RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 012397
(464 letters)
>gnl|CDD|178532 PLN02946, PLN02946, cysteine-tRNA ligase.
Length = 557
Score = 678 bits (1751), Expect = 0.0
Identities = 287/445 (64%), Positives = 348/445 (78%), Gaps = 10/445 (2%)
Query: 3 ASKETGTVAAPKMDLTLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAV 62
A G A+ +L L YN+M+++KELF P V GKVGMYVCGVTAYDLSH+GHAR V
Sbjct: 46 ALASNGAPASRGRELHL--YNTMSRKKELFKPKVEGKVGMYVCGVTAYDLSHIGHARVYV 103
Query: 63 SFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQC 122
+FD+LYRYL+HL EV YVRNFTDVDDKII RAN+LGE+P+SLS RYC+E+L DMA L C
Sbjct: 104 TFDVLYRYLKHLGYEVRYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFLSDMAYLHC 163
Query: 123 LPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAG 182
LPP+ +PRVSDH+ QI DMI QI++N CAY V+GDV+F+V+K P YG+LSG++LE+NRAG
Sbjct: 164 LPPSVEPRVSDHIPQIIDMIKQILDNGCAYRVDGDVYFSVDKFPEYGKLSGRKLEDNRAG 223
Query: 183 ERVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGG 242
ERVAVDSRK+NPADFALWKAAK GEP WDSPWGPGRPGWHIECSAMSA YL FDIHGG
Sbjct: 224 ERVAVDSRKKNPADFALWKAAKEGEPFWDSPWGPGRPGWHIECSAMSAAYLGHSFDIHGG 283
Query: 243 GIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHP 302
G+DL+FPHHENEIAQSCAAC DSN+SYW+HNG VT ++EKMSKSLGNFFTIRQ+ + YHP
Sbjct: 284 GMDLVFPHHENEIAQSCAACCDSNISYWIHNGFVTVDSEKMSKSLGNFFTIRQVIDLYHP 343
Query: 303 LALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAA 362
LALR FL+ HYRSP+NYS +QL+SAS+ +FYIYQTL DCE +L + + P
Sbjct: 344 LALRLFLLGTHYRSPINYSDVQLESASERIFYIYQTLHDCEESLQQHDSTFEKDSVPPDT 403
Query: 363 EDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLK-KKQPKQQQLSLIESL 421
+CINK DEF MSDDL+T + A + LK IN L+ K KKQ K+ +ESL
Sbjct: 404 LNCINKFHDEFVTSMSDDLHTP-VALAALSEPLKTINDLLHTRKGKKQEKR-----LESL 457
Query: 422 RKIENEVKEVLRILGLLPPGAYSEV 446
+E ++++VL +LGL+P +YSE
Sbjct: 458 AALEKKIRDVLSVLGLMPT-SYSEA 481
>gnl|CDD|234705 PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.
Length = 463
Score = 626 bits (1617), Expect = 0.0
Identities = 207/423 (48%), Positives = 266/423 (62%), Gaps = 23/423 (5%)
Query: 18 TLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCE 77
LKIYN++T+QKE F P+ GKV MYVCG T YD +H+GHAR+ V FD+L RYL +L +
Sbjct: 2 MLKIYNTLTRQKEEFKPLEPGKVKMYVCGPTVYDYAHIGHARSFVVFDVLRRYLRYLGYK 61
Query: 78 VTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQ 137
VTYVRN TD+DDKII+RAN+ GE+ L+ RY + DM L LPP +PR ++H+ +
Sbjct: 62 VTYVRNITDIDDKIIKRANEEGESIKELTERYIAAFHEDMDALNVLPPDIEPRATEHIPE 121
Query: 138 IKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADF 197
I ++I ++I+ AY +GDV+F V K P+YG+LSG+ L+ +AG RV V KR+P DF
Sbjct: 122 IIELIERLIDKGHAYEADGDVYFDVRKFPDYGKLSGRNLDELQAGARVEVAEEKRDPLDF 181
Query: 198 ALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257
ALWKAAK GEPSW+SPWG GRPGWHIECSAMS YL FDIHGGG DLIFPHHENEIAQ
Sbjct: 182 ALWKAAKPGEPSWESPWGKGRPGWHIECSAMSTKYLGETFDIHGGGADLIFPHHENEIAQ 241
Query: 258 SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSP 317
S AA +YWMHNG VT N EKMSKSLGNFFTIR + ++Y P LR FL+SAHYRSP
Sbjct: 242 SEAATGKPFANYWMHNGFVTVNGEKMSKSLGNFFTIRDLLKKYDPEVLRFFLLSAHYRSP 301
Query: 318 LNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARM 377
LN+S L+ A A+ +Y L + + A + + ++ F M
Sbjct: 302 LNFSEEALEQAKKALERLYNALAETALGEDD-----------EALLAELEEFKERFIEAM 350
Query: 378 SDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGL 437
DD NT L + + IN +L K E+ + ++ + +LGL
Sbjct: 351 DDDFNTPEALA-VLFELAREINRALETKDK-----------EAAAALAALLRALADVLGL 398
Query: 438 LPP 440
Sbjct: 399 EQD 401
>gnl|CDD|223293 COG0215, CysS, Cysteinyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 464
Score = 551 bits (1423), Expect = 0.0
Identities = 205/429 (47%), Positives = 257/429 (59%), Gaps = 28/429 (6%)
Query: 18 TLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCE 77
LK+YN++T+QKE F PI GKV MYVCG T YD +H+GHAR V FD+L RYL +L +
Sbjct: 1 MLKLYNTLTRQKEEFVPIDPGKVKMYVCGPTVYDYAHIGHARTYVVFDVLRRYLRYLGYK 60
Query: 78 VTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQ 137
VTYVRN TD+DDKII RA + G + ++ RY + DM L LPP +PR ++H+++
Sbjct: 61 VTYVRNITDIDDKIINRAREEGLSIREVAERYIAAFFEDMDALNVLPPDIEPRATEHIDE 120
Query: 138 IKDMITQIINNDCAYVVE-GDVFFAVEKSPNYGRLSG-QRLENNRAGERVAVDSRKRNPA 195
I + I ++I AYV + GDV+F V K +YG+LSG LE +AG RV VD KRNP
Sbjct: 121 IIEFIEKLIEKGYAYVADDGDVYFDVSKFKDYGKLSGRDSLEELQAGARVEVDEEKRNPL 180
Query: 196 DFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEI 255
DF LWKAAK GEPSWDSPWG GRPGWHIECSAMS YL FDIHGGG DLIFPHHENEI
Sbjct: 181 DFVLWKAAKPGEPSWDSPWGKGRPGWHIECSAMSTKYLGETFDIHGGGSDLIFPHHENEI 240
Query: 256 AQSCAACQDSN-VSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHY 314
AQS AA YWMHNG + + EKMSKSLGNF T+R + ++Y P LR FL+S+HY
Sbjct: 241 AQSEAATGVKPFAKYWMHNGFLNIDGEKMSKSLGNFITVRDLLKKYDPEVLRLFLLSSHY 300
Query: 315 RSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFH 374
RSPL++S L+ A A+ +Y L+ A + + F
Sbjct: 301 RSPLDFSEELLEEAKKALERLYNALRRLRDLA------------GDAELADLKEFEARFR 348
Query: 375 ARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRI 434
+ DD NT L + K IN L + K + LS + K +L I
Sbjct: 349 EALDDDFNTPKALA-VLFELAKEINRLLE--EGKSDAKAVLSAL----------KALLAI 395
Query: 435 LGLLPPGAY 443
LGL G +
Sbjct: 396 LGLKVLGLF 404
>gnl|CDD|232974 TIGR00435, cysS, cysteinyl-tRNA synthetase. This model finds the
cysteinyl-tRNA synthetase from most but not from all
species. The enzyme from one archaeal species,
Archaeoglobus fulgidus, is found but the equivalent
enzymes from some other Archaea, including Methanococcus
jannaschii, are not found, although biochemical evidence
suggests that tRNA(Cys) in these species are charged
directly with Cys rather than through a misacylation and
correction pathway as for tRNA(Gln) [Protein synthesis,
tRNA aminoacylation].
Length = 464
Score = 484 bits (1248), Expect = e-169
Identities = 200/432 (46%), Positives = 267/432 (61%), Gaps = 26/432 (6%)
Query: 19 LKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
LK+YN++T+QKE F P+V+GKV MYVCG T YD H+GHAR A+ FD+L RYL +L +V
Sbjct: 1 LKLYNTLTRQKEEFEPLVQGKVKMYVCGPTVYDYCHIGHARTAIVFDVLRRYLRYLGYKV 60
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
YV+N TD+DDKII+RA + GE+ +S R+ + Y DM L LPP +PR ++H+++I
Sbjct: 61 QYVQNITDIDDKIIKRARENGESVYEVSERFIEAYFEDMKALNVLPPDLEPRATEHIDEI 120
Query: 139 KDMITQIINNDCAYVVE-GDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADF 197
+ I Q+I AYV + GDV+F V K +YG+LS Q L+ AG RV VD KRN DF
Sbjct: 121 IEFIEQLIEKGYAYVSDNGDVYFDVSKFKDYGKLSKQDLDQLEAGARVDVDEAKRNKLDF 180
Query: 198 ALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQ 257
LWK++K GEP WDSPWG GRPGWHIECSAM+ YL + DIHGGG+DLIFPHHENEIAQ
Sbjct: 181 VLWKSSKEGEPKWDSPWGKGRPGWHIECSAMNDKYLGDQIDIHGGGVDLIFPHHENEIAQ 240
Query: 258 SCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSP 317
S AA YWMHNG + +NEKMSKSLGNFFT+R + + Y P LR+FL+S HYRSP
Sbjct: 241 SEAAFGKQLAKYWMHNGFLMIDNEKMSKSLGNFFTVRDVLKNYDPEILRYFLLSVHYRSP 300
Query: 318 LNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARM 377
L++S L++A +A+ +Y+ L+ + +L+ + + F M
Sbjct: 301 LDFSEELLEAAKNALERLYKALRVLDTSLAYSGNQSLNKFPDE------KEFEARFVEAM 354
Query: 378 SDDLNTSHILT-------------------GAFQDALKFINSSLNMLKKKQPKQQQLSLI 418
DDLNT++ L + L F+ S L +L K Q
Sbjct: 355 DDDLNTANALAVLFELAKSINLTFVSKADAALLIEHLIFLESRLGLLLGLPSKPVQAGSN 414
Query: 419 ESLRKIENEVKE 430
+ L +IE ++E
Sbjct: 415 DDLGEIEALIEE 426
>gnl|CDD|216482 pfam01406, tRNA-synt_1e, tRNA synthetases class I (C) catalytic
domain. This family includes only cysteinyl tRNA
synthetases.
