETTTEEEEEEGGGSCSSCEEECTTSCBCHHHHHHHH-HHHTT--CSEEEEEGG---
T ss_pred hhhhccceee-ecccccCCc-eeeccccceEEecccccCCceEEEecCCcccccccceec-ccccC--Cceeccccc---
Confidence 011100000 00000 000 01100000000 0011235678888775321 22343 556666789
Q ss_pred ccchHHH---HHHhhccCCCCccEEEEeeeeee-CCcccccccCCccCHHHHHHh-cCchhHHHHHhhcC--CCC-ccCC
Q 012397 249 PHHENEI---AQSCAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITER-YHPLALRHFLISAH--YRS-PLNY 320 (464)
Q Consensus 249 ~h~~~~~---a~~~a~~~~~~~~~~~~~~~v~~-~G~KmSks~gn~i~~~dll~~-~~~dalR~~ll~~~--~~~-~~~f 320 (464)
|..+.+ .+..+++.++|. +.|...++. +|+|+|||.|. .++.+..+. |-|+|+.-|++.-. ++. .--|
T Consensus 239 -~l~sTp~q~~l~~alg~~~P~--y~H~pli~~~~g~kLSKR~~~-~~v~~~~~~G~lPeAl~NyLalLGws~~~~~Eif 314 (512)
T 4gri_A 239 -WVSSGPLHVLLYKAFKWKPPI--YCHLPMVMGNDGQKLSKRHGS-TALRQFIEDGYLPEAIINYVTLLGWSYDDKREFF 314 (512)
T ss_dssp -GGGGHHHHHHHHHHHTCCCCE--EEEECCCBCTTSSBCCTTTSC-CBHHHHHHHTCCHHHHHHHHHHSSBCSSSSCCCC
T ss_pred -cccccHHHHHHHHHcCCCCCe--EEecchhccccccccCccccc-ccHHHHHHcCCChHHHHHHHHHhCCCCcccchhh
Confidence 554443 334555655443 578888776 89999999988 688888875 99999999987753 333 3568
Q ss_pred CHHHHHHH
Q 012397 321 SVLQLDSA 328 (464)
Q Consensus 321 ~~~~~~~~ 328 (464)
+.+++.+.
T Consensus 315 s~~eli~~ 322 (512)
T 4gri_A 315 SKNDLEQF 322 (512)
T ss_dssp CHHHHHHH
T ss_pred hHHHHHHH
Confidence 88887754
No 36
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=99.71 E-value=1.8e-16 Score=162.83 Aligned_cols=232 Identities=17% Similarity=0.121 Sum_probs=143.2
Q ss_pred CCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 012397 46 GVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPP 125 (464)
Q Consensus 46 ~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~~ 125 (464)
.|+|+|+|||||+|+++....+|| ...|.=++.|--|| . ......+.+.|.++|++||+.++
T Consensus 12 APsPTG~LHiG~~rtAL~n~l~Ar--~~gG~fiLRieDtD---~-------------~R~~~~~~~~I~~~L~wlGl~wD 73 (498)
T 2ja2_A 12 CPSPTGTPHVGLVRTALFNWAYAR--HTGGTFVFRIEDTD---A-------------QRDSEESYLALLDALRWLGLDWD 73 (498)
T ss_dssp CCCSSSSCBHHHHHHHHHHHHHHH--HHTCEEEECBCCCC---T-------------TTCCHHHHHHHHHHHHHHTCCCS
T ss_pred CcCCCCCccHHHHHHHHHHHHHHH--HcCCEEEEEECcCC---C-------------cccChHHHHHHHHHHHHcCCCcC
Confidence 388999999999999999999999 56775555454444 2 22234578899999999999975
Q ss_pred C--------CCCCcchhHHHHHHHHHHHHHCCceEeecCcEEEcCCC-------------CC----CCCCCCCccccc-c
Q 012397 126 T--------YQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK-------------SP----NYGRLSGQRLEN-N 179 (464)
Q Consensus 126 ~--------~~~r~s~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~-------------~~----~~g~l~~~~~~~-~ 179 (464)
. ...++|++.+.+++...+|+++|++| .|||..+ .+ .|..++..+... .
T Consensus 74 egp~~gG~~~~~~QS~r~~~y~~~~~~L~~~g~aY-----~c~ct~eel~~~r~~~~~~~~~~Y~~~cr~l~~~e~~~~~ 148 (498)
T 2ja2_A 74 EGPEVGGPYGPYRQSQRAEIYRDVLARLLAAGEAY-----HAFSTPEEVEARHVAAGRNPKLGYDNFDRHLTDAQRAAYL 148 (498)
T ss_dssp BBTTTBCTTCCCBGGGCHHHHHHHHHHHHHTTSEE-----EECCCHHHHHHHHHHTTCCTTSCCCCGGGGCCHHHHHHHH
T ss_pred CCcCcCCCCCCeeeecCHHHHHHHHHHHHHcCCeE-----EeCCCHHHHHHHHHHHhcCCCCCCCCccccCCHHHHHhhh
Confidence 4 36788999999999999999999999 5555431 01 122222211111 1
Q ss_pred ccCCCcccCCcccCcccccccccccCC-------C-CcccCCCCCCCCchhhHHHHHHHhhcCCCeeEEEecccCccccc
Q 012397 180 RAGERVAVDSRKRNPADFALWKAAKAG-------E-PSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHH 251 (464)
Q Consensus 180 ~~g~~~~~~~~k~~~~d~~~w~~~~~g-------~-~~~~~~wg~~~P~w~~~~~~~~~~~~~~~~~i~~~G~D~~~~h~ 251 (464)
.+|....+. .|. |..-..|...--| . ..+.....++.|+|+.++... ....| ++-.+-|.| |.
T Consensus 149 ~~g~~~~iR-~k~-~~~~~~~~D~v~G~i~~~~~~~~D~Vi~R~Dg~ptY~lA~vVD-D~~mg--ithviRG~D----~~ 219 (498)
T 2ja2_A 149 AEGRQPVVR-LRM-PDDDLAWNDLVRGPVTFAAGSVPDFALTRASGDPLYTLVNPCD-DALMK--ITHVLRGED----LL 219 (498)
T ss_dssp HTTCCCEEE-ECC-CSSCEEEEETTTEEEEECTTCSCCCBSBCTTSCBCHHHHHHHH-HHHTT--CCEEEEEGG----GG
T ss_pred ccCCCceEE-EEC-CCCceEEEecccceEeecccccCcceeEccCCCcchhhHHHHH-hhhcC--CCEEEEChh----hh
Confidence 122210000 000 0000011100000 0 011222346788888765321 22344 455567889 55
Q ss_pred hHHH---HHHhhc-----cCCCCccEEEEeeeeee-CCcccccccCCccCHHHHHHh-cCchhHHHHHhhc
Q 012397 252 ENEI---AQSCAA-----CQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITER-YHPLALRHFLISA 312 (464)
Q Consensus 252 ~~~~---a~~~a~-----~~~~~~~~~~~~~~v~~-~G~KmSks~gn~i~~~dll~~-~~~dalR~~ll~~ 312 (464)
.+.+ .+..++ +.++| .+.|..+++. +|+|||||+|+ +++.++.+. |.|+++|.|++..
T Consensus 220 ~~t~~q~~l~~aL~~~g~g~~~P--~~~h~plil~~~g~KLSKR~g~-~~l~~~r~~G~~peAl~~~l~~l 287 (498)
T 2ja2_A 220 PSTPRQLALHQALIRIGVAERIP--KFAHLPTVLGEGTKKLSKRDPQ-SNLFAHRDRGFIPEGLLNYLALL 287 (498)
T ss_dssp GGHHHHHHHHHHHHHTTSCCCCC--EEEEECCEECSSSSBCCTTSGG-GBHHHHHHHTCCHHHHHHHHHTS
T ss_pred hccHHHHHHHHHHHhhcCCCCCC--eEEEeeeeECCCCCcccccCCc-ccHHHHHhCCCCHHHHHHHHHHh
Confidence 4433 344555 54443 3467777664 89999999999 689999884 9999999999875
No 37
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=98.68 E-value=2.6e-08 Score=97.69 Aligned_cols=69 Identities=26% Similarity=0.286 Sum_probs=48.0
Q ss_pred CeeEEEecccCccccchHHHHHHhhccCCCCccEEEEeeeee-eCCcccccccCCccCHHHHHHhcCchhHHHHHhhc
Q 012397 236 KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 312 (464)
Q Consensus 236 ~~~i~~~G~D~~~~h~~~~~a~~~a~~~~~~~~~~~~~~~v~-~~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~ 312 (464)
.+++++.|.|+.. |.....-.....+..+|. .+|+.++. ++|+|||||.||.|++.| .++++|..+.+.
T Consensus 170 ~~~~v~~G~DQ~~-~~~l~rdla~~~~~~~p~--~l~~pll~~l~G~KMSKS~~n~I~l~d-----~p~~i~~Ki~~a 239 (323)
T 2cyb_A 170 GVDLAVGGIDQRK-IHMLARENLPRLGYSSPV--CLHTPILVGLDGQKMSSSKGNYISVRD-----PPEEVERKIRKA 239 (323)
T ss_dssp TCSEEEEEGGGHH-HHHHHHHHGGGGTCCCCE--EEEECCCBCTTSSBCCTTTTCSCBTTC-----CHHHHHHHHHTS
T ss_pred CCCEEEechhhHH-HHHHHHHHHHhcCCCCce--EEecCcccCCCCCcccCCcCceeCCCC-----CHHHHHHHHHhc
Confidence 6889999999654 332222222223333332 35667765 499999999999999988 699999999875
No 38
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=98.14 E-value=5.9e-06 Score=81.13 Aligned_cols=72 Identities=14% Similarity=0.110 Sum_probs=45.9
Q ss_pred EEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q 012397 42 MYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQ 121 (464)
Q Consensus 42 v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lg 121 (464)
.+.+|.-|+|.|||||...++. -.+.+...|+++.+.- .|.|+. ... ..+|.. ..++......++.++|
T Consensus 14 ~v~~G~~PTG~lHLGn~~g~l~---~~~~lQ~~G~~~~~~I-aD~ha~--t~~----~~dp~~-~~~~~~~~~~~~lA~G 82 (340)
T 2g36_A 14 RILSGMRPTGKLHIGHLVGALE---NWVKLQEEGNECFYFV-ADWHAL--TTH----YDDVSK-LKEYTRDLVRGFLACG 82 (340)
T ss_dssp EEEEEECCCSSCBHHHHHTHHH---HHHHHHHTTCEEEEEE-CHHHHH--HHH----TTCCTT-HHHHHHHHHHHHHHTT
T ss_pred eEEEeeCCCCcccHHhHHHHHH---HHHHHHHCCCCEEEEE-ecceee--cCC----CCCHHH-HHHHHHHHHHHHHHhC
Confidence 5667788999999999876643 3334556899988764 333321 111 235544 3445556667788899
Q ss_pred CCC
Q 012397 122 CLP 124 (464)
Q Consensus 122 i~~ 124 (464)
+.+
T Consensus 83 ldp 85 (340)
T 2g36_A 83 IDP 85 (340)
T ss_dssp CCT
T ss_pred CCh
Confidence 874
No 39
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=98.02 E-value=1.2e-05 Score=80.66 Aligned_cols=85 Identities=14% Similarity=0.063 Sum_probs=47.9
Q ss_pred CcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecC-----CccccHHHHHHHHHcCCChHHHHHHHHHH
Q 012397 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRN-----FTDVDDKIIRRANDLGENPLSLSNRYCQE 112 (464)
Q Consensus 38 ~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~-----~dd~g~~i~~~a~~~g~~~~~~~~~~~~~ 112 (464)
++...+.+|--|+|.|||||+.+++. +.++++ .|+++.+.-+ +++-..+. ...+..++.+...
T Consensus 37 ~~p~~vy~G~~PTG~LHlG~~~~al~---~~~~~q-~g~~~ii~I~D~ha~t~~~~~~~--------e~~~~~~~~~~~~ 104 (394)
T 2dlc_X 37 KRHLKLYWGTAPTGRPHCGYFVPMTK---LADFLK-AGCEVTVLLADLHAFLDNMKAPL--------EVVNYRAKYYELT 104 (394)
T ss_dssp CSCCEEEEEECCCSCCBGGGHHHHHH---HHHHHH-TTCEEEEEECHHHHHHTTTSSCT--------THHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCccHHHHHHHHH---HHHHHH-cCCcEEEEEcCCccccCCCCCcH--------HHHHHHHHHHHHH
Confidence 34445556677789999999877764 444454 7888764432 22211000 0012233445567
Q ss_pred HHHHHHhcCCCCCC-CCCCcchh
Q 012397 113 YLVDMADLQCLPPT-YQPRVSDH 134 (464)
Q Consensus 113 ~~~~l~~lgi~~~~-~~~r~s~~ 134 (464)
+...|.++|+.+.. .+...|+.
