Query 012398
Match_columns 464
No_of_seqs 207 out of 1306
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 02:13:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012398.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012398hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1257 NADP+-dependent malic 100.0 6E-173 1E-177 1339.0 38.0 420 44-464 25-444 (582)
2 PRK13529 malate dehydrogenase; 100.0 1E-168 2E-173 1330.5 40.0 418 44-464 11-437 (563)
3 PTZ00317 NADP-dependent malic 100.0 2E-168 4E-173 1328.0 40.1 420 43-464 12-436 (559)
4 PLN03129 NADP-dependent malic 100.0 2E-168 5E-173 1331.8 40.7 418 47-464 39-456 (581)
5 COG0281 SfcA Malic enzyme [Ene 100.0 8.7E-94 1.9E-98 735.5 22.9 312 83-464 1-318 (432)
6 PRK12861 malic enzyme; Reviewe 100.0 1.2E-86 2.7E-91 727.8 24.3 269 130-464 34-305 (764)
7 PRK12862 malic enzyme; Reviewe 100.0 3E-86 6.5E-91 727.6 24.5 268 130-463 38-309 (763)
8 PRK07232 bifunctional malic en 100.0 1.4E-85 3E-90 719.6 25.0 268 130-463 30-301 (752)
9 PF00390 malic: Malic enzyme, 100.0 3.2E-83 6.9E-88 599.2 8.6 182 114-295 1-182 (182)
10 PF03949 Malic_M: Malic enzyme 100.0 3.7E-58 8E-63 450.3 12.9 158 305-464 1-161 (255)
11 cd00762 NAD_bind_malic_enz NAD 100.0 2.8E-57 6.1E-62 443.7 17.5 158 305-464 1-161 (254)
12 cd05312 NAD_bind_1_malic_enz N 100.0 2.1E-56 4.5E-61 442.8 17.7 158 305-464 1-160 (279)
13 cd05311 NAD_bind_2_malic_enz N 100.0 5.4E-31 1.2E-35 253.7 15.2 139 305-460 1-142 (226)
14 cd05191 NAD_bind_amino_acid_DH 98.9 1.3E-08 2.9E-13 84.1 11.5 86 307-444 1-86 (86)
15 PRK05476 S-adenosyl-L-homocyst 97.6 0.0017 3.6E-08 69.3 15.8 127 297-456 173-309 (425)
16 TIGR01035 hemA glutamyl-tRNA r 97.5 0.00042 9.2E-09 73.0 9.9 117 306-447 158-280 (417)
17 cd00401 AdoHcyase S-adenosyl-L 97.4 0.0026 5.6E-08 67.6 14.0 128 297-458 163-301 (413)
18 cd05213 NAD_bind_Glutamyl_tRNA 97.3 0.0013 2.8E-08 66.7 10.2 136 285-447 139-276 (311)
19 PRK00045 hemA glutamyl-tRNA re 97.3 0.00095 2.1E-08 70.4 9.1 120 307-447 161-283 (423)
20 PLN02477 glutamate dehydrogena 97.3 0.0086 1.9E-07 63.7 16.1 180 251-451 112-318 (410)
21 cd05211 NAD_bind_Glu_Leu_Phe_V 97.3 0.0029 6.3E-08 61.5 11.6 121 308-447 2-131 (217)
22 PRK09414 glutamate dehydrogena 97.2 0.013 2.7E-07 63.1 16.7 180 251-447 138-348 (445)
23 PRK14031 glutamate dehydrogena 97.1 0.021 4.5E-07 61.5 16.6 181 251-447 134-347 (444)
24 PTZ00079 NADP-specific glutama 97.1 0.032 6.9E-07 60.2 18.0 180 251-447 143-357 (454)
25 cd01080 NAD_bind_m-THF_DH_Cycl 97.1 0.0043 9.3E-08 58.3 10.2 89 315-447 30-119 (168)
26 PF01488 Shikimate_DH: Shikima 97.0 0.00048 1E-08 61.5 2.8 101 326-448 9-113 (135)
27 cd01076 NAD_bind_1_Glu_DH NAD( 97.0 0.0049 1.1E-07 60.3 9.8 123 306-447 8-140 (227)
28 PRK14982 acyl-ACP reductase; P 97.0 0.0084 1.8E-07 62.3 12.0 113 308-447 134-249 (340)
29 TIGR00936 ahcY adenosylhomocys 97.0 0.011 2.5E-07 62.7 13.2 128 297-458 156-294 (406)
30 PLN02494 adenosylhomocysteinas 96.9 0.012 2.6E-07 63.8 12.7 130 297-460 215-355 (477)
31 COG0373 HemA Glutamyl-tRNA red 96.9 0.0038 8.3E-08 66.4 8.8 136 285-451 139-281 (414)
32 PRK14030 glutamate dehydrogena 96.8 0.076 1.7E-06 57.2 17.6 180 251-447 134-348 (445)
33 PLN00203 glutamyl-tRNA reducta 96.7 0.0055 1.2E-07 66.9 8.7 121 307-447 243-372 (519)
34 PLN00106 malate dehydrogenase 96.6 0.012 2.6E-07 60.6 10.0 118 314-447 4-138 (323)
35 TIGR02853 spore_dpaA dipicolin 96.6 0.013 2.9E-07 59.1 10.0 125 305-457 127-251 (287)
36 cd01075 NAD_bind_Leu_Phe_Val_D 96.5 0.032 6.9E-07 53.4 11.7 113 307-447 4-119 (200)
37 cd05313 NAD_bind_2_Glu_DH NAD( 96.5 0.052 1.1E-06 54.5 13.3 124 307-447 16-158 (254)
38 PRK14175 bifunctional 5,10-met 96.5 0.017 3.7E-07 58.8 9.9 97 307-447 136-233 (286)
39 PRK14192 bifunctional 5,10-met 96.5 0.022 4.8E-07 57.7 10.6 109 307-459 137-250 (283)
40 PRK08306 dipicolinate synthase 96.4 0.024 5.2E-07 57.4 10.4 105 311-445 134-242 (296)
41 PRK13940 glutamyl-tRNA reducta 96.3 0.013 2.8E-07 62.3 8.4 111 310-447 163-276 (414)
42 cd01078 NAD_bind_H4MPT_DH NADP 96.1 0.035 7.6E-07 51.9 9.3 114 308-447 7-132 (194)
43 PTZ00075 Adenosylhomocysteinas 96.0 0.11 2.4E-06 56.4 13.8 123 297-447 215-344 (476)
44 PRK12549 shikimate 5-dehydroge 95.9 0.032 6.8E-07 56.2 8.3 91 313-420 111-203 (284)
45 TIGR00518 alaDH alanine dehydr 95.8 0.029 6.4E-07 58.5 8.2 101 327-451 165-275 (370)
46 cd05197 GH4_glycoside_hydrolas 95.8 0.022 4.7E-07 60.8 7.2 105 330-447 1-146 (425)
47 PRK05086 malate dehydrogenase; 95.8 0.058 1.3E-06 55.1 9.8 105 330-447 1-121 (312)
48 cd01065 NAD_bind_Shikimate_DH 95.7 0.032 7E-07 49.5 6.8 108 314-447 4-120 (155)
49 cd05212 NAD_bind_m-THF_DH_Cycl 95.7 0.098 2.1E-06 48.0 9.9 90 310-443 9-99 (140)
50 PF00670 AdoHcyase_NAD: S-aden 95.6 0.15 3.2E-06 48.3 10.9 119 306-457 3-121 (162)
51 PF03807 F420_oxidored: NADP o 95.6 0.02 4.4E-07 47.1 4.6 94 331-446 1-96 (96)
52 PF00056 Ldh_1_N: lactate/mala 95.3 0.011 2.4E-07 53.5 2.5 105 330-447 1-121 (141)
53 PTZ00325 malate dehydrogenase; 95.3 0.099 2.1E-06 53.9 9.7 107 327-447 6-128 (321)
54 PRK00676 hemA glutamyl-tRNA re 95.3 0.079 1.7E-06 55.3 8.8 109 307-450 152-267 (338)
55 cd00650 LDH_MDH_like NAD-depen 95.3 0.044 9.5E-07 54.0 6.7 105 332-447 1-122 (263)
56 TIGR01809 Shik-DH-AROM shikima 95.2 0.045 9.8E-07 54.9 6.6 96 314-429 108-210 (282)
57 PRK14191 bifunctional 5,10-met 95.1 0.085 1.8E-06 53.8 8.3 92 309-444 137-229 (285)
58 cd05291 HicDH_like L-2-hydroxy 95.0 0.075 1.6E-06 53.7 7.7 103 331-447 2-120 (306)
59 PF00208 ELFV_dehydrog: Glutam 95.0 0.071 1.5E-06 52.9 7.1 128 304-447 6-151 (244)
60 cd05296 GH4_P_beta_glucosidase 94.8 0.07 1.5E-06 56.9 7.1 107 330-447 1-147 (419)
61 PRK10792 bifunctional 5,10-met 94.7 0.11 2.4E-06 53.0 8.0 93 308-444 138-231 (285)
62 cd01079 NAD_bind_m-THF_DH NAD 94.7 0.21 4.7E-06 48.6 9.5 109 310-441 34-153 (197)
63 TIGR02356 adenyl_thiF thiazole 94.6 0.12 2.5E-06 49.5 7.4 104 325-443 17-143 (202)
64 PRK00066 ldh L-lactate dehydro 94.5 0.095 2E-06 53.6 7.0 115 330-461 7-136 (315)
65 PRK09424 pntA NAD(P) transhydr 94.5 0.19 4.2E-06 55.0 9.7 108 326-454 162-296 (509)
66 cd05298 GH4_GlvA_pagL_like Gly 94.3 0.091 2E-06 56.4 6.6 105 330-447 1-146 (437)
67 cd00704 MDH Malate dehydrogena 94.2 0.24 5.1E-06 51.1 9.1 110 331-447 2-129 (323)
68 PRK14189 bifunctional 5,10-met 94.0 0.2 4.3E-06 51.2 8.1 95 308-446 137-233 (285)
69 PRK14194 bifunctional 5,10-met 93.8 0.38 8.1E-06 49.6 9.6 94 309-446 139-234 (301)
70 PTZ00082 L-lactate dehydrogena 93.8 0.27 5.8E-06 50.6 8.6 105 328-447 5-131 (321)
71 PTZ00117 malate dehydrogenase; 93.8 0.24 5.1E-06 50.7 8.2 105 328-447 4-125 (319)
72 cd01337 MDH_glyoxysomal_mitoch 93.7 0.21 4.5E-06 51.4 7.6 102 331-447 2-120 (310)
73 COG0334 GdhA Glutamate dehydro 93.7 2.5 5.4E-05 45.5 15.6 178 250-447 111-316 (411)
74 PF01210 NAD_Gly3P_dh_N: NAD-d 93.6 0.081 1.7E-06 48.3 4.0 85 331-435 1-93 (157)
75 PRK08223 hypothetical protein; 93.6 0.16 3.5E-06 51.9 6.6 123 288-442 4-150 (287)
76 PLN02928 oxidoreductase family 93.6 0.8 1.7E-05 47.6 11.7 118 307-444 121-262 (347)
77 PRK14176 bifunctional 5,10-met 93.5 0.31 6.8E-06 49.9 8.4 92 308-443 143-235 (287)
78 PRK14178 bifunctional 5,10-met 93.5 0.22 4.7E-06 50.8 7.2 94 307-444 130-224 (279)
79 cd01336 MDH_cytoplasmic_cytoso 93.4 0.54 1.2E-05 48.4 10.1 121 330-460 3-141 (325)
80 PRK08762 molybdopterin biosynt 93.3 0.17 3.7E-06 52.7 6.4 102 325-442 131-256 (376)
81 PRK06223 malate dehydrogenase; 93.3 0.23 5E-06 49.8 7.1 97 330-447 3-122 (307)
82 PRK00257 erythronate-4-phospha 93.3 0.72 1.6E-05 48.8 10.9 53 308-372 95-147 (381)
83 PRK08328 hypothetical protein; 93.3 0.053 1.2E-06 53.0 2.4 120 291-443 7-150 (231)
84 PRK12475 thiamine/molybdopteri 93.2 0.22 4.8E-06 51.6 7.0 103 325-442 20-147 (338)
85 TIGR01763 MalateDH_bact malate 93.2 0.17 3.6E-06 51.6 5.9 114 330-461 2-132 (305)
86 PRK08644 thiamine biosynthesis 93.2 0.21 4.5E-06 48.4 6.3 38 325-373 24-61 (212)
87 cd00757 ThiF_MoeB_HesA_family 93.1 0.37 8E-06 46.7 7.9 103 325-443 17-143 (228)
88 PRK15076 alpha-galactosidase; 93.1 0.27 5.9E-06 52.6 7.6 106 330-447 2-150 (431)
89 PRK05600 thiamine biosynthesis 93.0 0.31 6.7E-06 51.2 7.8 103 325-442 37-162 (370)
90 PRK05442 malate dehydrogenase; 92.9 0.36 7.9E-06 49.8 8.0 108 331-447 6-133 (326)
91 PRK12749 quinate/shikimate deh 92.9 0.27 5.8E-06 49.8 6.9 50 313-373 108-157 (288)
92 TIGR02992 ectoine_eutC ectoine 92.9 0.52 1.1E-05 48.3 9.0 115 315-456 117-237 (326)
93 PF02826 2-Hacid_dh_C: D-isome 92.9 0.39 8.4E-06 44.8 7.4 108 319-458 26-137 (178)
94 PRK08605 D-lactate dehydrogena 92.9 0.53 1.1E-05 48.5 9.1 93 324-445 141-237 (332)
95 PRK08293 3-hydroxybutyryl-CoA 92.8 0.2 4.3E-06 49.9 5.8 32 330-373 4-35 (287)
96 TIGR02354 thiF_fam2 thiamine b 92.6 0.28 6.1E-06 47.1 6.2 38 325-373 17-54 (200)
97 TIGR02355 moeB molybdopterin s 92.5 0.41 9E-06 47.2 7.4 104 325-443 20-146 (240)
98 PRK14190 bifunctional 5,10-met 92.5 0.49 1.1E-05 48.4 8.1 93 308-444 137-230 (284)
99 PF02056 Glyco_hydro_4: Family 92.5 0.23 5E-06 47.7 5.5 109 331-453 1-151 (183)
100 PRK15438 erythronate-4-phospha 92.5 1.3 2.7E-05 47.0 11.3 54 307-372 94-147 (378)
101 PRK14184 bifunctional 5,10-met 92.4 0.42 9E-06 48.9 7.5 97 308-444 136-233 (286)
102 cd01338 MDH_choloroplast_like 92.4 0.78 1.7E-05 47.3 9.5 111 330-447 3-131 (322)
103 TIGR01772 MDH_euk_gproteo mala 92.4 0.85 1.8E-05 46.9 9.8 102 331-447 1-119 (312)
104 PRK14183 bifunctional 5,10-met 92.3 0.56 1.2E-05 47.9 8.2 93 307-443 135-228 (281)
105 COG0111 SerA Phosphoglycerate 92.2 1.1 2.4E-05 46.3 10.4 100 308-432 103-224 (324)
106 cd05297 GH4_alpha_glucosidase_ 92.2 0.43 9.4E-06 50.7 7.6 104 330-447 1-148 (423)
107 PF02882 THF_DHG_CYH_C: Tetrah 92.1 0.63 1.4E-05 43.7 7.8 85 308-430 15-100 (160)
108 PRK14027 quinate/shikimate deh 92.1 0.31 6.7E-06 49.3 6.2 49 314-373 112-160 (283)
109 PRK14177 bifunctional 5,10-met 92.1 0.67 1.4E-05 47.4 8.5 90 309-442 139-229 (284)
110 TIGR01759 MalateDH-SF1 malate 92.0 0.95 2.1E-05 46.8 9.5 122 330-461 4-143 (323)
111 cd05290 LDH_3 A subgroup of L- 91.9 0.46 1E-05 48.6 7.2 102 331-447 1-122 (307)
112 PRK05690 molybdopterin biosynt 91.9 0.51 1.1E-05 46.6 7.2 105 325-445 28-156 (245)
113 PRK14172 bifunctional 5,10-met 91.8 1.1 2.3E-05 45.9 9.5 91 309-443 138-229 (278)
114 PRK14179 bifunctional 5,10-met 91.6 0.68 1.5E-05 47.4 7.9 93 308-444 137-230 (284)
115 PLN02516 methylenetetrahydrofo 91.4 0.85 1.8E-05 47.0 8.5 92 307-442 145-237 (299)
116 PRK14851 hypothetical protein; 91.4 0.89 1.9E-05 51.6 9.4 122 325-463 39-194 (679)
117 PRK12548 shikimate 5-dehydroge 91.4 0.44 9.5E-06 48.0 6.3 50 313-373 110-159 (289)
118 PRK14619 NAD(P)H-dependent gly 91.3 1.6 3.4E-05 44.1 10.2 33 329-373 4-36 (308)
119 PRK07634 pyrroline-5-carboxyla 91.3 0.59 1.3E-05 44.8 6.8 100 328-447 3-102 (245)
120 PRK14188 bifunctional 5,10-met 91.2 0.67 1.4E-05 47.6 7.4 92 309-444 138-230 (296)
121 PRK14171 bifunctional 5,10-met 91.2 0.94 2E-05 46.5 8.4 95 306-444 136-231 (288)
122 cd01487 E1_ThiF_like E1_ThiF_l 91.1 0.89 1.9E-05 42.6 7.7 97 331-442 1-120 (174)
123 PRK07688 thiamine/molybdopteri 91.0 0.28 6.1E-06 50.8 4.6 104 325-443 20-148 (339)
124 PRK14174 bifunctional 5,10-met 91.0 0.79 1.7E-05 47.1 7.7 96 309-444 139-235 (295)
125 PRK00258 aroE shikimate 5-dehy 90.9 0.59 1.3E-05 46.6 6.6 88 313-420 106-196 (278)
126 cd05294 LDH-like_MDH_nadp A la 90.8 1.5 3.2E-05 44.8 9.5 103 330-447 1-124 (309)
127 PRK14168 bifunctional 5,10-met 90.8 1.1 2.3E-05 46.3 8.4 98 307-444 139-237 (297)
128 PRK14193 bifunctional 5,10-met 90.7 1 2.2E-05 46.1 8.2 93 309-443 138-231 (284)
129 PRK14187 bifunctional 5,10-met 90.7 1.1 2.4E-05 46.0 8.5 92 308-443 139-231 (294)
130 COG1486 CelF Alpha-galactosida 90.7 0.27 5.7E-06 53.1 4.1 119 328-461 2-160 (442)
131 TIGR01915 npdG NADPH-dependent 90.6 0.74 1.6E-05 44.1 6.8 96 331-449 2-106 (219)
132 TIGR00561 pntA NAD(P) transhyd 90.5 0.61 1.3E-05 51.3 6.8 184 235-453 80-294 (511)
133 PF00899 ThiF: ThiF family; I 90.5 0.47 1E-05 41.9 4.9 103 328-445 1-126 (135)
134 PRK14170 bifunctional 5,10-met 90.5 1.2 2.5E-05 45.7 8.4 93 308-444 136-229 (284)
135 COG0169 AroE Shikimate 5-dehyd 90.3 0.62 1.3E-05 47.5 6.2 47 315-372 110-158 (283)
136 PRK14166 bifunctional 5,10-met 90.2 1.3 2.8E-05 45.4 8.4 95 306-444 134-229 (282)
137 PRK05597 molybdopterin biosynt 90.2 0.84 1.8E-05 47.5 7.2 104 325-443 24-150 (355)
138 TIGR01758 MDH_euk_cyt malate d 90.1 1.7 3.8E-05 44.8 9.3 121 331-461 1-139 (324)
139 PRK08291 ectoine utilization p 89.9 2.5 5.4E-05 43.4 10.3 115 315-456 120-240 (330)
140 cd05293 LDH_1 A subgroup of L- 89.7 1 2.3E-05 46.1 7.4 102 330-447 4-123 (312)
141 PTZ00345 glycerol-3-phosphate 89.7 1.5 3.2E-05 46.2 8.7 25 326-350 8-32 (365)
142 PRK08374 homoserine dehydrogen 89.7 2.1 4.6E-05 44.3 9.6 103 330-441 3-120 (336)
143 cd01339 LDH-like_MDH L-lactate 89.6 0.8 1.7E-05 46.0 6.4 101 332-447 1-118 (300)
144 PRK07574 formate dehydrogenase 89.3 4 8.6E-05 43.4 11.5 94 324-444 187-284 (385)
145 PRK00094 gpsA NAD(P)H-dependen 89.3 0.7 1.5E-05 46.0 5.6 101 331-447 3-108 (325)
146 TIGR00872 gnd_rel 6-phosphoglu 89.3 0.88 1.9E-05 45.8 6.4 98 331-455 2-102 (298)
147 PLN02306 hydroxypyruvate reduc 89.2 3.5 7.6E-05 43.8 11.0 127 296-444 108-272 (386)
148 PRK07411 hypothetical protein; 88.9 0.97 2.1E-05 47.7 6.7 103 325-442 34-159 (390)
149 PRK14185 bifunctional 5,10-met 88.9 1.9 4.1E-05 44.4 8.5 94 309-442 137-231 (293)
150 PRK06129 3-hydroxyacyl-CoA deh 88.8 0.43 9.3E-06 48.1 3.8 32 330-373 3-34 (308)
151 PRK07878 molybdopterin biosynt 88.8 1.2 2.6E-05 47.0 7.2 103 325-442 38-163 (392)
152 COG0039 Mdh Malate/lactate deh 88.7 1.2 2.7E-05 46.1 7.1 103 330-447 1-121 (313)
153 PRK02842 light-independent pro 88.6 4 8.6E-05 43.4 11.1 117 260-418 248-369 (427)
154 PRK14169 bifunctional 5,10-met 88.5 2.1 4.5E-05 43.8 8.5 92 307-442 134-226 (282)
155 PF01262 AlaDh_PNT_C: Alanine 88.5 0.16 3.6E-06 46.8 0.5 90 327-432 18-130 (168)
156 PRK09260 3-hydroxybutyryl-CoA 88.4 0.46 9.9E-06 47.3 3.7 32 330-373 2-33 (288)
157 PF02737 3HCDH_N: 3-hydroxyacy 88.3 0.24 5.2E-06 46.6 1.5 31 331-373 1-31 (180)
158 PRK13243 glyoxylate reductase; 88.2 5.6 0.00012 41.1 11.5 92 324-444 145-240 (333)
159 PRK06141 ornithine cyclodeamin 88.1 2.5 5.5E-05 43.1 8.8 105 327-456 123-232 (314)
160 PRK14173 bifunctional 5,10-met 88.0 2.2 4.8E-05 43.8 8.3 91 309-443 135-226 (287)
161 PRK14618 NAD(P)H-dependent gly 87.7 0.85 1.8E-05 46.2 5.2 95 330-447 5-107 (328)
162 PRK06522 2-dehydropantoate 2-r 87.7 1.6 3.5E-05 42.9 7.0 100 331-447 2-103 (304)
163 PRK14180 bifunctional 5,10-met 87.7 2.4 5.2E-05 43.4 8.3 94 306-443 135-229 (282)
164 PRK12921 2-dehydropantoate 2-r 87.6 1.3 2.7E-05 43.8 6.2 101 331-448 2-106 (305)
165 PRK14181 bifunctional 5,10-met 87.6 2.8 6E-05 43.1 8.7 98 307-444 131-229 (287)
166 PRK12550 shikimate 5-dehydroge 87.6 1.3 2.7E-05 44.8 6.2 48 314-373 108-155 (272)
167 PRK06130 3-hydroxybutyryl-CoA 87.5 1.6 3.4E-05 43.8 6.8 31 330-372 5-35 (311)
168 PLN02616 tetrahydrofolate dehy 87.4 2.3 4.9E-05 45.1 8.2 91 308-442 210-301 (364)
169 COG0686 Ald Alanine dehydrogen 87.2 1 2.2E-05 47.2 5.3 105 327-455 166-289 (371)
170 PRK06436 glycerate dehydrogena 87.1 5.7 0.00012 40.7 10.7 38 324-373 117-154 (303)
171 PRK14167 bifunctional 5,10-met 87.1 2.9 6.2E-05 43.2 8.5 96 309-444 137-233 (297)
172 PRK08410 2-hydroxyacid dehydro 87.1 6.2 0.00014 40.4 11.0 115 296-442 85-230 (311)
173 KOG0029 Amine oxidase [Seconda 87.0 0.34 7.4E-06 52.9 2.0 37 327-366 13-49 (501)
174 PRK07680 late competence prote 87.0 1.6 3.4E-05 43.2 6.4 97 331-447 2-99 (273)
175 PLN02602 lactate dehydrogenase 86.9 2.4 5.2E-05 44.4 8.0 102 330-447 38-157 (350)
176 PRK14182 bifunctional 5,10-met 86.9 3 6.6E-05 42.7 8.5 90 309-442 137-227 (282)
177 TIGR03140 AhpF alkyl hydropero 86.9 1 2.2E-05 48.7 5.5 83 265-350 140-233 (515)
178 PRK15317 alkyl hydroperoxide r 86.8 1 2.2E-05 48.7 5.4 74 277-350 148-232 (517)
179 cd05292 LDH_2 A subgroup of L- 86.5 2.3 4.9E-05 43.3 7.4 113 331-460 2-129 (308)
180 TIGR01408 Ube1 ubiquitin-activ 86.2 0.34 7.4E-06 57.1 1.6 43 325-373 415-457 (1008)
181 PF07992 Pyr_redox_2: Pyridine 86.2 1.2 2.5E-05 40.6 4.7 32 331-374 1-32 (201)
182 PRK09880 L-idonate 5-dehydroge 86.1 9.7 0.00021 38.3 11.7 47 314-372 156-202 (343)
183 PRK12480 D-lactate dehydrogena 86.1 3.4 7.3E-05 42.7 8.5 38 324-373 141-178 (330)
184 PRK11880 pyrroline-5-carboxyla 85.8 2.2 4.8E-05 41.6 6.7 35 330-373 3-37 (267)
185 cd01485 E1-1_like Ubiquitin ac 85.6 0.75 1.6E-05 44.0 3.3 39 325-374 15-53 (198)
186 PRK14186 bifunctional 5,10-met 85.6 3.9 8.6E-05 42.2 8.7 91 309-443 138-229 (297)
187 PRK07066 3-hydroxybutyryl-CoA 85.4 2.4 5.3E-05 43.9 7.1 31 330-372 8-38 (321)
188 PRK06487 glycerate dehydrogena 85.3 7.1 0.00015 40.1 10.4 83 325-441 144-230 (317)
189 PRK15469 ghrA bifunctional gly 85.2 7.4 0.00016 40.0 10.5 37 325-373 132-168 (312)
190 PRK12439 NAD(P)H-dependent gly 85.2 1.4 2.9E-05 45.4 5.1 21 330-350 8-28 (341)
191 KOG0685 Flavin-containing amin 85.0 0.42 9.2E-06 52.0 1.4 26 325-350 17-42 (498)
192 PRK11790 D-3-phosphoglycerate 85.0 12 0.00026 39.9 12.2 67 295-373 96-183 (409)
193 PRK15116 sulfur acceptor prote 84.9 2 4.4E-05 43.4 6.1 41 325-376 26-66 (268)
194 PLN02897 tetrahydrofolate dehy 84.6 3.8 8.2E-05 43.2 8.1 92 308-443 193-285 (345)
195 KOG1495 Lactate dehydrogenase 84.2 3.4 7.3E-05 42.7 7.3 108 325-447 16-140 (332)
196 PRK15409 bifunctional glyoxyla 84.2 9.3 0.0002 39.4 10.7 26 324-349 140-165 (323)
197 PRK14620 NAD(P)H-dependent gly 84.2 2.3 5E-05 42.9 6.2 31 331-373 2-32 (326)
198 cd01492 Aos1_SUMO Ubiquitin ac 84.1 0.87 1.9E-05 43.5 3.0 39 325-374 17-55 (197)
199 PRK09599 6-phosphogluconate de 84.1 6.4 0.00014 39.6 9.3 93 331-447 2-97 (301)
200 TIGR00507 aroE shikimate 5-deh 84.0 2.5 5.5E-05 41.9 6.3 49 313-373 101-149 (270)
201 TIGR01771 L-LDH-NAD L-lactate 83.9 2.5 5.4E-05 43.1 6.3 102 334-447 1-116 (299)
202 TIGR02371 ala_DH_arch alanine 83.8 6.1 0.00013 40.6 9.2 104 328-456 127-235 (325)
203 PRK07679 pyrroline-5-carboxyla 83.5 7.5 0.00016 38.6 9.4 36 329-372 3-38 (279)
204 PRK13581 D-3-phosphoglycerate 83.5 8.9 0.00019 42.1 10.7 66 296-373 86-172 (526)
205 PRK09310 aroDE bifunctional 3- 83.2 2.5 5.4E-05 45.8 6.3 48 313-372 316-363 (477)
206 PLN00112 malate dehydrogenase 82.9 4.5 9.7E-05 43.9 8.0 114 329-447 100-229 (444)
207 PLN03139 formate dehydrogenase 82.7 12 0.00026 39.9 11.0 94 324-444 194-291 (386)
208 PRK07340 ornithine cyclodeamin 82.6 11 0.00024 38.4 10.4 104 327-456 123-230 (304)
209 COG0345 ProC Pyrroline-5-carbo 82.4 6.6 0.00014 39.9 8.5 35 330-373 2-37 (266)
210 cd00755 YgdL_like Family of ac 82.3 1.5 3.3E-05 43.2 4.0 106 325-444 7-135 (231)
211 TIGR03376 glycerol3P_DH glycer 82.0 2.8 6.2E-05 43.7 6.0 20 331-350 1-20 (342)
212 cd01483 E1_enzyme_family Super 82.0 1.9 4.1E-05 38.3 4.1 101 331-446 1-124 (143)
213 TIGR01327 PGDH D-3-phosphoglyc 81.9 9.8 0.00021 41.8 10.3 66 296-373 84-170 (525)
214 PRK06407 ornithine cyclodeamin 81.9 7.6 0.00016 39.7 8.9 104 328-456 116-225 (301)
215 cd00300 LDH_like L-lactate deh 81.8 4.2 9.2E-05 41.2 7.0 102 332-447 1-118 (300)
216 PRK06035 3-hydroxyacyl-CoA deh 81.0 3.1 6.8E-05 41.5 5.7 32 330-373 4-35 (291)
217 PF01113 DapB_N: Dihydrodipico 81.0 3.4 7.4E-05 36.5 5.3 35 330-374 1-36 (124)
218 TIGR01381 E1_like_apg7 E1-like 81.0 1.6 3.4E-05 49.5 3.8 40 325-375 334-373 (664)
219 PRK08618 ornithine cyclodeamin 80.9 18 0.00038 37.1 11.2 102 328-455 126-233 (325)
220 cd08237 ribitol-5-phosphate_DH 80.8 30 0.00065 35.0 12.7 35 328-372 163-197 (341)
221 COG0190 FolD 5,10-methylene-te 80.6 6.5 0.00014 40.4 7.8 123 275-441 92-225 (283)
222 TIGR03366 HpnZ_proposed putati 80.5 11 0.00023 37.0 9.1 47 314-372 107-153 (280)
223 PRK06823 ornithine cyclodeamin 80.2 10 0.00023 39.0 9.3 104 328-456 127-235 (315)
224 COG5322 Predicted dehydrogenas 80.1 2.2 4.7E-05 44.1 4.2 45 306-350 144-189 (351)
225 PLN02819 lysine-ketoglutarate 80.0 9.2 0.0002 45.7 9.9 25 327-351 201-225 (1042)
226 PRK08229 2-dehydropantoate 2-r 80.0 3.5 7.7E-05 41.6 5.8 103 330-449 3-112 (341)
227 PRK07530 3-hydroxybutyryl-CoA 80.0 4.1 8.9E-05 40.6 6.1 32 330-373 5-36 (292)
228 PF00070 Pyr_redox: Pyridine n 79.8 2.9 6.3E-05 33.6 4.1 35 331-377 1-35 (80)
229 PRK06153 hypothetical protein; 79.6 2.2 4.8E-05 45.6 4.3 38 325-373 172-209 (393)
230 PF01494 FAD_binding_3: FAD bi 79.1 2.6 5.7E-05 41.0 4.4 35 330-376 2-36 (356)
231 TIGR02279 PaaC-3OHAcCoADH 3-hy 79.0 6.5 0.00014 43.1 7.7 34 328-373 4-37 (503)
232 PF13738 Pyr_redox_3: Pyridine 78.9 2.6 5.7E-05 38.5 4.1 30 333-373 1-30 (203)
233 PRK07502 cyclohexadienyl dehyd 78.9 10 0.00022 38.1 8.6 34 330-373 7-40 (307)
234 PF03446 NAD_binding_2: NAD bi 78.9 2.1 4.7E-05 39.1 3.5 92 330-447 2-97 (163)
235 PTZ00142 6-phosphogluconate de 78.3 4.4 9.6E-05 44.1 6.2 98 330-447 2-104 (470)
236 COG1052 LdhA Lactate dehydroge 78.2 15 0.00032 38.3 9.7 90 322-441 139-233 (324)
237 COG0240 GpsA Glycerol-3-phosph 78.1 5.2 0.00011 41.9 6.4 82 330-432 2-92 (329)
238 PRK06270 homoserine dehydrogen 78.1 19 0.00042 37.3 10.5 105 330-441 3-123 (341)
239 PRK07819 3-hydroxybutyryl-CoA 77.1 3.5 7.5E-05 41.5 4.7 22 330-351 6-27 (286)
240 KOG0069 Glyoxylate/hydroxypyru 76.9 19 0.00042 37.9 10.1 109 307-444 120-253 (336)
241 PRK06932 glycerate dehydrogena 76.8 12 0.00027 38.3 8.6 87 324-443 142-232 (314)
242 PRK07231 fabG 3-ketoacyl-(acyl 76.8 6.5 0.00014 36.8 6.2 36 326-373 2-38 (251)
243 PLN02520 bifunctional 3-dehydr 76.7 5.4 0.00012 43.9 6.3 48 314-373 354-411 (529)
244 PLN02527 aspartate carbamoyltr 76.5 98 0.0021 31.9 17.2 171 260-456 86-276 (306)
245 PRK09754 phenylpropionate diox 76.3 3.8 8.3E-05 42.4 4.9 36 328-373 2-37 (396)
246 PRK07531 bifunctional 3-hydrox 75.9 4.5 9.8E-05 43.9 5.4 31 330-372 5-35 (495)
247 PRK12490 6-phosphogluconate de 75.9 17 0.00036 36.7 9.1 93 331-447 2-97 (299)
248 PLN02688 pyrroline-5-carboxyla 75.8 13 0.00028 36.2 8.1 34 331-372 2-36 (266)
249 PRK06928 pyrroline-5-carboxyla 75.7 13 0.00027 37.2 8.2 35 330-373 2-37 (277)
250 PRK07877 hypothetical protein; 75.6 8.5 0.00018 44.3 7.7 105 325-444 103-229 (722)
251 COG2423 Predicted ornithine cy 75.5 13 0.00029 38.8 8.5 121 312-458 115-240 (330)
252 cd01491 Ube1_repeat1 Ubiquitin 75.2 2.7 5.9E-05 42.9 3.4 38 325-373 15-52 (286)
253 PRK06046 alanine dehydrogenase 75.0 20 0.00043 36.9 9.5 103 328-456 128-236 (326)
254 PRK01713 ornithine carbamoyltr 74.9 23 0.00051 36.9 10.1 138 260-417 91-233 (334)
255 TIGR01292 TRX_reduct thioredox 74.7 3.6 7.8E-05 39.6 3.9 31 331-373 2-32 (300)
256 PLN02545 3-hydroxybutyryl-CoA 74.6 9.5 0.0002 38.1 7.0 32 330-373 5-36 (295)
257 TIGR00873 gnd 6-phosphoglucona 74.6 8.8 0.00019 41.7 7.2 95 331-445 1-99 (467)
258 PRK06476 pyrroline-5-carboxyla 74.1 15 0.00033 35.9 8.2 33 331-372 2-34 (258)
259 TIGR03693 ocin_ThiF_like putat 74.1 16 0.00036 41.4 9.2 152 254-440 68-235 (637)
260 TIGR00465 ilvC ketol-acid redu 73.6 14 0.00031 38.1 8.1 24 327-350 1-24 (314)
261 TIGR02622 CDP_4_6_dhtase CDP-g 73.2 10 0.00022 38.3 6.9 106 327-444 2-127 (349)
262 PTZ00431 pyrroline carboxylate 73.1 14 0.00031 36.4 7.8 103 328-447 2-116 (260)
263 PF05834 Lycopene_cycl: Lycope 72.6 4.7 0.0001 41.7 4.4 35 332-376 2-36 (374)
264 PRK11730 fadB multifunctional 72.4 8.7 0.00019 43.8 6.8 41 406-448 416-456 (715)
265 cd01484 E1-2_like Ubiquitin ac 72.2 5.1 0.00011 39.7 4.3 99 331-444 1-124 (234)
266 TIGR02028 ChlP geranylgeranyl 71.8 4.4 9.6E-05 42.3 4.0 20 331-350 2-21 (398)
267 PRK05479 ketol-acid reductoiso 71.6 17 0.00036 38.1 8.1 25 326-350 14-38 (330)
268 cd01486 Apg7 Apg7 is an E1-lik 71.3 5.3 0.00012 41.5 4.4 32 331-373 1-32 (307)
269 PLN02172 flavin-containing mon 70.9 6.4 0.00014 42.4 5.1 25 326-350 7-31 (461)
270 TIGR02023 BchP-ChlP geranylger 70.8 4.9 0.00011 41.4 4.1 20 331-350 2-21 (388)
271 PF03447 NAD_binding_3: Homose 70.4 11 0.00024 32.3 5.5 88 336-441 1-88 (117)
272 PRK11883 protoporphyrinogen ox 70.3 2.9 6.2E-05 43.2 2.2 22 330-351 1-22 (451)
273 PF13454 NAD_binding_9: FAD-NA 70.2 4.8 0.0001 36.6 3.4 36 333-375 1-36 (156)
274 PRK14852 hypothetical protein; 70.0 19 0.00042 42.8 9.0 119 325-462 328-482 (989)
275 PRK11154 fadJ multifunctional 69.9 25 0.00055 40.1 9.8 41 406-448 413-453 (708)
276 PRK15181 Vi polysaccharide bio 69.6 19 0.00042 36.5 8.0 105 323-444 9-141 (348)
277 TIGR03169 Nterm_to_SelD pyridi 69.5 3.2 7E-05 42.0 2.4 37 331-376 1-37 (364)
278 KOG2337 Ubiquitin activating E 69.4 4.1 8.9E-05 45.3 3.2 36 327-373 338-373 (669)
279 cd01488 Uba3_RUB Ubiquitin act 69.3 6.1 0.00013 40.6 4.3 32 331-373 1-32 (291)
280 cd00377 ICL_PEPM Members of th 69.2 1.2E+02 0.0027 30.0 14.9 66 131-232 11-78 (243)
281 PRK06847 hypothetical protein; 69.1 6.2 0.00013 39.8 4.3 22 329-350 4-25 (375)
282 PRK06718 precorrin-2 dehydroge 68.8 7 0.00015 37.6 4.4 35 326-372 7-41 (202)
283 PRK12429 3-hydroxybutyrate deh 68.6 26 0.00057 32.9 8.2 35 327-373 2-37 (258)
284 PRK09564 coenzyme A disulfide 68.3 6.9 0.00015 40.9 4.6 36 330-375 1-36 (444)
285 COG0578 GlpA Glycerol-3-phosph 68.2 18 0.00039 40.3 7.8 88 328-445 11-102 (532)
286 PRK06719 precorrin-2 dehydroge 68.1 7.7 0.00017 35.9 4.3 26 326-351 10-35 (157)
287 TIGR01214 rmlD dTDP-4-dehydror 68.0 22 0.00048 34.3 7.7 60 331-420 1-61 (287)
288 PRK07589 ornithine cyclodeamin 67.8 26 0.00057 36.7 8.7 104 328-456 128-238 (346)
289 COG0476 ThiF Dinucleotide-util 67.6 7 0.00015 38.3 4.2 39 324-373 25-63 (254)
290 PRK08163 salicylate hydroxylas 67.4 6.8 0.00015 39.9 4.2 22 329-350 4-25 (396)
291 PF02423 OCD_Mu_crystall: Orni 67.1 7.1 0.00015 39.9 4.3 103 329-456 128-237 (313)
292 PRK12409 D-amino acid dehydrog 66.9 7.1 0.00015 40.2 4.3 33 330-374 2-34 (410)
293 PRK06184 hypothetical protein; 66.9 7.1 0.00015 41.8 4.4 34 328-373 2-35 (502)
294 PRK07236 hypothetical protein; 66.8 8.1 0.00018 39.6 4.7 24 327-350 4-27 (386)
295 PRK13512 coenzyme A disulfide 66.7 5.5 0.00012 42.1 3.5 33 331-373 3-35 (438)
296 TIGR02082 metH 5-methyltetrahy 66.7 64 0.0014 39.4 12.5 119 262-423 426-556 (1178)
297 PRK06249 2-dehydropantoate 2-r 66.6 15 0.00034 37.0 6.6 24 328-351 4-27 (313)
298 KOG2304 3-hydroxyacyl-CoA dehy 66.6 5 0.00011 40.7 2.9 33 329-373 11-43 (298)
299 PF01266 DAO: FAD dependent ox 66.4 10 0.00023 36.9 5.1 33 331-375 1-33 (358)
300 TIGR01757 Malate-DH_plant mala 66.2 28 0.0006 37.3 8.6 110 329-447 44-173 (387)
301 PRK07364 2-octaprenyl-6-methox 65.9 6.8 0.00015 40.2 3.9 22 329-350 18-39 (415)
302 PRK04176 ribulose-1,5-biphosph 65.9 7.5 0.00016 38.6 4.1 33 329-373 25-57 (257)
303 COG0644 FixC Dehydrogenases (f 65.7 8 0.00017 40.3 4.4 37 330-378 4-40 (396)
304 COG0499 SAM1 S-adenosylhomocys 65.6 27 0.00059 37.6 8.2 126 303-462 186-316 (420)
305 cd01489 Uba2_SUMO Ubiquitin ac 65.5 8.7 0.00019 39.8 4.6 99 331-444 1-123 (312)
306 PRK14806 bifunctional cyclohex 65.4 19 0.00042 40.6 7.7 34 330-373 4-37 (735)
307 TIGR01790 carotene-cycl lycope 65.3 7.4 0.00016 39.6 4.0 19 332-350 2-20 (388)
308 PRK08507 prephenate dehydrogen 65.3 37 0.00081 33.6 8.8 33 331-373 2-34 (275)
309 PRK12491 pyrroline-5-carboxyla 65.2 16 0.00034 36.7 6.3 35 330-372 3-37 (272)
310 PF13450 NAD_binding_8: NAD(P) 65.1 9.5 0.00021 30.4 3.8 31 334-376 1-31 (68)
311 PRK12771 putative glutamate sy 65.0 13 0.00028 40.8 6.0 36 326-373 134-169 (564)
312 PF00743 FMO-like: Flavin-bind 64.9 8.7 0.00019 42.4 4.7 21 330-350 2-22 (531)
313 COG0569 TrkA K+ transport syst 64.6 10 0.00022 37.1 4.6 95 330-447 1-104 (225)
314 TIGR01470 cysG_Nterm siroheme 64.3 9.6 0.00021 36.8 4.4 36 326-373 6-41 (205)
315 COG1179 Dinucleotide-utilizing 64.3 13 0.00027 38.0 5.3 41 326-377 27-67 (263)
316 PF03435 Saccharop_dh: Sacchar 64.3 3.5 7.5E-05 42.6 1.4 84 332-433 1-89 (386)
317 PRK07233 hypothetical protein; 64.2 8.5 0.00018 39.3 4.2 31 331-373 1-31 (434)
318 PRK11199 tyrA bifunctional cho 64.2 25 0.00055 36.9 7.8 85 329-438 98-192 (374)
319 PLN02268 probable polyamine ox 64.0 2.6 5.6E-05 43.9 0.5 20 331-350 2-21 (435)
320 PRK06475 salicylate hydroxylas 64.0 7.7 0.00017 40.1 3.9 21 330-350 3-23 (400)
321 PRK05732 2-octaprenyl-6-methox 63.7 10 0.00022 38.6 4.6 36 329-373 3-38 (395)
322 COG2072 TrkA Predicted flavopr 63.7 8.7 0.00019 41.2 4.4 36 328-374 7-42 (443)
323 TIGR02032 GG-red-SF geranylger 63.6 11 0.00023 36.1 4.5 32 331-374 2-33 (295)
324 PRK09126 hypothetical protein; 63.6 8.7 0.00019 39.1 4.1 22 329-350 3-24 (392)
325 PRK12769 putative oxidoreducta 63.5 9.2 0.0002 42.8 4.6 35 327-373 325-359 (654)
326 PRK09490 metH B12-dependent me 63.2 41 0.00089 41.1 10.1 119 262-423 442-572 (1229)
327 PRK10886 DnaA initiator-associ 63.0 32 0.00069 33.2 7.7 104 327-446 39-145 (196)
328 KOG2012 Ubiquitin activating e 62.8 3.2 7E-05 48.2 0.9 92 292-414 411-507 (1013)
329 PRK06753 hypothetical protein; 62.4 9.4 0.0002 38.6 4.1 20 331-350 2-21 (373)
330 PRK09987 dTDP-4-dehydrorhamnos 62.4 33 0.00071 34.1 7.9 86 331-444 2-104 (299)
331 TIGR01285 nifN nitrogenase mol 62.3 12 0.00027 40.0 5.2 97 317-440 299-395 (432)
332 PRK12810 gltD glutamate syntha 62.3 11 0.00023 40.5 4.7 34 328-373 142-175 (471)
333 PRK07045 putative monooxygenas 62.3 9.7 0.00021 38.9 4.2 21 330-350 6-26 (388)
334 TIGR01505 tartro_sem_red 2-hyd 62.2 32 0.00069 34.2 7.7 31 331-373 1-31 (291)
335 PTZ00318 NADH dehydrogenase-li 62.1 8.3 0.00018 40.6 3.8 37 326-374 7-43 (424)
336 KOG2711 Glycerol-3-phosphate d 61.8 30 0.00065 36.9 7.7 96 330-435 22-129 (372)
337 PRK12828 short chain dehydroge 61.8 16 0.00036 33.6 5.3 36 326-373 4-40 (239)
338 PF01408 GFO_IDH_MocA: Oxidore 61.6 13 0.00028 31.4 4.2 91 330-441 1-91 (120)
339 PLN00093 geranylgeranyl diphos 61.5 9.5 0.00021 41.0 4.1 26 325-350 33-60 (450)
340 PRK07608 ubiquinone biosynthes 61.3 9.5 0.00021 38.7 3.9 32 330-373 6-37 (388)
341 TIGR01316 gltA glutamate synth 61.1 12 0.00025 40.0 4.7 36 326-373 130-165 (449)
342 COG4017 Uncharacterized protei 60.7 20 0.00044 35.6 5.8 93 324-448 40-132 (254)
343 PRK05866 short chain dehydroge 60.7 22 0.00048 35.3 6.3 38 324-373 35-73 (293)
344 PF01946 Thi4: Thi4 family; PD 60.5 13 0.00028 37.3 4.5 35 328-374 16-50 (230)
345 PRK06199 ornithine cyclodeamin 60.0 41 0.0009 35.6 8.5 84 328-429 154-250 (379)
346 PRK14106 murD UDP-N-acetylmura 60.0 15 0.00032 38.6 5.2 26 326-351 2-27 (450)
347 PRK07523 gluconate 5-dehydroge 59.8 34 0.00074 32.4 7.2 36 326-373 7-43 (255)
348 PRK13403 ketol-acid reductoiso 59.5 23 0.0005 37.3 6.4 64 325-414 12-76 (335)
349 PRK01438 murD UDP-N-acetylmura 59.3 16 0.00035 38.9 5.4 28 323-350 10-37 (480)
350 PRK03515 ornithine carbamoyltr 59.3 49 0.0011 34.7 8.8 107 296-417 121-233 (336)
351 TIGR01181 dTDP_gluc_dehyt dTDP 59.2 39 0.00084 32.6 7.6 78 331-420 1-84 (317)
352 PRK10157 putative oxidoreducta 59.1 11 0.00024 39.9 4.0 32 330-373 6-37 (428)
353 PRK08773 2-octaprenyl-3-methyl 58.8 12 0.00025 38.5 4.1 33 329-373 6-38 (392)
354 TIGR01984 UbiH 2-polyprenyl-6- 58.8 10 0.00022 38.4 3.6 20 332-351 2-21 (382)
355 PRK08268 3-hydroxy-acyl-CoA de 58.7 12 0.00026 41.0 4.4 31 330-372 8-38 (507)
356 PRK05993 short chain dehydroge 58.7 26 0.00056 34.1 6.3 99 330-444 5-135 (277)
357 PRK10262 thioredoxin reductase 58.5 8.9 0.00019 38.3 3.1 24 327-350 4-27 (321)
358 TIGR01988 Ubi-OHases Ubiquinon 58.5 11 0.00024 37.8 3.8 31 332-374 2-32 (385)
359 PLN02463 lycopene beta cyclase 58.3 12 0.00025 40.5 4.1 21 330-350 29-49 (447)
360 PRK11749 dihydropyrimidine deh 58.3 13 0.00027 39.6 4.3 35 327-373 138-172 (457)
361 TIGR00292 thiazole biosynthesi 58.1 12 0.00025 37.3 3.8 36 328-375 20-55 (254)
362 PRK12829 short chain dehydroge 58.0 40 0.00086 31.9 7.3 36 326-373 8-44 (264)
363 PRK07588 hypothetical protein; 57.9 14 0.00031 37.8 4.6 21 330-350 1-21 (391)
364 PRK12266 glpD glycerol-3-phosp 57.8 12 0.00026 40.6 4.2 34 330-375 7-40 (508)
365 PRK12778 putative bifunctional 57.7 15 0.00033 41.7 5.2 36 326-373 428-463 (752)
366 PRK12779 putative bifunctional 57.5 14 0.00029 43.8 4.8 40 327-378 304-347 (944)
367 PLN02240 UDP-glucose 4-epimera 57.4 24 0.00052 35.2 6.0 105 326-442 2-130 (352)
368 PRK06416 dihydrolipoamide dehy 57.0 12 0.00027 39.4 4.0 33 330-374 5-37 (462)
369 PLN02695 GDP-D-mannose-3',5'-e 56.9 40 0.00087 34.8 7.7 97 328-444 20-137 (370)
370 COG1086 Predicted nucleoside-d 56.9 20 0.00043 40.4 5.7 137 264-418 169-334 (588)
371 PRK08020 ubiF 2-octaprenyl-3-m 56.9 12 0.00027 38.1 3.9 33 329-373 5-37 (391)
372 cd01968 Nitrogenase_NifE_I Nit 56.9 16 0.00034 38.6 4.8 86 317-418 275-365 (410)
373 COG1748 LYS9 Saccharopine dehy 56.8 16 0.00034 39.2 4.8 85 330-433 2-90 (389)
374 KOG2018 Predicted dinucleotide 56.8 13 0.00028 39.4 3.9 40 325-375 70-109 (430)
375 PRK07424 bifunctional sterol d 56.8 18 0.00039 38.7 5.2 54 293-373 157-211 (406)
376 TIGR02440 FadJ fatty oxidation 56.8 68 0.0015 36.7 10.0 41 406-448 408-448 (699)
377 PRK06185 hypothetical protein; 56.6 13 0.00028 38.2 4.0 34 328-373 5-38 (407)
378 PF06690 DUF1188: Protein of u 56.4 23 0.00049 35.9 5.5 90 324-447 39-128 (252)
379 PRK08013 oxidoreductase; Provi 56.4 14 0.00031 38.2 4.3 33 329-373 3-35 (400)
380 TIGR01789 lycopene_cycl lycope 56.4 17 0.00037 37.8 4.9 35 332-376 2-36 (370)
381 PRK12831 putative oxidoreducta 56.2 15 0.00032 39.5 4.6 35 327-373 138-172 (464)
382 PRK08244 hypothetical protein; 56.2 13 0.00029 39.6 4.2 21 330-350 3-23 (493)
383 COG0654 UbiH 2-polyprenyl-6-me 56.1 16 0.00034 37.8 4.5 46 329-386 2-49 (387)
384 TIGR01377 soxA_mon sarcosine o 56.1 17 0.00036 36.8 4.6 34 331-376 2-35 (380)
385 cd01493 APPBP1_RUB Ubiquitin a 56.0 10 0.00022 40.9 3.2 38 325-373 16-53 (425)
386 COG0565 LasT rRNA methylase [T 55.9 73 0.0016 32.3 9.0 94 328-441 3-113 (242)
387 PRK11445 putative oxidoreducta 55.8 13 0.00029 37.8 4.0 20 331-350 3-22 (351)
388 TIGR00031 UDP-GALP_mutase UDP- 55.7 15 0.00032 39.0 4.3 31 331-373 3-33 (377)
389 PF13407 Peripla_BP_4: Peripla 55.7 41 0.00089 31.6 7.0 159 151-337 52-217 (257)
390 PRK08849 2-octaprenyl-3-methyl 55.6 18 0.00038 37.2 4.8 21 330-350 4-24 (384)
391 PRK06545 prephenate dehydrogen 55.6 35 0.00076 35.4 7.0 22 330-351 1-22 (359)
392 PRK12562 ornithine carbamoyltr 55.6 1.2E+02 0.0025 32.0 10.8 136 260-417 90-233 (334)
393 cd01490 Ube1_repeat2 Ubiquitin 55.5 14 0.00031 40.1 4.2 37 331-373 1-37 (435)
394 PRK08243 4-hydroxybenzoate 3-m 55.4 15 0.00033 37.8 4.3 22 329-350 2-23 (392)
395 PRK06841 short chain dehydroge 55.4 23 0.0005 33.4 5.3 36 326-373 12-48 (255)
396 PRK11559 garR tartronate semia 55.4 50 0.0011 32.8 7.8 32 330-373 3-34 (296)
397 PRK07251 pyridine nucleotide-d 55.4 15 0.00033 38.5 4.4 33 330-374 4-36 (438)
398 TIGR00658 orni_carb_tr ornithi 55.4 1E+02 0.0023 31.6 10.3 147 288-456 108-276 (304)
399 PRK05714 2-octaprenyl-3-methyl 55.3 12 0.00026 38.5 3.5 31 331-373 4-34 (405)
400 PRK09853 putative selenate red 55.3 15 0.00032 43.9 4.7 35 327-373 537-571 (1019)
401 PTZ00245 ubiquitin activating 55.3 12 0.00025 38.6 3.3 39 325-374 22-60 (287)
402 PRK12770 putative glutamate sy 55.2 18 0.0004 36.8 4.8 35 327-373 16-50 (352)
403 PRK07326 short chain dehydroge 55.1 16 0.00035 34.0 4.1 35 327-373 4-39 (237)
404 TIGR00441 gmhA phosphoheptose 55.1 91 0.002 28.4 8.9 37 409-447 79-117 (154)
405 PRK07538 hypothetical protein; 55.1 14 0.00031 38.3 4.0 20 331-350 2-21 (413)
406 PRK14694 putative mercuric red 55.0 16 0.00034 39.0 4.5 34 328-373 5-38 (468)
407 PLN02350 phosphogluconate dehy 54.9 41 0.0009 37.1 7.7 97 331-447 8-110 (493)
408 PRK07067 sorbitol dehydrogenas 54.8 15 0.00032 34.9 3.9 36 326-373 3-39 (257)
409 TIGR00670 asp_carb_tr aspartat 54.8 2.5E+02 0.0055 28.9 13.0 167 260-456 85-273 (301)
410 COG3380 Predicted NAD/FAD-depe 54.7 14 0.00031 38.5 3.8 33 331-375 3-35 (331)
411 TIGR01179 galE UDP-glucose-4-e 54.6 51 0.0011 31.9 7.6 97 331-442 1-119 (328)
412 KOG0743 AAA+-type ATPase [Post 54.6 20 0.00043 39.2 5.1 104 197-337 241-345 (457)
413 COG1063 Tdh Threonine dehydrog 54.5 23 0.0005 36.6 5.4 59 303-372 143-201 (350)
414 PRK12814 putative NADPH-depend 54.4 16 0.00034 41.2 4.5 34 328-373 192-225 (652)
415 PLN02676 polyamine oxidase 54.2 32 0.00068 37.4 6.6 23 328-350 25-47 (487)
416 PRK13394 3-hydroxybutyrate deh 54.0 57 0.0012 30.8 7.7 36 326-373 4-40 (262)
417 TIGR03143 AhpF_homolog putativ 54.0 14 0.00031 40.5 4.0 32 331-374 6-37 (555)
418 TIGR03315 Se_ygfK putative sel 53.9 15 0.00033 43.8 4.4 33 329-373 537-569 (1012)
419 PRK13938 phosphoheptose isomer 53.8 1.1E+02 0.0023 29.6 9.5 37 409-447 113-151 (196)
420 PRK07417 arogenate dehydrogena 53.6 36 0.00077 33.9 6.4 95 331-447 2-118 (279)
421 PRK07494 2-octaprenyl-6-methox 53.5 15 0.00033 37.4 3.9 34 329-374 7-40 (388)
422 PRK07333 2-octaprenyl-6-methox 53.5 13 0.00029 37.8 3.5 20 331-350 3-22 (403)
423 PRK06138 short chain dehydroge 53.4 30 0.00064 32.5 5.6 36 326-373 2-38 (252)
424 PRK08010 pyridine nucleotide-d 53.4 15 0.00032 38.6 3.9 32 330-373 4-35 (441)
425 PRK06392 homoserine dehydrogen 53.4 60 0.0013 33.8 8.2 81 331-418 2-90 (326)
426 PRK01747 mnmC bifunctional tRN 53.3 19 0.00042 40.3 5.0 35 330-376 261-295 (662)
427 TIGR01282 nifD nitrogenase mol 53.3 54 0.0012 35.7 8.2 136 262-418 268-413 (466)
428 PRK04965 NADH:flavorubredoxin 53.3 11 0.00024 38.6 2.9 21 330-350 3-23 (377)
429 PRK11259 solA N-methyltryptoph 53.2 18 0.00038 36.5 4.3 35 329-375 3-37 (376)
430 PRK00711 D-amino acid dehydrog 53.2 17 0.00037 37.3 4.2 31 331-373 2-32 (416)
431 PF04320 DUF469: Protein with 53.2 12 0.00026 33.1 2.7 33 251-283 27-62 (101)
432 TIGR03589 PseB UDP-N-acetylglu 53.0 34 0.00074 34.4 6.3 106 327-444 2-125 (324)
433 PRK02102 ornithine carbamoyltr 53.0 1.5E+02 0.0033 31.1 11.1 109 290-417 117-232 (331)
434 PRK06292 dihydrolipoamide dehy 52.9 16 0.00035 38.4 4.1 32 330-373 4-35 (460)
435 TIGR01373 soxB sarcosine oxida 52.9 22 0.00047 36.7 4.9 38 328-375 29-66 (407)
436 PRK11101 glpA sn-glycerol-3-ph 52.8 17 0.00037 39.9 4.4 34 329-374 6-39 (546)
437 PRK00141 murD UDP-N-acetylmura 52.7 22 0.00047 38.3 5.1 25 326-350 12-36 (473)
438 PRK10015 oxidoreductase; Provi 52.7 18 0.0004 38.3 4.5 33 330-374 6-38 (429)
439 PRK13369 glycerol-3-phosphate 52.5 18 0.00039 39.1 4.4 34 330-375 7-40 (502)
440 PRK11728 hydroxyglutarate oxid 52.5 19 0.00041 37.2 4.4 35 330-374 3-37 (393)
441 PRK08850 2-octaprenyl-6-methox 52.3 17 0.00036 37.6 4.0 33 329-373 4-36 (405)
442 PLN02852 ferredoxin-NADP+ redu 51.9 10 0.00022 41.5 2.5 41 323-373 20-60 (491)
443 cd04951 GT1_WbdM_like This fam 51.8 1.3E+02 0.0029 29.0 10.0 45 400-451 255-299 (360)
444 COG3349 Uncharacterized conser 51.6 11 0.00024 41.5 2.6 22 330-351 1-22 (485)
445 PF12831 FAD_oxidored: FAD dep 51.6 18 0.00039 38.3 4.2 33 332-376 2-34 (428)
446 PRK06124 gluconate 5-dehydroge 51.6 73 0.0016 30.1 8.0 38 324-373 6-44 (256)
447 PRK06912 acoL dihydrolipoamide 51.5 18 0.00039 38.4 4.2 31 331-373 2-32 (458)
448 PRK09186 flagellin modificatio 51.2 20 0.00042 33.9 4.0 35 327-373 2-37 (256)
449 PF03486 HI0933_like: HI0933-l 51.2 18 0.0004 38.6 4.2 31 331-373 2-32 (409)
450 KOG1399 Flavin-containing mono 51.1 14 0.0003 40.2 3.3 23 329-351 6-28 (448)
451 PF00732 GMC_oxred_N: GMC oxid 51.1 13 0.00028 36.4 2.8 35 332-377 3-37 (296)
452 TIGR01317 GOGAT_sm_gam glutama 51.0 20 0.00043 38.7 4.5 34 328-373 142-175 (485)
453 PRK08132 FAD-dependent oxidore 51.0 18 0.00038 39.3 4.1 22 329-350 23-44 (547)
454 cd05006 SIS_GmhA Phosphoheptos 50.9 1E+02 0.0023 28.3 8.7 34 409-445 101-136 (177)
455 cd01974 Nitrogenase_MoFe_beta 50.9 19 0.00041 38.4 4.3 104 317-447 291-405 (435)
456 PRK05749 3-deoxy-D-manno-octul 50.8 54 0.0012 34.0 7.5 37 400-441 312-349 (425)
457 TIGR02053 MerA mercuric reduct 50.7 18 0.0004 38.2 4.1 30 332-373 3-32 (463)
458 TIGR01350 lipoamide_DH dihydro 50.6 19 0.00041 37.9 4.2 30 331-372 3-32 (461)
459 TIGR03736 PRTRC_ThiF PRTRC sys 50.4 20 0.00043 36.0 4.0 45 328-375 10-56 (244)
460 TIGR02360 pbenz_hydroxyl 4-hyd 50.4 20 0.00044 37.1 4.3 21 330-350 3-23 (390)
461 PTZ00188 adrenodoxin reductase 50.3 28 0.00061 38.6 5.5 35 328-373 38-72 (506)
462 PRK04284 ornithine carbamoyltr 50.2 82 0.0018 32.9 8.7 105 296-417 121-232 (332)
463 PRK05868 hypothetical protein; 50.2 20 0.00043 37.0 4.2 21 330-350 2-22 (372)
464 PRK12775 putative trifunctiona 50.1 21 0.00045 42.5 4.8 34 328-373 429-462 (1006)
465 PRK08818 prephenate dehydrogen 50.1 62 0.0013 34.4 7.8 99 327-451 2-115 (370)
466 TIGR03088 stp2 sugar transfera 49.9 1.2E+02 0.0026 30.3 9.6 36 401-441 266-301 (374)
467 PLN02568 polyamine oxidase 49.9 11 0.00023 41.7 2.2 24 328-351 4-27 (539)
468 PRK06126 hypothetical protein; 49.8 24 0.00052 38.2 4.9 36 327-374 5-40 (545)
469 PF02558 ApbA: Ketopantoate re 49.7 28 0.00061 30.7 4.6 31 332-374 1-31 (151)
470 PRK04690 murD UDP-N-acetylmura 49.6 24 0.00052 38.0 4.8 24 327-350 6-29 (468)
471 PRK08219 short chain dehydroge 49.5 70 0.0015 29.3 7.3 71 330-420 4-82 (227)
472 PRK06182 short chain dehydroge 49.5 43 0.00092 32.3 6.1 77 328-420 2-85 (273)
473 COG0665 DadA Glycine/D-amino a 49.5 25 0.00055 35.4 4.7 38 328-377 3-40 (387)
474 TIGR01286 nifK nitrogenase mol 49.4 20 0.00044 39.5 4.3 34 317-350 351-384 (515)
475 COG1252 Ndh NADH dehydrogenase 49.3 19 0.00041 38.8 4.0 35 329-373 3-37 (405)
476 PRK06183 mhpA 3-(3-hydroxyphen 49.3 20 0.00043 38.9 4.2 23 328-350 9-31 (538)
477 TIGR03364 HpnW_proposed FAD de 49.1 20 0.00044 36.2 4.0 32 331-374 2-33 (365)
478 PRK06617 2-octaprenyl-6-methox 49.0 22 0.00047 36.5 4.2 20 331-350 3-22 (374)
479 PRK06834 hypothetical protein; 49.0 22 0.00048 38.4 4.5 35 328-374 2-36 (488)
480 PF13738 Pyr_redox_3: Pyridine 49.0 19 0.0004 32.9 3.4 25 326-350 164-188 (203)
481 PRK05249 soluble pyridine nucl 48.7 21 0.00045 37.7 4.1 33 329-373 5-37 (461)
482 KOG2250 Glutamate/leucine/phen 48.6 1.7E+02 0.0037 32.7 11.0 175 255-447 159-370 (514)
483 TIGR01318 gltD_gamma_fam gluta 48.3 27 0.00059 37.5 5.0 34 328-373 140-173 (467)
484 PRK12826 3-ketoacyl-(acyl-carr 48.2 60 0.0013 30.2 6.7 36 326-373 3-39 (251)
485 PRK05976 dihydrolipoamide dehy 48.2 23 0.0005 37.7 4.4 33 329-373 4-36 (472)
486 CHL00076 chlB photochlorophyll 48.2 28 0.00061 38.3 5.2 80 324-417 300-382 (513)
487 PLN02172 flavin-containing mon 48.2 22 0.00048 38.4 4.3 25 327-351 202-226 (461)
488 PRK07190 hypothetical protein; 48.2 23 0.00049 38.4 4.4 33 329-373 5-37 (487)
489 PRK12809 putative oxidoreducta 48.2 25 0.00055 39.4 4.9 35 328-374 309-343 (639)
490 cd05188 MDR Medium chain reduc 48.1 51 0.0011 30.7 6.2 48 314-373 120-167 (271)
491 PLN02927 antheraxanthin epoxid 48.0 19 0.00041 41.1 3.9 36 326-373 78-113 (668)
492 PRK15461 NADH-dependent gamma- 48.0 48 0.001 33.4 6.4 31 331-373 3-33 (296)
493 PRK02472 murD UDP-N-acetylmura 47.8 31 0.00067 36.2 5.2 24 327-350 3-26 (447)
494 COG1893 ApbA Ketopantoate redu 47.8 58 0.0012 33.5 7.0 22 330-351 1-22 (307)
495 PRK08294 phenol 2-monooxygenas 47.6 19 0.00041 40.5 3.7 35 328-373 31-65 (634)
496 PRK08655 prephenate dehydrogen 47.4 74 0.0016 34.2 8.1 31 331-373 2-33 (437)
497 KOG1200 Mitochondrial/plastidi 47.4 43 0.00094 33.6 5.7 103 325-438 10-143 (256)
498 PLN02657 3,8-divinyl protochlo 47.0 80 0.0017 33.1 8.1 111 322-445 53-182 (390)
499 cd01976 Nitrogenase_MoFe_alpha 46.6 44 0.00096 35.6 6.2 87 316-418 287-378 (421)
500 TIGR03603 cyclo_dehy_ocin bact 46.4 38 0.00082 35.1 5.5 147 259-442 17-184 (318)
No 1
>KOG1257 consensus NADP+-dependent malic enzyme [Energy production and conversion]
Probab=100.00 E-value=5.8e-173 Score=1338.98 Aligned_cols=420 Identities=66% Similarity=1.073 Sum_probs=415.8
Q ss_pred ccccccccccccCCCCCcCCCCCHHHHhhcccCCCCCCcccCHHHHHHHHHHHhhcCCCchhHHHHhhhhhhhhhhhhHH
Q 012398 44 TVSVASGYTLLRDPRHNKGLAFTENERDAHYLRGLLPPALMNQELQEKRLMHNLRQYKVPLQRYVAMMDLQERNERLFYK 123 (464)
Q Consensus 44 ~~~~~~g~~~l~~p~~NkgtaFt~~ER~~lgl~GLlPp~v~t~e~Q~~r~~~~~~~~~~~l~Ky~~L~~L~~~Ne~Lfy~ 123 (464)
..+..+|+++|+||++|||+|||.+||++|||||||||.|+|+|+|++||+.+|+++++||+||+||++||+|||+|||+
T Consensus 25 ~~~~~~g~~ll~~p~~NKglAFTl~ERq~l~i~GLLPp~v~t~d~Q~~r~~~~l~~~~~~l~ky~~L~~L~~rNerLfY~ 104 (582)
T KOG1257|consen 25 VESKKRGYDLLRDPRYNKGLAFTLEERQRLGIHGLLPPVVRTQDEQALRCMNNLRSLTSPLAKYIYLMDLQDRNERLFYR 104 (582)
T ss_pred cccccCChhhccCCCcccccccCHHHHHhhCccccCCccccCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhhHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcccccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceeeccCCCCCCccc
Q 012398 124 LLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERNIQVIVVTDGERILGLGDLGCQGMG 203 (464)
Q Consensus 124 ll~~~~~e~lpivYTPtVg~ac~~~s~i~r~p~gly~s~~d~g~i~~~l~n~~~~~v~viVVTDG~rILGLGDlG~~gm~ 203 (464)
+|++|++|+||||||||||+|||+||+|||+|+|||||++|+|||.++|+|||.++|++||||||+|||||||+|++|||
T Consensus 105 ~l~~nie~~~PIvYTPTvG~acq~y~~i~r~p~Glfisi~D~Ghi~~~l~nWp~~~V~~IvVTDGerILGLGDlG~~Gmg 184 (582)
T KOG1257|consen 105 LLIDNIEELLPIVYTPTVGLACQQYGLIFRRPQGLFISIKDKGHIKQVLKNWPERNVKAIVVTDGERILGLGDLGVNGMG 184 (582)
T ss_pred HHHhhHHHhCCeeecCcHHHHHHHhhhhhccCceeEEEecccchHHHHHHhCCccceeEEEEeCCCceecccccccCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhHHhhhCCCCCCceeeEEeecCCCccccccCccccccccCCCChhhHHHHHHHHHHHHHHhcCCCeeeeeecCC
Q 012398 204 IPVGKLSLYTALGGLRPSACLPITIDVGTNNEQLLNDEFYIGLRQKRATGQEYAELLQEFMTAVKQNYGEKVLIQFEDFA 283 (464)
Q Consensus 204 I~~GKl~Ly~a~gGI~P~~~lPV~LDvgTnne~Ll~Dp~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~ 283 (464)
||+||++||||||||+|++|||||||||||||+||+||+|+|+|++|++|++||+|+||||+||.++|||+++||||||+
T Consensus 185 IpvgKL~Lyta~~GI~P~~cLPV~LDVGTNNe~Ll~DplYiGLr~~R~~g~eYd~~~dEFm~Av~~~yG~~~lIqFEDF~ 264 (582)
T KOG1257|consen 185 IPVGKLALYTALGGIRPSRCLPVCLDVGTNNEKLLNDPLYIGLRQRRVRGKEYDEFLDEFMEAVVQRYGPNTLIQFEDFA 264 (582)
T ss_pred ceecHHHHHHHhcCCChhhceeEEEeccCChHHHhcCccccccccccccccHHHHHHHHHHHHHHHHhCcceEEEehhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccHHHHHHHHcCCCceeecCccchhHHHHHHHHHHHHHhCCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhh
Q 012398 284 NHNAFELLSKYSSSHLVFNDDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEA 363 (464)
Q Consensus 284 ~~~af~iL~ryr~~~~~FnDDiQGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA 363 (464)
++|||++|+|||.++|||||||||||+|+|||||+|+|++|++|+|++|||+|||+||+|||+||+.+|+++ |+|++||
T Consensus 265 ~~nAfrlL~kYr~~~c~FNDDIQGTaaValAgllaa~rit~~~lsd~~ilf~GAG~A~~GIA~l~v~~m~~~-Gl~~eeA 343 (582)
T KOG1257|consen 265 NHNAFRLLEKYRNKYCMFNDDIQGTAAVALAGLLAALRITGKPLSDHVILFLGAGEAALGIANLIVMAMVKE-GLSEEEA 343 (582)
T ss_pred chhHHHHHHHhccccceecccccchhHHHHHHHHHHHHHhCCccccceEEEecCchHHhhHHHHHHHHHHHc-CCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999995 9999999
Q ss_pred cCeEEEEcccCcccCCCccCCchhchhhhhhcCCCCCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEc
Q 012398 364 RKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFAL 443 (464)
Q Consensus 364 ~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaL 443 (464)
+++|||||++|||+++|+.+++++|++||++++++++|+|||+.||||||||+|+++|+|||||||+||++|||||||||
T Consensus 344 ~kkIwlvD~~GLi~~~r~~~l~~~~~~fAk~~~~~~~L~e~V~~vKPtvLiG~S~~~g~Fteevl~~Ma~~~erPiIFal 423 (582)
T KOG1257|consen 344 RKKIWLVDSKGLITKGRKASLTEEKKPFAKDHEEIKDLEEAVKEVKPTVLIGASGVGGAFTEEVLRAMAKSNERPIIFAL 423 (582)
T ss_pred hccEEEEecCceeeccccCCCChhhccccccChHHHHHHHHHHhcCCcEEEecccCCccCCHHHHHHHHhcCCCceEEec
Confidence 99999999999999999878999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCHHHHhccccCC
Q 012398 444 SNPTSQSECTAEEAYTWSKVN 464 (464)
Q Consensus 444 SNPt~~~E~tpedA~~wT~g~ 464 (464)
||||+++||||||||+||+|+
T Consensus 424 SNPT~~aECtae~ay~~t~Gr 444 (582)
T KOG1257|consen 424 SNPTSKAECTAEQAYKWTKGR 444 (582)
T ss_pred CCCccccccCHHHHhhhcCCc
Confidence 999999999999999999996
No 2
>PRK13529 malate dehydrogenase; Provisional
Probab=100.00 E-value=1.1e-168 Score=1330.53 Aligned_cols=418 Identities=49% Similarity=0.863 Sum_probs=409.7
Q ss_pred ccccccccccccCCCCCcCCCCCHHHHhhcccCCCCCCcccCHHHHHHHHHHHhhcCCCchhHHHHhhhhhhhhhhhhHH
Q 012398 44 TVSVASGYTLLRDPRHNKGLAFTENERDAHYLRGLLPPALMNQELQEKRLMHNLRQYKVPLQRYVAMMDLQERNERLFYK 123 (464)
Q Consensus 44 ~~~~~~g~~~l~~p~~NkgtaFt~~ER~~lgl~GLlPp~v~t~e~Q~~r~~~~~~~~~~~l~Ky~~L~~L~~~Ne~Lfy~ 123 (464)
..+..+|.++|+||++|||||||.+||++|||+|||||+|+|+|+|++|||.||+++++||+||+||++||+|||+||||
T Consensus 11 ~~~~~~G~~lL~~p~~NKgtaFt~~ER~~lgl~GLLPp~v~t~e~Q~~R~~~~~~~~~~~l~ky~~L~~L~~~Ne~Lfy~ 90 (563)
T PRK13529 11 LYTPLRGPALLNNPLLNKGTAFTEEEREEFGLEGLLPPAVETLEEQAERAYRQYQSKPTDLEKHIYLRNLQDRNETLFYR 90 (563)
T ss_pred eeecccchhhhcCcccccccCCCHHHHHhcCCCCCCCCCccCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCchhhHH
Confidence 34467999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcccccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceeeccCCCCCCccc
Q 012398 124 LLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERNIQVIVVTDGERILGLGDLGCQGMG 203 (464)
Q Consensus 124 ll~~~~~e~lpivYTPtVg~ac~~~s~i~r~p~gly~s~~d~g~i~~~l~n~~~~~v~viVVTDG~rILGLGDlG~~gm~ 203 (464)
+|++|++|+||||||||||+||++||++||+|+|||+|++|+|+|+++|+|||.++|++||||||||||||||||++|||
T Consensus 91 ll~~~~ee~~PivYTPTVG~ac~~~s~~~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~Gm~ 170 (563)
T PRK13529 91 LLSDHLEEMMPIIYTPTVGEACERFSHIYRRPRGLFISYDDRDRIEDILQNAPNRDIKLIVVTDGERILGIGDQGIGGMG 170 (563)
T ss_pred HHHhCHHHhCCeeecccHHHHHHHHhhcccCCCceEeccCCHHHHHHHHhcCCcccceEEEEeCCceeeeccccCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhHHhhhCCCCCCceeeEEeecCCCccccccCccccccccCCCChhhHHHHHHHHHHHHHHhcCCCeeeeeecCC
Q 012398 204 IPVGKLSLYTALGGLRPSACLPITIDVGTNNEQLLNDEFYIGLRQKRATGQEYAELLQEFMTAVKQNYGEKVLIQFEDFA 283 (464)
Q Consensus 204 I~~GKl~Ly~a~gGI~P~~~lPV~LDvgTnne~Ll~Dp~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~ 283 (464)
|||||++|||+||||||++|||||||+|||||+||+||+|+|+||||++|++||+|+||||++|+.+| |+++||||||+
T Consensus 171 I~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnNe~Ll~DP~YlG~r~~R~~g~eY~~f~defv~av~~~~-P~~~I~~EDf~ 249 (563)
T PRK13529 171 IPIGKLSLYTACGGIDPARTLPVVLDVGTNNEQLLNDPLYLGWRHPRIRGEEYDEFVDEFVQAVKRRF-PNALLQFEDFA 249 (563)
T ss_pred ccccHHHHhhccCCCChhheeceEEecCCCchhhccCccccCcCCCCCchHHHHHHHHHHHHHHHHhC-CCeEEehhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred CccHHHHHHHHcCCCceeecCccchhHHHHHHHHHHHHHhCCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhh
Q 012398 284 NHNAFELLSKYSSSHLVFNDDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEA 363 (464)
Q Consensus 284 ~~~af~iL~ryr~~~~~FnDDiQGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA 363 (464)
++|||+||+|||++||||||||||||+|+||||+||+|++|++|+||||||+|||+||+|||+||+++|++ +|+|+|||
T Consensus 250 ~~~af~iL~ryr~~i~~FnDDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~-~Gl~~eeA 328 (563)
T PRK13529 250 QKNARRILERYRDEICTFNDDIQGTGAVTLAGLLAALKITGEPLSDQRIVFLGAGSAGCGIADQIVAAMVR-EGLSEEEA 328 (563)
T ss_pred CchHHHHHHHhccCCCeeccccchHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHH-cCCChhHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987 69999999
Q ss_pred cCeEEEEcccCcccCCCccCCchhchhhhhhcCCC---------CCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcC
Q 012398 364 RKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPI---------KSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASF 434 (464)
Q Consensus 364 ~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~~~~~---------~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~ 434 (464)
++|||+||++|||+++|.+ |+++|++||++.++. .+|+|||+++|||||||+|+++|+||||||++||++
T Consensus 329 ~~~i~~vD~~GLl~~~r~~-l~~~k~~fa~~~~~~~~~~~~~~~~~L~e~v~~~kPtvLIG~S~~~g~Ft~evv~~Ma~~ 407 (563)
T PRK13529 329 RKRFFMVDRQGLLTDDMPD-LLDFQKPYARKREELADWDTEGDVISLLEVVRNVKPTVLIGVSGQPGAFTEEIVKEMAAH 407 (563)
T ss_pred cCeEEEEcCCCeEeCCCCc-chHHHHHHhhhcccccccccccCCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhc
Confidence 9999999999999999964 999999999975543 699999999999999999999999999999999999
Q ss_pred CCCcEEEEcCCCCCCCCCCHHHHhccccCC
Q 012398 435 NEKPVIFALSNPTSQSECTAEEAYTWSKVN 464 (464)
Q Consensus 435 ~erPIIFaLSNPt~~~E~tpedA~~wT~g~ 464 (464)
|+|||||||||||++|||+|||||+||+|+
T Consensus 408 ~erPIIFaLSNPt~~aE~tpe~a~~~T~Gr 437 (563)
T PRK13529 408 CERPIIFPLSNPTSRAEATPEDLIAWTDGR 437 (563)
T ss_pred CCCCEEEECCCcCCCcccCHHHHHHhhcCC
Confidence 999999999999999999999999999995
No 3
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=100.00 E-value=1.9e-168 Score=1327.99 Aligned_cols=420 Identities=51% Similarity=0.858 Sum_probs=411.1
Q ss_pred cccccccccccccCCCCCcCCCCCHHHHhhcccCCCCCCcccCHHHHHHHHHHHhhcCCCchhHHHHhhhhhhhhhhhhH
Q 012398 43 WTVSVASGYTLLRDPRHNKGLAFTENERDAHYLRGLLPPALMNQELQEKRLMHNLRQYKVPLQRYVAMMDLQERNERLFY 122 (464)
Q Consensus 43 ~~~~~~~g~~~l~~p~~NkgtaFt~~ER~~lgl~GLlPp~v~t~e~Q~~r~~~~~~~~~~~l~Ky~~L~~L~~~Ne~Lfy 122 (464)
...+..+|.++|+||++|||||||.+||++|||+|||||+|+|+|+|++|||.||+++++||+||+||++||+|||+|||
T Consensus 12 ~~~~~~~G~~lL~~p~~NKgtAFt~~ER~~l~l~GLlPp~v~t~e~Q~~R~~~~~~~~~~~l~Ky~~L~~L~~~Ne~Lfy 91 (559)
T PTZ00317 12 KVPSNARGVDVLRNRFLNKGTAFTAEEREHLGIEGLLPPTVETLEQQVERLWTQFNRIETPINKYQFLRNIHDTNETLFY 91 (559)
T ss_pred ccccCCcchhhhcCcccccccCCCHHHHHhcCCCCCCCCCccCHHHHHHHHHHHHhhCCChHHHHHHHHHHhhcCchHHH
Confidence 34566799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceeeccCCCCCCcc
Q 012398 123 KLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERNIQVIVVTDGERILGLGDLGCQGM 202 (464)
Q Consensus 123 ~ll~~~~~e~lpivYTPtVg~ac~~~s~i~r~p~gly~s~~d~g~i~~~l~n~~~~~v~viVVTDG~rILGLGDlG~~gm 202 (464)
+++.+|++|+||||||||||+||++||++||+|+|||+|++|+|+|+++|+|||.++|++||||||||||||||+|++||
T Consensus 92 ~ll~~~~ee~lpivYTPtVg~ac~~~s~~~r~p~Gly~s~~drg~i~~~l~Nwp~~~v~viVVTDG~rILGLGDlG~~Gm 171 (559)
T PTZ00317 92 ALLLKYLKELLPIIYTPTVGEACQNYSNLFQRDRGLYLSRAHKGKIREILKNWPYDNVDVIVITDGSRILGLGDLGANGM 171 (559)
T ss_pred HHHHhCHHHhcceecCcchHHHHHHHHhcccccCceEEeecCcchHHHHHhcCCccCceEEEEeccccccccCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhHHhhhCCCCCCceeeEEeecCCCccccccCccccccccCCCChhhHHHHHHHHHHHHHHhcCCCeeeeeecC
Q 012398 203 GIPVGKLSLYTALGGLRPSACLPITIDVGTNNEQLLNDEFYIGLRQKRATGQEYAELLQEFMTAVKQNYGEKVLIQFEDF 282 (464)
Q Consensus 203 ~I~~GKl~Ly~a~gGI~P~~~lPV~LDvgTnne~Ll~Dp~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~~lIq~EDf 282 (464)
|||+||++|||+||||||++|||||||+|||||+||+||+|+||||+|++|++||+|+||||++|+.+| |+++||||||
T Consensus 172 ~I~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnN~~LL~DPlYlG~r~~R~~g~eY~~f~defv~av~~~~-P~~~Iq~EDf 250 (559)
T PTZ00317 172 GISIGKLSLYVAGGGINPSRVLPVVLDVGTNNEKLLNDPLYLGLREKRLDDDEYYELLDEFMEAVSSRW-PNAVVQFEDF 250 (559)
T ss_pred cccccHHHHHHhhcCCChhhccceEEecCCChhhhccCcccccccCCCCChhhHHHHHHHHHHHHHHhC-CCeEEehhhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred CCccHHHHHHHHcCCCceeecCccchhHHHHHHHHHHHHHhCCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhh
Q 012398 283 ANHNAFELLSKYSSSHLVFNDDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEE 362 (464)
Q Consensus 283 ~~~~af~iL~ryr~~~~~FnDDiQGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~e 362 (464)
+++|||+||+|||++||||||||||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+++|++ +|+|+||
T Consensus 251 ~~~naf~iL~kyr~~i~~FnDDiQGTaaV~lAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~m~~-~Gls~ee 329 (559)
T PTZ00317 251 SNNHCFDLLERYQNKYRCFNDDIQGTGAVIAAGFLNALKLSGVPPEEQRIVFFGAGSAAIGVANNIADLAAE-YGVTREE 329 (559)
T ss_pred CCccHHHHHHHhccCCCEecccchhHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHH-cCCChhH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987 6999999
Q ss_pred hcCeEEEEcccCcccCCCccCCchhchhhhhhc--CC---CCCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCC
Q 012398 363 ARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEH--AP---IKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEK 437 (464)
Q Consensus 363 A~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~~--~~---~~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~er 437 (464)
|++||||||++|||+++|.++|+++|++||++. ++ ..+|+|||+.+|||||||+|+++|+||||||++|+++|+|
T Consensus 330 A~~~i~~vD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~~~~~~L~e~v~~~KPtvLIG~S~~~g~Ft~evv~~Ma~~~~r 409 (559)
T PTZ00317 330 ALKSFYLVDSKGLVTTTRGDKLAKHKVPFARTDISAEDSSLKTLEDVVRFVKPTALLGLSGVGGVFTEEVVKTMASNVER 409 (559)
T ss_pred hcCeEEEEcCCCeEeCCCCccccHHHHHHhccccccccccCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCC
Confidence 999999999999999999766999999999974 33 5799999999999999999999999999999999999999
Q ss_pred cEEEEcCCCCCCCCCCHHHHhccccCC
Q 012398 438 PVIFALSNPTSQSECTAEEAYTWSKVN 464 (464)
Q Consensus 438 PIIFaLSNPt~~~E~tpedA~~wT~g~ 464 (464)
||||||||||++|||+|||||+||+|+
T Consensus 410 PIIFaLSNPt~~aE~tpeda~~~T~Gr 436 (559)
T PTZ00317 410 PIIFPLSNPTSKAECTAEDAYKWTNGR 436 (559)
T ss_pred CEEEECCCCCCCCCcCHHHHHhhccCC
Confidence 999999999999999999999999995
No 4
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=100.00 E-value=2.3e-168 Score=1331.82 Aligned_cols=418 Identities=75% Similarity=1.187 Sum_probs=412.4
Q ss_pred cccccccccCCCCCcCCCCCHHHHhhcccCCCCCCcccCHHHHHHHHHHHhhcCCCchhHHHHhhhhhhhhhhhhHHHhh
Q 012398 47 VASGYTLLRDPRHNKGLAFTENERDAHYLRGLLPPALMNQELQEKRLMHNLRQYKVPLQRYVAMMDLQERNERLFYKLLI 126 (464)
Q Consensus 47 ~~~g~~~l~~p~~NkgtaFt~~ER~~lgl~GLlPp~v~t~e~Q~~r~~~~~~~~~~~l~Ky~~L~~L~~~Ne~Lfy~ll~ 126 (464)
..+|.++|+||.+|||||||.+||++|||+|||||+|+|+|+|++|||.||++++++|+||+||++||++||+|||++++
T Consensus 39 ~~~G~~ll~~p~~NKgtaFt~~ER~~lgl~GLlP~~v~t~e~Q~~R~~~~~~~~~~~l~ky~~L~~L~~~Ne~Lfy~ll~ 118 (581)
T PLN03129 39 VASGYDLLRDPRYNKGLAFTETERDRLGLRGLLPPAVLSQELQVKRFMENLRALESPLAKYRALMDLQERNERLFYRVLI 118 (581)
T ss_pred CCcchhhhcCcccccccCCCHHHHhhcCCccCCCCCcCCHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhCcccchhhhh
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceeeccCCCCCCcccccc
Q 012398 127 DNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERNIQVIVVTDGERILGLGDLGCQGMGIPV 206 (464)
Q Consensus 127 ~~~~e~lpivYTPtVg~ac~~~s~i~r~p~gly~s~~d~g~i~~~l~n~~~~~v~viVVTDG~rILGLGDlG~~gm~I~~ 206 (464)
+|++|+||||||||||+||++||++||+|+|||+|++|+|+|+++++|||.++|++||||||||||||||+|++||||||
T Consensus 119 ~~~~e~lpiiYTPtVg~ac~~~s~~~r~prGlyis~~d~~~i~~~l~n~p~~~v~viVVTDG~rILGLGDlG~~Gm~I~~ 198 (581)
T PLN03129 119 DNIEELLPIVYTPTVGEACQKYGSLFRRPRGLYISLKDKGRVLSMLKNWPERDVQVIVVTDGERILGLGDLGVQGMGIPV 198 (581)
T ss_pred cCHHHhCCeeeCCcHHHHHHHHHHhhcCCCceeecccCHHHHHHHHhcCCCcCceEEEEecCcceeeccccCCCccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHhhhCCCCCCceeeEEeecCCCccccccCccccccccCCCChhhHHHHHHHHHHHHHHhcCCCeeeeeecCCCcc
Q 012398 207 GKLSLYTALGGLRPSACLPITIDVGTNNEQLLNDEFYIGLRQKRATGQEYAELLQEFMTAVKQNYGEKVLIQFEDFANHN 286 (464)
Q Consensus 207 GKl~Ly~a~gGI~P~~~lPV~LDvgTnne~Ll~Dp~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~ 286 (464)
||++|||+||||||++|||||||+|||||+||+||+|+|+||+|++|++|++|+||||++|+.+|||+++||||||++||
T Consensus 199 GKl~Ly~a~aGI~P~~~lPI~LDvGTnNe~LL~DP~YlG~r~~Rv~g~eY~~~~defv~av~~~fGp~~~I~~EDf~~~~ 278 (581)
T PLN03129 199 GKLDLYTAAGGIRPSAVLPVCIDVGTNNEKLLNDPFYIGLRQPRLTGEEYDELVDEFMEAVKQRWGPKVLVQFEDFANKN 278 (581)
T ss_pred hHHHHHHhhcCCChhhccceEEecCCCchhhccCccccCcCCCCCchhhHHHhHHHHHHHHHHHhCCccEEehhhcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCceeecCccchhHHHHHHHHHHHHHhCCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCe
Q 012398 287 AFELLSKYSSSHLVFNDDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKK 366 (464)
Q Consensus 287 af~iL~ryr~~~~~FnDDiQGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~ 366 (464)
||+||+|||++||||||||||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+++|+++.|+|+|||++|
T Consensus 279 af~iL~ryr~~i~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~ 358 (581)
T PLN03129 279 AFRLLQRYRTTHLCFNDDIQGTAAVALAGLLAALRATGGDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKR 358 (581)
T ss_pred HHHHHHHhccCCCEeccccchHHHHHHHHHHHHHHHhCCchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999987669999999999
Q ss_pred EEEEcccCcccCCCccCCchhchhhhhhcCCCCCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCC
Q 012398 367 IWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNP 446 (464)
Q Consensus 367 i~lvD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaLSNP 446 (464)
||+||++|||+++|.++|+++|++||++.++..+|+|||+++|||||||+|+++|+||||||++||++|+||||||||||
T Consensus 359 i~~vD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~~rPIIFaLSNP 438 (581)
T PLN03129 359 IWLVDSKGLVTKSRKDSLQPFKKPFAHDHEPGASLLEAVKAIKPTVLIGLSGVGGTFTKEVLEAMASLNERPIIFALSNP 438 (581)
T ss_pred EEEEcCCCeEeCCCCccChHHHHHHHhhcccCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCC
Confidence 99999999999999766999999999987778899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHhccccCC
Q 012398 447 TSQSECTAEEAYTWSKVN 464 (464)
Q Consensus 447 t~~~E~tpedA~~wT~g~ 464 (464)
|++|||+|||||+||+|+
T Consensus 439 t~~~E~~pe~a~~~T~G~ 456 (581)
T PLN03129 439 TSKAECTAEEAYTWTGGR 456 (581)
T ss_pred CCCcCcCHHHHHHhhcCC
Confidence 999999999999999985
No 5
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=100.00 E-value=8.7e-94 Score=735.45 Aligned_cols=312 Identities=38% Similarity=0.590 Sum_probs=283.6
Q ss_pred ccCHHHHHHHHHHHhhcCCC-chhHHHHhhhhhhhhhhhhHHHhhhcccccCCcccchhhHHHHHHHhhhhcCCCccccc
Q 012398 83 LMNQELQEKRLMHNLRQYKV-PLQRYVAMMDLQERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYIS 161 (464)
Q Consensus 83 v~t~e~Q~~r~~~~~~~~~~-~l~Ky~~L~~L~~~Ne~Lfy~ll~~~~~e~lpivYTPtVg~ac~~~s~i~r~p~gly~s 161 (464)
++|+| |.+|+|.++..+.+ +|++|.|+ ++|+.+||.++-.|..|+|||+||||||++|++||+.++.++
T Consensus 1 v~t~~-q~~~~~~~~~~~~~~aL~~h~~~----~~gki~~~~~~~~~~~~dl~l~YTPgVa~~~~~i~~d~~~~~----- 70 (432)
T COG0281 1 VETIE-QAERAYEQYEQLKTEALDKHEYL----DPGKILIYPTVPLHTQEDLPLAYTPGVAEACKAISEDPRKAY----- 70 (432)
T ss_pred CccHH-HHHHHHHHHhhhhhhhHHHhccC----CCCeEEEEEcccccCHhhcCcccCCchHHHHHHHHhCcchhh-----
Confidence 57899 99999999999888 99999999 899999999999999999999999999999999998777765
Q ss_pred ccCcchHHHHHhcCCCCCeeEEEEecCceeeccCCCCC-CcccccchhhhHHhhhCCCCCCceeeEEeecCCCccccccC
Q 012398 162 LKEKGKILEVLKNWPERNIQVIVVTDGERILGLGDLGC-QGMGIPVGKLSLYTALGGLRPSACLPITIDVGTNNEQLLND 240 (464)
Q Consensus 162 ~~d~g~i~~~l~n~~~~~v~viVVTDG~rILGLGDlG~-~gm~I~~GKl~Ly~a~gGI~P~~~lPV~LDvgTnne~Ll~D 240 (464)
.|+.++++|||||||||||||||||+ .||||||||++|||+||||| +||||||+||+|+
T Consensus 71 ------------~yt~~~n~vaVvTDgtaVLGLGniGp~ag~pVmeGKa~Lfk~faGid---~~pI~ld~~~~~e----- 130 (432)
T COG0281 71 ------------SYTARGNLVAVVTDGTAVLGLGNIGPLAGKPVMEGKAVLFKAFAGID---VLPIELDVGTNNE----- 130 (432)
T ss_pred ------------hcCCCCceEEEEECCceeecccccccccCcchhhhHHHHHHHhcCCC---ceeeEeeCCChHH-----
Confidence 35667779999999999999999995 68999999999999999999 9999999999876
Q ss_pred ccccccccCCCChhhHHHHHHHHHHHHHHhcCCCeeeeeecCCCccHHHHHHHHc--CCCceeecCccchhHHHHHHHHH
Q 012398 241 EFYIGLRQKRATGQEYAELLQEFMTAVKQNYGEKVLIQFEDFANHNAFELLSKYS--SSHLVFNDDIQGTASVVLAGILS 318 (464)
Q Consensus 241 p~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~af~iL~ryr--~~~~~FnDDiQGTaaV~LAgll~ 318 (464)
+++||++++++||+ |++||++.|+||.+++++| .+||||||||||||+|+||||+|
T Consensus 131 -------------------i~~~Vkal~p~Fgg---inLedi~ap~cf~ie~~lr~~~~IPvFhDDqqGTaiv~lA~lln 188 (432)
T COG0281 131 -------------------IIEFVKALEPTFGG---INLEDIDAPRCFAIEERLRYRMNIPVFHDDQQGTAIVTLAALLN 188 (432)
T ss_pred -------------------HHHHHHHhhhcCCC---cceeecccchhhHHHHHHhhcCCCCcccccccHHHHHHHHHHHH
Confidence 89999999999999 9999999999999988765 68999999999999999999999
Q ss_pred HHHHhCCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCcc-CCchhchhhhh-hcC
Q 012398 319 ALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKE-SLQHFKKPWAH-EHA 396 (464)
Q Consensus 319 Alk~~g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~-~l~~~k~~fa~-~~~ 396 (464)
|||++||+|+|+||||+|||+||+|||++|+.+|++ .+|||+|||+|+|+++|.+ .++++|..+|. ...