Length = 301
Score = 442 bits (1139), Expect = e-155
Identities = 171/291 (58%), Positives = 212/291 (72%), Gaps = 1/291 (0%)
Query: 32 FTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKI 91
F P+ +GKV MYVCG T YD SH+GHAR+AV+FD+L RYL+ L +V +V+NFTD+DDKI
Sbjct: 2 FVPLHQGKVNMYVCGPTVYDDSHIGHARSAVAFDVLRRYLQALGYDVQFVQNFTDIDDKI 61
Query: 92 IRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCA 151
I+RA GE+ L+ R+ Y DM L LPP +PRV++H+++I + I ++I A
Sbjct: 62 IKRAQQQGESFRELAARFITAYTKDMDALNVLPPDLEPRVTEHIDEIIEFIERLIKKGYA 121
Query: 152 YVVE-GDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFALWKAAKAGEPSW 210
YV + GDV+F V P+YG+LSGQ LE AG R V KR+P DFALWKA+K GEPSW
Sbjct: 122 YVSDNGDVYFDVSSFPDYGKLSGQNLEQLEAGARGEVGEGKRDPLDFALWKASKEGEPSW 181
Query: 211 DSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYW 270
DSPWG GRPGWHIECSAM+ YL S+ DIHGGG+DL FPHHENEIAQS AA YW
Sbjct: 182 DSPWGKGRPGWHIECSAMARKYLGSQIDIHGGGVDLKFPHHENEIAQSEAAFDQQLAKYW 241
Query: 271 MHNGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYS 321
+HNGH+ EKMSKSLGNF TIR + +RY P LR+FL+S HYRSPL++S
Sbjct: 242 LHNGHLMIEGEKMSKSLGNFLTIRDVLKRYDPRILRYFLLSVHYRSPLDFS 292
>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional.
Length = 651
Score = 367 bits (944), Expect = e-121
Identities = 175/453 (38%), Positives = 238/453 (52%), Gaps = 33/453 (7%)
Query: 14 KMDLTLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLE- 72
K LK+ NS+T K F P +V Y CG T YD SHLGHAR V+FD++ R LE
Sbjct: 35 KYLTGLKVNNSLTGGKVEFVPQNGRQVRWYTCGPTVYDSSHLGHARTYVTFDIIRRILED 94
Query: 73 HLKCEVTYVRNFTDVDDKIIRRANDLG-ENPLSLSNRYCQEYLVDMADLQCLPPTYQPRV 131
+ +V YV N TD+DDKII+RA + L L+ ++ +E+ DM L PP RV
Sbjct: 95 YFGYDVFYVMNITDIDDKIIKRAREEKLSIFLELARKWEKEFFEDMKALNVRPPDVITRV 154
Query: 132 SDHMEQIKDMITQIINNDCAYVVEGDVFFAVEK----SPNYGRL---SGQRLENNRAGER 184
S+++ +I D I +II+N AY G V+F VE Y +L S + GE
Sbjct: 155 SEYVPEIVDFIQKIIDNGFAYESNGSVYFDVEAFRKAGHVYPKLEPESVADEDRIAEGEG 214
Query: 185 V--AVDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGG 242
V KR+P DFALWKA+K GEPSWDSPWG GRPGWHIECSAM+++ L DIH G
Sbjct: 215 ALGKVSGEKRSPNDFALWKASKPGEPSWDSPWGKGRPGWHIECSAMASNILGDPIDIHSG 274
Query: 243 GIDLIFPHHENEIAQSCAACQDSN--VSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERY 300
GIDL FPHH+NE+AQS A D + V+Y++H+GH+ KMSKSL NF TIRQ +Y
Sbjct: 275 GIDLKFPHHDNELAQS-EAYFDKHQWVNYFLHSGHLHIKGLKMSKSLKNFITIRQALSKY 333
Query: 301 HPLALR-HFLISAHYRSPLNYSVLQLDSA--SDAVFYIYQTLQDCEVALSPFQEHGKTAR 357
+R FL+ + P+NYS +D A D VF+ + + ++ L + +
Sbjct: 334 TARQIRLLFLLH-KWDKPMNYSDESMDEAIEKDKVFFNF--FANVKIKLRESEL-TSPQK 389
Query: 358 INPAAEDCINKLR---DEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQ 414
+ HA + D+ +T L A Q + N+ LN +QP
Sbjct: 390 WTQHDFELNELFEETKSAVHAALLDNFDTPEALQ-ALQKLISATNTYLN--SGEQPSAPL 446
Query: 415 LSLIESLRKIENEVKEVLRILGLLPPGAYSEVK 447
LR + V ++L I GL+ +
Sbjct: 447 ------LRSVAQYVTKILSIFGLVEGSDGLGSQ 473
>gnl|CDD|173001 PRK14535, cysS, cysteinyl-tRNA synthetase; Provisional.
Length = 699
Score = 364 bits (935), Expect = e-119
Identities = 186/391 (47%), Positives = 238/391 (60%), Gaps = 30/391 (7%)
Query: 21 IYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTY 80
IYN++T+QKE F PI V MYVCG+T YD HLGHAR V FD++ R+L +TY
Sbjct: 230 IYNTLTRQKEPFAPIDPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGYPLTY 289
Query: 81 VRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKD 140
VRN TD+DDKII RA + GE L+ R+ Q D L L P +P+ ++++ Q+
Sbjct: 290 VRNITDIDDKIIARAAENGETIGELTARFIQAMHEDADALGVLRPDIEPKATENIPQMIA 349
Query: 141 MITQIINNDCAY-VVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVAVDSRKRNPADFAL 199
MI +I N AY GDV++AV + YG+LSG+ L++ RAGERV VD KR+P DF L
Sbjct: 350 MIETLIQNGKAYPAANGDVYYAVREFAAYGQLSGKSLDDLRAGERVEVDGFKRDPLDFVL 409
Query: 200 WKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSC 259
WKAAKAGEP+W+SPWG GRPGWHIECSAMS + FDIHGGG DL FPHHENEIAQS
Sbjct: 410 WKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADLQFPHHENEIAQSV 469
Query: 260 AACQD----------------SNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHPL 303
A S+V YW+HNG + + EKMSKSLGNFFTIR++ ++Y P
Sbjct: 470 GATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFTIREVLKQYDPE 529
Query: 304 ALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAE 363
+R F++ AHYRSPLNYS LD A A+ +Y TL++ A
Sbjct: 530 VVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPAA-------------EFMLS 576
Query: 364 DCINKLRDEFHARMSDDLNTSHILTGAFQDA 394
+ +N F+A M+DD T + F+ A
Sbjct: 577 ENVNDYTRRFYAAMNDDFGTVEAVAVLFELA 607
>gnl|CDD|184731 PRK14536, cysS, cysteinyl-tRNA synthetase; Provisional.