T Consensus 105 i~~~l~a~Gldp~k~~i~~qS~~ 127 (394)
T 2dlc_X 105 IKAILRSINVPIEKLKFVVGSSY 127 (394)
T ss_dssp HHHHHHHTTCCCTTCEEEETHHH
T ss_pred HHHHHHHcCCChhHcEEEeCchh
Confidence 77788999997532 23444443
No 40
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=97.98 E-value=1.1e-05 Score=78.58 Aligned_cols=82 Identities=9% Similarity=-0.072 Sum_probs=48.7
Q ss_pred CcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 012397 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDM 117 (464)
Q Consensus 38 ~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l 117 (464)
++...+.+|--|+|.|||||+.... ..+.+...|+++.+.-+ |.++. .. . ..++ +-.+++...+..++
T Consensus 26 ~~~~~vy~G~~PTg~lHlGhl~~l~----~~~~lQ~~g~~~~~~i~-D~~a~--~~---~-~~~~-e~i~~~~~~~~~~~ 93 (314)
T 2zp1_A 26 KDEKSAYIGFEPSGKIHLGHYLQIK----KMIDLQNAGFDIIILLA-DLAAY--LN---Q-KGEL-DEIRKIGDYNKKVF 93 (314)
T ss_dssp SSSEEEEEEECCCSSCBHHHHHHHH----HHHHHHHTTEEEEEEEC-HHHHH--HT---T-CCCH-HHHHHHHHHHHHHH
T ss_pred CCCCEEEEccCCCCCcchhhHHHHH----HHHHHHHCCCCEEEEEe-cceEe--cC---C-CCCH-HHHHHHHHHHHHHH
Confidence 3445666778888999999944432 34455567988865543 22221 00 0 1133 33445667888899
Q ss_pred HhcCCCCCCCCCCcch
Q 012397 118 ADLQCLPPTYQPRVSD 133 (464)
Q Consensus 118 ~~lgi~~~~~~~r~s~ 133 (464)
.++|+. ..+...|+
T Consensus 94 ~a~G~d--~~~~~qs~ 107 (314)
T 2zp1_A 94 EAMGLK--AKYVYGSE 107 (314)
T ss_dssp HHTTCC--CEEEEGGG
T ss_pred HhcCCC--eEEEECCh
Confidence 999986 44554453
No 41
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=97.92 E-value=2.3e-05 Score=78.05 Aligned_cols=68 Identities=22% Similarity=0.083 Sum_probs=35.1
Q ss_pred CeeEEEecccCccccchHHHHHHhhccCCCCccEEEEeeeee-eCCcccccccCC-ccCHHHHHHhcCchhHHHHHhh
Q 012397 236 KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGN-FFTIRQITERYHPLALRHFLIS 311 (464)
Q Consensus 236 ~~~i~~~G~D~~~~h~~~~~a~~~a~~~~~~~~~~~~~~~v~-~~G~KmSks~gn-~i~~~dll~~~~~dalR~~ll~ 311 (464)
..+++++|.|+.. |.....-.....+..+|. .+++.++. ++|+|||||.|| .|++.| +++.++=.+.+
T Consensus 178 ~a~~v~~G~DQ~~-~~~l~rdl~~r~~~~~p~--~l~~pll~gldG~KMSKS~~ns~I~L~d-----~p~~i~kKi~~ 247 (372)
T 1n3l_A 178 KVDAQFGGIDQRK-IFTFAEKYLPALGYSKRV--HLMNPMVPGLTGSKMSSSEEESKIDLLD-----RKEDVKKKLKK 247 (372)
T ss_dssp TCSEEEEEGGGHH-HHHHHHHHGGGGTCCCCE--EEEECCCCCSSCC-------CCSCBTTC-----CHHHHHHHHHT
T ss_pred cCCEEEcChhHHH-HHHHHHHHHHHcCCCCCE--EEecCccCCCCcccccCCCCCCeEeccC-----CHHHHHHHHHH
Confidence 5789999999542 222222222223333333 34555654 499999999999 798876 46666666655
No 42
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=97.88 E-value=2.2e-05 Score=77.92 Aligned_cols=75 Identities=12% Similarity=-0.036 Sum_probs=44.5
Q ss_pred ceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q 012397 40 VGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMAD 119 (464)
Q Consensus 40 ~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 119 (464)
...+.+|--|+|.|||||+.... ..+.+...|+++.+.-+ |.|+. + -...|.+++++. ++...+..++..
T Consensus 35 ~~~iy~G~~PTg~lHlG~l~~l~----~~~~lQ~~G~~~~~~ia-D~~a~-~---~~ps~~~~e~i~-~~~~~~~~~~la 104 (364)
T 2cya_A 35 RIKGYIGYEPSGVAHIGWLVWMY----KVKDLVEAGVDFSVLEA-TWHAY-I---NDKLGGDMDLIR-AAARIVRRVMEA 104 (364)
T ss_dssp CCEEEEEECCCSSCBTHHHHHHH----HHHHHHHTTCEEEEEEC-HHHHH-H---TTGGGGCHHHHH-HHHHHHHHHHHH
T ss_pred CCEEEeccCCCCCccHhHHHHHH----HHHHHHHCCCCEEEEEe-Ccchh-h---CCCCCCCHHHHH-HHHHHHHHHHHH
Confidence 34556678888999999944432 33445557999876544 32321 0 001123444433 455677888999
Q ss_pred cCCCC
Q 012397 120 LQCLP 124 (464)
Q Consensus 120 lgi~~ 124 (464)
+|+.+
T Consensus 105 ~G~dp 109 (364)
T 2cya_A 105 AGVPV 109 (364)
T ss_dssp TTCCG
T ss_pred hCCCc
Confidence 99974
No 43
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=97.79 E-value=5.3e-05 Score=74.29 Aligned_cols=80 Identities=20% Similarity=0.038 Sum_probs=43.2
Q ss_pred CeeEEEecccCccccchHHHHHHhh----cc--CCCCccEEEEe---eeee-eCC-cccccccCCccCHHHHHHhcCchh
Q 012397 236 KFDIHGGGIDLIFPHHENEIAQSCA----AC--QDSNVSYWMHN---GHVT-NNN-EKMSKSLGNFFTIRQITERYHPLA 304 (464)
Q Consensus 236 ~~~i~~~G~D~~~~h~~~~~a~~~a----~~--~~~~~~~~~~~---~~v~-~~G-~KmSks~gn~i~~~dll~~~~~da 304 (464)
..+++++|.|+.. |.....-.... ++ ...| .. ++. ..+. ++| +|||||.||.|++.| .++.
T Consensus 141 ~~~lvp~G~DQ~~-~i~l~rdla~r~n~~~g~~f~~P-~~-~~~~~~p~l~gldG~~KMSKS~~n~I~L~d-----~p~~ 212 (337)
T 2el7_A 141 KADTVPVGEDQVQ-HIELTREIARRFNHLFGETFPEP-QA-LLNPEAPRVPGIDGKAKMSKSLGNTIGLLE-----PEES 212 (337)
T ss_dssp TCCEEECCGGGCH-HHHHHHHHHHHHHHHHSSCCCCC-EE-ECCTTSCCCBCTTSSSBCCTTTTCCCBSSS-----CHHH
T ss_pred CCcEEEcccchHH-HHHHHHHHHHHHHhhcCcccCCC-ee-ecccccccccCCCCccccCCCCCCeeeCcC-----CHHH
Confidence 5899999999653 33222211111 12 1222 22 333 2443 389 899999999999887 4777
Q ss_pred HHHHHhhc--CCCCccCCCHH
Q 012397 305 LRHFLISA--HYRSPLNYSVL 323 (464)
Q Consensus 305 lR~~ll~~--~~~~~~~f~~~ 323 (464)
++=.+.+. +....+.++..
T Consensus 213 i~~Ki~~a~td~~~~~~~~~~ 233 (337)
T 2el7_A 213 IWQKIQHLPDDPQRIRLSDPG 233 (337)
T ss_dssp HHHHHHTCCCCC---------
T ss_pred HHHHHHhCCCCCccccccCCC
Confidence 77777664 33334444443
No 44
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=97.70 E-value=0.00027 Score=70.31 Aligned_cols=76 Identities=7% Similarity=-0.065 Sum_probs=47.1
Q ss_pred CcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 012397 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDM 117 (464)
Q Consensus 38 ~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l 117 (464)
++...+.+|--|+|+|||||.-.+ ..+.++++..|..+.++ +.|.. +......+++++.+ +...+..++
T Consensus 80 ~~~~~vysG~~PTG~lHLGh~v~~---~~~~~lQ~~~g~~v~i~--I~D~~-----a~~~r~~~~e~i~~-~~~~~~~~~ 148 (386)
T 3hzr_A 80 KKPTFIFIQKYPQKEVALEEYITL---EFARYLQDAFNIQVIIQ--ILDDI-----KVLNREATINEASK-MSNDLMKYI 148 (386)
T ss_dssp TCCEEEEEEECCCSSCBGGGHHHH---HHHHHHHHHHCCEEEEE--ECHHH-----HHHTTSCCHHHHHH-HHHHHHHHH
T ss_pred CCCeEEEeccCCCCCccHHHHHHH---HHHHHHHHhcCCeEEEE--eCchH-----HhhcCCCCHHHHHH-HHHHHHHHH
Confidence 555667788999999999995443 33444444458888877 33322 11122256655444 445677788
Q ss_pred HhcCCCC
Q 012397 118 ADLQCLP 124 (464)
Q Consensus 118 ~~lgi~~ 124 (464)
-.+|+.+
T Consensus 149 lA~GlDp 155 (386)
T 3hzr_A 149 LAFGFNE 155 (386)
T ss_dssp HHTCCCG
T ss_pred HHcCCCC
Confidence 8889874
No 45
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=97.65 E-value=1.2e-05 Score=78.31 Aligned_cols=69 Identities=12% Similarity=0.052 Sum_probs=41.0
Q ss_pred EEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCC
Q 012397 43 YVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQC 122 (464)
Q Consensus 43 ~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi 122 (464)
+.||--|+|.|||||.-.++.. +.++++ |+++.+.-+ |.|+.- -..++++ ..++...+..++...|+
T Consensus 6 vysG~~PTg~lHlG~~lg~l~~--~~~lQ~--g~~~~~~ia-D~ha~~-------~~~~~~~-l~~~~~~~~~~~lA~Gl 72 (322)
T 3tzl_A 6 VLTGLQPSGDLHIGNYFGAIKQ--MVDAQE--KSQMFMFIA-NYHAMT-------SSQDGEK-LKQNSLKAAAAFLSLGI 72 (322)
T ss_dssp BEEEECCSSCCBHHHHHHTHHH--HHHTTT--TSCCEEEEC-HHHHTT-------TCCCHHH-HHHHHHHHHHHHHHTTC
T ss_pred EEEccCCCccccHHHHHHHHHH--HHHHhc--CCCEEEEEe-cCeeec-------CCCCHHH-HHHHHHHHHHHHHHcCC
Confidence 4567888899999997654432 344443 999876543 433310 0113333 34455567777778898
Q ss_pred CC
Q 012397 123 LP 124 (464)
Q Consensus 123 ~~ 124 (464)
.+
T Consensus 73 dp 74 (322)
T 3tzl_A 73 DP 74 (322)
T ss_dssp CT
T ss_pred Cc
Confidence 74
No 46
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=97.55 E-value=0.00017 Score=71.57 Aligned_cols=76 Identities=7% Similarity=0.051 Sum_probs=42.9
Q ss_pred ceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHh
Q 012397 40 VGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMAD 119 (464)
Q Consensus 40 ~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~ 119 (464)
...+.+|--|+|.||||| .++..-.+.+ +...|+++.+.-+ |.|+. + . ...|.+++++ +.....+...+..