T Consensus 189 alk~~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~---------~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~ 259 (432)
T COG0281 189 ALKLTGKKLKDQKIVINGAGAAGIAIADLLVAAGVK---------EENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTG 259 (432)
T ss_pred HHHHhCCCccceEEEEeCCcHHHHHHHHHHHHhCCC---------cccEEEEecCCcccCCCcccccchHHHHHHHhhhc
Confidence 999999999999999999999999999999987543 3799999999999999965 36777777775 444
Q ss_pred CCCCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhccccCC
Q 012398 397 PIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWSKVN 464 (464)
Q Consensus 397 ~~~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpedA~~wT~g~ 464 (464)
...+ .+++. +||||||+|++ |+||+|||++|+ ++|||||||||| ||++||||.+|++|+
T Consensus 260 ~~~~-~~~~~--~adv~iG~S~~-G~~t~e~V~~Ma---~~PiIfalaNP~--pEi~Pe~a~~~~~~a 318 (432)
T COG0281 260 ERTL-DLALA--GADVLIGVSGV-GAFTEEMVKEMA---KHPIIFALANPT--PEITPEDAKEWGDGA 318 (432)
T ss_pred cccc-ccccc--CCCEEEEcCCC-CCcCHHHHHHhc---cCCEEeecCCCC--ccCCHHHHhhcCCCC
Confidence 4443 44555 59999999998 899999999998 459999999999 999999999999873
No 6
>PRK12861 malic enzyme; Reviewed
Probab=100.00 E-value=1.2e-86 Score=727.78 Aligned_cols=269 Identities=29% Similarity=0.538 Sum_probs=247.5
Q ss_pred cccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceeeccCCCCCCc-ccccchh
Q 012398 130 EELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERNIQVIVVTDGERILGLGDLGCQG-MGIPVGK 208 (464)
Q Consensus 130 ~e~lpivYTPtVg~ac~~~s~i~r~p~gly~s~~d~g~i~~~l~n~~~~~v~viVVTDG~rILGLGDlG~~g-m~I~~GK 208 (464)
.++|+++|||||+++|++ |+++|+++|- |+.+++.|+|||||||||||||+|++| |||||||
T Consensus 34 ~~dl~l~YtPgVa~~c~~---i~~~p~~~~~--------------~t~r~n~v~VvtdG~~vLGLGdiG~~a~~pvmeGK 96 (764)
T PRK12861 34 QRDLALAYTPGVASACEE---IAADPLNAFR--------------FTSRGNLVGVITNGTAVLGLGNIGALASKPVMEGK 96 (764)
T ss_pred hHHceeecCCchHHHHHH---HHhChHhhhh--------------hhccCcEEEEEecchhhccCCCcCcccccchHHHH
Confidence 467999999999999999 8999999863 556667899999999999999999997 9999999
Q ss_pred hhHHhhhCCCCCCceeeEEeecCCCccccccCccccccccCCCChhhHHHHHHHHHHHHHHhcCCCeeeeeecCCCccHH
Q 012398 209 LSLYTALGGLRPSACLPITIDVGTNNEQLLNDEFYIGLRQKRATGQEYAELLQEFMTAVKQNYGEKVLIQFEDFANHNAF 288 (464)
Q Consensus 209 l~Ly~a~gGI~P~~~lPV~LDvgTnne~Ll~Dp~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~af 288 (464)
++|||+||||| +||||+| | +|| ++|| |||++++++||+ ||||||++||||
T Consensus 97 ~~L~~~~agid---~~di~~~----~----~dp---------------d~~v-~~v~a~~~~fg~---i~lED~~~p~~f 146 (764)
T PRK12861 97 AVLFKKFAGID---VFDIEIN----E----TDP---------------DKLV-DIIAGLEPTFGG---INLEDIKAPECF 146 (764)
T ss_pred HHHHhhccCCC---ccccccC----C----CCH---------------HHHH-HHHHHHHhhcCC---ceeeeccCchHH
Confidence 99999999999 5555554 4 477 6888 999999999988 999999999999
Q ss_pred HHHHHHcC--CCceeecCccchhHHHHHHHHHHHHHhCCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCe
Q 012398 289 ELLSKYSS--SHLVFNDDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKK 366 (464)
Q Consensus 289 ~iL~ryr~--~~~~FnDDiQGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~ 366 (464)
+||+|||+ +||||||||||||+|+||||+||+|++|++|+|+||||+|||+||+|||++|+. .|++++ |
T Consensus 147 ~il~~~~~~~~ipvf~DD~qGTa~v~lA~llnal~~~gk~l~d~~iv~~GAGaAg~~ia~~l~~-----~G~~~~----~ 217 (764)
T PRK12861 147 TVERKLRERMKIPVFHDDQHGTAITVSAAFINGLKVVGKSIKEVKVVTSGAGAAALACLDLLVD-----LGLPVE----N 217 (764)
T ss_pred HHHHHHHhcCCCCeeccccchHHHHHHHHHHHHHHHhCCChhHcEEEEECHhHHHHHHHHHHHH-----cCCChh----h
Confidence 99999998 799999999999999999999999999999999999999999999999999976 498754 9
Q ss_pred EEEEcccCcccCCCccCCchhchhhhhhcCCCCCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCC
Q 012398 367 IWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNP 446 (464)
Q Consensus 367 i~lvD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaLSNP 446 (464)
|||||++|||+++|.+.|+++|++||++. +..+|+|||++ ||||||+|+ +|+||+|||++|+ +||||||||||
T Consensus 218 i~~~D~~Gli~~~r~~~l~~~k~~~a~~~-~~~~L~eai~~--advliG~S~-~g~ft~e~v~~Ma---~~PIIFaLsNP 290 (764)
T PRK12861 218 IWVTDIEGVVYRGRTTLMDPDKERFAQET-DARTLAEVIGG--ADVFLGLSA-GGVLKAEMLKAMA---ARPLILALANP 290 (764)
T ss_pred EEEEcCCCeeeCCCcccCCHHHHHHHhhc-CCCCHHHHHhc--CCEEEEcCC-CCCCCHHHHHHhc---cCCEEEECCCC
Confidence 99999999999999766999999999985 45799999998 899999998 8899999999998 59999999999
Q ss_pred CCCCCCCHHHHhccccCC
Q 012398 447 TSQSECTAEEAYTWSKVN 464 (464)
Q Consensus 447 t~~~E~tpedA~~wT~g~ 464 (464)
| |||+||||++ |+|.
T Consensus 291 t--pE~~pe~a~~-~~g~ 305 (764)
T PRK12861 291 T--PEIFPELAHA-TRDD 305 (764)
T ss_pred C--ccCCHHHHHh-cCCC
Confidence 9 9999999987 8773
No 7
>PRK12862 malic enzyme; Reviewed
Probab=100.00 E-value=3e-86 Score=727.59 Aligned_cols=268 Identities=29% Similarity=0.486 Sum_probs=247.5
Q ss_pred cccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceeeccCCCCCCc-ccccchh
Q 012398 130 EELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERNIQVIVVTDGERILGLGDLGCQG-MGIPVGK 208 (464)
Q Consensus 130 ~e~lpivYTPtVg~ac~~~s~i~r~p~gly~s~~d~g~i~~~l~n~~~~~v~viVVTDG~rILGLGDlG~~g-m~I~~GK 208 (464)
.++|+++|||||+++|++ |+++|+++|- |+.++|.|||||||||||||||+|++| |||||||
T Consensus 38 ~~dl~~~ytpgv~~~~~~---i~~~~~~~~~--------------~t~~~n~v~vvtdg~~vLGlGd~G~~~~~pv~egK 100 (763)
T PRK12862 38 QRDLALAYSPGVAAPCLE---IAADPANAAR--------------YTSRGNLVAVVSNGTAVLGLGNIGPLASKPVMEGK 100 (763)
T ss_pred HHHceeeeCCchHHHHHH---HHhChHhhhh--------------cccCCcEEEEEechhhhccccccCcccccchHHHH
Confidence 367999999999999999 8899998883 667778999999999999999999997 9999999
Q ss_pred hhHHhhhCCCCCCceeeEEeecCCCccccccCccccccccCCCChhhHHHHHHHHHHHHHHhcCCC-eeeeeecCCCccH
Q 012398 209 LSLYTALGGLRPSACLPITIDVGTNNEQLLNDEFYIGLRQKRATGQEYAELLQEFMTAVKQNYGEK-VLIQFEDFANHNA 287 (464)
Q Consensus 209 l~Ly~a~gGI~P~~~lPV~LDvgTnne~Ll~Dp~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~-~lIq~EDf~~~~a 287 (464)
++|||+||||| ++|||+| |+ || ||||++|+..| |+ ..||||||++|||
T Consensus 101 ~~l~~~~~gi~---~~~i~~~----~~----d~-------------------d~~v~~v~~~~-p~f~~i~~ED~~~~~~ 149 (763)
T PRK12862 101 AVLFKKFAGID---VFDIELD----ES----DP-------------------DKLVEIVAALE-PTFGGINLEDIKAPEC 149 (763)
T ss_pred HHHHHhhcCCC---ccccccC----CC----CH-------------------HHHHHHHHHhC-CCcceeeeecccCchH
Confidence 99999999999 7766666 44 55 78888888877 66 6799999999999
Q ss_pred HHHHHHHcCC--CceeecCccchhHHHHHHHHHHHHHhCCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcC
Q 012398 288 FELLSKYSSS--HLVFNDDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARK 365 (464)
Q Consensus 288 f~iL~ryr~~--~~~FnDDiQGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~ 365 (464)
|+||+|||++ ||||||||||||+|+||||+||+|++||+|+|+||||+|||+||+|||++|+. .|+++ +
T Consensus 150 f~i~~~~~~~~~ip~f~DD~~GTa~v~la~l~~a~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~-----~G~~~----~ 220 (763)
T PRK12862 150 FYIERELRERMKIPVFHDDQHGTAIIVAAALLNGLKLVGKDIEDVKLVASGAGAAALACLDLLVS-----LGVKR----E 220 (763)
T ss_pred HHHHHHHHhcCCCceEecCcccHHHHHHHHHHHHHHHhCCChhhcEEEEEChhHHHHHHHHHHHH-----cCCCc----c
Confidence 9999999986 99999999999999999999999999999999999999999999999999987 48873 7
Q ss_pred eEEEEcccCcccCCCccCCchhchhhhhhcCCCCCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC
Q 012398 366 KIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSN 445 (464)
Q Consensus 366 ~i~lvD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaLSN 445 (464)
||||||++|||+++|.+.|+++|++||++. +..+|+|||++ ||||||+|+ +|+||+|||++|+ +|||||||||
T Consensus 221 ~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~-~~~~l~e~~~~--~~v~iG~s~-~g~~~~~~v~~M~---~~piifalsN 293 (763)
T PRK12862 221 NIWVTDIKGVVYEGRTELMDPWKARYAQKT-DARTLAEVIEG--ADVFLGLSA-AGVLKPEMVKKMA---PRPLIFALAN 293 (763)
T ss_pred cEEEEcCCCeeeCCCCccccHHHHHHhhhc-ccCCHHHHHcC--CCEEEEcCC-CCCCCHHHHHHhc---cCCEEEeCCC
Confidence 999999999999999756999999999985 45799999998 999999999 8899999999998 8999999999
Q ss_pred CCCCCCCCHHHHhccccC
Q 012398 446 PTSQSECTAEEAYTWSKV 463 (464)
Q Consensus 446 Pt~~~E~tpedA~~wT~g 463 (464)
|| |||+|||||+||+|
T Consensus 294 P~--~E~~p~~a~~~~~~ 309 (763)
T PRK12862 294 PT--PEILPEEARAVRPD 309 (763)
T ss_pred Cc--ccCCHHHHHHhcCC
Confidence 99 99999999999986
No 8
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=100.00 E-value=1.4e-85 Score=719.64 Aligned_cols=268 Identities=32% Similarity=0.530 Sum_probs=247.2
Q ss_pred cccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceeeccCCCCCC-cccccchh
Q 012398 130 EELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERNIQVIVVTDGERILGLGDLGCQ-GMGIPVGK 208 (464)
Q Consensus 130 ~e~lpivYTPtVg~ac~~~s~i~r~p~gly~s~~d~g~i~~~l~n~~~~~v~viVVTDG~rILGLGDlG~~-gm~I~~GK 208 (464)
.++|+++||||||++|++ |+++|+++| ++++ +++.|+|||||||||||||+|++ ||||||||
T Consensus 30 ~~dl~~~Ytpgv~~~c~~---i~~~~~~~~-~~t~-------------~~n~v~vvtdg~~vLGlGd~G~~a~~pv~egK 92 (752)
T PRK07232 30 QRDLSLAYSPGVAAPCLE---IAKDPADAY-KYTA-------------RGNLVAVISNGTAVLGLGNIGALASKPVMEGK 92 (752)
T ss_pred hhhcceecCCchHHHHHH---HHhChhhcc-cccc-------------CCcEEEEEccchhhccccccccccCccHHHHH
Confidence 467999999999999997 899999999 5554 45579999999999999999999 79999999
Q ss_pred hhHHhhhCCCCCCceeeEEeecCCCccccccCccccccccCCCChhhHHHHHHHHHHHHHHhcCCCe-eeeeecCCCccH
Q 012398 209 LSLYTALGGLRPSACLPITIDVGTNNEQLLNDEFYIGLRQKRATGQEYAELLQEFMTAVKQNYGEKV-LIQFEDFANHNA 287 (464)
Q Consensus 209 l~Ly~a~gGI~P~~~lPV~LDvgTnne~Ll~Dp~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~~-lIq~EDf~~~~a 287 (464)
++|||+||||| ++|||+| |+ | +||||++|+..| |+. .||||||++|||
T Consensus 93 ~~l~~~~~gid---~~~i~~~----~~----d-------------------~de~v~~v~~~~-p~~g~i~~ED~~~p~~ 141 (752)
T PRK07232 93 GVLFKKFAGID---VFDIEVD----EE----D-------------------PDKFIEAVAALE-PTFGGINLEDIKAPEC 141 (752)
T ss_pred HHHHHhhcCCC---ccccccC----CC----C-------------------HHHHHHHHHHhC-CCccEEeeeecCCchH
Confidence 99999999999 6666665 44 2 699999999988 664 899999999999
Q ss_pred HHHHHHHcCC--CceeecCccchhHHHHHHHHHHHHHhCCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcC
Q 012398 288 FELLSKYSSS--HLVFNDDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARK 365 (464)
Q Consensus 288 f~iL~ryr~~--~~~FnDDiQGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~ 365 (464)
|+||+|||++ ||||||||||||+|+||||+||+|++||+|+|+||||+|||+||+|||+||+. .|++ ++
T Consensus 142 f~i~~~~~~~~~ip~f~DD~~GTa~v~lA~l~na~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~-----~G~~----~~ 212 (752)
T PRK07232 142 FYIEEKLRERMDIPVFHDDQHGTAIISAAALLNALELVGKKIEDVKIVVSGAGAAAIACLNLLVA-----LGAK----KE 212 (752)
T ss_pred HHHHHHHHHhcCCCeeccccchHHHHHHHHHHHHHHHhCCChhhcEEEEECccHHHHHHHHHHHH-----cCCC----cc
Confidence 9999999974 89999999999999999999999999999999999999999999999999986 4887 68
Q ss_pred eEEEEcccCcccCCCccCCchhchhhhhhcCCCCCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC
Q 012398 366 KIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSN 445 (464)
Q Consensus 366 ~i~lvD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaLSN 445 (464)
||||||++|||+++|.++|+++|++||++ .+..+|+|||++ ||||||+|+ +|+||+|||++|+ +|||||||||
T Consensus 213 ~i~~~D~~G~i~~~r~~~~~~~k~~~a~~-~~~~~l~~~i~~--~~v~iG~s~-~g~~~~~~v~~M~---~~piifalsN 285 (752)
T PRK07232 213 NIIVCDSKGVIYKGRTEGMDEWKAAYAVD-TDARTLAEAIEG--ADVFLGLSA-AGVLTPEMVKSMA---DNPIIFALAN 285 (752)
T ss_pred cEEEEcCCCeecCCCcccccHHHHHHhcc-CCCCCHHHHHcC--CCEEEEcCC-CCCCCHHHHHHhc---cCCEEEecCC
Confidence 99999999999999966699999999998 455799999998 999999999 8899999999998 7999999999
Q ss_pred CCCCCCCCHHHHhccccC
Q 012398 446 PTSQSECTAEEAYTWSKV 463 (464)
Q Consensus 446 Pt~~~E~tpedA~~wT~g 463 (464)
|| |||+||||++||+|
T Consensus 286 P~--~E~~p~~a~~~~~~ 301 (752)
T PRK07232 286 PD--PEITPEEAKAVRPD 301 (752)
T ss_pred CC--ccCCHHHHHHhcCC
Confidence 99 89999999999986
No 9
>PF00390 malic: Malic enzyme, N-terminal domain; InterPro: IPR012301 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 2HAE_B 1VL6_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A ....
Probab=100.00 E-value=3.2e-83 Score=599.16 Aligned_cols=182 Identities=65% Similarity=1.211 Sum_probs=164.2
Q ss_pred hhhhhhhhHHHhhhcccccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceeec
Q 012398 114 QERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERNIQVIVVTDGERILG 193 (464)
Q Consensus 114 ~~~Ne~Lfy~ll~~~~~e~lpivYTPtVg~ac~~~s~i~r~p~gly~s~~d~g~i~~~l~n~~~~~v~viVVTDG~rILG 193 (464)
|++||+|||+++.+|++|+|||+||||||+||++||++|++|+|+|+|+.|+|+|+++|+|||.++|++|||||||||||
T Consensus 1 q~~n~~Lfy~~l~~~~~e~lpivYTPtVg~ac~~~s~~~~~~~Gly~s~~d~g~i~~~l~n~~~~~v~v~VVTDG~rILG 80 (182)
T PF00390_consen 1 QDRNETLFYRLLSSHLEEMLPIVYTPTVGEACQNYSHLFRRPRGLYLSISDRGHIEEILRNWPERDVRVIVVTDGERILG 80 (182)
T ss_dssp HTTEHHHHHHHHHHTHHHHHHHHSTTCHHHHHHHHHHHGGCHHSCCCEGGGETCHHHHHTTSS-SS--EEEEE-SSSBTT
T ss_pred CCccEEEEEeehhhChHhhCceecCchHHHHHHHHHHhhccccceEEecCChHHHHHHHHhhhccCceEEEEeCchhhcc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcccccchhhhHHhhhCCCCCCceeeEEeecCCCccccccCccccccccCCCChhhHHHHHHHHHHHHHHhcCC
Q 012398 194 LGDLGCQGMGIPVGKLSLYTALGGLRPSACLPITIDVGTNNEQLLNDEFYIGLRQKRATGQEYAELLQEFMTAVKQNYGE 273 (464)
Q Consensus 194 LGDlG~~gm~I~~GKl~Ly~a~gGI~P~~~lPV~LDvgTnne~Ll~Dp~YlG~r~~R~~g~~y~~~idefv~av~~~fGp 273 (464)
|||+|++|||||+||++|||+||||||++|||||||+|||||+||+||+|+|+||+|++|++|++|+||||+||+.+|||
T Consensus 81 lGD~G~~Gm~I~~GKl~ly~~~gGI~P~~~lPv~LDvGTnn~~ll~Dp~Y~G~r~~R~~g~~y~~fvdefv~av~~~~gp 160 (182)
T PF00390_consen 81 LGDLGVNGMGIPIGKLALYTACGGIDPSRCLPVCLDVGTNNEELLNDPLYLGLRHPRVRGEEYDEFVDEFVEAVKRRFGP 160 (182)
T ss_dssp TBS-GGGGHHHHHHHHHHHHHHHS-EGGGEEEEEEESBBS-HHHHH-TT--S-SSB---THHHHHHHHHHHHHHHHHHGC
T ss_pred ccCcCcceEEeeehhhhhHHhhcCcCcccccCeEeecCcchhhhccCcchhccccCCCChhhhhhCHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeeeeecCCCccHHHHHHHHc
Q 012398 274 KVLIQFEDFANHNAFELLSKYS 295 (464)
Q Consensus 274 ~~lIq~EDf~~~~af~iL~ryr 295 (464)
+++||||||+++|||+||+|||
T Consensus 161 ~~~IqfEDf~~~nAf~iL~kYr 182 (182)
T PF00390_consen 161 NALIQFEDFSNPNAFRILDKYR 182 (182)
T ss_dssp TSEEEE-S--CCHHHHHHHHHT
T ss_pred CeEEEEecCCChhHHHHHHhcC
Confidence 9999999999999999999997
No 10
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=100.00 E-value=3.7e-58 Score=450.29 Aligned_cols=158 Identities=56% Similarity=0.916 Sum_probs=143.7
Q ss_pred ccchhHHHHHHHHHHHHHhCCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCC
Q 012398 305 IQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESL 384 (464)
Q Consensus 305 iQGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l 384 (464)
|||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+++|++ +|+|++||++||||+|++|||+++| ++|
T Consensus 1 iqGTaaV~lAgll~Al~~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~-~G~~~~eA~~~i~lvD~~Gll~~~r-~~l 78 (255)
T PF03949_consen 1 IQGTAAVVLAGLLNALRVTGKKLSDQRIVFFGAGSAGIGIARLLVAAMVR-EGLSEEEARKRIWLVDSKGLLTDDR-EDL 78 (255)
T ss_dssp CHHHHHHHHHHHHHHHHHHTS-GGG-EEEEEB-SHHHHHHHHHHHHHHHC-TTS-HHHHHTTEEEEETTEEEBTTT-SSH
T ss_pred CchhHHHHHHHHHHHHHHhCCCHHHcEEEEeCCChhHHHHHHHHHHHHHH-hcCCHHHHhccEEEEeccceEeccC-ccC
Confidence 89999999999999999999999999999999999999999999999998 5999999999999999999999999 569
Q ss_pred chhchhhhhhcCCC---CCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhccc
Q 012398 385 QHFKKPWAHEHAPI---KSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWS 461 (464)
Q Consensus 385 ~~~k~~fa~~~~~~---~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpedA~~wT 461 (464)
+++|++||++.++. .+|+|+|+++|||||||+|+++|+||||||++|+++|||||||||||||+++||+|||||+||
T Consensus 79 ~~~~~~~a~~~~~~~~~~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF~LSNPt~~aE~~peda~~~t 158 (255)
T PF03949_consen 79 NPHKKPFARKTNPEKDWGSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIFPLSNPTPKAECTPEDAYEWT 158 (255)
T ss_dssp SHHHHHHHBSSSTTT--SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEEE-SSSCGGSSS-HHHHHHTT
T ss_pred ChhhhhhhccCcccccccCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEEECCCCCCcccCCHHHHHhhC
Confidence 99999999987665 499999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 012398 462 KVN 464 (464)
Q Consensus 462 ~g~ 464 (464)
+|+
T Consensus 159 ~g~ 161 (255)
T PF03949_consen 159 DGR 161 (255)
T ss_dssp TSE
T ss_pred Cce
Confidence 984
No 11
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=100.00 E-value=2.8e-57 Score=443.69 Aligned_cols=158 Identities=51% Similarity=0.706 Sum_probs=152.4
Q ss_pred ccchhHHHHHHHHHHHHHhCCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCC
Q 012398 305 IQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESL 384 (464)
Q Consensus 305 iQGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l 384 (464)
|||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+++|++ +|+|+|||++|||+||++|||+++|.+ |
T Consensus 1 iqGTaaV~lAgllnAlk~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~-~Gls~e~A~~~i~~vD~~Gll~~~r~~-l 78 (254)
T cd00762 1 IQGTASVAVAGLLAALKVTKKKISEHKVLFNGAGAAALGIANLIVXLXVK-EGISKEEACKRIWXVDRKGLLVKNRKE-T 78 (254)
T ss_pred CchhHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHh-cCCCHHHHhccEEEECCCCeEeCCCCc-c
Confidence 79999999999999999999999999999999999999999999999987 699999999999999999999999965 8
Q ss_pred chhchh---hhhhcCCCCCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhccc
Q 012398 385 QHFKKP---WAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWS 461 (464)
Q Consensus 385 ~~~k~~---fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpedA~~wT 461 (464)
+++|++ |+++.++.++|+|+|+.+|||||||+|+++|+||+|||++|+++|+|||||||||||+++||+|||||+||
T Consensus 79 ~~~~~~~~~~~~~~~~~~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tpe~a~~~t 158 (254)
T cd00762 79 CPNEYHLARFANPERESGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFALSNPTSKAECTAEEAYTAT 158 (254)
T ss_pred CHHHHHHHHHcCcccccCCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEECCCcCCccccCHHHHHhhc
Confidence 999999 88876677899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 012398 462 KVN 464 (464)
Q Consensus 462 ~g~ 464 (464)
+|+
T Consensus 159 ~G~ 161 (254)
T cd00762 159 EGR 161 (254)
T ss_pred CCC
Confidence 984
No 12
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=100.00 E-value=2.1e-56 Score=442.76 Aligned_cols=158 Identities=61% Similarity=0.959 Sum_probs=153.0
Q ss_pred ccchhHHHHHHHHHHHHHhCCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCC
Q 012398 305 IQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESL 384 (464)
Q Consensus 305 iQGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l 384 (464)
|||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+++|++ +|+|+|||+++||++|++|||+++|.+ |
T Consensus 1 IqGTa~V~lAgllnAlk~~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~-~G~~~eeA~~~i~~vD~~Gll~~~r~~-l 78 (279)
T cd05312 1 IQGTAAVALAGLLAALRITGKPLSDQRILFLGAGSAGIGIADLIVSAMVR-EGLSEEEARKKIWLVDSKGLLTKDRKD-L 78 (279)
T ss_pred CchHHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHH-cCCChhhccCeEEEEcCCCeEeCCCCc-c
Confidence 89999999999999999999999999999999999999999999999988 699999999999999999999999965 9
Q ss_pred chhchhhhhhcC--CCCCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcccc
Q 012398 385 QHFKKPWAHEHA--PIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWSK 462 (464)
Q Consensus 385 ~~~k~~fa~~~~--~~~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpedA~~wT~ 462 (464)
+++|++||++.+ +.++|+|+|+.+|||||||+|+++|+||+|+|++|+++|+|||||||||||+++||+|||||+||+
T Consensus 79 ~~~~~~~a~~~~~~~~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~~E~~pe~a~~~t~ 158 (279)
T cd05312 79 TPFKKPFARKDEEKEGKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALSNPTSKAECTAEDAYKWTD 158 (279)
T ss_pred hHHHHHHHhhcCcccCCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECCCcCCccccCHHHHHHhhc
Confidence 999999999866 668999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 012398 463 VN 464 (464)
Q Consensus 463 g~ 464 (464)
|+
T Consensus 159 G~ 160 (279)
T cd05312 159 GR 160 (279)
T ss_pred CC
Confidence 85
No 13
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=99.97 E-value=5.4e-31 Score=253.75 Aligned_cols=139 Identities=39% Similarity=0.554 Sum_probs=127.3
Q ss_pred ccchhHHHHHHHHHHHHHhCCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCC
Q 012398 305 IQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESL 384 (464)
Q Consensus 305 iQGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l 384 (464)
|||||+|++||+++|++..|++++|+||||+|||+||.|||++|.. .|++ +++||++|++|+++.+|.+.|
T Consensus 1 ~qgt~~v~lAG~~~al~~~g~~l~~~rvlvlGAGgAg~aiA~~L~~-----~G~~----~~~i~ivdr~gl~~~~r~~~L 71 (226)
T cd05311 1 QHGTAIVTLAGLLNALKLVGKKIEEVKIVINGAGAAGIAIARLLLA-----AGAK----PENIVVVDSKGVIYEGREDDL 71 (226)
T ss_pred CCchHHHHHHHHHHHHHHhCCCccCCEEEEECchHHHHHHHHHHHH-----cCcC----cceEEEEeCCCccccccchhh
Confidence 7999999999999999999999999999999999999999999975 4876 679999999999999987668
Q ss_pred chhchhhhhhc--CCC-CCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcc
Q 012398 385 QHFKKPWAHEH--API-KSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTW 460 (464)
Q Consensus 385 ~~~k~~fa~~~--~~~-~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpedA~~w 460 (464)
.++|++|++.. ... .+|.|++++ ||+|||+|+ +|.||+++++.|+ ++||||+||||+ +||++++|++|
T Consensus 72 ~~~~~~la~~~~~~~~~~~l~~~l~~--~dvlIgaT~-~G~~~~~~l~~m~---~~~ivf~lsnP~--~e~~~~~A~~~ 142 (226)
T cd05311 72 NPDKNEIAKETNPEKTGGTLKEALKG--ADVFIGVSR-PGVVKKEMIKKMA---KDPIVFALANPV--PEIWPEEAKEA 142 (226)
T ss_pred hHHHHHHHHHhccCcccCCHHHHHhc--CCEEEeCCC-CCCCCHHHHHhhC---CCCEEEEeCCCC--CcCCHHHHHHc
Confidence 99999999864 223 479899986 999999999 7899999999997 899999999999 89999999999
No 14
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=98.93 E-value=1.3e-08 Score=84.07 Aligned_cols=86 Identities=35% Similarity=0.470 Sum_probs=75.5
Q ss_pred chhHHHHHHHHHHHHHhCCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCch
Q 012398 307 GTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQH 386 (464)
Q Consensus 307 GTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~ 386 (464)
+||.++++++..+.+..+++++..+++|+|+|.+|.+++..+.+. | .++++++|+
T Consensus 1 ~t~~~~~~~l~~~~~~~~~~~~~~~v~i~G~G~~g~~~a~~l~~~-----~------~~~v~v~~r-------------- 55 (86)
T cd05191 1 ATAAGAVALLKAAGKVTNKSLKGKTVVVLGAGEVGKGIAKLLADE-----G------GKKVVLCDR-------------- 55 (86)
T ss_pred ChhHHHHHHHHHHHHHhCCCCCCCEEEEECCCHHHHHHHHHHHHc-----C------CCEEEEEcC--------------
Confidence 699999999999999999999999999999999999999999763 2 257999988
Q ss_pred hchhhhhhcCCCCCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 012398 387 FKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALS 444 (464)
Q Consensus 387 ~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaLS 444 (464)
|+||++++.++.|+++.++ ..++.|+||.++
T Consensus 56 ------------------------di~i~~~~~~~~~~~~~~~---~~~~~~~v~~~a 86 (86)
T cd05191 56 ------------------------DILVTATPAGVPVLEEATA---KINEGAVVIDLA 86 (86)
T ss_pred ------------------------CEEEEcCCCCCCchHHHHH---hcCCCCEEEecC
Confidence 9999999999888888444 446899999886
No 15
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.62 E-value=0.0017 Score=69.31 Aligned_cols=127 Identities=19% Similarity=0.268 Sum_probs=89.1
Q ss_pred CCceee----------cCccchhHHHHHHHHHHHHHhCCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCe
Q 012398 297 SHLVFN----------DDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKK 366 (464)
Q Consensus 297 ~~~~Fn----------DDiQGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~ 366 (464)
.+|+|| |.-.||+--++-|+.. .++..+.+.+++|+|+|..|.++|..+.. .|. +
T Consensus 173 ~~Pv~~vn~s~~K~~~dn~~gt~~s~~~ai~r---at~~~l~Gk~VlViG~G~IG~~vA~~lr~-----~Ga-------~ 237 (425)
T PRK05476 173 KFPAINVNDSVTKSKFDNRYGTGESLLDGIKR---ATNVLIAGKVVVVAGYGDVGKGCAQRLRG-----LGA-------R 237 (425)
T ss_pred CCCEEecCCcccCccccccHHHHhhhHHHHHH---hccCCCCCCEEEEECCCHHHHHHHHHHHh-----CCC-------E
Confidence 799998 6678888777666654 34667899999999999999999998864 252 5
Q ss_pred EEEEcccCcccCCCccCCchhchhhhhhcCCCCCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCC
Q 012398 367 IWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNP 446 (464)
Q Consensus 367 i~lvD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaLSNP 446 (464)
++++|.+- .|. +... ...-...++.++++. +|++|-+++..++|+.+.++.|. +.-|++-.+.+
T Consensus 238 ViV~d~dp----~ra--~~A~-----~~G~~v~~l~eal~~--aDVVI~aTG~~~vI~~~~~~~mK---~GailiNvG~~ 301 (425)
T PRK05476 238 VIVTEVDP----ICA--LQAA-----MDGFRVMTMEEAAEL--GDIFVTATGNKDVITAEHMEAMK---DGAILANIGHF 301 (425)
T ss_pred EEEEcCCc----hhh--HHHH-----hcCCEecCHHHHHhC--CCEEEECCCCHHHHHHHHHhcCC---CCCEEEEcCCC
Confidence 88888641 111 1101 111123468898885 99999988777789999999995 44577766666
Q ss_pred CCCCCCCHHH
Q 012398 447 TSQSECTAEE 456 (464)
Q Consensus 447 t~~~E~tped 456 (464)
. .|+..+.
T Consensus 302 d--~Eid~~~ 309 (425)
T PRK05476 302 D--NEIDVAA 309 (425)
T ss_pred C--CccChHH
Confidence 5 5555543
No 16
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.52 E-value=0.00042 Score=73.00 Aligned_cols=117 Identities=23% Similarity=0.352 Sum_probs=82.1
Q ss_pred cchhHHHHHHHHHHHHHhCCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCc
Q 012398 306 QGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQ 385 (464)
Q Consensus 306 QGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~ 385 (464)
.+..+|..+++-.|.+..+. +.+.+++|+|+|..|..+++.+.. .|. .+|+++|+.. ++ .
T Consensus 158 ~~~vSv~~~Av~la~~~~~~-l~~~~VlViGaG~iG~~~a~~L~~-----~G~------~~V~v~~rs~----~r---a- 217 (417)
T TIGR01035 158 AGAVSISSAAVELAERIFGS-LKGKKALLIGAGEMGELVAKHLLR-----KGV------GKILIANRTY----ER---A- 217 (417)
T ss_pred CCCcCHHHHHHHHHHHHhCC-ccCCEEEEECChHHHHHHHHHHHH-----CCC------CEEEEEeCCH----HH---H-
Confidence 55667777777667776654 889999999999999999998864 253 4788888741 11 1
Q ss_pred hhchhhhhhc----CCCCCHHHHHhcCCCcEEEeccCCC-CCCCHHHHHHHHcCCCCc-EEEEcCCCC
Q 012398 386 HFKKPWAHEH----APIKSLLDAVKAIKPTMLMGTSGVG-KTFTKEVVEAMASFNEKP-VIFALSNPT 447 (464)
Q Consensus 386 ~~k~~fa~~~----~~~~~L~e~v~~vkptvLIG~S~~~-g~ft~evv~~Ma~~~erP-IIFaLSNPt 447 (464)
..+++.. -...++.+++.. +|++|-+++.+ ..+++++++.+.....+| +|+-+|+|-
T Consensus 218 ---~~la~~~g~~~i~~~~l~~~l~~--aDvVi~aT~s~~~ii~~e~l~~~~~~~~~~~~viDla~Pr 280 (417)
T TIGR01035 218 ---EDLAKELGGEAVKFEDLEEYLAE--ADIVISSTGAPHPIVSKEDVERALRERTRPLFIIDIAVPR 280 (417)
T ss_pred ---HHHHHHcCCeEeeHHHHHHHHhh--CCEEEECCCCCCceEcHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 1222211 112367788876 99999987544 478999999976433356 889999996
No 17
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.41 E-value=0.0026 Score=67.64 Aligned_cols=128 Identities=18% Similarity=0.247 Sum_probs=93.3
Q ss_pred CCceee----------cCccchhHHHHHHHHHHHHHhCCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCe
Q 012398 297 SHLVFN----------DDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKK 366 (464)
Q Consensus 297 ~~~~Fn----------DDiQGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~ 366 (464)
.+|+|+ |...||+--++-+++. .++..+.+.+++|+|+|..|.++|..+.. .|. +
T Consensus 163 ~~Pv~~vnds~~K~~~dn~~g~g~s~~~~i~r---~t~~~l~GktVvViG~G~IG~~va~~ak~-----~Ga-------~ 227 (413)
T cd00401 163 KFPAINVNDSVTKSKFDNLYGCRESLIDGIKR---ATDVMIAGKVAVVAGYGDVGKGCAQSLRG-----QGA-------R 227 (413)
T ss_pred CCCEEEecchhhcccccccchhchhhHHHHHH---hcCCCCCCCEEEEECCCHHHHHHHHHHHH-----CCC-------E
Confidence 788885 6779999988877765 56778999999999999999999997754 352 4
Q ss_pred EEEEcccCcccCCCccCCchhchhhhhhc-CCCCCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC
Q 012398 367 IWLVDSKGLIVSSRKESLQHFKKPWAHEH-APIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSN 445 (464)
Q Consensus 367 i~lvD~~GLl~~~r~~~l~~~k~~fa~~~-~~~~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaLSN 445 (464)
++++|.+ .. +..+|+.. -...++.++++. .|++|-+++..++|+++.++.|. +.-+|.-.+.
T Consensus 228 ViV~d~d----~~--------R~~~A~~~G~~~~~~~e~v~~--aDVVI~atG~~~~i~~~~l~~mk---~GgilvnvG~ 290 (413)
T cd00401 228 VIVTEVD----PI--------CALQAAMEGYEVMTMEEAVKE--GDIFVTTTGNKDIITGEHFEQMK---DGAIVCNIGH 290 (413)
T ss_pred EEEEECC----hh--------hHHHHHhcCCEEccHHHHHcC--CCEEEECCCCHHHHHHHHHhcCC---CCcEEEEeCC
Confidence 7777753 11 22233321 112356788875 89999999888889999899885 4567766777
Q ss_pred CCCCCCCCHHHHh
Q 012398 446 PTSQSECTAEEAY 458 (464)
Q Consensus 446 Pt~~~E~tpedA~ 458 (464)
+. .|+.+.+..
T Consensus 291 ~~--~eId~~~L~ 301 (413)
T cd00401 291 FD--VEIDVKGLK 301 (413)
T ss_pred CC--CccCHHHHH
Confidence 64 688887654
No 18
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.33 E-value=0.0013 Score=66.66 Aligned_cols=136 Identities=21% Similarity=0.330 Sum_probs=85.8
Q ss_pred ccHHHHHHHHcCCCceeecCccchhHHHHHHHHHHHHHhCCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhc
Q 012398 285 HNAFELLSKYSSSHLVFNDDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEAR 364 (464)
Q Consensus 285 ~~af~iL~ryr~~~~~FnDDiQGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~ 364 (464)
.+|+++=++.|.+.-+. .+-.+|+.+++-.|.+..|. +.+.+|+|+|+|..|..+++.+... | .
T Consensus 139 ~~a~~~~k~vr~et~i~----~~~~sv~~~Av~~a~~~~~~-l~~~~V~ViGaG~iG~~~a~~L~~~-----g------~ 202 (311)
T cd05213 139 QKAIKVGKRVRTETGIS----RGAVSISSAAVELAEKIFGN-LKGKKVLVIGAGEMGELAAKHLAAK-----G------V 202 (311)
T ss_pred HHHHHHHHHHhhhcCCC----CCCcCHHHHHHHHHHHHhCC-ccCCEEEEECcHHHHHHHHHHHHHc-----C------C
Confidence 45666666666544333 34456666666666666665 8999999999999999999888642 3 3
Q ss_pred CeEEEEcccCcccCCCccCCchhchhhhhhcCCCCCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCC--CCcEEEE
Q 012398 365 KKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFN--EKPVIFA 442 (464)
Q Consensus 365 ~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~--erPIIFa 442 (464)
++|+++|+. .+| .....+.|-.......++.++++. +|++|-+++.+.. +++++.+.+.. ..-+|+=
T Consensus 203 ~~V~v~~r~----~~r---a~~la~~~g~~~~~~~~~~~~l~~--aDvVi~at~~~~~--~~~~~~~~~~~~~~~~~viD 271 (311)
T cd05213 203 AEITIANRT----YER---AEELAKELGGNAVPLDELLELLNE--ADVVISATGAPHY--AKIVERAMKKRSGKPRLIVD 271 (311)
T ss_pred CEEEEEeCC----HHH---HHHHHHHcCCeEEeHHHHHHHHhc--CCEEEECCCCCch--HHHHHHHHhhCCCCCeEEEE
Confidence 579988873 221 111111121111112357788876 8999999887644 66666654322 2347788
Q ss_pred cCCCC
Q 012398 443 LSNPT 447 (464)
Q Consensus 443 LSNPt 447 (464)
||||-
T Consensus 272 lavPr 276 (311)
T cd05213 272 LAVPR 276 (311)
T ss_pred eCCCC
Confidence 99986
No 19
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.29 E-value=0.00095 Score=70.40 Aligned_cols=120 Identities=23% Similarity=0.383 Sum_probs=78.5
Q ss_pred chhHHHHHHHHHHHHHhCCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCch
Q 012398 307 GTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQH 386 (464)
Q Consensus 307 GTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~ 386 (464)
+..+|+.+|+--|.+..+ ++.+.+++|+|+|..|..++..+.. .|. ++|+++|+. ..| ...
T Consensus 161 ~~~Sv~~~Av~~a~~~~~-~~~~~~vlViGaG~iG~~~a~~L~~-----~G~------~~V~v~~r~----~~r---a~~ 221 (423)
T PRK00045 161 GAVSVASAAVELAKQIFG-DLSGKKVLVIGAGEMGELVAKHLAE-----KGV------RKITVANRT----LER---AEE 221 (423)
T ss_pred CCcCHHHHHHHHHHHhhC-CccCCEEEEECchHHHHHHHHHHHH-----CCC------CeEEEEeCC----HHH---HHH
Confidence 355666666655544444 6888999999999999999988853 253 578888774 122 111
Q ss_pred hchhhhhhcCCCCCHHHHHhcCCCcEEEeccCCC-CCCCHHHHHHHHcCC--CCcEEEEcCCCC
Q 012398 387 FKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVG-KTFTKEVVEAMASFN--EKPVIFALSNPT 447 (464)
Q Consensus 387 ~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~-g~ft~evv~~Ma~~~--erPIIFaLSNPt 447 (464)
....|....-...++.+++.. +|++|.+++.+ ..+++++++.+.+.. ...+|+=||+|-
T Consensus 222 la~~~g~~~~~~~~~~~~l~~--aDvVI~aT~s~~~~i~~~~l~~~~~~~~~~~~vviDla~Pr 283 (423)
T PRK00045 222 LAEEFGGEAIPLDELPEALAE--ADIVISSTGAPHPIIGKGMVERALKARRHRPLLLVDLAVPR 283 (423)
T ss_pred HHHHcCCcEeeHHHHHHHhcc--CCEEEECCCCCCcEEcHHHHHHHHhhccCCCeEEEEeCCCC
Confidence 111111011112356677775 99999987655 478999999985322 345888999997
No 20
>PLN02477 glutamate dehydrogenase
Probab=97.28 E-value=0.0086 Score=63.68 Aligned_cols=180 Identities=22% Similarity=0.230 Sum_probs=124.7
Q ss_pred CChhhHHHHHHHHHHHHHHhcCCCeeeeeecCCCccH--HHHHHHHcC----CCcee----------ecCccchhHHHHH
Q 012398 251 ATGQEYAELLQEFMTAVKQNYGEKVLIQFEDFANHNA--FELLSKYSS----SHLVF----------NDDIQGTASVVLA 314 (464)
Q Consensus 251 ~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~a--f~iL~ryr~----~~~~F----------nDDiQGTaaV~LA 314 (464)
.+..|-..+...|+.++.+.-||..=|-=+|++..-. --+.++|+. .-.|+ .+--.-||-=+..
T Consensus 112 ~s~~e~e~l~r~f~~~l~~~iG~~~DipapDvgt~~~~M~w~~d~y~~~~g~~~~~vtGkp~~~gGs~~r~~aTg~Gv~~ 191 (410)
T PLN02477 112 LSESELERLTRVFTQKIHDLIGIHTDVPAPDMGTNAQTMAWILDEYSKFHGFSPAVVTGKPIDLGGSLGREAATGRGVVF 191 (410)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCHHHHHHHHHHHHHhhCCCCceEeCCCcccCCCCCCCccchHHHHH
Confidence 4567788889999999999988865555667654321 224567753 11111 2233458887888
Q ss_pred HHHHHHHHhCCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEE-EEcccCcccCCCccCCchhch-hhh
Q 012398 315 GILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIW-LVDSKGLIVSSRKESLQHFKK-PWA 392 (464)
Q Consensus 315 gll~Alk~~g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~-lvD~~GLl~~~r~~~l~~~k~-~fa 392 (464)
++-.+++..|.+|++.||+|.|.|..|.+.|++|.+ .|. +|+ +.|++|-|+... .|+.... .+.
T Consensus 192 ~~~~~~~~~g~~l~g~~VaIqGfGnVG~~~A~~L~e-----~Ga-------kVVaVsD~~G~iy~~~--GLD~~~L~~~k 257 (410)
T PLN02477 192 ATEALLAEHGKSIAGQTFVIQGFGNVGSWAAQLIHE-----KGG-------KIVAVSDITGAVKNEN--GLDIPALRKHV 257 (410)
T ss_pred HHHHHHHHcCCCccCCEEEEECCCHHHHHHHHHHHH-----cCC-------EEEEEECCCCeEECCC--CCCHHHHHHHH
Confidence 888999999999999999999999999999998865 352 566 899999999875 3543221 221
Q ss_pred hhcCCC--------CCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CCCCCC
Q 012398 393 HEHAPI--------KSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSN-PTSQSE 451 (464)
Q Consensus 393 ~~~~~~--------~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaLSN-Pt~~~E 451 (464)
+....+ -+-.+.+. .+.||||=+.. ++.+|++.+..+ .-.||.--+| |+ -+|
T Consensus 258 ~~~g~l~~~~~a~~i~~~e~l~-~~~DvliP~Al-~~~I~~~na~~i----~ak~I~egAN~p~-t~e 318 (410)
T PLN02477 258 AEGGGLKGFPGGDPIDPDDILV-EPCDVLIPAAL-GGVINKENAADV----KAKFIVEAANHPT-DPE 318 (410)
T ss_pred HhcCchhccccceEecCcccee-ccccEEeeccc-cccCCHhHHHHc----CCcEEEeCCCCCC-CHH
Confidence 111111 12334443 38999996665 569999999987 6889999999 65 344
No 21
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=97.28 E-value=0.0029 Score=61.53 Aligned_cols=121 Identities=21% Similarity=0.250 Sum_probs=88.0
Q ss_pred hhHHHHHHHHHHHHHhCCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchh
Q 012398 308 TASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHF 387 (464)
Q Consensus 308 TaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~ 387 (464)
||-=+..++-.+++..+.+|+..||+|.|-|..|.++|++|.+. | .+-+.+.|++|-++.. . ++..
T Consensus 2 Tg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~~~-----G------~~vV~vsD~~g~i~~~-G--ld~~ 67 (217)
T cd05211 2 TGYGVVVAMKAAMKHLGDSLEGLTVAVQGLGNVGWGLAKKLAEE-----G------GKVLAVSDPDGYIYDP-G--ITTE 67 (217)
T ss_pred chhHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHc-----C------CEEEEEEcCCCcEECC-C--CCHH
Confidence 45556677788889999999999999999999999999999763 4 3578899999988876 3 4332
Q ss_pred -chhhhhhcCCCCC-------HHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CC
Q 012398 388 -KKPWAHEHAPIKS-------LLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSN-PT 447 (464)
Q Consensus 388 -k~~fa~~~~~~~~-------L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaLSN-Pt 447 (464)
...+.+....... -.+.+-.++.||||=++. .+.+|++..+.+ .-++|..-+| |+
T Consensus 68 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~DVlipaA~-~~~i~~~~a~~l----~a~~V~e~AN~p~ 131 (217)
T cd05211 68 ELINYAVALGGSARVKVQDYFPGEAILGLDVDIFAPCAL-GNVIDLENAKKL----KAKVVAEGANNPT 131 (217)
T ss_pred HHHHHHHhhCCccccCcccccCcccceeccccEEeeccc-cCccChhhHhhc----CccEEEeCCCCCC
Confidence 2223222111110 013344568999997777 459999999998 4889998888 77
No 22
>PRK09414 glutamate dehydrogenase; Provisional
Probab=97.23 E-value=0.013 Score=63.09 Aligned_cols=180 Identities=16% Similarity=0.140 Sum_probs=125.0
Q ss_pred CChhhHHHHHHHHHHHHHHhcCCCeeeeeecCCCcc--HHHHHHHHcCC---C-------cee----ecCccchhHHHHH
Q 012398 251 ATGQEYAELLQEFMTAVKQNYGEKVLIQFEDFANHN--AFELLSKYSSS---H-------LVF----NDDIQGTASVVLA 314 (464)
Q Consensus 251 ~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~--af~iL~ryr~~---~-------~~F----nDDiQGTaaV~LA 314 (464)
.+..|-..|...|+.++.+.+||..=|-=+|++..- ---+.+.|+.- . |+. .+--..||-=+..
T Consensus 138 ~s~~Eler~~r~~~~~l~~~iG~~~DipapDvgt~~~~M~~~~d~y~~~~~~~~g~vtGkp~~~gGs~gr~~aTg~Gv~~ 217 (445)
T PRK09414 138 KSDAEIMRFCQSFMTELYRHIGPDTDVPAGDIGVGGREIGYLFGQYKRLTNRFEGVLTGKGLSFGGSLIRTEATGYGLVY 217 (445)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCcCccccCCCHHHHHHHHHHHHhhcCcceEEEecCCcccCCCCCCCCcccHHHHH
Confidence 455678889999999999999997777777776421 22356777631 1 211 1233457777788
Q ss_pred HHHHHHHHhCCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEE-cccCcccCCCccCCchh-----c
Q 012398 315 GILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLV-DSKGLIVSSRKESLQHF-----K 388 (464)
Q Consensus 315 gll~Alk~~g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lv-D~~GLl~~~r~~~l~~~-----k 388 (464)
++..+++..+.+|++.||+|.|-|..|...|++|.. .|. +|+.+ |++|-|+... .|+.. +
T Consensus 218 ~~~~~~~~~~~~l~g~rVaIqGfGnVG~~~A~~L~~-----~Ga-------kVVavsDs~G~iyn~~--GLD~~~L~~~k 283 (445)
T PRK09414 218 FAEEMLKARGDSFEGKRVVVSGSGNVAIYAIEKAQQ-----LGA-------KVVTCSDSSGYVYDEE--GIDLEKLKEIK 283 (445)
T ss_pred HHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHH-----CCC-------EEEEEEcCCceEECCC--CCCHHHHHHHH
Confidence 888899999999999999999999999999999964 353 46655 9999999875 34432 1
Q ss_pred h-------hhhhh-cCCCCCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CC
Q 012398 389 K-------PWAHE-HAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSN-PT 447 (464)
Q Consensus 389 ~-------~fa~~-~~~~~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaLSN-Pt 447 (464)
. .|... ....-+-. .+..++.||||=+.. .+.+|++-...+-+ +.-.||.=-+| |+
T Consensus 284 ~~~~~~l~~~~~~~~~~~i~~~-~i~~~d~DVliPaAl-~n~It~~~a~~i~~-~~akiIvEgAN~p~ 348 (445)
T PRK09414 284 EVRRGRISEYAEEFGAEYLEGG-SPWSVPCDIALPCAT-QNELDEEDAKTLIA-NGVKAVAEGANMPS 348 (445)
T ss_pred HhcCCchhhhhhhcCCeecCCc-cccccCCcEEEecCC-cCcCCHHHHHHHHH-cCCeEEEcCCCCCC
Confidence 1 11110 00011222 234567999997766 56999999999843 35679999998 76
No 23
>PRK14031 glutamate dehydrogenase; Provisional
Probab=97.09 E-value=0.021 Score=61.48 Aligned_cols=181 Identities=16% Similarity=0.139 Sum_probs=125.1
Q ss_pred CChhhHHHHHHHHHHHHHHhcCCCeeeeeecCCCc--cHHHHHHHHcC---CC-cee----------ecCccchhHHHHH
Q 012398 251 ATGQEYAELLQEFMTAVKQNYGEKVLIQFEDFANH--NAFELLSKYSS---SH-LVF----------NDDIQGTASVVLA 314 (464)
Q Consensus 251 ~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~--~af~iL~ryr~---~~-~~F----------nDDiQGTaaV~LA 314 (464)
.+-.|...|.-.|+..+.+..||+.-|--+|++.. .---|.+.|+. .. -+| .+--..||-=++-
T Consensus 134 ~s~~Eler~~r~f~~~L~~~iGp~~dipApDvgt~~~~M~~i~d~y~~~~~~~~g~~tgkp~~~GGs~~r~~aTg~Gv~~ 213 (444)
T PRK14031 134 KSNAEVMRFCQAFMLELWRHIGPETDVPAGDIGVGGREVGFMFGMYKKLSHEFTGTFTGKGREFGGSLIRPEATGYGNIY 213 (444)
T ss_pred CCHHHHHHHHHHHHHHHHhccCCCCccCccccCCCHHHHHHHHHHHHhhcCCcceEECCCccccCCCCCCCcccHHHHHH
Confidence 45567788999999999999999888888888752 22346677753 11 233 2333558888888
Q ss_pred HHHHHHHHhCCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhhh
Q 012398 315 GILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE 394 (464)
Q Consensus 315 gll~Alk~~g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~ 394 (464)
++-.+++..|.+|+++||+|.|.|..|...|+.|.++ |. +=+-+.|++|-|+... .++..+..|...
T Consensus 214 ~~~~~~~~~g~~l~g~rVaVQGfGNVG~~aA~~L~e~-----GA------kVVaVSD~~G~iy~~~--Gld~~~l~~~~~ 280 (444)
T PRK14031 214 FLMEMLKTKGTDLKGKVCLVSGSGNVAQYTAEKVLEL-----GG------KVVTMSDSDGYIYDPD--GIDREKLDYIME 280 (444)
T ss_pred HHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEECCCCeEECCC--CCCHHHHHHHHH
Confidence 8889999999999999999999999999999999763 53 3355699999998763 465544332211
Q ss_pred c-----CCC-----------CCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CC
Q 012398 395 H-----API-----------KSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSN-PT 447 (464)
Q Consensus 395 ~-----~~~-----------~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaLSN-Pt 447 (464)
. ..+ -+-.+.. .++.||||=+.. .+.+|++.++.+... -.-+|.--+| |+
T Consensus 281 ~k~~~~~~v~~~~~~~ga~~i~~d~~~-~~~cDIliPaAl-~n~I~~~na~~l~a~-g~~~V~EgAN~P~ 347 (444)
T PRK14031 281 LKNLYRGRIREYAEKYGCKYVEGARPW-GEKGDIALPSAT-QNELNGDDARQLVAN-GVIAVSEGANMPS 347 (444)
T ss_pred HHhhcCCchhhhHhhcCCEEcCCcccc-cCCCcEEeeccc-ccccCHHHHHHHHhc-CCeEEECCCCCCC
Confidence 0 000 0112221 246899997666 469999999999521 1137777888 54
No 24
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=97.08 E-value=0.032 Score=60.21 Aligned_cols=180 Identities=17% Similarity=0.197 Sum_probs=125.9
Q ss_pred CChhhHHHHHHHHHHHHHHhcCCCeeeeeecCCCccHH---HHHHHHcC---CC-ceee----------cCccchhHHHH
Q 012398 251 ATGQEYAELLQEFMTAVKQNYGEKVLIQFEDFANHNAF---ELLSKYSS---SH-LVFN----------DDIQGTASVVL 313 (464)
Q Consensus 251 ~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~af---~iL~ryr~---~~-~~Fn----------DDiQGTaaV~L 313 (464)
.+..|-..|...||..+.+..||..-|-=.|++. +.. -+.+.|+. .. .|+- +--.-||-=++
T Consensus 143 ~s~~El~r~~r~f~~eL~~~IGp~~DvpA~DvGt-~~rem~~~~~~y~~~~~~~~gv~TGK~~~~GGs~~r~eATG~Gv~ 221 (454)
T PTZ00079 143 KSDNEVMRFCQSFMTELYRHIGPDTDVPAGDIGV-GGREIGYLFGQYKKLRNNFEGTLTGKNVKWGGSNIRPEATGYGLV 221 (454)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCccchhhcCC-CHHHHHHHHHHHHHHhCCCCceeCCCCCCCCCCCCCCcccHHHHH
Confidence 4556677899999999999999999899999884 332 24555542 21 2211 11223887788
Q ss_pred HHHHHHHHHhCCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEE-EEcccCcccCCCccCCchhchhhh
Q 012398 314 AGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIW-LVDSKGLIVSSRKESLQHFKKPWA 392 (464)
Q Consensus 314 Agll~Alk~~g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~-lvD~~GLl~~~r~~~l~~~k~~fa 392 (464)
.++-.+++..+.+|++.||+|-|.|..|...|+.|.+ .|. +++ +.|++|-|+... .++..+..+.
T Consensus 222 ~~~~~~l~~~~~~l~Gk~VaVqG~GnVg~~aa~~L~e-----~Ga-------kVVavSD~~G~iy~~~--Gld~~~l~~l 287 (454)
T PTZ00079 222 YFVLEVLKKLNDSLEGKTVVVSGSGNVAQYAVEKLLQ-----LGA-------KVLTMSDSDGYIHEPN--GFTKEKLAYL 287 (454)
T ss_pred HHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHH-----CCC-------EEEEEEcCCCcEECCC--CCCHHHHHHH
Confidence 8889999999999999999999999999999999875 353 466 999999999875 4654442111
Q ss_pred hh--cCCCCCHHH--------------HHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CC
Q 012398 393 HE--HAPIKSLLD--------------AVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSN-PT 447 (464)
Q Consensus 393 ~~--~~~~~~L~e--------------~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaLSN-Pt 447 (464)
.+ ...-+++.+ .+-.++.||||=+..+ +.+|++-++.+-+ +.-.+|.=-+| |+
T Consensus 288 ~~~k~~~~g~i~~~~~~~~~a~~~~~~~~~~~~cDI~iPcA~~-n~I~~~~a~~l~~-~~ak~V~EgAN~p~ 357 (454)
T PTZ00079 288 MDLKNVKRGRLKEYAKHSSTAKYVPGKKPWEVPCDIAFPCATQ-NEINLEDAKLLIK-NGCKLVAEGANMPT 357 (454)
T ss_pred HHHHhhcCCcHHhhhhccCCcEEeCCcCcccCCccEEEecccc-ccCCHHHHHHHHH-cCCeEEEecCCCCC
Confidence 10 000011111 1223689999988775 5999999999853 34668888888 76
No 25
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=97.08 E-value=0.0043 Score=58.27 Aligned_cols=89 Identities=24% Similarity=0.334 Sum_probs=69.1
Q ss_pred HHHHHHHHhCCCCCcceEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhh
Q 012398 315 GILSALKLVGGTLADQTFLFLGAGE-AGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAH 393 (464)
Q Consensus 315 gll~Alk~~g~~l~d~riv~~GAGs-Ag~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~ 393 (464)
+.+-.++-...+|++.+++|+|+|. +|..+|+.|.. .|. ++++++++
T Consensus 30 a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~-----~g~-------~V~v~~r~-------------------- 77 (168)
T cd01080 30 GILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLN-----RNA-------TVTVCHSK-------------------- 77 (168)
T ss_pred HHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhh-----CCC-------EEEEEECC--------------------
Confidence 3344455556789999999999997 69999998864 242 58888864
Q ss_pred hcCCCCCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCC
Q 012398 394 EHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPT 447 (464)
Q Consensus 394 ~~~~~~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaLSNPt 447 (464)
..+|.+.++. +|++|.+++.+..|++++++ +.-+|+=+|.|-
T Consensus 78 ----~~~l~~~l~~--aDiVIsat~~~~ii~~~~~~------~~~viIDla~pr 119 (168)
T cd01080 78 ----TKNLKEHTKQ--ADIVIVAVGKPGLVKGDMVK------PGAVVIDVGINR 119 (168)
T ss_pred ----chhHHHHHhh--CCEEEEcCCCCceecHHHcc------CCeEEEEccCCC
Confidence 0357788887 99999999888899999774 356899999986
No 26
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=96.98 E-value=0.00048 Score=61.54 Aligned_cols=101 Identities=20% Similarity=0.369 Sum_probs=67.2
Q ss_pred CCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhhh---cCCCCCHH
Q 012398 326 TLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE---HAPIKSLL 402 (464)
Q Consensus 326 ~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~---~~~~~~L~ 402 (464)
++++.|++|+|||.+|-+++..|.. .| .++|+++++. .+| .....+.|... .-...++.
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~-----~g------~~~i~i~nRt----~~r---a~~l~~~~~~~~~~~~~~~~~~ 70 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAA-----LG------AKEITIVNRT----PER---AEALAEEFGGVNIEAIPLEDLE 70 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHH-----TT------SSEEEEEESS----HHH---HHHHHHHHTGCSEEEEEGGGHC
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHH-----cC------CCEEEEEECC----HHH---HHHHHHHcCccccceeeHHHHH
Confidence 7999999999999999999988865 35 3689999873 222 22222233110 11234577
Q ss_pred HHHhcCCCcEEEeccCCCC-CCCHHHHHHHHcCCCCcEEEEcCCCCC
Q 012398 403 DAVKAIKPTMLMGTSGVGK-TFTKEVVEAMASFNEKPVIFALSNPTS 448 (464)
Q Consensus 403 e~v~~vkptvLIG~S~~~g-~ft~evv~~Ma~~~erPIIFaLSNPt~ 448 (464)
+.++. +|++|-+++.+. .++++.++...+. ..+||=||+|-.
T Consensus 71 ~~~~~--~DivI~aT~~~~~~i~~~~~~~~~~~--~~~v~Dla~Pr~ 113 (135)
T PF01488_consen 71 EALQE--ADIVINATPSGMPIITEEMLKKASKK--LRLVIDLAVPRD 113 (135)
T ss_dssp HHHHT--ESEEEE-SSTTSTSSTHHHHTTTCHH--CSEEEES-SS-S
T ss_pred HHHhh--CCeEEEecCCCCcccCHHHHHHHHhh--hhceeccccCCC
Confidence 77776 999999887663 7899988765311 249999999963
No 27
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=96.96 E-value=0.0049 Score=60.34 Aligned_cols=123 Identities=22% Similarity=0.276 Sum_probs=89.5
Q ss_pred cchhHHHHHHHHHHHHHhCCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCc
Q 012398 306 QGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQ 385 (464)
Q Consensus 306 QGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~ 385 (464)
.-||-=+..++-.+++..+.+|++.||+|.|-|..|.++|++|.+. |. +=+.+.|++|-++... .++
T Consensus 8 ~~Tg~Gv~~~~~~~~~~~~~~l~~~~v~I~G~G~VG~~~a~~L~~~-----g~------~vv~v~D~~g~~~~~~--Gld 74 (227)
T cd01076 8 EATGRGVAYATREALKKLGIGLAGARVAIQGFGNVGSHAARFLHEA-----GA------KVVAVSDSDGTIYNPD--GLD 74 (227)
T ss_pred ccchHHHHHHHHHHHHhcCCCccCCEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEECCCCeEECCC--CCC
Confidence 4577777888888889889999999999999999999999998653 43 3355999999998865 344
Q ss_pred hhch-hhhhhcCCC--------CCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CC
Q 012398 386 HFKK-PWAHEHAPI--------KSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSN-PT 447 (464)
Q Consensus 386 ~~k~-~fa~~~~~~--------~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaLSN-Pt 447 (464)
.... .+.+....+ -+-.+ +-..+.||||=++. ++.+|++.+..+ .-++|.--+| |.
T Consensus 75 ~~~l~~~~~~~g~l~~~~~~~~~~~~~-i~~~~~Dvlip~a~-~~~i~~~~~~~l----~a~~I~egAN~~~ 140 (227)
T cd01076 75 VPALLAYKKEHGSVLGFPGAERITNEE-LLELDCDILIPAAL-ENQITADNADRI----KAKIIVEAANGPT 140 (227)
T ss_pred HHHHHHHHHhcCCcccCCCceecCCcc-ceeecccEEEecCc-cCccCHHHHhhc----eeeEEEeCCCCCC
Confidence 3221 121111110 12233 33448999998774 669999999999 5899999999 65
No 28
>PRK14982 acyl-ACP reductase; Provisional
Probab=96.96 E-value=0.0084 Score=62.33 Aligned_cols=113 Identities=20% Similarity=0.300 Sum_probs=80.2
Q ss_pred hhHHHHHHHHHHHHHhCCCCCcceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCch
Q 012398 308 TASVVLAGILSALKLVGGTLADQTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQH 386 (464)
Q Consensus 308 TaaV~LAgll~Alk~~g~~l~d~riv~~GA-GsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~ 386 (464)
|+++..+++--|.+..|..|++.+|+|.|| |+.|..++++|... .| .+++++++++ ..| +..
T Consensus 134 T~~ll~~~V~la~~~lg~~l~~k~VLVtGAtG~IGs~lar~L~~~----~g------v~~lilv~R~----~~r---l~~ 196 (340)
T PRK14982 134 TAYVICRQVEQNAPRLGIDLSKATVAVVGATGDIGSAVCRWLDAK----TG------VAELLLVARQ----QER---LQE 196 (340)
T ss_pred HHHHHHHHHHHhHHHhccCcCCCEEEEEccChHHHHHHHHHHHhh----CC------CCEEEEEcCC----HHH---HHH
Confidence 788888899999999999999999999999 89999999999642 13 3578888764 112 322
Q ss_pred hchhhhhhcCCCCCHHHHHhcCCCcEEEeccCCCC--CCCHHHHHHHHcCCCCcEEEEcCCCC
Q 012398 387 FKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGK--TFTKEVVEAMASFNEKPVIFALSNPT 447 (464)
Q Consensus 387 ~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g--~ft~evv~~Ma~~~erPIIFaLSNPt 447 (464)
.+.++.. ....++.+++.. +|++|-+++.+. .++++.++ +.-+|+=+|.|-
T Consensus 197 La~el~~--~~i~~l~~~l~~--aDiVv~~ts~~~~~~I~~~~l~------~~~~viDiAvPR 249 (340)
T PRK14982 197 LQAELGG--GKILSLEEALPE--ADIVVWVASMPKGVEIDPETLK------KPCLMIDGGYPK 249 (340)
T ss_pred HHHHhcc--ccHHhHHHHHcc--CCEEEECCcCCcCCcCCHHHhC------CCeEEEEecCCC
Confidence 2333321 223468888886 999998877643 26777662 333556688885
No 29
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=96.96 E-value=0.011 Score=62.73 Aligned_cols=128 Identities=20% Similarity=0.241 Sum_probs=90.4
Q ss_pred CCceee----------cCccchhHHHHHHHHHHHHHhCCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCe
Q 012398 297 SHLVFN----------DDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKK 366 (464)
Q Consensus 297 ~~~~Fn----------DDiQGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~ 366 (464)
.+|+|+ |.-.||+--++-+++ |.++..+...+++|+|+|..|.++|..+.. .|. +
T Consensus 156 ~~Pvi~vnds~~K~~fDn~yg~g~s~~~~i~---r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~-----~Ga-------~ 220 (406)
T TIGR00936 156 KFPAINVNDAYTKSLFDNRYGTGQSTIDGIL---RATNLLIAGKTVVVAGYGWCGKGIAMRARG-----MGA-------R 220 (406)
T ss_pred CCcEEEecchhhchhhhcccccchhHHHHHH---HhcCCCCCcCEEEEECCCHHHHHHHHHHhh-----CcC-------E
Confidence 789987 777999977766654 456777999999999999999999997764 252 5
Q ss_pred EEEEcccCcccCCCccCCchhchhhhh-hcCCCCCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC
Q 012398 367 IWLVDSKGLIVSSRKESLQHFKKPWAH-EHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSN 445 (464)
Q Consensus 367 i~lvD~~GLl~~~r~~~l~~~k~~fa~-~~~~~~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaLSN 445 (464)
++++|.+- .| ...|+ ..-...++.|+++. .|++|-+++..++++.+.+..|. +.-||.-.+.
T Consensus 221 ViV~d~dp----~r--------~~~A~~~G~~v~~leeal~~--aDVVItaTG~~~vI~~~~~~~mK---~GailiN~G~ 283 (406)
T TIGR00936 221 VIVTEVDP----IR--------ALEAAMDGFRVMTMEEAAKI--GDIFITATGNKDVIRGEHFENMK---DGAIVANIGH 283 (406)
T ss_pred EEEEeCCh----hh--------HHHHHhcCCEeCCHHHHHhc--CCEEEECCCCHHHHHHHHHhcCC---CCcEEEEECC
Confidence 88887631 11 11111 11122367888875 89999888777788888888885 5567777777
Q ss_pred CCCCCCCCHHHHh
Q 012398 446 PTSQSECTAEEAY 458 (464)
Q Consensus 446 Pt~~~E~tpedA~ 458 (464)
.. .|+..++..
T Consensus 284 ~~--~eId~~aL~ 294 (406)
T TIGR00936 284 FD--VEIDVKALE 294 (406)
T ss_pred CC--ceeCHHHHH
Confidence 65 566655543
No 30
>PLN02494 adenosylhomocysteinase
Probab=96.88 E-value=0.012 Score=63.76 Aligned_cols=130 Identities=15% Similarity=0.238 Sum_probs=95.6
Q ss_pred CCceee----------cCccchhHHHHHHHHHHHHHhCCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCe
Q 012398 297 SHLVFN----------DDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKK 366 (464)
Q Consensus 297 ~~~~Fn----------DDiQGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~ 366 (464)
.+|+++ |...||+--++-|++ |.++..+...+++|+|.|..|.++|+.+.. .|+ +
T Consensus 215 ~~Pvi~vnds~~K~~fDn~yGtgqS~~d~i~---r~t~i~LaGKtVvViGyG~IGr~vA~~aka-----~Ga-------~ 279 (477)
T PLN02494 215 LFPAINVNDSVTKSKFDNLYGCRHSLPDGLM---RATDVMIAGKVAVICGYGDVGKGCAAAMKA-----AGA-------R 279 (477)
T ss_pred CCCEEEEcChhhhhhhhccccccccHHHHHH---HhcCCccCCCEEEEECCCHHHHHHHHHHHH-----CCC-------E
Confidence 688876 556899988888877 457778999999999999999999998853 253 5
Q ss_pred EEEEcccCcccCCCccCCchhchhhhhh-cCCCCCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC
Q 012398 367 IWLVDSKGLIVSSRKESLQHFKKPWAHE-HAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSN 445 (464)
Q Consensus 367 i~lvD~~GLl~~~r~~~l~~~k~~fa~~-~~~~~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaLSN 445 (464)
++++|.+.. + ...|.. .-...++.|+++. +|++|=+++..++++++.++.|. +..++.-.+.
T Consensus 280 VIV~e~dp~----r--------~~eA~~~G~~vv~leEal~~--ADVVI~tTGt~~vI~~e~L~~MK---~GAiLiNvGr 342 (477)
T PLN02494 280 VIVTEIDPI----C--------ALQALMEGYQVLTLEDVVSE--ADIFVTTTGNKDIIMVDHMRKMK---NNAIVCNIGH 342 (477)
T ss_pred EEEEeCCch----h--------hHHHHhcCCeeccHHHHHhh--CCEEEECCCCccchHHHHHhcCC---CCCEEEEcCC
Confidence 787776421 1 011111 0012368898886 99999877767788999999996 6778888888
Q ss_pred CCCCCCCCHHHHhcc
Q 012398 446 PTSQSECTAEEAYTW 460 (464)
Q Consensus 446 Pt~~~E~tpedA~~w 460 (464)
+. .|+.-+...++
T Consensus 343 ~~--~eID~~aL~~~ 355 (477)
T PLN02494 343 FD--NEIDMLGLETY 355 (477)
T ss_pred CC--CccCHHHHhhc
Confidence 76 78888776654
No 31
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=96.88 E-value=0.0038 Score=66.43 Aligned_cols=136 Identities=23% Similarity=0.354 Sum_probs=90.0
Q ss_pred ccHHHHHHHHcC--CCceeecCccchhHHHHHHHHHHHHHhCCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhh
Q 012398 285 HNAFELLSKYSS--SHLVFNDDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEE 362 (464)
Q Consensus 285 ~~af~iL~ryr~--~~~~FnDDiQGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~e 362 (464)
..||..=+|.|. .|. .|-.+|.-|++--|-++.|. |++.+++|+|||..|-.+|+.|... |+
T Consensus 139 qkAi~~gKrvRseT~I~------~~~VSi~saAv~lA~~~~~~-L~~~~vlvIGAGem~~lva~~L~~~-----g~---- 202 (414)
T COG0373 139 QKAISVGKRVRSETGIG------KGAVSISSAAVELAKRIFGS-LKDKKVLVIGAGEMGELVAKHLAEK-----GV---- 202 (414)
T ss_pred HHHHHHHHHhhcccCCC------CCccchHHHHHHHHHHHhcc-cccCeEEEEcccHHHHHHHHHHHhC-----CC----
Confidence 345555566664 231 23334555556666666655 9999999999999999999988763 53
Q ss_pred hcCeEEEEcccCcccCCCccCCchhchhhhhhc----CCCCCHHHHHhcCCCcEEEecc-CCCCCCCHHHHHHHHcCCCC
Q 012398 363 ARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEH----APIKSLLDAVKAIKPTMLMGTS-GVGKTFTKEVVEAMASFNEK 437 (464)
Q Consensus 363 A~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~~----~~~~~L~e~v~~vkptvLIG~S-~~~g~ft~evv~~Ma~~~er 437 (464)
++|+++.+ |..|. +.+|+.- -....|.+.+.. .||+|-.+ ++...++.+.++.-.+..++
T Consensus 203 --~~i~IaNR----T~erA-------~~La~~~~~~~~~l~el~~~l~~--~DvVissTsa~~~ii~~~~ve~a~~~r~~ 267 (414)
T COG0373 203 --KKITIANR----TLERA-------EELAKKLGAEAVALEELLEALAE--ADVVISSTSAPHPIITREMVERALKIRKR 267 (414)
T ss_pred --CEEEEEcC----CHHHH-------HHHHHHhCCeeecHHHHHHhhhh--CCEEEEecCCCccccCHHHHHHHHhcccC
Confidence 68888877 33332 2233321 123467777776 99998665 44458899999887654444
Q ss_pred cEEEEcCCCCCCCC
Q 012398 438 PVIFALSNPTSQSE 451 (464)
Q Consensus 438 PIIFaLSNPt~~~E 451 (464)
=+||=++||-.-.+
T Consensus 268 ~livDiavPRdie~ 281 (414)
T COG0373 268 LLIVDIAVPRDVEP 281 (414)
T ss_pred eEEEEecCCCCCCc
Confidence 49999999974433
No 32
>PRK14030 glutamate dehydrogenase; Provisional
Probab=96.76 E-value=0.076 Score=57.23 Aligned_cols=180 Identities=14% Similarity=0.110 Sum_probs=125.0
Q ss_pred CChhhHHHHHHHHHHHHHHhcCCCeeeeeecCCCccHH---HHHHHHcC----CCceeec---Cc-------cchhHHHH
Q 012398 251 ATGQEYAELLQEFMTAVKQNYGEKVLIQFEDFANHNAF---ELLSKYSS----SHLVFND---DI-------QGTASVVL 313 (464)
Q Consensus 251 ~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~af---~iL~ryr~----~~~~FnD---Di-------QGTaaV~L 313 (464)
.+..|-..|.-.||..+.+..||+.=|==.|++. +.. -+.+.|+. ...++-- +. ..||-=+.
T Consensus 134 ~s~~Eler~~r~f~~~L~~~iGp~~DIpApDvgt-~~~~M~w~~d~y~~~~~~~~g~vTGkp~~~gGs~gr~~ATg~Gv~ 212 (445)
T PRK14030 134 KSDAEIMRFCQAFMLELWRHIGPDTDVPAGDIGV-GGREVGYMFGMYKKLTREFTGTLTGKGLEFGGSLIRPEATGFGAL 212 (445)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCccccccCC-CHHHHHHHHHHHHhccCccccEEEccccccCCCCCCCCccHHHHH
Confidence 4555788899999999998889987777777773 332 25567753 2223211 12 23888888
Q ss_pred HHHHHHHHHhCCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhh-
Q 012398 314 AGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWA- 392 (464)
Q Consensus 314 Agll~Alk~~g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa- 392 (464)
.++..+++..|.+|++.||+|-|.|..|...|+.|.++ |. +=+-+.|++|-|+... .++..+..+.
T Consensus 213 ~~~~~~~~~~g~~l~g~~vaIQGfGnVG~~aA~~L~e~-----Ga------kvVavSD~~G~i~d~~--Gld~~~l~~l~ 279 (445)
T PRK14030 213 YFVHQMLETKGIDIKGKTVAISGFGNVAWGAATKATEL-----GA------KVVTISGPDGYIYDPD--GISGEKIDYML 279 (445)
T ss_pred HHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEEcCCceEECCC--CCCHHHHHHHH
Confidence 88889999999999999999999999999999999653 53 4577789999998864 4554432111
Q ss_pred --------------hhcCCC--CCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CC
Q 012398 393 --------------HEHAPI--KSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSN-PT 447 (464)
Q Consensus 393 --------------~~~~~~--~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaLSN-Pt 447 (464)
..-+.. -+-.+ +-.++.||||=+... +.+|++.++.+.+ +.-.||.=-+| |+
T Consensus 280 ~~k~~~~~~~~~~~~~~~ga~~i~~~~-~~~~~cDVliPcAl~-n~I~~~na~~l~~-~~ak~V~EgAN~p~ 348 (445)
T PRK14030 280 ELRASGNDIVAPYAEKFPGSTFFAGKK-PWEQKVDIALPCATQ-NELNGEDADKLIK-NGVLCVAEVSNMGC 348 (445)
T ss_pred HHHHhcCccHHHHHhcCCCCEEcCCcc-ceeccccEEeecccc-ccCCHHHHHHHHH-cCCeEEEeCCCCCC
Confidence 010110 01122 223579999977764 5999999999953 34679999998 54
No 33
>PLN00203 glutamyl-tRNA reductase
Probab=96.70 E-value=0.0055 Score=66.88 Aligned_cols=121 Identities=21% Similarity=0.327 Sum_probs=79.2
Q ss_pred chhHHHHHHHHHHHHHhCC-CCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCc
Q 012398 307 GTASVVLAGILSALKLVGG-TLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQ 385 (464)
Q Consensus 307 GTaaV~LAgll~Alk~~g~-~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~ 385 (464)
|--+|+-+|+=-|.++.|. +|.+.+|+|+|||..|..+++.+.. .|. ++|+++++. .++ ..