Length = 490
Score = 297 bits (763), Expect = 5e-96
Identities = 141/407 (34%), Positives = 205/407 (50%), Gaps = 49/407 (12%)
Query: 17 LTLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKC 76
+ L++YN++ +Q+E F PI G V +Y CG T Y+ +H+G+ R V D L R L L
Sbjct: 1 MALRLYNTLGRQQEEFQPIEHGHVRLYGCGPTVYNYAHIGNLRTYVFQDTLRRTLHFLGY 60
Query: 77 EVTYVRNFTDV----------DDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPT 126
VT+V N TDV +DK+++ A + G++ L ++ Y + D A L P+
Sbjct: 61 RVTHVMNITDVGHLTDDADSGEDKMVKSAQEHGKSVLEIAAHYTAAFFRDTARLNIERPS 120
Query: 127 YQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNRAGERVA 186
++H++ + +I ++ Y G+V+F + P+YG L+ +E+ +AG R+
Sbjct: 121 IVCNATEHIQDMIALIKRLEARGHTYCAGGNVYFDIRTFPSYGSLASAAVEDLQAGARIE 180
Query: 187 VDSRKRNPADFALWKAAKAGEP---SWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGG 243
D+ KRNP DF LW E +WDSPWG G PGWHIECSAMS YL + DIH GG
Sbjct: 181 HDTNKRNPHDFVLWFTRSKFENHALTWDSPWGRGYPGWHIECSAMSMKYLGEQCDIHIGG 240
Query: 244 IDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITER-YHP 302
+D I HH NEIAQ AA V YW+H+ + N KMSKS G F T+ + E+ + P
Sbjct: 241 VDHIRVHHTNEIAQCEAATGKPWVRYWLHHEFLLMNKGKMSKSAGQFLTLSSLQEKGFQP 300
Query: 303 LALRHFLISAHYRSPLNYS------------------VLQLDSASDAVFYIYQTLQDC-- 342
L R FL+ HYRS L +S +D+A + TL +C
Sbjct: 301 LDYRFFLLGGHYRSQLAFSWEALKTAKAARRSLVRRVARVVDAARATTGSVRGTLAECAA 360
Query: 343 -EVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILT 388
VA S +E + +F A + DD +T L+
Sbjct: 361 ERVAESR----------ASESELLL----TDFRAALEDDFSTPKALS 393
>gnl|CDD|132488 TIGR03447, mycothiol_MshC, cysteine--1-D-myo-inosityl
2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members
of this protein family are MshC,
l-cysteine:1-D-myo-inosityl
2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an
enzyme that uses ATP to ligate a Cys residue to a
mycothiol precursor molecule, in the second to last step
in mycothiol biosynthesis. This enzyme shows
considerable homology to Cys--tRNA ligases, and many
instances are misannotated as such. Mycothiol is found
in Mycobacterium tuberculosis, Corynebacterium
glutamicum, Streptomyces coelicolor, and various other
members of the Actinobacteria. Mycothiol is an analog to
glutathione [Biosynthesis of cofactors, prosthetic
groups, and carriers, Glutathione and analogs].
Length = 411
Score = 273 bits (701), Expect = 7e-88
Identities = 135/379 (35%), Positives = 204/379 (53%), Gaps = 39/379 (10%)
Query: 19 LKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEV 78
L+++++ Q P + GMYVCG+T YD +HLGHA ++FDL+ R V
Sbjct: 18 LRLFDTADGQVRPVEP--GPEAGMYVCGITPYDATHLGHAATYLTFDLVNRVWRDAGHRV 75
Query: 79 TYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQI 138
YV+N TDVDD + RA G + L + DM L+ LPP + ++++
Sbjct: 76 HYVQNVTDVDDPLFERAERDGVDWRELGTSQIDLFREDMEALRVLPPRDYIGAVESIDEV 135
Query: 139 KDMITQIINNDCAYVVEG----DVFFAVEKSPNYGRLSG------QRLENNRAG--ERVA 186
+M+ +++ + AY+VEG DV+F+++ + +G SG L R G +R
Sbjct: 136 VEMVEKLLASGAAYIVEGPEYPDVYFSIDATEQFGYESGYDRATMLELFAERGGDPDRPG 195
Query: 187 VDSRKRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDL 246
KR+P D LW+AA+ GEPSWDSP+G GRPGWHIECSA++ + L + FDI GGG DL
Sbjct: 196 ----KRDPLDALLWRAAREGEPSWDSPFGRGRPGWHIECSAIALNRLGAGFDIQGGGSDL 251
Query: 247 IFPHHENEIAQSCAACQDSNVS-YWMHNGHVTNNNEKMSKSLGNFFTIRQIT-ERYHPLA 304
IFPHHE A + AA ++ +++H G + + EKMSKSLGN + ++ P A
Sbjct: 252 IFPHHEFSAAHAEAATGVRRMARHYVHAGMIGLDGEKMSKSLGNLVFVSKLRAAGVDPAA 311
Query: 305 LRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAED 364
+R L++ HYR ++ +DAV L + E L+ ++ P A D
Sbjct: 312 IRLGLLAGHYRQDRDW--------TDAV------LAEAEARLARWRA-ALALPDAPDATD 356
Query: 365 CINKLRDEFHARMSDDLNT 383
I +LR +++DL+T
Sbjct: 357 LIARLRQH----LANDLDT 371
>gnl|CDD|183518 PRK12418, PRK12418, cysteinyl-tRNA synthetase; Provisional.
Length = 384
Score = 261 bits (670), Expect = 2e-83
Identities = 129/356 (36%), Positives = 189/356 (53%), Gaps = 29/356 (8%)
Query: 38 GKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRAND 97
G MYVCG+T YD +HLGHA ++FDL+ R +V YV+N TDVDD ++ RA
Sbjct: 8 GTATMYVCGITPYDATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNVTDVDDPLLERAAR 67
Query: 98 LGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRVSDHMEQIKDMITQIINNDCAYVVEG- 156
G + L+ R + DM L+ LPP + + ++ +++ +++ + AYVV+
Sbjct: 68 DGVDWRDLAEREIALFREDMEALRVLPPRDYVGAVESIPEVVELVEKLLASGAAYVVDDE 127
Query: 157 ---DVFFAVEKSPNYGRLSGQRLENNRA--GERVAVDSR--KRNPADFALWKAAKAGEPS 209
DV+F+V+ +P +G SG ER R KR+P D LW+AA+ GEPS
Sbjct: 128 EYPDVYFSVDATPQFGYESGYDRATMLELFAERGGDPDRPGKRDPLDALLWRAARPGEPS 187
Query: 210 WDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAAC-QDSNVS 268
W SP+GPGRPGWHIECSA++ + L S FDI GGG DLIFPHHE A + AA +
Sbjct: 188 WPSPFGPGRPGWHIECSAIALNRLGSGFDIQGGGSDLIFPHHEFSAAHAEAATGERRFAR 247
Query: 269 YWMHNGHVTNNNEKMSKSLGNFFTIRQIT-ERYHPLALRHFLISAHYRSPLNYSVLQLDS 327
+++H G + + EKMSKS GN + ++ P A+R L++ HYR+ ++ L
Sbjct: 248 HYVHAGMIGLDGEKMSKSRGNLVFVSRLRAAGVDPAAIRLALLAGHYRADREWTDAVLAE 307
Query: 328 ASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNT 383
A L A + P A D + ++R ++DDL+T
Sbjct: 308 AEA-------RLARWRAAAA--------LPAGPDAADVVARVRA----ALADDLDT 344
>gnl|CDD|173899 cd00672, CysRS_core, catalytic core domain of cysteinyl tRNA
synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic
core domain. This class I enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding.
Length = 213
Score = 192 bits (490), Expect = 6e-59
Identities = 64/101 (63%), Positives = 76/101 (75%)
Query: 221 WHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNN 280
WHIECSAM+ YL FDIHGGG+DLIFPHHENEIAQS AA YW+H GH+T +
Sbjct: 113 WHIECSAMAMKYLGETFDIHGGGVDLIFPHHENEIAQSEAATGKPFARYWLHTGHLTIDG 172
Query: 281 EKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYS 321
EKMSKSLGNF T+R ++Y P LR L+S+HYRSPL++S
Sbjct: 173 EKMSKSLGNFITVRDALKKYDPEVLRLALLSSHYRSPLDFS 213
Score = 171 bits (435), Expect = 9e-51
Identities = 57/112 (50%), Positives = 77/112 (68%)
Query: 20 KIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVT 79
++YN++T+QKE F P+ G V MYVCG T YD +H+GHAR V FD+L RYLE L +V
Sbjct: 1 RLYNTLTRQKEEFVPLNPGLVTMYVCGPTVYDYAHIGHARTYVVFDVLRRYLEDLGYKVR 60
Query: 80 YVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPTYQPRV 131
YV+N TD+DDKII+RA + G + +++ Y +E+ DM L LPP PRV
Sbjct: 61 YVQNITDIDDKIIKRAREEGLSWKEVADYYTKEFFEDMKALNVLPPDVVPRV 112
>gnl|CDD|173000 PRK14534, cysS, cysteinyl-tRNA synthetase; Provisional.
Length = 481
Score = 197 bits (502), Expect = 1e-57
Identities = 136/449 (30%), Positives = 212/449 (47%), Gaps = 40/449 (8%)
Query: 17 LTLKIYNSMTQQKELFTPIVRGKVGMYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKC 76
+ LK+YN+ T+ KV Y CG T Y+ +H+G+ R + DLL + L LK
Sbjct: 1 MLLKLYNTKTKDLSELKNFSDVKV--YACGPTVYNYAHIGNFRTYIFEDLLIKSLRLLKY 58
Query: 77 EVTYVRNFTDV----------DDKIIRRANDLGENPLSLSNRYCQEYLVDMADLQCLPPT 126
V Y N TD+ +DK+++ A + G +S + + + D L + P
Sbjct: 59 NVNYAMNITDIGHLTGDFDDGEDKVVKAARERGLTVYEISRFFTEAFFDDCKKLNIVYPD 118
Query: 127 YQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRLSGQRLENNR--AGER 184
S+++ + +++ + N Y V G+V+F +YG+++G L + + + R
Sbjct: 119 KVLVASEYIPIMIEVVKVLEENGFTYFVNGNVYFDTSCFKSYGQMAGINLNDFKDMSVSR 178
Query: 185 VAVDSRKRNPADFALW---KAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHG 241
V +D KRN +DF LW K E WDSPWG G P WH+EC+AM+ Y S DIH
Sbjct: 179 VEIDKSKRNKSDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFKSTLDIHL 238
Query: 242 GGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNNEKMSKSLGNFFTIRQI-TERY 300
GG+D I HH NEIA + ++H + EKMSKS NF TI+ + + +
Sbjct: 239 GGVDHIGVHHINEIAIAECYLNKKWCDMFVHGEFLIMEYEKMSKSNNNFITIKDLEDQGF 298
Query: 301 HPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINP 360
PL R+F ++AHYR+ L ++ L + A + L +L F +N
Sbjct: 299 SPLDFRYFCLTAHYRTQLKFTFNNLKACKIARENMLNKLTYFYSSLDQFD-------LNL 351
Query: 361 AAEDCIN-------KLRDEFHARMSDDLNTSHILTGAFQDALKFIN-SSLNMLKKKQPKQ 412
+D N + D F +++ DLN L D +K N S L+ L+
Sbjct: 352 LNKDLENIEFSLEKEYYDSFLEKIAFDLNIPQGL-ALLWDIIKDDNLSFLSKLRLAFKFD 410
Query: 413 QQLSL---IESLRKIENE---VKEVLRIL 435
+ LSL E LR+IEN + + ++ L
Sbjct: 411 EVLSLGLREEILREIENHRIVIDDNMKSL 439
>gnl|CDD|173901 cd00802, class_I_aaRS_core, catalytic core domain of class I amino
acyl-tRNA synthetase. Class I amino acyl-tRNA
synthetase (aaRS) catalytic core domain. These enzymes
are mostly monomers which aminoacylate the 2'-OH of the
nucleotide at the 3' of the appropriate tRNA. The core
domain is based on the Rossman fold and is responsible
for the ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding.