T Consensus 56 ~~~iy~G~~PTg~lHlG~--gvl~~~~~~~-lQ~~G~~~~~lIa-D~ha~-i-~--d~~~~~~~~i-~~~~~~~~~~~~a 126 (373)
T 3vgj_A 56 KLICYDGFEPSGRMHIAQ--GLLKSIIVNK-LTSNGCTFIFWIA-DWFAH-L-N--NKMSGDLKKI-KKVGSYFIEVWKS 126 (373)
T ss_dssp SCEEEEEECCCSSCBHHH--HHHHHHHHHH-HHTTTCEEEEEEC-HHHHH-H-T--TGGGGCHHHH-HHHHHHHHHHHHH
T ss_pred CceEEeCCCCCCCceehh--hHHHHHHHHH-HHHCCCcEEEEEe-cceeE-e-c--CCCCCCHHHH-HHHHHHHHHHHHH
Confidence 345667788889999999 2222222344 4457999887654 32321 0 0 0112333332 3444556678888
Q ss_pred cCCCC
Q 012397 120 LQCLP 124 (464)
Q Consensus 120 lgi~~ 124 (464)
+|+.+
T Consensus 127 ~G~dp 131 (373)
T 3vgj_A 127 CGMNM 131 (373)
T ss_dssp TTCCS
T ss_pred cCCCh
Confidence 99874
No 47
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=97.50 E-value=0.00026 Score=70.49 Aligned_cols=76 Identities=13% Similarity=0.156 Sum_probs=47.4
Q ss_pred CcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHH-CCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 012397 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEH-LKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVD 116 (464)
Q Consensus 38 ~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~-~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 116 (464)
++...+.+|--|+|.|||||.-.++ +.|++.. .|+++.+.-+ |.|.. .. ..+.++++ ..++...+..+
T Consensus 71 ~~p~~i~sG~~PTG~lHLGh~v~~~----~~~~lQ~~~g~~~~i~Ia-D~ha~--~~---~~~~~~e~-i~~~~~~~~~~ 139 (392)
T 3jxe_A 71 GRGFFLYTGRGPSGPMHIGHIIPFF----ATKWLQEKFGVNLYIQIT-DDEKF--LF---KENLTFDD-TKRWAYDNILD 139 (392)
T ss_dssp TCCCEEEEEECCSSCCBHHHHHHHH----HHHHHHHHHCCEEEEEEC-HHHHH--HH---CSSCCHHH-HHHHHHHHHHH
T ss_pred CCCeEEEeccCCCCchhHHHHHHHH----HHHHHHHhcCCceEEEec-chHHh--hc---CCCCCHHH-HHHHHHHHHHH
Confidence 4455666777788999999966553 2344554 7998887655 44321 10 11245544 34455677778
Q ss_pred HHhcCCCC
Q 012397 117 MADLQCLP 124 (464)
Q Consensus 117 l~~lgi~~ 124 (464)
+..+|+.+
T Consensus 140 ~lA~GlDp 147 (392)
T 3jxe_A 140 IIAVGFDP 147 (392)
T ss_dssp HHTTCCCT
T ss_pred HHHhCcCc
Confidence 88889874
No 48
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=97.50 E-value=0.00054 Score=68.28 Aligned_cols=76 Identities=13% Similarity=0.052 Sum_probs=45.7
Q ss_pred CcceEEEeCCCCC-CcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHc-CCChHHHHHHHHHHHHH
Q 012397 38 GKVGMYVCGVTAY-DLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDL-GENPLSLSNRYCQEYLV 115 (464)
Q Consensus 38 ~~~~v~~~~P~p~-G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~-g~~~~~~~~~~~~~~~~ 115 (464)
++...+.||--|+ |.|||||.-.+ ..+.++++..|..|.+. -.| .+ +.... ..+++++ .++...+..
T Consensus 72 g~~~~vy~G~~PTa~~lHlGh~v~~---~~~~~lQ~~~~~~v~i~-I~D-~~-----~~~~r~~~~~e~i-~~~~~~~~~ 140 (393)
T 3hv0_A 72 GELFYLYTGRGPSSESLHVGHLVPF---LFTKYLQDTFKVPLVIQ-LTD-DE-----KFIFKSNLTLEET-HNYAYENMK 140 (393)
T ss_dssp TCCCEEEEEECCSSSSCBSTTHHHH---HHHHHHHHHHCCCEEEE-ECH-HH-----HHHHCTTCCHHHH-HHHHHHHHH
T ss_pred CCCeEEEeCCCCCCCCccHHHHHHH---HHHHHHHHhcCCCeEee-ccC-hH-----HHhhccCCCHHHH-HHHHHHHHH
Confidence 5445666888899 78999995444 34555555557776652 223 22 22222 4555544 445556777
Q ss_pred HHHhcCCCC
Q 012397 116 DMADLQCLP 124 (464)
Q Consensus 116 ~l~~lgi~~ 124 (464)
++..+|+.+
T Consensus 141 ~~lA~GlDp 149 (393)
T 3hv0_A 141 DIIACGFDP 149 (393)
T ss_dssp HHHTTCCCT
T ss_pred HHHHcCCCC
Confidence 888889874
No 49
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=97.39 E-value=0.00037 Score=69.52 Aligned_cols=77 Identities=12% Similarity=0.046 Sum_probs=47.3
Q ss_pred CCcceEEEeCCCCCC-cCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHH
Q 012397 37 RGKVGMYVCGVTAYD-LSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLV 115 (464)
Q Consensus 37 ~~~~~v~~~~P~p~G-~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~ 115 (464)
.++...+.+|--|+| .|||||.-.+ ..+.++++..|..+..+- .|++ ++.....+++++. ++...+.+
T Consensus 75 ~~~~~~vy~G~~PTg~~lHLGh~v~~---~~~~~lQ~~~~~~v~i~I-~D~~------~~l~~~~~~e~i~-~~~~~~~~ 143 (395)
T 3i05_A 75 SGQPFYLYTGRGPSSESMHMGHLIPF---MFTKWLQDSFRVPLVIQM-TDDE------KFYFRNIPMEQVE-AMTTENIK 143 (395)
T ss_dssp TTCCEEEEEEECCCSSCCBGGGSHHH---HHHHHHHHHHTCCEEEEE-CHHH------HHHHSCCCHHHHH-HHHHHHHH
T ss_pred cCCCeEEEEeecCCCccchHHHHHHH---HHHHHHHHhcCCcEEEEE-cchH------HHhcCCCCHHHHH-HHHHHHHH
Confidence 355567778889998 7999996443 345555554577777652 2222 1222235555544 45567777
Q ss_pred HHHhcCCCC
Q 012397 116 DMADLQCLP 124 (464)
Q Consensus 116 ~l~~lgi~~ 124 (464)
++..+|+.+
T Consensus 144 ~~lA~GlDp 152 (395)
T 3i05_A 144 DIIAMGFDP 152 (395)
T ss_dssp HHHTTTCCT
T ss_pred HHHHcCCCC
Confidence 888888864
No 50
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=97.28 E-value=0.0014 Score=64.95 Aligned_cols=69 Identities=12% Similarity=0.100 Sum_probs=42.7
Q ss_pred EEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCC
Q 012397 43 YVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQC 122 (464)
Q Consensus 43 ~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi 122 (464)
+.+|--|+|.|||||.-.++.- + +.|. .|+++.+.- .|.|..- ...+++.+. ++..+...++...|+
T Consensus 38 i~sG~~PTG~lHLGhyvGal~~--~-~~LQ-~~~~~~~~I-aD~hAlt-------~~~~~~~lr-~~~~~~aa~~lA~Gl 104 (388)
T 3prh_A 38 IFSGIQPSGSVTLGNYIGAMKQ--F-VELQ-HDYNSYFCI-VDQHAIT-------VPQDRLELR-KNIRNLAALYLAVGL 104 (388)
T ss_dssp EEEEECCCSCCBHHHHHHTHHH--H-HHTT-TTSEEEEEE-CHHHHTT-------SCCCHHHHH-HHHHHHHHHHHHTTC
T ss_pred EEEeeCCCCcchHHHHHHHHHH--H-HHHH-ccCcEEEEE-ecceeee-------cCCCHHHHH-HHHHHHHHHHHHhCC
Confidence 6788999999999996555421 1 1222 489986543 3544321 023555443 344567778888999
Q ss_pred CC
Q 012397 123 LP 124 (464)
Q Consensus 123 ~~ 124 (464)
.+
T Consensus 105 Dp 106 (388)
T 3prh_A 105 DP 106 (388)
T ss_dssp CT
T ss_pred Ch
Confidence 74
No 51
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=97.27 E-value=0.00045 Score=68.67 Aligned_cols=75 Identities=12% Similarity=0.012 Sum_probs=41.4
Q ss_pred eEEEeCCCCCCcCCccc-chhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHH----HHHHHHHHH
Q 012397 41 GMYVCGVTAYDLSHLGH-ARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLS----NRYCQEYLV 115 (464)
Q Consensus 41 ~v~~~~P~p~G~lHiGH-ar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~----~~~~~~~~~ 115 (464)
..+.+|--|+|.||||| +.... -.+.+...|+++.+.-+ |.|+. + -...|.+++++. ..+...+..