T Consensus 243 ~~vSv~s~Av~la~~~~~~~~l~~kkVlVIGAG~mG~~~a~~L~~-----~G~------~~V~V~nRs----~er---a~ 304 (519)
T PLN00203 243 GAVSVSSAAVELALMKLPESSHASARVLVIGAGKMGKLLVKHLVS-----KGC------TKMVVVNRS----EER---VA 304 (519)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCCCCEEEEEeCHHHHHHHHHHHHh-----CCC------CeEEEEeCC----HHH---HH
Confidence 3334555566666666664 6999999999999999999987753 353 579998874 222 12
Q ss_pred hhchhhhh---hcCCCCCHHHHHhcCCCcEEEeccCCC-CCCCHHHHHHHHcCC---CCc-EEEEcCCCC
Q 012398 386 HFKKPWAH---EHAPIKSLLDAVKAIKPTMLMGTSGVG-KTFTKEVVEAMASFN---EKP-VIFALSNPT 447 (464)
Q Consensus 386 ~~k~~fa~---~~~~~~~L~e~v~~vkptvLIG~S~~~-g~ft~evv~~Ma~~~---erP-IIFaLSNPt 447 (464)
.....|-. ......++.++++. +|++|.+++.+ ..|++++++.|-+.. .+| +|+=||.|-
T Consensus 305 ~La~~~~g~~i~~~~~~dl~~al~~--aDVVIsAT~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPR 372 (519)
T PLN00203 305 ALREEFPDVEIIYKPLDEMLACAAE--ADVVFTSTSSETPLFLKEHVEALPPASDTVGGKRLFVDISVPR 372 (519)
T ss_pred HHHHHhCCCceEeecHhhHHHHHhc--CCEEEEccCCCCCeeCHHHHHHhhhcccccCCCeEEEEeCCCC
Confidence 22222210 01123467788876 99999886443 489999999985321 244 566799995
No 34
>PLN00106 malate dehydrogenase
Probab=96.61 E-value=0.012 Score=60.63 Aligned_cols=118 Identities=24% Similarity=0.320 Sum_probs=81.6
Q ss_pred HHHHHHHHHhCCCCCcceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhh
Q 012398 314 AGILSALKLVGGTLADQTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWA 392 (464)
Q Consensus 314 Agll~Alk~~g~~l~d~riv~~GA-GsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa 392 (464)
|.-+.|+|..|..-. .||+|+|| |..|..+|..|.. .|+ ...+.++|.+- ..+..-+|.+... +.
T Consensus 4 ~~~~~~~~~~~~~~~-~KV~IiGaaG~VG~~~a~~l~~-----~~~-----~~el~L~Di~~--~~g~a~Dl~~~~~-~~ 69 (323)
T PLN00106 4 ASSLRACRAKGGAPG-FKVAVLGAAGGIGQPLSLLMKM-----NPL-----VSELHLYDIAN--TPGVAADVSHINT-PA 69 (323)
T ss_pred hhhhhccccccCCCC-CEEEEECCCCHHHHHHHHHHHh-----CCC-----CCEEEEEecCC--CCeeEchhhhCCc-Cc
Confidence 345678888877655 59999999 9999999998864 244 35799999865 1111112332211 11
Q ss_pred hhc--CCCCCHHHHHhcCCCcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEEcCCCC
Q 012398 393 HEH--APIKSLLDAVKAIKPTMLMGTSGVGKT--------------FTKEVVEAMASFNEKPVIFALSNPT 447 (464)
Q Consensus 393 ~~~--~~~~~L~e~v~~vkptvLIG~S~~~g~--------------ft~evv~~Ma~~~erPIIFaLSNPt 447 (464)
+-. ....++.+++++ .|++|=+.+.+.. ..+++++.+.+++.+.||+.-|||.
T Consensus 70 ~i~~~~~~~d~~~~l~~--aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPv 138 (323)
T PLN00106 70 QVRGFLGDDQLGDALKG--ADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPV 138 (323)
T ss_pred eEEEEeCCCCHHHHcCC--CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 111 123568899998 9999866665421 4567889999999999999999999
No 35
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=96.60 E-value=0.013 Score=59.09 Aligned_cols=125 Identities=18% Similarity=0.265 Sum_probs=82.4
Q ss_pred ccchhHHHHHHHHHHHHHhCCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCC
Q 012398 305 IQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESL 384 (464)
Q Consensus 305 iQGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l 384 (464)
+..+.+++=.++..+++..+..|.+.+++|+|+|.+|.++|+.+.. .|. +++++|++. . .+
T Consensus 127 ~~n~~~~Ae~ai~~al~~~~~~l~gk~v~IiG~G~iG~avA~~L~~-----~G~-------~V~v~~R~~----~---~~ 187 (287)
T TIGR02853 127 IYNSIPTAEGAIMMAIEHTDFTIHGSNVMVLGFGRTGMTIARTFSA-----LGA-------RVFVGARSS----A---DL 187 (287)
T ss_pred EEccHhHHHHHHHHHHHhcCCCCCCCEEEEEcChHHHHHHHHHHHH-----CCC-------EEEEEeCCH----H---HH
Confidence 3455566666777888888889999999999999999999999964 253 588888741 1 11
Q ss_pred chhchhhhhhcCCCCCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHH
Q 012398 385 QHFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEA 457 (464)
Q Consensus 385 ~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpedA 457 (464)
...+ .+....-...+|.+.++. .|++|=+. +.+.++++.++.|. +..+|+=+|..- -++..+.|
T Consensus 188 ~~~~-~~g~~~~~~~~l~~~l~~--aDiVint~-P~~ii~~~~l~~~k---~~aliIDlas~P--g~tdf~~A 251 (287)
T TIGR02853 188 ARIT-EMGLIPFPLNKLEEKVAE--IDIVINTI-PALVLTADVLSKLP---KHAVIIDLASKP--GGTDFEYA 251 (287)
T ss_pred HHHH-HCCCeeecHHHHHHHhcc--CCEEEECC-ChHHhCHHHHhcCC---CCeEEEEeCcCC--CCCCHHHH
Confidence 1110 000000112357788875 99999654 44578999999885 466888776422 35555444
No 36
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=96.54 E-value=0.032 Score=53.37 Aligned_cols=113 Identities=19% Similarity=0.252 Sum_probs=78.2
Q ss_pred chhHHHHHHHHHHHHHh--CCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCC
Q 012398 307 GTASVVLAGILSALKLV--GGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESL 384 (464)
Q Consensus 307 GTaaV~LAgll~Alk~~--g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l 384 (464)
.||-=+..++-.+++.. +.++++.+|+|.|.|..|..+|+.|.+. |. +++++|++. +.+
T Consensus 4 aTg~Gv~~~~~~~~~~~~~~~~l~gk~v~I~G~G~vG~~~A~~L~~~-----G~-------~Vvv~D~~~-------~~~ 64 (200)
T cd01075 4 PTAYGVFLGMKAAAEHLLGTDSLEGKTVAVQGLGKVGYKLAEHLLEE-----GA-------KLIVADINE-------EAV 64 (200)
T ss_pred hhHHHHHHHHHHHHHHhcCCCCCCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEcCCH-------HHH
Confidence 35555666777777775 8899999999999999999999988753 53 688888651 112
Q ss_pred chhchhhhhhcCCCCCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CC
Q 012398 385 QHFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSN-PT 447 (464)
Q Consensus 385 ~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaLSN-Pt 447 (464)
...+..|. ...-+..+... .+.|+++=++. ++.+|++.++.| .-++|..-+| |+
T Consensus 65 ~~~~~~~g---~~~v~~~~l~~-~~~Dv~vp~A~-~~~I~~~~~~~l----~~~~v~~~AN~~~ 119 (200)
T cd01075 65 ARAAELFG---ATVVAPEEIYS-VDADVFAPCAL-GGVINDDTIPQL----KAKAIAGAANNQL 119 (200)
T ss_pred HHHHHHcC---CEEEcchhhcc-ccCCEEEeccc-ccccCHHHHHHc----CCCEEEECCcCcc
Confidence 22322221 11112234333 36999995555 569999999999 4679999988 66
No 37
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=96.49 E-value=0.052 Score=54.48 Aligned_cols=124 Identities=18% Similarity=0.117 Sum_probs=88.4
Q ss_pred chhHHHHHHHHHHHHHhCCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEE-EEcccCcccCCCccCCc
Q 012398 307 GTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIW-LVDSKGLIVSSRKESLQ 385 (464)
Q Consensus 307 GTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~-lvD~~GLl~~~r~~~l~ 385 (464)
-||-=+.-++-.+++..+.+|++.||+|.|-|..|.+.|++|.+ .|. +++ +.|++|-|+... .|+
T Consensus 16 aTg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~e-----~Ga-------kvvaVsD~~G~i~~~~--Gld 81 (254)
T cd05313 16 ATGYGLVYFVEEMLKDRNETLKGKRVAISGSGNVAQYAAEKLLE-----LGA-------KVVTLSDSKGYVYDPD--GFT 81 (254)
T ss_pred hhHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHH-----CCC-------EEEEEECCCceEECCC--CCC
Confidence 36666677788888888999999999999999999999999965 353 455 999999998875 354
Q ss_pred hhchh---------------hhhhcC--CCCCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CC
Q 012398 386 HFKKP---------------WAHEHA--PIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSN-PT 447 (464)
Q Consensus 386 ~~k~~---------------fa~~~~--~~~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaLSN-Pt 447 (464)
..+.. |....+ ..-+-.|.. .++.||||=+.. .+.+|++.+..+-+ +.-.||.--+| |+
T Consensus 82 ~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~~~~~~~-~~~~DIliPcAl-~~~I~~~na~~i~~-~~ak~I~EgAN~p~ 158 (254)
T cd05313 82 GEKLAELKEIKEVRRGRVSEYAKKYGTAKYFEGKKPW-EVPCDIAFPCAT-QNEVDAEDAKLLVK-NGCKYVAEGANMPC 158 (254)
T ss_pred HHHHHHHHHHHHhcCCcHHHHhhcCCCCEEeCCcchh-cCCCcEEEeccc-cccCCHHHHHHHHH-cCCEEEEeCCCCCC
Confidence 32211 100000 001222323 457999997765 56999999999943 35779999999 77
No 38
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.48 E-value=0.017 Score=58.83 Aligned_cols=97 Identities=21% Similarity=0.334 Sum_probs=79.5
Q ss_pred chhHHHHHHHHHHHHHhCCCCCcceEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCc
Q 012398 307 GTASVVLAGILSALKLVGGTLADQTFLFLGAGE-AGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQ 385 (464)
Q Consensus 307 GTaaV~LAgll~Alk~~g~~l~d~riv~~GAGs-Ag~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~ 385 (464)
+-.-+|-+|++.-++-.+.+|++.+++|+|+|. .|..+|.+|.. .| ..+++++++.
T Consensus 136 ~~~PcTp~ai~~ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~-----~g-------atVtv~~s~t----------- 192 (286)
T PRK14175 136 TFVPCTPLGIMEILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQ-----KN-------ASVTILHSRS----------- 192 (286)
T ss_pred CCCCCcHHHHHHHHHHcCCCCCCCEEEEECCCchhHHHHHHHHHH-----CC-------CeEEEEeCCc-----------
Confidence 445778899999999999999999999999988 99999999964 24 3577787641
Q ss_pred hhchhhhhhcCCCCCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCC
Q 012398 386 HFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPT 447 (464)
Q Consensus 386 ~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaLSNPt 447 (464)
.+|.+.++. +|++|...+.++.|++++++ +.-+|+=++.|-
T Consensus 193 -------------~~l~~~~~~--ADIVIsAvg~p~~i~~~~vk------~gavVIDvGi~~ 233 (286)
T PRK14175 193 -------------KDMASYLKD--ADVIVSAVGKPGLVTKDVVK------EGAVIIDVGNTP 233 (286)
T ss_pred -------------hhHHHHHhh--CCEEEECCCCCcccCHHHcC------CCcEEEEcCCCc
Confidence 258888887 99999999999999999874 456888777653
No 39
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.46 E-value=0.022 Score=57.72 Aligned_cols=109 Identities=19% Similarity=0.293 Sum_probs=82.7
Q ss_pred chhHHHHHHHHHHHHHhCCCCCcceEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCc
Q 012398 307 GTASVVLAGILSALKLVGGTLADQTFLFLGAGE-AGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQ 385 (464)
Q Consensus 307 GTaaV~LAgll~Alk~~g~~l~d~riv~~GAGs-Ag~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~ 385 (464)
..+-.|-.|++..++-.+.+++.+++|++|+|- +|-++|.+|.. .| | .+.+++++
T Consensus 137 ~~~p~T~~gii~~L~~~~i~l~Gk~vvViG~gg~vGkpia~~L~~-----~g-----a--tVtv~~~~------------ 192 (283)
T PRK14192 137 AYGSATPAGIMRLLKAYNIELAGKHAVVVGRSAILGKPMAMMLLN-----AN-----A--TVTICHSR------------ 192 (283)
T ss_pred cccCCcHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHh-----CC-----C--EEEEEeCC------------
Confidence 446777799999999999999999999999997 99999999864 24 2 68888762
Q ss_pred hhchhhhhhcCCCCCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEc-CCCC--CC-CCCCHHHHhc
Q 012398 386 HFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFAL-SNPT--SQ-SECTAEEAYT 459 (464)
Q Consensus 386 ~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaL-SNPt--~~-~E~tpedA~~ 459 (464)
..+|.+.++. +|++|-+.+.++.|+.++++ +.-+|+=. .||. .. -++.+|++.+
T Consensus 193 ------------t~~L~~~~~~--aDIvI~AtG~~~~v~~~~lk------~gavViDvg~n~~~~~~~GDvd~~~~~~ 250 (283)
T PRK14192 193 ------------TQNLPELVKQ--ADIIVGAVGKPELIKKDWIK------QGAVVVDAGFHPRDGGGVGDIELQGIEE 250 (283)
T ss_pred ------------chhHHHHhcc--CCEEEEccCCCCcCCHHHcC------CCCEEEEEEEeecCCCCcccccHHHhhc
Confidence 1246666775 99999999989899998874 45677655 3774 11 2566666554
No 40
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.38 E-value=0.024 Score=57.38 Aligned_cols=105 Identities=21% Similarity=0.265 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHhCCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchh
Q 012398 311 VVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKP 390 (464)
Q Consensus 311 V~LAgll~Alk~~g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~ 390 (464)
++-+++..|++..+..+...|++|+|+|.+|..++..+.. .|. +++++|++- . +..
T Consensus 134 ~aegav~~a~~~~~~~l~g~kvlViG~G~iG~~~a~~L~~-----~Ga-------~V~v~~r~~----~--------~~~ 189 (296)
T PRK08306 134 TAEGAIMMAIEHTPITIHGSNVLVLGFGRTGMTLARTLKA-----LGA-------NVTVGARKS----A--------HLA 189 (296)
T ss_pred HHHHHHHHHHHhCCCCCCCCEEEEECCcHHHHHHHHHHHH-----CCC-------EEEEEECCH----H--------HHH
Confidence 3334566777778889999999999999999999988864 252 688888851 1 111
Q ss_pred hhhhc----CCCCCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC
Q 012398 391 WAHEH----APIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSN 445 (464)
Q Consensus 391 fa~~~----~~~~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaLSN 445 (464)
.++.. -...++.+.++. .|++|-++ +...+++++++.|. +..+|+=++.
T Consensus 190 ~~~~~G~~~~~~~~l~~~l~~--aDiVI~t~-p~~~i~~~~l~~~~---~g~vIIDla~ 242 (296)
T PRK08306 190 RITEMGLSPFHLSELAEEVGK--IDIIFNTI-PALVLTKEVLSKMP---PEALIIDLAS 242 (296)
T ss_pred HHHHcCCeeecHHHHHHHhCC--CCEEEECC-ChhhhhHHHHHcCC---CCcEEEEEcc
Confidence 11110 112367788875 99999865 44578999999996 5667775654
No 41
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=96.32 E-value=0.013 Score=62.28 Aligned_cols=111 Identities=19% Similarity=0.331 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHhCCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhch
Q 012398 310 SVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKK 389 (464)
Q Consensus 310 aV~LAgll~Alk~~g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~ 389 (464)
+|+-+|+=-|.+.. .++++.|++|+|||.+|-.+|+.|.. .|. ++|+++++. .+|...+ ..
T Consensus 163 Sv~~~Av~la~~~~-~~l~~kkvlviGaG~~a~~va~~L~~-----~g~------~~I~V~nRt----~~ra~~L---a~ 223 (414)
T PRK13940 163 SVAFSAITLAKRQL-DNISSKNVLIIGAGQTGELLFRHVTA-----LAP------KQIMLANRT----IEKAQKI---TS 223 (414)
T ss_pred CHHHHHHHHHHHHh-cCccCCEEEEEcCcHHHHHHHHHHHH-----cCC------CEEEEECCC----HHHHHHH---HH
Confidence 34444444444444 35889999999999999999988854 353 579988884 2221112 11
Q ss_pred hhh-hhcCCCCCHHHHHhcCCCcEEEeccCCCC-CCCHHHHHHHHcCCCCcE-EEEcCCCC
Q 012398 390 PWA-HEHAPIKSLLDAVKAIKPTMLMGTSGVGK-TFTKEVVEAMASFNEKPV-IFALSNPT 447 (464)
Q Consensus 390 ~fa-~~~~~~~~L~e~v~~vkptvLIG~S~~~g-~ft~evv~~Ma~~~erPI-IFaLSNPt 447 (464)
.|. ....+..+|.+++.. .|++|-+++.+. +||++.++ .+|+ |+=||.|-
T Consensus 224 ~~~~~~~~~~~~l~~~l~~--aDiVI~aT~a~~~vi~~~~~~------~~~~~~iDLavPR 276 (414)
T PRK13940 224 AFRNASAHYLSELPQLIKK--ADIIIAAVNVLEYIVTCKYVG------DKPRVFIDISIPQ 276 (414)
T ss_pred HhcCCeEecHHHHHHHhcc--CCEEEECcCCCCeeECHHHhC------CCCeEEEEeCCCC
Confidence 221 011123457777776 999998887664 77877652 4565 46799995
No 42
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=96.11 E-value=0.035 Score=51.88 Aligned_cols=114 Identities=25% Similarity=0.270 Sum_probs=70.1
Q ss_pred hhHHHHHHHHHHHHHhCCCCCcceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCch
Q 012398 308 TASVVLAGILSALKLVGGTLADQTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQH 386 (464)
Q Consensus 308 TaaV~LAgll~Alk~~g~~l~d~riv~~GA-GsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~ 386 (464)
||+.+++.+..+++..|..+++.+++++|+ |..|..+++.+... | .++++++++ .++ +..
T Consensus 7 ta~aav~~~~~~l~~~~~~l~~~~vlVlGgtG~iG~~~a~~l~~~-----g-------~~V~l~~R~----~~~---~~~ 67 (194)
T cd01078 7 TAAAAVAAAGKALELMGKDLKGKTAVVLGGTGPVGQRAAVLLARE-----G-------ARVVLVGRD----LER---AQK 67 (194)
T ss_pred HHHHHHHHHHHHHHHhCcCCCCCEEEEECCCCHHHHHHHHHHHHC-----C-------CEEEEEcCC----HHH---HHH
Confidence 677777888888888889999999999997 99999998888642 3 368888764 111 111
Q ss_pred hchhhhh---------hcCCCCCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCC--cEEEEcCCCC
Q 012398 387 FKKPWAH---------EHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEK--PVIFALSNPT 447 (464)
Q Consensus 387 ~k~~fa~---------~~~~~~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~er--PIIFaLSNPt 447 (464)
....+.. +.....++.+++++ .|++|-.+..+ ..+...... ..+ .+++=++.|-
T Consensus 68 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~diVi~at~~g-~~~~~~~~~----~~~~~~vv~D~~~~~ 132 (194)
T cd01078 68 AADSLRARFGEGVGAVETSDDAARAAAIKG--ADVVFAAGAAG-VELLEKLAW----APKPLAVAADVNAVP 132 (194)
T ss_pred HHHHHHhhcCCcEEEeeCCCHHHHHHHHhc--CCEEEECCCCC-ceechhhhc----ccCceeEEEEccCCC
Confidence 1111110 00111345677775 89999876654 443222211 223 3666666554
No 43
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=96.03 E-value=0.11 Score=56.44 Aligned_cols=123 Identities=18% Similarity=0.188 Sum_probs=85.7
Q ss_pred CCceeecCccchhHHH-------HHHHHHHHHHhCCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEE
Q 012398 297 SHLVFNDDIQGTASVV-------LAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWL 369 (464)
Q Consensus 297 ~~~~FnDDiQGTaaV~-------LAgll~Alk~~g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~l 369 (464)
.+||+|=+---|-++. ++.+-..+|.++..|.+.+++|+|.|..|.++|+.+.. .|+ ++++
T Consensus 215 ~iPV~nv~d~~tk~~aD~~~G~~~s~~d~~~R~~~~~LaGKtVgVIG~G~IGr~vA~rL~a-----~Ga-------~ViV 282 (476)
T PTZ00075 215 LFPAINVNDSVTKSKFDNIYGCRHSLIDGIFRATDVMIAGKTVVVCGYGDVGKGCAQALRG-----FGA-------RVVV 282 (476)
T ss_pred CceEEEeCCcchHHHHHHHHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHH-----CCC-------EEEE
Confidence 6999986554444432 44445556777899999999999999999999998864 253 5777
Q ss_pred EcccCcccCCCccCCchhchhhhhhcCCCCCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCC
Q 012398 370 VDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPT 447 (464)
Q Consensus 370 vD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaLSNPt 447 (464)
+|++-. +. +.... ..-...++.++++. .|++|-+.+..++|+++.++.|. +.-|+.-.+...
T Consensus 283 ~e~dp~----~a--~~A~~-----~G~~~~~leell~~--ADIVI~atGt~~iI~~e~~~~MK---pGAiLINvGr~d 344 (476)
T PTZ00075 283 TEIDPI----CA--LQAAM-----EGYQVVTLEDVVET--ADIFVTATGNKDIITLEHMRRMK---NNAIVGNIGHFD 344 (476)
T ss_pred EeCCch----hH--HHHHh-----cCceeccHHHHHhc--CCEEEECCCcccccCHHHHhccC---CCcEEEEcCCCc
Confidence 766411 10 01000 11112468899986 99999988877899999999996 566777777664
No 44
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=95.87 E-value=0.032 Score=56.21 Aligned_cols=91 Identities=18% Similarity=0.233 Sum_probs=58.3
Q ss_pred HHHHHHHHHHhCCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchh-chhh
Q 012398 313 LAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHF-KKPW 391 (464)
Q Consensus 313 LAgll~Alk~~g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~-k~~f 391 (464)
..|++.+++-.+..++.++++|+|||.||.+++..|.. .|+ ++|+++|+. ..+.+.+... +..+
T Consensus 111 ~~G~~~~l~~~~~~~~~k~vlIlGaGGaaraia~aL~~-----~G~------~~I~I~nR~----~~ka~~la~~l~~~~ 175 (284)
T PRK12549 111 WSGFAESFRRGLPDASLERVVQLGAGGAGAAVAHALLT-----LGV------ERLTIFDVD----PARAAALADELNARF 175 (284)
T ss_pred HHHHHHHHHhhccCccCCEEEEECCcHHHHHHHHHHHH-----cCC------CEEEEECCC----HHHHHHHHHHHHhhC
Confidence 35677888766667888999999999999999998875 364 579999984 2332222111 1111
Q ss_pred hh-hcCCCCCHHHHHhcCCCcEEEeccCCC
Q 012398 392 AH-EHAPIKSLLDAVKAIKPTMLMGTSGVG 420 (464)
Q Consensus 392 a~-~~~~~~~L~e~v~~vkptvLIG~S~~~ 420 (464)
.. ......++.+.++. +|++|.++..+
T Consensus 176 ~~~~~~~~~~~~~~~~~--aDiVInaTp~G 203 (284)
T PRK12549 176 PAARATAGSDLAAALAA--ADGLVHATPTG 203 (284)
T ss_pred CCeEEEeccchHhhhCC--CCEEEECCcCC
Confidence 10 00112355666665 99999887544
No 45
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=95.83 E-value=0.029 Score=58.50 Aligned_cols=101 Identities=21% Similarity=0.289 Sum_probs=65.7
Q ss_pred CCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhhh----cCCCCCHH
Q 012398 327 LADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE----HAPIKSLL 402 (464)
Q Consensus 327 l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~----~~~~~~L~ 402 (464)
+...+++|+|+|.+|.++++.+.. .|. ++.++|++ ..+ +......|... ......|.
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~-----lGa-------~V~v~d~~----~~~---~~~l~~~~g~~v~~~~~~~~~l~ 225 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANG-----LGA-------TVTILDIN----IDR---LRQLDAEFGGRIHTRYSNAYEIE 225 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHH-----CCC-------eEEEEECC----HHH---HHHHHHhcCceeEeccCCHHHHH
Confidence 567889999999999999998864 252 58888874 111 11111122110 01113578
Q ss_pred HHHhcCCCcEEEeccCC-----CCCCCHHHHHHHHcCCCCcEEEEcCC-CCCCCC
Q 012398 403 DAVKAIKPTMLMGTSGV-----GKTFTKEVVEAMASFNEKPVIFALSN-PTSQSE 451 (464)
Q Consensus 403 e~v~~vkptvLIG~S~~-----~g~ft~evv~~Ma~~~erPIIFaLSN-Pt~~~E 451 (464)
++++. +|++|.+... +.++++++++.|. ++.+|+-+|- |.-..|
T Consensus 226 ~~l~~--aDvVI~a~~~~g~~~p~lit~~~l~~mk---~g~vIvDva~d~GG~~e 275 (370)
T TIGR00518 226 DAVKR--ADLLIGAVLIPGAKAPKLVSNSLVAQMK---PGAVIVDVAIDQGGCVE 275 (370)
T ss_pred HHHcc--CCEEEEccccCCCCCCcCcCHHHHhcCC---CCCEEEEEecCCCCCcc
Confidence 88875 9999987532 3468999999995 5678887773 333344
No 46
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=95.80 E-value=0.022 Score=60.76 Aligned_cols=105 Identities=18% Similarity=0.321 Sum_probs=67.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHH-hcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhhh-cCC-----CCCHH
Q 012398 330 QTFLFLGAGEAGTGIAELIALEMSK-QTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE-HAP-----IKSLL 402 (464)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~a~~~-~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~-~~~-----~~~L~ 402 (464)
.||+|+||||+ -.-.|+..+.+ .+.++ ...|||+|-+ .+|.+.+...-+.+++. ..+ ..++.
T Consensus 1 ~KI~iIGgGS~---~tp~li~~l~~~~~~l~----~~ei~L~Did----~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~ 69 (425)
T cd05197 1 VKIAIIGGGSS---FTPELVSGLLKTPEELP----ISEVTLYDID----EERLDIILTIAKRYVEEVGADIKFEKTMDLE 69 (425)
T ss_pred CEEEEECCchH---hHHHHHHHHHcChhhCC----CCEEEEEcCC----HHHHHHHHHHHHHHHHhhCCCeEEEEeCCHH
Confidence 48999999996 34344444433 22343 5789999964 44422222222233332 112 25899
Q ss_pred HHHhcCCCcEEEec--------------------------cCCCCCCC--------HHHHHHHHcCCCCcEEEEcCCCC
Q 012398 403 DAVKAIKPTMLMGT--------------------------SGVGKTFT--------KEVVEAMASFNEKPVIFALSNPT 447 (464)
Q Consensus 403 e~v~~vkptvLIG~--------------------------S~~~g~ft--------~evv~~Ma~~~erPIIFaLSNPt 447 (464)
+|+++ +|.+|-. .++||.|. .++++.|.++|+..+|+-.|||.
T Consensus 70 ~Al~g--ADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~P~a~lin~TNP~ 146 (425)
T cd05197 70 DAIID--ADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLSPDAWYLNFTNPA 146 (425)
T ss_pred HHhCC--CCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhCCCcEEEecCChH
Confidence 99998 9988822 23344433 48999999999999999999998
No 47
>PRK05086 malate dehydrogenase; Provisional
Probab=95.77 E-value=0.058 Score=55.06 Aligned_cols=105 Identities=22% Similarity=0.254 Sum_probs=68.2
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhhh-cCCCCCHHHHHhc
Q 012398 330 QTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE-HAPIKSLLDAVKA 407 (464)
Q Consensus 330 ~riv~~GA-GsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~-~~~~~~L~e~v~~ 407 (464)
.||+|+|| |..|..+|.+|... .+. ...+.++|++-. ..+..-++.+. .....- .....++.+++++
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~----~~~-----~~el~L~d~~~~-~~g~alDl~~~-~~~~~i~~~~~~d~~~~l~~ 69 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQ----LPA-----GSELSLYDIAPV-TPGVAVDLSHI-PTAVKIKGFSGEDPTPALEG 69 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC----CCC-----ccEEEEEecCCC-CcceehhhhcC-CCCceEEEeCCCCHHHHcCC
Confidence 48999999 99999999887542 122 246889997522 11110012211 000000 0012477888887
Q ss_pred CCCcEEEeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEEcCCCC
Q 012398 408 IKPTMLMGTSGVG---KT-----------FTKEVVEAMASFNEKPVIFALSNPT 447 (464)
Q Consensus 408 vkptvLIG~S~~~---g~-----------ft~evv~~Ma~~~erPIIFaLSNPt 447 (464)
.|++|=+.+.+ |. ..+++++.|.+++.+.+|+-.|||.
T Consensus 70 --~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~ 121 (312)
T PRK05086 70 --ADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPV 121 (312)
T ss_pred --CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence 99988666653 21 5678999999999999999999998
No 48
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=95.71 E-value=0.032 Score=49.46 Aligned_cols=108 Identities=21% Similarity=0.340 Sum_probs=68.6
Q ss_pred HHHHHHHHHhCCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhh
Q 012398 314 AGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAH 393 (464)
Q Consensus 314 Agll~Alk~~g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~ 393 (464)
.|+.+|++..+.++++.+++|+|+|..|..+++.+.+. | ..+++++|++ .++ .....+.+..
T Consensus 4 ~g~~~a~~~~~~~~~~~~i~iiG~G~~g~~~a~~l~~~-----g------~~~v~v~~r~----~~~---~~~~~~~~~~ 65 (155)
T cd01065 4 LGFVRALEEAGIELKGKKVLILGAGGAARAVAYALAEL-----G------AAKIVIVNRT----LEK---AKALAERFGE 65 (155)
T ss_pred HHHHHHHHhhCCCCCCCEEEEECCcHHHHHHHHHHHHC-----C------CCEEEEEcCC----HHH---HHHHHHHHhh
Confidence 58899999988889999999999999988888887542 3 2578888874 111 2221222211
Q ss_pred h--cCCCCCHHHHHhcCCCcEEEeccCCCC------CCCHHHHHHHHcCCCCcEEEEcC-CCC
Q 012398 394 E--HAPIKSLLDAVKAIKPTMLMGTSGVGK------TFTKEVVEAMASFNEKPVIFALS-NPT 447 (464)
Q Consensus 394 ~--~~~~~~L~e~v~~vkptvLIG~S~~~g------~ft~evv~~Ma~~~erPIIFaLS-NPt 447 (464)
. .....++.++++. +|++|-+...+- .|.+.. + .+..+|+=+| +|.
T Consensus 66 ~~~~~~~~~~~~~~~~--~Dvvi~~~~~~~~~~~~~~~~~~~---~---~~~~~v~D~~~~~~ 120 (155)
T cd01065 66 LGIAIAYLDLEELLAE--ADLIINTTPVGMKPGDELPLPPSL---L---KPGGVVYDVVYNPL 120 (155)
T ss_pred cccceeecchhhcccc--CCEEEeCcCCCCCCCCCCCCCHHH---c---CCCCEEEEcCcCCC
Confidence 1 0123467777765 999998765442 132222 2 3567888775 454
No 49
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=95.66 E-value=0.098 Score=47.97 Aligned_cols=90 Identities=18% Similarity=0.219 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHhCCCCCcceEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhc
Q 012398 310 SVVLAGILSALKLVGGTLADQTFLFLGAGE-AGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFK 388 (464)
Q Consensus 310 aV~LAgll~Alk~~g~~l~d~riv~~GAGs-Ag~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k 388 (464)
-.+..|++..++..|.+++.++|+++|.+. .|.-+|.+|. + .|. .+..+|++.
T Consensus 9 p~t~~a~~~ll~~~~~~~~gk~v~VvGrs~~vG~pla~lL~----~-~ga-------tV~~~~~~t-------------- 62 (140)
T cd05212 9 SPVAKAVKELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQ----R-DGA-------TVYSCDWKT-------------- 62 (140)
T ss_pred ccHHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHH----H-CCC-------EEEEeCCCC--------------
Confidence 457889999999999999999999999864 4444555543 2 353 466777641
Q ss_pred hhhhhhcCCCCCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEc
Q 012398 389 KPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFAL 443 (464)
Q Consensus 389 ~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaL 443 (464)
.+|.++++. +|++|-..+.++.|+.|||+ +.-+|..-
T Consensus 63 ----------~~l~~~v~~--ADIVvsAtg~~~~i~~~~ik------pGa~Vidv 99 (140)
T cd05212 63 ----------IQLQSKVHD--ADVVVVGSPKPEKVPTEWIK------PGATVINC 99 (140)
T ss_pred ----------cCHHHHHhh--CCEEEEecCCCCccCHHHcC------CCCEEEEc
Confidence 268888997 99999999999999999997 45566643
No 50
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=95.57 E-value=0.15 Score=48.27 Aligned_cols=119 Identities=16% Similarity=0.304 Sum_probs=74.8
Q ss_pred cchhHHHHHHHHHHHHHhCCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCc
Q 012398 306 QGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQ 385 (464)
Q Consensus 306 QGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~ 385 (464)
.||+--++-|++ |.++..|...++|++|-|--|-|||+.+... | -++.++|.+ .+.
T Consensus 3 yG~g~S~~d~i~---r~t~~~l~Gk~vvV~GYG~vG~g~A~~lr~~-----G-------a~V~V~e~D---------Pi~ 58 (162)
T PF00670_consen 3 YGTGQSLVDGIM---RATNLMLAGKRVVVIGYGKVGKGIARALRGL-----G-------ARVTVTEID---------PIR 58 (162)
T ss_dssp HHHHHHHHHHHH---HHH-S--TTSEEEEE--SHHHHHHHHHHHHT-----T--------EEEEE-SS---------HHH
T ss_pred cccchhHHHHHH---hcCceeeCCCEEEEeCCCcccHHHHHHHhhC-----C-------CEEEEEECC---------hHH
Confidence 477777777776 4688999999999999999999999998653 4 256766653 111
Q ss_pred hhchhhhhhcCCCCCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHH
Q 012398 386 HFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEA 457 (464)
Q Consensus 386 ~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpedA 457 (464)
.-|.. -+.-+..++.|+++. +|++|-+++...+++.|.++.|. +.-|+.-..- ..-|+.-+..
T Consensus 59 alqA~--~dGf~v~~~~~a~~~--adi~vtaTG~~~vi~~e~~~~mk---dgail~n~Gh--~d~Eid~~~L 121 (162)
T PF00670_consen 59 ALQAA--MDGFEVMTLEEALRD--ADIFVTATGNKDVITGEHFRQMK---DGAILANAGH--FDVEIDVDAL 121 (162)
T ss_dssp HHHHH--HTT-EEE-HHHHTTT---SEEEE-SSSSSSB-HHHHHHS----TTEEEEESSS--STTSBTHHHH
T ss_pred HHHhh--hcCcEecCHHHHHhh--CCEEEECCCCccccCHHHHHHhc---CCeEEeccCc--CceeEeeccc
Confidence 11110 011123579999987 99999999988899999999996 5667665553 2367776653
No 51
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=95.56 E-value=0.02 Score=47.12 Aligned_cols=94 Identities=12% Similarity=0.203 Sum_probs=62.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEE-cccCcccCCCccCCchhchhhhhhcCCCC-CHHHHHhcC
Q 012398 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLV-DSKGLIVSSRKESLQHFKKPWAHEHAPIK-SLLDAVKAI 408 (464)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lv-D~~GLl~~~r~~~l~~~k~~fa~~~~~~~-~L~e~v~~v 408 (464)
||.|+|+|..|.++++.+... |. ...+|+++ +++ .+...+.++.|.. .-.. +..|+++.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~-----g~----~~~~v~~~~~r~-------~~~~~~~~~~~~~--~~~~~~~~~~~~~- 61 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLAS-----GI----KPHEVIIVSSRS-------PEKAAELAKEYGV--QATADDNEEAAQE- 61 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHT-----TS-----GGEEEEEEESS-------HHHHHHHHHHCTT--EEESEEHHHHHHH-
T ss_pred CEEEECCCHHHHHHHHHHHHC-----CC----CceeEEeeccCc-------HHHHHHHHHhhcc--ccccCChHHhhcc-
Confidence 789999999999999988763 54 34677755 552 1222222222221 0113 79999996
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCC
Q 012398 409 KPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNP 446 (464)
Q Consensus 409 kptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaLSNP 446 (464)
+|++| ++..| ..-+++++.+....+..+|.-++||
T Consensus 62 -advvi-lav~p-~~~~~v~~~i~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 62 -ADVVI-LAVKP-QQLPEVLSEIPHLLKGKLVISIAAG 96 (96)
T ss_dssp -TSEEE-E-S-G-GGHHHHHHHHHHHHTTSEEEEESTT
T ss_pred -CCEEE-EEECH-HHHHHHHHHHhhccCCCEEEEeCCC
Confidence 99998 66656 5667788888666789999988886
No 52
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=95.34 E-value=0.011 Score=53.54 Aligned_cols=105 Identities=22% Similarity=0.357 Sum_probs=66.2
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc-CcccCCCccCCchhchhhhhhcCCCCCHHHHHhc
Q 012398 330 QTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK-GLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKA 407 (464)
Q Consensus 330 ~riv~~GA-GsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~-GLl~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~ 407 (464)
.||.|+|| |..|..+|-+|+.. |+ .+.|.++|.+ .... +..-++.+..-+.-+...-..+..+++++
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~-----~l-----~~ei~L~D~~~~~~~-g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~ 69 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQ-----GL-----ADEIVLIDINEDKAE-GEALDLSHASAPLPSPVRITSGDYEALKD 69 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHT-----TT-----SSEEEEEESSHHHHH-HHHHHHHHHHHGSTEEEEEEESSGGGGTT
T ss_pred CEEEEECCCChHHHHHHHHHHhC-----CC-----CCceEEeccCcccce-eeehhhhhhhhhccccccccccccccccc
Confidence 38999999 99999999988763 55 3569999986 2111 11011222111110111111356677886
Q ss_pred CCCcEEEeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEEcCCCC
Q 012398 408 IKPTMLMGTSGVG---KT-----------FTKEVVEAMASFNEKPVIFALSNPT 447 (464)
Q Consensus 408 vkptvLIG~S~~~---g~-----------ft~evv~~Ma~~~erPIIFaLSNPt 447 (464)
+|++|=+.+.+ |- +-+++.+.+++++.+.+++-.|||.
T Consensus 70 --aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNPv 121 (141)
T PF00056_consen 70 --ADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNPV 121 (141)
T ss_dssp --ESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSSH
T ss_pred --ccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCcH
Confidence 99999555443 21 3357788888999999999999997
No 53
>PTZ00325 malate dehydrogenase; Provisional
Probab=95.32 E-value=0.099 Score=53.93 Aligned_cols=107 Identities=22% Similarity=0.269 Sum_probs=69.4
Q ss_pred CCcceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhh-hhhcCCCCCHHHH
Q 012398 327 LADQTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPW-AHEHAPIKSLLDA 404 (464)
Q Consensus 327 l~d~riv~~GA-GsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~f-a~~~~~~~~L~e~ 404 (464)
++-.||+|.|| |..|..+|..|+. .|+ ...+.++|.+ .. .+-.-+|.+....+ -.......+..++
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~-----~~~-----~~elvL~Di~-~~-~g~a~Dl~~~~~~~~v~~~td~~~~~~~ 73 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQ-----NPH-----VSELSLYDIV-GA-PGVAADLSHIDTPAKVTGYADGELWEKA 73 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhc-----CCC-----CCEEEEEecC-CC-cccccchhhcCcCceEEEecCCCchHHH
Confidence 34569999999 9999999987752 243 3579999992 21 11111232211110 0011111344788
Q ss_pred HhcCCCcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEEcCCCC
Q 012398 405 VKAIKPTMLMGTSGVGKT--------------FTKEVVEAMASFNEKPVIFALSNPT 447 (464)
Q Consensus 405 v~~vkptvLIG~S~~~g~--------------ft~evv~~Ma~~~erPIIFaLSNPt 447 (464)
+++ .|++|=+.+.+.. ..+++++.|.+++.+.||+.-|||.
T Consensus 74 l~g--aDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPv 128 (321)
T PTZ00325 74 LRG--ADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPV 128 (321)
T ss_pred hCC--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH
Confidence 988 9988855554322 4578999999999999999999998
No 54
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=95.27 E-value=0.079 Score=55.26 Aligned_cols=109 Identities=12% Similarity=0.165 Sum_probs=67.4
Q ss_pred chhHHHHHH--HHHHHHHhCCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCC
Q 012398 307 GTASVVLAG--ILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESL 384 (464)
Q Consensus 307 GTaaV~LAg--ll~Alk~~g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l 384 (464)
|.++|.++. +..+ +.. .+|++.+++++|||..|--+|+.|.. .|. ++|+++.+.-. +
T Consensus 152 ~~~~vSv~s~av~~~-~~~-~~l~~k~vLvIGaGem~~l~a~~L~~-----~g~------~~i~v~nRt~~----~---- 210 (338)
T PRK00676 152 PYAEVTIESVVQQEL-RRR-QKSKKASLLFIGYSEINRKVAYYLQR-----QGY------SRITFCSRQQL----T---- 210 (338)
T ss_pred CCCCcCHHHHHHHHH-HHh-CCccCCEEEEEcccHHHHHHHHHHHH-----cCC------CEEEEEcCCcc----c----
Confidence 444444443 3333 333 56999999999999998888887765 353 57999888641 1
Q ss_pred chhchhhhhhcCCCCCHHHHHh-cCCCcEEEec----cCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCC
Q 012398 385 QHFKKPWAHEHAPIKSLLDAVK-AIKPTMLMGT----SGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQS 450 (464)
Q Consensus 385 ~~~k~~fa~~~~~~~~L~e~v~-~vkptvLIG~----S~~~g~ft~evv~~Ma~~~erPIIFaLSNPt~~~ 450 (464)
.+|.... .+++. ..++||+|-. +++...++.+.++..- +| ++|=||+|-.-.
T Consensus 211 ----~~~~~~~------~~~~~~~~~~DvVIs~t~~Tas~~p~i~~~~~~~~~---~r-~~iDLAvPRdId 267 (338)
T PRK00676 211 ----LPYRTVV------REELSFQDPYDVIFFGSSESAYAFPHLSWESLADIP---DR-IVFDFNVPRTFP 267 (338)
T ss_pred ----cchhhhh------hhhhhcccCCCEEEEcCCcCCCCCceeeHHHHhhcc---Cc-EEEEecCCCCCc
Confidence 2222110 01111 1258999964 3444577888766421 23 999999998654
No 55
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=95.26 E-value=0.044 Score=53.96 Aligned_cols=105 Identities=22% Similarity=0.303 Sum_probs=68.5
Q ss_pred EEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhhh--cCCCCCHHHHHhcC
Q 012398 332 FLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE--HAPIKSLLDAVKAI 408 (464)
Q Consensus 332 iv~~GA-GsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~--~~~~~~L~e~v~~v 408 (464)
|.|+|| |..|.++|..++.. |. .....++++|.+.-..+....++.+...++ .. -....++.+++++
T Consensus 1 I~IIGagG~vG~~ia~~l~~~-----~~---~~~~el~L~D~~~~~l~~~~~dl~~~~~~~-~~~~i~~~~d~~~~~~~- 70 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADG-----SV---LLAIELVLYDIDEEKLKGVAMDLQDAVEPL-ADIKVSITDDPYEAFKD- 70 (263)
T ss_pred CEEECCCChHHHHHHHHHHhC-----CC---CcceEEEEEeCCcccchHHHHHHHHhhhhc-cCcEEEECCchHHHhCC-
Confidence 578999 99999999987652 41 123589999986411111111122222221 11 0113578899988
Q ss_pred CCcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEEcCCCC
Q 012398 409 KPTMLMGTSGVGKT--------------FTKEVVEAMASFNEKPVIFALSNPT 447 (464)
Q Consensus 409 kptvLIG~S~~~g~--------------ft~evv~~Ma~~~erPIIFaLSNPt 447 (464)
+|++|=+.+.++. +-+++++.|.+++++.+++-.|||.
T Consensus 71 -aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~ 122 (263)
T cd00650 71 -ADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPV 122 (263)
T ss_pred -CCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH
Confidence 9999865544322 4678999999999999999999998
No 56
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=95.18 E-value=0.045 Score=54.93 Aligned_cols=96 Identities=19% Similarity=0.149 Sum_probs=59.8
Q ss_pred HHHHHHHHHhCC--CCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhh
Q 012398 314 AGILSALKLVGG--TLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPW 391 (464)
Q Consensus 314 Agll~Alk~~g~--~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~f 391 (464)
.|++.+++-.+. .+++.+++++|||.||-+|+..|.+ .|. ++|+++++. .+|...|.+ .|
T Consensus 108 ~G~~~~l~~~~~~~~~~~k~vlvlGaGGaarai~~aL~~-----~G~------~~i~I~nRt----~~ka~~La~---~~ 169 (282)
T TIGR01809 108 DGIAGALANIGKFEPLAGFRGLVIGAGGTSRAAVYALAS-----LGV------TDITVINRN----PDKLSRLVD---LG 169 (282)
T ss_pred HHHHHHHHhhCCccccCCceEEEEcCcHHHHHHHHHHHH-----cCC------CeEEEEeCC----HHHHHHHHH---Hh
Confidence 456777776663 6889999999999999999887764 354 589999873 233222221 12
Q ss_pred hhhc--CCCC---CHHHHHhcCCCcEEEeccCCCCCCCHHHHH
Q 012398 392 AHEH--APIK---SLLDAVKAIKPTMLMGTSGVGKTFTKEVVE 429 (464)
Q Consensus 392 a~~~--~~~~---~L~e~v~~vkptvLIG~S~~~g~ft~evv~ 429 (464)
.... .... .+.+++. ++|++|.++..+-.++.+.+.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~--~~DiVInaTp~g~~~~~~~l~ 210 (282)
T TIGR01809 170 VQVGVITRLEGDSGGLAIEK--AAEVLVSTVPADVPADYVDLF 210 (282)
T ss_pred hhcCcceeccchhhhhhccc--CCCEEEECCCCCCCCCHHHhh
Confidence 1100 0111 2334444 489999998877556655543
No 57
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.09 E-value=0.085 Score=53.85 Aligned_cols=92 Identities=15% Similarity=0.188 Sum_probs=73.6
Q ss_pred hHHHHHHHHHHHHHhCCCCCcceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchh
Q 012398 309 ASVVLAGILSALKLVGGTLADQTFLFLGAG-EAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHF 387 (464)
Q Consensus 309 aaV~LAgll~Alk~~g~~l~d~riv~~GAG-sAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~ 387 (464)
.-+|-+|++.=|+-.+.+++..++|++|.| ..|.-+|.+|.. .|. .+.+|+++
T Consensus 137 ~PcTp~avi~lL~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~-----~gA-------tVtv~hs~-------------- 190 (285)
T PRK14191 137 VPATPMGVMRLLKHYHIEIKGKDVVIIGASNIVGKPLAMLMLN-----AGA-------SVSVCHIL-------------- 190 (285)
T ss_pred CCCcHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHH-----CCC-------EEEEEeCC--------------
Confidence 457888889999999999999999999999 999999999964 243 35566442
Q ss_pred chhhhhhcCCCCCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 012398 388 KKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALS 444 (464)
Q Consensus 388 k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaLS 444 (464)
..+|.+.+++ +|++|...+.++.+++++|+ +..+|+=..
T Consensus 191 ----------t~~l~~~~~~--ADIvV~AvG~p~~i~~~~vk------~GavVIDvG 229 (285)
T PRK14191 191 ----------TKDLSFYTQN--ADIVCVGVGKPDLIKASMVK------KGAVVVDIG 229 (285)
T ss_pred ----------cHHHHHHHHh--CCEEEEecCCCCcCCHHHcC------CCcEEEEee
Confidence 0236788887 99999999999999999995 556776544
No 58
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=95.01 E-value=0.075 Score=53.67 Aligned_cols=103 Identities=16% Similarity=0.221 Sum_probs=65.6
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhhhc--CCCCCHHHHHhcC
Q 012398 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEH--APIKSLLDAVKAI 408 (464)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~~--~~~~~L~e~v~~v 408 (464)
||+|+|+|.+|..+|..++. .|+ ...|+++|++-=...+-..+|.+.. .+.... -...+.+ .+++
T Consensus 2 kI~IIGaG~vG~~~a~~l~~-----~g~-----~~ei~l~D~~~~~~~~~a~dL~~~~-~~~~~~~~i~~~~~~-~l~~- 68 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVN-----QGI-----ADELVLIDINEEKAEGEALDLEDAL-AFLPSPVKIKAGDYS-DCKD- 68 (306)
T ss_pred EEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCcchhhHhHhhHHHHh-hccCCCeEEEcCCHH-HhCC-
Confidence 89999999999999998764 354 2579999985222111111121111 111100 0113344 4665
Q ss_pred CCcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEEcCCCC
Q 012398 409 KPTMLMGTSGVGKT--------------FTKEVVEAMASFNEKPVIFALSNPT 447 (464)
Q Consensus 409 kptvLIG~S~~~g~--------------ft~evv~~Ma~~~erPIIFaLSNPt 447 (464)
.|++|=+.+.+.. +=+++.+.|.+++..-+|+-.|||.
T Consensus 69 -aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsNP~ 120 (306)
T cd05291 69 -ADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPV 120 (306)
T ss_pred -CCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecChH
Confidence 9999977766411 1267888899999999999999998
No 59
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=94.95 E-value=0.071 Score=52.90 Aligned_cols=128 Identities=21% Similarity=0.287 Sum_probs=88.7
Q ss_pred CccchhHHHHHHHHHHHHHhCCC-CCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCcc
Q 012398 304 DIQGTASVVLAGILSALKLVGGT-LADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKE 382 (464)
Q Consensus 304 DiQGTaaV~LAgll~Alk~~g~~-l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~ 382 (464)
--+-||-=+..++-.+++..+.. ++..||+|-|.|..|...|+.|.+. |. +=+-+.|++|.|+...
T Consensus 6 ~~~aTg~GV~~~~~~~~~~~~~~~l~g~~v~IqGfG~VG~~~a~~l~~~-----Ga------~vv~vsD~~G~i~~~~-- 72 (244)
T PF00208_consen 6 RSEATGYGVAYAIEAALEHLGGDSLEGKRVAIQGFGNVGSHAARFLAEL-----GA------KVVAVSDSSGAIYDPD-- 72 (244)
T ss_dssp TTTHHHHHHHHHHHHHHHHTTCHSSTTCEEEEEESSHHHHHHHHHHHHT-----TE------EEEEEEESSEEEEETT--
T ss_pred CCcchHHHHHHHHHHHHHHcCCCCcCCCEEEEECCCHHHHHHHHHHHHc-----CC------EEEEEecCceEEEcCC--
Confidence 34557777888888999997766 9999999999999999999999763 42 3456779999998653
Q ss_pred CCchhc-hhhhhhcCC-CCCHH-------------HHHhcCCCcEEEeccCCCCCCCHHHHH-HHHcCCCCcEEEEcCC-
Q 012398 383 SLQHFK-KPWAHEHAP-IKSLL-------------DAVKAIKPTMLMGTSGVGKTFTKEVVE-AMASFNEKPVIFALSN- 445 (464)
Q Consensus 383 ~l~~~k-~~fa~~~~~-~~~L~-------------e~v~~vkptvLIG~S~~~g~ft~evv~-~Ma~~~erPIIFaLSN- 445 (464)
.++... ..+...... +..+. +.+=.++.||||=+ +.++.+|++.+. .+. +.-+||.--+|
T Consensus 73 Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~il~~~~DiliP~-A~~~~I~~~~~~~~i~--~~akiIvegAN~ 149 (244)
T PF00208_consen 73 GLDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDDEILSVDCDILIPC-ALGNVINEDNAPSLIK--SGAKIIVEGANG 149 (244)
T ss_dssp EEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHCHGGTSSSSEEEEE-SSSTSBSCHHHCHCHH--TT-SEEEESSSS
T ss_pred CchHHHHHHHHHHhCCcccccccccccceeEeccccccccccccEEEEc-CCCCeeCHHHHHHHHh--ccCcEEEeCcch
Confidence 232211 111111111 22111 14455699999988 557799999998 774 24789999999
Q ss_pred CC
Q 012398 446 PT 447 (464)
Q Consensus 446 Pt 447 (464)
|+
T Consensus 150 p~ 151 (244)
T PF00208_consen 150 PL 151 (244)
T ss_dssp SB
T ss_pred hc
Confidence 55
No 60
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=94.81 E-value=0.07 Score=56.87 Aligned_cols=107 Identities=17% Similarity=0.287 Sum_probs=66.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhhh-cCC-----CCCHHH
Q 012398 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE-HAP-----IKSLLD 403 (464)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~-~~~-----~~~L~e 403 (464)
.||+|+||||+ -...++-..+.+...++ ...|||+|-+- ..|-+.+...-+.+.+. ..+ ..++.+
T Consensus 1 ~KI~iIGaGS~--~tp~li~~l~~~~~~l~----~~ei~L~Did~---~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~~ 71 (419)
T cd05296 1 MKLTIIGGGSS--YTPELIEGLIRRYEELP----VTELVLVDIDE---EEKLEIVGALAKRMVKKAGLPIKVHLTTDRRE 71 (419)
T ss_pred CEEEEECCchH--hHHHHHHHHHhccccCC----CCEEEEecCCh---HHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHH
Confidence 48999999996 44444433332223332 47899999852 22211111111222222 112 258999
Q ss_pred HHhcCCCcEEEeccCCCCC----------------------------------CCHHHHHHHHcCCCCcEEEEcCCCC
Q 012398 404 AVKAIKPTMLMGTSGVGKT----------------------------------FTKEVVEAMASFNEKPVIFALSNPT 447 (464)
Q Consensus 404 ~v~~vkptvLIG~S~~~g~----------------------------------ft~evv~~Ma~~~erPIIFaLSNPt 447 (464)
|+++ +|.+|-.-.++|. .=.++++.|.++|++.+|+-.|||.
T Consensus 72 al~g--adfVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~Pda~lin~TNP~ 147 (419)
T cd05296 72 ALEG--ADFVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELAPDAWLINFTNPA 147 (419)
T ss_pred HhCC--CCEEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHCCCeEEEEecCHH
Confidence 9998 8988844444431 2238889999999999999999998
No 61
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.73 E-value=0.11 Score=52.97 Aligned_cols=93 Identities=15% Similarity=0.192 Sum_probs=77.0
Q ss_pred hhHHHHHHHHHHHHHhCCCCCcceEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCch
Q 012398 308 TASVVLAGILSALKLVGGTLADQTFLFLGAGE-AGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQH 386 (464)
Q Consensus 308 TaaV~LAgll~Alk~~g~~l~d~riv~~GAGs-Ag~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~ 386 (464)
-.-+|-+|++..++-.+.+|+..+++|+|-|- .|..+|.||.. .| ..+.+|+|+
T Consensus 138 ~~PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVG~Pla~lL~~-----~~-------atVtv~hs~------------- 192 (285)
T PRK10792 138 LRPCTPRGIMTLLERYGIDTYGLNAVVVGASNIVGRPMSLELLL-----AG-------CTVTVCHRF------------- 192 (285)
T ss_pred CCCCCHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHH-----CC-------CeEEEEECC-------------
Confidence 34678899999999999999999999999998 99999998864 24 246777664
Q ss_pred hchhhhhhcCCCCCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 012398 387 FKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALS 444 (464)
Q Consensus 387 ~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaLS 444 (464)
..+|.+.+++ +|++|-+.+.++.|+.++|+ +.-+|+=..
T Consensus 193 -----------T~~l~~~~~~--ADIvi~avG~p~~v~~~~vk------~gavVIDvG 231 (285)
T PRK10792 193 -----------TKNLRHHVRN--ADLLVVAVGKPGFIPGEWIK------PGAIVIDVG 231 (285)
T ss_pred -----------CCCHHHHHhh--CCEEEEcCCCcccccHHHcC------CCcEEEEcc
Confidence 1358888987 99999999999999999997 567887666
No 62
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=94.68 E-value=0.21 Score=48.56 Aligned_cols=109 Identities=19% Similarity=0.297 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHhC---------CCCCcceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCC
Q 012398 310 SVVLAGILSALKLVG---------GTLADQTFLFLGAG-EAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSS 379 (464)
Q Consensus 310 aV~LAgll~Alk~~g---------~~l~d~riv~~GAG-sAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~ 379 (464)
-+|-.|++.=|+-.+ .+++.++++|+|-+ ..|.-+|.||.. .| ..+.+||++|.....
T Consensus 34 PCTp~avi~lL~~~~i~~~~~~~~~~l~GK~vvVIGrS~iVGkPla~lL~~-----~~-------AtVti~~~~~~~~~~ 101 (197)
T cd01079 34 PCTPLAIVKILEFLGIYNKILPYGNRLYGKTITIINRSEVVGRPLAALLAN-----DG-------ARVYSVDINGIQVFT 101 (197)
T ss_pred CCCHHHHHHHHHHhCCcccccccCCCCCCCEEEEECCCccchHHHHHHHHH-----CC-------CEEEEEecCcccccc
Confidence 345566666666554 48999999999986 467778877754 24 358899999988866
Q ss_pred CccCCchhchhhhhhcCCCCCHHHHHhcCCCcEEEeccCCCCC-CCHHHHHHHHcCCCCcEEE
Q 012398 380 RKESLQHFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKT-FTKEVVEAMASFNEKPVIF 441 (464)
Q Consensus 380 r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~-ft~evv~~Ma~~~erPIIF 441 (464)
+...+.+.+.+. .+.-.+|.|.++. +|++|-.-+.++. ++.|||+ +..||+
T Consensus 102 ~~~~~~hs~t~~---~~~~~~l~~~~~~--ADIVIsAvG~~~~~i~~d~ik------~GavVI 153 (197)
T cd01079 102 RGESIRHEKHHV---TDEEAMTLDCLSQ--SDVVITGVPSPNYKVPTELLK------DGAICI 153 (197)
T ss_pred cccccccccccc---cchhhHHHHHhhh--CCEEEEccCCCCCccCHHHcC------CCcEEE
Confidence 533221111100 0111248899997 9999999999997 8999998 455664
No 63
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=94.60 E-value=0.12 Score=49.49 Aligned_cols=104 Identities=20% Similarity=0.218 Sum_probs=66.2
Q ss_pred CCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCC-------ccCCchhchhhhh----
Q 012398 325 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSR-------KESLQHFKKPWAH---- 393 (464)
Q Consensus 325 ~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r-------~~~l~~~k~~fa~---- 393 (464)
++|++.||+++|+|..|.-+|+.|+.+ |+ ++|+++|.+=+=..+- .+++-..|..-+.
T Consensus 17 ~kl~~~~VlviG~GglGs~ia~~La~~-----Gv------~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~ 85 (202)
T TIGR02356 17 QRLLNSHVLIIGAGGLGSPAALYLAGA-----GV------GTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLR 85 (202)
T ss_pred HHhcCCCEEEECCCHHHHHHHHHHHHc-----CC------CeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHH
Confidence 578999999999999999999999764 64 6899999873211100 0011111111111
Q ss_pred h-cC---------CC--CCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEc
Q 012398 394 E-HA---------PI--KSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFAL 443 (464)
Q Consensus 394 ~-~~---------~~--~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaL 443 (464)
. .+ .. .++.+.++. .|++|.+... .=++.++..++.....|.|++-
T Consensus 86 ~~np~v~i~~~~~~i~~~~~~~~~~~--~D~Vi~~~d~--~~~r~~l~~~~~~~~ip~i~~~ 143 (202)
T TIGR02356 86 ELNSDIQVTALKERVTAENLELLINN--VDLVLDCTDN--FATRYLINDACVALGTPLISAA 143 (202)
T ss_pred HhCCCCEEEEehhcCCHHHHHHHHhC--CCEEEECCCC--HHHHHHHHHHHHHcCCCEEEEE
Confidence 0 00 11 235566665 8999987643 3466678888888889999864
No 64
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=94.51 E-value=0.095 Score=53.62 Aligned_cols=115 Identities=15% Similarity=0.225 Sum_probs=71.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhhhc-CCCCCHHHHHhcC
Q 012398 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEH-APIKSLLDAVKAI 408 (464)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~~-~~~~~L~e~v~~v 408 (464)
.||.|+|||..|..+|-+|+. .|+ ...|.++|.+-=..++-.-+|.+.. +|-... -..++. +.+++
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~-----~~~-----~~el~L~D~~~~~~~g~~~Dl~~~~-~~~~~~~i~~~~~-~~~~~- 73 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVN-----QGI-----ADELVIIDINKEKAEGDAMDLSHAV-PFTSPTKIYAGDY-SDCKD- 73 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCCchhHHHHHHHHhhc-cccCCeEEEeCCH-HHhCC-
Confidence 599999999999999998864 365 3579999984221111111122221 221110 011344 45776
Q ss_pred CCcEEEeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhccc
Q 012398 409 KPTMLMGTSGVG---KT-----------FTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWS 461 (464)
Q Consensus 409 kptvLIG~S~~~---g~-----------ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpedA~~wT 461 (464)
+|++|=+.+.+ |- +=+++++.|.+++...+|+-.|||. ++...-+++++
T Consensus 74 -adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsNP~---d~~~~~~~k~s 136 (315)
T PRK00066 74 -ADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPV---DILTYATWKLS 136 (315)
T ss_pred -CCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCcH---HHHHHHHHHHh
Confidence 99999666553 21 1256788899999999999999998 44444455544
No 65
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=94.49 E-value=0.19 Score=54.99 Aligned_cols=108 Identities=20% Similarity=0.226 Sum_probs=63.9
Q ss_pred CCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCcc---CC------------chhchh
Q 012398 326 TLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKE---SL------------QHFKKP 390 (464)
Q Consensus 326 ~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~---~l------------~~~k~~ 390 (464)
.....||+|+|||.+|++.+..... .| | +++.+|.+- .|.+ .+ ......
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~-----lG-----A--~V~a~D~~~----~rle~aeslGA~~v~i~~~e~~~~~~g 225 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGS-----LG-----A--IVRAFDTRP----EVAEQVESMGAEFLELDFEEEGGSGDG 225 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHH-----CC-----C--EEEEEeCCH----HHHHHHHHcCCeEEEeccccccccccc
Confidence 3458999999999999998776643 35 3 488888741 1100 00 001122
Q ss_pred hhhhcCCC------CCHHHHHhcCCCcEEEeccCCCC-----CCCHHHHHHHHcCCCCcEEEEcCCCC-CCCCCCH
Q 012398 391 WAHEHAPI------KSLLDAVKAIKPTMLMGTSGVGK-----TFTKEVVEAMASFNEKPVIFALSNPT-SQSECTA 454 (464)
Q Consensus 391 fa~~~~~~------~~L~e~v~~vkptvLIG~S~~~g-----~ft~evv~~Ma~~~erPIIFaLSNPt-~~~E~tp 454 (464)
|++...+. ..+.+.++ ++|++|.+++.+| +++++.++.|. +.-+|.=++-|. ..+|++.
T Consensus 226 ya~~~s~~~~~~~~~~~~~~~~--gaDVVIetag~pg~~aP~lit~~~v~~mk---pGgvIVdvg~~~GG~~e~t~ 296 (509)
T PRK09424 226 YAKVMSEEFIKAEMALFAEQAK--EVDIIITTALIPGKPAPKLITAEMVASMK---PGSVIVDLAAENGGNCELTV 296 (509)
T ss_pred hhhhcchhHHHHHHHHHHhccC--CCCEEEECCCCCcccCcchHHHHHHHhcC---CCCEEEEEccCCCCCccccc
Confidence 33321110 01122223 4999999999866 67999999996 455666677653 3345553
No 66
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=94.31 E-value=0.091 Score=56.37 Aligned_cols=105 Identities=18% Similarity=0.276 Sum_probs=67.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHh-cCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhhh-cCC-----CCCHH
Q 012398 330 QTFLFLGAGEAGTGIAELIALEMSKQ-TKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE-HAP-----IKSLL 402 (464)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~a~~~~-~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~-~~~-----~~~L~ 402 (464)
.||+|+||||+ -.-.|+..+.+. ..++ ...|+|+|-+ .+|-+.+...-+.+++. ..+ ..++.
T Consensus 1 ~KI~iIGaGS~---~tp~li~~l~~~~~~l~----~~ei~L~DId----~~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr~ 69 (437)
T cd05298 1 FKIVIAGGGST---YTPGIVKSLLDRKEDFP----LRELVLYDID----AERQEKVAEAVKILFKENYPEIKFVYTTDPE 69 (437)
T ss_pred CeEEEECCcHH---HHHHHHHHHHhCcccCC----CCEEEEECCC----HHHHHHHHHHHHHHHHhhCCCeEEEEECCHH
Confidence 48999999996 444555545432 2343 4789999975 33322122222233322 112 25899
Q ss_pred HHHhcCCCcEEE---------------------ecc-----CCCCC--------CCHHHHHHHHcCCCCcEEEEcCCCC
Q 012398 403 DAVKAIKPTMLM---------------------GTS-----GVGKT--------FTKEVVEAMASFNEKPVIFALSNPT 447 (464)
Q Consensus 403 e~v~~vkptvLI---------------------G~S-----~~~g~--------ft~evv~~Ma~~~erPIIFaLSNPt 447 (464)
||+++ +|.+| |+- ++||. +-.++++.|.+.|++.+++-.|||.
T Consensus 70 eAl~g--ADfVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~pda~lin~tNP~ 146 (437)
T cd05298 70 EAFTD--ADFVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYSPDAWILNYSNPA 146 (437)
T ss_pred HHhCC--CCEEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHCCCeEEEEecCcH
Confidence 99998 88887 221 23332 2368899999999999999999998
No 67
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.17 E-value=0.24 Score=51.06 Aligned_cols=110 Identities=19% Similarity=0.158 Sum_probs=70.0
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCc--ccCCCccCCchhchhhhhhcCCCCCHHHHHhc
Q 012398 331 TFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGL--IVSSRKESLQHFKKPWAHEHAPIKSLLDAVKA 407 (464)
Q Consensus 331 riv~~GA-GsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GL--l~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~ 407 (464)
||.|.|| |..|..+|..|+. .|+-.+.-.-.+.|+|.+.- ..++..-+|.+..-++.+...-..+..+++++
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~-----~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~ 76 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIAS-----GELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKD 76 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHh-----CCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCC
Confidence 7999999 9999999987764 35532222337999998741 11111112333322332211111467888998
Q ss_pred CCCcEEEeccCCC---CC-----------CCHHHHHHHHcCC-CCcEEEEcCCCC
Q 012398 408 IKPTMLMGTSGVG---KT-----------FTKEVVEAMASFN-EKPVIFALSNPT 447 (464)
Q Consensus 408 vkptvLIG~S~~~---g~-----------ft~evv~~Ma~~~-erPIIFaLSNPt 447 (464)
.|++|=+.+.+ |- +-+++++.|++++ +..||+-.|||.
T Consensus 77 --aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv 129 (323)
T cd00704 77 --VDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPA 129 (323)
T ss_pred --CCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcH
Confidence 99888555443 31 2367888999994 999999999997
No 68
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.04 E-value=0.2 Score=51.19 Aligned_cols=95 Identities=17% Similarity=0.303 Sum_probs=74.7
Q ss_pred hhHHHHHHHHHHHHHhCCCCCcceEEEeCcchH-HHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCch
Q 012398 308 TASVVLAGILSALKLVGGTLADQTFLFLGAGEA-GTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQH 386 (464)
Q Consensus 308 TaaV~LAgll~Alk~~g~~l~d~riv~~GAGsA-g~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~ 386 (464)
-.-+|-.|++.-|+-.+.++++.+++++|.|.- |.-+|.+|.. .|. .+.+|+++
T Consensus 137 ~~PcTp~aii~lL~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~-----~~a-------tVt~~hs~------------- 191 (285)
T PRK14189 137 FRPCTPYGVMKMLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQ-----AGA-------TVTICHSK------------- 191 (285)
T ss_pred CcCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHH-----CCC-------EEEEecCC-------------
Confidence 346788899999999999999999999999988 9999999864 243 45555442
Q ss_pred hchhhhhhcCCCCCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC-CC
Q 012398 387 FKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALS-NP 446 (464)
Q Consensus 387 ~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaLS-NP 446 (464)
..+|.+.+++ +|++|-..+.++.|++++++ +..+|+=.+ |+
T Consensus 192 -----------t~~l~~~~~~--ADIVV~avG~~~~i~~~~ik------~gavVIDVGin~ 233 (285)
T PRK14189 192 -----------TRDLAAHTRQ--ADIVVAAVGKRNVLTADMVK------PGATVIDVGMNR 233 (285)
T ss_pred -----------CCCHHHHhhh--CCEEEEcCCCcCccCHHHcC------CCCEEEEccccc
Confidence 1357788887 99999999999999998887 455776544 44
No 69
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.82 E-value=0.38 Score=49.59 Aligned_cols=94 Identities=15% Similarity=0.268 Sum_probs=77.2
Q ss_pred hHHHHHHHHHHHHHhCCCCCcceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchh
Q 012398 309 ASVVLAGILSALKLVGGTLADQTFLFLGAG-EAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHF 387 (464)
Q Consensus 309 aaV~LAgll~Alk~~g~~l~d~riv~~GAG-sAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~ 387 (464)
.-+|-+|++.=|+-.|.+++.++|+|+|.| ..|..+|.+|... |. .+.+++++ .
T Consensus 139 ~PcTp~aii~lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~-----ga-------tVtv~~~~--------t----- 193 (301)
T PRK14194 139 TPCTPSGCLRLLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQA-----HC-------SVTVVHSR--------S----- 193 (301)
T ss_pred CCCcHHHHHHHHHHhCCCCCCCEEEEECCCCccHHHHHHHHHHC-----CC-------EEEEECCC--------C-----
Confidence 456788889999999999999999999996 9999999999753 53 56777653 0
Q ss_pred chhhhhhcCCCCCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC-CC
Q 012398 388 KKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALS-NP 446 (464)
Q Consensus 388 k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaLS-NP 446 (464)
.++.|+++. +|++|-+-+.++.+++++++ +..||.=+| |+
T Consensus 194 -----------~~l~e~~~~--ADIVIsavg~~~~v~~~~ik------~GaiVIDvgin~ 234 (301)
T PRK14194 194 -----------TDAKALCRQ--ADIVVAAVGRPRLIDADWLK------PGAVVIDVGINR 234 (301)
T ss_pred -----------CCHHHHHhc--CCEEEEecCChhcccHhhcc------CCcEEEEecccc
Confidence 168999987 99999999989999999854 677888888 54
No 70
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=93.81 E-value=0.27 Score=50.56 Aligned_cols=105 Identities=19% Similarity=0.327 Sum_probs=66.2
Q ss_pred CcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhhhc---CCCCCHHHH
Q 012398 328 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEH---APIKSLLDA 404 (464)
Q Consensus 328 ~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~~---~~~~~L~e~ 404 (464)
+-.||.|+|||..|.++|.+++. .|+. .++|+|.+-=......-++.+. ..+.... ...+++ ++
T Consensus 5 ~~~KI~IIGaG~vG~~ia~~la~-----~gl~------~i~LvDi~~~~~~~~~ld~~~~-~~~~~~~~~I~~~~d~-~~ 71 (321)
T PTZ00082 5 KRRKISLIGSGNIGGVMAYLIVL-----KNLG------DVVLFDIVKNIPQGKALDISHS-NVIAGSNSKVIGTNNY-ED 71 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHh-----CCCC------eEEEEeCCCchhhHHHHHHHhh-hhccCCCeEEEECCCH-HH
Confidence 33699999999999999998654 3652 3999997532222111011111 1111111 112466 56
Q ss_pred HhcCCCcEEEeccCCCCC-------------------CCHHHHHHHHcCCCCcEEEEcCCCC
Q 012398 405 VKAIKPTMLMGTSGVGKT-------------------FTKEVVEAMASFNEKPVIFALSNPT 447 (464)
Q Consensus 405 v~~vkptvLIG~S~~~g~-------------------ft~evv~~Ma~~~erPIIFaLSNPt 447 (464)
+++ +|++|=+.+.++. +-.++++.|.+++..-+++--|||.
T Consensus 72 l~~--aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~ 131 (321)
T PTZ00082 72 IAG--SDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPL 131 (321)
T ss_pred hCC--CCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH
Confidence 776 9999965544321 2357888999999888899999998
No 71
>PTZ00117 malate dehydrogenase; Provisional
Probab=93.81 E-value=0.24 Score=50.73 Aligned_cols=105 Identities=20% Similarity=0.345 Sum_probs=66.8
Q ss_pred CcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhhhcCC---CCCHHHH
Q 012398 328 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAP---IKSLLDA 404 (464)
Q Consensus 328 ~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~~~~---~~~L~e~ 404 (464)
+..||.|+|||..|.++|.+++. .|+ ..+.|+|.+-=...+..-++.+. ..+...... ..+++ +
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~-----~~~------~~l~L~Di~~~~~~g~~lDl~~~-~~~~~~~~~i~~~~d~~-~ 70 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQ-----KNL------GDVVLYDVIKGVPQGKALDLKHF-STLVGSNINILGTNNYE-D 70 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHH-----CCC------CeEEEEECCCccchhHHHHHhhh-ccccCCCeEEEeCCCHH-H
Confidence 44599999999999999998764 354 24999997521111111012111 111111111 24666 6
Q ss_pred HhcCCCcEEEeccCCCC--------------CCCHHHHHHHHcCCCCcEEEEcCCCC
Q 012398 405 VKAIKPTMLMGTSGVGK--------------TFTKEVVEAMASFNEKPVIFALSNPT 447 (464)
Q Consensus 405 v~~vkptvLIG~S~~~g--------------~ft~evv~~Ma~~~erPIIFaLSNPt 447 (464)
+++ +|++|=+.+.+. .+-+++.+.|.++++.-+++-.|||.
T Consensus 71 l~~--ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~ 125 (319)
T PTZ00117 71 IKD--SDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPL 125 (319)
T ss_pred hCC--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChH
Confidence 777 999986665442 23458999999999999787789998
No 72
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.74 E-value=0.21 Score=51.39 Aligned_cols=102 Identities=24% Similarity=0.302 Sum_probs=68.8
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhhhcC--CCCCHHHHHhc
Q 012398 331 TFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHA--PIKSLLDAVKA 407 (464)
Q Consensus 331 riv~~GA-GsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~~~--~~~~L~e~v~~ 407 (464)
||.|+|| |..|..+|-.|.. .|+ ...+.|+|.+ +. .+-.-+|.+.. .+.+-.. ...++.+.+++
T Consensus 2 KI~IIGaaG~VG~~~a~~l~~-----~~~-----~~elvLiDi~-~a-~g~alDL~~~~-~~~~i~~~~~~~~~y~~~~d 68 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLKL-----NPL-----VSELALYDIV-NT-PGVAADLSHIN-TPAKVTGYLGPEELKKALKG 68 (310)
T ss_pred EEEEECCCCHHHHHHHHHHHh-----CCC-----CcEEEEEecC-cc-ceeehHhHhCC-CcceEEEecCCCchHHhcCC
Confidence 8999999 9999999987753 355 3579999998 32 22211244332 1111111 11346788887
Q ss_pred CCCcEEEeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEEcCCCC
Q 012398 408 IKPTMLMGTSGVG---KT-----------FTKEVVEAMASFNEKPVIFALSNPT 447 (464)
Q Consensus 408 vkptvLIG~S~~~---g~-----------ft~evv~~Ma~~~erPIIFaLSNPt 447 (464)
.|++|=+++.+ |- .-+++++.+.++++..+|+-.|||.
T Consensus 69 --aDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPv 120 (310)
T cd01337 69 --ADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPV 120 (310)
T ss_pred --CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence 99888555543 31 3357788888999999999999997
No 73
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=93.66 E-value=2.5 Score=45.47 Aligned_cols=178 Identities=22% Similarity=0.221 Sum_probs=119.8
Q ss_pred CCChhhHHHHHHHHHHHHHHhcCCCeeeeeecCCCc--cHHHHHHHHcCC-----Ccee----------ecCccchhHHH
Q 012398 250 RATGQEYAELLQEFMTAVKQNYGEKVLIQFEDFANH--NAFELLSKYSSS-----HLVF----------NDDIQGTASVV 312 (464)
Q Consensus 250 R~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~--~af~iL~ryr~~-----~~~F----------nDDiQGTaaV~ 312 (464)
..+-.|-..|...|++++.+.-||+.-|-=+|++.. .---+.+.|+.- .+|| .+----||-=+
T Consensus 111 ~~S~~E~erl~raf~~~i~~~iGp~~dIpApDvgt~~~~m~wm~dey~~i~g~~~~gv~TGKp~~~GGS~~r~~aTg~Gv 190 (411)
T COG0334 111 GLSDGELERLSRAFGRAIYRLIGPDTDIPAPDVGTNPQDMAWMMDEYSKIVGNSAPGVFTGKPLELGGSLGRSEATGYGV 190 (411)
T ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCcEecccccCCCHHHHHHHHHhhhhhcCCCCcceecCCcccccCCCCCCcccceeh
Confidence 356678889999999999999999999999999862 222355666531 2222 12222244333
Q ss_pred HHHHHHHHHHhCCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhh
Q 012398 313 LAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWA 392 (464)
Q Consensus 313 LAgll~Alk~~g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa 392 (464)
.-+.-.|++..|.+|+..||+|-|.|.+|.-.|+.+.+. | .+=+-+-|++|.|++.. .++..+....
T Consensus 191 ~~~~~~a~~~~g~~l~G~rVaVQG~GNVg~~aa~~l~~~-----G------Akvva~sds~g~i~~~~--Gld~~~l~~~ 257 (411)
T COG0334 191 FYAIREALKALGDDLEGARVAVQGFGNVGQYAAEKLHEL-----G------AKVVAVSDSKGGIYDED--GLDVEALLEL 257 (411)
T ss_pred HHHHHHHHHHcCCCcCCCEEEEECccHHHHHHHHHHHHc-----C------CEEEEEEcCCCceecCC--CCCHHHHHHH
Confidence 333448888889889999999999999999999988652 5 35577789999888863 4553332211
Q ss_pred hh----------cCCCCCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC-CC
Q 012398 393 HE----------HAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSN-PT 447 (464)
Q Consensus 393 ~~----------~~~~~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaLSN-Pt 447 (464)
++ .+.+.+ |.+-.+..||||=+.. .+.+|++-.+...+ + +|.=-+| |+
T Consensus 258 ~~~~~~v~~~~ga~~i~~--~e~~~~~cDIl~PcA~-~n~I~~~na~~l~a---k-~V~EgAN~P~ 316 (411)
T COG0334 258 KERRGSVAEYAGAEYITN--EELLEVDCDILIPCAL-ENVITEDNADQLKA---K-IVVEGANGPT 316 (411)
T ss_pred hhhhhhHHhhcCceEccc--cccccccCcEEccccc-ccccchhhHHHhhh---c-EEEeccCCCC
Confidence 11 011112 3344457899987666 45899988888853 2 8888888 66
No 74
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=93.63 E-value=0.081 Score=48.33 Aligned_cols=85 Identities=19% Similarity=0.305 Sum_probs=50.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhch--hhhhh---cCC---CCCHH
Q 012398 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKK--PWAHE---HAP---IKSLL 402 (464)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~--~fa~~---~~~---~~~L~ 402 (464)
||.|+|||+.|+++|..+... | .++.|.+++.-.. +.++..+. .|... .+. ..+|+
T Consensus 1 KI~ViGaG~~G~AlA~~la~~-----g-------~~V~l~~~~~~~~----~~i~~~~~n~~~~~~~~l~~~i~~t~dl~ 64 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN-----G-------HEVTLWGRDEEQI----EEINETRQNPKYLPGIKLPENIKATTDLE 64 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC-----T-------EEEEEETSCHHHH----HHHHHHTSETTTSTTSBEETTEEEESSHH
T ss_pred CEEEECcCHHHHHHHHHHHHc-----C-------CEEEEEeccHHHH----HHHHHhCCCCCCCCCcccCcccccccCHH
Confidence 789999999999999998763 4 4677776653111 11221111 11111 111 25899
Q ss_pred HHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCC
Q 012398 403 DAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFN 435 (464)
Q Consensus 403 e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~ 435 (464)
+++++ +|++| +..+. .+-+++++.++.+-
T Consensus 65 ~a~~~--ad~Ii-iavPs-~~~~~~~~~l~~~l 93 (157)
T PF01210_consen 65 EALED--ADIII-IAVPS-QAHREVLEQLAPYL 93 (157)
T ss_dssp HHHTT---SEEE-E-S-G-GGHHHHHHHHTTTS
T ss_pred HHhCc--ccEEE-ecccH-HHHHHHHHHHhhcc
Confidence 99987 88776 44433 46688888888754
No 75
>PRK08223 hypothetical protein; Validated
Probab=93.62 E-value=0.16 Score=51.88 Aligned_cols=123 Identities=15% Similarity=0.067 Sum_probs=79.2
Q ss_pred HHHHHHHcCCCceeecCccchhHHHHHHHHHHHHHhCCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeE
Q 012398 288 FELLSKYSSSHLVFNDDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKI 367 (464)
Q Consensus 288 f~iL~ryr~~~~~FnDDiQGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i 367 (464)
|..-++|..++..|..+-| .+|++.||+|+|+|..|.-+|+.|+.+ |+ .+|
T Consensus 4 ~~~~~~ysRq~~~iG~e~Q------------------~kL~~s~VlIvG~GGLGs~va~~LA~a-----GV------G~i 54 (287)
T PRK08223 4 FDYDEAFCRNLGWITPTEQ------------------QRLRNSRVAIAGLGGVGGIHLLTLARL-----GI------GKF 54 (287)
T ss_pred ccHHHHHhhhhhhcCHHHH------------------HHHhcCCEEEECCCHHHHHHHHHHHHh-----CC------CeE
Confidence 6677788766666544432 578999999999999999999999875 64 689
Q ss_pred EEEcccCcccCCCc-------cCCchhchhhhhh----c-C---------CC--CCHHHHHhcCCCcEEEeccCCCCCC-
Q 012398 368 WLVDSKGLIVSSRK-------ESLQHFKKPWAHE----H-A---------PI--KSLLDAVKAIKPTMLMGTSGVGKTF- 423 (464)
Q Consensus 368 ~lvD~~GLl~~~r~-------~~l~~~k~~fa~~----~-~---------~~--~~L~e~v~~vkptvLIG~S~~~g~f- 423 (464)
.++|.+=+=..+-. +++-..|.+-|+. . + .+ .++.+.+++ .|++|=.+--. .|
T Consensus 55 ~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~~l~~~n~~~ll~~--~DlVvD~~D~~-~~~ 131 (287)
T PRK08223 55 TIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPEGIGKENADAFLDG--VDVYVDGLDFF-EFD 131 (287)
T ss_pred EEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEecccCccCHHHHHhC--CCEEEECCCCC-cHH
Confidence 99998743222110 1122223222221 0 1 11 357777876 89988433211 12
Q ss_pred CHHHHHHHHcCCCCcEEEE
Q 012398 424 TKEVVEAMASFNEKPVIFA 442 (464)
Q Consensus 424 t~evv~~Ma~~~erPIIFa 442 (464)
+.-+|-..|.....|.|.+
T Consensus 132 ~r~~ln~~c~~~~iP~V~~ 150 (287)
T PRK08223 132 ARRLVFAACQQRGIPALTA 150 (287)
T ss_pred HHHHHHHHHHHcCCCEEEE
Confidence 6677888888888999986
No 76
>PLN02928 oxidoreductase family protein
Probab=93.58 E-value=0.8 Score=47.59 Aligned_cols=118 Identities=15% Similarity=0.241 Sum_probs=75.0
Q ss_pred chhHHHHHHHHHHHHH----------------hCCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEE
Q 012398 307 GTASVVLAGILSALKL----------------VGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLV 370 (464)
Q Consensus 307 GTaaV~LAgll~Alk~----------------~g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lv 370 (464)
.+|--+++.+|+.+|- .+..|.+.++.|+|.|..|..+|+.+.. .|+ +++.+
T Consensus 121 ~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvGIiG~G~IG~~vA~~l~a-----fG~-------~V~~~ 188 (347)
T PLN02928 121 SCAEMAIYLMLGLLRKQNEMQISLKARRLGEPIGDTLFGKTVFILGYGAIGIELAKRLRP-----FGV-------KLLAT 188 (347)
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHcCCcccccccCCCCCEEEEECCCHHHHHHHHHHhh-----CCC-------EEEEE
Confidence 4556667777766653 2457999999999999999999999864 264 68888
Q ss_pred cccCcccCCCccCCchhc----hhhhhhcCCCCCHHHHHhcCCCcEEEecc----CCCCCCCHHHHHHHHcCCCCcEEEE
Q 012398 371 DSKGLIVSSRKESLQHFK----KPWAHEHAPIKSLLDAVKAIKPTMLMGTS----GVGKTFTKEVVEAMASFNEKPVIFA 442 (464)
Q Consensus 371 D~~GLl~~~r~~~l~~~k----~~fa~~~~~~~~L~e~v~~vkptvLIG~S----~~~g~ft~evv~~Ma~~~erPIIFa 442 (464)
|+.. .......+. .+ ..+........+|.|+++. .|+++-.- ...+.|+++.+..|. +..++.=
T Consensus 189 dr~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~ell~~--aDiVvl~lPlt~~T~~li~~~~l~~Mk---~ga~lIN 260 (347)
T PLN02928 189 RRSW--TSEPEDGLL-IPNGDVDDLVDEKGGHEDIYEFAGE--ADIVVLCCTLTKETAGIVNDEFLSSMK---KGALLVN 260 (347)
T ss_pred CCCC--Chhhhhhhc-cccccccccccccCcccCHHHHHhh--CCEEEECCCCChHhhcccCHHHHhcCC---CCeEEEE
Confidence 8752 111000000 00 0111111134589999987 89988542 223689999999995 5566665
Q ss_pred cC
Q 012398 443 LS 444 (464)
Q Consensus 443 LS 444 (464)
.|
T Consensus 261 va 262 (347)
T PLN02928 261 IA 262 (347)
T ss_pred CC
Confidence 54
No 77
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.53 E-value=0.31 Score=49.88 Aligned_cols=92 Identities=18% Similarity=0.305 Sum_probs=73.9
Q ss_pred hhHHHHHHHHHHHHHhCCCCCcceEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCch
Q 012398 308 TASVVLAGILSALKLVGGTLADQTFLFLGAGE-AGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQH 386 (464)
Q Consensus 308 TaaV~LAgll~Alk~~g~~l~d~riv~~GAGs-Ag~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~ 386 (464)
-.-+|-.|++..++-.+.+|+..++||+|.+- .|..+|.+|.. .|. .+.+|+++
T Consensus 143 ~~PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~-----~~a-------tVtv~hs~------------- 197 (287)
T PRK14176 143 LVPCTPHGVIRALEEYGVDIEGKNAVIVGHSNVVGKPMAAMLLN-----RNA-------TVSVCHVF------------- 197 (287)
T ss_pred CCCCcHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHH-----CCC-------EEEEEecc-------------
Confidence 44678899999999999999999999999998 89999998864 242 46666642
Q ss_pred hchhhhhhcCCCCCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEc
Q 012398 387 FKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFAL 443 (464)
Q Consensus 387 ~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaL 443 (464)
.++|.+.+++ +|++|-..+.++.+++++|+ +..+|.=.