Length = 143
Score = 60.6 bits (147), Expect = 4e-11
Identities = 27/117 (23%), Positives = 42/117 (35%), Gaps = 13/117 (11%)
Query: 42 MYVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGEN 101
G+T H+GH R V+FD L + L +V + D I AN GEN
Sbjct: 1 TTFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPANKKGEN 60
Query: 102 PLSLSNRYCQ------EYLVDMADLQCL----PPTYQPRVSDHM---EQIKDMITQI 145
+ R+ + EY+ A L SD + E +++ +
Sbjct: 61 AKAFVERWIERIKEDVEYMFLQAADFLLLYETECDIHLGGSDQLGHIELGLELLKKA 117
Score = 43.2 bits (102), Expect = 4e-05
Identities = 17/70 (24%), Positives = 26/70 (37%), Gaps = 5/70 (7%)
Query: 220 GWHIECSAMSAHYLSSKFDIHGGGIDLIFPHHENEIAQS-CAACQDSNVSYWMHNGHVT- 277
+ +A ++ DIH GG D + H E + A + + G V
Sbjct: 77 EYMFLQAADFLLLYETECDIHLGGSDQLG-HIELGLELLKKAGGPARP--FGLTFGRVMG 133
Query: 278 NNNEKMSKSL 287
+ KMSKS
Sbjct: 134 ADGTKMSKSK 143
>gnl|CDD|173906 cd00812, LeuRS_core, catalytic core domain of leucyl-tRNA
synthetases. Leucyl tRNA synthetase (LeuRS) catalytic
core domain. This class I enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding. In Aquifex
aeolicus, the gene encoding LeuRS is split in two, just
before the KMSKS motif. Consequently, LeuRS is a
heterodimer, which likely superimposes with the LeuRS
monomer found in most other organisms. LeuRS has an
insertion in the core domain, which is subject to both
deletions and rearrangements and thus differs between
prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This
editing region hydrolyzes mischarged cognate tRNAs and
thus prevents the incorporation of chemically similar
amino acids.
Length = 314
Score = 51.1 bits (123), Expect = 4e-07
Identities = 23/90 (25%), Positives = 32/90 (35%), Gaps = 23/90 (25%)
Query: 237 FDIHGGGIDLI--------FPHHENEIAQSCAACQDSN--VSYW----MHNGHVTNNNEK 282
DI+ GG + F H A D + G V EK
Sbjct: 225 VDIYIGGKEHAPNHLLYSRFNHK---------ALFDEGLVTDEPPKGLIVQGMVLLEGEK 275
Query: 283 MSKSLGNFFTIRQITERYHPLALRHFLISA 312
MSKS GN T + ++Y A R +++ A
Sbjct: 276 MSKSKGNVVTPDEAIKKYGADAARLYILFA 305
>gnl|CDD|223221 COG0143, MetG, Methionyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 558
Score = 50.7 bits (122), Expect = 9e-07
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 273 NGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLIS 311
+G +T +KMSKS GN ++ E+Y ALR++L
Sbjct: 324 HGFLTLEGQKMSKSRGNVVDPDELLEQYGVDALRYYLAR 362
Score = 29.6 bits (67), Expect = 4.5
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 54 HLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDD---KIIRRANDLGENPLSLSNRY 109
HLGH ++ D+ RYL EV ++ T D+ KI +A G P L ++
Sbjct: 21 HLGHLYTYLAADVYARYLRLRGYEVFFL---TGTDEHGTKIELKAEKEGITPQELVDKN 76
>gnl|CDD|220185 pfam09334, tRNA-synt_1g, tRNA synthetases class I (M). This family
includes methionyl tRNA synthetases.
Length = 388
Score = 49.6 bits (119), Expect = 2e-06
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 273 NGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 312
+G +T KMSKS GN ++ +RY ALR++L
Sbjct: 315 HGWLTVEGGKMSKSRGNVVDPDELLDRYGVDALRYYLARE 354
Score = 34.5 bits (80), Expect = 0.094
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 6/70 (8%)
Query: 54 HLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDD---KIIRRANDLGENPLSLSNRYC 110
H+GH + D+ RYL +V +V T D+ KI A G P L +RY
Sbjct: 15 HIGHLYTTIPADVYARYLRLRGYDVLFV---TGTDEHGTKIELAAEKEGVTPQELVDRYH 71
Query: 111 QEYLVDMADL 120
+E+
Sbjct: 72 EEFKELFKKF 81
>gnl|CDD|215518 PLN02959, PLN02959, aminoacyl-tRNA ligase.
Length = 1084
Score = 49.3 bits (118), Expect = 4e-06
Identities = 21/40 (52%), Positives = 25/40 (62%)
Query: 273 NGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 312
NGH+ N+EKMSKS GNF T+RQ E + A R L A
Sbjct: 709 NGHLMLNSEKMSKSTGNFLTLRQAIEEFSADATRFALADA 748
>gnl|CDD|173907 cd00814, MetRS_core, catalytic core domain of methioninyl-tRNA
synthetases. Methionine tRNA synthetase (MetRS)
catalytic core domain. This class I enzyme aminoacylates
the 2'-OH of the nucleotide at the 3' of the appropriate
tRNA. MetRS, which consists of the core domain and an
anti-codon binding domain, functions as a monomer.
However, in some species the anti-codon binding domain
is followed by an EMAP domain. In this case, MetRS
functions as a homodimer. The core domain is based on
the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding. As a result of a deletion event, MetRS has a
significantly shorter core domain insertion than IleRS,
ValRS, and LeuR. Consequently, the MetRS insertion
lacks the editing function.
Length = 319
Score = 47.5 bits (114), Expect = 7e-06
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 273 NGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 312
+G++T +KMSKS GN + ERY ALR++L+
Sbjct: 271 HGYLTVEGKKMSKSRGNVVDPDDLLERYGADALRYYLLRE 310
Score = 31.3 bits (72), Expect = 0.84
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 54 HLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDD---KIIRRANDLGENPLSLSNRYC 110
HLGH V D+ RY +V +V T D+ KI ++A + G P L ++Y
Sbjct: 16 HLGHLYGTVLADVFARYQRLRGYDVLFV---TGTDEHGTKIEQKAEEEGVTPQELCDKYH 72
Query: 111 QEY 113
+ +
Sbjct: 73 EIF 75
>gnl|CDD|237049 PRK12300, leuS, leucyl-tRNA synthetase; Reviewed.
Length = 897
Score = 47.2 bits (113), Expect = 2e-05
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 273 NGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 312
NG V +KMSKS GN +R+ E Y +R +L S+
Sbjct: 568 NGFVLLEGKKMSKSKGNVIPLRKAIEEYGADVVRLYLTSS 607
>gnl|CDD|232955 TIGR00395, leuS_arch, leucyl-tRNA synthetase, archaeal and
cytosolic family. The leucyl-tRNA synthetases belong to
two families so broadly different that they are
represented by separate models. This model includes both
archaeal and cytosolic eukaryotic leucyl-tRNA
synthetases; the eubacterial and mitochondrial forms
differ so substantially that some other tRNA ligases
score higher by this model than does any eubacterial
LeuS [Protein synthesis, tRNA aminoacylation].
Length = 938
Score = 43.3 bits (102), Expect = 2e-04
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 273 NGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 312
NG+V +KMSKS GN T+ Q E++ R ++ A
Sbjct: 611 NGYVMLEGKKMSKSKGNVLTLEQAVEKFGADVARLYIADA 650
>gnl|CDD|185674 cd00668, Ile_Leu_Val_MetRS_core, catalytic core domain of
isoleucyl, leucyl, valyl and methioninyl tRNA
synthetases. Catalytic core domain of isoleucyl,
leucyl, valyl and methioninyl tRNA synthetases. These
class I enzymes are all monomers. However, in some
species, MetRS functions as a homodimer, as a result of
an additional C-terminal domain. These enzymes
aminoacylate the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding. Enzymes in
this subfamily share an insertion in the core domain,
which is subject to both deletions and rearrangements.
This editing region hydrolyzes mischarged cognate tRNAs
and thus prevents the incorporation of chemically
similar amino acids. MetRS has a significantly shorter
insertion, which lacks the editing function.