T Consensus 34 ~~vy~G~~PTg~lHlG~yl~~l~----~~~~lQ~~G~~~~~~ia-D~ha~-~---~~~~g~~~e~i~~~~~~~~~~~~~~ 104 (375)
T 2cyc_A 34 LQHYIGFEISGYIHLGTGLMAGA----KIADFQKAGIKTRVFLA-DWHSW-I---NDKLGGDLEVIQEVALKYFKVGMEK 104 (375)
T ss_dssp CBEEEEECCCSCCBHHHHHHHHH----HHHHHHHTTCBCEEEEC-HHHHH-H---TTGGGGCHHHHHHHHHHTHHHHHHH
T ss_pred cEEEeCCCCCCCcCchHHHHHHH----HHHHHHHCCCcEEEEec-CcEEE-c---CCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 45566788889999999 66543 33344457998876543 11110 0 001123333332 223333447
Q ss_pred HHHhcCCCC
Q 012397 116 DMADLQCLP 124 (464)
Q Consensus 116 ~l~~lgi~~ 124 (464)
.+..+|+.+
T Consensus 105 ~~la~G~dp 113 (375)
T 2cyc_A 105 SIEVMGGDP 113 (375)
T ss_dssp HHHHTTCCG
T ss_pred HHHHhCCCc
Confidence 888999874
No 52
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=97.25 E-value=9.8e-05 Score=72.11 Aligned_cols=70 Identities=9% Similarity=0.075 Sum_probs=42.4
Q ss_pred EEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q 012397 42 MYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQ 121 (464)
Q Consensus 42 v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lg 121 (464)
.+.||--|+|.|||||...++.-- .+ +. .|+++.+.- .|.|+.-. ..++++ ..++...+.+++..+|
T Consensus 3 ~vysG~~PTG~lHlGn~vg~l~~~--~~-lQ-~g~~~~~~I-aD~ha~~~-------~~~~e~-i~~~~~~~~~~~la~G 69 (328)
T 1i6k_A 3 TIFSGIQPSGVITIGNYIGALRQF--VE-LQ-HEYNCYFCI-VDQHAITV-------WQDPHE-LRQNIRRLAALYLAVG 69 (328)
T ss_dssp EEEEEECCCSCCBHHHHHHTHHHH--HH-HT-TTSEEEEEE-CHHHHTTS-------CCCHHH-HHHHHHHHHHHHHHTT
T ss_pred EEEEeeCCCCcccHHHHHHHHHHH--HH-HH-cCCcEEEEE-eCceeecC-------CCCHHH-HHHHHHHHHHHHHHhC
Confidence 456778888999999987765221 12 22 399986443 23232100 134443 3345567888888999
Q ss_pred CCC
Q 012397 122 CLP 124 (464)
Q Consensus 122 i~~ 124 (464)
+.+
T Consensus 70 ldp 72 (328)
T 1i6k_A 70 IDP 72 (328)
T ss_dssp CCT
T ss_pred CCh
Confidence 974
No 53
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=97.16 E-value=0.0011 Score=66.36 Aligned_cols=76 Identities=16% Similarity=0.101 Sum_probs=45.7
Q ss_pred CcceEEEeCCCCCC-cCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 012397 38 GKVGMYVCGVTAYD-LSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVD 116 (464)
Q Consensus 38 ~~~~v~~~~P~p~G-~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 116 (464)
++...+.+|--|+| .|||||.-.+ ..+.++++..|..+... -.|.+. ... ...+++++ .++...+..+
T Consensus 99 ~~p~~vy~G~~PTg~~lHLGh~v~~---~~~~~lQ~~~g~~~~i~-IaD~~a--~l~----~~~~~e~i-~~~~~~~~~~ 167 (406)
T 3tze_A 99 NRPFYLYTGRGPSSKTMHIGHTIPF---LLCKYMQDAFKIRLVIQ-ITDDEK--FLW----KSMRLEDA-MAYGRENIKD 167 (406)
T ss_dssp TCCEEEEEEECCCSSCCBGGGHHHH---HHHHHHHHHHTCCEEEE-ECHHHH--HHH----SSCCHHHH-HHHHHHHHHH
T ss_pred CCCeEEEEeeCCCCCcccHHHHHHH---HHHHHHHHhcCCcEEEE-eeChHH--HcC----CCCCHHHH-HHHHHHHHHH
Confidence 55566778899998 8999995443 33444444448777663 223321 111 12455544 4455677777
Q ss_pred HHhcCCCC
Q 012397 117 MADLQCLP 124 (464)
Q Consensus 117 l~~lgi~~ 124 (464)
+-.+|+.+
T Consensus 168 ~lA~GlDp 175 (406)
T 3tze_A 168 IVTLGFDP 175 (406)
T ss_dssp HHTTTCCG
T ss_pred HHHcCCCc
Confidence 87888874
No 54
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=97.08 E-value=0.00053 Score=67.48 Aligned_cols=76 Identities=3% Similarity=-0.091 Sum_probs=43.4
Q ss_pred cceEEEeCCCCCCcCCccc-chhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 012397 39 KVGMYVCGVTAYDLSHLGH-ARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDM 117 (464)
Q Consensus 39 ~~~v~~~~P~p~G~lHiGH-ar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l 117 (464)
+...+.||--|+|.||||| +.... ..+.+...|+++.+.-+ |.|+. .. ...|.++++ .+++...+.+.+
T Consensus 39 ~~~~vy~G~~PTg~lHlGhyl~~l~----~~~~lQ~~G~~~~~~i~-D~~a~--~~--~~~~~~~e~-i~~~~~~~~~~~ 108 (348)
T 2j5b_A 39 RIFTAYNGFEPSGRIHIAQALITVM----NTNNMIECGGQMIIYIA-DWFAK--MN--LKMNGDINK-IRELGRYFIEVF 108 (348)
T ss_dssp CCEEEEEEECCCSSCBHHHHHHHHH----HHHHHHHTTEEEEEEEC-HHHHH--HT--TGGGGCHHH-HHHHHHHHHHHH
T ss_pred CCCEEEeccCCCCCCchhHHHHHHH----HHHHHHHcCCcEEEEec-cchhh--hC--CCCCCCHHH-HHHHHHHHHHHH
Confidence 3345577778889999999 44432 33344456998876543 22221 00 011234433 344556677778
Q ss_pred HhcCCCC
Q 012397 118 ADLQCLP 124 (464)
Q Consensus 118 ~~lgi~~ 124 (464)
..+|+.+
T Consensus 109 la~Gldp 115 (348)
T 2j5b_A 109 KACGINL 115 (348)
T ss_dssp HHTTCCG
T ss_pred HHhcCCc
Confidence 8889874
No 55
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=97.00 E-value=0.0016 Score=69.62 Aligned_cols=78 Identities=6% Similarity=-0.092 Sum_probs=43.8
Q ss_pred CcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Q 012397 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDM 117 (464)
Q Consensus 38 ~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l 117 (464)
++...+.+|--|+|.||||| .++..-.+.+ +...|+++.+.-+ |-|+.-. ...|.++++ .+.+...+.+.+
T Consensus 38 ~~~~~vy~G~~PTg~lHLG~--~v~~~~~~~~-lQ~~G~~~~~lIa-D~ha~~~----d~~~~~~e~-i~~~~~~~~~~~ 108 (690)
T 3p0j_A 38 KPLIRCYDGFEPSGRMHIAQ--GIFKAVNVNK-CTAAGCEFVFWVA-DWFALMN----DKVGGELEK-IRIVGRYLIEVW 108 (690)
T ss_dssp CTTEEEEEEECCCSCCBHHH--HHHHHHHHHH-HHHTTEEEEEEEC-CGGGGGG----CTTTTHHHH-HHHHHHHHHHHH
T ss_pred CCCceEEeeecCCCcchhHh--hHHHHHHHHH-HHHCCCcEEEEEe-eeEEEec----CCCcchHHH-HHHHHHHHHHHH
Confidence 34456677888999999999 2221212334 4457999876654 3333100 001223333 233445667778
Q ss_pred HhcCCCC
Q 012397 118 ADLQCLP 124 (464)
Q Consensus 118 ~~lgi~~ 124 (464)
..+|+.+
T Consensus 109 lA~GlDp 115 (690)
T 3p0j_A 109 KAAGMDM 115 (690)
T ss_dssp HHTTCCG
T ss_pred HHcCCCh
Confidence 8899874
No 56
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=96.91 E-value=0.0011 Score=66.96 Aligned_cols=77 Identities=18% Similarity=0.123 Sum_probs=46.3
Q ss_pred CcceEEEeCCCCC-CcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 012397 38 GKVGMYVCGVTAY-DLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVD 116 (464)
Q Consensus 38 ~~~~v~~~~P~p~-G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 116 (464)
++...+.||--|+ |.|||||.-+++ .+.++++..|+.+.+.-+ |.++- +. ....+++. ..++...+..+
T Consensus 100 g~~~~vy~G~dPTag~LHLGh~v~~~---~l~~lQ~~~g~~~i~lI~-D~ta~--l~---~~~~t~e~-i~~~~~~~~~~ 169 (432)
T 2ip1_A 100 GKPFFLYTGRGPSSDSMHLGHMIPFV---FTKWLQEVFDVPLVIELT-DDEKF--LF---KHKLTIND-VKNFARENAKD 169 (432)
T ss_dssp TCCCEEEEEECCCSSCCBGGGHHHHH---HHHHHHHHHTCCEEEEEC-HHHHH--HH---CTTCCHHH-HHHHHHHHHHH
T ss_pred CCCeEEEEeecCCCCCccHHHHHHHH---HHHHHHHHcCCeEEEEEe-cccce--eC---CCCCCHHH-HHHHHHHHHHH
Confidence 4455677888899 999999976554 233444448998776665 32221 10 11245443 45555566777
Q ss_pred HHhcCCCC
Q 012397 117 MADLQCLP 124 (464)
Q Consensus 117 l~~lgi~~ 124 (464)
+-.+|+.+
T Consensus 170 ~lA~GlDp 177 (432)
T 2ip1_A 170 IIAVGFDP 177 (432)
T ss_dssp HHTTTCCG
T ss_pred HHHhCCCC
Confidence 87888863
No 57
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=96.87 E-value=0.0016 Score=66.57 Aligned_cols=75 Identities=11% Similarity=0.030 Sum_probs=45.4
Q ss_pred CcceEEEeCCCCC-CcCCcccchhHHHHHHHHHHHHH-CCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHH
Q 012397 38 GKVGMYVCGVTAY-DLSHLGHARAAVSFDLLYRYLEH-LKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLV 115 (464)
Q Consensus 38 ~~~~v~~~~P~p~-G~lHiGHar~~l~~D~laR~lr~-~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~ 115 (464)
++...+.||--|+ |.|||||.-+++ +.|++.. .|+.+.+.-+=+ ++ .+.. ..++++ +.++...+..
T Consensus 153 ~~~~~vy~G~dPTag~LHLGh~v~~~----~~~~lQ~~~g~~~iilI~D~-~a--~igd----~lt~e~-i~~n~~~~~~ 220 (477)
T 1r6t_A 153 KKPFYLYTGRGPSSEAMHVGHLIPFI----FTKWLQDVFNVPLVIQMTDD-EK--YLWK----DLTLDQ-AYGDAVENAK 220 (477)
T ss_dssp TCCEEEEEEECCCTTCCBGGGHHHHH----HHHHHHHHHTCCEEEEECHH-HH--HHHS----SCCHHH-HHHHHHHHHH
T ss_pred CCCcEEEEcccCCCCCccHHHHHHHH----HHHHHHHHhCCcEEEEEecc-ee--eecC----CCCHHH-HHHHHHHHHH
Confidence 4556677888899 999999976654 2334554 899876554321 11 1111 345544 3445555666
Q ss_pred HHHhcCCCC
Q 012397 116 DMADLQCLP 124 (464)
Q Consensus 116 ~l~~lgi~~ 124 (464)
++-.+|+.+
T Consensus 221 ~~lA~GlDp 229 (477)
T 1r6t_A 221 DIIACGFDI 229 (477)
T ss_dssp HHHTTCCCT
T ss_pred HHHHhCCCC
Confidence 777788864
No 58
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=95.98 E-value=0.0084 Score=59.72 Aligned_cols=74 Identities=15% Similarity=0.161 Sum_probs=43.2
Q ss_pred CeeEEEecccCccccchHHHHHHhhcc--C---------CC----CccEEEEeeeee-eCCcccccccCCccCHHHHHHh
Q 012397 236 KFDIHGGGIDLIFPHHENEIAQSCAAC--Q---------DS----NVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITER 299 (464)
Q Consensus 236 ~~~i~~~G~D~~~~h~~~~~a~~~a~~--~---------~~----~~~~~~~~~~v~-~~G~KmSks~gn~i~~~dll~~ 299 (464)
.++++++|.|+ .+|.....-...-.+ . .| .+.+.+++.++. ++|+|||||.||.|++.| +.
T Consensus 232 ~~~i~~gG~DQ-~~ni~~grdlarrfn~~~~~~~~~~~~~p~l~~~~~~~l~~pll~~ldG~KMSKS~~naI~L~d--~~ 308 (392)
T 1y42_X 232 GVQMQIGGSDQ-YGNIISGLEVVKAARESEPDPQERKYVTPKTALDECVGFTVPLLTDSSGAKFGKSAGNAIWLDP--YQ 308 (392)
T ss_dssp CEEEEEECTTC-HHHHHHHHHHHHHHHHHCCCHHHHHHHSCCSGGGSCEEEECCCCBCTTCCBTTBCSSSBCBSST--TT
T ss_pred CccEEecCcch-HhHHHHHHHHHHHHhhhccccccccccccccccCCccccccccCcCCchhhccCCCCCeeeccC--CC
Confidence 58999999997 334432222111110 0 01 123335555655 399999999999998877 33
Q ss_pred cCchhHHHHHhhc
Q 012397 300 YHPLALRHFLISA 312 (464)
Q Consensus 300 ~~~dalR~~ll~~ 312 (464)
-+|+.++=++.+.
T Consensus 309 tsp~~i~qki~~~ 321 (392)
T 1y42_X 309 TSVFDFYGYFVRR 321 (392)
T ss_dssp SCHHHHHHHHHTC
T ss_pred CCHHHHHHHHHcC
Confidence 4555555555543
No 59
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=95.92 E-value=0.0033 Score=61.08 Aligned_cols=72 Identities=17% Similarity=0.183 Sum_probs=46.3
Q ss_pred CeeEEEecccCccccchHHHHHHhhccCCCCccEEEEeeeeee-CCcccccccCCccCHHHHHHhcCchhHHHHHhhc
Q 012397 236 KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTN-NNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 312 (464)
Q Consensus 236 ~~~i~~~G~D~~~~h~~~~~a~~~a~~~~~~~~~~~~~~~v~~-~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~ 312 (464)
..++.++|.|+. +|.....-.....+..++. .++...+.- +|+|||||.||.|++.| +..+++.++=.+.+.
T Consensus 191 ~~~v~~gG~DQ~-~~i~l~rdla~r~n~~~~~--~l~~pll~gldG~KMSKS~~n~I~L~d--~~tsp~~~~~ki~~~ 263 (322)
T 2yxn_A 191 GVVLCIGGSDQW-GNITSGIDLTRRLHQNQVF--GLTVPLITKADGTKFGKTEGGAVWLDP--KKTSPYKFYQFWINT 263 (322)
T ss_dssp CEEEEEECTTCH-HHHHHHHHHHHHHHCCCCE--EEECCCCBCTTSCBTTEETTEECBSST--TTSCHHHHHHHHHTC
T ss_pred CceEEecCchhH-HHHHHHHHHHHHhCCCCce--eeccCccCCCCcccccCCCCCeeeccC--CCCCHHHHHHHHhCC
Confidence 588999999964 2332222222223333322 233445543 89999999999999988 677788887666653
No 60
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=95.83 E-value=0.006 Score=61.55 Aligned_cols=69 Identities=23% Similarity=0.196 Sum_probs=44.2
Q ss_pred CeeEEEecccCccccchHHHHHHhhccCCCCccEEEEeeeee-eCCc-ccccccCCccCHHHHHHhcCchhHHHHHhhc
Q 012397 236 KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNE-KMSKSLGNFFTIRQITERYHPLALRHFLISA 312 (464)
Q Consensus 236 ~~~i~~~G~D~~~~h~~~~~a~~~a~~~~~~~~~~~~~~~v~-~~G~-KmSks~gn~i~~~dll~~~~~dalR~~ll~~ 312 (464)
..+++++|.|+. +|.....-.....+..++ +.+++.++. ++|. |||||.||.|++.| +|+.++=++.+.