T Consensus 198 -----------T~~l~~~~~~--ADIvv~AvG~p~~i~~~~vk------~gavVIDv 235 (287)
T PRK14176 198 -----------TDDLKKYTLD--ADILVVATGVKHLIKADMVK------EGAVIFDV 235 (287)
T ss_pred -----------CCCHHHHHhh--CCEEEEccCCccccCHHHcC------CCcEEEEe
Confidence 1247888887 99999999999999999887 55677543
No 78
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.49 E-value=0.22 Score=50.77 Aligned_cols=94 Identities=18% Similarity=0.319 Sum_probs=74.6
Q ss_pred chhHHHHHHHHHHHHHhCCCCCcceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCc
Q 012398 307 GTASVVLAGILSALKLVGGTLADQTFLFLGAG-EAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQ 385 (464)
Q Consensus 307 GTaaV~LAgll~Alk~~g~~l~d~riv~~GAG-sAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~ 385 (464)
+-.-+|-.|++.=++-.+.+++..+++++|-+ .-|.-+|.++.. .| ..+..++++-
T Consensus 130 ~~~PcTp~av~~ll~~~~i~l~Gk~V~ViGrs~~vGrpla~lL~~-----~~-------atVtv~hs~t----------- 186 (279)
T PRK14178 130 GFAPCTPNGIMTLLHEYKISIAGKRAVVVGRSIDVGRPMAALLLN-----AD-------ATVTICHSKT----------- 186 (279)
T ss_pred CCCCCCHHHHHHHHHHcCCCCCCCEEEEECCCccccHHHHHHHHh-----CC-------CeeEEEecCh-----------
Confidence 34567888899999999999999999999998 888888888754 23 2466666530
Q ss_pred hhchhhhhhcCCCCCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 012398 386 HFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALS 444 (464)
Q Consensus 386 ~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaLS 444 (464)
.+|.+.++. +|++|+.-+.++.+|+++|+ +..+|.=.+
T Consensus 187 -------------~~L~~~~~~--ADIvI~Avgk~~lv~~~~vk------~GavVIDVg 224 (279)
T PRK14178 187 -------------ENLKAELRQ--ADILVSAAGKAGFITPDMVK------PGATVIDVG 224 (279)
T ss_pred -------------hHHHHHHhh--CCEEEECCCcccccCHHHcC------CCcEEEEee
Confidence 358899987 99999999988999999984 666776555
No 79
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.43 E-value=0.54 Score=48.43 Aligned_cols=121 Identities=17% Similarity=0.182 Sum_probs=72.2
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcc--cCCCccCCchhchhhhhhcCCCCCHHHHHh
Q 012398 330 QTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLI--VSSRKESLQHFKKPWAHEHAPIKSLLDAVK 406 (464)
Q Consensus 330 ~riv~~GA-GsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl--~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~ 406 (464)
-||+|.|| |..|..+|..|+. .|+-.-+....++++|.+.-. ..+..-++.+..-++..+.....++.++++
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~-----~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~ 77 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAK-----GDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFK 77 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHh-----CcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhC
Confidence 37999999 9999999998865 243100011379999985421 111100122211122111111257889999
Q ss_pred cCCCcEEEeccCCCC--CCC------------HHHHHHHHcCC-CCcEEEEcCCCCCCCCCCHHHHhcc
Q 012398 407 AIKPTMLMGTSGVGK--TFT------------KEVVEAMASFN-EKPVIFALSNPTSQSECTAEEAYTW 460 (464)
Q Consensus 407 ~vkptvLIG~S~~~g--~ft------------~evv~~Ma~~~-erPIIFaLSNPt~~~E~tpedA~~w 460 (464)
+ +|++|=+.+.+. --| +++++.|.+++ ..-||+-.|||. .+..--++++
T Consensus 78 ~--aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv---D~~t~~~~k~ 141 (325)
T cd01336 78 D--VDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPA---NTNALILLKY 141 (325)
T ss_pred C--CCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcH---HHHHHHHHHH
Confidence 7 999985555432 123 67778888886 699999999997 3344444444
No 80
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=93.34 E-value=0.17 Score=52.71 Aligned_cols=102 Identities=17% Similarity=0.208 Sum_probs=65.4
Q ss_pred CCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCC---C-----ccCCchhchhhhh---
Q 012398 325 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSS---R-----KESLQHFKKPWAH--- 393 (464)
Q Consensus 325 ~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~---r-----~~~l~~~k~~fa~--- 393 (464)
++|++.||+|+|+|..|..||+.|+.+ |+ ++|.++|.+= +... | .+++-..|..-+.
T Consensus 131 ~~l~~~~VlvvG~GG~Gs~ia~~La~~-----Gv------g~i~lvD~d~-v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l 198 (376)
T PRK08762 131 RRLLEARVLLIGAGGLGSPAALYLAAA-----GV------GTLGIVDHDV-VDRSNLQRQILHTEDRVGQPKVDSAAQRL 198 (376)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCCE-ecchhhccccccchhhCCCcHHHHHHHHH
Confidence 367889999999999999999999764 64 6899999862 1110 0 0011111211111
Q ss_pred --hcCC---------C--CCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEE
Q 012398 394 --EHAP---------I--KSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFA 442 (464)
Q Consensus 394 --~~~~---------~--~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFa 442 (464)
-.+. . .++.+.++. .|++|-++... =+..++-.++.....|+|++
T Consensus 199 ~~~np~v~v~~~~~~~~~~~~~~~~~~--~D~Vv~~~d~~--~~r~~ln~~~~~~~ip~i~~ 256 (376)
T PRK08762 199 AALNPDVQVEAVQERVTSDNVEALLQD--VDVVVDGADNF--PTRYLLNDACVKLGKPLVYG 256 (376)
T ss_pred HHHCCCCEEEEEeccCChHHHHHHHhC--CCEEEECCCCH--HHHHHHHHHHHHcCCCEEEE
Confidence 0111 1 135566665 89999877633 25667888888889999887
No 81
>PRK06223 malate dehydrogenase; Reviewed
Probab=93.31 E-value=0.23 Score=49.76 Aligned_cols=97 Identities=21% Similarity=0.361 Sum_probs=61.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhhh-----c-CC---CCC
Q 012398 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE-----H-AP---IKS 400 (464)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~-----~-~~---~~~ 400 (464)
.||.|+|||..|.++|..+.. .|+ . .++++|.+ .++ +......+.+. . .. ..+
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~-----~~~-----~-ev~L~D~~----~~~---~~~~~~dl~~~~~~~~~~~~i~~~~d 64 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLAL-----KEL-----G-DVVLFDIV----EGV---PQGKALDIAEAAPVEGFDTKITGTND 64 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----CCC-----e-EEEEEECC----Cch---hHHHHHHHHhhhhhcCCCcEEEeCCC
Confidence 489999999999999998764 244 2 79999983 111 11111111110 0 01 235
Q ss_pred HHHHHhcCCCcEEEeccCCC---C-----------CCCHHHHHHHHcCCCCcEEEEcCCCC
Q 012398 401 LLDAVKAIKPTMLMGTSGVG---K-----------TFTKEVVEAMASFNEKPVIFALSNPT 447 (464)
Q Consensus 401 L~e~v~~vkptvLIG~S~~~---g-----------~ft~evv~~Ma~~~erPIIFaLSNPt 447 (464)
. +++++ +|++|=+.+.| | ..-+++++.|.+++...+++-.|||.
T Consensus 65 ~-~~~~~--aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~ 122 (307)
T PRK06223 65 Y-EDIAG--SDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPV 122 (307)
T ss_pred H-HHHCC--CCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH
Confidence 6 55776 99998333222 2 23467888898999999888889997
No 82
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=93.29 E-value=0.72 Score=48.82 Aligned_cols=53 Identities=25% Similarity=0.377 Sum_probs=45.0
Q ss_pred hhHHHHHHHHHHHHHhCCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcc
Q 012398 308 TASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDS 372 (464)
Q Consensus 308 TaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~ 372 (464)
.|=-+++.+++..|..|..|.+.+|.|+|.|..|..+|+.+.. .|+ +++.+|.
T Consensus 95 VAE~v~~~lL~l~r~~g~~l~gktvGIIG~G~IG~~va~~l~a-----~G~-------~V~~~Dp 147 (381)
T PRK00257 95 VVDYVLGSLLTLAEREGVDLAERTYGVVGAGHVGGRLVRVLRG-----LGW-------KVLVCDP 147 (381)
T ss_pred HHHHHHHHHHHHhcccCCCcCcCEEEEECCCHHHHHHHHHHHH-----CCC-------EEEEECC
Confidence 3445789999999999999999999999999999999999864 365 5788886
No 83
>PRK08328 hypothetical protein; Provisional
Probab=93.28 E-value=0.053 Score=52.96 Aligned_cols=120 Identities=18% Similarity=0.272 Sum_probs=71.4
Q ss_pred HHHHcCCCceeecCccchhHHHHHHHHHHHHHhCCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEE
Q 012398 291 LSKYSSSHLVFNDDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLV 370 (464)
Q Consensus 291 L~ryr~~~~~FnDDiQGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lv 370 (464)
++||..++..|..+. -.+|++.||+|+|+|..|..||+.|+.+ |+ .+|.++
T Consensus 7 ~~ry~Rq~~~~g~~~------------------q~~L~~~~VlIiG~GGlGs~ia~~La~~-----Gv------g~i~lv 57 (231)
T PRK08328 7 LERYDRQIMIFGVEG------------------QEKLKKAKVAVVGVGGLGSPVAYYLAAA-----GV------GRILLI 57 (231)
T ss_pred HHHHhhHHHhcCHHH------------------HHHHhCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEE
Confidence 578877776665432 2467889999999999999999999864 64 689999
Q ss_pred cccCcccCC--C-----ccCCchh-chhhhh----h-cCC---------C--CCHHHHHhcCCCcEEEeccCCCCCCCHH
Q 012398 371 DSKGLIVSS--R-----KESLQHF-KKPWAH----E-HAP---------I--KSLLDAVKAIKPTMLMGTSGVGKTFTKE 426 (464)
Q Consensus 371 D~~GLl~~~--r-----~~~l~~~-k~~fa~----~-~~~---------~--~~L~e~v~~vkptvLIG~S~~~g~ft~e 426 (464)
|.+=+=..+ | .+++-.. |..-|+ . .+. . .++.+.++. .|++|-+.-.. -++.
T Consensus 58 D~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~~~~~~~~~~~~~l~~--~D~Vid~~d~~--~~r~ 133 (231)
T PRK08328 58 DEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIETFVGRLSEENIDEVLKG--VDVIVDCLDNF--ETRY 133 (231)
T ss_pred cCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCEEEEEeccCCHHHHHHHHhc--CCEEEECCCCH--HHHH
Confidence 975211110 0 0011111 111111 0 000 1 234555654 77777665432 3666
Q ss_pred HHHHHHcCCCCcEEEEc
Q 012398 427 VVEAMASFNEKPVIFAL 443 (464)
Q Consensus 427 vv~~Ma~~~erPIIFaL 443 (464)
++..++.....|+|.+-
T Consensus 134 ~l~~~~~~~~ip~i~g~ 150 (231)
T PRK08328 134 LLDDYAHKKGIPLVHGA 150 (231)
T ss_pred HHHHHHHHcCCCEEEEe
Confidence 77777777778877654
No 84
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=93.25 E-value=0.22 Score=51.55 Aligned_cols=103 Identities=19% Similarity=0.273 Sum_probs=66.1
Q ss_pred CCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCC--Cc-----cCCc--hhchhhh---
Q 012398 325 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSS--RK-----ESLQ--HFKKPWA--- 392 (464)
Q Consensus 325 ~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~--r~-----~~l~--~~k~~fa--- 392 (464)
++|++.||+|+|+|..|..+|+.|+.+ |+ .+|.++|.+=+=..+ |. ++.. ..|..-|
T Consensus 20 ~~L~~~~VlIiG~GglGs~va~~La~a-----Gv------g~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~ 88 (338)
T PRK12475 20 RKIREKHVLIVGAGALGAANAEALVRA-----GI------GKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEH 88 (338)
T ss_pred HhhcCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHH
Confidence 578999999999999999999999875 64 689999997421110 10 0000 0011101
Q ss_pred -hh-cC---------CC--CCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEE
Q 012398 393 -HE-HA---------PI--KSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFA 442 (464)
Q Consensus 393 -~~-~~---------~~--~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFa 442 (464)
+. .+ .. .++.+.+++ .|++|-++.- .-+..++-.++.....|.|++
T Consensus 89 l~~inp~v~i~~~~~~~~~~~~~~~~~~--~DlVid~~D~--~~~r~~in~~~~~~~ip~i~~ 147 (338)
T PRK12475 89 LRKINSEVEIVPVVTDVTVEELEELVKE--VDLIIDATDN--FDTRLLINDLSQKYNIPWIYG 147 (338)
T ss_pred HHHHCCCcEEEEEeccCCHHHHHHHhcC--CCEEEEcCCC--HHHHHHHHHHHHHcCCCEEEE
Confidence 10 01 11 246777775 8999988742 236677788887788999976
No 85
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=93.19 E-value=0.17 Score=51.57 Aligned_cols=114 Identities=20% Similarity=0.262 Sum_probs=67.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhhhcCC---CCCHHHHHh
Q 012398 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAP---IKSLLDAVK 406 (464)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~~~~---~~~L~e~v~ 406 (464)
.||.|+|+|..|.++|-.++. .|+ + +++++|..--+.+++.-++.+ ...+...... ..++.+ ++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~-----~g~----~--~VvlvDi~~~l~~g~a~d~~~-~~~~~~~~~~i~~t~d~~~-~~ 68 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAE-----KEL----A--DLVLLDVVEGIPQGKALDMYE-ASPVGGFDTKVTGTNNYAD-TA 68 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHH-----cCC----C--eEEEEeCCCChhHHHHHhhhh-hhhccCCCcEEEecCCHHH-hC
Confidence 489999999999999998764 254 2 599999832222211000110 0001000011 246776 66
Q ss_pred cCCCcEEEeccCCC---C-----------CCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhccc
Q 012398 407 AIKPTMLMGTSGVG---K-----------TFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTWS 461 (464)
Q Consensus 407 ~vkptvLIG~S~~~---g-----------~ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpedA~~wT 461 (464)
+ .|++|=+.+.+ | .+=+++++.|.+++.+.+|+-.|||. .+...-+++++
T Consensus 69 ~--aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~---di~t~~~~~~s 132 (305)
T TIGR01763 69 N--SDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPL---DAMTYVAWQKS 132 (305)
T ss_pred C--CCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHH
Confidence 5 89887444432 1 12345677788899999999999998 44444444443
No 86
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=93.18 E-value=0.21 Score=48.38 Aligned_cols=38 Identities=29% Similarity=0.310 Sum_probs=33.1
Q ss_pred CCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 325 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 325 ~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
.+|++.+|+++|+|..|..||+.|+.+ |+ .+|.++|.+
T Consensus 24 ~~L~~~~V~ViG~GglGs~ia~~La~~-----Gv------g~i~lvD~D 61 (212)
T PRK08644 24 EKLKKAKVGIAGAGGLGSNIAVALARS-----GV------GNLKLVDFD 61 (212)
T ss_pred HHHhCCCEEEECcCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 468899999999999999999999764 64 689999986
No 87
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=93.10 E-value=0.37 Score=46.71 Aligned_cols=103 Identities=18% Similarity=0.211 Sum_probs=64.0
Q ss_pred CCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCC-c-------cCCchhchhhhh---
Q 012398 325 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSR-K-------ESLQHFKKPWAH--- 393 (464)
Q Consensus 325 ~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r-~-------~~l~~~k~~fa~--- 393 (464)
.+|++.||+|+|+|+.|..+|+.|+.+ |+ .+|.++|.+=+ .... . +++-..|..-+.
T Consensus 17 ~~L~~~~VlivG~GglGs~va~~La~~-----Gv------g~i~lvD~D~v-e~sNL~Rq~l~~~~diG~~Ka~~~~~~l 84 (228)
T cd00757 17 EKLKNARVLVVGAGGLGSPAAEYLAAA-----GV------GKLGLVDDDVV-ELSNLQRQILHTEADVGQPKAEAAAERL 84 (228)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEcCCEE-cCcccccccccChhhCCChHHHHHHHHH
Confidence 478899999999999999999999764 64 68999998732 2211 0 011111211111
Q ss_pred -h-cCC---------C--CCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEc
Q 012398 394 -E-HAP---------I--KSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFAL 443 (464)
Q Consensus 394 -~-~~~---------~--~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaL 443 (464)
. .+. + .++.+.++. +|++|.+.... -+..++..++.....|+|++-
T Consensus 85 ~~~np~~~i~~~~~~i~~~~~~~~~~~--~DvVi~~~d~~--~~r~~l~~~~~~~~ip~i~~g 143 (228)
T cd00757 85 RAINPDVEIEAYNERLDAENAEELIAG--YDLVLDCTDNF--ATRYLINDACVKLGKPLVSGA 143 (228)
T ss_pred HHhCCCCEEEEecceeCHHHHHHHHhC--CCEEEEcCCCH--HHHHHHHHHHHHcCCCEEEEE
Confidence 1 011 1 134455554 88888775533 356667777777778888763
No 88
>PRK15076 alpha-galactosidase; Provisional
Probab=93.08 E-value=0.27 Score=52.57 Aligned_cols=106 Identities=17% Similarity=0.194 Sum_probs=63.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCch-hchhhhhhcCC-----CCCHHH
Q 012398 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQH-FKKPWAHEHAP-----IKSLLD 403 (464)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~-~k~~fa~~~~~-----~~~L~e 403 (464)
.||.|+|||+.|...+ ++..+....++ +...++|+|.+- +|.+.... .+...+..... .+++.+
T Consensus 2 ~KIaIIGaGsvg~~~~--~~~~i~~~~~l----~~~evvLvDid~----er~~~~~~l~~~~~~~~~~~~~i~~ttD~~e 71 (431)
T PRK15076 2 PKITFIGAGSTVFTKN--LLGDILSVPAL----RDAEIALMDIDP----ERLEESEIVARKLAESLGASAKITATTDRRE 71 (431)
T ss_pred cEEEEECCCHHHhHHH--HHHHHhhCccC----CCCEEEEECCCH----HHHHHHHHHHHHHHHhcCCCeEEEEECCHHH
Confidence 5899999999854443 32222211233 235799999752 22110000 01111111111 357899
Q ss_pred HHhcCCCcEEEeccCCCCC-------------------------------------CCHHHHHHHHcCCCCcEEEEcCCC
Q 012398 404 AVKAIKPTMLMGTSGVGKT-------------------------------------FTKEVVEAMASFNEKPVIFALSNP 446 (464)
Q Consensus 404 ~v~~vkptvLIG~S~~~g~-------------------------------------ft~evv~~Ma~~~erPIIFaLSNP 446 (464)
++++ +|++|=..+++|. .=.|+++.|.++++..+|+-.|||
T Consensus 72 al~d--ADfVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP 149 (431)
T PRK15076 72 ALQG--ADYVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNP 149 (431)
T ss_pred HhCC--CCEEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCCh
Confidence 9987 8988755544421 125788889999999999999999
Q ss_pred C
Q 012398 447 T 447 (464)
Q Consensus 447 t 447 (464)
.
T Consensus 150 ~ 150 (431)
T PRK15076 150 M 150 (431)
T ss_pred H
Confidence 8
No 89
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=93.05 E-value=0.31 Score=51.17 Aligned_cols=103 Identities=20% Similarity=0.272 Sum_probs=66.6
Q ss_pred CCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCc-------cCCchhchhhhhh---
Q 012398 325 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRK-------ESLQHFKKPWAHE--- 394 (464)
Q Consensus 325 ~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~-------~~l~~~k~~fa~~--- 394 (464)
++|++.||+|+|+|..|..+|+.|+.+ |+ .+|.++|.+=+=..+-. +++-..|..-+..
T Consensus 37 ~~l~~~~VliiG~GglG~~v~~~La~~-----Gv------g~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~ 105 (370)
T PRK05600 37 ERLHNARVLVIGAGGLGCPAMQSLASA-----GV------GTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLK 105 (370)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHH
Confidence 678999999999999999999999764 64 68999998733111100 1111122222111
Q ss_pred --cCC---------C--CCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEE
Q 012398 395 --HAP---------I--KSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFA 442 (464)
Q Consensus 395 --~~~---------~--~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFa 442 (464)
.+. + .++.+.+++ .|++|.++.- .=+.-+|..++.....|.|++
T Consensus 106 ~~np~v~i~~~~~~i~~~~~~~~~~~--~DlVid~~Dn--~~~r~~in~~~~~~~iP~v~~ 162 (370)
T PRK05600 106 EIQPDIRVNALRERLTAENAVELLNG--VDLVLDGSDS--FATKFLVADAAEITGTPLVWG 162 (370)
T ss_pred HHCCCCeeEEeeeecCHHHHHHHHhC--CCEEEECCCC--HHHHHHHHHHHHHcCCCEEEE
Confidence 111 1 245667776 8999987763 235667788887778998865
No 90
>PRK05442 malate dehydrogenase; Provisional
Probab=92.95 E-value=0.36 Score=49.85 Aligned_cols=108 Identities=13% Similarity=0.071 Sum_probs=66.6
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHHhcCCCh-hhhcCeEEEEcccCc---ccCCCccCCchhchhhhhhcCCCCCHHHHH
Q 012398 331 TFLFLGA-GEAGTGIAELIALEMSKQTKAPI-EEARKKIWLVDSKGL---IVSSRKESLQHFKKPWAHEHAPIKSLLDAV 405 (464)
Q Consensus 331 riv~~GA-GsAg~GiA~ll~~a~~~~~G~s~-~eA~~~i~lvD~~GL---l~~~r~~~l~~~k~~fa~~~~~~~~L~e~v 405 (464)
||.|+|| |..|..+|-.|+.. |+-. .+ ...|.|+|.+.- +..... +|.+...++-....-..+..+.+
T Consensus 6 KV~IiGaaG~VG~~~a~~l~~~-----~~~~~~~-~~el~LiDi~~~~~~~~g~a~-Dl~~~~~~~~~~~~i~~~~y~~~ 78 (326)
T PRK05442 6 RVAVTGAAGQIGYSLLFRIASG-----DMLGKDQ-PVILQLLEIPPALKALEGVVM-ELDDCAFPLLAGVVITDDPNVAF 78 (326)
T ss_pred EEEEECCCcHHHHHHHHHHHhh-----hhcCCCC-ccEEEEEecCCcccccceeeh-hhhhhhhhhcCCcEEecChHHHh
Confidence 8999998 99999998877653 3310 01 137999998532 111111 24333323322111113566778
Q ss_pred hcCCCcEEEeccCC---CC-----------CCCHHHHHHHHcCC-CCcEEEEcCCCC
Q 012398 406 KAIKPTMLMGTSGV---GK-----------TFTKEVVEAMASFN-EKPVIFALSNPT 447 (464)
Q Consensus 406 ~~vkptvLIG~S~~---~g-----------~ft~evv~~Ma~~~-erPIIFaLSNPt 447 (464)
++ +|++|=+.+. +| .+=+++++.+++++ ...||+-.|||.
T Consensus 79 ~d--aDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPv 133 (326)
T PRK05442 79 KD--ADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPA 133 (326)
T ss_pred CC--CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCch
Confidence 87 9988844443 33 12356777888867 699999999997
No 91
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=92.90 E-value=0.27 Score=49.83 Aligned_cols=50 Identities=32% Similarity=0.405 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhCCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 313 LAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 313 LAgll~Alk~~g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
..|++.+++-.+..+++.+++++|||-|+.+|+-.+.. .|+ ++|+++++.
T Consensus 108 ~~Gf~~~l~~~~~~~~~k~vlvlGaGGaarAi~~~l~~-----~g~------~~i~i~nRt 157 (288)
T PRK12749 108 GTGHIRAIKESGFDIKGKTMVLLGAGGASTAIGAQGAI-----EGL------KEIKLFNRR 157 (288)
T ss_pred HHHHHHHHHhcCCCcCCCEEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 35678888888888999999999999999888776654 354 589999984
No 92
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=92.90 E-value=0.52 Score=48.27 Aligned_cols=115 Identities=13% Similarity=0.146 Sum_probs=68.1
Q ss_pred HHHHHHHHhCCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhhh
Q 012398 315 GILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE 394 (464)
Q Consensus 315 gll~Alk~~g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~ 394 (464)
|.+++.....+ ...+++|+|+|..|..++..+... .++ ++|+++++. ..| .......+.+.
T Consensus 117 ~~laa~~la~~--~~~~v~iiGaG~qA~~~~~al~~~----~~i------~~v~V~~R~----~~~---a~~~a~~~~~~ 177 (326)
T TIGR02992 117 GAVAARHLARE--DSSVVAIFGAGMQARLQLEALTLV----RDI------RSARIWARD----SAK---AEALALQLSSL 177 (326)
T ss_pred HHHHHHHhCCC--CCcEEEEECCCHHHHHHHHHHHHh----CCc------cEEEEECCC----HHH---HHHHHHHHHhh
Confidence 44444444322 346899999999999998877543 233 578888773 222 12222222111
Q ss_pred ----cCCCCCHHHHHhcCCCcEEEeccCC-CCCCCHHHHHHHHcCCCCcEEEEcCCCC-CCCCCCHHH
Q 012398 395 ----HAPIKSLLDAVKAIKPTMLMGTSGV-GKTFTKEVVEAMASFNEKPVIFALSNPT-SQSECTAEE 456 (464)
Q Consensus 395 ----~~~~~~L~e~v~~vkptvLIG~S~~-~g~ft~evv~~Ma~~~erPIIFaLSNPt-~~~E~tped 456 (464)
.....+++++++. .|++|-++.. ...|+.++++. .-.|.++...+ .+-|+.|+-
T Consensus 178 ~g~~v~~~~~~~~av~~--aDiVvtaT~s~~p~i~~~~l~~------g~~i~~vg~~~p~~rEld~~~ 237 (326)
T TIGR02992 178 LGIDVTAATDPRAAMSG--ADIIVTTTPSETPILHAEWLEP------GQHVTAMGSDAEHKNEIDPAV 237 (326)
T ss_pred cCceEEEeCCHHHHhcc--CCEEEEecCCCCcEecHHHcCC------CcEEEeeCCCCCCceecCHHH
Confidence 1113689999986 9999977643 24788888763 22455554322 246777654
No 93
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=92.88 E-value=0.39 Score=44.75 Aligned_cols=108 Identities=16% Similarity=0.136 Sum_probs=68.2
Q ss_pred HHHHhCCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhhhcCCC
Q 012398 319 ALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPI 398 (464)
Q Consensus 319 Alk~~g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~~~~~ 398 (464)
.....+..|.+++|.|+|.|..|..+|+++... |+ +++.+|+..-- . + .+....-..
T Consensus 26 ~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~f-----G~-------~V~~~d~~~~~-----~---~---~~~~~~~~~ 82 (178)
T PF02826_consen 26 RERFPGRELRGKTVGIIGYGRIGRAVARRLKAF-----GM-------RVIGYDRSPKP-----E---E---GADEFGVEY 82 (178)
T ss_dssp HTTTTBS-STTSEEEEESTSHHHHHHHHHHHHT-----T--------EEEEEESSCHH-----H---H---HHHHTTEEE
T ss_pred CcCCCccccCCCEEEEEEEcCCcCeEeeeeecC-----Cc-------eeEEecccCCh-----h---h---hccccccee
Confidence 345667889999999999999999999999743 54 68888885220 0 0 111111123
Q ss_pred CCHHHHHhcCCCcEEEecc----CCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHh
Q 012398 399 KSLLDAVKAIKPTMLMGTS----GVGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAY 458 (464)
Q Consensus 399 ~~L~e~v~~vkptvLIG~S----~~~g~ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpedA~ 458 (464)
.+|.|+++. .|+++=.- ..-+.|+++.++.|. +..++.-.| +.++--|+|+
T Consensus 83 ~~l~ell~~--aDiv~~~~plt~~T~~li~~~~l~~mk---~ga~lvN~a----RG~~vde~aL 137 (178)
T PF02826_consen 83 VSLDELLAQ--ADIVSLHLPLTPETRGLINAEFLAKMK---PGAVLVNVA----RGELVDEDAL 137 (178)
T ss_dssp SSHHHHHHH---SEEEE-SSSSTTTTTSBSHHHHHTST---TTEEEEESS----SGGGB-HHHH
T ss_pred eehhhhcch--hhhhhhhhccccccceeeeeeeeeccc---cceEEEecc----chhhhhhhHH
Confidence 579998887 88887432 113689999999995 455666444 3445444443
No 94
>PRK08605 D-lactate dehydrogenase; Validated
Probab=92.87 E-value=0.53 Score=48.45 Aligned_cols=93 Identities=12% Similarity=0.188 Sum_probs=59.6
Q ss_pred CCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhhhcCCCCCHHH
Q 012398 324 GGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLD 403 (464)
Q Consensus 324 g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~L~e 403 (464)
+..|.+++|.|+|.|..|..+|+.+..+ .|+ ++|..|+.. . ... ..++ ....+|.|
T Consensus 141 ~~~l~g~~VgIIG~G~IG~~vA~~L~~~----~g~-------~V~~~d~~~----~--~~~----~~~~---~~~~~l~e 196 (332)
T PRK08605 141 SRSIKDLKVAVIGTGRIGLAVAKIFAKG----YGS-------DVVAYDPFP----N--AKA----ATYV---DYKDTIEE 196 (332)
T ss_pred cceeCCCEEEEECCCHHHHHHHHHHHhc----CCC-------EEEEECCCc----c--HhH----Hhhc---cccCCHHH
Confidence 5678999999999999999999998533 243 688888642 1 001 1111 12347888
Q ss_pred HHhcCCCcEEEeccC----CCCCCCHHHHHHHHcCCCCcEEEEcCC
Q 012398 404 AVKAIKPTMLMGTSG----VGKTFTKEVVEAMASFNEKPVIFALSN 445 (464)
Q Consensus 404 ~v~~vkptvLIG~S~----~~g~ft~evv~~Ma~~~erPIIFaLSN 445 (464)
+++. .|+++=..- ..+.|+++.++.|. +..++.=+|.
T Consensus 197 ll~~--aDvIvl~lP~t~~t~~li~~~~l~~mk---~gailIN~sR 237 (332)
T PRK08605 197 AVEG--ADIVTLHMPATKYNHYLFNADLFKHFK---KGAVFVNCAR 237 (332)
T ss_pred HHHh--CCEEEEeCCCCcchhhhcCHHHHhcCC---CCcEEEECCC
Confidence 8876 788774321 12466677777774 4566665554
No 95
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.85 E-value=0.2 Score=49.94 Aligned_cols=32 Identities=25% Similarity=0.260 Sum_probs=26.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
.||.|+|+|..|.+||..+..+ | .+++++|.+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~-----G-------~~V~l~d~~ 35 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFH-----G-------FDVTIYDIS 35 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhc-----C-------CeEEEEeCC
Confidence 5899999999999999888642 4 368888864
No 96
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=92.59 E-value=0.28 Score=47.09 Aligned_cols=38 Identities=29% Similarity=0.326 Sum_probs=33.1
Q ss_pred CCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 325 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 325 ~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
.+|++.||+|+|+|..|..||..|..+ |+ +++.++|.+
T Consensus 17 ~~L~~~~V~IvG~GglGs~ia~~La~~-----Gv------g~i~lvD~D 54 (200)
T TIGR02354 17 QKLEQATVAICGLGGLGSNVAINLARA-----GI------GKLILVDFD 54 (200)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHc-----CC------CEEEEECCC
Confidence 468899999999999999999999764 64 579999987
No 97
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=92.52 E-value=0.41 Score=47.22 Aligned_cols=104 Identities=13% Similarity=0.179 Sum_probs=65.8
Q ss_pred CCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCc-------cCCchhchhhhh----
Q 012398 325 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRK-------ESLQHFKKPWAH---- 393 (464)
Q Consensus 325 ~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~-------~~l~~~k~~fa~---- 393 (464)
++|++.||+|+|+|..|..+|+.|+.+ |+ ++|.++|.+=+=..+-. +++-..|..-+.
T Consensus 20 ~~L~~~~VlvvG~GglGs~va~~La~~-----Gv------g~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~ 88 (240)
T TIGR02355 20 EALKASRVLIVGLGGLGCAASQYLAAA-----GV------GNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALT 88 (240)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHc-----CC------CEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHH
Confidence 478899999999999999999999764 64 68999998733221110 011111111111
Q ss_pred h-cC---------CC--CCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEc
Q 012398 394 E-HA---------PI--KSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFAL 443 (464)
Q Consensus 394 ~-~~---------~~--~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaL 443 (464)
. .+ .+ .++.+.++. .|++|-++... -+..++-.++.....|+|++-
T Consensus 89 ~inp~v~i~~~~~~i~~~~~~~~~~~--~DlVvd~~D~~--~~r~~ln~~~~~~~ip~v~~~ 146 (240)
T TIGR02355 89 QINPHIAINPINAKLDDAELAALIAE--HDIVVDCTDNV--EVRNQLNRQCFAAKVPLVSGA 146 (240)
T ss_pred HHCCCcEEEEEeccCCHHHHHHHhhc--CCEEEEcCCCH--HHHHHHHHHHHHcCCCEEEEE
Confidence 0 01 11 135556665 88998776543 467778888877889988763
No 98
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.50 E-value=0.49 Score=48.38 Aligned_cols=93 Identities=22% Similarity=0.303 Sum_probs=73.1
Q ss_pred hhHHHHHHHHHHHHHhCCCCCcceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCch
Q 012398 308 TASVVLAGILSALKLVGGTLADQTFLFLGAG-EAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQH 386 (464)
Q Consensus 308 TaaV~LAgll~Alk~~g~~l~d~riv~~GAG-sAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~ 386 (464)
-.-+|-.|++.-|+-.|.+++..++|++|.+ ..|.-+|.||.. .| ..+.+|+++
T Consensus 137 ~~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~-----~~-------atVt~chs~------------- 191 (284)
T PRK14190 137 FLPCTPHGILELLKEYNIDISGKHVVVVGRSNIVGKPVGQLLLN-----EN-------ATVTYCHSK------------- 191 (284)
T ss_pred CCCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHH-----CC-------CEEEEEeCC-------------
Confidence 3467888899999999999999999999985 578888888864 23 246666541
Q ss_pred hchhhhhhcCCCCCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 012398 387 FKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALS 444 (464)
Q Consensus 387 ~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaLS 444 (464)
..+|.+.+++ +|++|...+.++.|++++|+ +..+|+=..
T Consensus 192 -----------t~~l~~~~~~--ADIvI~AvG~p~~i~~~~ik------~gavVIDvG 230 (284)
T PRK14190 192 -----------TKNLAELTKQ--ADILIVAVGKPKLITADMVK------EGAVVIDVG 230 (284)
T ss_pred -----------chhHHHHHHh--CCEEEEecCCCCcCCHHHcC------CCCEEEEee
Confidence 1368888997 99999999999999999996 566776543
No 99
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=92.50 E-value=0.23 Score=47.66 Aligned_cols=109 Identities=17% Similarity=0.290 Sum_probs=68.5
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhhhc-CC-----CCCHHHH
Q 012398 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEH-AP-----IKSLLDA 404 (464)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~~-~~-----~~~L~e~ 404 (464)
||+|+||||+-.. .++...+.+...++ ...|+|+|.+ .+|-+.....-+.+++.. .+ ..++.||
T Consensus 1 KI~iIGaGS~~~~--~~l~~~l~~~~~l~----~~ei~L~Did----~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eA 70 (183)
T PF02056_consen 1 KITIIGAGSTYFP--LLLLGDLLRTEELS----GSEIVLMDID----EERLEIVERLARRMVEEAGADLKVEATTDRREA 70 (183)
T ss_dssp EEEEETTTSCCHH--HHHHHHHHCTTTST----EEEEEEE-SC----HHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHH
T ss_pred CEEEECCchHhhH--HHHHHHHhcCccCC----CcEEEEEcCC----HHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHH
Confidence 7999999998543 34444444434443 4689999985 233221222333344332 12 2589999
Q ss_pred HhcCCCcEEE---------------------eccC-------CCCCC--------CHHHHHHHHcCCCCcEEEEcCCCCC
Q 012398 405 VKAIKPTMLM---------------------GTSG-------VGKTF--------TKEVVEAMASFNEKPVIFALSNPTS 448 (464)
Q Consensus 405 v~~vkptvLI---------------------G~S~-------~~g~f--------t~evv~~Ma~~~erPIIFaLSNPt~ 448 (464)
+++ +|.+| |+-+ ++|.| =.|+.+.|.+.|++.-||=.+||.
T Consensus 71 l~g--ADfVi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~~~PdAw~iNytNP~- 147 (183)
T PF02056_consen 71 LEG--ADFVINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEELCPDAWLINYTNPM- 147 (183)
T ss_dssp HTT--ESEEEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHHHTTTSEEEE-SSSH-
T ss_pred hCC--CCEEEEEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHHhCCCcEEEeccChH-
Confidence 998 99998 3322 22333 258899999999999999999998
Q ss_pred CCCCC
Q 012398 449 QSECT 453 (464)
Q Consensus 449 ~~E~t 453 (464)
++++
T Consensus 148 -~~vt 151 (183)
T PF02056_consen 148 -GIVT 151 (183)
T ss_dssp -HHHH
T ss_pred -HHHH
Confidence 5544
No 100
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=92.46 E-value=1.3 Score=47.04 Aligned_cols=54 Identities=22% Similarity=0.301 Sum_probs=45.5
Q ss_pred chhHHHHHHHHHHHHHhCCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcc
Q 012398 307 GTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDS 372 (464)
Q Consensus 307 GTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~ 372 (464)
..|=-+++.+++..|-.|..|++.+|.|+|.|..|..+|+.+.. .|+ ++..+|.
T Consensus 94 aVAE~~~~~lL~l~r~~g~~L~gktvGIIG~G~IG~~vA~~l~a-----~G~-------~V~~~dp 147 (378)
T PRK15438 94 AVVEYVFSSLLMLAERDGFSLHDRTVGIVGVGNVGRRLQARLEA-----LGI-------KTLLCDP 147 (378)
T ss_pred HHHHHHHHHHHHHhccCCCCcCCCEEEEECcCHHHHHHHHHHHH-----CCC-------EEEEECC
Confidence 45556788899888888999999999999999999999999864 365 5778885
No 101
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.45 E-value=0.42 Score=48.94 Aligned_cols=97 Identities=15% Similarity=0.253 Sum_probs=72.4
Q ss_pred hhHHHHHHHHHHHHHhCCCCCcceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCch
Q 012398 308 TASVVLAGILSALKLVGGTLADQTFLFLGAG-EAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQH 386 (464)
Q Consensus 308 TaaV~LAgll~Alk~~g~~l~d~riv~~GAG-sAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~ 386 (464)
-.-+|-+|++.=|+-.+.+++.+++||+|.+ ..|.-+|.||... |. .+ ...+..++++.
T Consensus 136 ~~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~-----~~-~~--~AtVt~~hs~t------------ 195 (286)
T PRK14184 136 FRPCTPAGVMTLLERYGLSPAGKKAVVVGRSNIVGKPLALMLGAP-----GK-FA--NATVTVCHSRT------------ 195 (286)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhCC-----cc-cC--CCEEEEEeCCc------------
Confidence 3567888999999999999999999999986 5677888877541 10 00 12455565431
Q ss_pred hchhhhhhcCCCCCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 012398 387 FKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALS 444 (464)
Q Consensus 387 ~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaLS 444 (464)
.+|.+.++. +|++|+..+.++.|++++|+ +..+|.-.+
T Consensus 196 ------------~~l~~~~~~--ADIVI~AvG~p~li~~~~vk------~GavVIDVG 233 (286)
T PRK14184 196 ------------PDLAEECRE--ADFLFVAIGRPRFVTADMVK------PGAVVVDVG 233 (286)
T ss_pred ------------hhHHHHHHh--CCEEEEecCCCCcCCHHHcC------CCCEEEEee
Confidence 358899997 99999999999999999994 556765444
No 102
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.39 E-value=0.78 Score=47.29 Aligned_cols=111 Identities=14% Similarity=0.069 Sum_probs=67.6
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcc--cCCCccCCchhchhhhhhcCCCCCHHHHHh
Q 012398 330 QTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLI--VSSRKESLQHFKKPWAHEHAPIKSLLDAVK 406 (464)
Q Consensus 330 ~riv~~GA-GsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl--~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~ 406 (464)
.||.|+|| |..|..+|-.|+. .|+-.-.-...+.|+|.+.-. ..+..-+|.+..-+|.....-..+..+.++
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~-----~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~ 77 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIAS-----GEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFK 77 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHh-----ccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhC
Confidence 38999999 9999999887764 244100011379999985432 111111233332233221111135567788
Q ss_pred cCCCcEEEeccCC---CCC-----------CCHHHHHHHHcCC-CCcEEEEcCCCC
Q 012398 407 AIKPTMLMGTSGV---GKT-----------FTKEVVEAMASFN-EKPVIFALSNPT 447 (464)
Q Consensus 407 ~vkptvLIG~S~~---~g~-----------ft~evv~~Ma~~~-erPIIFaLSNPt 447 (464)
+ .|++|=+.+. +|- +=+++.+.+.+++ +.-||+-.|||.
T Consensus 78 d--aDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv 131 (322)
T cd01338 78 D--ADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPC 131 (322)
T ss_pred C--CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcH
Confidence 7 9999955444 331 1256778888899 499999999997
No 103
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=92.38 E-value=0.85 Score=46.94 Aligned_cols=102 Identities=25% Similarity=0.353 Sum_probs=67.3
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhhhc--CCCCCHHHHHhc
Q 012398 331 TFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEH--APIKSLLDAVKA 407 (464)
Q Consensus 331 riv~~GA-GsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~~--~~~~~L~e~v~~ 407 (464)
||.|+|| |..|..+|-+|+. .|+ ...+.|+|.+. ..+-.-+|.+... ..+-. ....++.+++++
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~-----~~~-----~~elvL~Di~~--a~g~a~DL~~~~~-~~~i~~~~~~~~~~~~~~d 67 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKL-----QPY-----VSELSLYDIAG--AAGVAADLSHIPT-AASVKGFSGEEGLENALKG 67 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHh-----CCC-----CcEEEEecCCC--CcEEEchhhcCCc-CceEEEecCCCchHHHcCC
Confidence 6899999 9999999998754 254 25799999876 2221112433221 01100 011246788988
Q ss_pred CCCcEEEeccCCC---C-----------CCCHHHHHHHHcCCCCcEEEEcCCCC
Q 012398 408 IKPTMLMGTSGVG---K-----------TFTKEVVEAMASFNEKPVIFALSNPT 447 (464)
Q Consensus 408 vkptvLIG~S~~~---g-----------~ft~evv~~Ma~~~erPIIFaLSNPt 447 (464)
+|++|=+.+.+ | -.=+++.+.+.+++...||+-.|||.
T Consensus 68 --aDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNPv 119 (312)
T TIGR01772 68 --ADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPV 119 (312)
T ss_pred --CCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCch
Confidence 99888555443 2 12356778888999999999999998
No 104
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.27 E-value=0.56 Score=47.92 Aligned_cols=93 Identities=17% Similarity=0.252 Sum_probs=72.5
Q ss_pred chhHHHHHHHHHHHHHhCCCCCcceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCc
Q 012398 307 GTASVVLAGILSALKLVGGTLADQTFLFLGAG-EAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQ 385 (464)
Q Consensus 307 GTaaV~LAgll~Alk~~g~~l~d~riv~~GAG-sAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~ 385 (464)
+-.-+|.+|++.=|+-.+.+++.+++||+|-+ ..|.-+|.||.. .|. .+.+|+++ .
T Consensus 135 ~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~-----~~A-------tVti~hs~-------T---- 191 (281)
T PRK14183 135 GFVPCTPLGVMELLEEYEIDVKGKDVCVVGASNIVGKPMAALLLN-----ANA-------TVDICHIF-------T---- 191 (281)
T ss_pred CCCCCcHHHHHHHHHHcCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC-------C----
Confidence 34567888899999999999999999999998 889999998864 242 34455442 1
Q ss_pred hhchhhhhhcCCCCCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEc
Q 012398 386 HFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFAL 443 (464)
Q Consensus 386 ~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaL 443 (464)
.+|.+.++. +|++|-..+.++.|++|||+ +..+|.=.
T Consensus 192 -------------~~l~~~~~~--ADIvV~AvGkp~~i~~~~vk------~gavvIDv 228 (281)
T PRK14183 192 -------------KDLKAHTKK--ADIVIVGVGKPNLITEDMVK------EGAIVIDI 228 (281)
T ss_pred -------------cCHHHHHhh--CCEEEEecCcccccCHHHcC------CCcEEEEe
Confidence 236778887 99999999999999999998 45566543
No 105
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=92.20 E-value=1.1 Score=46.35 Aligned_cols=100 Identities=22% Similarity=0.224 Sum_probs=66.5
Q ss_pred hhHHHHHHHHHHHH------------------HhCCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEE
Q 012398 308 TASVVLAGILSALK------------------LVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWL 369 (464)
Q Consensus 308 TaaV~LAgll~Alk------------------~~g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~l 369 (464)
.|=-++|.+|+..| ..|..|.++++.|+|.|..|..+|+.+... |+ ++..
T Consensus 103 vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~g~el~gkTvGIiG~G~IG~~va~~l~af-----gm-------~v~~ 170 (324)
T COG0111 103 VAELVLALLLALARRIPDADASQRRGEWDRKAFRGTELAGKTVGIIGLGRIGRAVAKRLKAF-----GM-------KVIG 170 (324)
T ss_pred HHHHHHHHHHHHhcCchhhHHHHHcCCccccccccccccCCEEEEECCCHHHHHHHHHHHhC-----CC-------eEEE
Confidence 34456777788777 567789999999999999999999998653 65 5777
Q ss_pred EcccCcccCCCccCCchhchhhhhhcCCCCCHHHHHhcCCCcEEEecc----CCCCCCCHHHHHHHH
Q 012398 370 VDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTS----GVGKTFTKEVVEAMA 432 (464)
Q Consensus 370 vD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S----~~~g~ft~evv~~Ma 432 (464)
+|+. ..+. ... ........+|.+.++. .|+++-.- ..-|.++++-+..|.
T Consensus 171 ~d~~----~~~~--~~~-----~~~~~~~~~Ld~lL~~--sDiv~lh~PlT~eT~g~i~~~~~a~MK 224 (324)
T COG0111 171 YDPY----SPRE--RAG-----VDGVVGVDSLDELLAE--ADILTLHLPLTPETRGLINAEELAKMK 224 (324)
T ss_pred ECCC----Cchh--hhc-----cccceecccHHHHHhh--CCEEEEcCCCCcchhcccCHHHHhhCC
Confidence 8873 1110 000 0011223568888876 78777432 112577888888883
No 106
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=92.20 E-value=0.43 Score=50.72 Aligned_cols=104 Identities=17% Similarity=0.235 Sum_probs=62.1
Q ss_pred ceEEEeCcchHHHHHHH--HHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhhhc-C-----CCCCH
Q 012398 330 QTFLFLGAGEAGTGIAE--LIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEH-A-----PIKSL 401 (464)
Q Consensus 330 ~riv~~GAGsAg~GiA~--ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~~-~-----~~~~L 401 (464)
.||.|+|||+.|.+.+- .|+.. .. .+..+++++|.+- ++.+.+...-+.++... . ...++
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~----~~----~~g~eV~L~Did~----e~l~~~~~~~~~~~~~~~~~~~I~~ttD~ 68 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKT----PE----LSGSTIALMDIDE----ERLETVEILAKKIVEELGAPLKIEATTDR 68 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcC----CC----CCCCEEEEECCCH----HHHHHHHHHHHHHHHhcCCCeEEEEeCCH
Confidence 37999999999888663 22210 11 1235799999752 22111111111222111 1 13589
Q ss_pred HHHHhcCCCcEEEeccCCC---------------CCC---------------------CHHHHHHHHcCCCCcEEEEcCC
Q 012398 402 LDAVKAIKPTMLMGTSGVG---------------KTF---------------------TKEVVEAMASFNEKPVIFALSN 445 (464)
Q Consensus 402 ~e~v~~vkptvLIG~S~~~---------------g~f---------------------t~evv~~Ma~~~erPIIFaLSN 445 (464)
.+++++ +|++|=.-..+ |+| -.++.+.|.+++++.+++=.||
T Consensus 69 ~eal~~--AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p~a~~i~~tN 146 (423)
T cd05297 69 REALDG--ADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYAN 146 (423)
T ss_pred HHHhcC--CCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCCCCEEEEcCC
Confidence 999997 89887443321 111 2277888888889999999999
Q ss_pred CC
Q 012398 446 PT 447 (464)
Q Consensus 446 Pt 447 (464)
|.
T Consensus 147 Pv 148 (423)
T cd05297 147 PM 148 (423)
T ss_pred hH
Confidence 98
No 107
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=92.15 E-value=0.63 Score=43.71 Aligned_cols=85 Identities=16% Similarity=0.271 Sum_probs=58.7
Q ss_pred hhHHHHHHHHHHHHHhCCCCCcceEEEeCcch-HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCch
Q 012398 308 TASVVLAGILSALKLVGGTLADQTFLFLGAGE-AGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQH 386 (464)
Q Consensus 308 TaaV~LAgll~Alk~~g~~l~d~riv~~GAGs-Ag~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~ 386 (464)
---+|-.|++.-|+-.+.+++..+++++|.+. .|.-+|.||.. .|. .+.+++++-
T Consensus 15 ~~PcTp~aii~lL~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~-----~~a-------tVt~~h~~T------------ 70 (160)
T PF02882_consen 15 FVPCTPLAIIELLEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLN-----KGA-------TVTICHSKT------------ 70 (160)
T ss_dssp S--HHHHHHHHHHHHTT-STTT-EEEEE-TTTTTHHHHHHHHHH-----TT--------EEEEE-TTS------------
T ss_pred CcCCCHHHHHHHHHhcCCCCCCCEEEEECCcCCCChHHHHHHHh-----CCC-------eEEeccCCC------------
Confidence 34568888999999999999999999999984 88888888865 232 244555431
Q ss_pred hchhhhhhcCCCCCHHHHHhcCCCcEEEeccCCCCCCCHHHHHH
Q 012398 387 FKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEA 430 (464)
Q Consensus 387 ~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~ 430 (464)
.+|.+.++. +|++|-..+.++.++.++|+.
T Consensus 71 ------------~~l~~~~~~--ADIVVsa~G~~~~i~~~~ik~ 100 (160)
T PF02882_consen 71 ------------KNLQEITRR--ADIVVSAVGKPNLIKADWIKP 100 (160)
T ss_dssp ------------SSHHHHHTT--SSEEEE-SSSTT-B-GGGS-T
T ss_pred ------------Ccccceeee--ccEEeeeeccccccccccccC
Confidence 357777876 999999999999999999973
No 108
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=92.14 E-value=0.31 Score=49.33 Aligned_cols=49 Identities=16% Similarity=0.200 Sum_probs=38.6
Q ss_pred HHHHHHHHHhCCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 314 AGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 314 Agll~Alk~~g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
.|++.+|+-.+..+++.+++++|||-|+-+|+-.|.+ .|. ++|+++|+.
T Consensus 112 ~Gf~~~L~~~~~~~~~k~vlilGaGGaarAi~~aL~~-----~g~------~~i~i~nR~ 160 (283)
T PRK14027 112 SGFGRGMEEGLPNAKLDSVVQVGAGGVGNAVAYALVT-----HGV------QKLQVADLD 160 (283)
T ss_pred HHHHHHHHhcCcCcCCCeEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEcCC
Confidence 4677777754556888999999999999999887764 354 589999884
No 109
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.08 E-value=0.67 Score=47.45 Aligned_cols=90 Identities=20% Similarity=0.299 Sum_probs=69.5
Q ss_pred hHHHHHHHHHHHHHhCCCCCcceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchh
Q 012398 309 ASVVLAGILSALKLVGGTLADQTFLFLGAG-EAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHF 387 (464)
Q Consensus 309 aaV~LAgll~Alk~~g~~l~d~riv~~GAG-sAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~ 387 (464)
.-+|-.|++.=++-.+.+++.+++||+|.+ ..|.-+|.||.. .|. .+.+|+|+
T Consensus 139 ~PcTp~avi~ll~~y~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~a-------tVt~chs~-------------- 192 (284)
T PRK14177 139 LPCTPYGMVLLLKEYGIDVTGKNAVVVGRSPILGKPMAMLLTE-----MNA-------TVTLCHSK-------------- 192 (284)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC--------------
Confidence 345677888888889999999999999975 578888888864 242 46666653
Q ss_pred chhhhhhcCCCCCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEE
Q 012398 388 KKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFA 442 (464)
Q Consensus 388 k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFa 442 (464)
..+|.+.+++ +|++|...+.++.++.|+|+ +..+|+=
T Consensus 193 ----------T~~l~~~~~~--ADIvIsAvGk~~~i~~~~ik------~gavVID 229 (284)
T PRK14177 193 ----------TQNLPSIVRQ--ADIIVGAVGKPEFIKADWIS------EGAVLLD 229 (284)
T ss_pred ----------CCCHHHHHhh--CCEEEEeCCCcCccCHHHcC------CCCEEEE
Confidence 1357788887 99999999999999999998 4556553
No 110
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=91.95 E-value=0.95 Score=46.78 Aligned_cols=122 Identities=16% Similarity=0.098 Sum_probs=72.3
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcc--cCCCccCCchhchhhhhhcCCCCCHHHHHh
Q 012398 330 QTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLI--VSSRKESLQHFKKPWAHEHAPIKSLLDAVK 406 (464)
Q Consensus 330 ~riv~~GA-GsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl--~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~ 406 (464)
-||.|+|| |..|..+|-.|+. .|+-.-.=...|.|+|.+.-. .++..-+|.+..-++.....-..+..+.++
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~-----~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~ 78 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIAS-----GELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFK 78 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHh-----CCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhC
Confidence 48999998 9999999998864 254100001279999986311 111111233322122221111145667788
Q ss_pred cCCCcEEEeccCCC---CC-----------CCHHHHHHHHcCCC-CcEEEEcCCCCCCCCCCHHHHhccc
Q 012398 407 AIKPTMLMGTSGVG---KT-----------FTKEVVEAMASFNE-KPVIFALSNPTSQSECTAEEAYTWS 461 (464)
Q Consensus 407 ~vkptvLIG~S~~~---g~-----------ft~evv~~Ma~~~e-rPIIFaLSNPt~~~E~tpedA~~wT 461 (464)
+ .|++|=+.+.+ |- +=+++++.+++++. ..||+--|||. .+..--+++++
T Consensus 79 d--aDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPv---Dv~t~v~~k~s 143 (323)
T TIGR01759 79 D--VDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPA---NTNALIASKNA 143 (323)
T ss_pred C--CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcH---HHHHHHHHHHc
Confidence 7 99998544443 31 23567888889997 99999999997 34444444443
No 111
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.94 E-value=0.46 Score=48.62 Aligned_cols=102 Identities=17% Similarity=0.287 Sum_probs=65.7
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhh--hcC-CCCCHHHHHhc
Q 012398 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAH--EHA-PIKSLLDAVKA 407 (464)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~--~~~-~~~~L~e~v~~ 407 (464)
||.|+|||..|..+|-.|+. .|+ .+.+.|+|.+-=..++..-+|.+. ..|.. ... ..++ .+.+++
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~-----~~~-----~~elvL~Di~~~~a~g~a~DL~~~-~~~~~~~~~~i~~~~-y~~~~~ 68 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALA-----LGL-----FSEIVLIDVNEGVAEGEALDFHHA-TALTYSTNTKIRAGD-YDDCAD 68 (307)
T ss_pred CEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCcchhhHHHHHHHhh-hccCCCCCEEEEECC-HHHhCC
Confidence 68999999999999998874 355 358999997411111111123221 12221 100 0134 466777
Q ss_pred CCCcEEEeccCC---CCCCC--------------HHHHHHHHcCCCCcEEEEcCCCC
Q 012398 408 IKPTMLMGTSGV---GKTFT--------------KEVVEAMASFNEKPVIFALSNPT 447 (464)
Q Consensus 408 vkptvLIG~S~~---~g~ft--------------~evv~~Ma~~~erPIIFaLSNPt 447 (464)
+|++|=+.+. +| -| +++++.+.+++...|++-.|||.
T Consensus 69 --aDivvitaG~~~kpg-~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNPv 122 (307)
T cd05290 69 --ADIIVITAGPSIDPG-NTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPL 122 (307)
T ss_pred --CCEEEECCCCCCCCC-CCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCcH
Confidence 9998855554 33 23 57888999999999999999997
No 112
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=91.86 E-value=0.51 Score=46.61 Aligned_cols=105 Identities=15% Similarity=0.191 Sum_probs=67.5
Q ss_pred CCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCc--------cCCchhchhhhh---
Q 012398 325 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRK--------ESLQHFKKPWAH--- 393 (464)
Q Consensus 325 ~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~--------~~l~~~k~~fa~--- 393 (464)
++|++.||+|+|+|..|.-+|+.|+.+ |+ ++|.++|.+ .|..+.- +++-..|..-++
T Consensus 28 ~~L~~~~VliiG~GglGs~va~~La~~-----Gv------g~i~lvD~D-~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l 95 (245)
T PRK05690 28 EKLKAARVLVVGLGGLGCAASQYLAAA-----GV------GTLTLVDFD-TVSLSNLQRQVLHDDATIGQPKVESARAAL 95 (245)
T ss_pred HHhcCCeEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEcCC-EECcchhhhhhcCChhhCCChHHHHHHHHH
Confidence 478999999999999999999999874 64 689999987 3332210 011112221111
Q ss_pred -h-cCC---------C--CCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC
Q 012398 394 -E-HAP---------I--KSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSN 445 (464)
Q Consensus 394 -~-~~~---------~--~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaLSN 445 (464)
. .+. + .++.+.++. .|++|.++... -+..++...+.....|+|.+-++
T Consensus 96 ~~lnp~v~i~~~~~~i~~~~~~~~~~~--~DiVi~~~D~~--~~r~~ln~~~~~~~ip~v~~~~~ 156 (245)
T PRK05690 96 ARINPHIAIETINARLDDDELAALIAG--HDLVLDCTDNV--ATRNQLNRACFAAKKPLVSGAAI 156 (245)
T ss_pred HHHCCCCEEEEEeccCCHHHHHHHHhc--CCEEEecCCCH--HHHHHHHHHHHHhCCEEEEeeec
Confidence 1 111 1 134556665 89999887633 35666777777778999986554
No 113
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.78 E-value=1.1 Score=45.87 Aligned_cols=91 Identities=19% Similarity=0.308 Sum_probs=72.3
Q ss_pred hHHHHHHHHHHHHHhCCCCCcceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchh
Q 012398 309 ASVVLAGILSALKLVGGTLADQTFLFLGAG-EAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHF 387 (464)
Q Consensus 309 aaV~LAgll~Alk~~g~~l~d~riv~~GAG-sAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~ 387 (464)
.-+|-+|++.=|+-.+.+++.++++|+|-+ ..|.-+|.||.. .|. .+.+|+|+
T Consensus 138 ~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~-----~~A-------tVt~chs~-------------- 191 (278)
T PRK14172 138 LPCTPNSVITLIKSLNIDIEGKEVVVIGRSNIVGKPVAQLLLN-----ENA-------TVTICHSK-------------- 191 (278)
T ss_pred cCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CCC-------EEEEeCCC--------------
Confidence 466888899999999999999999999975 578888888864 242 46666652
Q ss_pred chhhhhhcCCCCCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEc
Q 012398 388 KKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFAL 443 (464)
Q Consensus 388 k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaL 443 (464)
..+|.+.+++ +|++|-..+.++.|++|+|+ +..+|+=-
T Consensus 192 ----------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik------~gavVIDv 229 (278)
T PRK14172 192 ----------TKNLKEVCKK--ADILVVAIGRPKFIDEEYVK------EGAIVIDV 229 (278)
T ss_pred ----------CCCHHHHHhh--CCEEEEcCCCcCccCHHHcC------CCcEEEEe
Confidence 1357888887 99999999999999999998 56677644
No 114
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.58 E-value=0.68 Score=47.37 Aligned_cols=93 Identities=23% Similarity=0.358 Sum_probs=74.2
Q ss_pred hhHHHHHHHHHHHHHhCCCCCcceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCch
Q 012398 308 TASVVLAGILSALKLVGGTLADQTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQH 386 (464)
Q Consensus 308 TaaV~LAgll~Alk~~g~~l~d~riv~~GA-GsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~ 386 (464)
-.-+|-+|++.=|+-.|.+++..+++|+|. |..|.-+|.+|..+ |. .+.++.++ .
T Consensus 137 ~~PcTp~avi~lL~~~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~-----ga-------tVtv~~s~-------t----- 192 (284)
T PRK14179 137 MIPCTPAGIMEMFREYNVELEGKHAVVIGRSNIVGKPMAQLLLDK-----NA-------TVTLTHSR-------T----- 192 (284)
T ss_pred CcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHHC-----CC-------EEEEECCC-------C-----
Confidence 346778888999999999999999999999 99999999999753 53 34444221 1
Q ss_pred hchhhhhhcCCCCCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 012398 387 FKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALS 444 (464)
Q Consensus 387 ~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaLS 444 (464)
.+|.+++++ +|++|-.-+.++.+++++++ +..+|.=++
T Consensus 193 ------------~~l~~~~~~--ADIVI~avg~~~~v~~~~ik------~GavVIDvg 230 (284)
T PRK14179 193 ------------RNLAEVARK--ADILVVAIGRGHFVTKEFVK------EGAVVIDVG 230 (284)
T ss_pred ------------CCHHHHHhh--CCEEEEecCccccCCHHHcc------CCcEEEEec
Confidence 268899997 99999999999999999865 567777665
No 115
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=91.44 E-value=0.85 Score=47.02 Aligned_cols=92 Identities=12% Similarity=0.184 Sum_probs=71.7
Q ss_pred chhHHHHHHHHHHHHHhCCCCCcceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCc
Q 012398 307 GTASVVLAGILSALKLVGGTLADQTFLFLGAG-EAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQ 385 (464)
Q Consensus 307 GTaaV~LAgll~Alk~~g~~l~d~riv~~GAG-sAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~ 385 (464)
+-.-+|.+|++.=|+-.|.+++.+++||+|-+ ..|.-+|.||.. .| ..+.+|+|+
T Consensus 145 ~~~PcTp~avi~lL~~~~i~l~Gk~vvVIGRS~iVGkPla~lL~~-----~~-------ATVtvchs~------------ 200 (299)
T PLN02516 145 LFLPCTPKGCLELLSRSGIPIKGKKAVVVGRSNIVGLPVSLLLLK-----AD-------ATVTVVHSR------------ 200 (299)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CC-------CEEEEeCCC------------
Confidence 34567778889999999999999999999986 567778887754 24 246777653
Q ss_pred hhchhhhhhcCCCCCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEE
Q 012398 386 HFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFA 442 (464)
Q Consensus 386 ~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFa 442 (464)
.++|.+.+++ +|++|-..+.++.|+.|||+ +..+|+=
T Consensus 201 ------------T~nl~~~~~~--ADIvv~AvGk~~~i~~~~vk------~gavVID 237 (299)
T PLN02516 201 ------------TPDPESIVRE--ADIVIAAAGQAMMIKGDWIK------PGAAVID 237 (299)
T ss_pred ------------CCCHHHHHhh--CCEEEEcCCCcCccCHHHcC------CCCEEEE
Confidence 1357888887 99999999999999999998 4556643
No 116
>PRK14851 hypothetical protein; Provisional
Probab=91.43 E-value=0.89 Score=51.57 Aligned_cols=122 Identities=15% Similarity=0.116 Sum_probs=78.8
Q ss_pred CCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCc-------cCCchhchhhhhh---
Q 012398 325 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRK-------ESLQHFKKPWAHE--- 394 (464)
Q Consensus 325 ~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~-------~~l~~~k~~fa~~--- 394 (464)
++|++.||+|+|+|..|..+|+.|+.+ |+ .+|.++|-+=+-..+-. +++-..|..-++.
T Consensus 39 ~kL~~~~VlIvG~GGlGs~va~~Lar~-----GV------G~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~ 107 (679)
T PRK14851 39 ERLAEAKVAIPGMGGVGGVHLITMVRT-----GI------GRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQAL 107 (679)
T ss_pred HHHhcCeEEEECcCHHHHHHHHHHHHh-----CC------CeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHH
Confidence 678999999999999999999999875 64 68999997633222110 1122223222221
Q ss_pred --cC---------CC--CCHHHHHhcCCCcEEEeccCCCCCC-CHHHHHHHHcCCCCcEEEEcC----------CCCCCC
Q 012398 395 --HA---------PI--KSLLDAVKAIKPTMLMGTSGVGKTF-TKEVVEAMASFNEKPVIFALS----------NPTSQS 450 (464)
Q Consensus 395 --~~---------~~--~~L~e~v~~vkptvLIG~S~~~g~f-t~evv~~Ma~~~erPIIFaLS----------NPt~~~ 450 (464)
.+ .+ .++.+.+++ .|++|-...-. .| ++.+|...|..+..|+|++-. +|.
T Consensus 108 ~inP~~~I~~~~~~i~~~n~~~~l~~--~DvVid~~D~~-~~~~r~~l~~~c~~~~iP~i~~g~~G~~g~~~~~~p~--- 181 (679)
T PRK14851 108 SINPFLEITPFPAGINADNMDAFLDG--VDVVLDGLDFF-QFEIRRTLFNMAREKGIPVITAGPLGYSSAMLVFTPQ--- 181 (679)
T ss_pred HhCCCCeEEEEecCCChHHHHHHHhC--CCEEEECCCCC-cHHHHHHHHHHHHHCCCCEEEeecccccceEEEEcCC---
Confidence 11 11 256677776 89999555321 22 345777788888999999754 676
Q ss_pred CCCHHHHhccccC
Q 012398 451 ECTAEEAYTWSKV 463 (464)
Q Consensus 451 E~tpedA~~wT~g 463 (464)
....++.|.+.++
T Consensus 182 ~~~~~~~~~~~~~ 194 (679)
T PRK14851 182 GMGFDDYFNIGGK 194 (679)
T ss_pred CCCHhHhccCCCC
Confidence 5677777776543
No 117
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=91.39 E-value=0.44 Score=48.02 Aligned_cols=50 Identities=30% Similarity=0.363 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhCCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 313 LAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 313 LAgll~Alk~~g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
..|++.+++-.+..+++++++|+|||-||.+||..+.. .|. ++|+++++.
T Consensus 110 ~~G~~~~l~~~~~~~~~k~vlI~GAGGagrAia~~La~-----~G~------~~V~I~~R~ 159 (289)
T PRK12548 110 GLGFVRNLREHGVDVKGKKLTVIGAGGAATAIQVQCAL-----DGA------KEITIFNIK 159 (289)
T ss_pred HHHHHHHHHhcCCCcCCCEEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 45677888877778889999999999888777766654 353 579999874
No 118
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=91.35 E-value=1.6 Score=44.08 Aligned_cols=33 Identities=24% Similarity=0.405 Sum_probs=26.4
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 329 DQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 329 d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
..||.|+|+|..|.++|..+..+ |. ++++.|+.
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~-----G~-------~V~~~~r~ 36 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASAN-----GH-------RVRVWSRR 36 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHC-----CC-------EEEEEeCC
Confidence 45899999999999999999764 43 56777764
No 119
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=91.27 E-value=0.59 Score=44.83 Aligned_cols=100 Identities=11% Similarity=0.196 Sum_probs=51.9
Q ss_pred CcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhhhcCCCCCHHHHHhc
Q 012398 328 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKA 407 (464)
Q Consensus 328 ~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~ 407 (464)
++.||.|+|+|..|.++|..+... |.. -.++++++++. + .+.+...+.+|- .....++.+++++
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~-----~~~---~~~~i~~~~~~-----~-~~~~~~~~~~~~--~~~~~~~~~~~~~ 66 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKT-----SKE---YIEEIIVSNRS-----N-VEKLDQLQARYN--VSTTTDWKQHVTS 66 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhC-----CCC---CcCeEEEECCC-----C-HHHHHHHHHHcC--cEEeCChHHHHhc
Confidence 457899999999999999988642 311 12346666542 0 011222222221 0112456666654
Q ss_pred CCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCC
Q 012398 408 IKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPT 447 (464)
Q Consensus 408 vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaLSNPt 447 (464)
+|++| ++.++. .-+++++.++.+-+..+|+.++.-.
T Consensus 67 --~DiVi-iavp~~-~~~~v~~~l~~~~~~~~vis~~~gi 102 (245)
T PRK07634 67 --VDTIV-LAMPPS-AHEELLAELSPLLSNQLVVTVAAGI 102 (245)
T ss_pred --CCEEE-EecCHH-HHHHHHHHHHhhccCCEEEEECCCC
Confidence 66655 344342 3366666666432334555555433
No 120
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.18 E-value=0.67 Score=47.60 Aligned_cols=92 Identities=15% Similarity=0.293 Sum_probs=72.1
Q ss_pred hHHHHHHHHHHHHHhCCCCCcceEEEeC-cchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchh
Q 012398 309 ASVVLAGILSALKLVGGTLADQTFLFLG-AGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHF 387 (464)
Q Consensus 309 aaV~LAgll~Alk~~g~~l~d~riv~~G-AGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~ 387 (464)
.-+|-.|++.=|+-.+.+++.++|+|+| .|..|..+|.+|.. .|. .+.+++++ ..
T Consensus 138 ~PcTp~ai~~ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~-----~g~-------tVtv~~~r-------T~----- 193 (296)
T PRK14188 138 VPCTPLGCMMLLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLA-----ANA-------TVTIAHSR-------TR----- 193 (296)
T ss_pred cCCCHHHHHHHHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHh-----CCC-------EEEEECCC-------CC-----
Confidence 4567788888889999999999999999 99999999999975 253 46666432 11
Q ss_pred chhhhhhcCCCCCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 012398 388 KKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALS 444 (464)
Q Consensus 388 k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaLS 444 (464)
+|.|+++. +|++|-+-+.+..+++++++ +.-+|.=++
T Consensus 194 ------------~l~e~~~~--ADIVIsavg~~~~v~~~~lk------~GavVIDvG 230 (296)
T PRK14188 194 ------------DLPAVCRR--ADILVAAVGRPEMVKGDWIK------PGATVIDVG 230 (296)
T ss_pred ------------CHHHHHhc--CCEEEEecCChhhcchheec------CCCEEEEcC
Confidence 37888887 99999888888888888744 566777666
No 121
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.17 E-value=0.94 Score=46.46 Aligned_cols=95 Identities=16% Similarity=0.288 Sum_probs=73.5
Q ss_pred cchhHHHHHHHHHHHHHhCCCCCcceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCC
Q 012398 306 QGTASVVLAGILSALKLVGGTLADQTFLFLGAG-EAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESL 384 (464)
Q Consensus 306 QGTaaV~LAgll~Alk~~g~~l~d~riv~~GAG-sAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l 384 (464)
.+-.-+|-+|++.=++..+.+++..++||+|.+ -.|.-+|.||.. .|. .+.+|+|+
T Consensus 136 ~~~~PcTp~av~~lL~~y~i~l~GK~vvViGrS~iVGkPla~lL~~-----~~A-------TVtichs~----------- 192 (288)
T PRK14171 136 QGFIPCTALGCLAVIKKYEPNLTGKNVVIIGRSNIVGKPLSALLLK-----ENC-------SVTICHSK----------- 192 (288)
T ss_pred CCCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC-----------
Confidence 344677888899999999999999999999975 578888888854 242 35566553
Q ss_pred chhchhhhhhcCCCCCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 012398 385 QHFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALS 444 (464)
Q Consensus 385 ~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaLS 444 (464)
..+|.+.+++ +|++|-..+.++.+++++|+ +..||.=..
T Consensus 193 -------------T~~L~~~~~~--ADIvV~AvGkp~~i~~~~vk------~GavVIDvG 231 (288)
T PRK14171 193 -------------THNLSSITSK--ADIVVAAIGSPLKLTAEYFN------PESIVIDVG 231 (288)
T ss_pred -------------CCCHHHHHhh--CCEEEEccCCCCccCHHHcC------CCCEEEEee
Confidence 1348888887 99999999999999999998 455765433
No 122
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=91.14 E-value=0.89 Score=42.61 Aligned_cols=97 Identities=21% Similarity=0.175 Sum_probs=57.3
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCc-------cCCchhchhhhh----h-cCC-
Q 012398 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRK-------ESLQHFKKPWAH----E-HAP- 397 (464)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~-------~~l~~~k~~fa~----~-~~~- 397 (464)
||+++|+|..|..||+.|+.+ |+ .+|.++|.+= +..+.- +++...|..-+. . .+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~-----Gv------g~i~lvD~D~-v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v 68 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS-----GV------GNLKLVDFDV-VEPSNLNRQQYFLSQIGEPKVEALKENLREINPFV 68 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc-----CC------CeEEEEeCCE-EcCcchhcccccHhhCCChHHHHHHHHHHHHCCCC
Confidence 689999999999999999764 64 6899999873 221110 011111211111 0 011
Q ss_pred ----------CCCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEE
Q 012398 398 ----------IKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFA 442 (464)
Q Consensus 398 ----------~~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFa 442 (464)
..++.+.+++ .|++|.++.-. .....+.+.+.++...|+|++
T Consensus 69 ~i~~~~~~~~~~~~~~~l~~--~DlVi~~~d~~-~~r~~i~~~~~~~~~ip~i~~ 120 (174)
T cd01487 69 KIEAINIKIDENNLEGLFGD--CDIVVEAFDNA-ETKAMLAESLLGNKNKPVVCA 120 (174)
T ss_pred EEEEEEeecChhhHHHHhcC--CCEEEECCCCH-HHHHHHHHHHHHHCCCCEEEE
Confidence 1245566765 89999884422 222335666666657999986
No 123
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=91.00 E-value=0.28 Score=50.83 Aligned_cols=104 Identities=23% Similarity=0.280 Sum_probs=64.2
Q ss_pred CCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCC--Cc-----cCCc--hhchhhh---
Q 012398 325 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSS--RK-----ESLQ--HFKKPWA--- 392 (464)
Q Consensus 325 ~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~--r~-----~~l~--~~k~~fa--- 392 (464)
.+|++.||+|+|+|.-|..+|..|..+ |+ .+|.++|.+-+=..+ |. +++. ..|..-+
T Consensus 20 ~~L~~~~VlVvG~GglGs~va~~La~a-----Gv------g~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~ 88 (339)
T PRK07688 20 QKLREKHVLIIGAGALGTANAEMLVRA-----GV------GKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKR 88 (339)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHH
Confidence 578999999999999999999999764 64 689999996321110 00 0010 0111111
Q ss_pred -hh-cC---------CC--CCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEc
Q 012398 393 -HE-HA---------PI--KSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFAL 443 (464)
Q Consensus 393 -~~-~~---------~~--~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaL 443 (464)
+. .+ .. .++.+.++. .|++|-++.-. =+..++-..+.....|.|++-
T Consensus 89 l~~inp~v~v~~~~~~~~~~~~~~~~~~--~DlVid~~Dn~--~~r~~ln~~~~~~~iP~i~~~ 148 (339)
T PRK07688 89 LEEINSDVRVEAIVQDVTAEELEELVTG--VDLIIDATDNF--ETRFIVNDAAQKYGIPWIYGA 148 (339)
T ss_pred HHHHCCCcEEEEEeccCCHHHHHHHHcC--CCEEEEcCCCH--HHHHHHHHHHHHhCCCEEEEe
Confidence 11 01 11 245566665 78888876532 356677777777788988754
No 124
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.97 E-value=0.79 Score=47.11 Aligned_cols=96 Identities=17% Similarity=0.266 Sum_probs=71.2
Q ss_pred hHHHHHHHHHHHHHhCCCCCcceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchh
Q 012398 309 ASVVLAGILSALKLVGGTLADQTFLFLGAG-EAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHF 387 (464)
Q Consensus 309 aaV~LAgll~Alk~~g~~l~d~riv~~GAG-sAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~ 387 (464)
.-+|.+|++.=++..+.+++.+++||+|.+ -.|.-+|.||.+.+.+ .| ..+..+.++
T Consensus 139 ~PcTp~ail~ll~~y~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~-~~-------atVt~~hs~-------------- 196 (295)
T PRK14174 139 VSCTPYGILELLGRYNIETKGKHCVVVGRSNIVGKPMANLMLQKLKE-SN-------CTVTICHSA-------------- 196 (295)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHhcccc-CC-------CEEEEEeCC--------------
Confidence 346777889999999999999999999986 5688888888642211 11 234444432
Q ss_pred chhhhhhcCCCCCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 012398 388 KKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALS 444 (464)
Q Consensus 388 k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaLS 444 (464)
..+|.+.+++ +|++|+..+.++.|++++|+ +..+|.-.+
T Consensus 197 ----------t~~l~~~~~~--ADIvI~Avg~~~li~~~~vk------~GavVIDVg 235 (295)
T PRK14174 197 ----------TKDIPSYTRQ--ADILIAAIGKARFITADMVK------PGAVVIDVG 235 (295)
T ss_pred ----------chhHHHHHHh--CCEEEEecCccCccCHHHcC------CCCEEEEee
Confidence 1348888987 99999999999999999994 566775544
No 125
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=90.89 E-value=0.59 Score=46.63 Aligned_cols=88 Identities=20% Similarity=0.298 Sum_probs=55.2
Q ss_pred HHHHHHHHHH-hCCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhh
Q 012398 313 LAGILSALKL-VGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPW 391 (464)
Q Consensus 313 LAgll~Alk~-~g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~f 391 (464)
..|++++++- .+..+++.+++|+|||.+|-+++..|.. .|+ .+|+++++. .++ .......+
T Consensus 106 ~~G~~~~l~~~~~~~~~~k~vlVlGaGg~a~ai~~aL~~-----~g~------~~V~v~~R~----~~~---a~~l~~~~ 167 (278)
T PRK00258 106 GIGFVRALEERLGVDLKGKRILILGAGGAARAVILPLLD-----LGV------AEITIVNRT----VER---AEELAKLF 167 (278)
T ss_pred HHHHHHHHHhccCCCCCCCEEEEEcCcHHHHHHHHHHHH-----cCC------CEEEEEeCC----HHH---HHHHHHHh
Confidence 4567777774 5678999999999999999999888864 353 579999885 222 11111222
Q ss_pred hhhc-CCC-CCHHHHHhcCCCcEEEeccCCC
Q 012398 392 AHEH-API-KSLLDAVKAIKPTMLMGTSGVG 420 (464)
Q Consensus 392 a~~~-~~~-~~L~e~v~~vkptvLIG~S~~~ 420 (464)
.... -.. .++.+++.. +|++|-++..+
T Consensus 168 ~~~~~~~~~~~~~~~~~~--~DivInaTp~g 196 (278)
T PRK00258 168 GALGKAELDLELQEELAD--FDLIINATSAG 196 (278)
T ss_pred hhccceeecccchhcccc--CCEEEECCcCC
Confidence 1110 011 123455554 89999887654
No 126
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=90.79 E-value=1.5 Score=44.80 Aligned_cols=103 Identities=23% Similarity=0.332 Sum_probs=64.6
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccC---cccCCCccCCchhchhhhhhcCCC---CCHH
Q 012398 330 QTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKG---LIVSSRKESLQHFKKPWAHEHAPI---KSLL 402 (464)
Q Consensus 330 ~riv~~GA-GsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~G---Ll~~~r~~~l~~~k~~fa~~~~~~---~~L~ 402 (464)
.||.|+|| |..|..+|..++. .|+ ...++++|++- .+...+.+ +.+....+... ..+ .+ .
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~-----~g~-----~~~v~lvd~~~~~~~l~~~~~d-l~d~~~~~~~~-~~i~~~~d-~ 67 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAK-----EDV-----VKEINLISRPKSLEKLKGLRLD-IYDALAAAGID-AEIKISSD-L 67 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHh-----CCC-----CCEEEEEECcccccccccccch-hhhchhccCCC-cEEEECCC-H
Confidence 37999998 9999999998865 354 24799999852 11111111 11110000000 111 24 4
Q ss_pred HHHhcCCCcEEEeccCCC---C-----------CCCHHHHHHHHcCCCCcEEEEcCCCC
Q 012398 403 DAVKAIKPTMLMGTSGVG---K-----------TFTKEVVEAMASFNEKPVIFALSNPT 447 (464)
Q Consensus 403 e~v~~vkptvLIG~S~~~---g-----------~ft~evv~~Ma~~~erPIIFaLSNPt 447 (464)
+.+++ +|++|=+.+.+ | .+-+++++.|.+++...+|+--+||.
T Consensus 68 ~~l~~--aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~npv 124 (309)
T cd05294 68 SDVAG--SDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPV 124 (309)
T ss_pred HHhCC--CCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCch
Confidence 45776 99988555432 2 24567888899999999999999997
No 127
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.78 E-value=1.1 Score=46.25 Aligned_cols=98 Identities=17% Similarity=0.244 Sum_probs=73.6
Q ss_pred chhHHHHHHHHHHHHHhCCCCCcceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCc
Q 012398 307 GTASVVLAGILSALKLVGGTLADQTFLFLGAG-EAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQ 385 (464)
Q Consensus 307 GTaaV~LAgll~Alk~~g~~l~d~riv~~GAG-sAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~ 385 (464)
+-.-+|-+|++.=|+-.|.+++.++++|+|.+ ..|.-+|.||.. .|+. ....+.+|.|+
T Consensus 139 ~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~~~---~~atVtv~hs~------------ 198 (297)
T PRK14168 139 KFLPCTPAGIQEMLVRSGVETSGAEVVVVGRSNIVGKPIANMMTQ-----KGPG---ANATVTIVHTR------------ 198 (297)
T ss_pred CCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcccHHHHHHHHh-----cccC---CCCEEEEecCC------------
Confidence 44567788889999999999999999999985 567778887754 2221 01245555443
Q ss_pred hhchhhhhhcCCCCCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 012398 386 HFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALS 444 (464)
Q Consensus 386 ~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaLS 444 (464)
.++|.+.+++ +|++|-+.+.++.|+++||+ +..+|+=-.
T Consensus 199 ------------T~~l~~~~~~--ADIvVsAvGkp~~i~~~~ik------~gavVIDvG 237 (297)
T PRK14168 199 ------------SKNLARHCQR--ADILIVAAGVPNLVKPEWIK------PGATVIDVG 237 (297)
T ss_pred ------------CcCHHHHHhh--CCEEEEecCCcCccCHHHcC------CCCEEEecC
Confidence 1358888987 99999999999999999998 566776554
No 128
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.75 E-value=1 Score=46.14 Aligned_cols=93 Identities=17% Similarity=0.324 Sum_probs=71.5
Q ss_pred hHHHHHHHHHHHHHhCCCCCcceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchh
Q 012398 309 ASVVLAGILSALKLVGGTLADQTFLFLGAG-EAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHF 387 (464)
Q Consensus 309 aaV~LAgll~Alk~~g~~l~d~riv~~GAG-sAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~ 387 (464)
.-+|-.|++.-++-.|.+++.+++|++|.+ ..|.-+|.||..- ..| ..+.+|.|+
T Consensus 138 ~PcTp~av~~ll~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~---~~~-------atVtvchs~-------------- 193 (284)
T PRK14193 138 LPCTPRGIVHLLRRYDVELAGAHVVVIGRGVTVGRPIGLLLTRR---SEN-------ATVTLCHTG-------------- 193 (284)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHhhc---cCC-------CEEEEeCCC--------------
Confidence 467888899999999999999999999985 5788888888531 012 235555552
Q ss_pred chhhhhhcCCCCCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEc
Q 012398 388 KKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFAL 443 (464)
Q Consensus 388 k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaL 443 (464)
..+|.+.+++ +|++|-..+.++.+++|+|+ +..+|+=-
T Consensus 194 ----------T~~l~~~~k~--ADIvV~AvGkp~~i~~~~ik------~GavVIDv 231 (284)
T PRK14193 194 ----------TRDLAAHTRR--ADIIVAAAGVAHLVTADMVK------PGAAVLDV 231 (284)
T ss_pred ----------CCCHHHHHHh--CCEEEEecCCcCccCHHHcC------CCCEEEEc
Confidence 1358888987 99999999999999999998 45566543
No 129
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.69 E-value=1.1 Score=46.04 Aligned_cols=92 Identities=15% Similarity=0.224 Sum_probs=71.9
Q ss_pred hhHHHHHHHHHHHHHhCCCCCcceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCch
Q 012398 308 TASVVLAGILSALKLVGGTLADQTFLFLGAG-EAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQH 386 (464)
Q Consensus 308 TaaV~LAgll~Alk~~g~~l~d~riv~~GAG-sAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~ 386 (464)
-.-+|..|++.-|+-.+.+++.+++|++|.+ -.|.-+|.||.. .| ..+.+|+|+-
T Consensus 139 ~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~-------aTVt~chs~T------------ 194 (294)
T PRK14187 139 LIPCTPKGCLYLIKTITRNLSGSDAVVIGRSNIVGKPMACLLLG-----EN-------CTVTTVHSAT------------ 194 (294)
T ss_pred ccCcCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhh-----CC-------CEEEEeCCCC------------
Confidence 3566888889999999999999999999986 567888888754 23 2466666531
Q ss_pred hchhhhhhcCCCCCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEc
Q 012398 387 FKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFAL 443 (464)
Q Consensus 387 ~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaL 443 (464)
.+|.+.+++ +|++|-..+.++.++++||+ +..||+=-
T Consensus 195 ------------~~l~~~~~~--ADIvVsAvGkp~~i~~~~ik------~gaiVIDV 231 (294)
T PRK14187 195 ------------RDLADYCSK--ADILVAAVGIPNFVKYSWIK------KGAIVIDV 231 (294)
T ss_pred ------------CCHHHHHhh--CCEEEEccCCcCccCHHHcC------CCCEEEEe
Confidence 347788887 99999999999999999998 55676543
No 130
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=90.66 E-value=0.27 Score=53.11 Aligned_cols=119 Identities=17% Similarity=0.312 Sum_probs=78.6
Q ss_pred CcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhhh-cCC-----CCCH
Q 012398 328 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE-HAP-----IKSL 401 (464)
Q Consensus 328 ~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~-~~~-----~~~L 401 (464)
+..||+|+||||.. .++++...+.+.+.++ ...|||+|-+ .+|.+.....-+.+.+. ..+ ..++
T Consensus 2 ~~~KI~iIGgGSt~--tp~~v~g~l~~~e~l~----~~el~L~Did----~~r~~~i~~~~~~~v~~~g~~~kv~~ttd~ 71 (442)
T COG1486 2 KKFKIVIIGGGSTY--TPKLLLGDLARTEELP----VRELALYDID----EERLKIIAILAKKLVEEAGAPVKVEATTDR 71 (442)
T ss_pred CcceEEEECCCccc--cHHHHHHHHhcCccCC----cceEEEEeCC----HHHHHHHHHHHHHHHHhhCCCeEEEEecCH
Confidence 45799999999975 5677777776666666 4689999974 44432111122333332 122 2589
Q ss_pred HHHHhcCCCcEEE---------------------ec-----cCCCCCCC--------HHHHHHHHcCCCCcEEEEcCCCC
Q 012398 402 LDAVKAIKPTMLM---------------------GT-----SGVGKTFT--------KEVVEAMASFNEKPVIFALSNPT 447 (464)
Q Consensus 402 ~e~v~~vkptvLI---------------------G~-----S~~~g~ft--------~evv~~Ma~~~erPIIFaLSNPt 447 (464)
.+|+++ +|.+| |+ .++||.|. -|+++.|-+.|+..-++=-+||-
T Consensus 72 ~eAl~g--AdfVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m~~~~P~Aw~lNytNP~ 149 (442)
T COG1486 72 REALEG--ADFVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDMEKVCPNAWMLNYTNPA 149 (442)
T ss_pred HHHhcC--CCEEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHHHHhCCCceEEeccChH
Confidence 999998 88877 11 12333322 48899999999999999999999
Q ss_pred CCCCCCHHHHhccc
Q 012398 448 SQSECTAEEAYTWS 461 (464)
Q Consensus 448 ~~~E~tpedA~~wT 461 (464)
+++|-. +++|+
T Consensus 150 --~~vTeA-v~r~~ 160 (442)
T COG1486 150 --AIVTEA-VRRLY 160 (442)
T ss_pred --HHHHHH-HHHhC
Confidence 777643 34444
No 131
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=90.62 E-value=0.74 Score=44.13 Aligned_cols=96 Identities=14% Similarity=0.135 Sum_probs=60.2
Q ss_pred eEEEeC-cchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhh---hh-c----CCCCCH
Q 012398 331 TFLFLG-AGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWA---HE-H----APIKSL 401 (464)
Q Consensus 331 riv~~G-AGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa---~~-~----~~~~~L 401 (464)
||.|+| +|..|.++|..+.+. | .++++.|++ .++ +......+. .. . -...+.