Length = 312
Score = 42.0 bits (99), Expect = 4e-04
Identities = 29/119 (24%), Positives = 40/119 (33%), Gaps = 16/119 (13%)
Query: 209 SWDSPWGPGRPGWHIEC-------SAMSAHYLSSKF--------DIHGGGIDLIFPHHEN 253
S WG P + S Y K D H G D++
Sbjct: 184 SRQRYWGTPLPEDVFDVWFDSGIGPLGSLGYPEEKEWFKDSYPADWHLIGKDILRGWANF 243
Query: 254 EIAQSCAACQDSNVSYWMHNGHVT-NNNEKMSKSLGNFFTIRQITERYHPLALRHFLIS 311
I A + + +G V +KMSKS GN + E+Y ALR++L S
Sbjct: 244 WITMLVALFGEIPPKNLLVHGFVLDEGGQKMSKSKGNVIDPSDVVEKYGADALRYYLTS 302
>gnl|CDD|223569 COG0495, LeuS, Leucyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 814
Score = 41.9 bits (99), Expect = 6e-04
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 273 NGHVT-NNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 312
G V EKMSKS GN + E+Y +R +++ A
Sbjct: 569 QGMVLGEEGEKMSKSKGNVVDPEEAVEKYGADTVRLYIMFA 609
>gnl|CDD|237012 PRK11893, PRK11893, methionyl-tRNA synthetase; Reviewed.
Length = 511
Score = 40.6 bits (96), Expect = 0.002
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 273 NGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLIS 311
+G +T + EKMSKSLGN + + Y A+R+FL+
Sbjct: 290 HGFLTLDGEKMSKSLGNVIDPFDLVDEYGVDAVRYFLLR 328
Score = 28.7 bits (65), Expect = 8.6
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 54 HLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDD---KIIRRANDLGENPLSLSNRYC 110
H+GHA ++ D+L R+ L+ + T D+ KI R+A + G +P L++R
Sbjct: 17 HIGHAYTTLAADVLARFKR-LRGYDVFF--LTGTDEHGQKIQRKAEEAGISPQELADRNS 73
Query: 111 QEYLVDMADL 120
+ L
Sbjct: 74 AAFKRLWEAL 83
>gnl|CDD|232957 TIGR00398, metG, methionyl-tRNA synthetase. The methionyl-tRNA
synthetase (metG) is a class I amino acyl-tRNA ligase.
This model appears to recognize the methionyl-tRNA
synthetase of every species, including eukaryotic
cytosolic and mitochondrial forms. The UPGMA difference
tree calculated after search and alignment according to
This model shows an unusual deep split between two
families of MetG. One family contains forms from the
Archaea, yeast cytosol, spirochetes, and E. coli, among
others. The other family includes forms from yeast
mitochondrion, Synechocystis sp., Bacillus subtilis, the
Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori.
The E. coli enzyme is homodimeric, although monomeric
forms can be prepared that are fully active. Activity of
this enzyme in bacteria includes aminoacylation of
fMet-tRNA with Met; subsequent formylation of the Met to
fMet is catalyzed by a separate enzyme. Note that the
protein from Aquifex aeolicus is split into an alpha
(large) and beta (small) subunit; this model does not
include the C-terminal region corresponding to the beta
chain [Protein synthesis, tRNA aminoacylation].
Length = 530
Score = 40.4 bits (95), Expect = 0.002
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 274 GHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLIS 311
G++T KMSKSLGN + R+ LR++L+
Sbjct: 319 GYLTVEGGKMSKSLGNVVDPSDLLARFGADILRYYLLK 356
Score = 32.7 bits (75), Expect = 0.48
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 11/74 (14%)
Query: 43 YVCGVTAYDLSHLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDD---KIIRRANDLG 99
Y G HLGHA + D+ RY EV +V D+ KI +A G
Sbjct: 9 YANGKP-----HLGHAYTTILADVYARYKRLRGYEVLFV---CGTDEHGTKIELKAEQEG 60
Query: 100 ENPLSLSNRYCQEY 113
P L ++Y +E+
Sbjct: 61 LTPKELVDKYHEEF 74
>gnl|CDD|237029 PRK12268, PRK12268, methionyl-tRNA synthetase; Reviewed.
Length = 556
Score = 39.8 bits (94), Expect = 0.003
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 273 NGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISA 312
+ ++T K SKS G + ERY P LR++L +
Sbjct: 325 SEYLTLEGGKFSKSRGWGIWVDDALERYPPDYLRYYLAAN 364
>gnl|CDD|234829 PRK00750, lysK, lysyl-tRNA synthetase; Reviewed.
Length = 510
Score = 39.4 bits (93), Expect = 0.003
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 278 NNNEKMSKSLGNFFTIRQITERYHPLALRHFLI 310
EK+SKS GN TI E P +LR F+
Sbjct: 276 KKGEKISKSKGNVITIEDWLEYAPPESLRLFMF 308
>gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed.
Length = 648
Score = 38.6 bits (91), Expect = 0.007
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 274 GHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLI 310
G + KMSKS GN ++ +RY ALR++L+
Sbjct: 291 GWWLMKDGKMSKSKGNVVDPEELVDRYGLDALRYYLL 327
>gnl|CDD|232956 TIGR00396, leuS_bact, leucyl-tRNA synthetase, eubacterial and
mitochondrial family. The leucyl-tRNA synthetases
belong to two families so broadly different that they
are represented by separate models. This model includes
both eubacterial and mitochondrial leucyl-tRNA
synthetases. It generates higher scores for some
valyl-tRNA synthetases than for any archaeal or
eukaryotic cytosolic leucyl-tRNA synthetase. Note that
the enzyme from Aquifex aeolicus is split into alpha and
beta chains; neither chain is long enough to score above
the trusted cutoff, but the alpha chain scores well
above the noise cutoff. The beta chain must be found by
a model and search designed for partial length matches
[Protein synthesis, tRNA aminoacylation].
Length = 842
Score = 38.2 bits (89), Expect = 0.009
Identities = 30/140 (21%), Positives = 56/140 (40%), Gaps = 8/140 (5%)
Query: 276 VTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDAVFYI 335
V EKMSKS GN ++I E Y ALR F++ + P+ S+ +S +
Sbjct: 599 VYVGYEKMSKSKGNGIDPQEIVESYGADALRLFIM---FMGPIAASLEWNESGLEGARRF 655
Query: 336 YQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFH---ARMSDDLNTSHILTGAFQ 392
+ + ++ E + A E+ +LR + H ++++DL A
Sbjct: 656 LDRVWNLVYEITG--ELDAASLTVTALEEAQKELRRDVHKFLKKVTEDLEKRESFNTAIS 713
Query: 393 DALKFINSSLNMLKKKQPKQ 412
++ +N K+ +
Sbjct: 714 AMMELLNKLYKAKKEALMLE 733
>gnl|CDD|173900 cd00674, LysRS_core_class_I, catalytic core domain of class I
lysyl tRNA synthetase. Class I lysyl tRNA synthetase
(LysRS) catalytic core domain. This class I enzyme is a
monomer which aminoacylates the 2'-OH of the nucleotide
at the 3' of the appropriate tRNA. The core domain is
based on the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding. The class I LysRS is found only in archaea and
some bacteria and has evolved separately from class II
LysRS, as the two do not share structural or sequence
similarity.
Length = 353
Score = 37.7 bits (88), Expect = 0.009
Identities = 11/33 (33%), Positives = 12/33 (36%)
Query: 279 NNEKMSKSLGNFFTIRQITERYHPLALRHFLIS 311
KMS S GN T E P LR+
Sbjct: 272 GGGKMSSSKGNVITPSDWLEVAPPEVLRYLYAR 304
>gnl|CDD|223599 COG0525, ValS, Valyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 877
Score = 38.0 bits (89), Expect = 0.011
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 279 NNEKMSKSLGNFFTIRQITERYHPLALRHFLISAH 313
KMSKS GN + ++Y ALR L S
Sbjct: 522 QGRKMSKSKGNVIDPLDVIDKYGADALRFTLASLA 556
>gnl|CDD|216786 pfam01921, tRNA-synt_1f, tRNA synthetases class I (K). This family
includes only lysyl tRNA synthetases from prokaryotes.
Length = 357
Score = 37.6 bits (88), Expect = 0.012
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 281 EKMSKSLGNFFTIRQITERYHPLALRHFLI 310
KMS S GN TI E P +LR +
Sbjct: 278 GKMSSSKGNVITIEDWLEYAPPESLRFLMF 307
>gnl|CDD|235681 PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed.
Length = 975
Score = 37.8 bits (89), Expect = 0.012
Identities = 17/41 (41%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 273 NGHVTNNN-EKMSKSLGNFFTIRQITERYHPLALRHFLISA 312
+GHV + + +KMSKSLGN+ ++ ++Y ALR +L+S+
Sbjct: 582 HGHVLDEDGQKMSKSLGNYVDPFEVFDKYGADALRWYLLSS 622
>gnl|CDD|224302 COG1384, LysS, Lysyl-tRNA synthetase (class I) [Translation,
ribosomal structure and biogenesis].
Length = 521
Score = 37.7 bits (88), Expect = 0.013
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 279 NNEKMSKSLGNFFTIRQITERYHPLALRHFLISAH 313
KMS S GN ++ E P LR +LI+
Sbjct: 274 GGGKMSSSKGNVISLSDWLEVAPPEVLR-YLIART 307
>gnl|CDD|185677 cd00817, ValRS_core, catalytic core domain of valyl-tRNA
synthetases. Valine amino-acyl tRNA synthetase (ValRS)
catalytic core domain. This enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding. ValRS has an
insertion in the core domain, which is subject to both
deletions and rearrangements. This editing region
hydrolyzes mischarged cognate tRNAs and thus prevents
the incorporation of chemically similar amino acids.