T Consensus 187 ~~~l~~gG~DQ~-~ni~l~rdlarr~~~~~~--~~lt~pll~gldG~~KMSKS~~n~I~L~d-----sp~~i~~Ki~~~ 257 (432)
T 1h3f_A 187 RADVEMGGTDQR-FNLLVGREVQRAYGQSPQ--VCFLMPLLVGLDGREKMSKSLDNYIGLTE-----PPEAMFKKLMRV 257 (432)
T ss_dssp TCSEEEEEGGGH-HHHHHHHHHHHHTTCCCC--EEEEECCCBCTTSSSBCCGGGTCCCBTTS-----CHHHHHHHHHTS
T ss_pred CccEEEechHHH-HHHHHHHHHHHHhCCCCc--eEeecccccCCCCccccCcCCCCeeCCCC-----CHHHHHHHHhCC
Confidence 488999999975 344333333333333332 234555654 3896 99999999999877 666666666553
No 61
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=95.76 E-value=0.013 Score=58.91 Aligned_cols=57 Identities=19% Similarity=0.085 Sum_probs=36.3
Q ss_pred CeeEEEecccCccccchHHHHHHhhc-cCCCCccEEEEeeeee-eCCcccccccCCccCHHH
Q 012397 236 KFDIHGGGIDLIFPHHENEIAQSCAA-CQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQ 295 (464)
Q Consensus 236 ~~~i~~~G~D~~~~h~~~~~a~~~a~-~~~~~~~~~~~~~~v~-~~G~KmSks~gn~i~~~d 295 (464)
.++++++|.|+.. |.....-..... +..++. .++..++. ++|+|||||.||.|++.|
T Consensus 186 ~~~i~~gG~DQ~~-ni~~grdla~r~~~~~~~~--~l~~pll~~ldG~KMSKS~~naI~L~d 244 (420)
T 1jil_A 186 NCKIQVGGSDQWG-NITSGIELMRRMYGQTDAY--GLTIPLVTKSDGKKFGKSESGAVWLDA 244 (420)
T ss_dssp CEEEEEEEGGGHH-HHHHHHHHHHHHHCCCCCE--EEEECCCBCTTSCBTTBCSSSBCBSST
T ss_pred CCcEEeccHHHHH-HHHHHHHHHHHhcCCCCee--EeecccccCCccccccCCCCCeEecCC
Confidence 5899999999642 332222222333 333322 24445554 399999999999998877
No 62
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=95.61 E-value=0.0097 Score=58.54 Aligned_cols=72 Identities=17% Similarity=0.229 Sum_probs=34.6
Q ss_pred CeeEEEecccCccccchHHHHHHhhccCCCCccEEEEeeeee-eCCcccccccCCccCHHHHHHhcCchhHHHHHhhc
Q 012397 236 KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 312 (464)
Q Consensus 236 ~~~i~~~G~D~~~~h~~~~~a~~~a~~~~~~~~~~~~~~~v~-~~G~KmSks~gn~i~~~dll~~~~~dalR~~ll~~ 312 (464)
.++++++|.|+. +|.....-.....+..++. .++..++. ++|+|||||.||.|++.| +.-+|+.++=.+.+.
T Consensus 210 ~~~i~p~G~DQ~-~~i~l~rdla~r~n~~~~~--~l~~pll~~ldG~KMSKS~~naI~L~d--~~tsp~~i~~ki~~~ 282 (356)
T 2pid_A 210 GCRVQLGGSDQL-GNIMSGYEFINKLTGEDVF--GITVPLITSTTGAKLGKSAGNAVWLNR--DKTSPFELYQFFVRQ 282 (356)
T ss_dssp CCCEEEEEGGGH-HHHHHHHHHHHHHSSCCCE--EEEECCCC-------------CCBSST--TTSCHHHHHHHHHTC
T ss_pred CCcEEeccHHHH-HHHHHHHHHHHHhCCCCcc--ccccccccCCCcccccCCCCCeeeccC--CCCCHHHHHHHHHcC
Confidence 589999999964 2332222222223333332 24445554 499999999999999887 456777777766663
No 63
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=95.54 E-value=0.012 Score=59.24 Aligned_cols=72 Identities=15% Similarity=0.126 Sum_probs=44.6
Q ss_pred CeeEEEecccCccccchHHHHHHhhccCCCCccEEEEeeeee-eCCcccccccCC-ccCHHHHHHhcCchhHHHHHhhc
Q 012397 236 KFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGN-FFTIRQITERYHPLALRHFLISA 312 (464)
Q Consensus 236 ~~~i~~~G~D~~~~h~~~~~a~~~a~~~~~~~~~~~~~~~v~-~~G~KmSks~gn-~i~~~dll~~~~~dalR~~ll~~ 312 (464)
.++++++|.|+.. |.....-.....+..++. .++..++. .+|+|||||.|| .|++.| +.-+|+.++=++.+.
T Consensus 187 ~~~i~~gG~DQ~~-ni~lgrdlarr~~~~~~~--~l~~plL~~ldG~KMSKS~~nsaI~L~d--~~tsp~~i~qki~~~ 260 (432)
T 2jan_A 187 GCTLQIGGADQWG-NIIAGVRLVRQKLGATVH--ALTVPLVTAADGTKFGKSTGGGSLWLDP--QMTSPYAWYQYFVNT 260 (432)
T ss_dssp CCCEEEECSTTHH-HHHHHHHHHHHHHCCCCE--EEECCCCBCTTSCBTTBCSSSCBCBSST--TTSCHHHHHHHHHTC
T ss_pred CCcEEeccHHHHH-HHHHHHHHHHHhCCCCcc--ccccccccCCCcCcCCCCCCCCeEEccC--CCCCHHHHHHHHhcC
Confidence 5899999999642 332222222223343332 24445554 399999999999 998887 455666666565553
No 64
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=95.45 E-value=0.0092 Score=59.90 Aligned_cols=70 Identities=16% Similarity=0.145 Sum_probs=40.7
Q ss_pred CeeEEEecccCccccchHHHHHHhhc-cCCCCccEEEEeeeee-eCCcccccccCCccCHHHHHHhcCchhHHHHHh
Q 012397 236 KFDIHGGGIDLIFPHHENEIAQSCAA-CQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITERYHPLALRHFLI 310 (464)
Q Consensus 236 ~~~i~~~G~D~~~~h~~~~~a~~~a~-~~~~~~~~~~~~~~v~-~~G~KmSks~gn~i~~~dll~~~~~dalR~~ll 310 (464)
.++++++|.|+.. |.....-..... +..++. .++..++. .+|+|||||.||.|++.| +.-+|+.++=++.
T Consensus 185 ~~~i~~gG~DQ~~-ni~lgrdlarr~~~~~~~~--~lt~pll~~ldG~KMSKS~~naI~L~d--~~tsp~~i~qki~ 256 (419)
T 2ts1_A 185 GCRLQIGGSDQWG-NITAGLELIRKTKGEARAF--GLTIPLVTKADGTKFGKTESGTIWLDK--EKTSPYEFYQFWI 256 (419)
T ss_dssp CEEEEEEEGGGHH-HHHHHHHHHHHHHC--CCE--EEEECCCCCTTSCCTTCCSSCCCBSST--TTSCHHHHHHHHH
T ss_pred CCcEEeccHHHHH-HHHHHHHHHHHhcCCCCee--ecccccccCCCcccccCCCCCeEecCC--CCCCHHHHHHHHh
Confidence 5899999999642 332222222233 333322 24445554 399999999999998877 3334444444443
No 65
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=93.14 E-value=0.027 Score=55.27 Aligned_cols=72 Identities=15% Similarity=0.045 Sum_probs=41.7
Q ss_pred eEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q 012397 41 GMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADL 120 (464)
Q Consensus 41 ~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l 120 (464)
..+.||--|+|.|||||...++.. +.+ +... +++.+ .-.|.|+.-. . +.+++++. ++...+..++.++
T Consensus 23 ~~vysG~~PTG~lHLGn~~g~l~~--~~~-lQ~~-~~~~~-~IaD~ha~~~--~----~~~~e~i~-~~~~~~~~~~la~ 90 (351)
T 1yi8_B 23 PRVLTGDRPTGALHLGHLAGSLQN--RVR-LQDE-AELFV-LLADVQALTD--H----FDRPEQVR-ENVLAVALDYLAA 90 (351)
T ss_dssp SEEEEEECCSSCCBHHHHHHTHHH--HHH-HTSS-SEEEE-EECHHHHHHH--H----TTCHHHHH-HHHHHHHHHHHHH
T ss_pred cEEEEeeCCCCCccHHHHHHHHHH--HHH-HHHh-CCeEE-EEecchhhcC--C----CCCHHHHH-HHHHHHHHHHHHh
Confidence 345567888899999998766421 112 2223 77743 3344443211 1 34555443 4555677788889
Q ss_pred CCCC
Q 012397 121 QCLP 124 (464)
Q Consensus 121 gi~~ 124 (464)
|+.+
T Consensus 91 Gldp 94 (351)
T 1yi8_B 91 GLDP 94 (351)
T ss_dssp TCCT
T ss_pred CCCh
Confidence 9874
No 66
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=92.26 E-value=0.2 Score=49.44 Aligned_cols=77 Identities=18% Similarity=0.108 Sum_probs=49.2
Q ss_pred CCcceEEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 012397 37 RGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVD 116 (464)
Q Consensus 37 ~~~~~v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 116 (464)
.|+...+.+|--|+|.|||||.-.+. -.+++...|+++.+. -.|.|.. .-...+..+..+.+...+..+
T Consensus 67 ~gk~~~v~sG~~PTG~lHLGhyv~~~----~~~~lq~~~~~~~~~-IaD~ha~------t~~~~~~~e~~r~~~~~~~~~ 135 (372)
T 3a04_A 67 RGERVAVLTGFMPSGKFHFGHKLTVD----QLIYLQKNGFKVFVA-IADAEAF------AVRRIGREEAVRIAVEEYIAN 135 (372)
T ss_dssp TTCCCEEEEEECCCSCCBHHHHHHHH----HHHHHHHTTCEEEEE-ECHHHHH------HTTCCCHHHHHHHHHHTTHHH
T ss_pred cCCCCEEEeCcCCCcHhHHHHHHHHH----HHHHHHhCCCeEEEE-Eecchhh------ccCCCCCHHHHHHHHHHHHHH
Confidence 46667777889999999999954432 344555679998643 3454431 111223344455566667777
Q ss_pred HHhcCCCC
Q 012397 117 MADLQCLP 124 (464)
Q Consensus 117 l~~lgi~~ 124 (464)
+-.+|+.+
T Consensus 136 ~lA~GlDP 143 (372)
T 3a04_A 136 MIALGLDP 143 (372)
T ss_dssp HHHHTCCT
T ss_pred HHHcCCCh
Confidence 88889975
No 67
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=92.14 E-value=0.12 Score=50.63 Aligned_cols=81 Identities=15% Similarity=0.137 Sum_probs=45.6
Q ss_pred EEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q 012397 42 MYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQ 121 (464)
Q Consensus 42 v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lg 121 (464)
.+.||--|+|.|||||...++.-- .+ +.. |+++.+.- .|.|+.-. ..+++++ ..+...+..++.+.|
T Consensus 6 ~i~sG~~PTG~lHLGn~vg~l~~~--~~-lQ~-~~~~~~~I-aD~ha~~~-------~~d~~~i-~~~~~~~~~~~lA~G 72 (348)
T 2yy5_A 6 RALTGIQASGKQHLGNYLGVMQSL--IE-LQE-QCQLFVFV-ADLHSITV-------DFQPQAL-KQNNFDLVRTLLAVG 72 (348)
T ss_dssp EEEEEECCCTTCBHHHHHHTGGGH--HH-HHH-HSEEEEEE-CHHHHTTS-------CCCHHHH-HHHHHHHHHHHHHTT
T ss_pred EEEEeeCCCCcccHHHHHHHHHHH--HH-HHh-CCcEEEEE-cChhhccC-------CCCHHHH-HHHHHHHHHHHHHhC
Confidence 556778888999999977665222 12 334 78876443 22222100 0344433 335566777888899
Q ss_pred CCCCC-CCCCcchhH
Q 012397 122 CLPPT-YQPRVSDHM 135 (464)
Q Consensus 122 i~~~~-~~~r~s~~~ 135 (464)
+.+.- .+...|+..