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~-----G-------~~V~v~~r~----~~~---~~~l~~~~~~~~~~~g~~~~~~~~~~ 62 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKA-----G-------NKIIIGSRD----LEK---AEEAAAKALEELGHGGSDIKVTGADN 62 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhC-----C-------CEEEEEEcC----HHH---HHHHHHHHHhhccccCCCceEEEeCh
Confidence 799997 899999999998752 4 467777663 111 211111111 10 0 011367
Q ss_pred HHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCC
Q 012398 402 LDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQ 449 (464)
Q Consensus 402 ~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaLSNPt~~ 449 (464)
.++++. +|++| ++.++ ...+++++.++..-...+|+.++||...
T Consensus 63 ~ea~~~--aDvVi-lavp~-~~~~~~l~~l~~~l~~~vvI~~~ngi~~ 106 (219)
T TIGR01915 63 AEAAKR--ADVVI-LAVPW-DHVLKTLESLRDELSGKLVISPVVPLAS 106 (219)
T ss_pred HHHHhc--CCEEE-EECCH-HHHHHHHHHHHHhccCCEEEEeccCcee
Confidence 788886 88877 55544 3557888888654444799999999854
No 132
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=90.54 E-value=0.61 Score=51.27 Aligned_cols=184 Identities=15% Similarity=0.213 Sum_probs=95.0
Q ss_pred cccccCccccccccCCCChhhHHHHHHHHHHHHHHhcCCCeeeeeecCCCccHHHHHHHHcCCCceee--cCccchhHHH
Q 012398 235 EQLLNDEFYIGLRQKRATGQEYAELLQEFMTAVKQNYGEKVLIQFEDFANHNAFELLSKYSSSHLVFN--DDIQGTASVV 312 (464)
Q Consensus 235 e~Ll~Dp~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~af~iL~ryr~~~~~Fn--DDiQGTaaV~ 312 (464)
+.|..+-.|+|+-|+--. .|.++++.++ .=++|-+|.+-. | +|- .+..+|. ..|-|-.+|.
T Consensus 80 ~~l~~g~tli~~l~p~~n--------~~ll~~l~~k--~it~ia~E~vpr-----i-sra-q~~d~lssma~iAGy~Avi 142 (511)
T TIGR00561 80 AELPAGKALVSFIWPAQN--------PELMEKLAAK--NITVLAMDAVPR-----I-SRA-QKLDALSSMANIAGYRAII 142 (511)
T ss_pred HhcCCCCEEEEEcCccCC--------HHHHHHHHHc--CCEEEEeecccc-----c-ccC-CccCcchhhHHHHHHHHHH
Confidence 445566677777775331 2333333332 234566775531 0 111 1233332 4556666665
Q ss_pred HHHHHHHHHHhC-----CCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCch-
Q 012398 313 LAGILSALKLVG-----GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQH- 386 (464)
Q Consensus 313 LAgll~Alk~~g-----~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~- 386 (464)
.|+=.-.-...| ......|++|+|+|.+|+..+..+.. .|. +++++|.+.-... +...+..
T Consensus 143 ~Aa~~lgr~~~g~~taag~vp~akVlViGaG~iGl~Aa~~ak~-----lGA-------~V~v~d~~~~rle-~a~~lGa~ 209 (511)
T TIGR00561 143 EAAHEFGRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAANS-----LGA-------IVRAFDTRPEVKE-QVQSMGAE 209 (511)
T ss_pred HHHHHhhhhcCCceecCCCCCCCEEEEECCCHHHHHHHHHHHH-----CCC-------EEEEEeCCHHHHH-HHHHcCCe
Confidence 554333322222 13456899999999999998887754 252 3777787643110 0000100
Q ss_pred -----------hchhhhhhcCC------CCCHHHHHhcCCCcEEEeccCCCC-----CCCHHHHHHHHcCCCCcEEEEcC
Q 012398 387 -----------FKKPWAHEHAP------IKSLLDAVKAIKPTMLMGTSGVGK-----TFTKEVVEAMASFNEKPVIFALS 444 (464)
Q Consensus 387 -----------~k~~fa~~~~~------~~~L~e~v~~vkptvLIG~S~~~g-----~ft~evv~~Ma~~~erPIIFaLS 444 (464)
...-||+...+ ..-+.+.++. .|++|++.-++| ++|+++++.|.. .-.||- ||
T Consensus 210 ~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~~~~--~DIVI~TalipG~~aP~Lit~emv~~MKp--GsvIVD-lA 284 (511)
T TIGR00561 210 FLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQAKE--VDIIITTALIPGKPAPKLITEEMVDSMKA--GSVIVD-LA 284 (511)
T ss_pred EEeccccccccccccceeecCHHHHHHHHHHHHHHhCC--CCEEEECcccCCCCCCeeehHHHHhhCCC--CCEEEE-ee
Confidence 00112221100 0115555665 999999984444 589999999974 233543 33
Q ss_pred -CCCCCCCCC
Q 012398 445 -NPTSQSECT 453 (464)
Q Consensus 445 -NPt~~~E~t 453 (464)
.|--..|++
T Consensus 285 ~d~GGn~E~t 294 (511)
T TIGR00561 285 AEQGGNCEYT 294 (511)
T ss_pred eCCCCCEEEe
Confidence 233344444
No 133
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=90.48 E-value=0.47 Score=41.95 Aligned_cols=103 Identities=21% Similarity=0.214 Sum_probs=62.3
Q ss_pred CcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCcc-------CCchhchhhhhh----c-
Q 012398 328 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKE-------SLQHFKKPWAHE----H- 395 (464)
Q Consensus 328 ~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~-------~l~~~k~~fa~~----~- 395 (464)
++.||+++|+|+-|.-+|+.|+.. |+ .+|.++|.+=+=..+-.. ++...|..-+++ .
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~-----Gv------~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~n 69 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARS-----GV------GKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEIN 69 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHH-----TT------SEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHS
T ss_pred CCCEEEEECcCHHHHHHHHHHHHh-----CC------CceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhc
Confidence 478999999999999999999875 64 689999987442222111 111222222211 1
Q ss_pred CC---------C--CCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCC
Q 012398 396 AP---------I--KSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSN 445 (464)
Q Consensus 396 ~~---------~--~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaLSN 445 (464)
+. . ..+.+.++. .|++|.++... =.+..+..++.....|+|.+-.+
T Consensus 70 p~~~v~~~~~~~~~~~~~~~~~~--~d~vi~~~d~~--~~~~~l~~~~~~~~~p~i~~~~~ 126 (135)
T PF00899_consen 70 PDVEVEAIPEKIDEENIEELLKD--YDIVIDCVDSL--AARLLLNEICREYGIPFIDAGVN 126 (135)
T ss_dssp TTSEEEEEESHCSHHHHHHHHHT--SSEEEEESSSH--HHHHHHHHHHHHTT-EEEEEEEE
T ss_pred CceeeeeeecccccccccccccC--CCEEEEecCCH--HHHHHHHHHHHHcCCCEEEEEee
Confidence 11 1 135566654 88888877642 34456666777777888887654
No 134
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.46 E-value=1.2 Score=45.69 Aligned_cols=93 Identities=19% Similarity=0.359 Sum_probs=72.0
Q ss_pred hhHHHHHHHHHHHHHhCCCCCcceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCch
Q 012398 308 TASVVLAGILSALKLVGGTLADQTFLFLGAG-EAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQH 386 (464)
Q Consensus 308 TaaV~LAgll~Alk~~g~~l~d~riv~~GAG-sAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~ 386 (464)
-.-+|-+|++.=|+-.|.+++.+++||+|.+ ..|.-+|.||.. .|. .+.+|+|+
T Consensus 136 ~~PcTp~avi~lL~~~~i~l~Gk~vvVvGrS~iVGkPla~lL~~-----~~a-------tVtichs~------------- 190 (284)
T PRK14170 136 FVPCTPAGIIELIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLN-----ENA-------TVTIAHSR------------- 190 (284)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC-------------
Confidence 4567788889999999999999999999986 567788887754 232 45566542
Q ss_pred hchhhhhhcCCCCCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 012398 387 FKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALS 444 (464)
Q Consensus 387 ~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaLS 444 (464)
..+|.+.++. +|++|-..+.++.|++++|+ +..||+=..
T Consensus 191 -----------T~~l~~~~~~--ADIvI~AvG~~~~i~~~~vk------~GavVIDvG 229 (284)
T PRK14170 191 -----------TKDLPQVAKE--ADILVVATGLAKFVKKDYIK------PGAIVIDVG 229 (284)
T ss_pred -----------CCCHHHHHhh--CCEEEEecCCcCccCHHHcC------CCCEEEEcc
Confidence 1347888887 99999999999999999998 556775443
No 135
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=90.32 E-value=0.62 Score=47.54 Aligned_cols=47 Identities=38% Similarity=0.499 Sum_probs=38.4
Q ss_pred HHHHHHHHhC--CCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcc
Q 012398 315 GILSALKLVG--GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDS 372 (464)
Q Consensus 315 gll~Alk~~g--~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~ 372 (464)
|+..+|+-.+ ...+.+++|++|||-|+.+|+-.|.++ |. ++|+++++
T Consensus 110 G~~~~L~~~~~~~~~~~~~vlilGAGGAarAv~~aL~~~-----g~------~~i~V~NR 158 (283)
T COG0169 110 GFLRALKEFGLPVDVTGKRVLILGAGGAARAVAFALAEA-----GA------KRITVVNR 158 (283)
T ss_pred HHHHHHHhcCCCcccCCCEEEEECCcHHHHHHHHHHHHc-----CC------CEEEEEeC
Confidence 5677888755 456789999999999999999888763 53 68999988
No 136
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.19 E-value=1.3 Score=45.39 Aligned_cols=95 Identities=17% Similarity=0.264 Sum_probs=73.9
Q ss_pred cchhHHHHHHHHHHHHHhCCCCCcceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCC
Q 012398 306 QGTASVVLAGILSALKLVGGTLADQTFLFLGAG-EAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESL 384 (464)
Q Consensus 306 QGTaaV~LAgll~Alk~~g~~l~d~riv~~GAG-sAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l 384 (464)
.+-.-+|.+|++.=|+-.+.+++.+++|++|-+ ..|--+|.||.. .|. .+.+|+|+ .
T Consensus 134 ~~~~PcTp~avi~lL~~y~i~l~Gk~vvVvGrS~iVGkPla~lL~~-----~~a-------tVt~chs~-------T--- 191 (282)
T PRK14166 134 SGFLPCTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLN-----AGA-------TVSVCHIK-------T--- 191 (282)
T ss_pred CCCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC-------C---
Confidence 344677888999999999999999999999986 578888888854 232 35556553 1
Q ss_pred chhchhhhhhcCCCCCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 012398 385 QHFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALS 444 (464)
Q Consensus 385 ~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaLS 444 (464)
++|.+.+++ +|++|-..+.++.|++++|+ +..||+=-.
T Consensus 192 --------------~nl~~~~~~--ADIvIsAvGkp~~i~~~~vk------~GavVIDvG 229 (282)
T PRK14166 192 --------------KDLSLYTRQ--ADLIIVAAGCVNLLRSDMVK------EGVIVVDVG 229 (282)
T ss_pred --------------CCHHHHHhh--CCEEEEcCCCcCccCHHHcC------CCCEEEEec
Confidence 348888887 99999999999999999998 566775544
No 137
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=90.18 E-value=0.84 Score=47.53 Aligned_cols=104 Identities=18% Similarity=0.203 Sum_probs=66.0
Q ss_pred CCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCc-------cCCchhchhhhh----
Q 012398 325 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRK-------ESLQHFKKPWAH---- 393 (464)
Q Consensus 325 ~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~-------~~l~~~k~~fa~---- 393 (464)
++|++.||+|+|+|..|.-+|+.|+.+ |+ ++|.++|.+=+=..+-. +++-..|..-|.
T Consensus 24 ~~L~~~~VlivG~GGlGs~~a~~La~~-----Gv------g~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~ 92 (355)
T PRK05597 24 QSLFDAKVAVIGAGGLGSPALLYLAGA-----GV------GHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAML 92 (355)
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHH
Confidence 568899999999999999999999764 64 68999998732111100 011111211111
Q ss_pred h-cCC---------C--CCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEc
Q 012398 394 E-HAP---------I--KSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFAL 443 (464)
Q Consensus 394 ~-~~~---------~--~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaL 443 (464)
. .+. + .+..+.++. .|++|-++.- .=+..++..++.....|.|++-
T Consensus 93 ~~np~v~v~~~~~~i~~~~~~~~~~~--~DvVvd~~d~--~~~r~~~n~~c~~~~ip~v~~~ 150 (355)
T PRK05597 93 ALNPDVKVTVSVRRLTWSNALDELRD--ADVILDGSDN--FDTRHLASWAAARLGIPHVWAS 150 (355)
T ss_pred HHCCCcEEEEEEeecCHHHHHHHHhC--CCEEEECCCC--HHHHHHHHHHHHHcCCCEEEEE
Confidence 1 011 1 134566665 8998877652 2466678888888889999864
No 138
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=90.06 E-value=1.7 Score=44.82 Aligned_cols=121 Identities=15% Similarity=0.159 Sum_probs=72.1
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcc--cCCCccCCchhchhhhhhcCCCCCHHHHHhc
Q 012398 331 TFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLI--VSSRKESLQHFKKPWAHEHAPIKSLLDAVKA 407 (464)
Q Consensus 331 riv~~GA-GsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl--~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~ 407 (464)
||.|+|| |..|..+|..|+. .|+-..+..-.+.|+|.+.-. ..+..-+|.+...++........+..+++++
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~-----~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~ 75 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIAR-----GRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTD 75 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHh-----ccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCC
Confidence 6899999 9999999998865 244100001169999984321 1111112433332332111111256788887
Q ss_pred CCCcEEEeccCCC---CC-----------CCHHHHHHHHcC-CCCcEEEEcCCCCCCCCCCHHHHhccc
Q 012398 408 IKPTMLMGTSGVG---KT-----------FTKEVVEAMASF-NEKPVIFALSNPTSQSECTAEEAYTWS 461 (464)
Q Consensus 408 vkptvLIG~S~~~---g~-----------ft~evv~~Ma~~-~erPIIFaLSNPt~~~E~tpedA~~wT 461 (464)
.|++|=+.+.+ |- +=+++++.|+++ ++..||+-.|||. .+..--+++++
T Consensus 76 --aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPv---Dv~t~v~~~~s 139 (324)
T TIGR01758 76 --VDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPA---NTNALVLSNYA 139 (324)
T ss_pred --CCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcH---HHHHHHHHHHc
Confidence 99998555544 21 125778889999 4999999999998 44444444444
No 139
>PRK08291 ectoine utilization protein EutC; Validated
Probab=89.91 E-value=2.5 Score=43.38 Aligned_cols=115 Identities=15% Similarity=0.189 Sum_probs=66.1
Q ss_pred HHHHHHHHhCCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhhh
Q 012398 315 GILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE 394 (464)
Q Consensus 315 gll~Alk~~g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~ 394 (464)
|++++..... -..++++|+|+|..|..++..+... .+ .++|.++++. .++ .....+.+.+.
T Consensus 120 ~~~a~~~la~--~~~~~v~IiGaG~~a~~~~~al~~~----~~------~~~V~v~~R~----~~~---a~~l~~~~~~~ 180 (330)
T PRK08291 120 GAVAARHLAR--EDASRAAVIGAGEQARLQLEALTLV----RP------IREVRVWARD----AAK---AEAYAADLRAE 180 (330)
T ss_pred HHHHHHHhCC--CCCCEEEEECCCHHHHHHHHHHHhc----CC------CCEEEEEcCC----HHH---HHHHHHHHhhc
Confidence 4455554432 2346999999999988888766542 23 2578888763 222 22222222211
Q ss_pred ----cCCCCCHHHHHhcCCCcEEEeccCC-CCCCCHHHHHHHHcCCCCcEEEEc-CCCCCCCCCCHHH
Q 012398 395 ----HAPIKSLLDAVKAIKPTMLMGTSGV-GKTFTKEVVEAMASFNEKPVIFAL-SNPTSQSECTAEE 456 (464)
Q Consensus 395 ----~~~~~~L~e~v~~vkptvLIG~S~~-~g~ft~evv~~Ma~~~erPIIFaL-SNPt~~~E~tped 456 (464)
-....++.++++. +|++|-++.. ...|+.++++.- .-|.++ |+--.+-|+.|+-
T Consensus 181 ~g~~v~~~~d~~~al~~--aDiVi~aT~s~~p~i~~~~l~~g------~~v~~vg~d~~~~rEld~~~ 240 (330)
T PRK08291 181 LGIPVTVARDVHEAVAG--ADIIVTTTPSEEPILKAEWLHPG------LHVTAMGSDAEHKNEIAPAV 240 (330)
T ss_pred cCceEEEeCCHHHHHcc--CCEEEEeeCCCCcEecHHHcCCC------ceEEeeCCCCCCcccCCHHH
Confidence 0123689999986 8999876533 347888877532 123333 4433455777754
No 140
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=89.74 E-value=1 Score=46.13 Aligned_cols=102 Identities=18% Similarity=0.260 Sum_probs=65.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhhhcCC---CCCHHHHHh
Q 012398 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAP---IKSLLDAVK 406 (464)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~~~~---~~~L~e~v~ 406 (464)
.||.|+|||..|..+|-.|+. .|+ ...|.|+|.+-=...+-.-+|.+.. +|... .. .++.++ ++
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~-----~~~-----~~el~LiD~~~~~~~g~a~Dl~~~~-~~~~~-~~v~~~~dy~~-~~ 70 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILA-----KGL-----ADELVLVDVVEDKLKGEAMDLQHGS-AFLKN-PKIEADKDYSV-TA 70 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCccHHHHHHHHHHHhh-ccCCC-CEEEECCCHHH-hC
Confidence 499999999999999998764 355 4679999974211111111132221 23221 11 145655 77
Q ss_pred cCCCcEEEeccCC---CCCCC------------HHHHHHHHcCCCCcEEEEcCCCC
Q 012398 407 AIKPTMLMGTSGV---GKTFT------------KEVVEAMASFNEKPVIFALSNPT 447 (464)
Q Consensus 407 ~vkptvLIG~S~~---~g~ft------------~evv~~Ma~~~erPIIFaLSNPt 447 (464)
+ +|++|=+.+. +| -| +++++.|.+++.+.+|+-.|||.
T Consensus 71 ~--adivvitaG~~~k~g-~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~ 123 (312)
T cd05293 71 N--SKVVIVTAGARQNEG-ESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPV 123 (312)
T ss_pred C--CCEEEECCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChH
Confidence 6 9998754443 23 23 36788889999999999999998
No 141
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=89.71 E-value=1.5 Score=46.19 Aligned_cols=25 Identities=16% Similarity=0.356 Sum_probs=21.6
Q ss_pred CCCcceEEEeCcchHHHHHHHHHHH
Q 012398 326 TLADQTFLFLGAGEAGTGIAELIAL 350 (464)
Q Consensus 326 ~l~d~riv~~GAGsAg~GiA~ll~~ 350 (464)
+-...||.|+|||+-|+++|..+.+
T Consensus 8 ~~~~~ki~ViGaG~wGtAlA~~l~~ 32 (365)
T PTZ00345 8 RCGPLKVSVIGSGNWGSAISKVVGE 32 (365)
T ss_pred ccCCCeEEEECCCHHHHHHHHHHHh
Confidence 3445799999999999999999975
No 142
>PRK08374 homoserine dehydrogenase; Provisional
Probab=89.66 E-value=2.1 Score=44.31 Aligned_cols=103 Identities=17% Similarity=0.212 Sum_probs=62.5
Q ss_pred ceEEEeCcchHHHHHHHHHHH---HHHHhcCCChhhhcCeEEEEcccCcccCCCccCCch-----hchhhhhh---c---
Q 012398 330 QTFLFLGAGEAGTGIAELIAL---EMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQH-----FKKPWAHE---H--- 395 (464)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~---a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~-----~k~~fa~~---~--- 395 (464)
.+|.++|.|..|.+++++|.+ .+.++.|+. .+=+-+.|++|-+...+. ++. +++.+... .
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~----l~VvaV~ds~~~~~~~~G--id~~~l~~~~~~~~~~~~~~~~~ 76 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVE----LKVVSITDTSGTIWLPED--IDLREAKEVKENFGKLSNWGNDY 76 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCC----EEEEEEEeCCccccCCCC--CChHHHHHhhhccCchhhccccc
Confidence 589999999999999999976 333334532 122446799998876542 322 22222110 0
Q ss_pred C-CCCCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEE
Q 012398 396 A-PIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIF 441 (464)
Q Consensus 396 ~-~~~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIF 441 (464)
. ...++.|.++...+||+|-+++.. ...+-+.+.+. +..++|.
T Consensus 77 ~~~~~~~~ell~~~~~DVvVd~t~~~-~a~~~~~~al~--~G~~VVt 120 (336)
T PRK08374 77 EVYNFSPEEIVEEIDADIVVDVTNDK-NAHEWHLEALK--EGKSVVT 120 (336)
T ss_pred cccCCCHHHHHhcCCCCEEEECCCcH-HHHHHHHHHHh--hCCcEEE
Confidence 0 112788988877899999998643 33333333443 3567764
No 143
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=89.56 E-value=0.8 Score=46.05 Aligned_cols=101 Identities=19% Similarity=0.386 Sum_probs=60.5
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhhhcCC---CCCHHHHHhcC
Q 012398 332 FLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAP---IKSLLDAVKAI 408 (464)
Q Consensus 332 iv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~~~~---~~~L~e~v~~v 408 (464)
|.|+|||..|.++|..+.. .|+ + .++++|.+==..++..-++.+.. .+...... ..+. +++++
T Consensus 1 I~IIGaG~vG~~ia~~la~-----~~l----~--eV~L~Di~e~~~~g~~~dl~~~~-~~~~~~~~I~~t~d~-~~l~d- 66 (300)
T cd01339 1 ISIIGAGNVGATLAQLLAL-----KEL----G--DVVLLDIVEGLPQGKALDISQAA-PILGSDTKVTGTNDY-EDIAG- 66 (300)
T ss_pred CEEECCCHHHHHHHHHHHh-----CCC----c--EEEEEeCCCcHHHHHHHHHHHhh-hhcCCCeEEEEcCCH-HHhCC-
Confidence 5799999999999997764 354 2 69999986101010000011110 00000001 1355 45776
Q ss_pred CCcEEEeccCCC---C-----------CCCHHHHHHHHcCCCCcEEEEcCCCC
Q 012398 409 KPTMLMGTSGVG---K-----------TFTKEVVEAMASFNEKPVIFALSNPT 447 (464)
Q Consensus 409 kptvLIG~S~~~---g-----------~ft~evv~~Ma~~~erPIIFaLSNPt 447 (464)
+|++|=+.+.+ | .+-+++++.|.+++...+|+-.|||.
T Consensus 67 -ADiVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~ 118 (300)
T cd01339 67 -SDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPL 118 (300)
T ss_pred -CCEEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH
Confidence 89988433322 1 13458899999999999999999998
No 144
>PRK07574 formate dehydrogenase; Provisional
Probab=89.34 E-value=4 Score=43.41 Aligned_cols=94 Identities=16% Similarity=0.150 Sum_probs=59.6
Q ss_pred CCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhhhcCCCCCHHH
Q 012398 324 GGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLD 403 (464)
Q Consensus 324 g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~L~e 403 (464)
+..|.+++|.|+|.|..|..+|+.+... |+ +++.+|+...- . + .. +.+ ......+|.|
T Consensus 187 ~~~L~gktVGIvG~G~IG~~vA~~l~~f-----G~-------~V~~~dr~~~~---~-~-~~---~~~--g~~~~~~l~e 244 (385)
T PRK07574 187 SYDLEGMTVGIVGAGRIGLAVLRRLKPF-----DV-------KLHYTDRHRLP---E-E-VE---QEL--GLTYHVSFDS 244 (385)
T ss_pred ceecCCCEEEEECCCHHHHHHHHHHHhC-----CC-------EEEEECCCCCc---h-h-hH---hhc--CceecCCHHH
Confidence 3458899999999999999999998642 54 57888875320 0 0 00 000 0111246888
Q ss_pred HHhcCCCcEEEeccC----CCCCCCHHHHHHHHcCCCCcEEEEcC
Q 012398 404 AVKAIKPTMLMGTSG----VGKTFTKEVVEAMASFNEKPVIFALS 444 (464)
Q Consensus 404 ~v~~vkptvLIG~S~----~~g~ft~evv~~Ma~~~erPIIFaLS 444 (464)
+++. .|+++=.-- .-+.|+++.+..|. +..++.=.|
T Consensus 245 ll~~--aDvV~l~lPlt~~T~~li~~~~l~~mk---~ga~lIN~a 284 (385)
T PRK07574 245 LVSV--CDVVTIHCPLHPETEHLFDADVLSRMK---RGSYLVNTA 284 (385)
T ss_pred Hhhc--CCEEEEcCCCCHHHHHHhCHHHHhcCC---CCcEEEECC
Confidence 8876 788763321 12578888888885 455666444
No 145
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=89.27 E-value=0.7 Score=45.97 Aligned_cols=101 Identities=14% Similarity=0.170 Sum_probs=57.4
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCC-CccCCch--h-chhhhhhcCCCCCHHHHHh
Q 012398 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSS-RKESLQH--F-KKPWAHEHAPIKSLLDAVK 406 (464)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~-r~~~l~~--~-k~~fa~~~~~~~~L~e~v~ 406 (464)
||.|+|+|..|..+|..|... | .+++++|+..-.... +...... . ............++.++++
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~-----g-------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARN-----G-------HDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALA 70 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhC-----C-------CEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHh
Confidence 799999999999999998753 4 257777774211000 0000000 0 0000000011246778877
Q ss_pred cCCCcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEEcCCCC
Q 012398 407 AIKPTMLMGTSGVGKTFTKEVVEAMASF-NEKPVIFALSNPT 447 (464)
Q Consensus 407 ~vkptvLIG~S~~~g~ft~evv~~Ma~~-~erPIIFaLSNPt 447 (464)
. +|++| ++... ...+++++.++++ .+..+|..++|-.
T Consensus 71 ~--~D~vi-~~v~~-~~~~~v~~~l~~~~~~~~~vi~~~ngv 108 (325)
T PRK00094 71 D--ADLIL-VAVPS-QALREVLKQLKPLLPPDAPIVWATKGI 108 (325)
T ss_pred C--CCEEE-EeCCH-HHHHHHHHHHHhhcCCCCEEEEEeecc
Confidence 6 78777 33333 3678888877754 3456888888754
No 146
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=89.26 E-value=0.88 Score=45.80 Aligned_cols=98 Identities=12% Similarity=0.170 Sum_probs=62.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhhh-cCCCCCHHHHHhcC-
Q 012398 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE-HAPIKSLLDAVKAI- 408 (464)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~-~~~~~~L~e~v~~v- 408 (464)
||.|+|.|..|.++|..|.+. | .++.+.|++ ..+ .. .++.. .....++.|+++..
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~-----g-------~~V~~~dr~----~~~---~~----~l~~~g~~~~~s~~~~~~~~~ 58 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKR-----G-------HDCVGYDHD----QDA---VK----AMKEDRTTGVANLRELSQRLS 58 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHC-----C-------CEEEEEECC----HHH---HH----HHHHcCCcccCCHHHHHhhcC
Confidence 689999999999999988652 4 256666653 111 11 12211 11234666666543
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHcCC-CCcEEEEcCCCCCCCCCCHH
Q 012398 409 KPTMLMGTSGVGKTFTKEVVEAMASFN-EKPVIFALSNPTSQSECTAE 455 (464)
Q Consensus 409 kptvLIG~S~~~g~ft~evv~~Ma~~~-erPIIFaLSNPt~~~E~tpe 455 (464)
++|++| ++.+.+ ..+++++.++.+- +..||+-+||.. ++-+-+
T Consensus 59 ~~dvIi-~~vp~~-~~~~v~~~l~~~l~~g~ivid~st~~--~~~t~~ 102 (298)
T TIGR00872 59 APRVVW-VMVPHG-IVDAVLEELAPTLEKGDIVIDGGNSY--YKDSLR 102 (298)
T ss_pred CCCEEE-EEcCch-HHHHHHHHHHhhCCCCCEEEECCCCC--cccHHH
Confidence 488887 444455 8889998887653 567999999865 554444
No 147
>PLN02306 hydroxypyruvate reductase
Probab=89.17 E-value=3.5 Score=43.76 Aligned_cols=127 Identities=20% Similarity=0.226 Sum_probs=76.2
Q ss_pred CCCceeecCc---cchhHHHHHHHHHHHHH---------------------hCCCCCcceEEEeCcchHHHHHHHHHHHH
Q 012398 296 SSHLVFNDDI---QGTASVVLAGILSALKL---------------------VGGTLADQTFLFLGAGEAGTGIAELIALE 351 (464)
Q Consensus 296 ~~~~~FnDDi---QGTaaV~LAgll~Alk~---------------------~g~~l~d~riv~~GAGsAg~GiA~ll~~a 351 (464)
..|.+.|--- ..+|=-+++-+|+.+|- .|..|.++++.|+|.|..|..+|+++..+
T Consensus 108 ~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~vA~~l~~~ 187 (386)
T PLN02306 108 YGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVEG 187 (386)
T ss_pred CCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCCcCCCCCEEEEECCCHHHHHHHHHHHhc
Confidence 4677776421 22344456666666542 13468899999999999999999998644
Q ss_pred HHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhh--------h--cCCCCCHHHHHhcCCCcEEEecc----
Q 012398 352 MSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAH--------E--HAPIKSLLDAVKAIKPTMLMGTS---- 417 (464)
Q Consensus 352 ~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~--------~--~~~~~~L~e~v~~vkptvLIG~S---- 417 (464)
| |+ +++.+|+..- . ........+.. . .....+|.|+++. .|+++-..
T Consensus 188 f----Gm-------~V~~~d~~~~---~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~--sDiV~lh~Plt~ 248 (386)
T PLN02306 188 F----KM-------NLIYYDLYQS---T---RLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLRE--ADVISLHPVLDK 248 (386)
T ss_pred C----CC-------EEEEECCCCc---h---hhhhhhhhhcccccccccccccccccCCHHHHHhh--CCEEEEeCCCCh
Confidence 3 54 6888887421 0 01100001100 0 0112479999987 89888631
Q ss_pred CCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 012398 418 GVGKTFTKEVVEAMASFNEKPVIFALS 444 (464)
Q Consensus 418 ~~~g~ft~evv~~Ma~~~erPIIFaLS 444 (464)
...|.|+++.++.|. +..++.=.|
T Consensus 249 ~T~~lin~~~l~~MK---~ga~lIN~a 272 (386)
T PLN02306 249 TTYHLINKERLALMK---KEAVLVNAS 272 (386)
T ss_pred hhhhhcCHHHHHhCC---CCeEEEECC
Confidence 223688999999995 444555433
No 148
>PRK07411 hypothetical protein; Validated
Probab=88.94 E-value=0.97 Score=47.70 Aligned_cols=103 Identities=18% Similarity=0.221 Sum_probs=65.7
Q ss_pred CCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCC--Cc-----cCCchhchhhhhh---
Q 012398 325 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSS--RK-----ESLQHFKKPWAHE--- 394 (464)
Q Consensus 325 ~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~--r~-----~~l~~~k~~fa~~--- 394 (464)
++|++.||+|+|+|.-|.-+|+.|+.+ |+ .+|.++|.+=+=..+ |. +++-..|..-|..
T Consensus 34 ~~L~~~~VlivG~GGlG~~va~~La~~-----Gv------g~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~ 102 (390)
T PRK07411 34 KRLKAASVLCIGTGGLGSPLLLYLAAA-----GI------GRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRIL 102 (390)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHH
Confidence 578899999999999999999999875 64 689999986221111 10 1111122111211
Q ss_pred --cCC---------C--CCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEE
Q 012398 395 --HAP---------I--KSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFA 442 (464)
Q Consensus 395 --~~~---------~--~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFa 442 (464)
.+. + .+..+.++. .|++|-+... .=+..+|..++.....|.|++
T Consensus 103 ~~np~v~v~~~~~~~~~~~~~~~~~~--~D~Vvd~~d~--~~~r~~ln~~~~~~~~p~v~~ 159 (390)
T PRK07411 103 EINPYCQVDLYETRLSSENALDILAP--YDVVVDGTDN--FPTRYLVNDACVLLNKPNVYG 159 (390)
T ss_pred HHCCCCeEEEEecccCHHhHHHHHhC--CCEEEECCCC--HHHHHHHHHHHHHcCCCEEEE
Confidence 111 1 134556665 8888887653 236778888888788998864
No 149
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.92 E-value=1.9 Score=44.37 Aligned_cols=94 Identities=20% Similarity=0.260 Sum_probs=70.0
Q ss_pred hHHHHHHHHHHHHHhCCCCCcceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchh
Q 012398 309 ASVVLAGILSALKLVGGTLADQTFLFLGAG-EAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHF 387 (464)
Q Consensus 309 aaV~LAgll~Alk~~g~~l~d~riv~~GAG-sAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~ 387 (464)
.-+|.+|++.=|+-.+.+++.+++||+|.+ ..|.-+|.||.. .|.+. ...+.+|.|+
T Consensus 137 ~PcTp~av~~lL~~~~i~l~GK~vvViGrS~iVGkPla~lL~~-----~~~~~---~aTVtvchs~-------------- 194 (293)
T PRK14185 137 VSATPNGILELLKRYHIETSGKKCVVLGRSNIVGKPMAQLMMQ-----KAYPG---DCTVTVCHSR-------------- 194 (293)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHc-----CCCCC---CCEEEEecCC--------------
Confidence 456788888999999999999999999986 567888887754 23210 0124444442
Q ss_pred chhhhhhcCCCCCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEE
Q 012398 388 KKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFA 442 (464)
Q Consensus 388 k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFa 442 (464)
..+|.+.+++ +|++|-..+.++.+++|||+ +..+|+=
T Consensus 195 ----------T~nl~~~~~~--ADIvIsAvGkp~~i~~~~vk------~gavVID 231 (293)
T PRK14185 195 ----------SKNLKKECLE--ADIIIAALGQPEFVKADMVK------EGAVVID 231 (293)
T ss_pred ----------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC------CCCEEEE
Confidence 1368888887 99999999999999999998 5556653
No 150
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=88.81 E-value=0.43 Score=48.11 Aligned_cols=32 Identities=25% Similarity=0.330 Sum_probs=25.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
.+|.|+|+|..|.++|..+... |. +++++|+.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~-----G~-------~V~v~d~~ 34 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARA-----GH-------EVRLWDAD 34 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHC-----CC-------eeEEEeCC
Confidence 3799999999999999988763 53 57778764
No 151
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=88.77 E-value=1.2 Score=46.96 Aligned_cols=103 Identities=16% Similarity=0.215 Sum_probs=64.5
Q ss_pred CCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCC-------ccCCchhchhhhhh---
Q 012398 325 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSR-------KESLQHFKKPWAHE--- 394 (464)
Q Consensus 325 ~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r-------~~~l~~~k~~fa~~--- 394 (464)
++|++.||+|+|+|..|.-+|+.|+.+ |+ .+|.++|.+=+=..+- .+++-..|..-++.
T Consensus 38 ~~L~~~~VlviG~GGlGs~va~~La~~-----Gv------g~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~ 106 (392)
T PRK07878 38 KRLKNARVLVIGAGGLGSPTLLYLAAA-----GV------GTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIV 106 (392)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHHHc-----CC------CeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHH
Confidence 678899999999999999999999864 64 6899999762211110 01121122222211
Q ss_pred --cC---------CC--CCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEE
Q 012398 395 --HA---------PI--KSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFA 442 (464)
Q Consensus 395 --~~---------~~--~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFa 442 (464)
.+ .+ .++.+.++. .|++|-++.- .=++-++-.++.....|.|++
T Consensus 107 ~~np~v~i~~~~~~i~~~~~~~~~~~--~D~Vvd~~d~--~~~r~~ln~~~~~~~~p~v~~ 163 (392)
T PRK07878 107 EINPLVNVRLHEFRLDPSNAVELFSQ--YDLILDGTDN--FATRYLVNDAAVLAGKPYVWG 163 (392)
T ss_pred HhCCCcEEEEEeccCChhHHHHHHhc--CCEEEECCCC--HHHHHHHHHHHHHcCCCEEEE
Confidence 01 11 135566665 8999976642 225556777877778998774
No 152
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=88.73 E-value=1.2 Score=46.14 Aligned_cols=103 Identities=18% Similarity=0.317 Sum_probs=66.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc-CcccCCCccCCchhchhhhhhcCCC---CCHHHHH
Q 012398 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK-GLIVSSRKESLQHFKKPWAHEHAPI---KSLLDAV 405 (464)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~-GLl~~~r~~~l~~~k~~fa~~~~~~---~~L~e~v 405 (464)
.||+|+|||..|...|-.|+. .++. +.+.++|.. +...-...| |.+. ..+......+ ++ .+.+
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~-----~~~~-----~el~LiDi~~~~~~G~a~D-L~~~-~~~~~~~~~i~~~~~-y~~~ 67 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLL-----QGLG-----SELVLIDINEEKAEGVALD-LSHA-AAPLGSDVKITGDGD-YEDL 67 (313)
T ss_pred CeEEEECCChHHHHHHHHHhc-----cccc-----ceEEEEEcccccccchhcc-hhhc-chhccCceEEecCCC-hhhh
Confidence 389999999999999998843 3442 479999987 222111111 3222 1121111111 23 4557
Q ss_pred hcCCCcEEEecc---CCCC-----------CCCHHHHHHHHcCCCCcEEEEcCCCC
Q 012398 406 KAIKPTMLMGTS---GVGK-----------TFTKEVVEAMASFNEKPVIFALSNPT 447 (464)
Q Consensus 406 ~~vkptvLIG~S---~~~g-----------~ft~evv~~Ma~~~erPIIFaLSNPt 447 (464)
++ +|+.|=+. ..|| .+-+++.+.+++.+.+.||+-.|||.
T Consensus 68 ~~--aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNPv 121 (313)
T COG0039 68 KG--ADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNPV 121 (313)
T ss_pred cC--CCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecCcH
Confidence 76 89887333 3344 24578899999999999999999998
No 153
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=88.65 E-value=4 Score=43.44 Aligned_cols=117 Identities=16% Similarity=0.184 Sum_probs=67.7
Q ss_pred HHHHHHHHHHhcCCCeeeeeecCCCccHHHHHHHHcCCCceeecCccchhHHHHHHHHHHHHHhCCCCCcceEEEeCcch
Q 012398 260 LQEFMTAVKQNYGEKVLIQFEDFANHNAFELLSKYSSSHLVFNDDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGE 339 (464)
Q Consensus 260 idefv~av~~~fGp~~lIq~EDf~~~~af~iL~ryr~~~~~FnDDiQGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGs 339 (464)
.++|++++.+.+|- | .+.+-+.+++.+ +-+..++.-..+.|+..|++|+|.+.
T Consensus 248 T~~~L~~la~~~g~-------~--~~~~~~~~~~er------------------~~~~~~l~~~~~~l~Gkrvai~g~~~ 300 (427)
T PRK02842 248 TRAWLEAAAAAFGI-------D--PDGLEEREAPAW------------------ERARKALEPYRELLRGKRVFFLPDSQ 300 (427)
T ss_pred HHHHHHHHHHHhCc-------C--HhHHHHHHHHHH------------------HHHHHHHHHhhhhcCCcEEEEECCch
Confidence 68999999998863 1 111222233332 33455666667778899999999998
Q ss_pred HHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhhh-----cCCCCCHHHHHhcCCCcEEE
Q 012398 340 AGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE-----HAPIKSLLDAVKAIKPTMLM 414 (464)
Q Consensus 340 Ag~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~-----~~~~~~L~e~v~~vkptvLI 414 (464)
-.+++++.|.+. .|+.. ..+-+. ..++ +.+.+.-+.+... ..+...+.+.|+..+||.||
T Consensus 301 ~~~~la~~L~ee----lGm~~-------v~v~t~---~~~~-~~~~~~~~~l~~~~~v~~~~D~~~l~~~i~~~~pDlli 365 (427)
T PRK02842 301 LEIPLARFLSRE----CGMEL-------VEVGTP---YLNR-RFLAAELALLPDGVRIVEGQDVERQLDRIRALRPDLVV 365 (427)
T ss_pred hHHHHHHHHHHh----CCCEE-------EEeCCC---CCCH-HHHHHHHHhccCCCEEEECCCHHHHHHHHHHcCCCEEE
Confidence 999999998763 37632 212111 0111 1111111111111 11223458889999999999
Q ss_pred eccC
Q 012398 415 GTSG 418 (464)
Q Consensus 415 G~S~ 418 (464)
|-|.
T Consensus 366 g~~~ 369 (427)
T PRK02842 366 CGLG 369 (427)
T ss_pred ccCc
Confidence 9874
No 154
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.52 E-value=2.1 Score=43.85 Aligned_cols=92 Identities=20% Similarity=0.276 Sum_probs=71.2
Q ss_pred chhHHHHHHHHHHHHHhCCCCCcceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCc
Q 012398 307 GTASVVLAGILSALKLVGGTLADQTFLFLGAG-EAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQ 385 (464)
Q Consensus 307 GTaaV~LAgll~Alk~~g~~l~d~riv~~GAG-sAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~ 385 (464)
+-.-+|-.|++.=|+-.+.+++.+++||+|.+ ..|.-+|.||.. .|. .+.+|.|+
T Consensus 134 ~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~a-------tVtichs~------------ 189 (282)
T PRK14169 134 TVVASTPYGIMALLDAYDIDVAGKRVVIVGRSNIVGRPLAGLMVN-----HDA-------TVTIAHSK------------ 189 (282)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CCC-------EEEEECCC------------
Confidence 34567888889999999999999999999975 578888888764 242 35555442
Q ss_pred hhchhhhhhcCCCCCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEE
Q 012398 386 HFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFA 442 (464)
Q Consensus 386 ~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFa 442 (464)
..+|.+.+++ +|++|-..+.++.|+.|+|+ +..||+=
T Consensus 190 ------------T~~l~~~~~~--ADIvI~AvG~p~~i~~~~vk------~GavVID 226 (282)
T PRK14169 190 ------------TRNLKQLTKE--ADILVVAVGVPHFIGADAVK------PGAVVID 226 (282)
T ss_pred ------------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC------CCcEEEE
Confidence 1248888887 99999999999999999998 4557653
No 155
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=88.47 E-value=0.16 Score=46.81 Aligned_cols=90 Identities=19% Similarity=0.346 Sum_probs=50.3
Q ss_pred CCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccC-ccc-----------CCCccCCchhchhhhhh
Q 012398 327 LADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKG-LIV-----------SSRKESLQHFKKPWAHE 394 (464)
Q Consensus 327 l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~G-Ll~-----------~~r~~~l~~~k~~fa~~ 394 (464)
+.-.+|||.|+|.+|.|.++++... |. ++...|..= .+. ....+.+.. +.|++.
T Consensus 18 ~~p~~vvv~G~G~vg~gA~~~~~~l-----Ga-------~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~ 83 (168)
T PF01262_consen 18 VPPAKVVVTGAGRVGQGAAEIAKGL-----GA-------EVVVPDERPERLRQLESLGAYFIEVDYEDHLER--KDFDKA 83 (168)
T ss_dssp E-T-EEEEESTSHHHHHHHHHHHHT-----T--------EEEEEESSHHHHHHHHHTTTEESEETTTTTTTS--B-CCHH
T ss_pred CCCeEEEEECCCHHHHHHHHHHhHC-----CC-------EEEeccCCHHHHHhhhcccCceEEEcccccccc--cccchh
Confidence 5568999999999999999988653 53 344455420 000 000000000 002221
Q ss_pred ----cCC--CCCHHHHHhcCCCcEEEecc-----CCCCCCCHHHHHHHH
Q 012398 395 ----HAP--IKSLLDAVKAIKPTMLMGTS-----GVGKTFTKEVVEAMA 432 (464)
Q Consensus 395 ----~~~--~~~L~e~v~~vkptvLIG~S-----~~~g~ft~evv~~Ma 432 (464)
.+. ...|.+.++. .|++|+.. ..|-+||+++++.|.
T Consensus 84 ~~~~~~~~~~~~f~~~i~~--~d~vI~~~~~~~~~~P~lvt~~~~~~m~ 130 (168)
T PF01262_consen 84 DYYEHPESYESNFAEFIAP--ADIVIGNGLYWGKRAPRLVTEEMVKSMK 130 (168)
T ss_dssp HCHHHCCHHHHHHHHHHHH---SEEEEHHHBTTSS---SBEHHHHHTSS
T ss_pred hhhHHHHHhHHHHHHHHhh--CcEEeeecccCCCCCCEEEEhHHhhccC
Confidence 111 1368888987 89999753 334589999999996
No 156
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.41 E-value=0.46 Score=47.30 Aligned_cols=32 Identities=38% Similarity=0.541 Sum_probs=25.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
+||.|+|+|..|.+||..+..+ |. +++++|.+
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~-----G~-------~V~~~d~~ 33 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVS-----GF-------QTTLVDIK 33 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhC-----CC-------cEEEEeCC
Confidence 4799999999999999988753 43 57888874
No 157
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=88.28 E-value=0.24 Score=46.57 Aligned_cols=31 Identities=35% Similarity=0.499 Sum_probs=24.1
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
||.|+|||..|.|||-+++.+ |. ++.++|.+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~-----G~-------~V~l~d~~ 31 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA-----GY-------EVTLYDRS 31 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT-----TS-------EEEEE-SS
T ss_pred CEEEEcCCHHHHHHHHHHHhC-----CC-------cEEEEECC
Confidence 689999999999999999764 54 68888874
No 158
>PRK13243 glyoxylate reductase; Reviewed
Probab=88.19 E-value=5.6 Score=41.07 Aligned_cols=92 Identities=13% Similarity=0.144 Sum_probs=55.0
Q ss_pred CCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhhhcCCCCCHHH
Q 012398 324 GGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLD 403 (464)
Q Consensus 324 g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~L~e 403 (464)
|..|.+++|.|+|.|..|..+|+.+... |+ +++.+|+.. . . .. ...+. -...+|.|
T Consensus 145 g~~L~gktvgIiG~G~IG~~vA~~l~~~-----G~-------~V~~~d~~~----~--~-~~--~~~~~---~~~~~l~e 200 (333)
T PRK13243 145 GYDVYGKTIGIIGFGRIGQAVARRAKGF-----GM-------RILYYSRTR----K--P-EA--EKELG---AEYRPLEE 200 (333)
T ss_pred ccCCCCCEEEEECcCHHHHHHHHHHHHC-----CC-------EEEEECCCC----C--h-hh--HHHcC---CEecCHHH
Confidence 4568999999999999999999998642 54 577888742 1 1 00 00110 01235777
Q ss_pred HHhcCCCcEEEeccC----CCCCCCHHHHHHHHcCCCCcEEEEcC
Q 012398 404 AVKAIKPTMLMGTSG----VGKTFTKEVVEAMASFNEKPVIFALS 444 (464)
Q Consensus 404 ~v~~vkptvLIG~S~----~~g~ft~evv~~Ma~~~erPIIFaLS 444 (464)
+++. .|+++=.-- .-+.|.++.+..|. +..++.=.|
T Consensus 201 ll~~--aDiV~l~lP~t~~T~~~i~~~~~~~mk---~ga~lIN~a 240 (333)
T PRK13243 201 LLRE--SDFVSLHVPLTKETYHMINEERLKLMK---PTAILVNTA 240 (333)
T ss_pred HHhh--CCEEEEeCCCChHHhhccCHHHHhcCC---CCeEEEECc
Confidence 7665 676663221 12466666666664 445555443
No 159
>PRK06141 ornithine cyclodeaminase; Validated
Probab=88.09 E-value=2.5 Score=43.08 Aligned_cols=105 Identities=12% Similarity=0.130 Sum_probs=65.9
Q ss_pred CCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhhhc---CCCCCHHH
Q 012398 327 LADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEH---APIKSLLD 403 (464)
Q Consensus 327 l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~~---~~~~~L~e 403 (464)
....+++|+|+|..|..+++.+... .+ .++|+++|+. .++ ...+...+.+.. ....++.+
T Consensus 123 ~~~~~v~iiG~G~~a~~~~~al~~~----~~------~~~V~V~~Rs----~~~---a~~~a~~~~~~g~~~~~~~~~~~ 185 (314)
T PRK06141 123 KDASRLLVVGTGRLASLLALAHASV----RP------IKQVRVWGRD----PAK---AEALAAELRAQGFDAEVVTDLEA 185 (314)
T ss_pred CCCceEEEECCcHHHHHHHHHHHhc----CC------CCEEEEEcCC----HHH---HHHHHHHHHhcCCceEEeCCHHH
Confidence 3568999999999999999877542 13 3578888763 222 222222332111 12368999
Q ss_pred HHhcCCCcEEEeccCCC-CCCCHHHHHHHHcCCCCcEEEEc-CCCCCCCCCCHHH
Q 012398 404 AVKAIKPTMLMGTSGVG-KTFTKEVVEAMASFNEKPVIFAL-SNPTSQSECTAEE 456 (464)
Q Consensus 404 ~v~~vkptvLIG~S~~~-g~ft~evv~~Ma~~~erPIIFaL-SNPt~~~E~tped 456 (464)
++++ +|++|-++..+ .+|+.++++. .-.|-+. |.+..+-|+.++-
T Consensus 186 av~~--aDIVi~aT~s~~pvl~~~~l~~------g~~i~~ig~~~~~~~El~~~~ 232 (314)
T PRK06141 186 AVRQ--ADIISCATLSTEPLVRGEWLKP------GTHLDLVGNFTPDMRECDDEA 232 (314)
T ss_pred HHhc--CCEEEEeeCCCCCEecHHHcCC------CCEEEeeCCCCcccccCCHHH
Confidence 9986 99998776543 3577777642 2244444 5566778888753
No 160
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.04 E-value=2.2 Score=43.77 Aligned_cols=91 Identities=24% Similarity=0.325 Sum_probs=70.6
Q ss_pred hHHHHHHHHHHHHHhCCCCCcceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchh
Q 012398 309 ASVVLAGILSALKLVGGTLADQTFLFLGAG-EAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHF 387 (464)
Q Consensus 309 aaV~LAgll~Alk~~g~~l~d~riv~~GAG-sAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~ 387 (464)
.-+|-.|++.=|+-.|.+++..++|++|.+ ..|.-+|.||.. .|. .+.+|.|+
T Consensus 135 ~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~a-------TVtichs~-------------- 188 (287)
T PRK14173 135 EPCTPAGVVRLLKHYGIPLAGKEVVVVGRSNIVGKPLAALLLR-----EDA-------TVTLAHSK-------------- 188 (287)
T ss_pred CCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHH-----CCC-------EEEEeCCC--------------
Confidence 456788889999999999999999999975 678888888864 232 35555542
Q ss_pred chhhhhhcCCCCCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEc
Q 012398 388 KKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFAL 443 (464)
Q Consensus 388 k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaL 443 (464)
..+|.+.+++ +|++|-..+.++.+++|+|+ +..||+=-
T Consensus 189 ----------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~vk------~GavVIDV 226 (287)
T PRK14173 189 ----------TQDLPAVTRR--ADVLVVAVGRPHLITPEMVR------PGAVVVDV 226 (287)
T ss_pred ----------CCCHHHHHhh--CCEEEEecCCcCccCHHHcC------CCCEEEEc
Confidence 1247888887 99999999999999999997 45566543
No 161
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=87.75 E-value=0.85 Score=46.16 Aligned_cols=95 Identities=15% Similarity=0.120 Sum_probs=54.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhch--hhhhh------cCCCCCH
Q 012398 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKK--PWAHE------HAPIKSL 401 (464)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~--~fa~~------~~~~~~L 401 (464)
.||.|+|+|+.|.++|..|..+ | .++.++|+.. ++.+.+....+ .+... .....++
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~-----G-------~~V~~~~r~~----~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~ 68 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASK-----G-------VPVRLWARRP----EFAAALAAERENREYLPGVALPAELYPTADP 68 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHC-----C-------CeEEEEeCCH----HHHHHHHHhCcccccCCCCcCCCCeEEeCCH
Confidence 4799999999999999998763 4 2477777631 11011111100 00000 0112478
Q ss_pred HHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCC
Q 012398 402 LDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPT 447 (464)
Q Consensus 402 ~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaLSNPt 447 (464)
.|+++. .|++|= +.+. ...+++++.+. +..+|+-++|..
T Consensus 69 ~e~~~~--aD~Vi~-~v~~-~~~~~v~~~l~---~~~~vi~~~~Gi 107 (328)
T PRK14618 69 EEALAG--ADFAVV-AVPS-KALRETLAGLP---RALGYVSCAKGL 107 (328)
T ss_pred HHHHcC--CCEEEE-ECch-HHHHHHHHhcC---cCCEEEEEeecc
Confidence 888875 787763 3222 24577777765 344666778864
No 162
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=87.73 E-value=1.6 Score=42.90 Aligned_cols=100 Identities=13% Similarity=0.143 Sum_probs=53.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCC-CccCCchhchhhhhhcCCCCCHHHHHhcCC
Q 012398 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSS-RKESLQHFKKPWAHEHAPIKSLLDAVKAIK 409 (464)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~-r~~~l~~~k~~fa~~~~~~~~L~e~v~~vk 409 (464)
||.|+|+|+.|..+|..|..+ | .+++++|+++=-... +...+.-....+........++.++ + +
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~-----g-------~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~--~ 66 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQA-----G-------HDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-G--P 66 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-C--C
Confidence 799999999999999988653 4 368888874211000 0000100000000000112345553 3 4
Q ss_pred CcEEEeccCCCCCCCHHHHHHHHcCC-CCcEEEEcCCCC
Q 012398 410 PTMLMGTSGVGKTFTKEVVEAMASFN-EKPVIFALSNPT 447 (464)
Q Consensus 410 ptvLIG~S~~~g~ft~evv~~Ma~~~-erPIIFaLSNPt 447 (464)
+|++| ++... .-++++++.+++.. ++-+|+.+.|..
T Consensus 67 ~d~vi-la~k~-~~~~~~~~~l~~~l~~~~~iv~~~nG~ 103 (304)
T PRK06522 67 QDLVI-LAVKA-YQLPAALPSLAPLLGPDTPVLFLQNGV 103 (304)
T ss_pred CCEEE-Eeccc-ccHHHHHHHHhhhcCCCCEEEEecCCC
Confidence 78777 44433 34688888887643 333556688865
No 163
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.69 E-value=2.4 Score=43.44 Aligned_cols=94 Identities=19% Similarity=0.251 Sum_probs=71.7
Q ss_pred cchhHHHHHHHHHHHHHhCCCCCcceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCC
Q 012398 306 QGTASVVLAGILSALKLVGGTLADQTFLFLGAG-EAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESL 384 (464)
Q Consensus 306 QGTaaV~LAgll~Alk~~g~~l~d~riv~~GAG-sAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l 384 (464)
.+-.-+|-.|++.=|+-.|.+|++.++||+|.+ ..|.-+|.||.. .|. .+.+|+++
T Consensus 135 ~~~~PcTp~aii~lL~~y~i~l~Gk~vvViGrS~~VGkPla~lL~~-----~~A-------TVt~chs~----------- 191 (282)
T PRK14180 135 KCLESCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLN-----AKA-------TVTTCHRF----------- 191 (282)
T ss_pred CCcCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEEcCC-----------
Confidence 344567888999999999999999999999986 578888888854 242 35555542
Q ss_pred chhchhhhhhcCCCCCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEc
Q 012398 385 QHFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFAL 443 (464)
Q Consensus 385 ~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaL 443 (464)
.++|.+.+++ +|++|-..+.++.|++++|+ +..+|.=-
T Consensus 192 -------------T~dl~~~~k~--ADIvIsAvGkp~~i~~~~vk------~gavVIDv 229 (282)
T PRK14180 192 -------------TTDLKSHTTK--ADILIVAVGKPNFITADMVK------EGAVVIDV 229 (282)
T ss_pred -------------CCCHHHHhhh--cCEEEEccCCcCcCCHHHcC------CCcEEEEe
Confidence 1246777776 99999999999999999998 55576533
No 164
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=87.63 E-value=1.3 Score=43.83 Aligned_cols=101 Identities=12% Similarity=0.096 Sum_probs=56.2
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCC-CccCCch--hchhhhhhcCCCCCHHHHHhc
Q 012398 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSS-RKESLQH--FKKPWAHEHAPIKSLLDAVKA 407 (464)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~-r~~~l~~--~k~~fa~~~~~~~~L~e~v~~ 407 (464)
||.|+|+|+.|..+|..|..+ | .+++++++ +--... +...+.- .....-.......++.++++.
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~-----g-------~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEA-----G-------RDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGP 68 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHC-----C-------CceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCC
Confidence 799999999999999988653 4 35777777 210000 0000100 000000000112456665554
Q ss_pred CCCcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEEcCCCCC
Q 012398 408 IKPTMLMGTSGVGKTFTKEVVEAMASF-NEKPVIFALSNPTS 448 (464)
Q Consensus 408 vkptvLIG~S~~~g~ft~evv~~Ma~~-~erPIIFaLSNPt~ 448 (464)
+|++|=+.. . ...+++++.++++ .++.+|+.+.|...
T Consensus 69 --~d~vilavk-~-~~~~~~~~~l~~~~~~~~~ii~~~nG~~ 106 (305)
T PRK12921 69 --FDLVILAVK-A-YQLDAAIPDLKPLVGEDTVIIPLQNGIG 106 (305)
T ss_pred --CCEEEEEec-c-cCHHHHHHHHHhhcCCCCEEEEeeCCCC
Confidence 786663332 2 3568888888763 34567777999863
No 165
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.60 E-value=2.8 Score=43.08 Aligned_cols=98 Identities=22% Similarity=0.343 Sum_probs=72.3
Q ss_pred chhHHHHHHHHHHHHHhCCCCCcceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCc
Q 012398 307 GTASVVLAGILSALKLVGGTLADQTFLFLGAG-EAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQ 385 (464)
Q Consensus 307 GTaaV~LAgll~Alk~~g~~l~d~riv~~GAG-sAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~ 385 (464)
+-.-+|..|++.=|+-.|.+++.+++||+|-+ ..|.-+|.||.. .|.+. ...+.+|.|+
T Consensus 131 ~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~~~~---~AtVtvchs~------------ 190 (287)
T PRK14181 131 GFIPCTPAGIIELLKYYEIPLHGRHVAIVGRSNIVGKPLAALLMQ-----KHPDT---NATVTLLHSQ------------ 190 (287)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHh-----CcCCC---CCEEEEeCCC------------
Confidence 44567888889999999999999999999976 567888887754 22110 1134444332
Q ss_pred hhchhhhhhcCCCCCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 012398 386 HFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALS 444 (464)
Q Consensus 386 ~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaLS 444 (464)
..+|.+.++. +|++|-..+.++.+++|||+ +..||+=-.
T Consensus 191 ------------T~~l~~~~~~--ADIvV~AvG~p~~i~~~~ik------~GavVIDvG 229 (287)
T PRK14181 191 ------------SENLTEILKT--ADIIIAAIGVPLFIKEEMIA------EKAVIVDVG 229 (287)
T ss_pred ------------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC------CCCEEEEec
Confidence 1358888887 99999999999999999998 566775443
No 166
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=87.59 E-value=1.3 Score=44.79 Aligned_cols=48 Identities=15% Similarity=0.070 Sum_probs=36.5
Q ss_pred HHHHHHHHHhCCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 314 AGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 314 Agll~Alk~~g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
.|++.+++-.+.+. +.+++++|||-|+-+|+-.|.+ .|. ++|+++++.
T Consensus 108 ~Gf~~~L~~~~~~~-~~~vlilGaGGaarAi~~aL~~-----~g~------~~i~i~nR~ 155 (272)
T PRK12550 108 IAIAKLLASYQVPP-DLVVALRGSGGMAKAVAAALRD-----AGF------TDGTIVARN 155 (272)
T ss_pred HHHHHHHHhcCCCC-CCeEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 46677777666653 4599999999999999887764 354 579999884
No 167
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.45 E-value=1.6 Score=43.80 Aligned_cols=31 Identities=39% Similarity=0.652 Sum_probs=25.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcc
Q 012398 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDS 372 (464)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~ 372 (464)
+||.|+|+|..|.+||..+..+ |. +++++|.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~-----g~-------~V~~~d~ 35 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARK-----GL-------QVVLIDV 35 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhC-----CC-------eEEEEEC
Confidence 4799999999999999988653 53 5888885
No 168
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=87.41 E-value=2.3 Score=45.11 Aligned_cols=91 Identities=13% Similarity=0.201 Sum_probs=70.1
Q ss_pred hhHHHHHHHHHHHHHhCCCCCcceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCch
Q 012398 308 TASVVLAGILSALKLVGGTLADQTFLFLGAG-EAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQH 386 (464)
Q Consensus 308 TaaV~LAgll~Alk~~g~~l~d~riv~~GAG-sAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~ 386 (464)
-.-+|-+|++.-|+-.+.+++.+++||+|-+ -.|.-+|.||.. .|. .+.+|.|+
T Consensus 210 f~PCTp~avielL~~y~i~l~GK~vvVIGRS~iVGkPLa~LL~~-----~~A-------TVTicHs~------------- 264 (364)
T PLN02616 210 FVPCTPKGCIELLHRYNVEIKGKRAVVIGRSNIVGMPAALLLQR-----EDA-------TVSIVHSR------------- 264 (364)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccccHHHHHHHHH-----CCC-------eEEEeCCC-------------
Confidence 3456778889999999999999999999975 567778877754 232 35566442
Q ss_pred hchhhhhhcCCCCCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEE
Q 012398 387 FKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFA 442 (464)
Q Consensus 387 ~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFa 442 (464)
.++|.+.+++ +|++|-..+.++.++.|||+ +..||.=
T Consensus 265 -----------T~nl~~~~r~--ADIVIsAvGkp~~i~~d~vK------~GAvVID 301 (364)
T PLN02616 265 -----------TKNPEEITRE--ADIIISAVGQPNMVRGSWIK------PGAVVID 301 (364)
T ss_pred -----------CCCHHHHHhh--CCEEEEcCCCcCcCCHHHcC------CCCEEEe
Confidence 1358888887 99999999999999999998 4556653
No 169
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=87.16 E-value=1 Score=47.20 Aligned_cols=105 Identities=25% Similarity=0.396 Sum_probs=70.4
Q ss_pred CCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhhh----cCCCCCHH
Q 012398 327 LADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE----HAPIKSLL 402 (464)
Q Consensus 327 l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~----~~~~~~L~ 402 (464)
...-||+|+|.|-+|+--|++.+ |+. .++.+.|.+ .+| |....-.|..+ ......++
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~-------glg-----A~Vtild~n----~~r---l~~ldd~f~~rv~~~~st~~~ie 226 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAI-------GLG-----ADVTILDLN----IDR---LRQLDDLFGGRVHTLYSTPSNIE 226 (371)
T ss_pred CCCccEEEECCccccchHHHHHh-------ccC-----CeeEEEecC----HHH---HhhhhHhhCceeEEEEcCHHHHH
Confidence 66789999999999999999764 443 357777763 333 33333334432 12224699
Q ss_pred HHHhcCCCcEEEec-----cCCCCCCCHHHHHHHHcCCCCcEE----------EEcCCCCCCCCCCHH
Q 012398 403 DAVKAIKPTMLMGT-----SGVGKTFTKEVVEAMASFNEKPVI----------FALSNPTSQSECTAE 455 (464)
Q Consensus 403 e~v~~vkptvLIG~-----S~~~g~ft~evv~~Ma~~~erPII----------FaLSNPt~~~E~tpe 455 (464)
|++++ +|++||. +..|.+.|+|+++.|.+ ..+| |-=|.||+..+-|.+
T Consensus 227 e~v~~--aDlvIgaVLIpgakaPkLvt~e~vk~Mkp---GsVivDVAiDqGGc~Et~~~TTh~~PtY~ 289 (371)
T COG0686 227 EAVKK--ADLVIGAVLIPGAKAPKLVTREMVKQMKP---GSVIVDVAIDQGGCFETSHPTTHDDPTYE 289 (371)
T ss_pred HHhhh--ccEEEEEEEecCCCCceehhHHHHHhcCC---CcEEEEEEEcCCCceeccccccCCCCcee
Confidence 99987 9999987 34456899999999963 3343 455677766665543
No 170
>PRK06436 glycerate dehydrogenase; Provisional
Probab=87.13 E-value=5.7 Score=40.73 Aligned_cols=38 Identities=21% Similarity=0.255 Sum_probs=30.9
Q ss_pred CCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 324 GGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 324 g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
+..|.+++|.|+|-|..|..+|+++. + .|+ +++.+|+.
T Consensus 117 ~~~L~gktvgIiG~G~IG~~vA~~l~-a----fG~-------~V~~~~r~ 154 (303)
T PRK06436 117 TKLLYNKSLGILGYGGIGRRVALLAK-A----FGM-------NIYAYTRS 154 (303)
T ss_pred CCCCCCCEEEEECcCHHHHHHHHHHH-H----CCC-------EEEEECCC
Confidence 45799999999999999999998664 3 264 58888875
No 171
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.08 E-value=2.9 Score=43.17 Aligned_cols=96 Identities=14% Similarity=0.252 Sum_probs=71.1
Q ss_pred hHHHHHHHHHHHHHhCCCCCcceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchh
Q 012398 309 ASVVLAGILSALKLVGGTLADQTFLFLGAG-EAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHF 387 (464)
Q Consensus 309 aaV~LAgll~Alk~~g~~l~d~riv~~GAG-sAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~ 387 (464)
.-+|-.|++.=|+-.+.+++.+++||+|.+ ..|.-+|.||... |.. ....+.+|.|+
T Consensus 137 ~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~-----~~~---~~aTVtvchs~-------------- 194 (297)
T PRK14167 137 KPCTPHGIQKLLAAAGVDTEGADVVVVGRSDIVGKPMANLLIQK-----ADG---GNATVTVCHSR-------------- 194 (297)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCcccHHHHHHHHhcC-----ccC---CCCEEEEeCCC--------------
Confidence 456888889999999999999999999986 5688888887531 110 00134444432
Q ss_pred chhhhhhcCCCCCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 012398 388 KKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALS 444 (464)
Q Consensus 388 k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaLS 444 (464)
..+|.+.+++ +|++|...+.++.++.|||+ +..||+=-.
T Consensus 195 ----------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik------~gaiVIDvG 233 (297)
T PRK14167 195 ----------TDDLAAKTRR--ADIVVAAAGVPELIDGSMLS------EGATVIDVG 233 (297)
T ss_pred ----------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC------CCCEEEEcc
Confidence 1358888887 99999999999999999998 566776554
No 172
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=87.08 E-value=6.2 Score=40.36 Aligned_cols=115 Identities=16% Similarity=0.227 Sum_probs=69.2
Q ss_pred CCCceeecCc---cchhHHHHHHHHHHHHHh------------------------CCCCCcceEEEeCcchHHHHHHHHH
Q 012398 296 SSHLVFNDDI---QGTASVVLAGILSALKLV------------------------GGTLADQTFLFLGAGEAGTGIAELI 348 (464)
Q Consensus 296 ~~~~~FnDDi---QGTaaV~LAgll~Alk~~------------------------g~~l~d~riv~~GAGsAg~GiA~ll 348 (464)
..|.+.|--- ..+|=-+++-+|+..|-. +..|.++++.|+|-|..|-.+|+++
T Consensus 85 ~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG~G~IG~~vA~~~ 164 (311)
T PRK08410 85 KGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGTIGKRVAKIA 164 (311)
T ss_pred CCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEECCCHHHHHHHHHH
Confidence 4555555321 235555677777766532 2468999999999999999999988
Q ss_pred HHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhhhcCCCCCHHHHHhcCCCcEEEec----cCCCCCCC
Q 012398 349 ALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIKPTMLMGT----SGVGKTFT 424 (464)
Q Consensus 349 ~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~----S~~~g~ft 424 (464)
.. + |+ +|+.+|+.+- .. + ..| ...+|.|+++. .|+++=. ...-+.|+
T Consensus 165 ~~-f----gm-------~V~~~d~~~~---~~-~------~~~-----~~~~l~ell~~--sDvv~lh~Plt~~T~~li~ 215 (311)
T PRK08410 165 QA-F----GA-------KVVYYSTSGK---NK-N------EEY-----ERVSLEELLKT--SDIISIHAPLNEKTKNLIA 215 (311)
T ss_pred hh-c----CC-------EEEEECCCcc---cc-c------cCc-----eeecHHHHhhc--CCEEEEeCCCCchhhcccC
Confidence 53 2 64 6888888531 10 0 001 12357777765 6766522 11124677
Q ss_pred HHHHHHHHcCCCCcEEEE
Q 012398 425 KEVVEAMASFNEKPVIFA 442 (464)
Q Consensus 425 ~evv~~Ma~~~erPIIFa 442 (464)
++.++.|. +..++.=
T Consensus 216 ~~~~~~Mk---~~a~lIN 230 (311)
T PRK08410 216 YKELKLLK---DGAILIN 230 (311)
T ss_pred HHHHHhCC---CCeEEEE
Confidence 77777774 4445543
No 173
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=87.03 E-value=0.34 Score=52.94 Aligned_cols=37 Identities=24% Similarity=0.230 Sum_probs=28.2
Q ss_pred CCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCe
Q 012398 327 LADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKK 366 (464)
Q Consensus 327 l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~ 366 (464)
.+..+|+|+|||.||+..|++|.+... .+..-|||.|
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~---~V~VLEARdR 49 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGF---DVLVLEARDR 49 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCC---ceEEEeccCC
Confidence 345689999999999999999998632 2455566664
No 174
>PRK07680 late competence protein ComER; Validated
Probab=86.99 E-value=1.6 Score=43.20 Aligned_cols=97 Identities=12% Similarity=0.231 Sum_probs=53.6
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhhhcCCCCCHHHHHhcCCC
Q 012398 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIKP 410 (464)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkp 410 (464)
+|.|+|+|..|..+|..|... |.- ...+++++|++ .. ........|. ......+..++++. +
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~-----g~~---~~~~v~v~~r~----~~---~~~~~~~~~~-g~~~~~~~~~~~~~--a 63 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLES-----GAV---KPSQLTITNRT----PA---KAYHIKERYP-GIHVAKTIEEVISQ--S 63 (273)
T ss_pred EEEEECccHHHHHHHHHHHHC-----CCC---CcceEEEECCC----HH---HHHHHHHHcC-CeEEECCHHHHHHh--C
Confidence 689999999999999988653 420 12467877763 11 1111111110 00112456666654 6
Q ss_pred cEEEeccCCCCCCCHHHHHHHHcCC-CCcEEEEcCCCC
Q 012398 411 TMLMGTSGVGKTFTKEVVEAMASFN-EKPVIFALSNPT 447 (464)
Q Consensus 411 tvLIG~S~~~g~ft~evv~~Ma~~~-erPIIFaLSNPt 447 (464)
|++| ++..+ ...+++++.++.+- +..+|..++|+.
T Consensus 64 DiVi-lav~p-~~~~~vl~~l~~~l~~~~~iis~~ag~ 99 (273)
T PRK07680 64 DLIF-ICVKP-LDIYPLLQKLAPHLTDEHCLVSITSPI 99 (273)
T ss_pred CEEE-EecCH-HHHHHHHHHHHhhcCCCCEEEEECCCC
Confidence 7665 22233 34566777665432 345777777765
No 175
>PLN02602 lactate dehydrogenase
Probab=86.91 E-value=2.4 Score=44.40 Aligned_cols=102 Identities=19% Similarity=0.310 Sum_probs=66.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhhhcCCC---CCHHHHHh
Q 012398 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPI---KSLLDAVK 406 (464)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~~~~~---~~L~e~v~ 406 (464)
.||.|+|||..|..+|-.|+. .|+ ...|.|+|.+-=...+-.-+|.+.. +|... ..+ .+.++ ++
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~-----~~l-----~~el~LiDi~~~~~~g~a~DL~~~~-~~~~~-~~i~~~~dy~~-~~ 104 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILT-----QDL-----ADELALVDVNPDKLRGEMLDLQHAA-AFLPR-TKILASTDYAV-TA 104 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----CCC-----CCEEEEEeCCCchhhHHHHHHHhhh-hcCCC-CEEEeCCCHHH-hC
Confidence 499999999999999998764 355 3579999974211111111132221 22211 121 35555 77
Q ss_pred cCCCcEEEeccCCC---CCCCH------------HHHHHHHcCCCCcEEEEcCCCC
Q 012398 407 AIKPTMLMGTSGVG---KTFTK------------EVVEAMASFNEKPVIFALSNPT 447 (464)
Q Consensus 407 ~vkptvLIG~S~~~---g~ft~------------evv~~Ma~~~erPIIFaLSNPt 447 (464)
+ +|++|=+.+.+ | -|. ++++.|.+++.+.+|+-.|||.
T Consensus 105 d--aDiVVitAG~~~k~g-~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNPv 157 (350)
T PLN02602 105 G--SDLCIVTAGARQIPG-ESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPV 157 (350)
T ss_pred C--CCEEEECCCCCCCcC-CCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCch
Confidence 6 99999555443 3 233 7888899999999999999997
No 176
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.90 E-value=3 Score=42.70 Aligned_cols=90 Identities=18% Similarity=0.237 Sum_probs=69.2
Q ss_pred hHHHHHHHHHHHHHhCCCCCcceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchh
Q 012398 309 ASVVLAGILSALKLVGGTLADQTFLFLGAG-EAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHF 387 (464)
Q Consensus 309 aaV~LAgll~Alk~~g~~l~d~riv~~GAG-sAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~ 387 (464)
.-+|.+|++.=++-.+.+++.+++||+|-+ ..|.-+|.||.. .|. .+.+|.|+
T Consensus 137 ~PcTp~avi~ll~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~A-------tVtichs~-------------- 190 (282)
T PRK14182 137 RPCTPAGVMRMLDEARVDPKGKRALVVGRSNIVGKPMAMMLLE-----RHA-------TVTIAHSR-------------- 190 (282)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC--------------
Confidence 466788889999999999999999999986 567778877754 232 35555432
Q ss_pred chhhhhhcCCCCCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEE
Q 012398 388 KKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFA 442 (464)
Q Consensus 388 k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFa 442 (464)
..+|.+.++. +|++|-..+.++.+++|+|+ +..+|+=
T Consensus 191 ----------T~nl~~~~~~--ADIvI~AvGk~~~i~~~~ik------~gaiVID 227 (282)
T PRK14182 191 ----------TADLAGEVGR--ADILVAAIGKAELVKGAWVK------EGAVVID 227 (282)
T ss_pred ----------CCCHHHHHhh--CCEEEEecCCcCccCHHHcC------CCCEEEE
Confidence 1347788887 99999999999999999998 4556653
No 177
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=86.87 E-value=1 Score=48.71 Aligned_cols=83 Identities=17% Similarity=0.103 Sum_probs=59.6
Q ss_pred HHHHHhcCCCeeeeeecCCCccHHHHHHHHcC-CCc--eeecCccchhHHHHHHHHHHHHHh--------CCCCCcceEE
Q 012398 265 TAVKQNYGEKVLIQFEDFANHNAFELLSKYSS-SHL--VFNDDIQGTASVVLAGILSALKLV--------GGTLADQTFL 333 (464)
Q Consensus 265 ~av~~~fGp~~lIq~EDf~~~~af~iL~ryr~-~~~--~FnDDiQGTaaV~LAgll~Alk~~--------g~~l~d~riv 333 (464)
..+.... |+ |..|=+....-.++.++|.- .+| ++|++..+.+....+-+++.++.. ...-.+.++|
T Consensus 140 ~~~a~~~-p~--i~~~~id~~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~dVv 216 (515)
T TIGR03140 140 NQMALLN-PN--ISHTMIDGALFQDEVEALGIQGVPAVFLNGEEFHNGRMDLAELLEKLEETAGVEAASALEQLDPYDVL 216 (515)
T ss_pred HHHHHhC-CC--ceEEEEEchhCHHHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhhccCcccchhccccCCCCEE
Confidence 3344444 43 55665777777888999973 555 357777788888888888877644 1224457899
Q ss_pred EeCcchHHHHHHHHHHH
Q 012398 334 FLGAGEAGTGIAELIAL 350 (464)
Q Consensus 334 ~~GAGsAg~GiA~ll~~ 350 (464)
|+|||+||+..|..+..
T Consensus 217 IIGgGpAGl~AA~~la~ 233 (515)
T TIGR03140 217 VVGGGPAGAAAAIYAAR 233 (515)
T ss_pred EECCCHHHHHHHHHHHH
Confidence 99999999999998765
No 178
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=86.84 E-value=1 Score=48.72 Aligned_cols=74 Identities=19% Similarity=0.168 Sum_probs=57.0
Q ss_pred eeeecCCCccHHHHHHHHcC-CCc--eeecCccchhHHHHHHHHHHHHHhC--------CCCCcceEEEeCcchHHHHHH
Q 012398 277 IQFEDFANHNAFELLSKYSS-SHL--VFNDDIQGTASVVLAGILSALKLVG--------GTLADQTFLFLGAGEAGTGIA 345 (464)
Q Consensus 277 Iq~EDf~~~~af~iL~ryr~-~~~--~FnDDiQGTaaV~LAgll~Alk~~g--------~~l~d~riv~~GAGsAg~GiA 345 (464)
|.+|=+....-.++.++|.- .+| ++||+....|....+-++.+++-.. ....+..+||+|||.||++.|
T Consensus 148 i~~~~id~~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGgGpaGl~aA 227 (517)
T PRK15317 148 ITHTMIDGALFQDEVEARNIMAVPTVFLNGEEFGQGRMTLEEILAKLDTGAAARAAEELNAKDPYDVLVVGGGPAGAAAA 227 (517)
T ss_pred ceEEEEEchhCHhHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhccccccchhhcccCCCCCEEEECCCHHHHHHH
Confidence 66777777777889999973 555 3577777888888888888887531 224456899999999999999
Q ss_pred HHHHH
Q 012398 346 ELIAL 350 (464)
Q Consensus 346 ~ll~~ 350 (464)
..+..
T Consensus 228 ~~la~ 232 (517)
T PRK15317 228 IYAAR 232 (517)
T ss_pred HHHHH
Confidence 98864
No 179
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=86.47 E-value=2.3 Score=43.33 Aligned_cols=113 Identities=19% Similarity=0.303 Sum_probs=66.5
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhhhcC-CCCCHHHHHhcCC
Q 012398 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHA-PIKSLLDAVKAIK 409 (464)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~~~-~~~~L~e~v~~vk 409 (464)
||.|+|+|..|..+|..+.. .|+ ...++++|.+-=...+...++.+. .+|..... ...+. +++++
T Consensus 2 kI~IIGaG~VG~~~a~~l~~-----~g~-----~~ev~l~D~~~~~~~g~a~dl~~~-~~~~~~~~i~~~d~-~~l~~-- 67 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLL-----RGL-----ASEIVLVDINKAKAEGEAMDLAHG-TPFVKPVRIYAGDY-ADCKG-- 67 (308)
T ss_pred EEEEECCCHHHHHHHHHHHH-----cCC-----CCEEEEEECCchhhhhHHHHHHcc-ccccCCeEEeeCCH-HHhCC--
Confidence 79999999999999998765 354 367999997411111100012211 11211100 01344 55776
Q ss_pred CcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHhcc
Q 012398 410 PTMLMGTSGVGKT--------------FTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAYTW 460 (464)
Q Consensus 410 ptvLIG~S~~~g~--------------ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpedA~~w 460 (464)
+|++|=+.+.+.. +=+++++.+.+++..-+|+-.+||. +....-++++
T Consensus 68 aDiViita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tNP~---d~~~~~~~~~ 129 (308)
T cd05292 68 ADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNPV---DVLTYVAYKL 129 (308)
T ss_pred CCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHH
Confidence 8888744443311 1247888888899999999999997 4444444443
No 180
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=86.23 E-value=0.34 Score=57.08 Aligned_cols=43 Identities=19% Similarity=0.293 Sum_probs=34.4
Q ss_pred CCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 325 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 325 ~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
++|++.||+++|||+.|+-+++.|+.+ |+.-. ...+|.++|-+
T Consensus 415 ~kL~~~kVlvvGaGGlG~e~lknLal~-----Gv~~~-~~G~i~IvD~D 457 (1008)
T TIGR01408 415 QKLQNLNIFLVGCGAIGCEMLKNFALM-----GVGTG-KKGMITVTDPD 457 (1008)
T ss_pred HHHhhCcEEEECCChHHHHHHHHHHHh-----CCCcC-CCCeEEEECCC
Confidence 468899999999999999999999875 55211 13689999986
No 181
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=86.18 E-value=1.2 Score=40.59 Aligned_cols=32 Identities=22% Similarity=0.391 Sum_probs=26.0
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccC
Q 012398 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKG 374 (464)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~G 374 (464)
+|||+|+|.||+..|..|.. .| .+++++|+..
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~-----~~-------~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELAR-----PG-------AKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHH-----TT-------SEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhc-----CC-------CeEEEEeccc
Confidence 69999999999999999973 23 4788887654
No 182
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=86.10 E-value=9.7 Score=38.35 Aligned_cols=47 Identities=23% Similarity=0.255 Sum_probs=30.4
Q ss_pred HHHHHHHHHhCCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcc
Q 012398 314 AGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDS 372 (464)
Q Consensus 314 Agll~Alk~~g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~ 372 (464)
+..+.|++..+. ..+++|+|.|+|+.|...+.+... .|. ++++.+|+
T Consensus 156 ~~a~~al~~~~~-~~g~~VlV~G~G~vG~~aiqlak~-----~G~------~~Vi~~~~ 202 (343)
T PRK09880 156 AVAIHAAHQAGD-LQGKRVFVSGVGPIGCLIVAAVKT-----LGA------AEIVCADV 202 (343)
T ss_pred HHHHHHHHhcCC-CCCCEEEEECCCHHHHHHHHHHHH-----cCC------cEEEEEeC
Confidence 333555554443 368899999999888877655433 353 46777765
No 183
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=86.07 E-value=3.4 Score=42.75 Aligned_cols=38 Identities=24% Similarity=0.287 Sum_probs=31.0
Q ss_pred CCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 324 GGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 324 g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
+..|.+.+|.|+|.|..|..+|+.+.. .|+ +++.+|+.
T Consensus 141 ~~~l~g~~VgIIG~G~IG~~vA~~L~~-----~G~-------~V~~~d~~ 178 (330)
T PRK12480 141 SKPVKNMTVAIIGTGRIGAATAKIYAG-----FGA-------TITAYDAY 178 (330)
T ss_pred ccccCCCEEEEECCCHHHHHHHHHHHh-----CCC-------EEEEEeCC
Confidence 456899999999999999999998864 254 58888864
No 184
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=85.78 E-value=2.2 Score=41.62 Aligned_cols=35 Identities=20% Similarity=0.322 Sum_probs=26.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
.||.|+|+|..|..+|..+... |. ...+++++|++
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~-----g~----~~~~v~v~~r~ 37 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLAS-----GV----PAKDIIVSDPS 37 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhC-----CC----CcceEEEEcCC
Confidence 4799999999999999988653 42 13467888764
No 185
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=85.64 E-value=0.75 Score=43.97 Aligned_cols=39 Identities=31% Similarity=0.452 Sum_probs=34.0
Q ss_pred CCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccC
Q 012398 325 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKG 374 (464)
Q Consensus 325 ~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~G 374 (464)
++|++.||+|+|+|.-|.-+|+.|+.+ |+ ++|.++|.+=
T Consensus 15 ~~L~~s~VlviG~gglGsevak~L~~~-----GV------g~i~lvD~d~ 53 (198)
T cd01485 15 NKLRSAKVLIIGAGALGAEIAKNLVLA-----GI------DSITIVDHRL 53 (198)
T ss_pred HHHhhCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEECCc
Confidence 568899999999999999999999874 64 6899999874
No 186
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.62 E-value=3.9 Score=42.16 Aligned_cols=91 Identities=18% Similarity=0.297 Sum_probs=70.3
Q ss_pred hHHHHHHHHHHHHHhCCCCCcceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchh
Q 012398 309 ASVVLAGILSALKLVGGTLADQTFLFLGAG-EAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHF 387 (464)
Q Consensus 309 aaV~LAgll~Alk~~g~~l~d~riv~~GAG-sAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~ 387 (464)
.-+|..|++.=|+-.|.+++.+++||+|.+ ..|.-+|.||.. .|. .+.+|.|+
T Consensus 138 ~PcTp~aii~lL~~~~i~l~Gk~vvVIGrS~iVGkPla~lL~~-----~~a-------tVtv~hs~-------------- 191 (297)
T PRK14186 138 RSCTPAGVMRLLRSQQIDIAGKKAVVVGRSILVGKPLALMLLA-----ANA-------TVTIAHSR-------------- 191 (297)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CCC-------EEEEeCCC--------------
Confidence 456788888999999999999999999975 568888888864 242 34555432
Q ss_pred chhhhhhcCCCCCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEc
Q 012398 388 KKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFAL 443 (464)
Q Consensus 388 k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaL 443 (464)
..+|.+.+++ +|++|-..+.++.|++++|+ +..||+=-
T Consensus 192 ----------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik------~gavVIDv 229 (297)
T PRK14186 192 ----------TQDLASITRE--ADILVAAAGRPNLIGAEMVK------PGAVVVDV 229 (297)
T ss_pred ----------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC------CCCEEEEe
Confidence 1357888887 99999999999999999998 55577543
No 187
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.41 E-value=2.4 Score=43.86 Aligned_cols=31 Identities=23% Similarity=0.323 Sum_probs=25.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcc
Q 012398 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDS 372 (464)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~ 372 (464)
.||.|+|||..|.|||..++.+ |+ ++.++|.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~a-----G~-------~V~l~D~ 38 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAH-----GL-------DVVAWDP 38 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhC-----CC-------eEEEEeC
Confidence 5899999999999999998763 54 4667775
No 188
>PRK06487 glycerate dehydrogenase; Provisional
Probab=85.27 E-value=7.1 Score=40.06 Aligned_cols=83 Identities=16% Similarity=0.168 Sum_probs=51.1
Q ss_pred CCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhhhcCCCCCHHHH
Q 012398 325 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDA 404 (464)
Q Consensus 325 ~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~L~e~ 404 (464)
..|.++++.|+|.|..|..+|+++.. + |+ +|+.+|+.+- ... + ...+|.|+
T Consensus 144 ~~l~gktvgIiG~G~IG~~vA~~l~~-f----gm-------~V~~~~~~~~-----~~~--------~----~~~~l~el 194 (317)
T PRK06487 144 VELEGKTLGLLGHGELGGAVARLAEA-F----GM-------RVLIGQLPGR-----PAR--------P----DRLPLDEL 194 (317)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhh-C----CC-------EEEEECCCCC-----ccc--------c----cccCHHHH
Confidence 36889999999999999999998853 2 64 5777776521 000 0 01256666
Q ss_pred HhcCCCcEEEec----cCCCCCCCHHHHHHHHcCCCCcEEE
Q 012398 405 VKAIKPTMLMGT----SGVGKTFTKEVVEAMASFNEKPVIF 441 (464)
Q Consensus 405 v~~vkptvLIG~----S~~~g~ft~evv~~Ma~~~erPIIF 441 (464)
++. .|+++=. ....|.|+++.+..|. +..++.