Length = 382
Score = 36.1 bits (84), Expect = 0.032
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 279 NNEKMSKSLGNFFTIRQITERYHPLALRHFLISAH 313
+ KMSKSLGN + + Y ALR L SA
Sbjct: 340 DGRKMSKSLGNVIDPLDVIDGYGADALRFTLASAA 374
>gnl|CDD|153417 cd07963, Anticodon_Ia_Cys, Anticodon-binding domain of cysteinyl
tRNA synthetases. This domain is found in cysteinyl
tRNA synthetases (CysRS), which belong to the class Ia
aminoacyl tRNA synthetases. It lies C-terminal to the
catalytic core domain, and recognizes and specifically
binds to the tRNA anticodon. CysRS catalyzes the
transfer of cysteine to the 3'-end of its tRNA.
Length = 156
Score = 34.1 bits (79), Expect = 0.055
Identities = 26/116 (22%), Positives = 41/116 (35%), Gaps = 29/116 (25%)
Query: 324 QLDSASDAVFYIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNT 383
L+ A A+ +Y L+ D + F A M DD NT
Sbjct: 3 NLEDARAALERLYTALRGVPPT--------------TVDIDWGEPFAERFIAAMDDDFNT 48
Query: 384 SHILTGAFQDALKF-INSSLNMLKKKQPKQQQLSLIESLRKIENEVKEVLRILGLL 438
A A+ F + +N LKK+ ++ +L L+ + +LGLL
Sbjct: 49 P----EAL--AVLFELAREINRLKKEDIEKAA-ALAALLKALGG-------VLGLL 90
>gnl|CDD|215739 pfam00133, tRNA-synt_1, tRNA synthetases class I (I, L, M and V).
Other tRNA synthetase sub-families are too dissimilar to
be included.
Length = 606
Score = 35.4 bits (82), Expect = 0.056
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
Query: 237 FDIHGGGIDLIFPHHENEIAQSCAACQDSNVSYWMHNGHVTNNN-EKMSKSLGNFFTIRQ 295
D+ G D I A + + +G V + KMSKSLGN
Sbjct: 521 ADMLLEGSDQTRGWFYRMIVLGTALTGSAPYKNVLVHGLVRDEQGRKMSKSLGNVIDPLD 580
Query: 296 ITERYHPLALRHFLISAHYRSPLNYS 321
+ ++Y ALR +L S+ Y +N+S
Sbjct: 581 VIDKYGADALRLWLASSDYGRDINFS 606
>gnl|CDD|234655 PRK00133, metG, methionyl-tRNA synthetase; Reviewed.
Length = 673
Score = 35.5 bits (83), Expect = 0.069
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 273 NGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLIS 311
+G +T KMSKS G F R + P LR++L +
Sbjct: 320 HGFLTVEGAKMSKSRGTFIWARTYLDHLDPDYLRYYLAA 358
Score = 30.1 bits (69), Expect = 3.0
Identities = 22/71 (30%), Positives = 28/71 (39%), Gaps = 8/71 (11%)
Query: 54 HLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDK----IIRRANDLGENPLSLSNRY 109
HLGH + D+ RY EV +V DD I+ +A G P L RY
Sbjct: 18 HLGHLVEYIQADIWVRYQRMRGHEVLFVCA----DDAHGTPIMLKAEKEGITPEELIARY 73
Query: 110 CQEYLVDMADL 120
E+ D A
Sbjct: 74 HAEHKRDFAGF 84
>gnl|CDD|214848 smart00840, DALR_2, This DALR domain is found in
cysteinyl-tRNA-synthetases.
Length = 56
Score = 30.6 bits (70), Expect = 0.18
Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 11/67 (16%)
Query: 372 EFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRKIENEVKEV 431
F M DD NT L F + + IN L K ++ L + ++ +
Sbjct: 1 RFEEAMDDDFNTPEALAVLF-ELAREINR----LALKATDAEE------LAALAALLRAL 49
Query: 432 LRILGLL 438
+LGLL
Sbjct: 50 GGVLGLL 56
>gnl|CDD|223138 COG0060, IleS, Isoleucyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 933
Score = 33.7 bits (78), Expect = 0.21
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 281 EKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYS 321
KMSKSLGN + + ++Y LR ++ S+ Y L +S
Sbjct: 601 RKMSKSLGNVVDPQDVIDKYGADILRLWVASSDYWEDLRFS 641
>gnl|CDD|232969 TIGR00422, valS, valyl-tRNA synthetase. The valyl-tRNA synthetase
(ValS) is a class I amino acyl-tRNA ligase and is
particularly closely related to the isoleucyl tRNA
synthetase [Protein synthesis, tRNA aminoacylation].
Length = 861
Score = 33.1 bits (76), Expect = 0.36
Identities = 15/35 (42%), Positives = 17/35 (48%)
Query: 279 NNEKMSKSLGNFFTIRQITERYHPLALRHFLISAH 313
KMSKSLGN + E+Y ALR L S
Sbjct: 522 QGRKMSKSLGNVIDPLDVIEKYGADALRFTLASLV 556
>gnl|CDD|223087 COG0008, GlnS, Glutamyl- and glutaminyl-tRNA synthetases
[Translation, ribosomal structure and biogenesis].
Length = 472
Score = 31.9 bits (73), Expect = 0.68
Identities = 26/108 (24%), Positives = 37/108 (34%), Gaps = 34/108 (31%)
Query: 54 HLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEY 113
H+GHAR A+ + LY K +R D D + R E
Sbjct: 23 HIGHARTAL-LNYLYARKYGGKF---ILR-IEDTDPE-----------------RETPEA 60
Query: 114 LVDM--ADLQCL------PPTYQPRVSDHMEQIKDMITQIINNDCAYV 153
D DL+ L P YQ S+ + + ++I AYV
Sbjct: 61 -EDAILEDLEWLGLDWDEGPYYQ---SERFDIYYEYAEKLIEKGKAYV 104
>gnl|CDD|181787 PRK09343, PRK09343, prefoldin subunit beta; Provisional.
Length = 121
Score = 30.4 bits (69), Expect = 0.71
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 403 NMLKKKQPKQQQLSLIESLR-KIE---NEVKEVLRILGLLPPGA 442
L + Q QQQL + + +I+ E+ + L L LP
Sbjct: 11 AQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDT 54
>gnl|CDD|176232 cd08271, MDR5, Medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family.
This group is a member of the medium chain
dehydrogenases/reductase (MDR)/zinc-dependent alcohol
dehydrogenase-like family, but lacks the zinc-binding
sites of the zinc-dependent alcohol dehydrogenases. The
medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family,
which contains the zinc-dependent alcohol dehydrogenase
(ADH-Zn) and related proteins, is a diverse group of
proteins related to the first identified member, class I
mammalian ADH. MDRs display a broad range of activities
and are distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P)-binding Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group contains a
host of activities, including the founding alcohol
dehydrogenase (ADH), quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. Active site zinc has
a catalytic role, while structural zinc aids in
stability. ADH-like proteins typically form dimers
(typically higher plants, mammals) or tetramers (yeast,
bacteria), and generally have 2 tightly bound zinc atoms
per subunit. The active site zinc is coordinated by a
histidine, two cysteines, and a water molecule. The
second zinc seems to play a structural role, affects
subunit interactions, and is typically coordinated by 4
cysteines.
Length = 325
Score = 31.9 bits (73), Expect = 0.75
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Query: 178 NNRAGE-RVAVDSRKRNPADFALWKAAKAGEPSWDSPWGPG 217
AGE V V + NP D WK G P+W P PG
Sbjct: 24 GPGAGEVLVKVHAAGLNPVD---WKVIAWGPPAWSYPHVPG 61
>gnl|CDD|197491 smart00053, DYNc, Dynamin, GTPase. Large GTPases that mediate
vesicle trafficking. Dynamin participates in the
endocytic uptake of receptors, associated ligands, and
plasma membrane following an exocytic event.
Length = 240
Score = 31.0 bits (70), Expect = 0.93
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 14/88 (15%)
Query: 70 YLEHLKCEVTYVRNFTDVDDKIIRRANDL------GENPLSLSNRYCQEY-----LVDMA 118
Y E L C+ +F +V ++I D G + + ++ R + L+D+
Sbjct: 75 YAEFLHCKGKKFTDFDEVRNEI-EAETDRVTGTNKGISGIPINLRVYSPHVLNLTLIDLP 133
Query: 119 DLQCLPPTYQPRVSDHMEQIKDMITQII 146
+ + QP D QIK MI Q I
Sbjct: 134 GITKVAVGDQPP--DIEYQIKKMIKQFI 159
>gnl|CDD|232953 TIGR00392, ileS, isoleucyl-tRNA synthetase. The isoleucyl tRNA
synthetase (IleS) is a class I amino acyl-tRNA ligase
and is particularly closely related to the valyl tRNA
synthetase. This model may recognize IleS from every
species, including eukaryotic cytosolic and
mitochondrial forms [Protein synthesis, tRNA
aminoacylation].