T Consensus 73 ldp~k~~if~qS~~~ 87 (348)
T 2yy5_A 73 LDPQKACLFLQSDLL 87 (348)
T ss_dssp CCTTTEEEEEGGGCH
T ss_pred CChhHeEEEECCccc
Confidence 97421 344445443
No 68
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=90.32 E-value=0.16 Score=51.08 Aligned_cols=76 Identities=9% Similarity=-0.044 Sum_probs=44.8
Q ss_pred CcceEEEeCCCCC-CcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 012397 38 GKVGMYVCGVTAY-DLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVD 116 (464)
Q Consensus 38 ~~~~v~~~~P~p~-G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 116 (464)
++...+.||--|+ |.|||||.-+++ .+.++++..|+.+.+.-+=. ++ .+.. ..++++ +.++...+..+
T Consensus 106 ~~~~~vy~G~dPTag~LHLGh~v~~~---~~~~lQ~~~G~~~iilIgD~-ta--~igd----~lt~e~-i~~n~~~~~~~ 174 (437)
T 1r6u_A 106 KKPFYLYTGRGPSSEAMHVGHLIPFI---FTKWLQDVFNVPLVIQMTDD-EK--YLWK----DLTLDQ-AYGDAVENAKD 174 (437)
T ss_dssp TCCEEEEEEECCCSSCCBHHHHHHHH---HHHHHHHHHTCCEEEEECHH-HH--HHHS----SCCHHH-HHHHHHHHHHH
T ss_pred CCCcEEEEcccCCCCCccHHHHHHHH---HHHHHHHHhCCcEEEEEecc-ee--eecC----CCCHHH-HHHHHHHHHHH
Confidence 4556677888999 999999976554 23333333899876554321 11 1111 345544 33444455667
Q ss_pred HHhcCCCC
Q 012397 117 MADLQCLP 124 (464)
Q Consensus 117 l~~lgi~~ 124 (464)
+-.+|+.+
T Consensus 175 ~lA~GlDp 182 (437)
T 1r6u_A 175 IIACGFDI 182 (437)
T ss_dssp HHTTTCCG
T ss_pred HHHhCCCc
Confidence 77778763
No 69
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=87.10 E-value=0.33 Score=48.94 Aligned_cols=77 Identities=19% Similarity=0.227 Sum_probs=46.1
Q ss_pred CcceEEEeCCCCC-CcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHH
Q 012397 38 GKVGMYVCGVTAY-DLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVD 116 (464)
Q Consensus 38 ~~~~v~~~~P~p~-G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 116 (464)
++...+.||--|+ |.|||||.-.+ -.+.++++.-|..+.+. +.|... .. .+...+++++ .++...+.++
T Consensus 89 g~p~~vytG~dPTagsLHLGH~v~~---~~l~~lQ~~~g~~v~I~--IgD~~a-~~---~r~~lt~E~I-~~n~~~~~~~ 158 (451)
T 3foc_A 89 GHPIYIYTGRGPSSGALHLGHLLPF---IFTKYLQDAFKCYVVIQ--ITDDEK-FL---RNRSLSYAEV-DSYTRENIKD 158 (451)
T ss_dssp TCCEEEEEEECCCSSCCBHHHHHHH---HHHHHHHHHHTCEEEEE--ECHHHH-HH---HCTTCCHHHH-HHHHHHHHHH
T ss_pred CCCeEEEecCCCCCCCccHHHHHHH---HHHHHHHHccCceEEEE--eeCcHH-hh---cccCCCHHHH-HHHHHHHHHH
Confidence 4556777889999 89999995443 33444444447777664 222221 11 1224565544 4455577778
Q ss_pred HHhcCCCC
Q 012397 117 MADLQCLP 124 (464)
Q Consensus 117 l~~lgi~~ 124 (464)
+-.+|+.+
T Consensus 159 ~lA~GlDp 166 (451)
T 3foc_A 159 IIACGFDP 166 (451)
T ss_dssp HHTTTCCG
T ss_pred HHHcCCCC
Confidence 88888863
No 70
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=85.84 E-value=2 Score=43.23 Aligned_cols=53 Identities=19% Similarity=0.175 Sum_probs=30.1
Q ss_pred EEEecccCccccchHHHHHHhhccC-CCCccEEEEeeeee-eCCc--ccccccCC-ccCHHH
Q 012397 239 IHGGGIDLIFPHHENEIAQSCAACQ-DSNVSYWMHNGHVT-NNNE--KMSKSLGN-FFTIRQ 295 (464)
Q Consensus 239 i~~~G~D~~~~h~~~~~a~~~a~~~-~~~~~~~~~~~~v~-~~G~--KmSks~gn-~i~~~d 295 (464)
+.+.|.|+.+ |. ..++-.+-.. .+.+.+ +++.++. ++|. |||||.+| .|.+.|
T Consensus 290 ~VPvG~DQ~~-hl--el~Rdia~rfn~~~p~~-~~~~~l~gLdG~~~KMSKS~~ns~I~l~D 347 (451)
T 3foc_A 290 LIASGIEQDP-YF--RLARDLAPRMGHPKNAY-LLGKFLPGLQGSGTKMSASDPNSAIYLTD 347 (451)
T ss_dssp EEEECTTTHH-HH--HHHHHHTTTTTSCCCEE-EEECCCCBTTBTTCCCCTTCGGGSCBTTC
T ss_pred eeeeecchHH-HH--HHHHHHHHHhCCCCCee-ecCCcccCCCCCCCccCCCCCCCeeeecC
Confidence 7788999653 22 2344443322 222323 4455554 3764 99999988 676543
No 71
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=85.09 E-value=1.1 Score=44.45 Aligned_cols=39 Identities=13% Similarity=-0.010 Sum_probs=26.9
Q ss_pred ceEEEeCCCCCCc-CCcccchhHHHHHHHHHHHHHCCCeEEEec
Q 012397 40 VGMYVCGVTAYDL-SHLGHARAAVSFDLLYRYLEHLKCEVTYVR 82 (464)
Q Consensus 40 ~~v~~~~P~p~G~-lHiGHar~~l~~D~laR~lr~~G~~V~~i~ 82 (464)
...+.||--|+|+ |||||.-.. -.+.+++ ..|+++.+.-
T Consensus 64 ~~~vy~G~dPTg~sLHlGhlv~l---~~l~~lQ-~~G~~~~~lI 103 (392)
T 1y42_X 64 RIGAYVGIDPTAPSLHVGHLLPL---MPLFWMY-LEGYKAFTLI 103 (392)
T ss_dssp CCEEEEEECCCSSSCBGGGHHHH---HHHHHHH-HHTCEEEEEE
T ss_pred CCEEEEeecCCCCCccHHHHHHH---HHHHHHH-HcCCcEEEEE
Confidence 3456678889999 999995532 2344444 4699988664
No 72
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=83.82 E-value=0.55 Score=45.96 Aligned_cols=40 Identities=23% Similarity=0.260 Sum_probs=27.0
Q ss_pred cceEEEeCCCCCCc-CCcccchhHHHHHHHHHHHHHCCCeEEEec
Q 012397 39 KVGMYVCGVTAYDL-SHLGHARAAVSFDLLYRYLEHLKCEVTYVR 82 (464)
Q Consensus 39 ~~~v~~~~P~p~G~-lHiGHar~~l~~D~laR~lr~~G~~V~~i~ 82 (464)
+...+.||--|+|+ |||||+.... .+.+ +...|+++.+.-
T Consensus 45 ~~~~vy~G~~PTg~sLHLGhl~~l~---~~~~-lQ~~G~~~~~lI 85 (356)
T 2pid_A 45 FPQTIYCGFDPTADSLHVGHLLALL---GLFH-LQRAGHNVIALV 85 (356)
T ss_dssp -CCEEEEEECCSSSSCBHHHHHHHH---HHHH-HHHTTCEEEEEE
T ss_pred CCCEEEEeecCCCCcccHHHHHHHH---HHHH-HHHCCCcEEEEE
Confidence 33566788889997 9999955333 2444 445799987664
No 73
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=83.39 E-value=0.64 Score=46.65 Aligned_cols=40 Identities=15% Similarity=0.108 Sum_probs=27.5
Q ss_pred ceEEEeCCCCCCc-CCcccchhHHHHHHHHHHHHHCCCeEEEecC
Q 012397 40 VGMYVCGVTAYDL-SHLGHARAAVSFDLLYRYLEHLKCEVTYVRN 83 (464)
Q Consensus 40 ~~v~~~~P~p~G~-lHiGHar~~l~~D~laR~lr~~G~~V~~i~~ 83 (464)
...+.||--|+|+ |||||+.... .+.+ +...|+++.++-|
T Consensus 32 ~~~iy~G~dPTg~sLHLGhlv~l~---~l~~-lQ~~G~~~i~lIg 72 (432)
T 2jan_A 32 PMTVYAGFDPTAPSLHAGHLVPLL---TLRR-FQRAGHRPIVLAG 72 (432)
T ss_dssp CCEEEEEECCSSSSCBGGGHHHHH---HHHH-HHHTTCEEEEEEC
T ss_pred CCEEEEeeCCCCCCcCHHHHHHHH---HHHH-HHHCCCcEEEEEc
Confidence 3456678889996 9999955433 3444 4457999887653
No 74
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=83.33 E-value=0.81 Score=44.68 Aligned_cols=70 Identities=16% Similarity=0.067 Sum_probs=40.9
Q ss_pred CeeEEEecccCccccchHHHHHHhhc---cC---CCCccEEEEeeeee-eCCc-ccccccCCccCHHHHHHhcCchhHHH
Q 012397 236 KFDIHGGGIDLIFPHHENEIAQSCAA---CQ---DSNVSYWMHNGHVT-NNNE-KMSKSLGNFFTIRQITERYHPLALRH 307 (464)
Q Consensus 236 ~~~i~~~G~D~~~~h~~~~~a~~~a~---~~---~~~~~~~~~~~~v~-~~G~-KmSks~gn~i~~~dll~~~~~dalR~ 307 (464)
..+++++|.|+.. |.....-..... .+ +.|..++.++..+. ++|+ |||||.||.|++.| +++.++=
T Consensus 162 ~~~~vpvG~DQ~~-hi~l~rdia~r~n~~yg~~f~~P~~~~~~~~~l~~ldG~~KMSKS~~n~I~L~d-----~p~~i~~ 235 (351)
T 1yi8_B 162 GATLVPVGDDQLP-MLEQTREIVRRFNALYAPVLAEPQAQLSRVPRLPGLDGQAKMSKSLGNAIALGD-----SADEVAR 235 (351)
T ss_dssp TCSEEEECGGGHH-HHHHHHHHHHHHHHHTCSCSCCCEEEECSSCSCCCTTSSSCCCTTTTCCCBTTC-----CHHHHHH
T ss_pred CCCEEEecCCcHH-HHHHHHHHHHHHHhhcccccCCCeeeeecCccccCCCCccccCCCCCCeecCCC-----CHHHHHH
Confidence 5789999999653 332222111111 12 22332221233443 3887 99999999998876 4677776