T Consensus 195 l~~--sDiv~l~lPlt~~T~~li~~~~~~~mk---~ga~lI 230 (317)
T PRK06487 195 LPQ--VDALTLHCPLTEHTRHLIGARELALMK---PGALLI 230 (317)
T ss_pred HHh--CCEEEECCCCChHHhcCcCHHHHhcCC---CCeEEE
Confidence 665 6666521 1112466666666664 344444
No 189
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=85.25 E-value=7.4 Score=39.97 Aligned_cols=37 Identities=22% Similarity=0.136 Sum_probs=30.3
Q ss_pred CCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 325 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 325 ~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
..++++++.|+|.|..|..+|+.+... |+ +++.+|+.
T Consensus 132 ~~l~g~tvgIvG~G~IG~~vA~~l~af-----G~-------~V~~~~~~ 168 (312)
T PRK15469 132 YHREDFTIGILGAGVLGSKVAQSLQTW-----GF-------PLRCWSRS 168 (312)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEeCC
Confidence 468899999999999999999999753 65 46777763
No 190
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=85.21 E-value=1.4 Score=45.44 Aligned_cols=21 Identities=33% Similarity=0.506 Sum_probs=19.3
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 012398 330 QTFLFLGAGEAGTGIAELIAL 350 (464)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~ 350 (464)
.||.|+|||+-|..+|..|.+
T Consensus 8 mkI~IiGaGa~G~alA~~La~ 28 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICAR 28 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHH
Confidence 789999999999999998865
No 191
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=85.04 E-value=0.42 Score=52.04 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=22.6
Q ss_pred CCCCcceEEEeCcchHHHHHHHHHHH
Q 012398 325 GTLADQTFLFLGAGEAGTGIAELIAL 350 (464)
Q Consensus 325 ~~l~d~riv~~GAGsAg~GiA~ll~~ 350 (464)
+..++.||||+|||.||++.|+-|++
T Consensus 17 ~~~~~~kIvIIGAG~AGLaAA~rLle 42 (498)
T KOG0685|consen 17 KARGNAKIVIIGAGIAGLAAATRLLE 42 (498)
T ss_pred hccCCceEEEECCchHHHHHHHHHHH
Confidence 45566799999999999999999984
No 192
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=85.03 E-value=12 Score=39.92 Aligned_cols=67 Identities=21% Similarity=0.289 Sum_probs=49.7
Q ss_pred cCCCceeecCcc---chhHHHHHHHHHHHHH------------------hCCCCCcceEEEeCcchHHHHHHHHHHHHHH
Q 012398 295 SSSHLVFNDDIQ---GTASVVLAGILSALKL------------------VGGTLADQTFLFLGAGEAGTGIAELIALEMS 353 (464)
Q Consensus 295 r~~~~~FnDDiQ---GTaaV~LAgll~Alk~------------------~g~~l~d~riv~~GAGsAg~GiA~ll~~a~~ 353 (464)
+..|+|+|---- .+|=-+++.+|+.+|- .|..|.+.++.|+|.|..|..+|+.+..
T Consensus 96 ~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~L~gktvGIiG~G~IG~~vA~~~~~--- 172 (409)
T PRK11790 96 KRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKSAAGSFEVRGKTLGIVGYGHIGTQLSVLAES--- 172 (409)
T ss_pred hCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCcccccccCcccCCCCEEEEECCCHHHHHHHHHHHH---
Confidence 468999985322 3445568888887763 2456899999999999999999998864
Q ss_pred HhcCCChhhhcCeEEEEccc
Q 012398 354 KQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 354 ~~~G~s~~eA~~~i~lvD~~ 373 (464)
-|+ +++.+|+.
T Consensus 173 --fGm-------~V~~~d~~ 183 (409)
T PRK11790 173 --LGM-------RVYFYDIE 183 (409)
T ss_pred --CCC-------EEEEECCC
Confidence 265 57888864
No 193
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=84.90 E-value=2 Score=43.45 Aligned_cols=41 Identities=27% Similarity=0.320 Sum_probs=34.8
Q ss_pred CCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcc
Q 012398 325 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLI 376 (464)
Q Consensus 325 ~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl 376 (464)
.+|++.+|+|+|+|..|.-+|+.|+.+ |+ .+|.++|.+=+-
T Consensus 26 ~kL~~s~VlVvG~GGVGs~vae~Lar~-----GV------g~itLiD~D~V~ 66 (268)
T PRK15116 26 QLFADAHICVVGIGGVGSWAAEALART-----GI------GAITLIDMDDVC 66 (268)
T ss_pred HHhcCCCEEEECcCHHHHHHHHHHHHc-----CC------CEEEEEeCCEec
Confidence 468899999999999999999999874 64 689999987544
No 194
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=84.61 E-value=3.8 Score=43.20 Aligned_cols=92 Identities=14% Similarity=0.202 Sum_probs=69.9
Q ss_pred hhHHHHHHHHHHHHHhCCCCCcceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCch
Q 012398 308 TASVVLAGILSALKLVGGTLADQTFLFLGAG-EAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQH 386 (464)
Q Consensus 308 TaaV~LAgll~Alk~~g~~l~d~riv~~GAG-sAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~ 386 (464)
-.-+|-+|++.=|+-.|.+++.+++||+|-+ -.|.-+|.||.. .|. .+.+|.++
T Consensus 193 ~~PCTp~avi~LL~~~~i~l~GK~vvVIGRS~iVGkPla~LL~~-----~~A-------TVTicHs~------------- 247 (345)
T PLN02897 193 FVSCTPKGCVELLIRSGVEIAGKNAVVIGRSNIVGLPMSLLLQR-----HDA-------TVSTVHAF------------- 247 (345)
T ss_pred CcCCCHHHHHHHHHHhCCCCCCCEEEEECCCccccHHHHHHHHH-----CCC-------EEEEEcCC-------------
Confidence 3466788888888999999999999999975 567778877754 232 34555442
Q ss_pred hchhhhhhcCCCCCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEc
Q 012398 387 FKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFAL 443 (464)
Q Consensus 387 ~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaL 443 (464)
.++|.+.++. +|++|-..+.++.|+.|||+ +..||.=-
T Consensus 248 -----------T~nl~~~~~~--ADIvIsAvGkp~~v~~d~vk------~GavVIDV 285 (345)
T PLN02897 248 -----------TKDPEQITRK--ADIVIAAAGIPNLVRGSWLK------PGAVVIDV 285 (345)
T ss_pred -----------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC------CCCEEEEc
Confidence 1347788887 99999999999999999998 45576543
No 195
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=84.22 E-value=3.4 Score=42.74 Aligned_cols=108 Identities=18% Similarity=0.287 Sum_probs=68.0
Q ss_pred CCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCc-ccCCCccCCchhchhhhhhcCC--CCCH
Q 012398 325 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGL-IVSSRKESLQHFKKPWAHEHAP--IKSL 401 (464)
Q Consensus 325 ~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GL-l~~~r~~~l~~~k~~fa~~~~~--~~~L 401 (464)
++.+..||.|+|+|..|+++|-.|+. .|++ +++.++|-+== +--+.+| |+ |-.+|-+...- .++.
T Consensus 16 ~~~~~~KItVVG~G~VGmAca~siL~-----k~La-----del~lvDv~~dklkGE~MD-Lq-H~s~f~~~~~V~~~~Dy 83 (332)
T KOG1495|consen 16 KEFKHNKITVVGVGQVGMACAISILL-----KGLA-----DELVLVDVNEDKLKGEMMD-LQ-HGSAFLSTPNVVASKDY 83 (332)
T ss_pred ccccCceEEEEccchHHHHHHHHHHH-----hhhh-----hceEEEecCcchhhhhhhh-hc-cccccccCCceEecCcc
Confidence 45667899999999999999998876 3663 57889996422 2222222 32 33455543211 1233
Q ss_pred HHHHhcCCCcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEEcCCCC
Q 012398 402 LDAVKAIKPTMLMGTSGVGKT--------------FTKEVVEAMASFNEKPVIFALSNPT 447 (464)
Q Consensus 402 ~e~v~~vkptvLIG~S~~~g~--------------ft~evv~~Ma~~~erPIIFaLSNPt 447 (464)
.. -+ ..++.|=+.+..+. +=+.+|....++.++-|+.-.|||.
T Consensus 84 ~~-sa--~S~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPV 140 (332)
T KOG1495|consen 84 SV-SA--NSKLVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPV 140 (332)
T ss_pred cc-cC--CCcEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCch
Confidence 22 22 25566544333221 3357888888999999999999998
No 196
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=84.18 E-value=9.3 Score=39.44 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=23.5
Q ss_pred CCCCCcceEEEeCcchHHHHHHHHHH
Q 012398 324 GGTLADQTFLFLGAGEAGTGIAELIA 349 (464)
Q Consensus 324 g~~l~d~riv~~GAGsAg~GiA~ll~ 349 (464)
|..|.++++.|+|.|..|..+|+.+.
T Consensus 140 g~~L~gktvGIiG~G~IG~~va~~l~ 165 (323)
T PRK15409 140 GTDVHHKTLGIVGMGRIGMALAQRAH 165 (323)
T ss_pred cCCCCCCEEEEEcccHHHHHHHHHHH
Confidence 45689999999999999999999875
No 197
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=84.17 E-value=2.3 Score=42.95 Aligned_cols=31 Identities=32% Similarity=0.382 Sum_probs=24.7
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
||.|+|||+.|..+|..|.++ | .++.+++++
T Consensus 2 kI~IiGaGa~G~ala~~L~~~-----g-------~~V~l~~r~ 32 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSK-----K-------ISVNLWGRN 32 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHC-----C-------CeEEEEecC
Confidence 699999999999999998753 4 356677764
No 198
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=84.13 E-value=0.87 Score=43.54 Aligned_cols=39 Identities=21% Similarity=0.345 Sum_probs=34.2
Q ss_pred CCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccC
Q 012398 325 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKG 374 (464)
Q Consensus 325 ~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~G 374 (464)
++|++.||+|+|+|.-|.-+|+.|+.+ |+ ++|.++|.+-
T Consensus 17 ~~L~~s~VlIiG~gglG~evak~La~~-----GV------g~i~lvD~d~ 55 (197)
T cd01492 17 KRLRSARILLIGLKGLGAEIAKNLVLS-----GI------GSLTILDDRT 55 (197)
T ss_pred HHHHhCcEEEEcCCHHHHHHHHHHHHc-----CC------CEEEEEECCc
Confidence 578899999999999999999999764 64 6899999873
No 199
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=84.10 E-value=6.4 Score=39.59 Aligned_cols=93 Identities=15% Similarity=0.210 Sum_probs=57.9
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhhh-cCCCCCHHHHHhcC-
Q 012398 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE-HAPIKSLLDAVKAI- 408 (464)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~-~~~~~~L~e~v~~v- 408 (464)
||.|+|.|..|.++|+.|... |. +++++|+.. .+ . +.++.. .....++.|+++..
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~-----g~-------~v~v~dr~~----~~---~----~~~~~~g~~~~~~~~e~~~~~~ 58 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRG-----GH-------EVVGYDRNP----EA---V----EALAEEGATGADSLEELVAKLP 58 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHC-----CC-------eEEEEECCH----HH---H----HHHHHCCCeecCCHHHHHhhcC
Confidence 799999999999999998753 42 577777741 11 1 122221 11235788888765
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEEcCCCC
Q 012398 409 KPTMLMGTSGVGKTFTKEVVEAMASF-NEKPVIFALSNPT 447 (464)
Q Consensus 409 kptvLIG~S~~~g~ft~evv~~Ma~~-~erPIIFaLSNPt 447 (464)
++|++|=+- +.+...++++..+... .+..||+-+|+-.
T Consensus 59 ~~dvvi~~v-~~~~~~~~v~~~l~~~l~~g~ivid~st~~ 97 (301)
T PRK09599 59 APRVVWLMV-PAGEITDATIDELAPLLSPGDIVIDGGNSY 97 (301)
T ss_pred CCCEEEEEe-cCCcHHHHHHHHHHhhCCCCCEEEeCCCCC
Confidence 377766333 2334666776655432 4568888888644
No 200
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=84.03 E-value=2.5 Score=41.87 Aligned_cols=49 Identities=20% Similarity=0.269 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhCCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 313 LAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 313 LAgll~Alk~~g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
-.|++.+++-.+...+..+++|+|+|.+|.+++..+.+ .| .+++++|+.
T Consensus 101 ~~G~~~~l~~~~~~~~~k~vliiGaGg~g~aia~~L~~-----~g-------~~v~v~~R~ 149 (270)
T TIGR00507 101 GIGLVSDLERLIPLRPNQRVLIIGAGGAARAVALPLLK-----AD-------CNVIIANRT 149 (270)
T ss_pred HHHHHHHHHhcCCCccCCEEEEEcCcHHHHHHHHHHHH-----CC-------CEEEEEeCC
Confidence 34556666654555667899999999888888887764 24 268888763
No 201
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=83.95 E-value=2.5 Score=43.12 Aligned_cols=102 Identities=18% Similarity=0.195 Sum_probs=63.2
Q ss_pred EeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhhhcCCCCCHHHHHhcCCCcEE
Q 012398 334 FLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIKPTML 413 (464)
Q Consensus 334 ~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvL 413 (464)
|+|||..|..+|-+|+. .|+ ...|.++|.+-=..++-.-+|.+..-.+.++..-..+-.+.+++ +|++
T Consensus 1 iIGaG~VG~~~a~~l~~-----~~l-----~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~d--aDiv 68 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLN-----QGI-----ADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKD--ADLV 68 (299)
T ss_pred CCCcCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCC--CCEE
Confidence 57999999999998864 355 35899999842211111111322221111110001233567887 9999
Q ss_pred EeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEEcCCCC
Q 012398 414 MGTSGVG---KT-----------FTKEVVEAMASFNEKPVIFALSNPT 447 (464)
Q Consensus 414 IG~S~~~---g~-----------ft~evv~~Ma~~~erPIIFaLSNPt 447 (464)
|=+.+.+ |- +=+++++.+.+++..-+|+-.|||.
T Consensus 69 Vitag~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~ 116 (299)
T TIGR01771 69 VITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPV 116 (299)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 9665553 21 1246788888999999999999997
No 202
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=83.85 E-value=6.1 Score=40.64 Aligned_cols=104 Identities=15% Similarity=0.110 Sum_probs=66.2
Q ss_pred CcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhhhc---CCCCCHHHH
Q 012398 328 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEH---APIKSLLDA 404 (464)
Q Consensus 328 ~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~~---~~~~~L~e~ 404 (464)
.-.++.|+|+|.-|-.-++.+... . ..++|+++|+. .++ ...+...+.+.. ....+..|+
T Consensus 127 ~~~~lgiiG~G~qA~~~l~al~~~--~--------~~~~v~V~~r~----~~~---~~~~~~~~~~~g~~v~~~~~~~ea 189 (325)
T TIGR02371 127 DSSVLGIIGAGRQAWTQLEALSRV--F--------DLEEVSVYCRT----PST---REKFALRASDYEVPVRAATDPREA 189 (325)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhc--C--------CCCEEEEECCC----HHH---HHHHHHHHHhhCCcEEEeCCHHHH
Confidence 357899999999877766555331 1 13688888873 222 222222222211 124689999
Q ss_pred HhcCCCcEEEecc-CCCCCCCHHHHHHHHcCCCCcEEEEcCCCC-CCCCCCHHH
Q 012398 405 VKAIKPTMLMGTS-GVGKTFTKEVVEAMASFNEKPVIFALSNPT-SQSECTAEE 456 (464)
Q Consensus 405 v~~vkptvLIG~S-~~~g~ft~evv~~Ma~~~erPIIFaLSNPt-~~~E~tped 456 (464)
++. .||+|-++ +....|..++++ +..-|-++.-.+ .+.|+.++-
T Consensus 190 v~~--aDiVitaT~s~~P~~~~~~l~------~g~~v~~vGs~~p~~~Eld~~~ 235 (325)
T TIGR02371 190 VEG--CDILVTTTPSRKPVVKADWVS------EGTHINAIGADAPGKQELDPEI 235 (325)
T ss_pred hcc--CCEEEEecCCCCcEecHHHcC------CCCEEEecCCCCcccccCCHHH
Confidence 986 99999654 333488888885 566788887544 368998863
No 203
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=83.46 E-value=7.5 Score=38.59 Aligned_cols=36 Identities=22% Similarity=0.248 Sum_probs=26.3
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcc
Q 012398 329 DQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDS 372 (464)
Q Consensus 329 d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~ 372 (464)
..||.|+|+|..|.+||+.|+.. |.- ...+|+++|+
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~-----g~~---~~~~v~v~~r 38 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHA-----NVV---KGEQITVSNR 38 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHC-----CCC---CcceEEEECC
Confidence 35899999999999999988753 410 1245777775
No 204
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=83.45 E-value=8.9 Score=42.10 Aligned_cols=66 Identities=21% Similarity=0.227 Sum_probs=46.0
Q ss_pred CCCceeecCc---cchhHHHHHHHHHHHHH------------------hCCCCCcceEEEeCcchHHHHHHHHHHHHHHH
Q 012398 296 SSHLVFNDDI---QGTASVVLAGILSALKL------------------VGGTLADQTFLFLGAGEAGTGIAELIALEMSK 354 (464)
Q Consensus 296 ~~~~~FnDDi---QGTaaV~LAgll~Alk~------------------~g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~ 354 (464)
..+++.|-.- +.+|=-+++-+|+..|- .|..|.+++|.|+|.|..|..+|+.+...
T Consensus 86 ~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA~~l~~f--- 162 (526)
T PRK13581 86 RGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHASLKAGKWERKKFMGVELYGKTLGIIGLGRIGSEVAKRAKAF--- 162 (526)
T ss_pred CCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCccCccccccCCCEEEEECCCHHHHHHHHHHHhC---
Confidence 3566666321 12444566777766653 24568899999999999999999998642
Q ss_pred hcCCChhhhcCeEEEEccc
Q 012398 355 QTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 355 ~~G~s~~eA~~~i~lvD~~ 373 (464)
|+ +++.+|+.
T Consensus 163 --G~-------~V~~~d~~ 172 (526)
T PRK13581 163 --GM-------KVIAYDPY 172 (526)
T ss_pred --CC-------EEEEECCC
Confidence 64 68888874
No 205
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=83.17 E-value=2.5 Score=45.81 Aligned_cols=48 Identities=29% Similarity=0.378 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhCCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcc
Q 012398 313 LAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDS 372 (464)
Q Consensus 313 LAgll~Alk~~g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~ 372 (464)
-.|++.+++-.+.++++.+++|+|+|.+|.+++..+.+ .|. +++++|+
T Consensus 316 ~~G~~~~l~~~~~~~~~k~vlIiGaGgiG~aia~~L~~-----~G~-------~V~i~~R 363 (477)
T PRK09310 316 GEGLFSLLKQKNIPLNNQHVAIVGAGGAAKAIATTLAR-----AGA-------ELLIFNR 363 (477)
T ss_pred HHHHHHHHHhcCCCcCCCEEEEEcCcHHHHHHHHHHHH-----CCC-------EEEEEeC
Confidence 34778888888889999999999999888888887764 352 5777776
No 206
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=82.86 E-value=4.5 Score=43.91 Aligned_cols=114 Identities=11% Similarity=-0.012 Sum_probs=67.2
Q ss_pred cceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhhhcCCCCCHHHHHhc
Q 012398 329 DQTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKA 407 (464)
Q Consensus 329 d~riv~~GA-GsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~ 407 (464)
=.||.|+|| |..|..+|-.|+..-+ .|..+.- ..+++++|.+-=...+-.-+|.+..-++.....-..+-.+.+++
T Consensus 100 ~~KV~IIGAaG~VG~~~A~~L~~~~v--~g~~~~i-~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kd 176 (444)
T PLN00112 100 LINVAVSGAAGMISNHLLFKLASGEV--FGPDQPI-ALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQD 176 (444)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccc--ccCCCCc-ccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCc
Confidence 379999999 9999999998865200 1111111 24788998742222211111332222222111001234566777
Q ss_pred CCCcEEEeccCCC---C-----------CCCHHHHHHHHc-CCCCcEEEEcCCCC
Q 012398 408 IKPTMLMGTSGVG---K-----------TFTKEVVEAMAS-FNEKPVIFALSNPT 447 (464)
Q Consensus 408 vkptvLIG~S~~~---g-----------~ft~evv~~Ma~-~~erPIIFaLSNPt 447 (464)
+|++|=+.+.+ | .+=+++.+.+.+ .+...||+-.|||.
T Consensus 177 --aDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPv 229 (444)
T PLN00112 177 --AEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPC 229 (444)
T ss_pred --CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcH
Confidence 99998665553 2 123567888888 58999999999997
No 207
>PLN03139 formate dehydrogenase; Provisional
Probab=82.75 E-value=12 Score=39.86 Aligned_cols=94 Identities=17% Similarity=0.102 Sum_probs=58.6
Q ss_pred CCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhhhcCCCCCHHH
Q 012398 324 GGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLD 403 (464)
Q Consensus 324 g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~L~e 403 (464)
+..|.+.+|.|+|.|..|..+|+.+... |+ +++.+|+...- .+ . .+ .+ ......+|.|
T Consensus 194 ~~~L~gktVGIVG~G~IG~~vA~~L~af-----G~-------~V~~~d~~~~~----~~-~--~~-~~--g~~~~~~l~e 251 (386)
T PLN03139 194 AYDLEGKTVGTVGAGRIGRLLLQRLKPF-----NC-------NLLYHDRLKMD----PE-L--EK-ET--GAKFEEDLDA 251 (386)
T ss_pred CcCCCCCEEEEEeecHHHHHHHHHHHHC-----CC-------EEEEECCCCcc----hh-h--Hh-hc--CceecCCHHH
Confidence 4568999999999999999999999642 54 57778875320 00 0 00 00 0011246888
Q ss_pred HHhcCCCcEEEeccC----CCCCCCHHHHHHHHcCCCCcEEEEcC
Q 012398 404 AVKAIKPTMLMGTSG----VGKTFTKEVVEAMASFNEKPVIFALS 444 (464)
Q Consensus 404 ~v~~vkptvLIG~S~----~~g~ft~evv~~Ma~~~erPIIFaLS 444 (464)
+++. .|+++=..- .-+.|+++.+..|. +..+++=.|
T Consensus 252 ll~~--sDvV~l~lPlt~~T~~li~~~~l~~mk---~ga~lIN~a 291 (386)
T PLN03139 252 MLPK--CDVVVINTPLTEKTRGMFNKERIAKMK---KGVLIVNNA 291 (386)
T ss_pred HHhh--CCEEEEeCCCCHHHHHHhCHHHHhhCC---CCeEEEECC
Confidence 8876 787763221 11477888888885 455555433
No 208
>PRK07340 ornithine cyclodeaminase; Validated
Probab=82.56 E-value=11 Score=38.36 Aligned_cols=104 Identities=10% Similarity=0.134 Sum_probs=65.3
Q ss_pred CCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhhhcCC--CCCHHHH
Q 012398 327 LADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAP--IKSLLDA 404 (464)
Q Consensus 327 l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~~~~--~~~L~e~ 404 (464)
....+++|+|+|..|...++.+... .++ ++|+++|+. .++ ...+...+...... ..++.|+
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~----~~~------~~v~v~~r~----~~~---a~~~a~~~~~~~~~~~~~~~~~a 185 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAG----LPV------RRVWVRGRT----AAS---AAAFCAHARALGPTAEPLDGEAI 185 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHh----CCC------CEEEEEcCC----HHH---HHHHHHHHHhcCCeeEECCHHHH
Confidence 3567999999999999988887653 232 578888874 222 12222222111111 3579999
Q ss_pred HhcCCCcEEEeccCCC-CCCCHHHHHHHHcCCCCcEEEEcCCC-CCCCCCCHHH
Q 012398 405 VKAIKPTMLMGTSGVG-KTFTKEVVEAMASFNEKPVIFALSNP-TSQSECTAEE 456 (464)
Q Consensus 405 v~~vkptvLIG~S~~~-g~ft~evv~~Ma~~~erPIIFaLSNP-t~~~E~tped 456 (464)
+++ .|++|-++... .+|.. +++ +.--|-++.-. ..+.|+.+|-
T Consensus 186 v~~--aDiVitaT~s~~Pl~~~-~~~------~g~hi~~iGs~~p~~~El~~~~ 230 (304)
T PRK07340 186 PEA--VDLVVTATTSRTPVYPE-AAR------AGRLVVAVGAFTPDMAELAPRT 230 (304)
T ss_pred hhc--CCEEEEccCCCCceeCc-cCC------CCCEEEecCCCCCCcccCCHHH
Confidence 986 99999876433 46765 342 45567777542 2478988763
No 209
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=82.35 E-value=6.6 Score=39.93 Aligned_cols=35 Identities=23% Similarity=0.378 Sum_probs=27.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcC-CChhhhcCeEEEEccc
Q 012398 330 QTFLFLGAGEAGTGIAELIALEMSKQTK-APIEEARKKIWLVDSK 373 (464)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~a~~~~~G-~s~~eA~~~i~lvD~~ 373 (464)
.||.|+|+|..|-+|+.-|+.. | ++ .++|+++|+.
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~-----g~~~----~~~I~v~~~~ 37 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKS-----GALP----PEEIIVTNRS 37 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhc-----CCCC----cceEEEeCCC
Confidence 5899999999999998888764 5 32 4678887764
No 210
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=82.31 E-value=1.5 Score=43.23 Aligned_cols=106 Identities=20% Similarity=0.210 Sum_probs=62.8
Q ss_pred CCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCC--Cc-----cCCchhchhhhh----
Q 012398 325 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSS--RK-----ESLQHFKKPWAH---- 393 (464)
Q Consensus 325 ~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~--r~-----~~l~~~k~~fa~---- 393 (464)
.+|++.+|+|+|+|..|.-+|+.|+.+ |+ .+|.++|.+=+=..+ |. +++-..|..-+.
T Consensus 7 ~~L~~~~VlVvG~GGvGs~va~~Lar~-----GV------g~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~ 75 (231)
T cd00755 7 EKLRNAHVAVVGLGGVGSWAAEALARS-----GV------GKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIR 75 (231)
T ss_pred HHHhCCCEEEECCCHHHHHHHHHHHHc-----CC------CEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHH
Confidence 357889999999999999999999764 64 689999987321111 00 011111111111
Q ss_pred h-cCC---------C--CCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 012398 394 E-HAP---------I--KSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALS 444 (464)
Q Consensus 394 ~-~~~---------~--~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaLS 444 (464)
. .+. + .++.+.+. -++|++|-+.... -.+-.+-..+..+..|+|.+++
T Consensus 76 ~inP~~~V~~~~~~i~~~~~~~l~~-~~~D~VvdaiD~~--~~k~~L~~~c~~~~ip~I~s~g 135 (231)
T cd00755 76 DINPECEVDAVEEFLTPDNSEDLLG-GDPDFVVDAIDSI--RAKVALIAYCRKRKIPVISSMG 135 (231)
T ss_pred HHCCCcEEEEeeeecCHhHHHHHhc-CCCCEEEEcCCCH--HHHHHHHHHHHHhCCCEEEEeC
Confidence 1 111 1 13344442 2588888765422 2344566677777899998876
No 211
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=82.01 E-value=2.8 Score=43.69 Aligned_cols=20 Identities=35% Similarity=0.582 Sum_probs=18.3
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 012398 331 TFLFLGAGEAGTGIAELIAL 350 (464)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~ 350 (464)
||.|+|||+-|+++|..+..
T Consensus 1 kI~VIGaG~wGtALA~~la~ 20 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAE 20 (342)
T ss_pred CEEEECcCHHHHHHHHHHHH
Confidence 68999999999999999965
No 212
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=81.99 E-value=1.9 Score=38.33 Aligned_cols=101 Identities=22% Similarity=0.176 Sum_probs=58.3
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCc-------cCCchhchhhhh----h-cCC-
Q 012398 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRK-------ESLQHFKKPWAH----E-HAP- 397 (464)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~-------~~l~~~k~~fa~----~-~~~- 397 (464)
||+++|+|..|..+|+.|+.+ |+ ++|.++|.+-+=..+-. +++-..|...++ . .+.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~-----Gv------~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v 69 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARS-----GV------GKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGV 69 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHC-----CC------CEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCc
Confidence 689999999999999999864 64 68999998633211110 011111111111 0 111
Q ss_pred --------CC--CHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCC
Q 012398 398 --------IK--SLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNP 446 (464)
Q Consensus 398 --------~~--~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaLSNP 446 (464)
.. +..+.++ ++|++|.++.. .-....+..+++....|.|.+-+..
T Consensus 70 ~i~~~~~~~~~~~~~~~~~--~~diVi~~~d~--~~~~~~l~~~~~~~~i~~i~~~~~g 124 (143)
T cd01483 70 NVTAVPEGISEDNLDDFLD--GVDLVIDAIDN--IAVRRALNRACKELGIPVIDAGGLG 124 (143)
T ss_pred EEEEEeeecChhhHHHHhc--CCCEEEECCCC--HHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 11 1234444 48888877663 2334556666766778888776654
No 213
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=81.90 E-value=9.8 Score=41.79 Aligned_cols=66 Identities=26% Similarity=0.265 Sum_probs=45.3
Q ss_pred CCCceeecCc---cchhHHHHHHHHHHHHH------------------hCCCCCcceEEEeCcchHHHHHHHHHHHHHHH
Q 012398 296 SSHLVFNDDI---QGTASVVLAGILSALKL------------------VGGTLADQTFLFLGAGEAGTGIAELIALEMSK 354 (464)
Q Consensus 296 ~~~~~FnDDi---QGTaaV~LAgll~Alk~------------------~g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~ 354 (464)
..|++.|--- +.+|=-++|.+|+..|- .|..|.+++|.|+|.|..|-.+|+.+..
T Consensus 84 ~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA~~l~~---- 159 (525)
T TIGR01327 84 RGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGEWDRKAFMGTELYGKTLGVIGLGRIGSIVAKRAKA---- 159 (525)
T ss_pred CCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCccccccCccccCCCEEEEECCCHHHHHHHHHHHh----
Confidence 3555555321 23444556666665542 3557899999999999999999999864
Q ss_pred hcCCChhhhcCeEEEEccc
Q 012398 355 QTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 355 ~~G~s~~eA~~~i~lvD~~ 373 (464)
.|+ +++.+|+.
T Consensus 160 -fG~-------~V~~~d~~ 170 (525)
T TIGR01327 160 -FGM-------KVLAYDPY 170 (525)
T ss_pred -CCC-------EEEEECCC
Confidence 254 58888874
No 214
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=81.88 E-value=7.6 Score=39.67 Aligned_cols=104 Identities=14% Similarity=0.188 Sum_probs=66.3
Q ss_pred CcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhhh----cCCCCCHHH
Q 012398 328 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE----HAPIKSLLD 403 (464)
Q Consensus 328 ~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~----~~~~~~L~e 403 (464)
.-.++.|+|+|.-|..-++.++.. .. .++|.+.|+. .++ ...+.+.+.+. -....+++|
T Consensus 116 da~~l~iiGaG~QA~~~~~a~~~v----~~------i~~v~v~~r~----~~~---a~~f~~~~~~~~~~~v~~~~~~~e 178 (301)
T PRK06407 116 NVENFTIIGSGFQAETQLEGMASV----YN------PKRIRVYSRN----FDH---ARAFAERFSKEFGVDIRPVDNAEA 178 (301)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhc----CC------CCEEEEECCC----HHH---HHHHHHHHHHhcCCcEEEeCCHHH
Confidence 468999999999888877766653 12 4678877763 222 23333333321 112468999
Q ss_pred HHhcCCCcEEEeccC-CCCCCCHHHHHHHHcCCCCcEEEEc-CCCCCCCCCCHHH
Q 012398 404 AVKAIKPTMLMGTSG-VGKTFTKEVVEAMASFNEKPVIFAL-SNPTSQSECTAEE 456 (464)
Q Consensus 404 ~v~~vkptvLIG~S~-~~g~ft~evv~~Ma~~~erPIIFaL-SNPt~~~E~tped 456 (464)
+++. +||++-+.. ....|..++++. ..-|-++ |+--.+.|+.++-
T Consensus 179 av~~--aDIV~taT~s~~P~~~~~~l~p------g~hV~aiGs~~p~~~El~~~~ 225 (301)
T PRK06407 179 ALRD--ADTITSITNSDTPIFNRKYLGD------EYHVNLAGSNYPNRREAEHSV 225 (301)
T ss_pred HHhc--CCEEEEecCCCCcEecHHHcCC------CceEEecCCCCCCcccCCHHH
Confidence 9987 999997643 234889999873 2345554 3333578888863
No 215
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=81.83 E-value=4.2 Score=41.20 Aligned_cols=102 Identities=18% Similarity=0.263 Sum_probs=63.0
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc-CcccCCCccCCchhchhhhhhc-CCCCCHHHHHhcCC
Q 012398 332 FLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK-GLIVSSRKESLQHFKKPWAHEH-APIKSLLDAVKAIK 409 (464)
Q Consensus 332 iv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~-GLl~~~r~~~l~~~k~~fa~~~-~~~~~L~e~v~~vk 409 (464)
|.|+|||..|..+|-.++. .|+ ...+.++|.+ .++.... .+|.+....+.... ....+ .+.+++
T Consensus 1 i~iiGaG~VG~~~a~~l~~-----~~~-----~~el~l~D~~~~~~~g~~-~DL~~~~~~~~~~~i~~~~~-~~~l~~-- 66 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIA-----KGL-----ASELVLVDVNEEKAKGDA-LDLSHASAFLATGTIVRGGD-YADAAD-- 66 (300)
T ss_pred CEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCccHHHHHH-HhHHHhccccCCCeEEECCC-HHHhCC--
Confidence 5789999999999976654 365 2579999973 2211111 12433322221100 00134 457776
Q ss_pred CcEEEeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEEcCCCC
Q 012398 410 PTMLMGTSGVG---KT-----------FTKEVVEAMASFNEKPVIFALSNPT 447 (464)
Q Consensus 410 ptvLIG~S~~~---g~-----------ft~evv~~Ma~~~erPIIFaLSNPt 447 (464)
+|++|=+.+.+ |- +=+++++.+.++++.-+|+-.|||.
T Consensus 67 aDiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sNP~ 118 (300)
T cd00300 67 ADIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNPV 118 (300)
T ss_pred CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccChH
Confidence 89888544432 21 1246788888999999999999997
No 216
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=81.00 E-value=3.1 Score=41.47 Aligned_cols=32 Identities=28% Similarity=0.446 Sum_probs=26.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
.+|.|+|+|..|.+||..+... |. +++++|.+
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~-----G~-------~V~l~d~~ 35 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART-----GY-------DVTIVDVS 35 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc-----CC-------eEEEEeCC
Confidence 5799999999999999988653 53 58888864
No 217
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=80.98 E-value=3.4 Score=36.48 Aligned_cols=35 Identities=31% Similarity=0.303 Sum_probs=26.8
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccC
Q 012398 330 QTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKG 374 (464)
Q Consensus 330 ~riv~~GA-GsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~G 374 (464)
.||+++|+ |-.|-.|++.+.+. .|+ +=...+|++.
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~----~~~------~lv~~v~~~~ 36 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILES----PGF------ELVGAVDRKP 36 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHS----TTE------EEEEEEETTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhc----CCc------EEEEEEecCC
Confidence 48999999 99999999998762 233 3356778876
No 218
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=80.96 E-value=1.6 Score=49.51 Aligned_cols=40 Identities=25% Similarity=0.347 Sum_probs=34.5
Q ss_pred CCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCc
Q 012398 325 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGL 375 (464)
Q Consensus 325 ~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GL 375 (464)
.+|++.||+|+|||.-|..+|+.|+.+ |+ ++|.+||..-+
T Consensus 334 ekL~~~kVLIvGaGGLGs~VA~~La~~-----GV------g~ItlVD~D~V 373 (664)
T TIGR01381 334 ERYSQLKVLLLGAGTLGCNVARCLIGW-----GV------RHITFVDNGKV 373 (664)
T ss_pred HHHhcCeEEEECCcHHHHHHHHHHHHc-----CC------CeEEEEcCCEE
Confidence 567899999999999999999999875 64 68999998643
No 219
>PRK08618 ornithine cyclodeaminase; Validated
Probab=80.94 E-value=18 Score=37.14 Aligned_cols=102 Identities=14% Similarity=0.208 Sum_probs=61.0
Q ss_pred CcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhhhc----CCCCCHHH
Q 012398 328 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEH----APIKSLLD 403 (464)
Q Consensus 328 ~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~~----~~~~~L~e 403 (464)
...+++|+|+|..|-.++..+... .+ .++|.++|+. .++ .....+.+.... ....++++
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~----~~------~~~v~v~~r~----~~~---a~~~~~~~~~~~~~~~~~~~~~~~ 188 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAV----RD------IERVRVYSRT----FEK---AYAFAQEIQSKFNTEIYVVNSADE 188 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhc----CC------ccEEEEECCC----HHH---HHHHHHHHHHhcCCcEEEeCCHHH
Confidence 456899999999998887666542 23 3678888874 222 222222222111 12467999
Q ss_pred HHhcCCCcEEEeccCCC-CCCCHHHHHHHHcCCCCcEEEEcC-CCCCCCCCCHH
Q 012398 404 AVKAIKPTMLMGTSGVG-KTFTKEVVEAMASFNEKPVIFALS-NPTSQSECTAE 455 (464)
Q Consensus 404 ~v~~vkptvLIG~S~~~-g~ft~evv~~Ma~~~erPIIFaLS-NPt~~~E~tpe 455 (464)
+++. .|++|-++..+ ..|+ ++++ +..-|.++- +--.+.|+.++
T Consensus 189 ~~~~--aDiVi~aT~s~~p~i~-~~l~------~G~hV~~iGs~~p~~~E~~~~ 233 (325)
T PRK08618 189 AIEE--ADIIVTVTNAKTPVFS-EKLK------KGVHINAVGSFMPDMQELPSE 233 (325)
T ss_pred HHhc--CCEEEEccCCCCcchH-HhcC------CCcEEEecCCCCcccccCCHH
Confidence 9986 99999665433 2555 5553 344566663 32246777763
No 220
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=80.83 E-value=30 Score=35.01 Aligned_cols=35 Identities=17% Similarity=0.147 Sum_probs=24.4
Q ss_pred CcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcc
Q 012398 328 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDS 372 (464)
Q Consensus 328 ~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~ 372 (464)
..++++|+|+|..|+..+.++..++ | ..+++.+|+
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~----g------~~~vi~~~~ 197 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIY----P------ESKLVVFGK 197 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhc----C------CCcEEEEeC
Confidence 4789999999988887766665421 3 135777775
No 221
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=80.63 E-value=6.5 Score=40.43 Aligned_cols=123 Identities=20% Similarity=0.262 Sum_probs=84.8
Q ss_pred eeeeeecCCCccHHHHHHHHc--CCCceeec--------CccchhHHHHHHHHHHHHHhCCCCCcceEEEeCcch-HHHH
Q 012398 275 VLIQFEDFANHNAFELLSKYS--SSHLVFND--------DIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGE-AGTG 343 (464)
Q Consensus 275 ~lIq~EDf~~~~af~iL~ryr--~~~~~FnD--------DiQGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGs-Ag~G 343 (464)
.++||==.+.-+...+|+.-- +++==||- ...+--.+|-+|++.-++-.+.+|.+.++||+|.+. .|--
T Consensus 92 IlVQlPLp~hld~~~il~~I~p~KDVDG~hp~N~g~L~~~~~~~~PCTp~gi~~ll~~~~i~l~Gk~~vVVGrS~iVGkP 171 (283)
T COG0190 92 ILVQLPLPKHLDEQKLLQAIDPEKDVDGFHPYNLGKLAQGEPGFLPCTPAGIMTLLEEYGIDLRGKNVVVVGRSNIVGKP 171 (283)
T ss_pred EEEeCCCCCCCCHHHHHhhcCcCCCccccChhHhcchhcCCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcCcHH
Confidence 556665555555556665542 22222222 133455788999999999999999999999999874 5777
Q ss_pred HHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhhhcCCCCCHHHHHhcCCCcEEEeccCCCCCC
Q 012398 344 IAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTF 423 (464)
Q Consensus 344 iA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~f 423 (464)
+|.+|+.+ +. .+-+|.|+ .++|.+.++. +|++|-.-+.++.|
T Consensus 172 la~lL~~~-----na-------TVtvcHs~------------------------T~~l~~~~k~--ADIvv~AvG~p~~i 213 (283)
T COG0190 172 LALLLLNA-----NA-------TVTVCHSR------------------------TKDLASITKN--ADIVVVAVGKPHFI 213 (283)
T ss_pred HHHHHHhC-----CC-------EEEEEcCC------------------------CCCHHHHhhh--CCEEEEecCCcccc
Confidence 77777652 32 34455443 1357777887 99999999999999
Q ss_pred CHHHHHHHHcCCCCcEEE
Q 012398 424 TKEVVEAMASFNEKPVIF 441 (464)
Q Consensus 424 t~evv~~Ma~~~erPIIF 441 (464)
+.|||+ +..+|+
T Consensus 214 ~~d~vk------~gavVI 225 (283)
T COG0190 214 KADMVK------PGAVVI 225 (283)
T ss_pred cccccc------CCCEEE
Confidence 999997 445654
No 222
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=80.52 E-value=11 Score=37.00 Aligned_cols=47 Identities=30% Similarity=0.417 Sum_probs=30.5
Q ss_pred HHHHHHHHHhCCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcc
Q 012398 314 AGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDS 372 (464)
Q Consensus 314 Agll~Alk~~g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~ 372 (464)
+..+.|++..+. ..+.+++|+|+|+.|...+.+... .|. ++++.+|+
T Consensus 107 ~ta~~al~~~~~-~~g~~VlV~G~G~vG~~~~~~ak~-----~G~------~~Vi~~~~ 153 (280)
T TIGR03366 107 ATVMAALEAAGD-LKGRRVLVVGAGMLGLTAAAAAAA-----AGA------ARVVAADP 153 (280)
T ss_pred HHHHHHHHhccC-CCCCEEEEECCCHHHHHHHHHHHH-----cCC------CEEEEECC
Confidence 344556665544 378899999999877776555432 353 46777764
No 223
>PRK06823 ornithine cyclodeaminase; Validated
Probab=80.25 E-value=10 Score=38.99 Aligned_cols=104 Identities=13% Similarity=0.156 Sum_probs=67.0
Q ss_pred CcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhhhc---CCCCCHHHH
Q 012398 328 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEH---APIKSLLDA 404 (464)
Q Consensus 328 ~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~~---~~~~~L~e~ 404 (464)
.-.++.++|+|.-+-..++.++.. .. .++|++.|+. .++ ...+...+.+.. ....+.+++
T Consensus 127 d~~~l~iiG~G~qA~~~~~a~~~v----~~------i~~v~v~~r~----~~~---a~~~~~~~~~~~~~v~~~~~~~~a 189 (315)
T PRK06823 127 HVSAIGIVGTGIQARMQLMYLKNV----TD------CRQLWVWGRS----ETA---LEEYRQYAQALGFAVNTTLDAAEV 189 (315)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhc----CC------CCEEEEECCC----HHH---HHHHHHHHHhcCCcEEEECCHHHH
Confidence 457999999999988888776653 12 3678887773 222 222222221111 113689999
Q ss_pred HhcCCCcEEEecc-CCCCCCCHHHHHHHHcCCCCcEEEEcCCCC-CCCCCCHHH
Q 012398 405 VKAIKPTMLMGTS-GVGKTFTKEVVEAMASFNEKPVIFALSNPT-SQSECTAEE 456 (464)
Q Consensus 405 v~~vkptvLIG~S-~~~g~ft~evv~~Ma~~~erPIIFaLSNPt-~~~E~tped 456 (464)
++. +||++-++ +...+|..++++ +.-.|-+...-+ .+.|+.++-
T Consensus 190 v~~--ADIV~taT~s~~P~~~~~~l~------~G~hi~~iGs~~p~~~Eld~~~ 235 (315)
T PRK06823 190 AHA--ANLIVTTTPSREPLLQAEDIQ------PGTHITAVGADSPGKQELDAEL 235 (315)
T ss_pred hcC--CCEEEEecCCCCceeCHHHcC------CCcEEEecCCCCcccccCCHHH
Confidence 987 99999764 333489999986 455677776432 477988864
No 224
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=80.09 E-value=2.2 Score=44.12 Aligned_cols=45 Identities=27% Similarity=0.358 Sum_probs=41.9
Q ss_pred cchhHHHHHHHHHHHHHhCCCCCcceEEEeCc-chHHHHHHHHHHH
Q 012398 306 QGTASVVLAGILSALKLVGGTLADQTFLFLGA-GEAGTGIAELIAL 350 (464)
Q Consensus 306 QGTaaV~LAgll~Alk~~g~~l~d~riv~~GA-GsAg~GiA~ll~~ 350 (464)
-+||-++.-+++.+..-+|..|++..+.|+|| |..|.+||+.|..
T Consensus 144 s~Tayaa~r~Vl~~~~~lGidlsqatvaivGa~G~Ia~~Iar~la~ 189 (351)
T COG5322 144 SHTAYAACRQVLKHFAQLGIDLSQATVAIVGATGDIASAIARWLAP 189 (351)
T ss_pred ccchHHHHHHHHHHHHHhCcCHHHCeEEEecCCchHHHHHHHHhcc
Confidence 47999999999999999999999999999998 9999999999854
No 225
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=80.01 E-value=9.2 Score=45.69 Aligned_cols=25 Identities=28% Similarity=0.601 Sum_probs=20.9
Q ss_pred CCcceEEEeCcchHHHHHHHHHHHH
Q 012398 327 LADQTFLFLGAGEAGTGIAELIALE 351 (464)
Q Consensus 327 l~d~riv~~GAGsAg~GiA~ll~~a 351 (464)
+.-.+|||.|+|-+|.|.++++...
T Consensus 201 v~P~~vVi~G~G~Vg~gA~~i~~~l 225 (1042)
T PLN02819 201 ICPLVFVFTGSGNVSQGAQEIFKLL 225 (1042)
T ss_pred CCCeEEEEeCCchHHHHHHHHHhhc
Confidence 3358999999999999999988643
No 226
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=80.01 E-value=3.5 Score=41.59 Aligned_cols=103 Identities=17% Similarity=0.153 Sum_probs=56.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCc-----hhchhhhhh-cCCCCCHHH
Q 012398 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQ-----HFKKPWAHE-HAPIKSLLD 403 (464)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~-----~~k~~fa~~-~~~~~~L~e 403 (464)
.||.|+|+|..|..+|..+..+ | .+++++|+..-...-+...+. ..+..+... -....++ +
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~-----G-------~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~ 69 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAA-----G-------ADVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-A 69 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhc-----C-------CcEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccCh-h
Confidence 4799999999999999998763 4 358888874211000000000 000000000 0001234 4
Q ss_pred HHhcCCCcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEEcCCCCCC
Q 012398 404 AVKAIKPTMLMGTSGVGKTFTKEVVEAMASF-NEKPVIFALSNPTSQ 449 (464)
Q Consensus 404 ~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~-~erPIIFaLSNPt~~ 449 (464)
+++. +|++|=+.. . -..+++++.+.++ .+..+|..+.|....
T Consensus 70 ~~~~--~D~vil~vk-~-~~~~~~~~~l~~~~~~~~iii~~~nG~~~ 112 (341)
T PRK08229 70 ALAT--ADLVLVTVK-S-AATADAAAALAGHARPGAVVVSFQNGVRN 112 (341)
T ss_pred hccC--CCEEEEEec-C-cchHHHHHHHHhhCCCCCEEEEeCCCCCc
Confidence 5553 788774433 2 2357888888764 345677778886643
No 227
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=79.96 E-value=4.1 Score=40.58 Aligned_cols=32 Identities=34% Similarity=0.518 Sum_probs=26.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
+||.|+|+|..|.+||..+..+ |. +++++|.+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~-----G~-------~V~l~d~~ 36 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALA-----GY-------DVLLNDVS 36 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHC-----CC-------eEEEEeCC
Confidence 5899999999999999988653 53 57788864
No 228
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=79.83 E-value=2.9 Score=33.57 Aligned_cols=35 Identities=23% Similarity=0.393 Sum_probs=29.1
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCccc
Q 012398 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIV 377 (464)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~ 377 (464)
|++|+|+|..|+-+|..+... | .++.++++..-+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~-----g-------~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAEL-----G-------KEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHT-----T-------SEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHh-----C-------cEEEEEeccchhh
Confidence 799999999999999988542 4 5789999877766
No 229
>PRK06153 hypothetical protein; Provisional
Probab=79.64 E-value=2.2 Score=45.61 Aligned_cols=38 Identities=29% Similarity=0.490 Sum_probs=33.9
Q ss_pred CCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 325 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 325 ~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
.+|++.||+|+|+|..|.-|+++|+.. |+ ++|.++|.+
T Consensus 172 ~kL~~~~VaIVG~GG~GS~Va~~LAR~-----GV------geI~LVD~D 209 (393)
T PRK06153 172 AKLEGQRIAIIGLGGTGSYILDLVAKT-----PV------REIHLFDGD 209 (393)
T ss_pred HHHhhCcEEEEcCCccHHHHHHHHHHc-----CC------CEEEEECCC
Confidence 678899999999999999999999874 64 689999987
No 230
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=79.15 E-value=2.6 Score=40.99 Aligned_cols=35 Identities=20% Similarity=0.246 Sum_probs=26.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcc
Q 012398 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLI 376 (464)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl 376 (464)
-+|+|+|||.||+..|..|.. .|+ ++.++|++.-.
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~-----~G~-------~v~i~E~~~~~ 36 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALAR-----AGI-------DVTIIERRPDP 36 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHH-----TTC-------EEEEEESSSSC
T ss_pred ceEEEECCCHHHHHHHHHHHh-----ccc-------ccccchhcccc
Confidence 479999999999999998876 365 48889987554
No 231
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=78.99 E-value=6.5 Score=43.10 Aligned_cols=34 Identities=32% Similarity=0.474 Sum_probs=26.9
Q ss_pred CcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 328 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 328 ~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
.-+||.|+|+|..|.|||..++.+ |. .++++|.+
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~a-----G~-------~V~l~d~~ 37 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASA-----GH-------QVLLYDIR 37 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhC-----CC-------eEEEEeCC
Confidence 346899999999999999998763 54 57777754
No 232
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=78.93 E-value=2.6 Score=38.52 Aligned_cols=30 Identities=20% Similarity=0.364 Sum_probs=21.0
Q ss_pred EEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 333 LFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 333 v~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
+|+|||.||+..|..|.+ .|+ +++.++|+.
T Consensus 1 ~IIGaG~aGl~~a~~l~~-----~g~------~~v~v~e~~ 30 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLE-----RGI------DPVVVLERN 30 (203)
T ss_dssp EEE--SHHHHHHHHHHHH-----TT---------EEEEESS
T ss_pred CEECcCHHHHHHHHHHHh-----CCC------CcEEEEeCC
Confidence 689999999999988865 365 348899987
No 233
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=78.92 E-value=10 Score=38.12 Aligned_cols=34 Identities=21% Similarity=0.231 Sum_probs=26.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
.+|.|+|+|..|..+|..+... |. ..+++++|++
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~-----g~-----~~~V~~~dr~ 40 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRL-----GL-----AGEIVGADRS 40 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc-----CC-----CcEEEEEECC
Confidence 6899999999999999988653 43 1368888875
No 234
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=78.91 E-value=2.1 Score=39.10 Aligned_cols=92 Identities=15% Similarity=0.206 Sum_probs=52.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhhh-cCCCCCHHHHHhcC
Q 012398 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE-HAPIKSLLDAVKAI 408 (464)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~-~~~~~~L~e~v~~v 408 (464)
.||-|+|.|..|.+||+.|... |. +++..|+. .++ . +++... .....|+.|+++.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~-----g~-------~v~~~d~~----~~~---~----~~~~~~g~~~~~s~~e~~~~- 57 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKA-----GY-------EVTVYDRS----PEK---A----EALAEAGAEVADSPAEAAEQ- 57 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHT-----TT-------EEEEEESS----HHH---H----HHHHHTTEEEESSHHHHHHH-
T ss_pred CEEEEEchHHHHHHHHHHHHhc-----CC-------eEEeeccc----hhh---h----hhhHHhhhhhhhhhhhHhhc-
Confidence 5899999999999999999653 53 57777752 111 1 223322 2234689999998
Q ss_pred CCcEEEeccCCCCCCCHHHHHH--H-HcCCCCcEEEEcCCCC
Q 012398 409 KPTMLMGTSGVGKTFTKEVVEA--M-ASFNEKPVIFALSNPT 447 (464)
Q Consensus 409 kptvLIG~S~~~g~ft~evv~~--M-a~~~erPIIFaLSNPt 447 (464)
.|++|-+-..+ .=.++++.. + +...+..||.=+|+-.
T Consensus 58 -~dvvi~~v~~~-~~v~~v~~~~~i~~~l~~g~iiid~sT~~ 97 (163)
T PF03446_consen 58 -ADVVILCVPDD-DAVEAVLFGENILAGLRPGKIIIDMSTIS 97 (163)
T ss_dssp -BSEEEE-SSSH-HHHHHHHHCTTHGGGS-TTEEEEE-SS--
T ss_pred -ccceEeecccc-hhhhhhhhhhHHhhccccceEEEecCCcc
Confidence 68877542212 234455554 3 3334666777777544
No 235
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=78.32 E-value=4.4 Score=44.07 Aligned_cols=98 Identities=16% Similarity=0.182 Sum_probs=62.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhh-h--cCCCCCHHHHHh
Q 012398 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAH-E--HAPIKSLLDAVK 406 (464)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~-~--~~~~~~L~e~v~ 406 (464)
.+|-|+|.|..|.++|..|... |. ++++.|++ .++ ..+..+.-.. . .....++.|+++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~-----G~-------~V~v~dr~----~~~---~~~l~~~~~~~g~~i~~~~s~~e~v~ 62 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASR-----GF-------KISVYNRT----YEK---TEEFVKKAKEGNTRVKGYHTLEELVN 62 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHC-----CC-------eEEEEeCC----HHH---HHHHHHhhhhcCCcceecCCHHHHHh
Confidence 3689999999999999999763 53 57777763 221 1111111000 0 112468999998
Q ss_pred cC-CCcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEEcCCCC
Q 012398 407 AI-KPTMLMGTSGVGKTFTKEVVEAMASF-NEKPVIFALSNPT 447 (464)
Q Consensus 407 ~v-kptvLIG~S~~~g~ft~evv~~Ma~~-~erPIIFaLSNPt 447 (464)
.. +|+++| +.-+++...+++++.+... .+..||.=+||=.
T Consensus 63 ~l~~~d~Ii-l~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~ 104 (470)
T PTZ00142 63 SLKKPRKVI-LLIKAGEAVDETIDNLLPLLEKGDIIIDGGNEW 104 (470)
T ss_pred cCCCCCEEE-EEeCChHHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence 65 588655 3444556788888776643 4577888898844
No 236
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=78.23 E-value=15 Score=38.30 Aligned_cols=90 Identities=17% Similarity=0.212 Sum_probs=57.8
Q ss_pred HhCCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhh-hhhcCCCCC
Q 012398 322 LVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPW-AHEHAPIKS 400 (464)
Q Consensus 322 ~~g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~f-a~~~~~~~~ 400 (464)
..|..+...++-|+|.|..|..+|+.+. ++ |+ +|...|++.. ++..+.+ ++. .+
T Consensus 139 ~~~~~l~gktvGIiG~GrIG~avA~r~~-~F----gm-------~v~y~~~~~~---------~~~~~~~~~~y----~~ 193 (324)
T COG1052 139 LLGFDLRGKTLGIIGLGRIGQAVARRLK-GF----GM-------KVLYYDRSPN---------PEAEKELGARY----VD 193 (324)
T ss_pred ccccCCCCCEEEEECCCHHHHHHHHHHh-cC----CC-------EEEEECCCCC---------hHHHhhcCcee----cc
Confidence 3456788999999999999999999987 43 54 4665665432 1111111 111 23
Q ss_pred HHHHHhcCCCcEEEeccC----CCCCCCHHHHHHHHcCCCCcEEE
Q 012398 401 LLDAVKAIKPTMLMGTSG----VGKTFTKEVVEAMASFNEKPVIF 441 (464)
Q Consensus 401 L~e~v~~vkptvLIG~S~----~~g~ft~evv~~Ma~~~erPIIF 441 (464)
|.|.++. .|+++-..- .-++|+++.++.|. +..+|.
T Consensus 194 l~ell~~--sDii~l~~Plt~~T~hLin~~~l~~mk---~ga~lV 233 (324)
T COG1052 194 LDELLAE--SDIISLHCPLTPETRHLINAEELAKMK---PGAILV 233 (324)
T ss_pred HHHHHHh--CCEEEEeCCCChHHhhhcCHHHHHhCC---CCeEEE
Confidence 8888886 888874421 12578888888885 344544
No 237
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=78.14 E-value=5.2 Score=41.93 Aligned_cols=82 Identities=18% Similarity=0.359 Sum_probs=48.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCc--ccCCCccCCchhchhhhhh---cCC---CCCH
Q 012398 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGL--IVSSRKESLQHFKKPWAHE---HAP---IKSL 401 (464)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GL--l~~~r~~~l~~~k~~fa~~---~~~---~~~L 401 (464)
.+|.|+|||+=|+++|..+.+. |- .=++|..|.+=. |..+|. ..+|... ++. ..+|
T Consensus 2 ~kI~ViGaGswGTALA~~la~n-----g~-----~V~lw~r~~~~~~~i~~~~~------N~~yLp~i~lp~~l~at~Dl 65 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARN-----GH-----EVRLWGRDEEIVAEINETRE------NPKYLPGILLPPNLKATTDL 65 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhc-----CC-----eeEEEecCHHHHHHHHhcCc------CccccCCccCCcccccccCH
Confidence 5899999999999999999763 41 236787764311 111111 1122221 111 2578
Q ss_pred HHHHhcCCCcEE-EeccCCCCCCCHHHHHHHH
Q 012398 402 LDAVKAIKPTML-MGTSGVGKTFTKEVVEAMA 432 (464)
Q Consensus 402 ~e~v~~vkptvL-IG~S~~~g~ft~evv~~Ma 432 (464)
.+++++ .|++ +++++ -+-+++++.|.
T Consensus 66 ~~a~~~--ad~iv~avPs---~~~r~v~~~l~ 92 (329)
T COG0240 66 AEALDG--ADIIVIAVPS---QALREVLRQLK 92 (329)
T ss_pred HHHHhc--CCEEEEECCh---HHHHHHHHHHh
Confidence 888886 5544 44444 35667777764
No 238
>PRK06270 homoserine dehydrogenase; Provisional
Probab=78.07 E-value=19 Score=37.26 Aligned_cols=105 Identities=18% Similarity=0.215 Sum_probs=64.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHH---HHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhc-hhhhhhcC---------
Q 012398 330 QTFLFLGAGEAGTGIAELIALE---MSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFK-KPWAHEHA--------- 396 (464)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~a---~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k-~~fa~~~~--------- 396 (464)
.||.++|.|..|.+++++|.+. +.++.|+. .+=.-++|++|.+.+.+. ++..+ ..++....
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~----~~vvai~d~~~~~~~~~G--i~~~~~~~~~~~~~~~~~~~~~~ 76 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLD----LKVVAIADSSGSAIDPDG--LDLELALKVKEETGKLADYPEGG 76 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCC----EEEEEEEeCCCcccCcCC--CCHHHHHHHHhccCCcccCcccc
Confidence 5899999999999999998652 22222331 122446799998887653 33221 22332211
Q ss_pred CCCCHHHHHhcCCCcEEEeccCCC---CCCCHHHHHHHHcCCCCcEEE
Q 012398 397 PIKSLLDAVKAIKPTMLMGTSGVG---KTFTKEVVEAMASFNEKPVIF 441 (464)
Q Consensus 397 ~~~~L~e~v~~vkptvLIG~S~~~---g~ft~evv~~Ma~~~erPIIF 441 (464)
...++.|+++...+||+|=++... +-...++++...+ +..+||.
T Consensus 77 ~~~d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~-~GkhVVt 123 (341)
T PRK06270 77 GEISGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALE-RGKHVVT 123 (341)
T ss_pred ccCCHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHH-CCCEEEc
Confidence 113889999888899999776531 2233555444333 3577876
No 239
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=77.07 E-value=3.5 Score=41.54 Aligned_cols=22 Identities=45% Similarity=0.628 Sum_probs=19.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHH
Q 012398 330 QTFLFLGAGEAGTGIAELIALE 351 (464)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~a 351 (464)
.||.|+|||..|.|||..++.+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~ 27 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARA 27 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhC
Confidence 3899999999999999988753
No 240
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=76.87 E-value=19 Score=37.92 Aligned_cols=109 Identities=18% Similarity=0.241 Sum_probs=68.9
Q ss_pred chhHHHHHHHHHHHHHh--------------------CCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCe
Q 012398 307 GTASVVLAGILSALKLV--------------------GGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKK 366 (464)
Q Consensus 307 GTaaV~LAgll~Alk~~--------------------g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~ 366 (464)
-||-++++-+|.++|-. |..++++||.|+|.|+.|..||+.|..+ | ..
T Consensus 120 ~vAd~~~~lil~~~R~~~~g~~~~~~g~w~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL~~F-----g-------~~ 187 (336)
T KOG0069|consen 120 DVADLAVSLLLALLRRFSEGNEMVRNGGWGWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRLKPF-----G-------CV 187 (336)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhcCCccccCCccccccccCCEEEEecCcHHHHHHHHhhhhc-----c-------ce
Confidence 47778888888888742 3568899999999999999999999763 2 13
Q ss_pred EEEEcccCcccCCCccC-CchhchhhhhhcCCCCCHHHHHhcCCCcEEEeccCC----CCCCCHHHHHHHHcCCCCcEEE
Q 012398 367 IWLVDSKGLIVSSRKES-LQHFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGV----GKTFTKEVVEAMASFNEKPVIF 441 (464)
Q Consensus 367 i~lvD~~GLl~~~r~~~-l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~----~g~ft~evv~~Ma~~~erPIIF 441 (464)
|. +..|... ....+..+++ .-++.|...+ .|++|=..-- -++|+++.+..|. +.-+|.
T Consensus 188 i~--------y~~r~~~~~~~~~~~~~~----~~d~~~~~~~--sD~ivv~~pLt~~T~~liNk~~~~~mk---~g~vlV 250 (336)
T KOG0069|consen 188 IL--------YHSRTQLPPEEAYEYYAE----FVDIEELLAN--SDVIVVNCPLTKETRHLINKKFIEKMK---DGAVLV 250 (336)
T ss_pred ee--------eecccCCchhhHHHhccc----ccCHHHHHhh--CCEEEEecCCCHHHHHHhhHHHHHhcC---CCeEEE
Confidence 33 3333211 1223333433 2467777765 7877743311 1478888888885 444555
Q ss_pred EcC
Q 012398 442 ALS 444 (464)
Q Consensus 442 aLS 444 (464)
-.+
T Consensus 251 N~a 253 (336)
T KOG0069|consen 251 NTA 253 (336)
T ss_pred ecc
Confidence 433
No 241
>PRK06932 glycerate dehydrogenase; Provisional
Probab=76.82 E-value=12 Score=38.33 Aligned_cols=87 Identities=14% Similarity=0.182 Sum_probs=54.3
Q ss_pred CCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhhhcCCCCCHHH
Q 012398 324 GGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLD 403 (464)
Q Consensus 324 g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~L~e 403 (464)
+..|.++++.|+|-|..|-.+|+++.. -|+ +++.+|+..- .... ....+|.|
T Consensus 142 ~~~l~gktvgIiG~G~IG~~va~~l~~-----fg~-------~V~~~~~~~~------~~~~----------~~~~~l~e 193 (314)
T PRK06932 142 ITDVRGSTLGVFGKGCLGTEVGRLAQA-----LGM-------KVLYAEHKGA------SVCR----------EGYTPFEE 193 (314)
T ss_pred ccccCCCEEEEECCCHHHHHHHHHHhc-----CCC-------EEEEECCCcc------cccc----------cccCCHHH
Confidence 346899999999999999999998853 265 4666665310 0000 01236777
Q ss_pred HHhcCCCcEEEecc----CCCCCCCHHHHHHHHcCCCCcEEEEc
Q 012398 404 AVKAIKPTMLMGTS----GVGKTFTKEVVEAMASFNEKPVIFAL 443 (464)
Q Consensus 404 ~v~~vkptvLIG~S----~~~g~ft~evv~~Ma~~~erPIIFaL 443 (464)
+++. .|+++=.- ..-|.|+++.+..|. +..++.=.
T Consensus 194 ll~~--sDiv~l~~Plt~~T~~li~~~~l~~mk---~ga~lIN~ 232 (314)
T PRK06932 194 VLKQ--ADIVTLHCPLTETTQNLINAETLALMK---PTAFLINT 232 (314)
T ss_pred HHHh--CCEEEEcCCCChHHhcccCHHHHHhCC---CCeEEEEC
Confidence 7776 77776221 112577777777774 44455533
No 242
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=76.79 E-value=6.5 Score=36.80 Aligned_cols=36 Identities=28% Similarity=0.408 Sum_probs=25.8
Q ss_pred CCCcceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 326 TLADQTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 326 ~l~d~riv~~GA-GsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
++++.+++|.|| |..|..+++.+++ .|. ++++++++
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l~~-----~G~-------~V~~~~r~ 38 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRFAA-----EGA-------RVVVTDRN 38 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHH-----CCC-------EEEEEeCC
Confidence 467789999997 5667777776653 352 58888875
No 243
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=76.66 E-value=5.4 Score=43.88 Aligned_cols=48 Identities=27% Similarity=0.432 Sum_probs=34.5
Q ss_pred HHHHHHHHH----------hCCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 314 AGILSALKL----------VGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 314 Agll~Alk~----------~g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
.|++.+++- .+..+++.+++|+|||.||-+|+..|.+ .| . +|+++|+.
T Consensus 354 ~G~~~~l~~~~~~~~~~~~~~~~~~~k~vlIlGaGGagrAia~~L~~-----~G------~-~V~i~nR~ 411 (529)
T PLN02520 354 IGAISAIEDGLRASGSSPASGSPLAGKLFVVIGAGGAGKALAYGAKE-----KG------A-RVVIANRT 411 (529)
T ss_pred HHHHHHHHhhhcccccccccccCCCCCEEEEECCcHHHHHHHHHHHH-----CC------C-EEEEEcCC
Confidence 456666653 1346888999999999888888777764 35 2 68888873
No 244
>PLN02527 aspartate carbamoyltransferase
Probab=76.47 E-value=98 Score=31.94 Aligned_cols=171 Identities=18% Similarity=0.259 Sum_probs=93.8
Q ss_pred HHHHHHHHHHhcCCCeeeeeecCCCccHHHHHHHHcCCCceee--cCccchhHHHHHHHHHHHHHhCCCCCcceEEEeCc
Q 012398 260 LQEFMTAVKQNYGEKVLIQFEDFANHNAFELLSKYSSSHLVFN--DDIQGTASVVLAGILSALKLVGGTLADQTFLFLGA 337 (464)
Q Consensus 260 idefv~av~~~fGp~~lIq~EDf~~~~af~iL~ryr~~~~~Fn--DDiQGTaaV~LAgll~Alk~~g~~l~d~riv~~GA 337 (464)
+.+.+..+. +| .++ |-+-.+......++ .+| .++||.| |+...=-+=+||=++.-.+..| ++++.||+++|.
T Consensus 86 ~~Dta~vls-~y-~D~-iviR~~~~~~~~~~-a~~-~~vPVINa~~g~~~HPtQ~LaDl~Ti~e~~g-~l~g~kva~vGD 159 (306)
T PLN02527 86 LEDTIRTVE-GY-SDI-IVLRHFESGAARRA-AAT-AEIPVINAGDGPGQHPTQALLDVYTIQREIG-RLDGIKVGLVGD 159 (306)
T ss_pred HHHHHHHHH-Hh-CcE-EEEECCChhHHHHH-HHh-CCCCEEECCCCCCCChHHHHHHHHHHHHHhC-CcCCCEEEEECC
Confidence 344444444 45 332 33444544443332 333 4799999 4333334456777777666666 599999999998
Q ss_pred chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhhhcC-C---CCCHHHHHhcCCCcEE
Q 012398 338 GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHA-P---IKSLLDAVKAIKPTML 413 (464)
Q Consensus 338 GsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~~~-~---~~~L~e~v~~vkptvL 413 (464)
+.=+ -+++-++.++.+..|+ .+.++-.+|+- +++....+++... . ..++.||+++ +||+
T Consensus 160 ~~~~-rv~~Sl~~~~~~~~g~-------~v~~~~P~~~~-------~~~~~~~~~~~~g~~~~~~~d~~~a~~~--aDvv 222 (306)
T PLN02527 160 LANG-RTVRSLAYLLAKYEDV-------KIYFVAPDVVK-------MKDDIKDYLTSKGVEWEESSDLMEVASK--CDVL 222 (306)
T ss_pred CCCC-hhHHHHHHHHHhcCCC-------EEEEECCCccC-------CCHHHHHHHHHcCCEEEEEcCHHHHhCC--CCEE
Confidence 7421 2455554444331243 57777777662 1222223343311 1 2689999998 9999
Q ss_pred EeccCCCCCCCH--H-HH----------HHHHcCCCCcEEE-EcCCCCCCCCCCHHH
Q 012398 414 MGTSGVGKTFTK--E-VV----------EAMASFNEKPVIF-ALSNPTSQSECTAEE 456 (464)
Q Consensus 414 IG~S~~~g~ft~--e-vv----------~~Ma~~~erPIIF-aLSNPt~~~E~tped 456 (464)
.-.+.+..-+.+ + .. +.|+...++.||+ || | ..-|++.+-
T Consensus 223 yt~~~q~e~~~~~~~~~~~~~~~y~v~~~ll~~a~~~~ivmHcl--P-Rg~Ei~~~V 276 (306)
T PLN02527 223 YQTRIQRERFGERIDLYEAARGKYIVDKKVMDVLPKHAVVMHPL--P-RLDEITTDV 276 (306)
T ss_pred EECCcchhhhcchHHHHHHhCCCceECHHHHhccCCCCEEECCC--C-CcccccHHH
Confidence 987754222211 1 11 2244434666776 33 3 446777653
No 245
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=76.26 E-value=3.8 Score=42.44 Aligned_cols=36 Identities=17% Similarity=0.325 Sum_probs=27.9
Q ss_pred CcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 328 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 328 ~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
+..||||+|+|.||+..|+.|... |. ..+|.++|..
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~-----~~-----~~~I~li~~e 37 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQ-----GF-----TGELHLFSDE 37 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhh-----CC-----CCCEEEeCCC
Confidence 457899999999999999998753 42 2367787765
No 246
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=75.92 E-value=4.5 Score=43.91 Aligned_cols=31 Identities=23% Similarity=0.303 Sum_probs=25.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcc
Q 012398 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDS 372 (464)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~ 372 (464)
.||.|+|+|..|.+||..++.+ |. ++.++|.
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~-----G~-------~V~v~D~ 35 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLA-----GI-------DVAVFDP 35 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhC-----CC-------eEEEEeC
Confidence 3799999999999999999763 54 4667776
No 247
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=75.89 E-value=17 Score=36.66 Aligned_cols=93 Identities=14% Similarity=0.175 Sum_probs=57.4
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhhh-cCCCCCHHHHHhcCC
Q 012398 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE-HAPIKSLLDAVKAIK 409 (464)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~-~~~~~~L~e~v~~vk 409 (464)
+|.|+|.|..|..+|+-+... |. ++++.|++. ++ .. +++.. .....++.|+++..+
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~-----g~-------~v~v~dr~~----~~---~~----~~~~~g~~~~~s~~~~~~~~~ 58 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLRED-----GH-------EVVGYDVNQ----EA---VD----VAGKLGITARHSLEELVSKLE 58 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhC-----CC-------EEEEEECCH----HH---HH----HHHHCCCeecCCHHHHHHhCC
Confidence 689999999999999988652 43 577777631 11 11 12211 122357888887643
Q ss_pred -CcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEEcCCCC
Q 012398 410 -PTMLMGTSGVGKTFTKEVVEAMASF-NEKPVIFALSNPT 447 (464)
Q Consensus 410 -ptvLIG~S~~~g~ft~evv~~Ma~~-~erPIIFaLSNPt 447 (464)
+|++|= +.+.....++++..+... .+..+|.=+|+-.
T Consensus 59 ~advVi~-~vp~~~~~~~v~~~i~~~l~~g~ivid~st~~ 97 (299)
T PRK12490 59 APRTIWV-MVPAGEVTESVIKDLYPLLSPGDIVVDGGNSR 97 (299)
T ss_pred CCCEEEE-EecCchHHHHHHHHHhccCCCCCEEEECCCCC
Confidence 577653 333334667777666543 3567888888643
No 248
>PLN02688 pyrroline-5-carboxylate reductase
Probab=75.75 E-value=13 Score=36.23 Aligned_cols=34 Identities=26% Similarity=0.319 Sum_probs=25.1
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEE-cc
Q 012398 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLV-DS 372 (464)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lv-D~ 372 (464)
||.|+|.|..|.++|+-|++. |.- -..+|+++ |+
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~-----g~~---~~~~i~v~~~r 36 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVAS-----GVV---PPSRISTADDS 36 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHC-----CCC---CcceEEEEeCC
Confidence 689999999999999998753 420 12367777 55
No 249
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=75.74 E-value=13 Score=37.23 Aligned_cols=35 Identities=26% Similarity=0.303 Sum_probs=26.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcC-CChhhhcCeEEEEccc
Q 012398 330 QTFLFLGAGEAGTGIAELIALEMSKQTK-APIEEARKKIWLVDSK 373 (464)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~a~~~~~G-~s~~eA~~~i~lvD~~ 373 (464)
+||.|+|+|..|.++|..|... | ++ ..+++++|++
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~-----g~~~----~~~V~~~~r~ 37 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLET-----EVAT----PEEIILYSSS 37 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHC-----CCCC----cccEEEEeCC
Confidence 4799999999999999988653 4 21 2467777763
No 250
>PRK07877 hypothetical protein; Provisional
Probab=75.63 E-value=8.5 Score=44.25 Aligned_cols=105 Identities=20% Similarity=0.160 Sum_probs=68.9
Q ss_pred CCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCC--C----ccCCchhchhhhhh----
Q 012398 325 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSS--R----KESLQHFKKPWAHE---- 394 (464)
Q Consensus 325 ~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~--r----~~~l~~~k~~fa~~---- 394 (464)
.+|++.||+|+|+| .|..+|..|+.+ |+ ..+|.++|.+=+=..+ | ..++-..|..-|+.
T Consensus 103 ~~L~~~~V~IvG~G-lGs~~a~~Lara-----Gv-----vG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~ 171 (722)
T PRK07877 103 ERLGRLRIGVVGLS-VGHAIAHTLAAE-----GL-----CGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAE 171 (722)
T ss_pred HHHhcCCEEEEEec-HHHHHHHHHHHc-----cC-----CCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHH
Confidence 57899999999999 899999888764 53 2689999987432211 0 01121122222211
Q ss_pred -cCC---------C--CCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 012398 395 -HAP---------I--KSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALS 444 (464)
Q Consensus 395 -~~~---------~--~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaLS 444 (464)
.+. + .++.+.+++ .|++|-++- +.=++-+|...|.....|+|++.+
T Consensus 172 inp~i~v~~~~~~i~~~n~~~~l~~--~DlVvD~~D--~~~~R~~ln~~a~~~~iP~i~~~~ 229 (722)
T PRK07877 172 LDPYLPVEVFTDGLTEDNVDAFLDG--LDVVVEECD--SLDVKVLLREAARARRIPVLMATS 229 (722)
T ss_pred HCCCCEEEEEeccCCHHHHHHHhcC--CCEEEECCC--CHHHHHHHHHHHHHcCCCEEEEcC
Confidence 111 1 257777765 899988765 234777888888888999999885
No 251
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=75.55 E-value=13 Score=38.84 Aligned_cols=121 Identities=13% Similarity=0.138 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHhCCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhh
Q 012398 312 VLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPW 391 (464)
Q Consensus 312 ~LAgll~Alk~~g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~f 391 (464)
++|+.++|=++..+.. ..+.|+|+|.-+-..+ +++....+ .++|++.|++ . +....+-..+
T Consensus 115 aAasavAa~~LA~~da--~~laiIGaG~qA~~ql----~a~~~v~~------~~~I~i~~r~----~---~~~e~~a~~l 175 (330)
T COG2423 115 AAASAVAAKYLARKDA--STLAIIGAGAQARTQL----EALKAVRD------IREIRVYSRD----P---EAAEAFAARL 175 (330)
T ss_pred HHHHHHHHHHhccCCC--cEEEEECCcHHHHHHH----HHHHhhCC------ccEEEEEcCC----H---HHHHHHHHHH
Confidence 3445566655555533 4788999998655444 44433223 3567776663 1 1111121222
Q ss_pred hhh----cCCCCCHHHHHhcCCCcEEEeccC-CCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCCCCHHHHh
Q 012398 392 AHE----HAPIKSLLDAVKAIKPTMLMGTSG-VGKTFTKEVVEAMASFNEKPVIFALSNPTSQSECTAEEAY 458 (464)
Q Consensus 392 a~~----~~~~~~L~e~v~~vkptvLIG~S~-~~g~ft~evv~~Ma~~~erPIIFaLSNPt~~~E~tpedA~ 458 (464)
.+. -....|+++||++ +|++|.++. ....|+.+||+. .-=|.-.=||+-.+-|+.+|-..
T Consensus 176 ~~~~~~~v~a~~s~~~av~~--aDiIvt~T~s~~Pil~~~~l~~-----G~hI~aiGad~p~k~Eld~e~l~ 240 (330)
T COG2423 176 RKRGGEAVGAADSAEEAVEG--ADIVVTATPSTEPVLKAEWLKP-----GTHINAIGADAPGKRELDPEVLA 240 (330)
T ss_pred HhhcCccceeccCHHHHhhc--CCEEEEecCCCCCeecHhhcCC-----CcEEEecCCCCcccccCCHHHHH
Confidence 222 2345799999998 999999852 234899999972 22233444577789999987543
No 252
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=75.24 E-value=2.7 Score=42.93 Aligned_cols=38 Identities=32% Similarity=0.411 Sum_probs=33.6
Q ss_pred CCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 325 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 325 ~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
++|++.+|+|+|+|..|.-||+.|+.+ |+ ++|.++|.+
T Consensus 15 ~kL~~s~VLIvG~gGLG~EiaKnLala-----GV------g~itI~D~d 52 (286)
T cd01491 15 KKLQKSNVLISGLGGLGVEIAKNLILA-----GV------KSVTLHDTK 52 (286)
T ss_pred HHHhcCcEEEEcCCHHHHHHHHHHHHc-----CC------CeEEEEcCC
Confidence 468899999999999999999999875 64 689999987
No 253
>PRK06046 alanine dehydrogenase; Validated
Probab=75.03 E-value=20 Score=36.87 Aligned_cols=103 Identities=15% Similarity=0.156 Sum_probs=65.1
Q ss_pred CcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhhh----cCCCCCHHH
Q 012398 328 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE----HAPIKSLLD 403 (464)
Q Consensus 328 ~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~----~~~~~~L~e 403 (464)
.-.++.|+|+|..|...++.+... .+ .++++++|++ .++ .......+.+. .....++.+
T Consensus 128 ~~~~vgiiG~G~qa~~h~~al~~~----~~------i~~v~v~~r~----~~~---~~~~~~~~~~~~~~~v~~~~~~~~ 190 (326)
T PRK06046 128 DSKVVGIIGAGNQARTQLLALSEV----FD------LEEVRVYDRT----KSS---AEKFVERMSSVVGCDVTVAEDIEE 190 (326)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhh----CC------ceEEEEECCC----HHH---HHHHHHHHHhhcCceEEEeCCHHH
Confidence 357999999999988877766432 12 4688888885 121 22222222211 111357899
Q ss_pred HHhcCCCcEEEeccC-CCCCCCHHHHHHHHcCCCCcEEEEc-CCCCCCCCCCHHH
Q 012398 404 AVKAIKPTMLMGTSG-VGKTFTKEVVEAMASFNEKPVIFAL-SNPTSQSECTAEE 456 (464)
Q Consensus 404 ~v~~vkptvLIG~S~-~~g~ft~evv~~Ma~~~erPIIFaL-SNPt~~~E~tped 456 (464)
+++ +|+++-++. ...+|..++++ +.-.|-++ |+-..+.|+.++-
T Consensus 191 ~l~---aDiVv~aTps~~P~~~~~~l~------~g~hV~~iGs~~p~~~El~~~~ 236 (326)
T PRK06046 191 ACD---CDILVTTTPSRKPVVKAEWIK------EGTHINAIGADAPGKQELDPEI 236 (326)
T ss_pred Hhh---CCEEEEecCCCCcEecHHHcC------CCCEEEecCCCCCccccCCHHH
Confidence 885 899887653 23488999885 33356666 4544688999874
No 254
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=74.90 E-value=23 Score=36.91 Aligned_cols=138 Identities=15% Similarity=0.277 Sum_probs=81.1
Q ss_pred HHHHHHHHHHhcCCCeeeeeecCCCccHHHHHHHHcCCCceeec-CccchhHHHHHHHHHHHHHhCCCCCcceEEEeCcc
Q 012398 260 LQEFMTAVKQNYGEKVLIQFEDFANHNAFELLSKYSSSHLVFND-DIQGTASVVLAGILSALKLVGGTLADQTFLFLGAG 338 (464)
Q Consensus 260 idefv~av~~~fGp~~lIq~EDf~~~~af~iL~ryr~~~~~FnD-DiQGTaaV~LAgll~Alk~~g~~l~d~riv~~GAG 338 (464)
+.+.++.+.. | .++++ +-.+... +.+.+.+| .++||+|= |-.-=-+=+||=++.-.+..|++|++.||+++|-+
T Consensus 91 l~DTarvls~-y-~D~iv-~R~~~~~-~~~~~a~~-~~vPVINa~~~~~HPtQaL~Dl~Ti~e~~g~~l~gl~ia~vGD~ 165 (334)
T PRK01713 91 MKDTARVLGR-M-YDAIE-YRGFKQS-IVNELAEY-AGVPVFNGLTDEFHPTQMLADVLTMIENCDKPLSEISYVYIGDA 165 (334)
T ss_pred HHHHHHHHHH-h-CCEEE-EEcCchH-HHHHHHHh-CCCCEEECCCCCCChHHHHHHHHHHHHHcCCCcCCcEEEEECCC
Confidence 3444444444 5 33332 3333322 23333333 47999993 22222344677777776777778999999999987
Q ss_pred hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhhhcC----CCCCHHHHHhcCCCcEEE
Q 012398 339 EAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHA----PIKSLLDAVKAIKPTMLM 414 (464)
Q Consensus 339 sAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~~~----~~~~L~e~v~~vkptvLI 414 (464)
.- ++++-++.++.+ .|+ ++.++-.+++.-.+ + .-+.-+.+++... ...++.+++++ +||+.
T Consensus 166 ~~--~v~~Sl~~~~~~-~g~-------~v~~~~P~~~~p~~--~-~~~~~~~~~~~~g~~~~~~~d~~~a~~~--aDvVy 230 (334)
T PRK01713 166 RN--NMGNSLLLIGAK-LGM-------DVRICAPKALLPEA--S-LVEMCEKFAKESGARITVTDDIDKAVKG--VDFVH 230 (334)
T ss_pred cc--CHHHHHHHHHHH-cCC-------EEEEECCchhcCCH--H-HHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCEEE
Confidence 53 377877666655 465 58888887773321 1 1111233443211 13689999998 99998
Q ss_pred ecc
Q 012398 415 GTS 417 (464)
Q Consensus 415 G~S 417 (464)
-.+
T Consensus 231 t~~ 233 (334)
T PRK01713 231 TDV 233 (334)
T ss_pred Ecc
Confidence 753
No 255
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=74.69 E-value=3.6 Score=39.61 Aligned_cols=31 Identities=26% Similarity=0.393 Sum_probs=25.2
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
+|+|+|||.||+..|..|.. .|+ ++.++|+.