Length = 861
Score = 31.6 bits (72), Expect = 0.99
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 273 NGHVTNNN-EKMSKSLGNFFTIRQITERYHPLALRHFLISAHYRSPLNYSVLQLDSASDA 331
+G + KMSKSLGN ++ +Y LR ++ S+ L +S L +
Sbjct: 601 HGFTLDEKGRKMSKSLGNVVDPLKVINKYGADILRLYVASSDPWEDLRFSDEILKQVVEK 660
Query: 332 VFYI 335
I
Sbjct: 661 YRKI 664
>gnl|CDD|177869 PLN02224, PLN02224, methionine-tRNA ligase.
Length = 616
Score = 31.6 bits (71), Expect = 1.1
Identities = 13/38 (34%), Positives = 24/38 (63%)
Query: 273 NGHVTNNNEKMSKSLGNFFTIRQITERYHPLALRHFLI 310
+G +T + KM KSLGN ++ +++ P A+R+F +
Sbjct: 357 HGFLTKDGMKMGKSLGNTLEPFELVQKFGPDAVRYFFL 394
>gnl|CDD|237306 PRK13208, valS, valyl-tRNA synthetase; Reviewed.
Length = 800
Score = 31.3 bits (72), Expect = 1.1
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 281 EKMSKSLGNFFTIRQITERYHPLALRHFLISA 312
+KMSKS GN T ++ E+Y A+R++ SA
Sbjct: 532 KKMSKSKGNVVTPEELLEKYGADAVRYWAASA 563
>gnl|CDD|215492 PLN02907, PLN02907, glutamate-tRNA ligase.
Length = 722
Score = 31.2 bits (71), Expect = 1.2
Identities = 42/159 (26%), Positives = 63/159 (39%), Gaps = 46/159 (28%)
Query: 54 HLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEY 113
H+GHA+AA LL +Y Y K+I R +D NP S+ + +
Sbjct: 227 HIGHAKAA----LLNQYFARR-----Y-------KGKLIVRFDD--TNPSKESDEFVENI 268
Query: 114 LVDMADLQCLPP--TYQPRVSDHMEQIKDMITQIINNDCAYVVEGDVFFAVEKSPNYGRL 171
L D+ L TY SD+ Q+ +M ++I AYV +
Sbjct: 269 LKDIETLGIKYDAVTY---TSDYFPQLMEMAEKLIKEGKAYVDDTPR------------- 312
Query: 172 SGQRLENNRAGERVA-VDSRKRNPA---DFALWKAAKAG 206
E R ER+ ++S+ RN + + LWK AG
Sbjct: 313 -----EQMRK-ERMDGIESKCRNNSVEENLRLWKEMIAG 345
>gnl|CDD|173909 cd00818, IleRS_core, catalytic core domain of isoleucyl-tRNA
synthetases. Isoleucine amino-acyl tRNA synthetases
(IleRS) catalytic core domain . This class I enzyme is a
monomer which aminoacylates the 2'-OH of the nucleotide
at the 3' of the appropriate tRNA. The core domain is
based on the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding. IleRS has an insertion in the core domain,
which is subject to both deletions and rearrangements.
This editing region hydrolyzes mischarged cognate tRNAs
and thus prevents the incorporation of chemically
similar amino acids.
Length = 338
Score = 30.7 bits (70), Expect = 1.7
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 281 EKMSKSLGNFFTIRQITERYHPLALRHFLISA 312
KMSKSLGN+ +++ ++Y ALR ++ S+
Sbjct: 298 RKMSKSLGNYVDPQEVVDKYGADALRLWVASS 329
>gnl|CDD|233890 TIGR02486, RDH, reductive dehalogenase. This model represents a
family of corrin and 8-iron Fe-S cluster-containing
reductive dehalogenases found primarily in halorespiring
microorganisms such as dehalococcoides ethenogenes which
contains as many as 17 enzymes of this type with varying
substrate ranges. One example of a characterized species
is the tetrachloroethene reductive dehalogenase
(1.97.1.8) which also acts on trichloroethene converting
it to dichloroethene.
Length = 314
Score = 30.5 bits (69), Expect = 1.8
Identities = 21/104 (20%), Positives = 30/104 (28%), Gaps = 33/104 (31%)
Query: 193 NPADFALWK----------------AAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSK 236
P D + K +K GEP+WD G P + K
Sbjct: 197 KPIDAGMAKFCETCGKCADECPSGAISKGGEPTWDPEDSNGDP--------PGENNPGLK 248
Query: 237 FDIHGGGIDLIFPHHENEIAQSCAACQDSNVSY------WMHNG 274
+ G L NE C CQ + + W+H+
Sbjct: 249 WQYDGWRCLLFRC--YNEGGGGCGVCQ-AVCPFNKKPNSWIHDV 289
>gnl|CDD|224300 COG1382, GimC, Prefoldin, chaperonin cofactor [Posttranslational
modification, protein turnover, chaperones].
Length = 119
Score = 28.8 bits (65), Expect = 2.6
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
Query: 403 NMLKKKQPKQQQLS-LIESLRKIENEVKE---VLRILGLLPPGA--YSEVKTAFL 451
L + Q QQQL +I +++E ++KE L L L A Y +V +
Sbjct: 10 AQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLV 64
>gnl|CDD|236513 PRK09431, asnB, asparagine synthetase B; Provisional.
Length = 554
Score = 29.9 bits (68), Expect = 2.9
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 9/40 (22%)
Query: 334 YIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEF 373
Y +QT DCEV L+ +QE G D ++ L F
Sbjct: 92 YAFQTGSDCEVILALYQEKGP---------DFLDDLDGMF 122
>gnl|CDD|238955 cd01997, GMP_synthase_C, The C-terminal domain of GMP synthetase.
It contains two subdomains; the ATP pyrophosphatase
domain which closes to the N-termial and the
dimerization domain at C-terminal end. The ATP-PPase is
a twisted, five-stranded parallel beta-sheet sandwiched
between helical layers. It has a signature
nucleotide-binding motif, or P-loop, at the end of the
first-beta strand.The dimerization domain formed by the
C-terminal 115 amino acid for prokaryotic proteins. It
is adjacent to teh ATP-binding site of the ATP-PPase
subdomain. The largest difference between the primary
sequence of prokaryotic and eukaryotic GMP synthetase
map to the dimerization domain.Eukaryotic GMP synthetase
has several large insertions relative to prokaryotes.
Length = 295
Score = 29.4 bits (67), Expect = 3.3
Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 409 QPKQQQLSLIESLRKI-ENEVKEVLRILGL 437
P+ +L LIE LR + ++EV+E+ R LGL
Sbjct: 135 LPEDMKLKLIEPLRDLFKDEVRELGRELGL 164
>gnl|CDD|112953 pfam04163, Tht1, Tht1-like nuclear fusion protein.
Length = 554
Score = 29.7 bits (66), Expect = 3.7
Identities = 27/109 (24%), Positives = 43/109 (39%), Gaps = 22/109 (20%)
Query: 354 KTARINPAAEDCINKLRDEFHARMSDDLN-----TSHILTGAFQDALKFINSS------- 401
+ A N A I L+D+F A + D + + L + Q + F+NS
Sbjct: 287 EFASENAIALSAIGDLKDDFLAFLEDRIKNLIEMSEDSLKESVQRNIDFVNSGFQELEDF 346
Query: 402 -------LNMLKKKQPKQQQLSLIESLR---KIENEVKEVLRILGLLPP 440
L LKK +QQ L E L+ ++ K+ L+ +LP
Sbjct: 347 SIGLKEELGGLKKDLSEQQNLEAEEILQGFNDFLHDSKDHLKTDEILPE 395
>gnl|CDD|224585 COG1671, COG1671, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 150
Score = 28.8 bits (65), Expect = 3.9
Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 19/51 (37%)
Query: 65 DLLYRYLEHLKCEVTYVRNF--------------TD-----VDDKIIRRAN 96
D +YR E + +VT+V NF D DD I+ A
Sbjct: 15 DEIYRVAERMGLKVTFVANFPHRVPPSPEIRTVVVDAGFDAADDWIVNLAE 65
>gnl|CDD|133062 cd06442, DPM1_like, DPM1_like represents putative enzymes similar
to eukaryotic DPM1. Proteins similar to eukaryotic
DPM1, including enzymes from bacteria and archaea; DPM1
is the catalytic subunit of eukaryotic
dolichol-phosphate mannose (DPM) synthase. DPM synthase
is required for synthesis of the
glycosylphosphatidylinositol (GPI) anchor, N-glycan
precursor, protein O-mannose, and C-mannose. In higher
eukaryotes,the enzyme has three subunits, DPM1, DPM2 and
DPM3. DPM is synthesized from dolichol phosphate and
GDP-Man on the cytosolic surface of the ER membrane by
DPM synthase and then is flipped onto the luminal side
and used as a donor substrate. In lower eukaryotes, such
as Saccharomyces cerevisiae and Trypanosoma brucei, DPM
synthase consists of a single component (Dpm1p and
TbDpm1, respectively) that possesses one predicted
transmembrane region near the C terminus for anchoring
to the ER membrane. In contrast, the Dpm1 homologues of
higher eukaryotes, namely fission yeast, fungi, and
animals, have no transmembrane region, suggesting the
existence of adapter molecules for membrane anchoring.
This family also includes bacteria and archaea DPM1_like
enzymes. However, the enzyme structure and mechanism of
function are not well understood. This protein family
belongs to Glycosyltransferase 2 superfamily.