Q ss_pred HHhh
Q 012397 308 FLIS 311 (464)
Q Consensus 308 ~ll~ 311 (464)
.+.+
T Consensus 236 Ki~~ 239 (351)
T 1yi8_B 236 KVMG 239 (351)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 6665
No 75
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=81.42 E-value=2 Score=43.05 Aligned_cols=55 Identities=16% Similarity=0.031 Sum_probs=32.6
Q ss_pred CeeEEEecccCccccchHHHHHHhh--ccCCCCccEEEEeeeee-eCC--cccccccCC-ccCHHH
Q 012397 236 KFDIHGGGIDLIFPHHENEIAQSCA--ACQDSNVSYWMHNGHVT-NNN--EKMSKSLGN-FFTIRQ 295 (464)
Q Consensus 236 ~~~i~~~G~D~~~~h~~~~~a~~~a--~~~~~~~~~~~~~~~v~-~~G--~KmSks~gn-~i~~~d 295 (464)
..++..+|.|+.. |. ..++-.+ .+.+.|. . +++.++. ++| +|||||.+| .|++.|
T Consensus 256 ~~~lVpvG~DQ~~-~i--~l~Rdla~r~~~~~P~-~-l~~pll~gLdG~~~KMSKS~~nsaI~L~D 316 (437)
T 1r6u_A 256 IQCLIPCAIDQDP-YF--RMTRDVAPRIGYPKPA-L-LHSTFFPALQGAQTKMSASDPNSSIFLTD 316 (437)
T ss_dssp CEEEEEEEGGGHH-HH--HHHHHHGGGGTCCCCE-E-EEECCCEETTEEEEECCTTSSSSCCBTTC
T ss_pred CceEEEeehhhHH-HH--HHHHHHHHHhCCCCce-E-eecccccCCCCCccccCCCCCCCeeeccC
Confidence 3466668999642 22 2233322 2323332 3 4455665 488 799999999 798765
No 76
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=79.39 E-value=1.1 Score=44.84 Aligned_cols=39 Identities=13% Similarity=0.137 Sum_probs=26.8
Q ss_pred eEEEeCCCCCCc-CCcccchhHHHHHHHHHHHHHCCCeEEEecC
Q 012397 41 GMYVCGVTAYDL-SHLGHARAAVSFDLLYRYLEHLKCEVTYVRN 83 (464)
Q Consensus 41 ~v~~~~P~p~G~-lHiGHar~~l~~D~laR~lr~~G~~V~~i~~ 83 (464)
..+.||--|+|+ |||||.-.. -.+. .+...|+++.+.-|
T Consensus 31 ~~iy~G~dPTg~sLHlGh~v~l---~~l~-~lQ~~G~~~i~lIg 70 (419)
T 2ts1_A 31 VTLYCGFDPTADSLHIGHLATI---LTMR-RFQQAGHRPIALVG 70 (419)
T ss_dssp CEEEEEECCSSSSCBGGGHHHH---HHHH-HHHHTTCEEEEEEC
T ss_pred CEEEEeeCCCCCCccHHHHHHH---HHHH-HHHHCCCcEEEEEc
Confidence 456678889999 999995432 2344 44567999887643
No 77
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=78.42 E-value=0.94 Score=43.66 Aligned_cols=40 Identities=20% Similarity=0.182 Sum_probs=27.2
Q ss_pred ceEEEeCCCCCCc-CCcccchhHHHHHHHHHHHHHCCCeEEEecC
Q 012397 40 VGMYVCGVTAYDL-SHLGHARAAVSFDLLYRYLEHLKCEVTYVRN 83 (464)
Q Consensus 40 ~~v~~~~P~p~G~-lHiGHar~~l~~D~laR~lr~~G~~V~~i~~ 83 (464)
...+.||--|+|+ |||||.-. --.+. .+...|+++.+.-+
T Consensus 33 ~~~vy~G~~PTg~slHlGh~l~---l~~~~-~lQ~~g~~~~~~i~ 73 (322)
T 2yxn_A 33 PIALVCGFDPTADSLHLGHLVP---LLCLK-RFQQAGHKPVALVG 73 (322)
T ss_dssp CCEEEEEECCSSSSCBHHHHHH---HHHHH-HHHHTTCEEEEEEC
T ss_pred CCEEEEeecCCCCcccHHHHHH---HHHHH-HHHHcCCcEEEEEc
Confidence 3456788889999 99999543 22333 44567999876654
No 78
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=76.99 E-value=1.1 Score=44.93 Aligned_cols=40 Identities=15% Similarity=0.096 Sum_probs=27.3
Q ss_pred ceEEEeCCCCCCc-CCcccchhHHHHHHHHHHHHHCCCeEEEecC
Q 012397 40 VGMYVCGVTAYDL-SHLGHARAAVSFDLLYRYLEHLKCEVTYVRN 83 (464)
Q Consensus 40 ~~v~~~~P~p~G~-lHiGHar~~l~~D~laR~lr~~G~~V~~i~~ 83 (464)
...+.||--|+|+ |||||.-.. -.+. .+...|+++.+.-|
T Consensus 32 ~~~iy~G~dPTg~sLHlGh~v~l---~~~~-~lQ~~G~~~~~lIg 72 (420)
T 1jil_A 32 QVTLYCGADPTADSLHIGHLLPF---LTLR-RFQEHGHRPIVLIG 72 (420)
T ss_dssp CCEEEEEECCSSSSCBHHHHHHH---HHHH-HHHHTTCEEEEEEC
T ss_pred CCEEEEeeCCCCCCccHHHHHHH---HHHH-HHHHCCCcEEEEEc
Confidence 3456678889999 999995432 2344 44457999887653
No 79
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=75.33 E-value=2.2 Score=41.35 Aligned_cols=70 Identities=11% Similarity=0.118 Sum_probs=42.3
Q ss_pred EEEeCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcC
Q 012397 42 MYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQ 121 (464)
Q Consensus 42 v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lg 121 (464)
.+.+|--|+|+|||||.-.++.- +.+++. |+++.+. -.|.|..-. ..++++ ..++...+..++...|
T Consensus 8 ~v~sG~~PTG~lHLGhy~g~l~~--~~~lQ~--~~~~~~~-iaD~ha~~~-------~~~~~~-~~~~~~~~~~~~lA~G 74 (341)
T 3sz3_A 8 IVLSGVQPSGELSIGNYLGALRQ--WQQMQD--DYDCQYC-VVDLHAITV-------RQDPQA-LHEATLDALAICLAVG 74 (341)
T ss_dssp EEEEEECSSSCCBHHHHHHTGGG--HHHHHH--HSEEEEE-ECHHHHTTS-------CCCHHH-HHHHHHHHHHHHHHTT
T ss_pred EEEeCcCCCCcccHHHHHHHHHH--HHHHHh--cCeEEEE-EecceeEcC-------CCCHHH-HHHHHHHHHHHHHHcC
Confidence 45677888999999996655421 233343 5776544 334443210 235533 4445667788888899
Q ss_pred CCC
Q 012397 122 CLP 124 (464)
Q Consensus 122 i~~ 124 (464)
+.+
T Consensus 75 lDp 77 (341)
T 3sz3_A 75 VDP 77 (341)
T ss_dssp CCT
T ss_pred CCh
Confidence 974
No 80
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=74.69 E-value=2.1 Score=42.03 Aligned_cols=59 Identities=15% Similarity=0.090 Sum_probs=32.1
Q ss_pred CCCeeEEEecccCccccchHHHHHHhh--ccC--CCCccEEEEeeeee-eCCcccccccCC-ccCHHH
Q 012397 234 SSKFDIHGGGIDLIFPHHENEIAQSCA--ACQ--DSNVSYWMHNGHVT-NNNEKMSKSLGN-FFTIRQ 295 (464)
Q Consensus 234 ~~~~~i~~~G~D~~~~h~~~~~a~~~a--~~~--~~~~~~~~~~~~v~-~~G~KmSks~gn-~i~~~d 295 (464)
+....+.+.|.|+. +|.. .++-.| .+. ..+.....++.++. ++|.|||||..| .|.+.|
T Consensus 206 gy~a~~VPVG~DQ~-~hle--ltRdiA~rfn~~~~~~~P~~~~~~~~pgldG~KmS~S~~ns~I~l~D 270 (372)
T 3a04_A 206 GYRHVVVPVGADQD-PHLR--LTRDLADRMAGVVELERPASTYHKLQPGLDGRKMSSSRPDSTIFLTD 270 (372)
T ss_dssp CCCCEEEEEEGGGH-HHHH--HHHHHHHHTTTTSCCCCCEEEEECCCBCTTSSBCCTTSGGGSCBTTC
T ss_pred CccceecccchhhH-HHHH--HHHHHHHHhcCcccccChhhhhhcccCCCCCCccCCCCCCcccccCC
Confidence 34556888899965 3443 333333 221 11122224444543 389999999855 675543
No 81
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=73.30 E-value=2 Score=43.15 Aligned_cols=42 Identities=21% Similarity=0.281 Sum_probs=27.7
Q ss_pred CcceEEEeCCCCCCc-CCcccchhHHHHHHHHHHHHHCCCeEEEecC
Q 012397 38 GKVGMYVCGVTAYDL-SHLGHARAAVSFDLLYRYLEHLKCEVTYVRN 83 (464)
Q Consensus 38 ~~~~v~~~~P~p~G~-lHiGHar~~l~~D~laR~lr~~G~~V~~i~~ 83 (464)
++...+.||--|+|+ |||||.-. --.+.+ +...|+++.+.-+
T Consensus 35 ~~~~~vy~G~dPTg~sLHlGh~v~---l~~l~~-lQ~~G~~~i~lIg 77 (432)
T 1h3f_A 35 GRPLTVKLGADPTRPDLHLGHAVV---LRKMRQ-FQELGHKVVLIIG 77 (432)
T ss_dssp CSCCEEEEEECTTCCSCBHHHHHH---HHHHHH-HHHTTCEEEEEEC
T ss_pred CCCcEEEEcccCCCCCCchhhHHH---HHHHHH-HHHCCCCEEEEEc
Confidence 444566678889985 99999543 233444 4457999876543
No 82
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=71.94 E-value=3.4 Score=40.06 Aligned_cols=69 Identities=10% Similarity=0.074 Sum_probs=41.2
Q ss_pred EEEeCCCCCCcCCcccchhHHHHHHHHHHHHH-CCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhc
Q 012397 42 MYVCGVTAYDLSHLGHARAAVSFDLLYRYLEH-LKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADL 120 (464)
Q Consensus 42 v~~~~P~p~G~lHiGHar~~l~~D~laR~lr~-~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l 120 (464)
++.+|--|+|.+||||.-.++ ..+.++ .++++.+. -.|.|..-. ..+++. ..++......++...