T Consensus 2 dvvIIG~G~aGl~aA~~l~~-----~g~-------~v~lie~~ 32 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAAR-----ANL-------KTLIIEGM 32 (300)
T ss_pred cEEEECCCHHHHHHHHHHHH-----CCC-------CEEEEecc
Confidence 68999999999999998754 353 58888864
No 256
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=74.58 E-value=9.5 Score=38.07 Aligned_cols=32 Identities=41% Similarity=0.745 Sum_probs=26.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
.||.|+|+|..|.+||..++.+ | .+++++|.+
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~-----G-------~~V~~~d~~ 36 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAA-----G-------MDVWLLDSD 36 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-----C-------CeEEEEeCC
Confidence 4799999999999999998763 5 367888853
No 257
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=74.57 E-value=8.8 Score=41.74 Aligned_cols=95 Identities=14% Similarity=0.173 Sum_probs=61.0
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhhh--cCCCCCHHHHHhcC
Q 012398 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE--HAPIKSLLDAVKAI 408 (464)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~--~~~~~~L~e~v~~v 408 (464)
.|-|+|.|..|.++|..|.+. |. ++++.|+. ..+ .....+.+... .....++.|+++.+
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~-----G~-------~V~v~drt----~~~---~~~l~~~~~~g~~~~~~~s~~e~v~~l 61 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADH-----GF-------TVSVYNRT----PEK---TDEFLAEHAKGKKIVGAYSIEEFVQSL 61 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhc-----CC-------eEEEEeCC----HHH---HHHHHhhccCCCCceecCCHHHHHhhc
Confidence 378999999999999999763 53 57777763 111 22221111100 11235788888654
Q ss_pred -CCcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEEcCC
Q 012398 409 -KPTMLMGTSGVGKTFTKEVVEAMASF-NEKPVIFALSN 445 (464)
Q Consensus 409 -kptvLIG~S~~~g~ft~evv~~Ma~~-~erPIIFaLSN 445 (464)
+|+++| ++-+++...++++..+..+ .+..||.=+||
T Consensus 62 ~~~dvIi-l~v~~~~~v~~Vi~~l~~~L~~g~iIID~gn 99 (467)
T TIGR00873 62 ERPRKIM-LMVKAGAPVDAVINQLLPLLEKGDIIIDGGN 99 (467)
T ss_pred CCCCEEE-EECCCcHHHHHHHHHHHhhCCCCCEEEECCC
Confidence 588666 4445567788888887654 46779998987
No 258
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=74.15 E-value=15 Score=35.86 Aligned_cols=33 Identities=15% Similarity=0.203 Sum_probs=24.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcc
Q 012398 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDS 372 (464)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~ 372 (464)
||.|+|+|..|.++++-|... |.. .+.+++.|+
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~-----g~~----~~~i~v~~r 34 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTS-----PAD----VSEIIVSPR 34 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhC-----CCC----hheEEEECC
Confidence 689999999999999988653 532 345666665
No 259
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=74.15 E-value=16 Score=41.38 Aligned_cols=152 Identities=15% Similarity=0.157 Sum_probs=86.3
Q ss_pred hhHHHHHHHHHHHHHH-hcCCCeeeeeecCCCc----cHHHHHHHHcCCCceeecCccchhHHHHHHHHHHHHHhCCCCC
Q 012398 254 QEYAELLQEFMTAVKQ-NYGEKVLIQFEDFANH----NAFELLSKYSSSHLVFNDDIQGTASVVLAGILSALKLVGGTLA 328 (464)
Q Consensus 254 ~~y~~~idefv~av~~-~fGp~~lIq~EDf~~~----~af~iL~ryr~~~~~FnDDiQGTaaV~LAgll~Alk~~g~~l~ 328 (464)
+.|.+.|.|.++++.+ .| .||.+.. =--.+++||..+|--|+-... .++.|..- .+
T Consensus 68 ~~y~~~V~Eli~~L~~nGF-------VrDv~~~~p~~L~~a~lERYaaqI~F~~~fs~----------s~~~rF~~--qR 128 (637)
T TIGR03693 68 APYQKRVFEIGEILYKNGF-------VRDVSQDAPHELESALLDRYAAQIEFIEADAD----------SGALKFEL--SR 128 (637)
T ss_pred HHHHHHHHHHHHHHHhCCc-------eeecccccCCCCCHHHHHHHHHHHHHHHHhcc----------Cchhhhhh--hh
Confidence 3455545555555554 33 4565421 223478999877655543321 12222222 28
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhhh-cC----------C
Q 012398 329 DQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE-HA----------P 397 (464)
Q Consensus 329 d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~-~~----------~ 397 (464)
+.||+++|.|..|..+.-.|+. .|+ .+|..+|.+=..+ +.. .+-+. .+-|++ .+ .
T Consensus 129 ~akVlVlG~Gg~~s~lv~sL~~-----sG~------~~I~~vd~D~v~S-Nln-RIgEl-~e~A~~~n~~v~v~~i~~~~ 194 (637)
T TIGR03693 129 NAKILAAGSGDFLTKLVRSLID-----SGF------PRFHAIVTDAEEH-ALD-RIHEL-AEIAEETDDALLVQEIDFAE 194 (637)
T ss_pred cccEEEEecCchHHHHHHHHHh-----cCC------CcEEEEeccccch-hhh-HHHHH-HHHHHHhCCCCceEeccCCc
Confidence 9999999999988888777765 475 5788886654422 111 01122 334443 11 1
Q ss_pred CCCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEE
Q 012398 398 IKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVI 440 (464)
Q Consensus 398 ~~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPII 440 (464)
..++.++++. .|++|=+|..+-.-.-.++-+-+....+|.|
T Consensus 195 ~~dl~ev~~~--~DiVi~vsDdy~~~~Lr~lN~acvkegk~~I 235 (637)
T TIGR03693 195 DQHLHEAFEP--ADWVLYVSDNGDIDDLHALHAFCKEEGKGFI 235 (637)
T ss_pred chhHHHhhcC--CcEEEEECCCCChHHHHHHHHHHHHcCCCeE
Confidence 3479999987 7999999886633334444444444454444
No 260
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=73.55 E-value=14 Score=38.07 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=21.9
Q ss_pred CCcceEEEeCcchHHHHHHHHHHH
Q 012398 327 LADQTFLFLGAGEAGTGIAELIAL 350 (464)
Q Consensus 327 l~d~riv~~GAGsAg~GiA~ll~~ 350 (464)
|++.+|.|+|+|..|-++|.-|.+
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~ 24 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRD 24 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHH
Confidence 578899999999999999999876
No 261
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=73.25 E-value=10 Score=38.31 Aligned_cols=106 Identities=16% Similarity=0.107 Sum_probs=59.3
Q ss_pred CCcceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCch-hchhhhh-hcCCCCCHHH
Q 012398 327 LADQTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQH-FKKPWAH-EHAPIKSLLD 403 (464)
Q Consensus 327 l~d~riv~~GA-GsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~-~k~~fa~-~~~~~~~L~e 403 (464)
+++.+|+|.|| |-.|..+++.|++ .| .+++.+|++.--.....+.+.. .+..+.. +-.+..++.+
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~-----~G-------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 69 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLE-----LG-------AEVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRK 69 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHH-----CC-------CEEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHHHHH
Confidence 35678999996 8888888888875 24 3577777652100000000000 0001111 1112235778
Q ss_pred HHhcCCCcEEEeccCCCCC----------------CCHHHHHHHHcCC-CCcEEEEcC
Q 012398 404 AVKAIKPTMLMGTSGVGKT----------------FTKEVVEAMASFN-EKPVIFALS 444 (464)
Q Consensus 404 ~v~~vkptvLIG~S~~~g~----------------ft~evv~~Ma~~~-erPIIFaLS 444 (464)
+++..+||++|=+.+.+.. .+..+++.|.+.+ .+.+||.=|
T Consensus 70 ~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS 127 (349)
T TIGR02622 70 AIAEFKPEIVFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTS 127 (349)
T ss_pred HHhhcCCCEEEECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 8888889999977764311 1345567666544 457998644
No 262
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=73.06 E-value=14 Score=36.40 Aligned_cols=103 Identities=18% Similarity=0.222 Sum_probs=58.0
Q ss_pred CcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCcc--CCchhchhhhhhcC------CCC
Q 012398 328 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKE--SLQHFKKPWAHEHA------PIK 399 (464)
Q Consensus 328 ~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~--~l~~~k~~fa~~~~------~~~ 399 (464)
++-||.|+|+|..|.+++.-|.+. |.- ..++++.+|++- .+.. ..++.+. ...+.+ +..
T Consensus 2 ~~mkI~iIG~G~mG~ai~~~l~~~-----~~~---~~~~i~~~~~~~----~~~~~~~~~~~~~-~~~~~D~Vilavkp~ 68 (260)
T PTZ00431 2 ENIRVGFIGLGKMGSALAYGIENS-----NII---GKENIYYHTPSK----KNTPFVYLQSNEE-LAKTCDIIVLAVKPD 68 (260)
T ss_pred CCCEEEEECccHHHHHHHHHHHhC-----CCC---CcceEEEECCCh----hcCCeEEeCChHH-HHHhCCEEEEEeCHH
Confidence 456899999999999999988753 321 134688888642 1100 0111111 111100 112
Q ss_pred CHHHHHhcCC----CcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCC
Q 012398 400 SLLDAVKAIK----PTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPT 447 (464)
Q Consensus 400 ~L~e~v~~vk----ptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaLSNPt 447 (464)
.+.++++.++ ++.+ +|-..| ++.+.++.+-. ..++++-.+.|..
T Consensus 69 ~~~~vl~~i~~~l~~~~i--IS~~aG-i~~~~l~~~~~-~~~~vvr~mPn~p 116 (260)
T PTZ00431 69 LAGKVLLEIKPYLGSKLL--ISICGG-LNLKTLEEMVG-VEAKIVRVMPNTP 116 (260)
T ss_pred HHHHHHHHHHhhccCCEE--EEEeCC-ccHHHHHHHcC-CCCeEEEECCCch
Confidence 3444444443 3433 565554 77888888753 3456888888865
No 263
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=72.56 E-value=4.7 Score=41.74 Aligned_cols=35 Identities=29% Similarity=0.415 Sum_probs=26.9
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcc
Q 012398 332 FLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLI 376 (464)
Q Consensus 332 iv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl 376 (464)
|+|+|||.||..+|..+.++ ..| .++.++|++--.
T Consensus 2 viIvGaGpAGlslA~~l~~~---~~g-------~~Vllid~~~~~ 36 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADA---RPG-------LSVLLIDPKPKP 36 (374)
T ss_pred EEEECCcHHHHHHHHHHHhc---CCC-------CEEEEEcCCccc
Confidence 78999999999999998443 123 479999986444
No 264
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=72.38 E-value=8.7 Score=43.81 Aligned_cols=41 Identities=7% Similarity=0.135 Sum_probs=27.3
Q ss_pred hcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCC
Q 012398 406 KAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTS 448 (464)
Q Consensus 406 ~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaLSNPt~ 448 (464)
+.++|+++|..++.. +.-.-+.+..++-+|=|.+=..||..
T Consensus 416 ~~~~~~~ilasNTSs--l~i~~la~~~~~p~r~~g~Hff~P~~ 456 (715)
T PRK11730 416 QKVREDTILASNTST--ISISLLAKALKRPENFCGMHFFNPVH 456 (715)
T ss_pred hhCCCCcEEEEcCCC--CCHHHHHhhcCCCccEEEEecCCccc
Confidence 445799999877753 55444444444555668888899873
No 265
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=72.19 E-value=5.1 Score=39.73 Aligned_cols=99 Identities=19% Similarity=0.253 Sum_probs=58.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCC--C-----ccCCchhchhhhh----hc-C--
Q 012398 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSS--R-----KESLQHFKKPWAH----EH-A-- 396 (464)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~--r-----~~~l~~~k~~fa~----~~-~-- 396 (464)
||+++|+|..|.-+++.|+.+ |+ ++|.++|.+=+=..+ | .+++-..|..-|. .. +
T Consensus 1 kVlvvG~GGlG~eilk~La~~-----Gv------g~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v 69 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALM-----GF------GQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNC 69 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCC
Confidence 689999999999999999764 64 689999987332111 1 0112122222211 10 1
Q ss_pred -------CC---CCH-HHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 012398 397 -------PI---KSL-LDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALS 444 (464)
Q Consensus 397 -------~~---~~L-~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaLS 444 (464)
.+ .++ .+-+++ .|++|.+..- .-+..++-.++.....|+|.+=+
T Consensus 70 ~i~~~~~~i~~~~~~~~~f~~~--~DvVi~a~Dn--~~aR~~ln~~c~~~~iplI~~g~ 124 (234)
T cd01484 70 KVVPYQNKVGPEQDFNDTFFEQ--FHIIVNALDN--IIARRYVNGMLIFLIVPLIESGT 124 (234)
T ss_pred EEEEEeccCChhhhchHHHHhC--CCEEEECCCC--HHHHHHHHHHHHHcCCCEEEEcc
Confidence 11 111 234554 8888865442 33567788888777888887643
No 266
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=71.76 E-value=4.4 Score=42.30 Aligned_cols=20 Identities=35% Similarity=0.514 Sum_probs=18.1
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 012398 331 TFLFLGAGEAGTGIAELIAL 350 (464)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~ 350 (464)
+|+|+|||.||...|..+..
T Consensus 2 ~VvIVGaGPAG~~aA~~la~ 21 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLAS 21 (398)
T ss_pred eEEEECCcHHHHHHHHHHHh
Confidence 69999999999999988865
No 267
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=71.64 E-value=17 Score=38.11 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=22.3
Q ss_pred CCCcceEEEeCcchHHHHHHHHHHH
Q 012398 326 TLADQTFLFLGAGEAGTGIAELIAL 350 (464)
Q Consensus 326 ~l~d~riv~~GAGsAg~GiA~ll~~ 350 (464)
.|++.+|.|+|.|+.|.++|..|.+
T Consensus 14 ~L~gktIgIIG~GsmG~AlA~~L~~ 38 (330)
T PRK05479 14 LIKGKKVAIIGYGSQGHAHALNLRD 38 (330)
T ss_pred hhCCCEEEEEeeHHHHHHHHHHHHH
Confidence 4678899999999999999999865
No 268
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=71.33 E-value=5.3 Score=41.49 Aligned_cols=32 Identities=34% Similarity=0.417 Sum_probs=28.2
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
||+++|+|.-|.-+|+.|+.+ |+ ++|.++|.+
T Consensus 1 kVLIvGaGGLGs~vA~~La~a-----GV------g~ItlvD~D 32 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGW-----GV------RHITFVDSG 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CC------CeEEEECCC
Confidence 689999999999999999875 64 689999986
No 269
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=70.93 E-value=6.4 Score=42.45 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=21.5
Q ss_pred CCCcceEEEeCcchHHHHHHHHHHH
Q 012398 326 TLADQTFLFLGAGEAGTGIAELIAL 350 (464)
Q Consensus 326 ~l~d~riv~~GAGsAg~GiA~ll~~ 350 (464)
+....+|+|+|||+||+..|+.+.+
T Consensus 7 ~~~~~~VaIIGAG~aGL~aA~~l~~ 31 (461)
T PLN02172 7 PINSQHVAVIGAGAAGLVAARELRR 31 (461)
T ss_pred CCCCCCEEEECCcHHHHHHHHHHHh
Confidence 3456789999999999999998865
No 270
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=70.82 E-value=4.9 Score=41.39 Aligned_cols=20 Identities=30% Similarity=0.486 Sum_probs=17.8
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 012398 331 TFLFLGAGEAGTGIAELIAL 350 (464)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~ 350 (464)
.|+|+|||.||...|..|.+
T Consensus 2 DVvIVGaGpAG~~aA~~La~ 21 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLAR 21 (388)
T ss_pred eEEEECCCHHHHHHHHHHHh
Confidence 48999999999999988865
No 271
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=70.40 E-value=11 Score=32.34 Aligned_cols=88 Identities=15% Similarity=0.182 Sum_probs=51.8
Q ss_pred CcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhhhcCCCCCHHHHHhcCCCcEEEe
Q 012398 336 GAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIKPTMLMG 415 (464)
Q Consensus 336 GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG 415 (464)
|.|..|.+++++|...-.. .+ .+=+.++|+++++... ............++.+.++..++|++|=
T Consensus 1 G~G~VG~~l~~~l~~~~~~-~~------~~v~~v~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~dvvVE 65 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQER-ID------LEVVGVADRSMLISKD--------WAASFPDEAFTTDLEELIDDPDIDVVVE 65 (117)
T ss_dssp --SHHHHHHHHHHHHTHHH-CE------EEEEEEEESSEEEETT--------HHHHHTHSCEESSHHHHHTHTT-SEEEE
T ss_pred CCCHHHHHHHHHHHhCccc-CC------EEEEEEEECCchhhhh--------hhhhcccccccCCHHHHhcCcCCCEEEE
Confidence 7899999999999763111 01 2346677777444332 1112222233478999999778999999
Q ss_pred ccCCCCCCCHHHHHHHHcCCCCcEEE
Q 012398 416 TSGVGKTFTKEVVEAMASFNEKPVIF 441 (464)
Q Consensus 416 ~S~~~g~ft~evv~~Ma~~~erPIIF 441 (464)
+++ ...+++-+.+.+. +..++|-
T Consensus 66 ~t~-~~~~~~~~~~~L~--~G~~VVt 88 (117)
T PF03447_consen 66 CTS-SEAVAEYYEKALE--RGKHVVT 88 (117)
T ss_dssp -SS-CHHHHHHHHHHHH--TTCEEEE
T ss_pred CCC-chHHHHHHHHHHH--CCCeEEE
Confidence 955 4466666666665 3456664
No 272
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=70.32 E-value=2.9 Score=43.17 Aligned_cols=22 Identities=18% Similarity=0.296 Sum_probs=19.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHH
Q 012398 330 QTFLFLGAGEAGTGIAELIALE 351 (464)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~a 351 (464)
.+|+|+|||-||+..|..|.++
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~ 22 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKK 22 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHh
Confidence 4799999999999999999764
No 273
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=70.20 E-value=4.8 Score=36.57 Aligned_cols=36 Identities=17% Similarity=0.278 Sum_probs=28.1
Q ss_pred EEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCc
Q 012398 333 LFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGL 375 (464)
Q Consensus 333 v~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GL 375 (464)
+|+|+|.+|+.+++.|+... .....-+|.++|.++.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~-------~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQA-------DPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhc-------CCCCCCEEEEEcCCCc
Confidence 48999999999999998753 1123568999999755
No 274
>PRK14852 hypothetical protein; Provisional
Probab=70.04 E-value=19 Score=42.81 Aligned_cols=119 Identities=17% Similarity=0.077 Sum_probs=71.4
Q ss_pred CCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCC--Cc-----cCCchhchhhhhh---
Q 012398 325 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSS--RK-----ESLQHFKKPWAHE--- 394 (464)
Q Consensus 325 ~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~--r~-----~~l~~~k~~fa~~--- 394 (464)
++|++.||+|+|+|..|..||..|+.+ |+ .+|.++|-+=+=..+ |. +++-..|..-+..
T Consensus 328 ~kL~~srVlVvGlGGlGs~ia~~LAra-----GV------G~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~ 396 (989)
T PRK14852 328 RRLLRSRVAIAGLGGVGGIHLMTLART-----GI------GNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERAL 396 (989)
T ss_pred HHHhcCcEEEECCcHHHHHHHHHHHHc-----CC------CeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHH
Confidence 579999999999999999999999874 65 689999986332211 10 1122222222211
Q ss_pred --cC---------CC--CCHHHHHhcCCCcEEEeccCCCCCCCH---HHHHHHHcCCCCcEEEEcC----------CCCC
Q 012398 395 --HA---------PI--KSLLDAVKAIKPTMLMGTSGVGKTFTK---EVVEAMASFNEKPVIFALS----------NPTS 448 (464)
Q Consensus 395 --~~---------~~--~~L~e~v~~vkptvLIG~S~~~g~ft~---evv~~Ma~~~erPIIFaLS----------NPt~ 448 (464)
.+ .+ .++.+.+++ .|++|-..- -|+- ..+-..|.....|+|.+-+ +|-
T Consensus 397 ~INP~v~I~~~~~~I~~en~~~fl~~--~DiVVDa~D---~~~~~~rr~l~~~c~~~~IP~I~ag~~G~~g~v~v~~p~- 470 (989)
T PRK14852 397 SVNPFLDIRSFPEGVAAETIDAFLKD--VDLLVDGID---FFALDIRRRLFNRALELGIPVITAGPLGYSCALLVFMPG- 470 (989)
T ss_pred HHCCCCeEEEEecCCCHHHHHHHhhC--CCEEEECCC---CccHHHHHHHHHHHHHcCCCEEEeeccccCeeEEEEcCC-
Confidence 11 11 246666665 888885443 2332 3444456667899998765 343
Q ss_pred CCCCCHHHHhcccc
Q 012398 449 QSECTAEEAYTWSK 462 (464)
Q Consensus 449 ~~E~tpedA~~wT~ 462 (464)
+...++.|.+.+
T Consensus 471 --~~~~~~~f~~~~ 482 (989)
T PRK14852 471 --GMNFDSYFGIDD 482 (989)
T ss_pred --CCCHHHhCCCCC
Confidence 355666666543
No 275
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=69.86 E-value=25 Score=40.06 Aligned_cols=41 Identities=12% Similarity=0.188 Sum_probs=27.4
Q ss_pred hcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCC
Q 012398 406 KAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTS 448 (464)
Q Consensus 406 ~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaLSNPt~ 448 (464)
+.++|+++|..++.. +.-.-+.+...+-+|=|.+=.-||..
T Consensus 413 ~~~~~~~ilasnTS~--l~i~~la~~~~~p~r~ig~Hff~P~~ 453 (708)
T PRK11154 413 QNCAPHTIFASNTSS--LPIGQIAAAAARPEQVIGLHYFSPVE 453 (708)
T ss_pred hhCCCCcEEEECCCC--CCHHHHHHhcCcccceEEEecCCccc
Confidence 345799999877643 55554544445556668888889874
No 276
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=69.58 E-value=19 Score=36.46 Aligned_cols=105 Identities=15% Similarity=0.203 Sum_probs=63.0
Q ss_pred hCCCCCcceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchh----------chhh
Q 012398 323 VGGTLADQTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHF----------KKPW 391 (464)
Q Consensus 323 ~g~~l~d~riv~~GA-GsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~----------k~~f 391 (464)
++..++..||+|.|| |-.|..+++.|+.. | .+++.+|+. .......+... +..|
T Consensus 9 ~~~~~~~~~vlVtGatGfiG~~lv~~L~~~-----g-------~~V~~~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (348)
T PRK15181 9 TKLVLAPKRWLITGVAGFIGSGLLEELLFL-----N-------QTVIGLDNF---STGYQHNLDDVRTSVSEEQWSRFIF 73 (348)
T ss_pred hcccccCCEEEEECCccHHHHHHHHHHHHC-----C-------CEEEEEeCC---CCcchhhhhhhhhccccccCCceEE
Confidence 445677789999997 99999999888752 4 257777753 11110011110 0111
Q ss_pred hh-hcCCCCCHHHHHhcCCCcEEEeccCCCCC----------------CCHHHHHHHHcCCCCcEEEEcC
Q 012398 392 AH-EHAPIKSLLDAVKAIKPTMLMGTSGVGKT----------------FTKEVVEAMASFNEKPVIFALS 444 (464)
Q Consensus 392 a~-~~~~~~~L~e~v~~vkptvLIG~S~~~g~----------------ft~evv~~Ma~~~erPIIFaLS 444 (464)
-. +-.+...|.+++++ ||++|=+.+.... .|..+++.+.++.-+.+||+=|
T Consensus 74 ~~~Di~d~~~l~~~~~~--~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~v~~SS 141 (348)
T PRK15181 74 IQGDIRKFTDCQKACKN--VDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFTYAAS 141 (348)
T ss_pred EEccCCCHHHHHHHhhC--CCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeec
Confidence 11 11112356777775 9999988765421 2457888888765568998653
No 277
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=69.48 E-value=3.2 Score=42.04 Aligned_cols=37 Identities=11% Similarity=0.238 Sum_probs=27.5
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcc
Q 012398 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLI 376 (464)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl 376 (464)
+|||+|+|.||+..|+.+.... . ...+|.++|++.-.
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~----~-----~~~~I~li~~~~~~ 37 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKP----L-----PGVRVTLINPSSTT 37 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcC----C-----CCCEEEEECCCCCC
Confidence 5899999999999998875421 0 13479999987543
No 278
>KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism]
Probab=69.42 E-value=4.1 Score=45.29 Aligned_cols=36 Identities=28% Similarity=0.384 Sum_probs=31.3
Q ss_pred CCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 327 LADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 327 l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
++..|++++|||+-|++||+-|+.. | .++|.+||.-
T Consensus 338 is~~KcLLLGAGTLGC~VAR~Ll~W-----G------vRhITFvDn~ 373 (669)
T KOG2337|consen 338 ISQTKCLLLGAGTLGCNVARNLLGW-----G------VRHITFVDNG 373 (669)
T ss_pred hhcceeEEecCcccchHHHHHHHhh-----c------cceEEEEecC
Confidence 4678999999999999999999876 4 4689999974
No 279
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=69.28 E-value=6.1 Score=40.57 Aligned_cols=32 Identities=28% Similarity=0.502 Sum_probs=28.3
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
||+++|+|.-|.-+++.|+.+ |+ ++|.++|.+
T Consensus 1 kVlVVGaGGlG~eilknLal~-----Gv------g~I~IvD~D 32 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALS-----GF------RNIHVIDMD 32 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CC------CeEEEECCC
Confidence 689999999999999999874 65 589999987
No 280
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=69.20 E-value=1.2e+02 Score=29.95 Aligned_cols=66 Identities=20% Similarity=0.290 Sum_probs=42.0
Q ss_pred ccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCc--eeeccCCCCCCcccccchh
Q 012398 131 ELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERNIQVIVVTDGE--RILGLGDLGCQGMGIPVGK 208 (464)
Q Consensus 131 e~lpivYTPtVg~ac~~~s~i~r~p~gly~s~~d~g~i~~~l~n~~~~~v~viVVTDG~--rILGLGDlG~~gm~I~~GK 208 (464)
-.+|=+|.+..+..+++. +.+++.+|+.. ..+|.-|.+.--+.-
T Consensus 11 i~~~~~~D~~sA~~~e~~------------------------------G~~ai~~s~~~~~~s~G~pD~~~~~~~e---- 56 (243)
T cd00377 11 LVLPGAWDALSARLAERA------------------------------GFKAIYTSGAGVAASLGLPDGGLLTLDE---- 56 (243)
T ss_pred EEecCCCCHHHHHHHHHc------------------------------CCCEEEeccHHHHHhcCCCCCCcCCHHH----
Confidence 347888888888877773 24677777654 345777766544322
Q ss_pred hhHHhhhCCCCCCceeeEEeecCC
Q 012398 209 LSLYTALGGLRPSACLPITIDVGT 232 (464)
Q Consensus 209 l~Ly~a~gGI~P~~~lPV~LDvgT 232 (464)
+-..+.+|-+...+||..|.-+
T Consensus 57 --~~~~~~~I~~~~~~Pv~~D~~~ 78 (243)
T cd00377 57 --VLAAVRRIARAVDLPVIADADT 78 (243)
T ss_pred --HHHHHHHHHhhccCCEEEEcCC
Confidence 2334445555557999998765
No 281
>PRK06847 hypothetical protein; Provisional
Probab=69.10 E-value=6.2 Score=39.82 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=19.5
Q ss_pred cceEEEeCcchHHHHHHHHHHH
Q 012398 329 DQTFLFLGAGEAGTGIAELIAL 350 (464)
Q Consensus 329 d~riv~~GAGsAg~GiA~ll~~ 350 (464)
..+|+|+|||.||+..|..|..
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~ 25 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRR 25 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHh
Confidence 4589999999999999998865
No 282
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=68.84 E-value=7 Score=37.60 Aligned_cols=35 Identities=14% Similarity=0.247 Sum_probs=28.9
Q ss_pred CCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcc
Q 012398 326 TLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDS 372 (464)
Q Consensus 326 ~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~ 372 (464)
+|++.++||+|+|..|.-.++.|+.+ | .+|++++.
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~-----g-------a~V~VIs~ 41 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKY-----G-------AHIVVISP 41 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEcC
Confidence 58899999999999999999888763 3 36888864
No 283
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=68.62 E-value=26 Score=32.87 Aligned_cols=35 Identities=31% Similarity=0.332 Sum_probs=25.5
Q ss_pred CCcceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 327 LADQTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 327 l~d~riv~~GA-GsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
+++.+++|.|+ |..|..+|+.+++ .|. ++++++++
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~-----~g~-------~v~~~~r~ 37 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAK-----EGA-------KVVIADLN 37 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHH-----CCC-------eEEEEeCC
Confidence 46679999996 7778888887764 352 67887774
No 284
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=68.29 E-value=6.9 Score=40.87 Aligned_cols=36 Identities=14% Similarity=0.203 Sum_probs=27.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCc
Q 012398 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGL 375 (464)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GL 375 (464)
.||||+|+|.||+..|..|.+. |- .-+|.++|++..
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~-----~~-----~~~Vtli~~~~~ 36 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRL-----NK-----ELEITVYEKTDI 36 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHH-----CC-----CCcEEEEECCCc
Confidence 3899999999999999988652 21 136888888754
No 285
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=68.20 E-value=18 Score=40.34 Aligned_cols=88 Identities=24% Similarity=0.285 Sum_probs=60.8
Q ss_pred CcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcc--cCCCccCCchhchhhhhhcCCCCCHHHHH
Q 012398 328 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLI--VSSRKESLQHFKKPWAHEHAPIKSLLDAV 405 (464)
Q Consensus 328 ~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl--~~~r~~~l~~~k~~fa~~~~~~~~L~e~v 405 (464)
.+--++|+|+|..|+|||.-+.. .|+ ++.||+++-+- |.+|..+|-+.-..|+.. .+.+=..|++
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~-----RGl-------~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~-~e~~lvrEal 77 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAG-----RGL-------KVALVEKGDLASGTSSRSTKLIHGGLRYLEQ-YEFSLVREAL 77 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHh-----CCC-------eEEEEecCcccCcccCccccCccchhhhhhh-cchHHHHHHH
Confidence 55679999999999999997764 487 48899988776 344444565555667654 2222244555
Q ss_pred hcCCCcEEEeccCCCCCCCHHHHHHHHcCC--CCcEEEEcCC
Q 012398 406 KAIKPTMLMGTSGVGKTFTKEVVEAMASFN--EKPVIFALSN 445 (464)
Q Consensus 406 ~~vkptvLIG~S~~~g~ft~evv~~Ma~~~--erPIIFaLSN 445 (464)
+. .+++..+|.|. +.|.+||..+
T Consensus 78 ~E-----------------r~vL~~~APH~v~p~~~~lp~~~ 102 (532)
T COG0578 78 AE-----------------REVLLRIAPHLVEPLPFLLPHLP 102 (532)
T ss_pred HH-----------------HHHHHHhCccccccCcCeEeccC
Confidence 43 47888888775 5567888776
No 286
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=68.09 E-value=7.7 Score=35.93 Aligned_cols=26 Identities=15% Similarity=0.248 Sum_probs=23.3
Q ss_pred CCCcceEEEeCcchHHHHHHHHHHHH
Q 012398 326 TLADQTFLFLGAGEAGTGIAELIALE 351 (464)
Q Consensus 326 ~l~d~riv~~GAGsAg~GiA~ll~~a 351 (464)
+|++.+|||+|+|..|.-.++.|+++
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~ 35 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDT 35 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhC
Confidence 58899999999999999999988763
No 287
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=68.04 E-value=22 Score=34.30 Aligned_cols=60 Identities=20% Similarity=0.350 Sum_probs=41.7
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhhhcCCCCCHHHHHhcCC
Q 012398 331 TFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIK 409 (464)
Q Consensus 331 riv~~GA-GsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vk 409 (464)
||+|.|| |-.|..+++.|++ .| .+++.+++. .. ++. ...++.++++..+
T Consensus 1 kilv~G~tG~iG~~l~~~l~~-----~g-------~~v~~~~r~------~~-d~~-----------~~~~~~~~~~~~~ 50 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSP-----EG-------RVVVALTSS------QL-DLT-----------DPEALERLLRAIR 50 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHh-----cC-------CEEEEeCCc------cc-CCC-----------CHHHHHHHHHhCC
Confidence 6899997 9999999988865 24 357777763 11 121 1135778888889
Q ss_pred CcEEEeccCCC
Q 012398 410 PTMLMGTSGVG 420 (464)
Q Consensus 410 ptvLIG~S~~~ 420 (464)
||++|=+.+..
T Consensus 51 ~d~vi~~a~~~ 61 (287)
T TIGR01214 51 PDAVVNTAAYT 61 (287)
T ss_pred CCEEEECCccc
Confidence 99999877643
No 288
>PRK07589 ornithine cyclodeaminase; Validated
Probab=67.81 E-value=26 Score=36.73 Aligned_cols=104 Identities=16% Similarity=0.195 Sum_probs=64.7
Q ss_pred CcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhhhc---CCCCCHHHH
Q 012398 328 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEH---APIKSLLDA 404 (464)
Q Consensus 328 ~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~~---~~~~~L~e~ 404 (464)
.-.++.|+|+|.-+..-++.++... . .++|+++|+. .++ ...+.+.+.+.. ....+++++
T Consensus 128 da~~l~iiGaG~QA~~~l~a~~~vr----~------i~~V~v~~r~----~~~---a~~~~~~~~~~~~~v~~~~~~~~a 190 (346)
T PRK07589 128 DSRTMALIGNGAQSEFQALAFKALL----G------IEEIRLYDID----PAA---TAKLARNLAGPGLRIVACRSVAEA 190 (346)
T ss_pred CCcEEEEECCcHHHHHHHHHHHHhC----C------ceEEEEEeCC----HHH---HHHHHHHHHhcCCcEEEeCCHHHH
Confidence 3478999999998877777666531 2 3678877663 221 222222222111 113689999
Q ss_pred HhcCCCcEEEeccCC-C--CCCCHHHHHHHHcCCCCcEEEEc-CCCCCCCCCCHHH
Q 012398 405 VKAIKPTMLMGTSGV-G--KTFTKEVVEAMASFNEKPVIFAL-SNPTSQSECTAEE 456 (464)
Q Consensus 405 v~~vkptvLIG~S~~-~--g~ft~evv~~Ma~~~erPIIFaL-SNPt~~~E~tped 456 (464)
+++ +||++.++.. . .+|..++++. .--|-++ |+--.+.|+.++-
T Consensus 191 v~~--ADIIvtaT~S~~~~Pvl~~~~lkp------G~hV~aIGs~~p~~~Eld~~~ 238 (346)
T PRK07589 191 VEG--ADIITTVTADKTNATILTDDMVEP------GMHINAVGGDCPGKTELHPDI 238 (346)
T ss_pred Hhc--CCEEEEecCCCCCCceecHHHcCC------CcEEEecCCCCCCcccCCHHH
Confidence 998 9999987642 2 4789999853 2234444 4544578888764
No 289
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=67.57 E-value=7 Score=38.35 Aligned_cols=39 Identities=33% Similarity=0.458 Sum_probs=33.3
Q ss_pred CCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 324 GGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 324 g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
-++|++-||+++|+|.-|..+++.|+.+ |+ .+++++|.+
T Consensus 25 q~~l~~s~vlvvG~GglG~~~~~~la~a-----Gv------g~l~i~D~d 63 (254)
T COG0476 25 QQKLKDSRVLVVGAGGLGSPAAKYLALA-----GV------GKLTIVDFD 63 (254)
T ss_pred HHHHhhCCEEEEecChhHHHHHHHHHHc-----CC------CeEEEEcCC
Confidence 4678899999999999999999999875 54 469999986
No 290
>PRK08163 salicylate hydroxylase; Provisional
Probab=67.37 E-value=6.8 Score=39.94 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=19.4
Q ss_pred cceEEEeCcchHHHHHHHHHHH
Q 012398 329 DQTFLFLGAGEAGTGIAELIAL 350 (464)
Q Consensus 329 d~riv~~GAGsAg~GiA~ll~~ 350 (464)
..+|+|+|||.||+..|-.|..
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~ 25 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALAR 25 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHh
Confidence 4689999999999999988865
No 291
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=67.14 E-value=7.1 Score=39.94 Aligned_cols=103 Identities=17% Similarity=0.184 Sum_probs=56.1
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhh---hcCCCCCHHHHH
Q 012398 329 DQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAH---EHAPIKSLLDAV 405 (464)
Q Consensus 329 d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~---~~~~~~~L~e~v 405 (464)
-.++.|+|+|.-|..-++.+... .+ .++|++.|++ ..+ ...+...+.+ .-....++++++
T Consensus 128 ~~~l~viGaG~QA~~~~~a~~~~----~~------i~~v~v~~r~----~~~---~~~~~~~~~~~~~~v~~~~~~~~av 190 (313)
T PF02423_consen 128 ARTLGVIGAGVQARWHLRALAAV----RP------IKEVRVYSRS----PER---AEAFAARLRDLGVPVVAVDSAEEAV 190 (313)
T ss_dssp --EEEEE--SHHHHHHHHHHHHH----S--------SEEEEE-SS----HHH---HHHHHHHHHCCCTCEEEESSHHHHH
T ss_pred CceEEEECCCHHHHHHHHHHHHh----CC------ceEEEEEccC----hhH---HHHHHHhhccccccceeccchhhhc
Confidence 36899999999988888877654 23 4688888873 221 2222223322 011236899999
Q ss_pred hcCCCcEEEeccCCC---CCCCHHHHHHHHcCCCCcEEEEcCCCC-CCCCCCHHH
Q 012398 406 KAIKPTMLMGTSGVG---KTFTKEVVEAMASFNEKPVIFALSNPT-SQSECTAEE 456 (464)
Q Consensus 406 ~~vkptvLIG~S~~~---g~ft~evv~~Ma~~~erPIIFaLSNPt-~~~E~tped 456 (464)
+. +||++.++... ..|+.++++ +.-.|-++.--+ .+.|+.++-
T Consensus 191 ~~--aDii~taT~s~~~~P~~~~~~l~------~g~hi~~iGs~~~~~~El~~~~ 237 (313)
T PF02423_consen 191 RG--ADIIVTATPSTTPAPVFDAEWLK------PGTHINAIGSYTPGMRELDDEL 237 (313)
T ss_dssp TT--SSEEEE----SSEEESB-GGGS-------TT-EEEE-S-SSTTBESB-HHH
T ss_pred cc--CCEEEEccCCCCCCccccHHHcC------CCcEEEEecCCCCchhhcCHHH
Confidence 98 99999875433 379999987 455777776422 345777653
No 292
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=66.94 E-value=7.1 Score=40.24 Aligned_cols=33 Identities=21% Similarity=0.278 Sum_probs=27.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccC
Q 012398 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKG 374 (464)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~G 374 (464)
.+|+|+|||.+|+.+|..|.+. | .++.++|++-
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~-----g-------~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQR-----G-------YQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeCCC
Confidence 4899999999999999988752 4 3689999864
No 293
>PRK06184 hypothetical protein; Provisional
Probab=66.91 E-value=7.1 Score=41.81 Aligned_cols=34 Identities=24% Similarity=0.373 Sum_probs=26.9
Q ss_pred CcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 328 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 328 ~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
++..|+|+|||.||+..|-.|.. .|+ ++.++|+.
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~-----~Gi-------~v~viE~~ 35 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELAR-----RGV-------SFRLIEKA 35 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEeCC
Confidence 45689999999999999988865 465 36677765
No 294
>PRK07236 hypothetical protein; Provisional
Probab=66.81 E-value=8.1 Score=39.64 Aligned_cols=24 Identities=17% Similarity=0.198 Sum_probs=21.2
Q ss_pred CCcceEEEeCcchHHHHHHHHHHH
Q 012398 327 LADQTFLFLGAGEAGTGIAELIAL 350 (464)
Q Consensus 327 l~d~riv~~GAGsAg~GiA~ll~~ 350 (464)
.+..+|+|+|||.||+..|..|..
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~ 27 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRR 27 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHh
Confidence 456799999999999999999876
No 295
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=66.70 E-value=5.5 Score=42.06 Aligned_cols=33 Identities=18% Similarity=0.263 Sum_probs=26.1
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
||||+|+|.||+..|+.|.+. +- .-+|.++|+.
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~-----~~-----~~~I~li~~~ 35 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRL-----DK-----ESDIIIFEKD 35 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhh-----CC-----CCCEEEEECC
Confidence 899999999999999998642 11 2368888876
No 296
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=66.70 E-value=64 Score=39.38 Aligned_cols=119 Identities=17% Similarity=0.277 Sum_probs=67.4
Q ss_pred HHHHHHHHhcCCCeeeeeecCCCc-------cHHHHHHHHcCCCceeecCccchhHHHHHHHHHHHHHhCCCCCcceEEE
Q 012398 262 EFMTAVKQNYGEKVLIQFEDFANH-------NAFELLSKYSSSHLVFNDDIQGTASVVLAGILSALKLVGGTLADQTFLF 334 (464)
Q Consensus 262 efv~av~~~fGp~~lIq~EDf~~~-------~af~iL~ryr~~~~~FnDDiQGTaaV~LAgll~Alk~~g~~l~d~riv~ 334 (464)
+.+++.-+.|.+..+|| |++.. +-+++..+|.-.+|+.|=|-+|.+.-. .. |
T Consensus 426 ~v~eaaLk~~~G~~IIN--sIs~~~g~~~~~~~~~l~~~yga~vV~m~~de~G~p~t~-e~-----r------------- 484 (1178)
T TIGR02082 426 AVLEAGLKCIQGKCIVN--SISLKDGEERFIETAKLIKEYGAAVVVMAFDEEGQARTA-DR-----K------------- 484 (1178)
T ss_pred HHHHHHHHhcCCCCEEE--eCCCCCCCccHHHHHHHHHHhCCCEEEEecCCCCCCCCH-HH-----H-------------
Confidence 44555555565666666 44442 366777888888888877767754321 11 1
Q ss_pred eCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhhhcCCCCCHHHHHhcC-----C
Q 012398 335 LGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAI-----K 409 (464)
Q Consensus 335 ~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~v-----k 409 (464)
+.|++.+++.+.++.|++ +++|| +|.- +.+-+- . .+ .+..++.. -.++|+.+ .
T Consensus 485 -------~~i~~~~~~~~~~~~Gi~----~edIi-~DP~-i~~v~~-g-~~-e~n~~~~~------~le~i~~ik~~~pg 542 (1178)
T TIGR02082 485 -------IEICKRAYNILTEKVGFP----PEDII-FDPN-ILTIAT-G-IE-EHRRYAIN------FIEAIRWIKEELPD 542 (1178)
T ss_pred -------HHHHHHHHHHHHHHcCCC----HHHEE-EeCC-cccccc-C-ch-HHHHHHHH------HHHHHHHHHHhCCC
Confidence 228888888776547997 35565 7762 222211 1 11 11222221 33555555 4
Q ss_pred CcEEEeccCCCCCC
Q 012398 410 PTMLMGTSGVGKTF 423 (464)
Q Consensus 410 ptvLIG~S~~~g~f 423 (464)
.-+++|+|...=-|
T Consensus 543 ~~~~~GlSN~SFgl 556 (1178)
T TIGR02082 543 AKISGGVSNVSFSF 556 (1178)
T ss_pred CceEEEecccccCC
Confidence 67999999776334
No 297
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=66.58 E-value=15 Score=37.00 Aligned_cols=24 Identities=17% Similarity=0.264 Sum_probs=20.5
Q ss_pred CcceEEEeCcchHHHHHHHHHHHH
Q 012398 328 ADQTFLFLGAGEAGTGIAELIALE 351 (464)
Q Consensus 328 ~d~riv~~GAGsAg~GiA~ll~~a 351 (464)
...||.|+|+|+-|..+|-.|.++
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~ 27 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARA 27 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHC
Confidence 446899999999999999888653
No 298
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=66.55 E-value=5 Score=40.74 Aligned_cols=33 Identities=36% Similarity=0.721 Sum_probs=27.2
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 329 DQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 329 d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
-..|-|+|||-.|.|||+....+ |+ ++|++|++
T Consensus 11 ~~~V~ivGaG~MGSGIAQv~a~s-----g~-------~V~l~d~~ 43 (298)
T KOG2304|consen 11 IKNVAIVGAGQMGSGIAQVAATS-----GL-------NVWLVDAN 43 (298)
T ss_pred ccceEEEcccccchhHHHHHHhc-----CC-------ceEEecCC
Confidence 34678999999999999988763 65 69999985
No 299
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=66.37 E-value=10 Score=36.87 Aligned_cols=33 Identities=24% Similarity=0.356 Sum_probs=27.5
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCc
Q 012398 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGL 375 (464)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GL 375 (464)
.|+|+|||-+|+.+|..|.+ .| .++.++|+..+
T Consensus 1 DvvIIGaGi~G~~~A~~La~-----~G-------~~V~l~e~~~~ 33 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELAR-----RG-------HSVTLLERGDI 33 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHH-----TT-------SEEEEEESSST
T ss_pred CEEEECcCHHHHHHHHHHHH-----CC-------CeEEEEeeccc
Confidence 48999999999999998876 35 37999999833
No 300
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=66.23 E-value=28 Score=37.29 Aligned_cols=110 Identities=10% Similarity=0.060 Sum_probs=62.5
Q ss_pred cceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcC--eEEEE--cccCcccCCCccCCchhchhhhhhcCCCCCHHH
Q 012398 329 DQTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARK--KIWLV--DSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLD 403 (464)
Q Consensus 329 d~riv~~GA-GsAg~GiA~ll~~a~~~~~G~s~~eA~~--~i~lv--D~~GLl~~~r~~~l~~~k~~fa~~~~~~~~L~e 403 (464)
=-||.|+|| |..|..+|-.|+. .|+-.+ -+ -+.|+ |.+-=...+-.-+|.+..-++.....-..+-.+
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~-----~~l~~~--~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~ 116 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLAS-----GEVFGQ--DQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYE 116 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHh-----ccccCC--CCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHH
Confidence 479999999 9999999998865 244110 01 34455 442111111000122222122211000123456
Q ss_pred HHhcCCCcEEEeccCCC---CC-----------CCHHHHHHHHcCC-CCcEEEEcCCCC
Q 012398 404 AVKAIKPTMLMGTSGVG---KT-----------FTKEVVEAMASFN-EKPVIFALSNPT 447 (464)
Q Consensus 404 ~v~~vkptvLIG~S~~~---g~-----------ft~evv~~Ma~~~-erPIIFaLSNPt 447 (464)
.+++ .|++|=+.+.+ |- +=+++.+.+.++. +..||+--|||.
T Consensus 117 ~~kd--aDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPv 173 (387)
T TIGR01757 117 VFED--ADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPC 173 (387)
T ss_pred HhCC--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcH
Confidence 6777 99999665554 31 1256777888855 899999999997
No 301
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=65.92 E-value=6.8 Score=40.21 Aligned_cols=22 Identities=18% Similarity=0.270 Sum_probs=19.7
Q ss_pred cceEEEeCcchHHHHHHHHHHH
Q 012398 329 DQTFLFLGAGEAGTGIAELIAL 350 (464)
Q Consensus 329 d~riv~~GAGsAg~GiA~ll~~ 350 (464)
+.+|+|+|||.||+..|-.|.+
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~ 39 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKD 39 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhc
Confidence 4689999999999999999865
No 302
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=65.87 E-value=7.5 Score=38.59 Aligned_cols=33 Identities=24% Similarity=0.344 Sum_probs=25.8
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 329 DQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 329 d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
+..|+|+|||.||+..|-.+.. .|+ ++.++|++
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~-----~G~-------~V~liEk~ 57 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAK-----AGL-------KVAVFERK 57 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHh-----CCC-------eEEEEecC
Confidence 5679999999999999987754 354 57777765
No 303
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=65.71 E-value=8 Score=40.26 Aligned_cols=37 Identities=19% Similarity=0.277 Sum_probs=29.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccC
Q 012398 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVS 378 (464)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~ 378 (464)
-.|+|+|||.||...|..+.+. |+ ++.++|++..+-.
T Consensus 4 ~DVvIVGaGPAGs~aA~~la~~-----G~-------~VlvlEk~~~~G~ 40 (396)
T COG0644 4 YDVVIVGAGPAGSSAARRLAKA-----GL-------DVLVLEKGSEPGA 40 (396)
T ss_pred eeEEEECCchHHHHHHHHHHHc-----CC-------eEEEEecCCCCCC
Confidence 4689999999999999998764 64 5778888765543
No 304
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=65.57 E-value=27 Score=37.59 Aligned_cols=126 Identities=22% Similarity=0.299 Sum_probs=87.1
Q ss_pred cCccchhHHHHHHHHHHHHHhCCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCcc
Q 012398 303 DDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKE 382 (464)
Q Consensus 303 DDiQGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~ 382 (464)
|.-.||+--++-|++.| |..-+....+|+.|=|--|-|||..+.. .| | ++++.+-+
T Consensus 186 DNrYGtgqS~~DgI~Ra---Tn~liaGK~vVV~GYG~vGrG~A~~~rg-----~G-----A--~ViVtEvD--------- 241 (420)
T COG0499 186 DNRYGTGQSLLDGILRA---TNVLLAGKNVVVAGYGWVGRGIAMRLRG-----MG-----A--RVIVTEVD--------- 241 (420)
T ss_pred ccccccchhHHHHHHhh---hceeecCceEEEecccccchHHHHHhhc-----CC-----C--eEEEEecC---------
Confidence 77799999999998764 5677888999999999999999987743 24 2 44433321
Q ss_pred CCchhchhhhhhcCCCCCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCC-CCCCCCHHH----H
Q 012398 383 SLQHFKKPWAHEHAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPT-SQSECTAEE----A 457 (464)
Q Consensus 383 ~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaLSNPt-~~~E~tped----A 457 (464)
.+..-+..+ +.=..-++.||.+. .|++|=+++--++++.|.++.|. +-.|. +|-- -.-|+..+. +
T Consensus 242 PI~AleA~M--dGf~V~~m~~Aa~~--gDifiT~TGnkdVi~~eh~~~Mk----DgaIl--~N~GHFd~EI~~~~L~~~~ 311 (420)
T COG0499 242 PIRALEAAM--DGFRVMTMEEAAKT--GDIFVTATGNKDVIRKEHFEKMK----DGAIL--ANAGHFDVEIDVAGLEELA 311 (420)
T ss_pred chHHHHHhh--cCcEEEEhHHhhhc--CCEEEEccCCcCccCHHHHHhcc----CCeEE--ecccccceeccHHHHHHhh
Confidence 121111111 22223579999998 99999999999999999999995 44443 3433 346776655 5
Q ss_pred hcccc
Q 012398 458 YTWSK 462 (464)
Q Consensus 458 ~~wT~ 462 (464)
.+|.+
T Consensus 312 ~~~~~ 316 (420)
T COG0499 312 VEKRE 316 (420)
T ss_pred hhHhc
Confidence 56654
No 305
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=65.54 E-value=8.7 Score=39.81 Aligned_cols=99 Identities=18% Similarity=0.208 Sum_probs=57.7
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCc-------cCCchhchhhhh----hc-C--
Q 012398 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRK-------ESLQHFKKPWAH----EH-A-- 396 (464)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~-------~~l~~~k~~fa~----~~-~-- 396 (464)
||+++|+|.-|.-+|+.|+.+ |+ ++|.++|.+=+=..+-. +++-..|..-|. .. +
T Consensus 1 kVlIVGaGGlG~EiaKnLal~-----Gv------g~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v 69 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLT-----GF------GEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNV 69 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHh-----cC------CeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCC
Confidence 689999999999999999864 64 68999998633211110 111111111111 10 1
Q ss_pred -------CCCC---HHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcC
Q 012398 397 -------PIKS---LLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALS 444 (464)
Q Consensus 397 -------~~~~---L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaLS 444 (464)
.+.+ ..+-+++ .|++|.+.... =...+|-.++..+..|.|.+-+
T Consensus 70 ~V~~~~~~i~~~~~~~~f~~~--~DvVv~a~Dn~--~ar~~in~~c~~~~ip~I~~gt 123 (312)
T cd01489 70 KIVAYHANIKDPDFNVEFFKQ--FDLVFNALDNL--AARRHVNKMCLAADVPLIESGT 123 (312)
T ss_pred eEEEEeccCCCccchHHHHhc--CCEEEECCCCH--HHHHHHHHHHHHCCCCEEEEec
Confidence 1111 2244444 78887665422 2456677888778888888643
No 306
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=65.40 E-value=19 Score=40.58 Aligned_cols=34 Identities=18% Similarity=0.315 Sum_probs=26.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
.||.|+|+|..|..+|+.+... |. ..+++.+|++
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~-----G~-----~~~V~~~d~~ 37 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRER-----GL-----AREVVAVDRR 37 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc-----CC-----CCEEEEEECC
Confidence 6899999999999999988653 53 2358888874
No 307
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=65.34 E-value=7.4 Score=39.65 Aligned_cols=19 Identities=37% Similarity=0.508 Sum_probs=16.5
Q ss_pred EEEeCcchHHHHHHHHHHH
Q 012398 332 FLFLGAGEAGTGIAELIAL 350 (464)
Q Consensus 332 iv~~GAGsAg~GiA~ll~~ 350 (464)
|+|+|||.||+.+|..+..
T Consensus 2 viIiGaG~AGl~~A~~la~ 20 (388)
T TIGR01790 2 LAVIGGGPAGLAIALELAR 20 (388)
T ss_pred EEEECCCHHHHHHHHHHHh
Confidence 7899999999999977653
No 308
>PRK08507 prephenate dehydrogenase; Validated
Probab=65.31 E-value=37 Score=33.55 Aligned_cols=33 Identities=15% Similarity=0.210 Sum_probs=26.0
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
||.|+|+|..|..+|..+... |. ..+++.+|++
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~-----g~-----~~~v~~~d~~ 34 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEK-----GL-----ISKVYGYDHN 34 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhc-----CC-----CCEEEEEcCC
Confidence 799999999999999988653 53 2368888874
No 309
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=65.20 E-value=16 Score=36.68 Aligned_cols=35 Identities=17% Similarity=0.252 Sum_probs=26.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcc
Q 012398 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDS 372 (464)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~ 372 (464)
.||.|+|+|..|-++|.-|++ .|.. ...+|+++|+
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~-----~g~~---~~~~I~v~~r 37 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMIN-----KNIV---SPDQIICSDL 37 (272)
T ss_pred CeEEEECccHHHHHHHHHHHH-----CCCC---CCceEEEECC
Confidence 379999999999999998865 3531 2346888886
No 310
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=65.10 E-value=9.5 Score=30.36 Aligned_cols=31 Identities=19% Similarity=0.334 Sum_probs=23.8
Q ss_pred EeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcc
Q 012398 334 FLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLI 376 (464)
Q Consensus 334 ~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl 376 (464)
|+|||.+|+..|..|.+. | .+|.+++++--+
T Consensus 1 IiGaG~sGl~aA~~L~~~-----g-------~~v~v~E~~~~~ 31 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA-----G-------YRVTVFEKNDRL 31 (68)
T ss_dssp EES-SHHHHHHHHHHHHT-----T-------SEEEEEESSSSS
T ss_pred CEeeCHHHHHHHHHHHHC-----C-------CcEEEEecCccc
Confidence 689999999999988652 3 479999987543
No 311
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=65.02 E-value=13 Score=40.81 Aligned_cols=36 Identities=14% Similarity=0.192 Sum_probs=28.3
Q ss_pred CCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 326 TLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 326 ~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
.-...+|+|+|||.||+..|..+.. .|. +++++|+.
T Consensus 134 ~~~g~~V~VIGaGpaGL~aA~~l~~-----~G~-------~V~v~e~~ 169 (564)
T PRK12771 134 PDTGKRVAVIGGGPAGLSAAYHLRR-----MGH-------AVTIFEAG 169 (564)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEecC
Confidence 3457899999999999999998754 353 48889864
No 312
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=64.86 E-value=8.7 Score=42.36 Aligned_cols=21 Identities=24% Similarity=0.377 Sum_probs=16.8
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 012398 330 QTFLFLGAGEAGTGIAELIAL 350 (464)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~ 350 (464)
.||+|+|||++|+..|+.|++
T Consensus 2 krVaVIGaG~sGL~a~k~l~e 22 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLE 22 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHH
T ss_pred CEEEEECccHHHHHHHHHHHH
Confidence 589999999999999999876
No 313
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=64.57 E-value=10 Score=37.09 Aligned_cols=95 Identities=18% Similarity=0.292 Sum_probs=56.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhch-hhhh-----hcCCCCCHHH
Q 012398 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKK-PWAH-----EHAPIKSLLD 403 (464)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~-~fa~-----~~~~~~~L~e 403 (464)
.+|+|+|+|..|..+|+.|.. .| .++.++|.+--. ...+.. .+.- +......|++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~-----~g-------~~Vv~Id~d~~~-------~~~~~~~~~~~~~v~gd~t~~~~L~~ 61 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSE-----EG-------HNVVLIDRDEER-------VEEFLADELDTHVVIGDATDEDVLEE 61 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHh-----CC-------CceEEEEcCHHH-------HHHHhhhhcceEEEEecCCCHHHHHh
Confidence 379999999999999999976 24 468888875221 111000 1111 1122245777
Q ss_pred H-HhcCCCcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEE-cCCCC
Q 012398 404 A-VKAIKPTMLMGTSGVGKTFTKEVVEAMASF-NEKPVIFA-LSNPT 447 (464)
Q Consensus 404 ~-v~~vkptvLIG~S~~~g~ft~evv~~Ma~~-~erPIIFa-LSNPt 447 (464)
| ++. +|++|-+++.. -.--++-.||.. ..-|-|.+ ..||.
T Consensus 62 agi~~--aD~vva~t~~d--~~N~i~~~la~~~~gv~~viar~~~~~ 104 (225)
T COG0569 62 AGIDD--ADAVVAATGND--EVNSVLALLALKEFGVPRVIARARNPE 104 (225)
T ss_pred cCCCc--CCEEEEeeCCC--HHHHHHHHHHHHhcCCCcEEEEecCHH
Confidence 6 655 99999888754 444555556633 33454444 44553
No 314
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=64.32 E-value=9.6 Score=36.79 Aligned_cols=36 Identities=17% Similarity=0.361 Sum_probs=28.8
Q ss_pred CCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 326 TLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 326 ~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
+|++.|+||+|+|..|..-++.|+.+ | .+|.+++.+
T Consensus 6 ~l~gk~vlVvGgG~va~rk~~~Ll~~-----g-------a~VtVvsp~ 41 (205)
T TIGR01470 6 NLEGRAVLVVGGGDVALRKARLLLKA-----G-------AQLRVIAEE 41 (205)
T ss_pred EcCCCeEEEECcCHHHHHHHHHHHHC-----C-------CEEEEEcCC
Confidence 47888999999999999999998864 4 257777653
No 315
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=64.29 E-value=13 Score=37.97 Aligned_cols=41 Identities=24% Similarity=0.342 Sum_probs=34.4
Q ss_pred CCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCccc
Q 012398 326 TLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIV 377 (464)
Q Consensus 326 ~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~ 377 (464)
+|++++|+++|.|-.|.-+++.|.. .|+ .+|.++|-+-+=.
T Consensus 27 kl~~~~V~VvGiGGVGSw~veALaR-----sGi------g~itlID~D~v~v 67 (263)
T COG1179 27 KLKQAHVCVVGIGGVGSWAVEALAR-----SGI------GRITLIDMDDVCV 67 (263)
T ss_pred HHhhCcEEEEecCchhHHHHHHHHH-----cCC------CeEEEEecccccc
Confidence 6889999999999999999988876 364 6899999886643
No 316
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=64.25 E-value=3.5 Score=42.61 Aligned_cols=84 Identities=23% Similarity=0.320 Sum_probs=48.4
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCc----hhchhhhh-hcCCCCCHHHHHh
Q 012398 332 FLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQ----HFKKPWAH-EHAPIKSLLDAVK 406 (464)
Q Consensus 332 iv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~----~~k~~fa~-~~~~~~~L~e~v~ 406 (464)
|+|+|+|..|-.+++.|.+. +- ..++.+.|++ .++.+.+. ..+-.+.+ +..+..+|.+.++
T Consensus 1 IlvlG~G~vG~~~~~~L~~~-----~~-----~~~v~va~r~----~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 66 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARR-----GP-----FEEVTVADRN----PEKAERLAEKLLGDRVEAVQVDVNDPESLAELLR 66 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCT-----TC-----E-EEEEEESS----HHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHT
T ss_pred CEEEcCcHHHHHHHHHHhcC-----CC-----CCcEEEEECC----HHHHHHHHhhccccceeEEEEecCCHHHHHHHHh
Confidence 78999999999999988753 11 1278888874 11101010 01111111 1122235888888
Q ss_pred cCCCcEEEeccCCCCCCCHHHHHHHHc
Q 012398 407 AIKPTMLMGTSGVGKTFTKEVVEAMAS 433 (464)
Q Consensus 407 ~vkptvLIG~S~~~g~ft~evv~~Ma~ 433 (464)
+ .|++|-++++. +...+++.-.+
T Consensus 67 ~--~dvVin~~gp~--~~~~v~~~~i~ 89 (386)
T PF03435_consen 67 G--CDVVINCAGPF--FGEPVARACIE 89 (386)
T ss_dssp T--SSEEEE-SSGG--GHHHHHHHHHH
T ss_pred c--CCEEEECCccc--hhHHHHHHHHH
Confidence 7 79999988754 77778776554
No 317
>PRK07233 hypothetical protein; Provisional
Probab=64.24 E-value=8.5 Score=39.33 Aligned_cols=31 Identities=19% Similarity=0.288 Sum_probs=25.4
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
||+|+|||-||+..|..|.+ .|. ++.+++++
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~-----~G~-------~v~vlE~~ 31 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAK-----RGH-------EVTVFEAD 31 (434)
T ss_pred CEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEEeC
Confidence 68999999999999988865 353 57788776
No 318
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=64.17 E-value=25 Score=36.87 Aligned_cols=85 Identities=12% Similarity=0.273 Sum_probs=48.9
Q ss_pred cceEEEeC-cchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhhh------cCCCCCH
Q 012398 329 DQTFLFLG-AGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE------HAPIKSL 401 (464)
Q Consensus 329 d~riv~~G-AGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~------~~~~~~L 401 (464)
..+|.|+| +|..|-.+|..+..+ |. .++++|++-. +... ..+.. .-+....
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~-----G~-------~V~~~d~~~~------~~~~----~~~~~aDlVilavP~~~~ 155 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLS-----GY-------QVRILEQDDW------DRAE----DILADAGMVIVSVPIHLT 155 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHC-----CC-------eEEEeCCCcc------hhHH----HHHhcCCEEEEeCcHHHH
Confidence 37899999 999999999998763 53 4788887421 1011 11111 0111122
Q ss_pred HHHHhc---CCCcEEEeccCCCCCCCHHHHHHHHcCCCCc
Q 012398 402 LDAVKA---IKPTMLMGTSGVGKTFTKEVVEAMASFNEKP 438 (464)
Q Consensus 402 ~e~v~~---vkptvLIG~S~~~g~ft~evv~~Ma~~~erP 438 (464)
.++++. ++|+.+|-=. |..+..++++|++....+
T Consensus 156 ~~~~~~l~~l~~~~iv~Dv---~SvK~~~~~~~~~~~~~~ 192 (374)
T PRK11199 156 EEVIARLPPLPEDCILVDL---TSVKNAPLQAMLAAHSGP 192 (374)
T ss_pred HHHHHHHhCCCCCcEEEEC---CCccHHHHHHHHHhCCCC
Confidence 333322 5666555322 246678899998765555
No 319
>PLN02268 probable polyamine oxidase
Probab=64.02 E-value=2.6 Score=43.87 Aligned_cols=20 Identities=25% Similarity=0.434 Sum_probs=18.6
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 012398 331 TFLFLGAGEAGTGIAELIAL 350 (464)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~ 350 (464)
+|+|+|||-||+..|..|.+
T Consensus 2 ~VvVIGaGisGL~aA~~L~~ 21 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHD 21 (435)
T ss_pred CEEEECCCHHHHHHHHHHHh
Confidence 78999999999999999976
No 320
>PRK06475 salicylate hydroxylase; Provisional
Probab=63.99 E-value=7.7 Score=40.08 Aligned_cols=21 Identities=38% Similarity=0.355 Sum_probs=18.9
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 012398 330 QTFLFLGAGEAGTGIAELIAL 350 (464)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~ 350 (464)
+||+|+|||.||+..|-.|.+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~ 23 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAA 23 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHh
Confidence 799999999999999988754
No 321
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=63.74 E-value=10 Score=38.56 Aligned_cols=36 Identities=17% Similarity=0.257 Sum_probs=26.0
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 329 DQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 329 d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
..+|+|+|||.||+..|-.|...- +.|+ ++.++|++
T Consensus 3 ~~dv~IvGaG~aGl~~A~~L~~~~--~~G~-------~v~v~E~~ 38 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSRLS--HGGL-------PVALIEAF 38 (395)
T ss_pred cCCEEEECcCHHHHHHHHHhhhcc--cCCC-------EEEEEeCC
Confidence 457999999999999999886520 0154 57777763
No 322
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=63.71 E-value=8.7 Score=41.18 Aligned_cols=36 Identities=17% Similarity=0.375 Sum_probs=28.0
Q ss_pred CcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccC
Q 012398 328 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKG 374 (464)
Q Consensus 328 ~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~G 374 (464)
+.-+++|+|||.+|+++|.-|.++ |.+ ++.++|+..
T Consensus 7 ~~~~v~IIGaG~sGlaaa~~L~~~-----g~~------~~~i~Ek~~ 42 (443)
T COG2072 7 THTDVAIIGAGQSGLAAAYALKQA-----GVP------DFVIFEKRD 42 (443)
T ss_pred CcccEEEECCCHHHHHHHHHHHHc-----CCC------cEEEEEccC
Confidence 346899999999999999998764 653 266777663
No 323
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=63.59 E-value=11 Score=36.13 Aligned_cols=32 Identities=28% Similarity=0.438 Sum_probs=23.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccC
Q 012398 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKG 374 (464)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~G 374 (464)
.|+|+|||.||+..|-.|.+ .|+ ++.++|+..
T Consensus 2 dv~IiGaG~aGl~~A~~l~~-----~g~-------~v~vie~~~ 33 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLAD-----KGL-------RVLLLEKKS 33 (295)
T ss_pred CEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEeccC
Confidence 47999999999999987754 354 466677653
No 324
>PRK09126 hypothetical protein; Provisional
Probab=63.58 E-value=8.7 Score=39.11 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=19.3
Q ss_pred cceEEEeCcchHHHHHHHHHHH
Q 012398 329 DQTFLFLGAGEAGTGIAELIAL 350 (464)
Q Consensus 329 d~riv~~GAGsAg~GiA~ll~~ 350 (464)
+..|+|+|||.||+..|-.|.+
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~ 24 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAG 24 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHh
Confidence 4579999999999999998865
No 325
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=63.50 E-value=9.2 Score=42.79 Aligned_cols=35 Identities=26% Similarity=0.423 Sum_probs=28.3
Q ss_pred CCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 327 LADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 327 l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
-...+|+|+|||.||+..|..|.. .|. ++.++|+.
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~-----~G~-------~V~V~E~~ 359 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLAR-----NGV-------AVTVYDRH 359 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEecC
Confidence 357899999999999999998875 353 47888875
No 326
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=63.23 E-value=41 Score=41.13 Aligned_cols=119 Identities=18% Similarity=0.242 Sum_probs=69.0
Q ss_pred HHHHHHHHhcCCCeeeeeecCCCc-------cHHHHHHHHcCCCceeecCccchhHHHHHHHHHHHHHhCCCCCcceEEE
Q 012398 262 EFMTAVKQNYGEKVLIQFEDFANH-------NAFELLSKYSSSHLVFNDDIQGTASVVLAGILSALKLVGGTLADQTFLF 334 (464)
Q Consensus 262 efv~av~~~fGp~~lIq~EDf~~~-------~af~iL~ryr~~~~~FnDDiQGTaaV~LAgll~Alk~~g~~l~d~riv~ 334 (464)
+.+++.-+.+.+..+|| |++.. +-+++..+|.-.+++.|=|-+|.+.- .
T Consensus 442 ~ViEaaLk~~~G~~IIN--SIs~~~~~~~~~~~~~l~~kyga~vV~m~~de~G~~~t----------------~------ 497 (1229)
T PRK09490 442 EVIEAGLKCIQGKGIVN--SISLKEGEEKFIEHARLVRRYGAAVVVMAFDEQGQADT----------------R------ 497 (1229)
T ss_pred HHHHHHHhhcCCCCEEE--eCCCCCCCccHHHHHHHHHHhCCCEEEEecCCCCCCCC----------------H------
Confidence 44555555666677776 44432 36677888888888888777776533 1
Q ss_pred eCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhhhcCCCCCHHHHHhcC-----C
Q 012398 335 LGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAI-----K 409 (464)
Q Consensus 335 ~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~v-----k 409 (464)
.-=+.||+.+.+.+.++.|++. ++|+ +|..=+ +-+ .... +...++.. ..|+|+.+ .
T Consensus 498 ----e~r~~ia~r~~~~~~~~~Gi~~----~dIi-~Dplv~-~v~--t~~e-e~~~~~~~------~leair~ik~~~P~ 558 (1229)
T PRK09490 498 ----ERKIEICKRAYDILTEEVGFPP----EDII-FDPNIF-AVA--TGIE-EHNNYAVD------FIEATRWIKQNLPH 558 (1229)
T ss_pred ----HHHHHHHHHHHHHHHHHcCCCH----HHEE-EcCCcc-eee--cChH-HHHHHHHH------HHHHHHHHHHHCCC
Confidence 1224688888887765579974 4454 777322 211 1122 22334432 44555532 3
Q ss_pred CcEEEeccCCCCCC
Q 012398 410 PTMLMGTSGVGKTF 423 (464)
Q Consensus 410 ptvLIG~S~~~g~f 423 (464)
..+..|+|...=-|
T Consensus 559 ~~~~~GlSNiSFgl 572 (1229)
T PRK09490 559 AKISGGVSNVSFSF 572 (1229)
T ss_pred CcEEEeeccccccC
Confidence 56899999876334
No 327
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=62.97 E-value=32 Score=33.25 Aligned_cols=104 Identities=17% Similarity=0.228 Sum_probs=56.0
Q ss_pred CCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChh-hhcCeEEEEcccCcccCCCccCCchhchhhhhhcCCCCCHHHHH
Q 012398 327 LADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIE-EARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAV 405 (464)
Q Consensus 327 l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~-eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~L~e~v 405 (464)
..++||.|+|.|..+. +|.-+...|.. ++..+ -+..-+.+.|..-+++.-- +-..+-.-|++. |.-..
T Consensus 39 ~~~~rI~~~G~GgSa~-~A~~~a~~l~~--~~~~~r~gl~a~~l~~d~~~~ta~a--nd~~~~~~f~~q------l~~~~ 107 (196)
T PRK10886 39 LNGNKILCCGNGTSAA-NAQHFAASMIN--RFETERPSLPAIALNTDNVVLTAIA--NDRLHDEVYAKQ------VRALG 107 (196)
T ss_pred HcCCEEEEEECcHHHH-HHHHHHHHHhc--cccccCCCcceEEecCcHHHHHHHh--ccccHHHHHHHH------HHHcC
Confidence 4668999999998766 66666655432 11100 0111222333322332211 112334455553 33222
Q ss_pred hcCCCcEEEeccCCCCCCCHHHHHHH--HcCCCCcEEEEcCCC
Q 012398 406 KAIKPTMLMGTSGVGKTFTKEVVEAM--ASFNEKPVIFALSNP 446 (464)
Q Consensus 406 ~~vkptvLIG~S~~~g~ft~evv~~M--a~~~erPIIFaLSNP 446 (464)
+ +-|++|++|..|. |+++++.+ |+...-|+|- ++++
T Consensus 108 ~--~gDvli~iS~SG~--s~~v~~a~~~Ak~~G~~vI~-IT~~ 145 (196)
T PRK10886 108 H--AGDVLLAISTRGN--SRDIVKAVEAAVTRDMTIVA-LTGY 145 (196)
T ss_pred C--CCCEEEEEeCCCC--CHHHHHHHHHHHHCCCEEEE-EeCC
Confidence 2 4799999999774 77887755 4556667665 5543
No 328
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=62.78 E-value=3.2 Score=48.19 Aligned_cols=92 Identities=25% Similarity=0.352 Sum_probs=58.4
Q ss_pred HHHcCCCceeecCccchhHHHHHHHHHHHHHhCCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEc
Q 012398 292 SKYSSSHLVFNDDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVD 371 (464)
Q Consensus 292 ~ryr~~~~~FnDDiQGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD 371 (464)
.||-.+|.||.++-| ++|.++++.++|||+.|+-.-+-+... |+.-.+. ..|.+.|
T Consensus 411 sRYD~qiavfG~~fq------------------eKL~~~~~FlVGaGAIGCE~LKN~am~-----Gvg~g~~-g~ItVTD 466 (1013)
T KOG2012|consen 411 SRYDGQIAVFGAKFQ------------------EKLADQKVFLVGAGAIGCELLKNFALM-----GVGCGNS-GKITVTD 466 (1013)
T ss_pred CccccchhhhchHHH------------------HHHhhCcEEEEccchhhHHHHHhhhhe-----eeccCCC-CceEEec
Confidence 467777888877655 789999999999999999887776543 5532221 2466666
Q ss_pred ccCcccCCCccCCchhchhhh-hhc--CCC--CCHHHHHhcCCCcEEE
Q 012398 372 SKGLIVSSRKESLQHFKKPWA-HEH--API--KSLLDAVKAIKPTMLM 414 (464)
Q Consensus 372 ~~GLl~~~r~~~l~~~k~~fa-~~~--~~~--~~L~e~v~~vkptvLI 414 (464)
-+ .|.++ +|+.. |- |+. ... ..-.+|+....|++-|
T Consensus 467 mD-~IEkS---NLnRQ---FLFR~~dVgk~KSe~AA~A~~~mNp~l~I 507 (1013)
T KOG2012|consen 467 MD-HIEKS---NLNRQ---FLFRPWDVGKPKSEVAAAAARGMNPDLNI 507 (1013)
T ss_pred cc-hhhhc---cccce---eeccccccCchHHHHHHHHHHhcCCCcee
Confidence 54 22222 34422 22 221 111 2467888999999887
No 329
>PRK06753 hypothetical protein; Provisional
Probab=62.35 E-value=9.4 Score=38.59 Aligned_cols=20 Identities=30% Similarity=0.446 Sum_probs=18.1
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 012398 331 TFLFLGAGEAGTGIAELIAL 350 (464)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~ 350 (464)
+|+|+|||.||+..|..|.+
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~ 21 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQE 21 (373)
T ss_pred EEEEECCCHHHHHHHHHHHh
Confidence 79999999999999998865
No 330
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=62.35 E-value=33 Score=34.11 Aligned_cols=86 Identities=13% Similarity=0.264 Sum_probs=51.3
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhhhcCCCCCHHHHHhcCC
Q 012398 331 TFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIK 409 (464)
Q Consensus 331 riv~~GA-GsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vk 409 (464)
||+|.|| |-.|..+++.|++ .| +++.+|+..-. +.-+-.+...+.++++..+
T Consensus 2 ~iLVtG~~GfiGs~l~~~L~~-----~g--------~V~~~~~~~~~--------------~~~Dl~d~~~~~~~~~~~~ 54 (299)
T PRK09987 2 NILLFGKTGQVGWELQRALAP-----LG--------NLIALDVHSTD--------------YCGDFSNPEGVAETVRKIR 54 (299)
T ss_pred eEEEECCCCHHHHHHHHHhhc-----cC--------CEEEecccccc--------------ccCCCCCHHHHHHHHHhcC
Confidence 7999997 9999998887753 13 35666653110 0001111234777888888
Q ss_pred CcEEEeccCCCCC----------------CCHHHHHHHHcCCCCcEEEEcC
Q 012398 410 PTMLMGTSGVGKT----------------FTKEVVEAMASFNEKPVIFALS 444 (464)
Q Consensus 410 ptvLIG~S~~~g~----------------ft~evv~~Ma~~~erPIIFaLS 444 (464)
||++|=+.+.... -|..+++.+.++. .++||.=|
T Consensus 55 ~D~Vih~Aa~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g-~~~v~~Ss 104 (299)
T PRK09987 55 PDVIVNAAAHTAVDKAESEPEFAQLLNATSVEAIAKAANEVG-AWVVHYST 104 (299)
T ss_pred CCEEEECCccCCcchhhcCHHHHHHHHHHHHHHHHHHHHHcC-CeEEEEcc
Confidence 9999966654321 1334555555544 56887544
No 331
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=62.31 E-value=12 Score=40.01 Aligned_cols=97 Identities=13% Similarity=0.090 Sum_probs=55.6
Q ss_pred HHHHHHhCCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhhhcC
Q 012398 317 LSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHA 396 (464)
Q Consensus 317 l~Alk~~g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~~~ 396 (464)
+.++.-....|...||+|+|-+.-..++++.+.+ .|+.. ..+..-+..... ..+... .-+. .
T Consensus 299 ~~~l~~~~~~l~Gkrvai~~~~~~~~~l~~~l~e-----lGm~v----~~~~~~~~~~~~-----~~~~~~-~~~~---~ 360 (432)
T TIGR01285 299 QDAMLDTHFFLGGKKVAIAAEPDLLAAWATFFTS-----MGAQI----VAAVTTTGSPLL-----QKLPVE-TVVI---G 360 (432)
T ss_pred HHHHHHHHHhhCCCEEEEEcCHHHHHHHHHHHHH-----CCCEE----EEEEeCCCCHHH-----HhCCcC-cEEe---C
Confidence 3444444456778999999988889999999754 47742 122211111100 011111 0111 1
Q ss_pred CCCCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEE
Q 012398 397 PIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVI 440 (464)
Q Consensus 397 ~~~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPII 440 (464)
+...+++.++..+||++||-|- .+.+-+.+ .-|.|
T Consensus 361 D~~~l~~~i~~~~~dliig~s~-----~k~~A~~l----~ip~i 395 (432)
T TIGR01285 361 DLEDLEDLACAAGADLLITNSH-----GRALAQRL----ALPLV 395 (432)
T ss_pred CHHHHHHHHhhcCCCEEEECcc-----hHHHHHHc----CCCEE
Confidence 2246788898889999998664 23444444 67876
No 332
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=62.29 E-value=11 Score=40.46 Aligned_cols=34 Identities=21% Similarity=0.357 Sum_probs=27.7
Q ss_pred CcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 328 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 328 ~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
...+|+|+|||.||+..|..+.. .|. ++.++|+.
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~-----~G~-------~V~vie~~ 175 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLAR-----AGH-------KVTVFERA 175 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHh-----CCC-------cEEEEecC
Confidence 46799999999999999998864 353 58888875
No 333
>PRK07045 putative monooxygenase; Reviewed
Probab=62.26 E-value=9.7 Score=38.93 Aligned_cols=21 Identities=33% Similarity=0.531 Sum_probs=18.7
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 012398 330 QTFLFLGAGEAGTGIAELIAL 350 (464)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~ 350 (464)
-+|+|+|||.||+..|-.|.+
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~ 26 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGA 26 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHh
Confidence 479999999999999988865
No 334
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=62.24 E-value=32 Score=34.21 Aligned_cols=31 Identities=16% Similarity=0.225 Sum_probs=24.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
||.|+|+|..|.++|..+... |. +++++|++
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~-----G~-------~V~~~dr~ 31 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKA-----GY-------QLHVTTIG 31 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHC-----CC-------eEEEEcCC
Confidence 588999999999999998752 53 57777764
No 335
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=62.14 E-value=8.3 Score=40.55 Aligned_cols=37 Identities=19% Similarity=0.316 Sum_probs=26.8
Q ss_pred CCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccC
Q 012398 326 TLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKG 374 (464)
Q Consensus 326 ~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~G 374 (464)
..+..||||+|+|.||+..|+.|.. . .-+|.++|.+-
T Consensus 7 ~~~~~~vVIvGgG~aGl~~a~~L~~-----~-------~~~ItlI~~~~ 43 (424)
T PTZ00318 7 RLKKPNVVVLGTGWAGAYFVRNLDP-----K-------KYNITVISPRN 43 (424)
T ss_pred CCCCCeEEEECCCHHHHHHHHHhCc-----C-------CCeEEEEcCCC
Confidence 3456799999999999998876621 1 13588888653
No 336
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=61.78 E-value=30 Score=36.86 Aligned_cols=96 Identities=19% Similarity=0.416 Sum_probs=63.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCC------chhchhhhhh--cCC----
Q 012398 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESL------QHFKKPWAHE--HAP---- 397 (464)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l------~~~k~~fa~~--~~~---- 397 (464)
.||.++|+|.=|..||+++-.-.. +.+.-+..=++|.++.. ..++..+| +++..+|... .++
T Consensus 22 ~kV~ivGsGnWGsaiaki~~~n~~---~~~~f~~~Vrmwv~ee~---i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvA 95 (372)
T KOG2711|consen 22 LKVCIVGSGNWGSAIAKIVGENVK---EFPIFDPQVRMWVFEEE---INGEAEKLTEIINSRHENVKYLPGIKLPENVVA 95 (372)
T ss_pred eEEEEEccChHHHHHHHHHhhhhh---hccccCceeeEEEeccc---cCChhHHHHHHhccccccccccCCccCCCCeEe
Confidence 799999999999999999976432 33344556689998864 22211112 1122344321 122
Q ss_pred CCCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCC
Q 012398 398 IKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFN 435 (464)
Q Consensus 398 ~~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~ 435 (464)
..+|.||++. +|+||= ..|--|+..+++.+..+-
T Consensus 96 v~dl~ea~~d--ADilvf--~vPhQf~~~ic~~l~g~v 129 (372)
T KOG2711|consen 96 VPDLVEAAKD--ADILVF--VVPHQFIPRICEQLKGYV 129 (372)
T ss_pred cchHHHHhcc--CCEEEE--eCChhhHHHHHHHHhccc
Confidence 3689999998 999983 334579999999998654
No 337
>PRK12828 short chain dehydrogenase; Provisional
Probab=61.76 E-value=16 Score=33.63 Aligned_cols=36 Identities=22% Similarity=0.357 Sum_probs=25.6
Q ss_pred CCCcceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 326 TLADQTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 326 ~l~d~riv~~GA-GsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
++++.+++|.|| |..|..+++.+++ .|. +++++|++
T Consensus 4 ~~~~k~vlItGatg~iG~~la~~l~~-----~G~-------~v~~~~r~ 40 (239)
T PRK12828 4 SLQGKVVAITGGFGGLGRATAAWLAA-----RGA-------RVALIGRG 40 (239)
T ss_pred CCCCCEEEEECCCCcHhHHHHHHHHH-----CCC-------eEEEEeCC
Confidence 467789999997 6667777776654 353 58888874
No 338
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=61.58 E-value=13 Score=31.37 Aligned_cols=91 Identities=11% Similarity=0.125 Sum_probs=52.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhhhcCCCCCHHHHHhcCC
Q 012398 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLDAVKAIK 409 (464)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vk 409 (464)
.||.|+|+|..|.....-+.... .+ .+=..++|++ . +......+.|-- +...++.|.++.-+
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~---~~------~~v~~v~d~~------~-~~~~~~~~~~~~--~~~~~~~~ll~~~~ 62 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSS---PD------FEVVAVCDPD------P-ERAEAFAEKYGI--PVYTDLEELLADED 62 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTT---TT------EEEEEEECSS------H-HHHHHHHHHTTS--EEESSHHHHHHHTT
T ss_pred CEEEEECCcHHHHHHHHHHHhcC---CC------cEEEEEEeCC------H-HHHHHHHHHhcc--cchhHHHHHHHhhc
Confidence 38999999999777655554320 11 1223456653 1 111212222211 23478999999878
Q ss_pred CcEEEeccCCCCCCCHHHHHHHHcCCCCcEEE
Q 012398 410 PTMLMGTSGVGKTFTKEVVEAMASFNEKPVIF 441 (464)
Q Consensus 410 ptvLIG~S~~~g~ft~evv~~Ma~~~erPIIF 441 (464)
+|+++ +++++ ....++++...+... +|+.
T Consensus 63 ~D~V~-I~tp~-~~h~~~~~~~l~~g~-~v~~ 91 (120)
T PF01408_consen 63 VDAVI-IATPP-SSHAEIAKKALEAGK-HVLV 91 (120)
T ss_dssp ESEEE-EESSG-GGHHHHHHHHHHTTS-EEEE
T ss_pred CCEEE-EecCC-cchHHHHHHHHHcCC-EEEE
Confidence 99988 55544 466677766665443 5543
No 339
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=61.46 E-value=9.5 Score=40.96 Aligned_cols=26 Identities=31% Similarity=0.411 Sum_probs=20.6
Q ss_pred CCCCc--ceEEEeCcchHHHHHHHHHHH
Q 012398 325 GTLAD--QTFLFLGAGEAGTGIAELIAL 350 (464)
Q Consensus 325 ~~l~d--~riv~~GAGsAg~GiA~ll~~ 350 (464)
+++++ -.|+|+|||.||...|..+..
T Consensus 33 ~~~~~~~~DViIVGaGPAG~~aA~~LA~ 60 (450)
T PLN00093 33 KKLSGRKLRVAVIGGGPAGACAAETLAK 60 (450)
T ss_pred CCcCCCCCeEEEECCCHHHHHHHHHHHh
Confidence 33444 479999999999999988765
No 340
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=61.30 E-value=9.5 Score=38.68 Aligned_cols=32 Identities=19% Similarity=0.362 Sum_probs=24.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
-.|+|+|||.||+..|-.|.+ .|+ ++.++|+.
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~-----~G~-------~v~v~E~~ 37 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQ-----SGL-------RVALLAPR 37 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHh-----CCC-------eEEEEecC
Confidence 469999999999999987764 354 46677755
No 341
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=61.14 E-value=12 Score=39.96 Aligned_cols=36 Identities=19% Similarity=0.275 Sum_probs=28.8
Q ss_pred CCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 326 TLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 326 ~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
+-+..+|+|+|+|.||+..|..+.. .|. ++.++|+.
T Consensus 130 ~~~~~~V~IIG~G~aGl~aA~~l~~-----~G~-------~V~vie~~ 165 (449)
T TIGR01316 130 PSTHKKVAVIGAGPAGLACASELAK-----AGH-------SVTVFEAL 165 (449)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHH-----CCC-------cEEEEecC
Confidence 4457899999999999999998865 353 58888874
No 342
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=60.74 E-value=20 Score=35.62 Aligned_cols=93 Identities=17% Similarity=0.335 Sum_probs=60.0
Q ss_pred CCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhhhcCCCCCHHH
Q 012398 324 GGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLD 403 (464)
Q Consensus 324 g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~L~e 403 (464)
-...+-.+++|+|+=--|..+|++|..+ .+++++|-+-.. ..-|++. ..|-. +.-
T Consensus 40 ~~~~E~~~vli~G~YltG~~~a~~Ls~~-------------~~vtv~Di~p~~----r~~lp~~-v~Fr~-------~~~ 94 (254)
T COG4017 40 LEGEEFKEVLIFGVYLTGNYTAQMLSKA-------------DKVTVVDIHPFM----RGFLPNN-VKFRN-------LLK 94 (254)
T ss_pred hcccCcceEEEEEeeehhHHHHHHhccc-------------ceEEEecCCHHH----HhcCCCC-ccHhh-------hcC
Confidence 3445668999999998999999888542 478888874211 1111111 22211 111
Q ss_pred HHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCC
Q 012398 404 AVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTS 448 (464)
Q Consensus 404 ~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaLSNPt~ 448 (464)
-+.+ .-|++|-+.+.|| .++|.++.. .|=+|-.-||++
T Consensus 95 ~~~G-~~DlivDlTGlGG-~~Pe~L~~f-----np~vfiVEdP~g 132 (254)
T COG4017 95 FIRG-EVDLIVDLTGLGG-IEPEFLAKF-----NPKVFIVEDPKG 132 (254)
T ss_pred CCCC-ceeEEEeccccCC-CCHHHHhcc-----CCceEEEECCCC
Confidence 1111 3488999999886 899998876 567888889984
No 343
>PRK05866 short chain dehydrogenase; Provisional
Probab=60.69 E-value=22 Score=35.27 Aligned_cols=38 Identities=26% Similarity=0.287 Sum_probs=25.6
Q ss_pred CCCCCcceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 324 GGTLADQTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 324 g~~l~d~riv~~GA-GsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
+..+++.+++|.|| |-.|..+|+.+.+ .|. ++++++++
T Consensus 35 ~~~~~~k~vlItGasggIG~~la~~La~-----~G~-------~Vi~~~R~ 73 (293)
T PRK05866 35 PVDLTGKRILLTGASSGIGEAAAEQFAR-----RGA-------TVVAVARR 73 (293)
T ss_pred CcCCCCCEEEEeCCCcHHHHHHHHHHHH-----CCC-------EEEEEECC
Confidence 45577789999998 4555556665543 353 68888875
No 344
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=60.45 E-value=13 Score=37.32 Aligned_cols=35 Identities=26% Similarity=0.304 Sum_probs=25.2
Q ss_pred CcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccC
Q 012398 328 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKG 374 (464)
Q Consensus 328 ~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~G 374 (464)
.+--++|+|||+||+..|..|.+. |+ ++.+++++=
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~-----g~-------kV~v~E~~~ 50 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKA-----GL-------KVAVIERKL 50 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHH-----TS--------EEEEESSS
T ss_pred ccCCEEEECCChhHHHHHHHHHHC-----CC-------eEEEEecCC
Confidence 345789999999999999988764 54 578888763
No 345
>PRK06199 ornithine cyclodeaminase; Validated
Probab=60.03 E-value=41 Score=35.64 Aligned_cols=84 Identities=15% Similarity=0.146 Sum_probs=53.5
Q ss_pred CcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhhh------cCCCCCH
Q 012398 328 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE------HAPIKSL 401 (464)
Q Consensus 328 ~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~------~~~~~~L 401 (464)
.-.++.|+|+|.-+...++.++... .. .++|++.|+. .++ ...+.+.+.+. -....+.