Length = 224
Score = 29.0 bits (66), Expect = 4.1
Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 24/75 (32%)
Query: 88 DDKIIRRANDLGENPLSLSNRY-------CQEYLVDM-ADLQCLPPTYQPRVSDHMEQIK 139
++I R G L + Y + +V M ADL PP E I
Sbjct: 54 RVRLIVRPGKRG-----LGSAYIEGFKAARGDVIVVMDADLS-HPP----------EYIP 97
Query: 140 DMITQIINNDCAYVV 154
+++ + V+
Sbjct: 98 ELLEAQLEGGADLVI 112
>gnl|CDD|233454 TIGR01536, asn_synth_AEB, asparagine synthase
(glutamine-hydrolyzing). This model describes the
glutamine-hydrolysing asparagine synthase. A poorly
conserved C-terminal extension was removed from the
model. Bacterial members of the family tend to have a
long, poorly conserved insert lacking from archaeal and
eukaryotic sequences. Multiple isozymes have been
demonstrated, such as in Bacillus subtilis. Long-branch
members of the phylogenetic tree (which typically were
also second or third candidate members from their
genomes) were removed from the seed alignment and score
below trusted cutoff [Amino acid biosynthesis, Aspartate
family].
Length = 466
Score = 29.6 bits (67), Expect = 4.3
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 9/40 (22%)
Query: 334 YIYQTLQDCEVALSPFQEHGKTARINPAAEDCINKLRDEF 373
Y +QT D EV L ++E G E+C+++L F
Sbjct: 91 YTFQTDSDTEVILHLYEEWG---------EECVDRLDGMF 121
>gnl|CDD|173925 cd02174, CCT, CTP:phosphocholine cytidylyltransferase.
CTP:phosphocholine cytidylyltransferase (CCT) catalyzes
the condensation of CTP and phosphocholine to form
CDP-choline as the rate-limiting and regulatory step in
the CDP-choline pathway. CCT is unique in that its
enzymatic activity is regulated by the extent of its
association with membrane structures. A current model
posts that the elastic stress of the bilayer curvature
is sensed by CCT and this governs the degree of
membrane association, thus providing a mechanism for
both positive and negative regulation of activity.
Length = 150
Score = 28.3 bits (64), Expect = 4.4
Identities = 10/18 (55%), Positives = 11/18 (61%), Gaps = 2/18 (11%)
Query: 43 YVCGVTAYDLSHLGHARA 60
YV G +DL H GHA A
Sbjct: 6 YVDGC--FDLFHYGHANA 21
>gnl|CDD|235582 PRK05729, valS, valyl-tRNA synthetase; Reviewed.
Length = 874
Score = 29.3 bits (67), Expect = 5.9
Identities = 7/11 (63%), Positives = 7/11 (63%)
Query: 279 NNEKMSKSLGN 289
KMSKS GN
Sbjct: 517 QGRKMSKSKGN 527
>gnl|CDD|216047 pfam00656, Peptidase_C14, Caspase domain.
Length = 228
Score = 28.4 bits (64), Expect = 6.1
Identities = 23/116 (19%), Positives = 38/116 (32%), Gaps = 20/116 (17%)
Query: 140 DMITQIINND-CAYVVEG-DVFF-------AVEKSPNYGRLSGQRLENNRAGERVAVDSR 190
D + + N C + +F ++ S E+ E A S+
Sbjct: 90 DALDDVFNGLNCPSLKGKPKLFIIDACRGGPLDDGVKSDSGSSGESESVDDSEA-AGLSK 148
Query: 191 KRNPADFALWKAAKAGEPSWDSPWGPGRPGWHIECSAMSAHYLSSKFDIHGGGIDL 246
PADF + + G+ S+ G G W I+ L + G+DL
Sbjct: 149 IPAPADFLVAYSTTPGQVSYR---GTGSGSWFIQA-------LCQVLREYAPGLDL 194
>gnl|CDD|148159 pfam06385, Baculo_LEF-11, Baculovirus LEF-11 protein. This family
consists of several Baculovirus LEF-11 proteins. The
exact function of this family is unknown although it has
been shown that LEF-11 is required for viral DNA
replication during the infection cycle.
Length = 95
Score = 27.2 bits (61), Expect = 6.1
Identities = 9/64 (14%), Positives = 21/64 (32%), Gaps = 8/64 (12%)
Query: 365 CINKLRDEFHARMSDDLN--TSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLR 422
IN + F D +H+ F +I ++L+ + + +
Sbjct: 14 VINYRKHTF------DTKNVCAHVEDDGFATISDYIRANLDKAFIIVGDCSKKRVAPHRK 67
Query: 423 KIEN 426
++E
Sbjct: 68 RLER 71
>gnl|CDD|220366 pfam09728, Taxilin, Myosin-like coiled-coil protein. Taxilin
contains an extraordinarily long coiled-coil domain in
its C-terminal half and is ubiquitously expressed. It is
a novel binding partner of several syntaxin family
members and is possibly involved in Ca2+-dependent
exocytosis in neuroendocrine cells. Gamma-taxilin,
described as leucine zipper protein Factor Inhibiting
ATF4-mediated Transcription (FIAT), localises to the
nucleus in osteoblasts and dimerises with ATF4 to form
inactive dimers, thus inhibiting ATF4-mediated
transcription.
Length = 309
Score = 28.9 bits (65), Expect = 6.3
Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 367 NKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSLIESLRK 423
L++E AR ++ LT FQ LK I M + P + E LR+
Sbjct: 88 KTLKEENKARSDEEEEKRKELTEKFQSTLKDI--QDQMEEHSNPNHKLCEENEELRE 142
>gnl|CDD|235588 PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed.
Length = 912
Score = 28.9 bits (66), Expect = 6.8
Identities = 8/9 (88%), Positives = 8/9 (88%)
Query: 281 EKMSKSLGN 289
KMSKSLGN
Sbjct: 591 RKMSKSLGN 599
>gnl|CDD|216096 pfam00749, tRNA-synt_1c, tRNA synthetases class I (E and Q),
catalytic domain. Other tRNA synthetase sub-families
are too dissimilar to be included. This family includes
only glutamyl and glutaminyl tRNA synthetases. In some
organisms, a single glutamyl-tRNA synthetase
aminoacylates both tRNA(Glu) and tRNA(Gln).
Length = 314
Score = 28.4 bits (64), Expect = 7.3
Identities = 30/107 (28%), Positives = 43/107 (40%), Gaps = 32/107 (29%)
Query: 54 HLGHARAAVSFDLLYRYLEHLKCEVTYVRNFTDVDDKIIRRANDLGENPLSLSNRYCQEY 113
H+GHAR A L+ YL + +N+ + K I R +D +P R EY
Sbjct: 15 HIGHARTA-----LFNYL--------FAKNY---NGKFILRFDD--TDP----EREKPEY 52
Query: 114 L-VDMADLQCL------PPTYQPRVSDHMEQIKDMITQIINNDCAYV 153
+ DL+ L P YQ SD + ++I AYV
Sbjct: 53 EESILEDLKWLGIKWDEKPYYQ---SDRFDIYYKYAEELIEKGLAYV 96
>gnl|CDD|178768 PLN03229, PLN03229, acetyl-coenzyme A carboxylase carboxyl
transferase subunit alpha; Provisional.
Length = 762
Score = 28.7 bits (64), Expect = 8.0
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 10/76 (13%)
Query: 358 INPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLKKKQPKQQQLSL 417
++P + I KL+DEF+ R+S N +LK+ LN + + ++ S
Sbjct: 505 MHPVLMEKIEKLKDEFNKRLSRAPNYL---------SLKYKLDMLNEFSRAKALSEKKSK 555
Query: 418 IESLRK-IENEVKEVL 432
E L+ I + KEV+
Sbjct: 556 AEKLKAEINKKFKEVM 571
>gnl|CDD|225306 COG2508, COG2508, Regulator of polyketide synthase expression
[Signal transduction mechanisms / Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 421
Score = 28.6 bits (64), Expect = 8.1
Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 2/76 (2%)
Query: 347 SPFQEHGKTARINPAAEDCINKLRDEFHARMSDDLNTSHILTGAFQDALKFINSSLNMLK 406
+ AA + R+ + +L G ++ +FI +L L+
Sbjct: 287 GFRRSLLDALEAFKAAARALEAAGLRAAFRLDKIVYELLLLLGELEELKEFITETLGDLE 346
Query: 407 KKQPKQQQLSLIESLR 422
Q Q L+E+LR
Sbjct: 347 YDQE--QDTELLETLR 360
>gnl|CDD|185675 cd00671, ArgRS_core, catalytic core domain of arginyl-tRNA
synthetases. Arginyl tRNA synthetase (ArgRS) catalytic
core domain. This class I enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate.
There are at least three subgroups of ArgRS. One type
contains both characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding. The second
subtype lacks the KMSKS motif; however, it has a lysine
N-terminal to the HIGH motif, which serves as the
functional counterpart to the second lysine of the
KMSKS motif. A third group, which is found primarily
in archaea and a few bacteria, lacks both the KMSKS
motif and the HIGH loop lysine.
Length = 212
Score = 27.9 bits (63), Expect = 9.8
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 54 HLGHARAAVSFDLLYRYLEHLKCEVT 79
H+GH R A+ D L R LE L +VT
Sbjct: 16 HVGHLRNAIIGDSLARILEFLGYDVT 41
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.135 0.407
Gapped
Lambda K H
0.267 0.0797 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 23,639,651
Number of extensions: 2278690
Number of successful extensions: 2286
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2243
Number of HSP's successfully gapped: 90
Length of query: 464
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 364
Effective length of database: 6,502,202
Effective search space: 2366801528
Effective search space used: 2366801528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.1 bits)