T Consensus 17 ~i~sG~~PTG~lHLGh~vg~l-----~~~~~lQ~~~~~~~~-iaD~hA~t~-------~~~~~~-~~~~~~~~~~~~lA~ 82 (346)
T 3n9i_A 17 IVFSGAQPSGELTIGNYMGAL-----RQWVQMQDDYDCIYC-IVDLHAITA-------RQDPAL-LRKRTLDTLALYLAC 82 (346)
T ss_dssp EEEEEECSCSCCBHHHHHHTH-----HHHHTTTTTSEEEEE-ECHHHHTTS-------CCCHHH-HHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCcccHHHHHHHH-----HHHHHHHhhCcEEEE-EecceeecC-------CCCHHH-HHHHHHHHHHHHHHc
Confidence 455778889999999965553 223222 36776544 335443210 234433 344556677788889
Q ss_pred CCCC
Q 012397 121 QCLP 124 (464)
Q Consensus 121 gi~~ 124 (464)
|+.+
T Consensus 83 GlDp 86 (346)
T 3n9i_A 83 GIDP 86 (346)
T ss_dssp TCCT
T ss_pred CCCc
Confidence 9974
No 83
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=70.53 E-value=8.3 Score=37.34 Aligned_cols=60 Identities=23% Similarity=0.136 Sum_probs=30.3
Q ss_pred CCeeEEEecccCccccchHH--HHHHhhc-cCCCC--ccEEEEe--eeee-e-CC-cccccccC---CccCHHH
Q 012397 235 SKFDIHGGGIDLIFPHHENE--IAQSCAA-CQDSN--VSYWMHN--GHVT-N-NN-EKMSKSLG---NFFTIRQ 295 (464)
Q Consensus 235 ~~~~i~~~G~D~~~~h~~~~--~a~~~a~-~~~~~--~~~~~~~--~~v~-~-~G-~KmSks~g---n~i~~~d 295 (464)
...++.++|.|+.. |+... ++.-... .++.+ +..+++. .++. + +| +|||||.+ |.|.+.|
T Consensus 151 ~~ad~vpvG~DQ~~-hleltRdia~rfn~~yg~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D 223 (346)
T 3n9i_A 151 YQTNQVPVGEDQKQ-HLELSRDIASRFNNLYGDIFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELLE 223 (346)
T ss_dssp TTCSEECCCGGGHH-HHHHHHHHHHHHHHHHSSCSCCCEECCCCCCCCCBCSSCTTSBCCTTCSCGGGCCBTTS
T ss_pred hCceEEEeccchHH-HHHHHHHHHHHhccccCCcccccchhccCCcccCccCCCCccccCCCCCCCCceecCCC
Confidence 35789999999753 33221 2221110 11111 1111211 1222 3 67 49999987 6787654
No 84
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=65.87 E-value=1.9 Score=41.93 Aligned_cols=74 Identities=18% Similarity=0.023 Sum_probs=40.0
Q ss_pred hcCCCeeEEEecccCccccchHHHHHHhhcc---CC--CCccEEEE--eeeee-eCC--cccccccCC---ccCHHHHHH
Q 012397 232 YLSSKFDIHGGGIDLIFPHHENEIAQSCAAC---QD--SNVSYWMH--NGHVT-NNN--EKMSKSLGN---FFTIRQITE 298 (464)
Q Consensus 232 ~~~~~~~i~~~G~D~~~~h~~~~~a~~~a~~---~~--~~~~~~~~--~~~v~-~~G--~KmSks~gn---~i~~~dll~ 298 (464)
.+-...+++++|.|+.. |.....-.....+ +. +.+..++. +..+. ++| +|||||.+| .|++.|
T Consensus 143 il~~~a~~vpvG~DQ~~-~lel~Rdia~r~n~~yg~~f~~P~~l~~~~~~~l~gL~g~~~KMSKS~~n~~~~I~L~D--- 218 (348)
T 2yy5_A 143 ILLYQPDIVPVGNDQKQ-HLELTRDLAQRIQKKFKLKLRLPQFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLDD--- 218 (348)
T ss_dssp HHTTCCSEEECCGGGHH-HHHHHHHHHHHHHHHHCCCCCCCEEECCTTTTTCBCSSCTTSBCCSSCSCGGGCCBTTC---
T ss_pred HHHhCccEEEecccHHH-HHHHHHHHHHHhhhhcccccCCCeeecccccccccCCCCcchhcCCCCCCCCceEeecC---
Confidence 33346899999999653 3322222122221 21 11222121 12333 367 899999999 898766
Q ss_pred hcCchhHHHHHhh
Q 012397 299 RYHPLALRHFLIS 311 (464)
Q Consensus 299 ~~~~dalR~~ll~ 311 (464)
+++.+|==+.+
T Consensus 219 --~~~~i~~KI~~ 229 (348)
T 2yy5_A 219 --PKEVVVKKIRQ 229 (348)
T ss_dssp --CHHHHHHHHHT
T ss_pred --CHHHHHHHHHh
Confidence 45555554444
No 85
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=63.45 E-value=3.7 Score=39.76 Aligned_cols=28 Identities=29% Similarity=0.330 Sum_probs=18.9
Q ss_pred CC-ccccccc---CCccCHHHHHHhcCchhHHHHHhh
Q 012397 279 NN-EKMSKSL---GNFFTIRQITERYHPLALRHFLIS 311 (464)
Q Consensus 279 ~G-~KmSks~---gn~i~~~dll~~~~~dalR~~ll~ 311 (464)
+| +|||||. +|.|.+.| +++.+|==+.+
T Consensus 197 dg~~KMSKS~~~~~~~I~L~D-----~p~~i~kKI~~ 228 (341)
T 3sz3_A 197 DATKKMSKSDDNRKNVITLLE-----DPKSIIKKINK 228 (341)
T ss_dssp EEEEECCTTCSCGGGCCBTTC-----CHHHHHHHHHT
T ss_pred CCCCccCCCCCCCCCeeecCC-----CHHHHHHHhhh
Confidence 57 6999999 78897655 44555544433
No 86
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=50.78 E-value=46 Score=35.27 Aligned_cols=77 Identities=9% Similarity=-0.093 Sum_probs=46.3
Q ss_pred CCCcCCcccchhHHHHHHHHHHHHH-CCCeEEEecCCccccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCCCC
Q 012397 49 AYDLSHLGHARAAVSFDLLYRYLEH-LKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTY 127 (464)
Q Consensus 49 p~G~lHiGHar~~l~~D~laR~lr~-~G~~V~~i~~~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~~~~ 127 (464)
++|.+||||+=...- ++..+++. .|++|.+.-+-+ +. . +. .+.|.+ .+-++.+...+.+.+..+|......
T Consensus 390 s~g~lHLGh~v~~~k--~l~~~~~~~~g~~v~ilIaD~-~A-~-i~--d~~g~~-~e~i~~~~~y~~~~~~alG~d~k~~ 461 (690)
T 3p0j_A 390 ALLKVPLDVAEGMIK--VTKDFIAAHPEGTVTLVLPDW-SA-V-AS--DEITGV-EKDISAALQVNCALLKAYGLPSSVK 461 (690)
T ss_dssp CCSSCBHHHHHHHHH--HHHHHHHHCSSCEEEEEECTT-HH-H-HT--TCTTCC-HHHHHHHHHHHHHHHHHHTCCTTSE
T ss_pred CCCCcccchHHHHHH--HHHHHHHHcCCCeEEEEEecc-hh-h-hC--CCCCCC-HHHHHHHHHHHHHHHHhcCCCcCeE
Confidence 779999999765532 25566666 588888765533 11 0 00 022445 3445556778888999999863234
Q ss_pred CCCcch
Q 012397 128 QPRVSD 133 (464)
Q Consensus 128 ~~r~s~ 133 (464)
+...|+
T Consensus 462 fv~~S~ 467 (690)
T 3p0j_A 462 IVTENE 467 (690)
T ss_dssp EEEHHH
T ss_pred EEECCc
Confidence 444443
No 87
>3p8c_E Probable protein brick1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=28.51 E-value=1.7e+02 Score=21.27 Aligned_cols=56 Identities=14% Similarity=0.165 Sum_probs=34.5
Q ss_pred HHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhcccCchhhhhhHHHHHHHHHHHHH
Q 012397 371 DEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVK 429 (464)
Q Consensus 371 ~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~ 429 (464)
.++.+.. ++-.+-..+..++..++..+|+|=..|+-- -..-+.|+..+.....+|+
T Consensus 10 ~~iq~DW-~nRe~ie~in~~I~~~v~FLN~F~~sce~K--La~ln~KL~~LEr~L~iLE 65 (75)
T 3p8c_E 10 REIHQDW-ANREYIEIITSSIKKIADFLNSFDMSCRSR--LATLNEKLTALERRIEYIE 65 (75)
T ss_dssp CHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 4566666 566677778888888899999997777620 0112334444444444443
No 88
>2zvi_A 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; methionine salvage pathway, amino-acid biosynthesis, isomerase, magnesium, metal- binding; 2.30A {Bacillus subtilis}
Probab=24.28 E-value=83 Score=31.14 Aligned_cols=67 Identities=7% Similarity=-0.042 Sum_probs=46.4
Q ss_pred eCCCCCCcCCcccchhHHHHHHHHHHHHHCCCeEEEecCCccccH--------H---HHHHHHHcCCChHHHHHHHHHHH
Q 012397 45 CGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDD--------K---IIRRANDLGENPLSLSNRYCQEY 113 (464)
Q Consensus 45 ~~P~p~G~lHiGHar~~l~~D~laR~lr~~G~~V~~i~~~dd~g~--------~---i~~~a~~~g~~~~~~~~~~~~~~ 113 (464)
+-|.|+|-+|.||+-.. ++..|.||.+..|-.-+|- . ....|..+|.+..+.+.+ +.+.
T Consensus 343 v~PV~SGGih~~~~p~l---------~~~~G~Dvvl~~GGG~~gHP~G~aaGa~A~R~A~eA~~~g~~l~~~A~~-~~eL 412 (425)
T 2zvi_A 343 TFAVPSAGIHPGMVPLL---------MRDFGIDHIINAGGGVHGHPNGAQGGGRAFRAIIDAVLEAQPIDEKAEQ-CKDL 412 (425)
T ss_dssp CEEEECSSCCGGGHHHH---------HHHHTTSBEEECGGGGGGSTTHHHHHHHHHHHHHHHHHTTCCHHHHHHH-CHHH
T ss_pred ceEeecCCcchhhHHHH---------HHHhCCceEEEcCccccCCCCCcHHHHHHHHHHHHHHHcCCChHHhhcc-CHHH
Confidence 45778899999996543 4677999999997666642 1 112233468888888876 6677
Q ss_pred HHHHHhcC
Q 012397 114 LVDMADLQ 121 (464)
Q Consensus 114 ~~~l~~lg 121 (464)
...|+..+
T Consensus 413 ~~Al~~w~ 420 (425)
T 2zvi_A 413 KLALDKWG 420 (425)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhC
Confidence 77666654
No 89
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=23.37 E-value=2.1e+02 Score=20.63 Aligned_cols=56 Identities=9% Similarity=0.061 Sum_probs=31.8
Q ss_pred HHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhcccCchhhhhhHHHHHHHHHHHHHH
Q 012397 372 EFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKE 430 (464)
Q Consensus 372 ~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~ 430 (464)
.+.+.. ++-++-..+...+..++..+|+|=..|+-. -..-..|+..+.....+|..
T Consensus 11 ~iq~DW-~nRe~ie~is~~I~~~v~FLN~F~~sce~K--La~ln~kL~~lE~~L~iLEA 66 (73)
T 3pp5_A 11 NIQKDW-EQREFIEDMSINIQKIVEFLNKFELSTRNK--LSDLNEKLTILDRQVDYLEA 66 (73)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 345555 444555666666777788888887777621 11223455555555555443
No 90
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A
Probab=21.55 E-value=4.3e+02 Score=23.52 Aligned_cols=85 Identities=9% Similarity=0.026 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhhhcccCchhh-hhhHHHHHHHHHHHHHHHHHhhc-cCC
Q 012397 362 AEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQ-QLSLIESLRKIENEVKEVLRILG-LLP 439 (464)
Q Consensus 362 l~~~l~~~~~~v~~~~~~~~~~~~al~~yl~~l~~~~n~~~~~~~~~~~~~~-~~~r~~~~~~~~~~l~~~l~lLg-i~p 439 (464)
+...|...+..-...+ ++-.+|.-+.. +..+...|+.|-...+| ++. ...++ ...+..|..-+.. + +.|
T Consensus 19 ~as~Ll~WI~~~~~~l-~~r~f~~sl~~-vq~~l~~f~~fr~~ekp---pk~~EK~~L---e~ll~~lqtklr~-~~~~p 89 (235)
T 2odv_A 19 LVLLLLQWMRHHTAAF-EERRFPSSFEE-IEILWSQFLKFKEMELP---AKEADKNRS---KGIYQSLEGAVQA-GQLKV 89 (235)
T ss_dssp HHHHHHHHHHHHHHHH-HCC-CCSSHHH-HHHHHHHHHHHHHHTHH---HHHHHHHHH---HHHHHHHHHHHHT-TSSCC
T ss_pred HHHHHHHHHHHHHHHH-hcCCCCCCHHH-HHHHHHHHHHHHhccCC---HHHHHHHHH---HHHHHHHHHHHHc-CCCCC
Confidence 4556677777777888 67788999999 99999999999877665 221 11222 3344444444442 5 554
Q ss_pred C-c----cHHHHHHHhhhhHh
Q 012397 440 P-G----AYSEVKTAFLVLLH 455 (464)
Q Consensus 440 ~-~----~~e~i~~~l~~~~~ 455 (464)
| + --++.|+.|..-.+
T Consensus 90 peg~~~~di~~~W~~Le~ae~ 110 (235)
T 2odv_A 90 PPGYHPLDVEKEWGKLHVAIL 110 (235)
T ss_dssp CTTCSHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHH
Confidence 4 2 13666887765443
No 91
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=20.36 E-value=50 Score=31.52 Aligned_cols=26 Identities=35% Similarity=0.393 Sum_probs=22.8
Q ss_pred cccchhHHHHHHHHHHHHHCCCeEEEecC
Q 012397 55 LGHARAAVSFDLLYRYLEHLKCEVTYVRN 83 (464)
Q Consensus 55 iGHar~~l~~D~laR~lr~~G~~V~~i~~ 83 (464)
.||+.+++ .|||.|+.+||+|.++++
T Consensus 33 ~GHv~P~l---~LA~~L~~rGh~Vt~~t~ 58 (400)
T 4amg_A 33 LSHILPTV---PLAQALRALGHEVRYATG 58 (400)
T ss_dssp HHHHGGGH---HHHHHHHHTTCEEEEEEC
T ss_pred hhHHHHHH---HHHHHHHHCCCEEEEEeC
Confidence 39999887 499999999999999875
Done!