T Consensus 154 da~~l~iiG~G~QA~~~l~a~~~v~---~~------i~~V~v~~r~----~~~---a~~f~~~~~~~~~~~~~v~~~~s~ 217 (379)
T PRK06199 154 DSKVVGLLGPGVMGKTILAAFMAVC---PG------IDTIKIKGRG----QKS---LDSFATWVAETYPQITNVEVVDSI 217 (379)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhc---CC------ccEEEEECCC----HHH---HHHHHHHHHHhcCCCceEEEeCCH
Confidence 3578999999998888777665531 01 3678887773 221 22233333221 1123789
Q ss_pred HHHHhcCCCcEEEeccC--C-----CCCCCHHHHH
Q 012398 402 LDAVKAIKPTMLMGTSG--V-----GKTFTKEVVE 429 (464)
Q Consensus 402 ~e~v~~vkptvLIG~S~--~-----~g~ft~evv~ 429 (464)
+|++++ +||++-+.+ . ..+|..++++
T Consensus 218 ~eav~~--ADIVvtaT~s~~~~~s~~Pv~~~~~lk 250 (379)
T PRK06199 218 EEVVRG--SDIVTYCNSGETGDPSTYPYVKREWVK 250 (379)
T ss_pred HHHHcC--CCEEEEccCCCCCCCCcCcEecHHHcC
Confidence 999987 999997542 1 1488899886
No 346
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=60.02 E-value=15 Score=38.62 Aligned_cols=26 Identities=27% Similarity=0.484 Sum_probs=22.6
Q ss_pred CCCcceEEEeCcchHHHHHHHHHHHH
Q 012398 326 TLADQTFLFLGAGEAGTGIAELIALE 351 (464)
Q Consensus 326 ~l~d~riv~~GAGsAg~GiA~ll~~a 351 (464)
.+++.+++|+|+|.+|.++|+.|...
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l~~~ 27 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFLKKL 27 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHC
Confidence 46788999999999999999998753
No 347
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=59.77 E-value=34 Score=32.43 Aligned_cols=36 Identities=25% Similarity=0.292 Sum_probs=26.2
Q ss_pred CCCcceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 326 TLADQTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 326 ~l~d~riv~~GA-GsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
++++.+++|.|| |..|..+|+.+++ .|. ++.++|++
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~-----~G~-------~V~~~~r~ 43 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQ-----AGA-------EVILNGRD 43 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHH-----cCC-------EEEEEeCC
Confidence 578899999997 6677777777754 353 57777764
No 348
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=59.48 E-value=23 Score=37.32 Aligned_cols=64 Identities=19% Similarity=0.238 Sum_probs=42.9
Q ss_pred CCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhhh-cCCCCCHHH
Q 012398 325 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE-HAPIKSLLD 403 (464)
Q Consensus 325 ~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~-~~~~~~L~e 403 (464)
..|++.+|.|+|-|+-|.++|+.+.+. |+ +++..|+.+ +. .. .+.. .-...++.|
T Consensus 12 ~~LkgKtVGIIG~GsIG~amA~nL~d~-----G~-------~ViV~~r~~---~s----~~-----~A~~~G~~v~sl~E 67 (335)
T PRK13403 12 ELLQGKTVAVIGYGSQGHAQAQNLRDS-----GV-------EVVVGVRPG---KS----FE-----VAKADGFEVMSVSE 67 (335)
T ss_pred hhhCcCEEEEEeEcHHHHHHHHHHHHC-----cC-------EEEEEECcc---hh----hH-----HHHHcCCEECCHHH
Confidence 357899999999999999999998763 65 466665431 11 11 1111 111247999
Q ss_pred HHhcCCCcEEE
Q 012398 404 AVKAIKPTMLM 414 (464)
Q Consensus 404 ~v~~vkptvLI 414 (464)
+++. +|+++
T Consensus 68 aak~--ADVV~ 76 (335)
T PRK13403 68 AVRT--AQVVQ 76 (335)
T ss_pred HHhc--CCEEE
Confidence 9987 88877
No 349
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=59.33 E-value=16 Score=38.91 Aligned_cols=28 Identities=14% Similarity=0.152 Sum_probs=23.7
Q ss_pred hCCCCCcceEEEeCcchHHHHHHHHHHH
Q 012398 323 VGGTLADQTFLFLGAGEAGTGIAELIAL 350 (464)
Q Consensus 323 ~g~~l~d~riv~~GAGsAg~GiA~ll~~ 350 (464)
.+..++.++|+|+|+|.+|+.+|+.|.+
T Consensus 10 ~~~~~~~~~v~viG~G~~G~~~A~~L~~ 37 (480)
T PRK01438 10 WHSDWQGLRVVVAGLGVSGFAAADALLE 37 (480)
T ss_pred cccCcCCCEEEEECCCHHHHHHHHHHHH
Confidence 3456778899999999999999988864
No 350
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=59.29 E-value=49 Score=34.67 Aligned_cols=107 Identities=14% Similarity=0.189 Sum_probs=68.4
Q ss_pred CCCceeec-CccchhHHHHHHHHHHHHHhC-CCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 296 SSHLVFND-DIQGTASVVLAGILSALKLVG-GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 296 ~~~~~FnD-DiQGTaaV~LAgll~Alk~~g-~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
..+||+|= |-..=-+=+||=++.-.+..| +++++.+|.++|-+.- ++++-++.++.+ .|+ ++.++-.+
T Consensus 121 ~~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~~~l~g~~ia~vGD~~~--~v~~Sl~~~~~~-~g~-------~v~~~~P~ 190 (336)
T PRK03515 121 AGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLAYAGDARN--NMGNSLLEAAAL-TGL-------DLRLVAPK 190 (336)
T ss_pred CCCCEEECCCCCCChHHHHHHHHHHHHHhCCCCcCCCEEEEeCCCcC--cHHHHHHHHHHH-cCC-------EEEEECCc
Confidence 47999993 222233456777777767666 4799999999998632 467777666654 464 68888877
Q ss_pred CcccCCCccCCchhchhhhhhcC-C---CCCHHHHHhcCCCcEEEecc
Q 012398 374 GLIVSSRKESLQHFKKPWAHEHA-P---IKSLLDAVKAIKPTMLMGTS 417 (464)
Q Consensus 374 GLl~~~r~~~l~~~k~~fa~~~~-~---~~~L~e~v~~vkptvLIG~S 417 (464)
|+.-.+ + +-+.-+.+++... . ..++.|++++ +||+.-.+
T Consensus 191 ~~~~~~--~-~~~~~~~~~~~~g~~i~~~~d~~ea~~~--aDvvytd~ 233 (336)
T PRK03515 191 ACWPEA--A-LVTECRALAQKNGGNITLTEDIAEGVKG--ADFIYTDV 233 (336)
T ss_pred hhcCcH--H-HHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCEEEecC
Confidence 774321 1 2111223443211 1 2689999998 99999764
No 351
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=59.18 E-value=39 Score=32.62 Aligned_cols=78 Identities=13% Similarity=0.207 Sum_probs=44.2
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchh----chhhhh-hcCCCCCHHHH
Q 012398 331 TFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHF----KKPWAH-EHAPIKSLLDA 404 (464)
Q Consensus 331 riv~~GA-GsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~----k~~fa~-~~~~~~~L~e~ 404 (464)
+|+|.|| |..|..+++.|+.. |- ..+++.+|+...- .+.+.+... ...+.. +.....++.++
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~-----~~-----~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 68 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNE-----HP-----DAEVIVLDKLTYA--GNLENLADLEDNPRYRFVKGDIGDRELVSRL 68 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHh-----CC-----CCEEEEecCCCcc--hhhhhhhhhccCCCcEEEEcCCcCHHHHHHH
Confidence 5888897 88898898887653 31 1367777752110 011111111 011111 21222467888
Q ss_pred HhcCCCcEEEeccCCC
Q 012398 405 VKAIKPTMLMGTSGVG 420 (464)
Q Consensus 405 v~~vkptvLIG~S~~~ 420 (464)
++..+||++|=+++..
T Consensus 69 ~~~~~~d~vi~~a~~~ 84 (317)
T TIGR01181 69 FTEHQPDAVVHFAAES 84 (317)
T ss_pred HhhcCCCEEEEccccc
Confidence 8888899999888753
No 352
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=59.07 E-value=11 Score=39.85 Aligned_cols=32 Identities=25% Similarity=0.373 Sum_probs=24.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
-.|+|+|||.||...|-.+.+ .|+ ++.++|+.
T Consensus 6 ~DViIVGaGpAG~~aA~~La~-----~G~-------~V~llEr~ 37 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAR-----EGA-------QVLVIERG 37 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHh-----CCC-------eEEEEEcC
Confidence 479999999999999988764 365 46666654
No 353
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=58.85 E-value=12 Score=38.46 Aligned_cols=33 Identities=21% Similarity=0.332 Sum_probs=25.5
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 329 DQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 329 d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
...|+|+|||.||+..|-.|.+ .|+ ++.++|+.
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~-----~G~-------~v~liE~~ 38 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALAD-----AGL-------SVALVEGR 38 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhc-----CCC-------EEEEEeCC
Confidence 3479999999999999987754 364 47777765
No 354
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=58.82 E-value=10 Score=38.42 Aligned_cols=20 Identities=20% Similarity=0.376 Sum_probs=18.0
Q ss_pred EEEeCcchHHHHHHHHHHHH
Q 012398 332 FLFLGAGEAGTGIAELIALE 351 (464)
Q Consensus 332 iv~~GAGsAg~GiA~ll~~a 351 (464)
|+|+|||.||+..|..|.+.
T Consensus 2 v~IvGaG~aGl~~A~~L~~~ 21 (382)
T TIGR01984 2 VIIVGGGLVGLSLALALSRL 21 (382)
T ss_pred EEEECccHHHHHHHHHHhcC
Confidence 79999999999999998763
No 355
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=58.67 E-value=12 Score=41.00 Aligned_cols=31 Identities=35% Similarity=0.560 Sum_probs=25.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcc
Q 012398 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDS 372 (464)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~ 372 (464)
+||.|+|+|..|.|||..++.+ |. .++++|.
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~a-----G~-------~V~l~D~ 38 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQA-----GH-------TVLLYDA 38 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-----CC-------eEEEEeC
Confidence 5799999999999999998763 54 4777775
No 356
>PRK05993 short chain dehydrogenase; Provisional
Probab=58.66 E-value=26 Score=34.10 Aligned_cols=99 Identities=15% Similarity=0.173 Sum_probs=51.8
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhh-hcCCCCCHHHHHhc
Q 012398 330 QTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAH-EHAPIKSLLDAVKA 407 (464)
Q Consensus 330 ~riv~~GA-GsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~-~~~~~~~L~e~v~~ 407 (464)
.+++|.|| |..|..+|+.+.+ .|. ++++++++- +..+.+......+.. +..+..++.++++.
T Consensus 5 k~vlItGasggiG~~la~~l~~-----~G~-------~Vi~~~r~~----~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~ 68 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQS-----DGW-------RVFATCRKE----EDVAALEAEGLEAFQLDYAEPESIAALVAQ 68 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHH-----CCC-------EEEEEECCH----HHHHHHHHCCceEEEccCCCHHHHHHHHHH
Confidence 57899998 6666667776643 353 688887641 100011111111111 11111234444443
Q ss_pred C------CCcEEEeccCCC--CCC----------------------CHHHHHHHHcCCCCcEEEEcC
Q 012398 408 I------KPTMLMGTSGVG--KTF----------------------TKEVVEAMASFNEKPVIFALS 444 (464)
Q Consensus 408 v------kptvLIG~S~~~--g~f----------------------t~evv~~Ma~~~erPIIFaLS 444 (464)
+ +.|++|-..+.+ +.+ ++.++..|.+....-|||.=|
T Consensus 69 ~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~~g~iv~isS 135 (277)
T PRK05993 69 VLELSGGRLDALFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQGQGRIVQCSS 135 (277)
T ss_pred HHHHcCCCccEEEECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhcCCCEEEEECC
Confidence 3 689999765433 222 456777887665566888544
No 357
>PRK10262 thioredoxin reductase; Provisional
Probab=58.53 E-value=8.9 Score=38.30 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=20.7
Q ss_pred CCcceEEEeCcchHHHHHHHHHHH
Q 012398 327 LADQTFLFLGAGEAGTGIAELIAL 350 (464)
Q Consensus 327 l~d~riv~~GAGsAg~GiA~ll~~ 350 (464)
-+..+|||+|||+||+..|..+..
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~ 27 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAAR 27 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHH
Confidence 356789999999999999998865
No 358
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=58.48 E-value=11 Score=37.82 Aligned_cols=31 Identities=26% Similarity=0.427 Sum_probs=23.7
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccC
Q 012398 332 FLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKG 374 (464)
Q Consensus 332 iv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~G 374 (464)
|+|+|||.||+..|..|.. .|+ ++.++|+.-
T Consensus 2 ViIvGaG~aGl~~A~~L~~-----~G~-------~v~v~Er~~ 32 (385)
T TIGR01988 2 IVIVGGGMVGLALALALAR-----SGL-------KIALIEATP 32 (385)
T ss_pred EEEECCCHHHHHHHHHHhc-----CCC-------EEEEEeCCC
Confidence 8999999999999987765 354 466666653
No 359
>PLN02463 lycopene beta cyclase
Probab=58.35 E-value=12 Score=40.46 Aligned_cols=21 Identities=24% Similarity=0.518 Sum_probs=18.2
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 012398 330 QTFLFLGAGEAGTGIAELIAL 350 (464)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~ 350 (464)
-.|+|+|||.||+.+|..+.+
T Consensus 29 ~DVvIVGaGpAGLalA~~La~ 49 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSE 49 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHH
Confidence 478999999999999988754
No 360
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=58.25 E-value=13 Score=39.58 Aligned_cols=35 Identities=20% Similarity=0.315 Sum_probs=27.7
Q ss_pred CCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 327 LADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 327 l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
-...+|+|+|+|.||+..|..+.. .| .++.++|+.
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~-----~g-------~~V~lie~~ 172 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLAR-----KG-------YDVTIFEAR 172 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHh-----CC-------CeEEEEccC
Confidence 345799999999999999988754 24 368888875
No 361
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=58.11 E-value=12 Score=37.29 Aligned_cols=36 Identities=22% Similarity=0.349 Sum_probs=27.5
Q ss_pred CcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCc
Q 012398 328 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGL 375 (464)
Q Consensus 328 ~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GL 375 (464)
.+-.|+|+|||.||+..|..+.. .|+ ++.+++++.-
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~-----~G~-------~V~vlEk~~~ 55 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAK-----NGL-------KVCVLERSLA 55 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEecCCC
Confidence 46789999999999999987754 353 5777777643
No 362
>PRK12829 short chain dehydrogenase; Provisional
Probab=57.96 E-value=40 Score=31.85 Aligned_cols=36 Identities=28% Similarity=0.369 Sum_probs=24.9
Q ss_pred CCCcceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 326 TLADQTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 326 ~l~d~riv~~GA-GsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
.+++.+++|.|| |..|..+|+++++ .|. ++++++++
T Consensus 8 ~~~~~~vlItGa~g~iG~~~a~~L~~-----~g~-------~V~~~~r~ 44 (264)
T PRK12829 8 PLDGLRVLVTGGASGIGRAIAEAFAE-----AGA-------RVHVCDVS 44 (264)
T ss_pred ccCCCEEEEeCCCCcHHHHHHHHHHH-----CCC-------EEEEEeCC
Confidence 378899999998 5556666666643 353 58888763
No 363
>PRK07588 hypothetical protein; Provisional
Probab=57.90 E-value=14 Score=37.78 Aligned_cols=21 Identities=29% Similarity=0.313 Sum_probs=18.4
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 012398 330 QTFLFLGAGEAGTGIAELIAL 350 (464)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~ 350 (464)
.+|+|+|||.||+..|-.|.+
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~ 21 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRR 21 (391)
T ss_pred CeEEEECccHHHHHHHHHHHH
Confidence 379999999999999988865
No 364
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=57.85 E-value=12 Score=40.61 Aligned_cols=34 Identities=29% Similarity=0.425 Sum_probs=27.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCc
Q 012398 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGL 375 (464)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GL 375 (464)
-.|||+|+|.+|++||..+.. .|+ ++.++|+..+
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~-----rGl-------~V~LvEk~d~ 40 (508)
T PRK12266 7 YDLLVIGGGINGAGIARDAAG-----RGL-------SVLLCEQDDL 40 (508)
T ss_pred CCEEEECcCHHHHHHHHHHHH-----CCC-------eEEEEecCCC
Confidence 469999999999999988865 365 5888998643
No 365
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=57.66 E-value=15 Score=41.75 Aligned_cols=36 Identities=17% Similarity=0.232 Sum_probs=29.1
Q ss_pred CCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 326 TLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 326 ~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
+-...+|+|+|||.||+..|..|.. .|. ++.++|+.
T Consensus 428 ~~~~~~V~IIGaGpAGl~aA~~l~~-----~G~-------~V~v~e~~ 463 (752)
T PRK12778 428 EKNGKKVAVIGSGPAGLSFAGDLAK-----RGY-------DVTVFEAL 463 (752)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHH-----CCC-------eEEEEecC
Confidence 3457899999999999999998865 353 58888874
No 366
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=57.53 E-value=14 Score=43.76 Aligned_cols=40 Identities=18% Similarity=0.250 Sum_probs=31.8
Q ss_pred CCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc----CcccC
Q 012398 327 LADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK----GLIVS 378 (464)
Q Consensus 327 l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~----GLl~~ 378 (464)
-.+.||+|+|||.||+..|..|.. .|. ++.++|+. |++.-
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar-----~G~-------~VtVfE~~~~~GG~l~y 347 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAV-----EGF-------PVTVFEAFHDLGGVLRY 347 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEeeCCCCCceEEc
Confidence 457999999999999999999875 354 57888875 66543
No 367
>PLN02240 UDP-glucose 4-epimerase
Probab=57.43 E-value=24 Score=35.19 Aligned_cols=105 Identities=16% Similarity=0.201 Sum_probs=58.3
Q ss_pred CCCcceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCch------hchhhhh-hcCC
Q 012398 326 TLADQTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQH------FKKPWAH-EHAP 397 (464)
Q Consensus 326 ~l~d~riv~~GA-GsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~------~k~~fa~-~~~~ 397 (464)
.++..+|+|.|| |-.|..+++.|++. | .+++++|+..--.......+.. ....+.. +..+
T Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~-----g-------~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 69 (352)
T PLN02240 2 SLMGRTILVTGGAGYIGSHTVLQLLLA-----G-------YKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRD 69 (352)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHC-----C-------CEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCC
Confidence 466789999997 88888898888652 4 3688887542100000000000 0011111 1111
Q ss_pred CCCHHHHHhcCCCcEEEeccCCCCC----------------CCHHHHHHHHcCCCCcEEEE
Q 012398 398 IKSLLDAVKAIKPTMLMGTSGVGKT----------------FTKEVVEAMASFNEKPVIFA 442 (464)
Q Consensus 398 ~~~L~e~v~~vkptvLIG~S~~~g~----------------ft~evv~~Ma~~~erPIIFa 442 (464)
..++.++++..++|++|=+.+.... -+..+++.|.+.+-+.+||.
T Consensus 70 ~~~l~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~ 130 (352)
T PLN02240 70 KEALEKVFASTRFDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKKLVFS 130 (352)
T ss_pred HHHHHHHHHhCCCCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 2356777776789999977664321 12356677766555678874
No 368
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=56.96 E-value=12 Score=39.43 Aligned_cols=33 Identities=24% Similarity=0.240 Sum_probs=26.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccC
Q 012398 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKG 374 (464)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~G 374 (464)
-.+||+|||+||+..|..+.+. | .++.++|++.
T Consensus 5 yDvvVIGaGpaG~~aA~~aa~~-----G-------~~V~liE~~~ 37 (462)
T PRK06416 5 YDVIVIGAGPGGYVAAIRAAQL-----G-------LKVAIVEKEK 37 (462)
T ss_pred ccEEEECCCHHHHHHHHHHHHC-----C-------CcEEEEeccc
Confidence 3699999999999999987653 5 3688999763
No 369
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=56.91 E-value=40 Score=34.81 Aligned_cols=97 Identities=16% Similarity=0.090 Sum_probs=57.3
Q ss_pred CcceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchh--chhhhh-hcCCCCCHHH
Q 012398 328 ADQTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHF--KKPWAH-EHAPIKSLLD 403 (464)
Q Consensus 328 ~d~riv~~GA-GsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~--k~~fa~-~~~~~~~L~e 403 (464)
+++||+|.|| |-.|..+++.|.+ .|. +++.+|+..- ..+... ...+.. +..+..++..
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~-----~G~-------~V~~v~r~~~------~~~~~~~~~~~~~~~Dl~d~~~~~~ 81 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKA-----EGH-------YIIASDWKKN------EHMSEDMFCHEFHLVDLRVMENCLK 81 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHh-----CCC-------EEEEEEeccc------cccccccccceEEECCCCCHHHHHH
Confidence 4589999998 9999999998865 242 6888886431 001110 011111 1111123555
Q ss_pred HHhcCCCcEEEeccCCCC--C---------------CCHHHHHHHHcCCCCcEEEEcC
Q 012398 404 AVKAIKPTMLMGTSGVGK--T---------------FTKEVVEAMASFNEKPVIFALS 444 (464)
Q Consensus 404 ~v~~vkptvLIG~S~~~g--~---------------ft~evv~~Ma~~~erPIIFaLS 444 (464)
+++ ++|++|=+.+..+ . .+..+++.+.++.-+.+||.=|
T Consensus 82 ~~~--~~D~Vih~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~V~~SS 137 (370)
T PLN02695 82 VTK--GVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASS 137 (370)
T ss_pred HHh--CCCEEEEcccccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEEEEeCc
Confidence 555 4899997765321 1 2356777777766678998544
No 370
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=56.90 E-value=20 Score=40.35 Aligned_cols=137 Identities=16% Similarity=0.217 Sum_probs=76.4
Q ss_pred HHHHHHhcCCC-eeeeeecCCCccHHHHHHHHcC------CCceeecCccc---hhHHHHHHHHHH------HHHhCCCC
Q 012398 264 MTAVKQNYGEK-VLIQFEDFANHNAFELLSKYSS------SHLVFNDDIQG---TASVVLAGILSA------LKLVGGTL 327 (464)
Q Consensus 264 v~av~~~fGp~-~lIq~EDf~~~~af~iL~ryr~------~~~~FnDDiQG---TaaV~LAgll~A------lk~~g~~l 327 (464)
+..+.+.++.+ .+|-.-..+...-.+++++... ..|-+-|=++. .=-|...=||+= .+..+.-+
T Consensus 169 i~~~v~~~~~~~iiiAips~~~~~~~~i~~~l~~~~~~v~~lP~~~~l~~~~~~lreI~ieDLLgR~pV~~d~~~i~~~~ 248 (588)
T COG1086 169 IERVVEELGIQLILIAIPSASQEERRRILLRLARTGIAVRILPQLTDLKDLNGQLREIEIEDLLGRPPVALDTELIGAML 248 (588)
T ss_pred HHHHHHHcCCceEEEecCCCCHHHHHHHHHHHHhcCCcEEecCcHHHHHHhccccccCCHHHHhCCCCCCCCHHHHHhHc
Confidence 33344445433 4566667777777777777753 23333331110 000111111110 11123446
Q ss_pred CcceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhhh------------
Q 012398 328 ADQTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE------------ 394 (464)
Q Consensus 328 ~d~riv~~GA-GsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~------------ 394 (464)
++++|+|-|| ||.|-.++++++.. + .++|.++|+.=. ++..-.+++...
T Consensus 249 ~gK~vLVTGagGSiGsel~~qil~~-----~------p~~i~l~~~~E~-------~~~~i~~el~~~~~~~~~~~~igd 310 (588)
T COG1086 249 TGKTVLVTGGGGSIGSELCRQILKF-----N------PKEIILFSRDEY-------KLYLIDMELREKFPELKLRFYIGD 310 (588)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHhc-----C------CCEEEEecCchH-------HHHHHHHHHHhhCCCcceEEEecc
Confidence 7899999998 68899999998763 2 578999987411 122222333221
Q ss_pred cCCCCCHHHHHhcCCCcEEEeccC
Q 012398 395 HAPIKSLLDAVKAIKPTMLMGTSG 418 (464)
Q Consensus 395 ~~~~~~L~e~v~~vkptvLIG~S~ 418 (464)
-.+...+.+++++.|||+++=+.+
T Consensus 311 VrD~~~~~~~~~~~kvd~VfHAAA 334 (588)
T COG1086 311 VRDRDRVERAMEGHKVDIVFHAAA 334 (588)
T ss_pred cccHHHHHHHHhcCCCceEEEhhh
Confidence 112236899999999999997665
No 371
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=56.89 E-value=12 Score=38.10 Aligned_cols=33 Identities=15% Similarity=0.250 Sum_probs=25.2
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 329 DQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 329 d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
+..|+|+|||.||+..|-.|.+ .|+ ++.++|+.
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~-----~G~-------~V~liE~~ 37 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQ-----HGF-------SVAVLEHA 37 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhc-----CCC-------EEEEEcCC
Confidence 4579999999999999987754 354 46677764
No 372
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=56.86 E-value=16 Score=38.57 Aligned_cols=86 Identities=12% Similarity=0.122 Sum_probs=47.1
Q ss_pred HHHHHHhCCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhhh--
Q 012398 317 LSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE-- 394 (464)
Q Consensus 317 l~Alk~~g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~-- 394 (464)
..++.-....|.+.|++|+|.+.-..++++++.+ .|+. +..+-+. .... ++....+..+...
T Consensus 275 ~~~l~~~~~~l~gkrv~i~~~~~~~~~la~~l~e-----lGm~-------v~~~~~~---~~~~-~~~~~~~~~~~~~~~ 338 (410)
T cd01968 275 RPELAPYRARLEGKKAALYTGGVKSWSLVSALQD-----LGME-------VVATGTQ---KGTK-EDYERIKELLGEGTV 338 (410)
T ss_pred HHHHHHHHHHhCCCEEEEEcCCchHHHHHHHHHH-----CCCE-------EEEEecc---cCCH-HHHHHHHHHhCCCcE
Confidence 3344444456788999999988888999987754 5873 3333111 1111 1111111101000
Q ss_pred ---cCCCCCHHHHHhcCCCcEEEeccC
Q 012398 395 ---HAPIKSLLDAVKAIKPTMLMGTSG 418 (464)
Q Consensus 395 ---~~~~~~L~e~v~~vkptvLIG~S~ 418 (464)
..+...+.+.++..+||++||-|.
T Consensus 339 v~~~~~~~e~~~~i~~~~pDl~ig~s~ 365 (410)
T cd01968 339 IVDDANPRELKKLLKEKKADLLVAGGK 365 (410)
T ss_pred EEeCCCHHHHHHHHhhcCCCEEEECCc
Confidence 011123668888889999999754
No 373
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=56.84 E-value=16 Score=39.22 Aligned_cols=85 Identities=15% Similarity=0.267 Sum_probs=55.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchh---chhhhh-hcCCCCCHHHHH
Q 012398 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHF---KKPWAH-EHAPIKSLLDAV 405 (464)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~---k~~fa~-~~~~~~~L~e~v 405 (464)
.+||++|||-.|..+|..|++- |- .+|++.|+. .+....+... +.+.+. +..+...|.++|
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~-----~d------~~V~iAdRs----~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li 66 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQN-----GD------GEVTIADRS----KEKCARIAELIGGKVEALQVDAADVDALVALI 66 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhC-----CC------ceEEEEeCC----HHHHHHHHhhccccceeEEecccChHHHHHHH
Confidence 4799999999999999998752 31 589988873 2111111111 111221 334446799999
Q ss_pred hcCCCcEEEeccCCCCCCCHHHHHHHHc
Q 012398 406 KAIKPTMLMGTSGVGKTFTKEVVEAMAS 433 (464)
Q Consensus 406 ~~vkptvLIG~S~~~g~ft~evv~~Ma~ 433 (464)
++ .|++|.+-- +-++..++++-.+
T Consensus 67 ~~--~d~VIn~~p--~~~~~~i~ka~i~ 90 (389)
T COG1748 67 KD--FDLVINAAP--PFVDLTILKACIK 90 (389)
T ss_pred hc--CCEEEEeCC--chhhHHHHHHHHH
Confidence 98 699987654 3578888877665
No 374
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=56.82 E-value=13 Score=39.42 Aligned_cols=40 Identities=25% Similarity=0.430 Sum_probs=33.3
Q ss_pred CCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCc
Q 012398 325 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGL 375 (464)
Q Consensus 325 ~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GL 375 (464)
.+|++|=||++|||..|.-+++||+.. |+ ++|-+||-+-+
T Consensus 70 ~kl~~syVVVVG~GgVGSwv~nmL~RS-----G~------qKi~iVDfdqV 109 (430)
T KOG2018|consen 70 EKLTNSYVVVVGAGGVGSWVANMLLRS-----GV------QKIRIVDFDQV 109 (430)
T ss_pred HHhcCcEEEEEecCchhHHHHHHHHHh-----cC------ceEEEechhhc
Confidence 478899999999999999999999874 54 67888886644
No 375
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=56.82 E-value=18 Score=38.72 Aligned_cols=54 Identities=26% Similarity=0.365 Sum_probs=37.9
Q ss_pred HHcCCCceeecCccchhHHHHHHHHHHHHHhCCCCCcceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEc
Q 012398 293 KYSSSHLVFNDDIQGTASVVLAGILSALKLVGGTLADQTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVD 371 (464)
Q Consensus 293 ryr~~~~~FnDDiQGTaaV~LAgll~Alk~~g~~l~d~riv~~GA-GsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD 371 (464)
+|......+.|=..||+ .++++++++|.|| |..|..+|+.+.+ .|. +++++|
T Consensus 157 ~~~~~~~~~~d~~~~ta---------------~sl~gK~VLITGASgGIG~aLA~~La~-----~G~-------~Vi~l~ 209 (406)
T PRK07424 157 AYYCGTFTLVDKLMGTA---------------LSLKGKTVAVTGASGTLGQALLKELHQ-----QGA-------KVVALT 209 (406)
T ss_pred ceeeeeEEEeehhcCcc---------------cCCCCCEEEEeCCCCHHHHHHHHHHHH-----CCC-------EEEEEe
Confidence 55566788999888888 2467789999998 5566666666643 353 567776
Q ss_pred cc
Q 012398 372 SK 373 (464)
Q Consensus 372 ~~ 373 (464)
++
T Consensus 210 r~ 211 (406)
T PRK07424 210 SN 211 (406)
T ss_pred CC
Confidence 64
No 376
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=56.75 E-value=68 Score=36.70 Aligned_cols=41 Identities=12% Similarity=0.135 Sum_probs=27.3
Q ss_pred hcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCC
Q 012398 406 KAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTS 448 (464)
Q Consensus 406 ~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaLSNPt~ 448 (464)
+.++|+++|..++.. +.-.-+.+-.++-+|=|.+=.-||..
T Consensus 408 ~~~~~~~ilasnTS~--l~i~~la~~~~~p~r~~g~HffnP~~ 448 (699)
T TIGR02440 408 QECAAHTIFASNTSS--LPIGQIAAAASRPENVIGLHYFSPVE 448 (699)
T ss_pred hhCCCCcEEEeCCCC--CCHHHHHHhcCCcccEEEEecCCccc
Confidence 445799999877754 54444444335566778888889874
No 377
>PRK06185 hypothetical protein; Provisional
Probab=56.62 E-value=13 Score=38.16 Aligned_cols=34 Identities=18% Similarity=0.323 Sum_probs=25.8
Q ss_pred CcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 328 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 328 ~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
.+..|+|+|||.+|+..|-.|.+ .|+ ++.++|++
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~-----~G~-------~v~liE~~ 38 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLAR-----AGV-------DVTVLEKH 38 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEecC
Confidence 34679999999999999977754 365 46667765
No 378
>PF06690 DUF1188: Protein of unknown function (DUF1188); InterPro: IPR009573 This family consists of several hypothetical archaeal proteins of around 260 residues in length, which seem to be specific to Methanobacterium, Methanococcus and Methanopyrus species. The function of this family is unknown.
Probab=56.36 E-value=23 Score=35.95 Aligned_cols=90 Identities=22% Similarity=0.376 Sum_probs=59.2
Q ss_pred CCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhhhcCCCCCHHH
Q 012398 324 GGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHAPIKSLLD 403 (464)
Q Consensus 324 g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~L~e 403 (464)
|..++ +++|+||=--|.+||+.|... + +|+++|-+--+ .+-+ +....|.. .+.+
T Consensus 39 ~~~~k--~~lI~G~YltG~~iA~~L~~~-----------~--eV~lvDI~p~l----k~ll-~~~i~F~~------~~~~ 92 (252)
T PF06690_consen 39 GEEFK--QALIFGAYLTGNFIASALSKK-----------C--EVTLVDIHPHL----KELL-NENIKFME------FRNG 92 (252)
T ss_pred ccccc--eEEEEEEEeehHHHHHHhccC-----------c--eEEEEeCcHHH----HHHh-cCCCceee------ccCC
Confidence 45555 999999988899999988542 2 79999974111 1101 11112221 1111
Q ss_pred HHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCC
Q 012398 404 AVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPT 447 (464)
Q Consensus 404 ~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaLSNPt 447 (464)
+ .++||++|=++|-||+ +++.++.. .|=+|-.=||.
T Consensus 93 -~-~~~~DlIID~TGlGGv-~~~~Ls~~-----~p~v~IVEdP~ 128 (252)
T PF06690_consen 93 -L-EGNPDLIIDTTGLGGV-DPDFLSKF-----NPKVFIVEDPK 128 (252)
T ss_pred -C-CCCCCEEEECCCCCCC-CHHHHhcc-----CCCEEEEECCC
Confidence 1 2379999999999985 99999877 36677778888
No 379
>PRK08013 oxidoreductase; Provisional
Probab=56.36 E-value=14 Score=38.20 Aligned_cols=33 Identities=12% Similarity=0.256 Sum_probs=24.9
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 329 DQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 329 d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
+-.|+|+|||.||+..|-.|.. .|+ ++.++|++
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~-----~G~-------~v~viE~~ 35 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQG-----SGL-------RVAVLEQR 35 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhh-----CCC-------EEEEEeCC
Confidence 3479999999999999977754 365 46666654
No 380
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=56.36 E-value=17 Score=37.79 Aligned_cols=35 Identities=23% Similarity=0.337 Sum_probs=24.7
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcc
Q 012398 332 FLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLI 376 (464)
Q Consensus 332 iv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl 376 (464)
|+|+|||.||+.+|-.|.+. ..|+ ++.++|+.-.+
T Consensus 2 viIvGaG~AGl~lA~~L~~~---~~g~-------~V~lle~~~~~ 36 (370)
T TIGR01789 2 CIIVGGGLAGGLIALRLQRA---RPDF-------RIRVIEAGRTI 36 (370)
T ss_pred EEEECccHHHHHHHHHHHhc---CCCC-------eEEEEeCCCCC
Confidence 78999999999999877643 1243 46666665433
No 381
>PRK12831 putative oxidoreductase; Provisional
Probab=56.25 E-value=15 Score=39.47 Aligned_cols=35 Identities=17% Similarity=0.210 Sum_probs=27.8
Q ss_pred CCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 327 LADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 327 l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
-...+|+|+|||.||+..|..+.. .|. ++.++|+.
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~-----~G~-------~V~v~e~~ 172 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAK-----MGY-------DVTIFEAL 172 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHh-----CCC-------eEEEEecC
Confidence 356789999999999999998875 353 57788863
No 382
>PRK08244 hypothetical protein; Provisional
Probab=56.24 E-value=13 Score=39.60 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=18.7
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 012398 330 QTFLFLGAGEAGTGIAELIAL 350 (464)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~ 350 (464)
..|+|+|||.+|+..|-.|..
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~ 23 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELAL 23 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHH
Confidence 469999999999999988865
No 383
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=56.08 E-value=16 Score=37.84 Aligned_cols=46 Identities=24% Similarity=0.294 Sum_probs=32.9
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc--CcccCCCccCCch
Q 012398 329 DQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK--GLIVSSRKESLQH 386 (464)
Q Consensus 329 d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~--GLl~~~r~~~l~~ 386 (464)
...|+|+|||.||+..|-.|.. .|+ ++.++++. .+...+|...+.+
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~-----~G~-------~V~l~E~~~~~~~~~~r~~~l~~ 49 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALAR-----AGL-------DVTLLERAPRELLERGRGIALSP 49 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEccCccccccCceeeeecH
Confidence 3579999999999999988865 465 58888886 4444445433433
No 384
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=56.06 E-value=17 Score=36.77 Aligned_cols=34 Identities=26% Similarity=0.247 Sum_probs=27.0
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcc
Q 012398 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLI 376 (464)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl 376 (464)
.|+|+|||.+|+.+|-.|.+ .|. ++.++|+....
T Consensus 2 dvvIIGaGi~G~s~A~~La~-----~g~-------~V~l~e~~~~~ 35 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAK-----HGK-------KTLLLEQFDLP 35 (380)
T ss_pred cEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEeccCCC
Confidence 48999999999999988764 252 68889987553
No 385
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=55.95 E-value=10 Score=40.92 Aligned_cols=38 Identities=24% Similarity=0.297 Sum_probs=32.9
Q ss_pred CCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 325 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 325 ~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
+.|++-+|+++|+|+.|.-+++.|+.. |+ .+|.++|.+
T Consensus 16 ~~L~~s~VlliG~gglGsEilKNLvL~-----GI------g~~tIvD~~ 53 (425)
T cd01493 16 AALESAHVCLLNATATGTEILKNLVLP-----GI------GSFTIVDGS 53 (425)
T ss_pred HHHhhCeEEEEcCcHHHHHHHHHHHHc-----CC------CeEEEECCC
Confidence 357899999999999999999999874 65 689999986
No 386
>COG0565 LasT rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=55.94 E-value=73 Score=32.29 Aligned_cols=94 Identities=12% Similarity=0.182 Sum_probs=56.2
Q ss_pred CcceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhhhc-------CCCC
Q 012398 328 ADQTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEH-------APIK 399 (464)
Q Consensus 328 ~d~riv~~GA-GsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~~-------~~~~ 399 (464)
...+||++.. ++.++|-+- .+|+. -|++ ++++|+.+ ..++++-..+|... .-..
T Consensus 3 ~~i~iVLVep~~~gNIG~vA---RaMKN-fGl~------eL~LV~Pr--------~~~~eeA~a~A~gA~dile~A~i~~ 64 (242)
T COG0565 3 ENIRIVLVEPSHPGNIGSVA---RAMKN-FGLS------ELRLVNPR--------AGLDEEARALAAGARDILENAKIVD 64 (242)
T ss_pred CccEEEEEcCCCCccHHHHH---HHHHh-CCcc------eEEEECCC--------CCCCHHHHHHhccchhhhccCeeec
Confidence 4567777654 667777543 34433 5875 68888874 12344434444321 1136
Q ss_pred CHHHHHhcCCCcEEEeccCCCCCCC---------HHHHHHHHcCCCCcEEE
Q 012398 400 SLLDAVKAIKPTMLMGTSGVGKTFT---------KEVVEAMASFNEKPVIF 441 (464)
Q Consensus 400 ~L~e~v~~vkptvLIG~S~~~g~ft---------~evv~~Ma~~~erPIIF 441 (464)
||+|||.. .+.+||+|+...... .+.++++++..+--|||
T Consensus 65 tL~eAl~d--~~~v~aTtar~r~~~~~~~~P~e~~~~l~~~~~~~~vAlvF 113 (242)
T COG0565 65 TLEEALAD--CDLVVATTARSRDLLRPLRTPREAAPELLEKAKGGKVALVF 113 (242)
T ss_pred CHHHHhcC--CCEEEEeccccCcccccccCHHHHHHHHHHHhcCCCeEEEE
Confidence 99999998 999999997664322 24455554423445666
No 387
>PRK11445 putative oxidoreductase; Provisional
Probab=55.83 E-value=13 Score=37.79 Aligned_cols=20 Identities=35% Similarity=0.594 Sum_probs=17.7
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 012398 331 TFLFLGAGEAGTGIAELIAL 350 (464)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~ 350 (464)
.|+|+|||.||...|..|..
T Consensus 3 dV~IvGaGpaGl~~A~~La~ 22 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAG 22 (351)
T ss_pred eEEEECCCHHHHHHHHHHhc
Confidence 58999999999999988754
No 388
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=55.69 E-value=15 Score=39.00 Aligned_cols=31 Identities=26% Similarity=0.627 Sum_probs=24.1
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
.++|+|||.||+.+|..|.+ .| .++.++|++
T Consensus 3 DvvIIGaG~aGlsaA~~La~-----~G-------~~V~viEk~ 33 (377)
T TIGR00031 3 DYIIVGAGLSGIVLANILAQ-----LN-------KRVLVVEKR 33 (377)
T ss_pred cEEEECCCHHHHHHHHHHHh-----CC-------CeEEEEecC
Confidence 58999999999999988864 24 356777764
No 389
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=55.66 E-value=41 Score=31.60 Aligned_cols=159 Identities=16% Similarity=0.171 Sum_probs=91.4
Q ss_pred hhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecC--ceeeccCCCCCC--cccccchhhhHHhhhCCCCCCceeeE
Q 012398 151 IFRRPQGLYISLKEKGKILEVLKNWPERNIQVIVVTDG--ERILGLGDLGCQ--GMGIPVGKLSLYTALGGLRPSACLPI 226 (464)
Q Consensus 151 i~r~p~gly~s~~d~g~i~~~l~n~~~~~v~viVVTDG--~rILGLGDlG~~--gm~I~~GKl~Ly~a~gGI~P~~~lPV 226 (464)
+-+.++|+-++..|.....+.++.+...++.|+.+-.. ..-..+--.|.+ .+|-..|+.++-....+ ..|
T Consensus 52 i~~~~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~d~~~~~~~~~~~~v~~d~~~~G~~~a~~l~~~~~~~------~~v 125 (257)
T PF13407_consen 52 ISQGVDGIIVSPVDPDSLAPFLEKAKAAGIPVVTVDSDEAPDSPRAAYVGTDNYEAGKLAAEYLAEKLGAK------GKV 125 (257)
T ss_dssp HHTTESEEEEESSSTTTTHHHHHHHHHTTSEEEEESSTHHTTSTSSEEEEE-HHHHHHHHHHHHHHHHTTT------EEE
T ss_pred HHhcCCEEEecCCCHHHHHHHHHHHhhcCceEEEEeccccccccceeeeeccHHHHHHHHHHHHHHHhccC------ceE
Confidence 46779999999999988888888887888888887555 111222223333 45666677777666554 445
Q ss_pred EeecCCCccccccCccccccccCCCChhhHHHHHHHHHHHHHHhcCCCeeee---eecCCCccHHHHHHHHcCCCceeec
Q 012398 227 TIDVGTNNEQLLNDEFYIGLRQKRATGQEYAELLQEFMTAVKQNYGEKVLIQ---FEDFANHNAFELLSKYSSSHLVFND 303 (464)
Q Consensus 227 ~LDvgTnne~Ll~Dp~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~~lIq---~EDf~~~~af~iL~ryr~~~~~FnD 303 (464)
++=.|.. ......+.++-|.+++++ ++.-.++. ..+.....+.+..+++-...| -|
T Consensus 126 ~~~~~~~------------------~~~~~~~r~~g~~~~l~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~--~~ 184 (257)
T PF13407_consen 126 LILSGSP------------------GNPNTQERLEGFRDALKE-YPGVEIVDEYEYTDWDPEDARQAIENLLQANP--VD 184 (257)
T ss_dssp EEEESST------------------TSHHHHHHHHHHHHHHHH-CTTEEEEEEEEECTTSHHHHHHHHHHHHHHTT--EE
T ss_pred EeccCCC------------------CchHHHHHHHHHHHHHhh-cceeeeeeeeeccCCCHHHHHHHHHHhhhcCC--ce
Confidence 5444421 112333557778888887 64312222 236777777766666532222 11
Q ss_pred CccchhHHHHHHHHHHHHHhCCCCCcceEEEeCc
Q 012398 304 DIQGTASVVLAGILSALKLVGGTLADQTFLFLGA 337 (464)
Q Consensus 304 DiQGTaaV~LAgll~Alk~~g~~l~d~riv~~GA 337 (464)
=|=.+....+-|++.|++-.|+ -.+..|+-+|.
T Consensus 185 ~i~~~~~~~~~g~~~al~~~g~-~~~~~v~g~d~ 217 (257)
T PF13407_consen 185 AIIACNDGMALGAAQALQQAGR-AGKVIVVGFDG 217 (257)
T ss_dssp EEEESSHHHHHHHHHHHHHTTC-TTTSEEEEEEC
T ss_pred EEEeCCChHHHHHHHHHHHcCC-cccceeecCCC
Confidence 1122223344477888888877 22333444443
No 390
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=55.63 E-value=18 Score=37.22 Aligned_cols=21 Identities=24% Similarity=0.246 Sum_probs=18.4
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 012398 330 QTFLFLGAGEAGTGIAELIAL 350 (464)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~ 350 (464)
.+|+|+|||.||+..|-.|.+
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~ 24 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAK 24 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHh
Confidence 479999999999999987754
No 391
>PRK06545 prephenate dehydrogenase; Validated
Probab=55.58 E-value=35 Score=35.44 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=19.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHH
Q 012398 330 QTFLFLGAGEAGTGIAELIALE 351 (464)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~a 351 (464)
.||.|+|+|..|.++|..|...
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~ 22 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAA 22 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhc
Confidence 3799999999999999998653
No 392
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=55.58 E-value=1.2e+02 Score=31.98 Aligned_cols=136 Identities=15% Similarity=0.251 Sum_probs=79.6
Q ss_pred HHHHHHHHHHhcCCCeeeeeecCCCccHHHHHHHHcCCCceeec---CccchhHHHHHHHHHHHHHhC-CCCCcceEEEe
Q 012398 260 LQEFMTAVKQNYGEKVLIQFEDFANHNAFELLSKYSSSHLVFND---DIQGTASVVLAGILSALKLVG-GTLADQTFLFL 335 (464)
Q Consensus 260 idefv~av~~~fGp~~lIq~EDf~~~~af~iL~ryr~~~~~FnD---DiQGTaaV~LAgll~Alk~~g-~~l~d~riv~~ 335 (464)
+.+.+..+.. | .++ |-+--.. ....+.+.+| .++||.|= ..|= +=+||=++.-.+..| +++++.+|+++
T Consensus 90 l~Dtarvls~-y-~D~-iviR~~~-~~~~~~~a~~-~~vPVINa~~~~~HP--tQaLaDl~Ti~e~~g~~~l~gl~va~v 162 (334)
T PRK12562 90 IKDTARVLGR-M-YDG-IQYRGHG-QEVVETLAEY-AGVPVWNGLTNEFHP--TQLLADLLTMQEHLPGKAFNEMTLVYA 162 (334)
T ss_pred HHHHHHHHHH-h-CCE-EEEECCc-hHHHHHHHHh-CCCCEEECCCCCCCh--HHHHHHHHHHHHHhCCCCcCCcEEEEE
Confidence 4455554444 4 222 2233322 2233333444 47999993 3333 345677777666665 46999999999
Q ss_pred CcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhhhcC-C---CCCHHHHHhcCCCc
Q 012398 336 GAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEHA-P---IKSLLDAVKAIKPT 411 (464)
Q Consensus 336 GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~~~-~---~~~L~e~v~~vkpt 411 (464)
|-+.- .+++-++.++.+ .|+ ++.++-.+|+.-.. + ..+.-+.+++... . ..++.||+++ +|
T Consensus 163 GD~~~--~v~~S~~~~~~~-~G~-------~v~~~~P~~~~~~~--~-~~~~~~~~~~~~g~~~~~~~d~~~a~~~--aD 227 (334)
T PRK12562 163 GDARN--NMGNSMLEAAAL-TGL-------DLRLVAPQACWPEA--S-LVAECSALAQKHGGKITLTEDIAAGVKG--AD 227 (334)
T ss_pred CCCCC--CHHHHHHHHHHH-cCC-------EEEEECCcccCCcH--H-HHHHHHHHHHHcCCeEEEEcCHHHHhCC--CC
Confidence 98742 367777666655 464 68888887763321 1 1111123443211 1 2689999998 99
Q ss_pred EEEecc
Q 012398 412 MLMGTS 417 (464)
Q Consensus 412 vLIG~S 417 (464)
|+.-.+
T Consensus 228 vvyt~~ 233 (334)
T PRK12562 228 FIYTDV 233 (334)
T ss_pred EEEEcC
Confidence 999865
No 393
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=55.51 E-value=14 Score=40.09 Aligned_cols=37 Identities=24% Similarity=0.334 Sum_probs=29.2
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
||+++|||+.|+-+++.|+.+ |+...+ ..+|.++|.+
T Consensus 1 kVlvVGaGGlGcE~lKnLal~-----Gv~~g~-~G~I~IvD~D 37 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALM-----GVGTGE-SGEITVTDMD 37 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CCCcCC-CCeEEEECCC
Confidence 689999999999999999875 552111 2689999986
No 394
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=55.45 E-value=15 Score=37.85 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=19.2
Q ss_pred cceEEEeCcchHHHHHHHHHHH
Q 012398 329 DQTFLFLGAGEAGTGIAELIAL 350 (464)
Q Consensus 329 d~riv~~GAGsAg~GiA~ll~~ 350 (464)
..+|+|+|||.||+..|-.|.+
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~ 23 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHL 23 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHh
Confidence 3679999999999999988765
No 395
>PRK06841 short chain dehydrogenase; Provisional
Probab=55.45 E-value=23 Score=33.43 Aligned_cols=36 Identities=31% Similarity=0.445 Sum_probs=25.8
Q ss_pred CCCcceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 326 TLADQTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 326 ~l~d~riv~~GA-GsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
++++.+++|.|| |..|..+|+.+.+ .|. ++++++++
T Consensus 12 ~~~~k~vlItGas~~IG~~la~~l~~-----~G~-------~Vi~~~r~ 48 (255)
T PRK06841 12 DLSGKVAVVTGGASGIGHAIAELFAA-----KGA-------RVALLDRS 48 (255)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHH-----CCC-------EEEEEeCC
Confidence 477889999997 6667777777653 353 57777764
No 396
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=55.40 E-value=50 Score=32.76 Aligned_cols=32 Identities=16% Similarity=0.243 Sum_probs=25.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
.||.|+|.|..|..+|..+.. .|. +++++|++
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~-----~g~-------~v~~~d~~ 34 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLK-----AGY-------SLVVYDRN 34 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHH-----CCC-------eEEEEcCC
Confidence 479999999999999999865 242 56777764
No 397
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=55.36 E-value=15 Score=38.54 Aligned_cols=33 Identities=30% Similarity=0.476 Sum_probs=27.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccC
Q 012398 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKG 374 (464)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~G 374 (464)
-.|||+|||+||+..|..+.+ .| .++.++|++.
T Consensus 4 ~dvvVIG~GpaG~~aA~~l~~-----~g-------~~V~liE~~~ 36 (438)
T PRK07251 4 YDLIVIGFGKAGKTLAAKLAS-----AG-------KKVALVEESK 36 (438)
T ss_pred cCEEEECCCHHHHHHHHHHHh-----CC-------CEEEEEecCC
Confidence 469999999999999988865 25 4699999863
No 398
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=55.35 E-value=1e+02 Score=31.63 Aligned_cols=147 Identities=20% Similarity=0.264 Sum_probs=85.9
Q ss_pred HHHHHHHcCCCceeecC-ccchhHHHHHHHHHHHHHhCCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCe
Q 012398 288 FELLSKYSSSHLVFNDD-IQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKK 366 (464)
Q Consensus 288 f~iL~ryr~~~~~FnDD-iQGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~ 366 (464)
.+.+.+| .++||+|=+ -..=-.=+|+=++.-.+..| .|++.||+++|-.. .+++-++.++.+ .|+ +
T Consensus 108 ~~~~a~~-~~vPVINa~~~~~HPtQaL~Dl~Ti~e~~g-~l~g~~v~~vGd~~---~v~~Sl~~~l~~-~g~-------~ 174 (304)
T TIGR00658 108 VEELAKY-ASVPVINGLTDLFHPCQALADLLTIIEHFG-KLKGVKVVYVGDGN---NVCNSLMLAGAK-LGM-------D 174 (304)
T ss_pred HHHHHHh-CCCCEEECCCCCCChHHHHHHHHHHHHHhC-CCCCcEEEEEeCCC---chHHHHHHHHHH-cCC-------E
Confidence 3333343 478999942 22222345666666666666 49999999999863 478887777765 464 6
Q ss_pred EEEEcccCcccCCCccCCchhchhhhhhcC----CCCCHHHHHhcCCCcEEEeccCC----CC------------CCCHH
Q 012398 367 IWLVDSKGLIVSSRKESLQHFKKPWAHEHA----PIKSLLDAVKAIKPTMLMGTSGV----GK------------TFTKE 426 (464)
Q Consensus 367 i~lvD~~GLl~~~r~~~l~~~k~~fa~~~~----~~~~L~e~v~~vkptvLIG~S~~----~g------------~ft~e 426 (464)
+.++-.+++.-+. ...+.-+.+++... ...++.+++++ +||+.-.+-+ .. .+|+|
T Consensus 175 v~~~~P~~~~~~~---~~~~~~~~~~~~~g~~~~~~~d~~~a~~~--aDvvy~~~w~~~~~~~~~~~~~~~~~~y~l~~~ 249 (304)
T TIGR00658 175 VVVATPEGYEPDA---DIVKKAQEIAKENGGSVELTHDPVEAVKG--ADVIYTDVWVSMGEEDKKEERLKLFRPYQVNEE 249 (304)
T ss_pred EEEECCchhcCCH---HHHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCEEEEcCcccCccccccHHHHHHhcCCcCCHH
Confidence 8888887763321 12122223343211 13689999998 9999876411 00 36777
Q ss_pred HHHHHHcCCCCcEEEEcCCCCC-CCCCCHHH
Q 012398 427 VVEAMASFNEKPVIFALSNPTS-QSECTAEE 456 (464)
Q Consensus 427 vv~~Ma~~~erPIIFaLSNPt~-~~E~tped 456 (464)
.++.+ .++-||+- .=|.. .-|++.+-
T Consensus 250 ~l~~~---~~~~ivmH-plP~~rg~Ei~~~V 276 (304)
T TIGR00658 250 LMELA---KPEVIFMH-CLPAHRGEEVTDEV 276 (304)
T ss_pred HHhhc---CCCCEEEC-CCCCCCCceeCHHH
Confidence 66654 35556652 23432 24766543
No 399
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=55.34 E-value=12 Score=38.51 Aligned_cols=31 Identities=26% Similarity=0.464 Sum_probs=24.3
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
.|+|+|||.||+..|-.|.. .|+ ++.++|+.
T Consensus 4 dV~IVGaG~aGl~~A~~L~~-----~G~-------~v~viE~~ 34 (405)
T PRK05714 4 DLLIVGAGMVGSALALALQG-----SGL-------EVLLLDGG 34 (405)
T ss_pred cEEEECccHHHHHHHHHHhc-----CCC-------EEEEEcCC
Confidence 68999999999999988754 364 46677764
No 400
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=55.30 E-value=15 Score=43.92 Aligned_cols=35 Identities=20% Similarity=0.290 Sum_probs=28.5
Q ss_pred CCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 327 LADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 327 l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
-...||+|+|||.||+..|..|.. .|. ++.++|+.
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar-----~G~-------~VtV~Ek~ 571 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLAR-----AGH-------PVTVFERE 571 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHH-----cCC-------eEEEEecc
Confidence 456899999999999999999865 353 57888875
No 401
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=55.26 E-value=12 Score=38.59 Aligned_cols=39 Identities=15% Similarity=0.182 Sum_probs=33.4
Q ss_pred CCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccC
Q 012398 325 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKG 374 (464)
Q Consensus 325 ~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~G 374 (464)
++|+.-+|+|+|+|..|.-+|+.|+.+ |+ .+|.++|.+-
T Consensus 22 ~KL~~SrVLVVG~GGLGsEVAKnLaLA-----GV------GsItIvDdD~ 60 (287)
T PTZ00245 22 QQLMHTSVALHGVAGAAAEAAKNLVLA-----GV------RAVAVADEGL 60 (287)
T ss_pred HHHhhCeEEEECCCchHHHHHHHHHHc-----CC------CeEEEecCCc
Confidence 578899999999999999999999875 64 5899998763
No 402
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=55.16 E-value=18 Score=36.82 Aligned_cols=35 Identities=23% Similarity=0.315 Sum_probs=27.9
Q ss_pred CCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 327 LADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 327 l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
-..++|+|+|+|.||+.+|..+.+ .| .++.++|+.
T Consensus 16 ~~~~~VvIIG~G~aGl~aA~~l~~-----~g-------~~v~lie~~ 50 (352)
T PRK12770 16 PTGKKVAIIGAGPAGLAAAGYLAC-----LG-------YEVHVYDKL 50 (352)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHH-----CC-------CcEEEEeCC
Confidence 345799999999999999998864 24 368888876
No 403
>PRK07326 short chain dehydrogenase; Provisional
Probab=55.10 E-value=16 Score=33.98 Aligned_cols=35 Identities=23% Similarity=0.261 Sum_probs=25.7
Q ss_pred CCcceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 327 LADQTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 327 l~d~riv~~GA-GsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
+.+.+++|.|| |..|..+|+.+++ .|. ++++++++
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~~-----~g~-------~V~~~~r~ 39 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALLA-----EGY-------KVAITARD 39 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHH-----CCC-------EEEEeeCC
Confidence 45688999997 7788888887753 352 58888774
No 404
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=55.07 E-value=91 Score=28.38 Aligned_cols=37 Identities=24% Similarity=0.262 Sum_probs=25.2
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHH--cCCCCcEEEEcCCCC
Q 012398 409 KPTMLMGTSGVGKTFTKEVVEAMA--SFNEKPVIFALSNPT 447 (464)
Q Consensus 409 kptvLIG~S~~~g~ft~evv~~Ma--~~~erPIIFaLSNPt 447 (464)
+-|++|++|..| -|+++++.+. +...-|+|-=-+||.
T Consensus 79 ~~D~~i~iS~sG--~t~~~~~~~~~a~~~g~~ii~iT~~~~ 117 (154)
T TIGR00441 79 KGDVLLGISTSG--NSKNVLKAIEAAKDKGMKTITLAGKDG 117 (154)
T ss_pred CCCEEEEEcCCC--CCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 469999999976 6888877654 444566666444454
No 405
>PRK07538 hypothetical protein; Provisional
Probab=55.05 E-value=14 Score=38.30 Aligned_cols=20 Identities=25% Similarity=0.355 Sum_probs=17.1
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 012398 331 TFLFLGAGEAGTGIAELIAL 350 (464)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~ 350 (464)
+|+|+|||.||+..|-.|.+
T Consensus 2 dV~IVGaG~aGl~~A~~L~~ 21 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQ 21 (413)
T ss_pred eEEEECCCHHHHHHHHHHHh
Confidence 68999999999999987754
No 406
>PRK14694 putative mercuric reductase; Provisional
Probab=54.99 E-value=16 Score=38.96 Aligned_cols=34 Identities=12% Similarity=0.209 Sum_probs=27.1
Q ss_pred CcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 328 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 328 ~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
.+-.++|+|||+||+..|..+.++ | .++.++|+.
T Consensus 5 ~~~dviVIGaG~aG~~aA~~l~~~-----g-------~~v~lie~~ 38 (468)
T PRK14694 5 NNLHIAVIGSGGSAMAAALKATER-----G-------ARVTLIERG 38 (468)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhC-----C-------CcEEEEEcc
Confidence 345799999999999999988763 4 368888864
No 407
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=54.92 E-value=41 Score=37.06 Aligned_cols=97 Identities=16% Similarity=0.132 Sum_probs=63.2
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhh-hcC---CCCCHHHHHh
Q 012398 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAH-EHA---PIKSLLDAVK 406 (464)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~-~~~---~~~~L~e~v~ 406 (464)
+|-|+|-|..|.++|.-|+. .|. ++.+.|+. .++ ..+....++. ... ...++.|+++
T Consensus 8 ~IG~IGLG~MG~~mA~nL~~-----~G~-------~V~V~NRt----~~k---~~~l~~~~~~~Ga~~~~~a~s~~e~v~ 68 (493)
T PLN02350 8 RIGLAGLAVMGQNLALNIAE-----KGF-------PISVYNRT----TSK---VDETVERAKKEGNLPLYGFKDPEDFVL 68 (493)
T ss_pred CEEEEeeHHHHHHHHHHHHh-----CCC-------eEEEECCC----HHH---HHHHHHhhhhcCCcccccCCCHHHHHh
Confidence 68999999999999999976 364 57777763 222 2222221222 111 3468999997
Q ss_pred cC-CCcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEEcCCCC
Q 012398 407 AI-KPTMLMGTSGVGKTFTKEVVEAMASF-NEKPVIFALSNPT 447 (464)
Q Consensus 407 ~v-kptvLIG~S~~~g~ft~evv~~Ma~~-~erPIIFaLSNPt 447 (464)
.+ +|+++| ++-..+.-.++|+..+... .+.-||.=+||=.
T Consensus 69 ~l~~~dvIi-~~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~ 110 (493)
T PLN02350 69 SIQKPRSVI-ILVKAGAPVDQTIKALSEYMEPGDCIIDGGNEW 110 (493)
T ss_pred cCCCCCEEE-EECCCcHHHHHHHHHHHhhcCCCCEEEECCCCC
Confidence 65 589888 4544556667776554443 4677999999855
No 408
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=54.83 E-value=15 Score=34.92 Aligned_cols=36 Identities=28% Similarity=0.368 Sum_probs=25.2
Q ss_pred CCCcceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 326 TLADQTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 326 ~l~d~riv~~GA-GsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
++++.+++|.|| |..|..||+.+.+ .|. +++++|++
T Consensus 3 ~l~~~~vlItGas~~iG~~ia~~l~~-----~G~-------~v~~~~r~ 39 (257)
T PRK07067 3 RLQGKVALLTGAASGIGEAVAERYLA-----EGA-------RVVIADIK 39 (257)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHH-----cCC-------EEEEEcCC
Confidence 477889999997 5566667776654 353 57788764
No 409
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=54.82 E-value=2.5e+02 Score=28.93 Aligned_cols=167 Identities=14% Similarity=0.157 Sum_probs=91.9
Q ss_pred HHHHHHHHHHhcCCCeeeeeecCCCccHHHHHHHHcCCCceeec--CccchhHHHHHHHHHHHHHhCCCCCcceEEEeCc
Q 012398 260 LQEFMTAVKQNYGEKVLIQFEDFANHNAFELLSKYSSSHLVFND--DIQGTASVVLAGILSALKLVGGTLADQTFLFLGA 337 (464)
Q Consensus 260 idefv~av~~~fGp~~lIq~EDf~~~~af~iL~ryr~~~~~FnD--DiQGTaaV~LAgll~Alk~~g~~l~d~riv~~GA 337 (464)
+.+++..+.. | .++ |-+-.+... ..+-+.+| .++||.|= +..-=-+=+||=++.-.+..| ++++.||+++|-
T Consensus 85 i~Dta~vls~-y-~D~-iviR~~~~~-~~~~~a~~-s~vPVINa~~g~~~HPtQ~LaDl~Ti~e~~g-~l~g~~va~vGD 158 (301)
T TIGR00670 85 LADTIKTLSG-Y-SDA-IVIRHPLEG-AARLAAEV-SEVPVINAGDGSNQHPTQTLLDLYTIYEEFG-RLDGLKIALVGD 158 (301)
T ss_pred HHHHHHHHHH-h-CCE-EEEECCchh-HHHHHHhh-CCCCEEeCCCCCCCCcHHHHHHHHHHHHHhC-CCCCCEEEEEcc
Confidence 4455554444 4 333 334444332 22233333 47999994 222222345666666555555 699999999997
Q ss_pred chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhhhc-CC---CCCHHHHHhcCCCcEE
Q 012398 338 GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHEH-AP---IKSLLDAVKAIKPTML 413 (464)
Q Consensus 338 GsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~~-~~---~~~L~e~v~~vkptvL 413 (464)
|.= .-+++-++.++.+ .|+ ++.++-.+|+- +++.....++.. .. ..++.+++++ +||+
T Consensus 159 ~~~-~~v~~Sl~~~~a~-~g~-------~v~~~~P~~~~-------~~~~~~~~~~~~G~~v~~~~d~~~a~~~--aDvv 220 (301)
T TIGR00670 159 LKY-GRTVHSLAEALTR-FGV-------EVYLISPEELR-------MPKEILEELKAKGIKVRETESLEEVIDE--ADVL 220 (301)
T ss_pred CCC-CcHHHHHHHHHHH-cCC-------EEEEECCcccc-------CCHHHHHHHHHcCCEEEEECCHHHHhCC--CCEE
Confidence 620 1345555555544 465 57777776651 222222233321 11 3689999998 9999
Q ss_pred EeccCCCCC---------------CCHHHHHHHHcCCCCcEEE-EcCCCCCCCCCCHHH
Q 012398 414 MGTSGVGKT---------------FTKEVVEAMASFNEKPVIF-ALSNPTSQSECTAEE 456 (464)
Q Consensus 414 IG~S~~~g~---------------ft~evv~~Ma~~~erPIIF-aLSNPt~~~E~tped 456 (464)
.-.+-+... +|+|. |+...++.||+ ||- ..-|++.+-
T Consensus 221 yt~~~~~er~~~~~~~~~~~~~y~v~~el---l~~a~~~ai~mHclP---Rg~Ev~~~V 273 (301)
T TIGR00670 221 YVTRIQKERFPDPEEYEKYKGSYGITLER---LEAAKKGVIIMHPLP---RVDEIDPSV 273 (301)
T ss_pred EECCccccccCCHHHHHHHhcCCeECHHH---HhhcCCCCEEECCCC---CCcccCHHH
Confidence 987654211 23333 44334667777 554 556777653
No 410
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=54.65 E-value=14 Score=38.47 Aligned_cols=33 Identities=18% Similarity=0.200 Sum_probs=26.0
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCc
Q 012398 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGL 375 (464)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GL 375 (464)
.|+|+|||.||+..|..|..+ |. .+.++|+-+=
T Consensus 3 siaIVGaGiAGl~aA~~L~~a-----G~-------~vtV~eKg~G 35 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREA-----GR-------EVTVFEKGRG 35 (331)
T ss_pred cEEEEccchHHHHHHHHHHhc-----Cc-------EEEEEEcCCC
Confidence 489999999999999998763 64 3677886543
No 411
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=54.65 E-value=51 Score=31.87 Aligned_cols=97 Identities=18% Similarity=0.204 Sum_probs=51.9
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhc----hhhhh-hcCCCCCHHHH
Q 012398 331 TFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFK----KPWAH-EHAPIKSLLDA 404 (464)
Q Consensus 331 riv~~GA-GsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k----~~fa~-~~~~~~~L~e~ 404 (464)
||+|.|| |..|..+++.|++ .| .+++++|+. .......+.... ..+.. +.....++.++
T Consensus 1 kvlV~GatG~iG~~l~~~l~~-----~g-------~~V~~~~~~---~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 65 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLE-----SG-------HEVVVLDNL---SNGSPEALKRGERITRVTFVEGDLRDRELLDRL 65 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHh-----CC-------CeEEEEeCC---CccchhhhhhhccccceEEEECCCCCHHHHHHH
Confidence 5788876 8888888887764 24 246667642 111001111110 01111 11222457778
Q ss_pred HhcCCCcEEEeccCCCCC----------------CCHHHHHHHHcCCCCcEEEE
Q 012398 405 VKAIKPTMLMGTSGVGKT----------------FTKEVVEAMASFNEKPVIFA 442 (464)
Q Consensus 405 v~~vkptvLIG~S~~~g~----------------ft~evv~~Ma~~~erPIIFa 442 (464)
++..++|++|=+.+.... .+..+++.|.+..-+.+||.
T Consensus 66 ~~~~~~d~vv~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~ 119 (328)
T TIGR01179 66 FEEHKIDAVIHFAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVKKFIFS 119 (328)
T ss_pred HHhCCCcEEEECccccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCCEEEEe
Confidence 876789999955543211 12456677776655678873
No 412
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=54.61 E-value=20 Score=39.23 Aligned_cols=104 Identities=18% Similarity=0.299 Sum_probs=64.8
Q ss_pred CCCCcccccchhhhHHhhhCCCCCCceeeEEe-ecCCCccccccCccccccccCCCChhhHHHHHHHHHHHHHHhcCCCe
Q 012398 197 LGCQGMGIPVGKLSLYTALGGLRPSACLPITI-DVGTNNEQLLNDEFYIGLRQKRATGQEYAELLQEFMTAVKQNYGEKV 275 (464)
Q Consensus 197 lG~~gm~I~~GKl~Ly~a~gGI~P~~~lPV~L-DvgTnne~Ll~Dp~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~~ 275 (464)
.||-| -||+++-.|.|+-==-....+.| .|+. | +|.=+-+..+= ++.
T Consensus 241 YGPPG----TGKSS~IaAmAn~L~ydIydLeLt~v~~-n--------------------------~dLr~LL~~t~-~kS 288 (457)
T KOG0743|consen 241 YGPPG----TGKSSFIAAMANYLNYDIYDLELTEVKL-D--------------------------SDLRHLLLATP-NKS 288 (457)
T ss_pred eCCCC----CCHHHHHHHHHhhcCCceEEeeeccccC-c--------------------------HHHHHHHHhCC-CCc
Confidence 56666 37999999999865222555556 5553 3 23222233333 788
Q ss_pred eeeeecCCCccHHHHHHHHcCCCceeecCccchhHHHHHHHHHHHHHhCCCCCcceEEEeCc
Q 012398 276 LIQFEDFANHNAFELLSKYSSSHLVFNDDIQGTASVVLAGILSALKLVGGTLADQTFLFLGA 337 (464)
Q Consensus 276 lIq~EDf~~~~af~iL~ryr~~~~~FnDDiQGTaaV~LAgll~Alk~~g~~l~d~riv~~GA 337 (464)
+|-+|||... |.+=++-+.+-.-+++ .-.-|||+||||++-=.--.=.+.||+||=.
T Consensus 289 IivIEDIDcs--~~l~~~~~~~~~~~~~---~~~~VTlSGLLNfiDGlwSscg~ERIivFTT 345 (457)
T KOG0743|consen 289 ILLIEDIDCS--FDLRERRKKKKENFEG---DLSRVTLSGLLNFLDGLWSSCGDERIIVFTT 345 (457)
T ss_pred EEEEeecccc--cccccccccccccccC---CcceeehHHhhhhhccccccCCCceEEEEec
Confidence 9999999643 4433343333333333 4567999999999765444555688888864
No 413
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=54.49 E-value=23 Score=36.57 Aligned_cols=59 Identities=22% Similarity=0.195 Sum_probs=35.1
Q ss_pred cCccchhHHHHHHHHHHHHHhCCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcc
Q 012398 303 DDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDS 372 (464)
Q Consensus 303 DDiQGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~ 372 (464)
|++.+.-+=-+|.-+.+.........+.+++|+|||+.|+..+.+... .|. ++|+++|.
T Consensus 143 ~~~~aal~epla~~~~~~a~~~~~~~~~~V~V~GaGpIGLla~~~a~~-----~Ga------~~Viv~d~ 201 (350)
T COG1063 143 DEEAAALTEPLATAYHGHAERAAVRPGGTVVVVGAGPIGLLAIALAKL-----LGA------SVVIVVDR 201 (350)
T ss_pred ChhhhhhcChhhhhhhhhhhccCCCCCCEEEEECCCHHHHHHHHHHHH-----cCC------ceEEEeCC
Confidence 444554444455554442333333333399999999999987443322 353 58998887
No 414
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=54.38 E-value=16 Score=41.18 Aligned_cols=34 Identities=21% Similarity=0.328 Sum_probs=27.3
Q ss_pred CcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 328 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 328 ~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
...||+|+|||.||+..|..+.. .|. ++.++|+.
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~-----~G~-------~Vtv~e~~ 225 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLR-----KGH-------DVTIFDAN 225 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEecC
Confidence 45799999999999999998865 253 57788865
No 415
>PLN02676 polyamine oxidase
Probab=54.24 E-value=32 Score=37.37 Aligned_cols=23 Identities=22% Similarity=0.458 Sum_probs=20.2
Q ss_pred CcceEEEeCcchHHHHHHHHHHH
Q 012398 328 ADQTFLFLGAGEAGTGIAELIAL 350 (464)
Q Consensus 328 ~d~riv~~GAGsAg~GiA~ll~~ 350 (464)
...+|+|+|||.+|++.|..|.+
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~ 47 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSE 47 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHH
Confidence 35579999999999999999875
No 416
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=54.03 E-value=57 Score=30.75 Aligned_cols=36 Identities=28% Similarity=0.292 Sum_probs=25.0
Q ss_pred CCCcceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 326 TLADQTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 326 ~l~d~riv~~GA-GsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
+++..+++|.|| |..|..+++.|++ .|. ++++++++
T Consensus 4 ~~~~~~vlItGasg~iG~~la~~l~~-----~G~-------~v~~~~r~ 40 (262)
T PRK13394 4 NLNGKTAVVTGAASGIGKEIALELAR-----AGA-------AVAIADLN 40 (262)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHH-----CCC-------eEEEEeCC
Confidence 356778999998 6677777776654 353 57777764
No 417
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=53.97 E-value=14 Score=40.55 Aligned_cols=32 Identities=16% Similarity=0.362 Sum_probs=25.5
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccC
Q 012398 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKG 374 (464)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~G 374 (464)
.|+|+|||.||+..|..+.. .| .++.++|+..
T Consensus 6 DVvIIGgGpAGL~AA~~lar-----~g-------~~V~liE~~~ 37 (555)
T TIGR03143 6 DLIIIGGGPAGLSAGIYAGR-----AK-------LDTLIIEKDD 37 (555)
T ss_pred cEEEECCCHHHHHHHHHHHH-----CC-------CCEEEEecCC
Confidence 69999999999999987764 24 3688888753
No 418
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=53.86 E-value=15 Score=43.83 Aligned_cols=33 Identities=21% Similarity=0.341 Sum_probs=27.2
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 329 DQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 329 d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
..+|+|+|||.||+..|..|.. .|. ++.++|+.
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr-----~G~-------~VTV~Ek~ 569 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLAR-----AGH-------PVTVFEKK 569 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEecc
Confidence 4799999999999999998865 353 58888875
No 419
>PRK13938 phosphoheptose isomerase; Provisional
Probab=53.84 E-value=1.1e+02 Score=29.64 Aligned_cols=37 Identities=16% Similarity=0.064 Sum_probs=26.9
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHH--cCCCCcEEEEcCCCC
Q 012398 409 KPTMLMGTSGVGKTFTKEVVEAMA--SFNEKPVIFALSNPT 447 (464)
Q Consensus 409 kptvLIG~S~~~g~ft~evv~~Ma--~~~erPIIFaLSNPt 447 (464)
+-|++|++|..| =|+++++.+. +...-|+|.=-+||.
T Consensus 113 ~~DllI~iS~SG--~t~~vi~a~~~Ak~~G~~vI~iT~~~~ 151 (196)
T PRK13938 113 PGDTLFAISTSG--NSMSVLRAAKTARELGVTVVAMTGESG 151 (196)
T ss_pred CCCEEEEEcCCC--CCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 479999999976 6888888764 455667776555554
No 420
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=53.57 E-value=36 Score=33.88 Aligned_cols=95 Identities=15% Similarity=0.277 Sum_probs=53.9
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccC----------cccCCCccCCchhchhhhhhcC----
Q 012398 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKG----------LIVSSRKESLQHFKKPWAHEHA---- 396 (464)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~G----------Ll~~~r~~~l~~~k~~fa~~~~---- 396 (464)
||.|+|+|..|..+|..|... | .+++++|++. .+.... ++. ..+++.+
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~-----g-------~~V~~~d~~~~~~~~a~~~g~~~~~~----~~~--~~~~~aDlVil 63 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL-----G-------HTVYGVSRRESTCERAIERGLVDEAS----TDL--SLLKDCDLVIL 63 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC-----C-------CEEEEEECCHHHHHHHHHCCCccccc----CCH--hHhcCCCEEEE
Confidence 799999999999999988653 4 2578888641 111100 000 0111100
Q ss_pred --CC----CCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEE--EcCCCC
Q 012398 397 --PI----KSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIF--ALSNPT 447 (464)
Q Consensus 397 --~~----~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIF--aLSNPt 447 (464)
+. .-+.+....++|+.+|= . .+ ..+.++++.+.+...+ +|= ||+||.
T Consensus 64 avp~~~~~~~~~~l~~~l~~~~ii~-d-~~-Svk~~~~~~~~~~~~~-~v~~HPm~G~~ 118 (279)
T PRK07417 64 ALPIGLLLPPSEQLIPALPPEAIVT-D-VG-SVKAPIVEAWEKLHPR-FVGSHPMAGTA 118 (279)
T ss_pred cCCHHHHHHHHHHHHHhCCCCcEEE-e-Cc-chHHHHHHHHHHhhCC-ceeeCCcCCCC
Confidence 00 12334444456777762 2 22 4778899999765444 453 788875
No 421
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=53.53 E-value=15 Score=37.42 Aligned_cols=34 Identities=26% Similarity=0.333 Sum_probs=26.0
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccC
Q 012398 329 DQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKG 374 (464)
Q Consensus 329 d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~G 374 (464)
...|+|+|||.+|+..|-.|.. .|+ ++.++|++-
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~-----~G~-------~v~liE~~~ 40 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALAR-----AGA-------SVALVAPEP 40 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhc-----CCC-------eEEEEeCCC
Confidence 3579999999999999977754 364 577777753
No 422
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=53.48 E-value=13 Score=37.81 Aligned_cols=20 Identities=20% Similarity=0.360 Sum_probs=17.9
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 012398 331 TFLFLGAGEAGTGIAELIAL 350 (464)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~ 350 (464)
.|+|+|||.||+..|-.|..
T Consensus 3 dv~IvGaG~aGl~~A~~L~~ 22 (403)
T PRK07333 3 DVVIAGGGYVGLALAVALKQ 22 (403)
T ss_pred CEEEECccHHHHHHHHHHhc
Confidence 58999999999999988865
No 423
>PRK06138 short chain dehydrogenase; Provisional
Probab=53.42 E-value=30 Score=32.48 Aligned_cols=36 Identities=28% Similarity=0.384 Sum_probs=24.5
Q ss_pred CCCcceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 326 TLADQTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 326 ~l~d~riv~~GA-GsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
.|++.+++|.|| |..|..+|+.+++ .|. ++++++++
T Consensus 2 ~~~~k~~lItG~sg~iG~~la~~l~~-----~G~-------~v~~~~r~ 38 (252)
T PRK06138 2 RLAGRVAIVTGAGSGIGRATAKLFAR-----EGA-------RVVVADRD 38 (252)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHH-----CCC-------eEEEecCC
Confidence 467789999998 5566666666653 352 57877764
No 424
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=53.41 E-value=15 Score=38.64 Aligned_cols=32 Identities=22% Similarity=0.361 Sum_probs=26.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
-.|||+|+|+||+..|..+.+. | .++.++|++
T Consensus 4 yDvvVIGgGpaGl~aA~~la~~-----g-------~~V~lie~~ 35 (441)
T PRK08010 4 YQAVIIGFGKAGKTLAVTLAKA-----G-------WRVALIEQS 35 (441)
T ss_pred CCEEEECCCHhHHHHHHHHHHC-----C-------CeEEEEcCC
Confidence 4689999999999999988652 4 468899975
No 425
>PRK06392 homoserine dehydrogenase; Provisional
Probab=53.36 E-value=60 Score=33.83 Aligned_cols=81 Identities=16% Similarity=0.245 Sum_probs=48.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHH-HhcCCChhhhcCeEEEEcccCcccCCCccCCchhc-hhhhhh----cCCCC--CHH
Q 012398 331 TFLFLGAGEAGTGIAELIALEMS-KQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFK-KPWAHE----HAPIK--SLL 402 (464)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~a~~-~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k-~~fa~~----~~~~~--~L~ 402 (464)
||.++|.|..|-+++++|.+.-. ++.|+. .+=+-+.|++|.+...+. ++..+ ..+... ..... ++.
T Consensus 2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~----l~VVaVsds~g~l~~~~G--ldl~~l~~~~~~g~l~~~~~~~~~~~ 75 (326)
T PRK06392 2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNG----ISVVSVSDSKLSYYNERG--LDIGKIISYKEKGRLEEIDYEKIKFD 75 (326)
T ss_pred EEEEECCCHHHHHHHHHHHhCHHhHhcCCC----eEEEEEEECCCcccCCcC--CChHHHHHHHhcCccccCCCCcCCHH
Confidence 79999999999999999876210 112321 223556799998887652 33211 111111 01112 567
Q ss_pred HHHhcCCCcEEEeccC
Q 012398 403 DAVKAIKPTMLMGTSG 418 (464)
Q Consensus 403 e~v~~vkptvLIG~S~ 418 (464)
+.++ .++||+|=+++
T Consensus 76 ~ll~-~~~DVvVE~t~ 90 (326)
T PRK06392 76 EIFE-IKPDVIVDVTP 90 (326)
T ss_pred HHhc-CCCCEEEECCC
Confidence 7665 58999998874
No 426
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=53.30 E-value=19 Score=40.26 Aligned_cols=35 Identities=20% Similarity=0.248 Sum_probs=28.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcc
Q 012398 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLI 376 (464)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl 376 (464)
..|+|+|||.+|+.+|-.|.+ .|. ++.++|++..+
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~-----~G~-------~V~VlE~~~~~ 295 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALAR-----RGW-------QVTLYEADEAP 295 (662)
T ss_pred CCEEEECccHHHHHHHHHHHH-----CCC-------eEEEEecCCCc
Confidence 579999999999999998865 353 68999987433
No 427
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=53.26 E-value=54 Score=35.65 Aligned_cols=136 Identities=14% Similarity=0.176 Sum_probs=66.7
Q ss_pred HHHHHHHHhcCCC-eeeeeecCCCccHHHHHHHHcCCCceeecCccchhHHH----HHHHHHHHHHhCCCCCcceEEEeC
Q 012398 262 EFMTAVKQNYGEK-VLIQFEDFANHNAFELLSKYSSSHLVFNDDIQGTASVV----LAGILSALKLVGGTLADQTFLFLG 336 (464)
Q Consensus 262 efv~av~~~fGp~-~lIq~EDf~~~~af~iL~ryr~~~~~FnDDiQGTaaV~----LAgll~Alk~~g~~l~d~riv~~G 336 (464)
...+.++++||-- ..+.+ ++-.+.-+.|++... .|.+++.-.+--. -+-+...+......|+..|++++|
T Consensus 268 ~~A~~Le~~fGiP~~~~~~--~Gi~~T~~~Lr~ia~---~~g~~i~~~~e~~I~~e~~~~~~~ld~~~~~L~GKrv~i~~ 342 (466)
T TIGR01282 268 YISRHMEEKYGIPWMEYNF--FGPTKIAESLRKIAE---FFDDEIKEKAEEVIAKYQPAVDAVIAKYRPRLEGKTVMLYV 342 (466)
T ss_pred HHHHHHHHHhCCceEeCCC--CCHHHHHHHHHHHHH---HHCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 4455666777632 22222 555555555555432 2333332221111 112333444456789999999999
Q ss_pred cchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhh-----hcCCCCCHHHHHhcCCCc
Q 012398 337 AGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAH-----EHAPIKSLLDAVKAIKPT 411 (464)
Q Consensus 337 AGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~-----~~~~~~~L~e~v~~vkpt 411 (464)
.|.=...++.++. +.|+.. ..+-. .....++.....+.... +..+...+++.++..|||
T Consensus 343 g~~~~~~~~~~l~-----ELGmev-------v~~g~----~~~~~~~~~~~~~~~~~~~~i~~~~d~~el~~~i~~~~pD 406 (466)
T TIGR01282 343 GGLRPRHVIGAFE-----DLGMEV-------IGTGY----EFAHNDDYERTTKYMKDGTLIYDDVTHYEFEEFVEKLKPD 406 (466)
T ss_pred CCCcHHHHHHHHH-----HCCCEE-------EEEee----ecCCHHHHHHHHHhcCCCeEEeeCCCHHHHHHHHHHhCCC
Confidence 8766666666432 368742 11100 00001111111111110 011123688889999999
Q ss_pred EEEeccC
Q 012398 412 MLMGTSG 418 (464)
Q Consensus 412 vLIG~S~ 418 (464)
++||-|-
T Consensus 407 l~ig~~~ 413 (466)
T TIGR01282 407 LVGSGIK 413 (466)
T ss_pred EEEecCC
Confidence 9999774
No 428
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=53.26 E-value=11 Score=38.65 Aligned_cols=21 Identities=19% Similarity=0.330 Sum_probs=18.9
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 012398 330 QTFLFLGAGEAGTGIAELIAL 350 (464)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~ 350 (464)
.+|||+|+|.||+..|+.|..
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~ 23 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRK 23 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHh
Confidence 489999999999999998865
No 429
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=53.22 E-value=18 Score=36.53 Aligned_cols=35 Identities=14% Similarity=0.177 Sum_probs=27.8
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCc
Q 012398 329 DQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGL 375 (464)
Q Consensus 329 d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GL 375 (464)
...|+|+|||.+|+.+|-.|.+ .| .++.++|+...
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~-----~g-------~~V~lie~~~~ 37 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLAR-----RG-------LRVLGLDRFMP 37 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHH-----CC-------CeEEEEecccC
Confidence 3469999999999999988865 25 36899998644
No 430
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=53.21 E-value=17 Score=37.34 Aligned_cols=31 Identities=23% Similarity=0.373 Sum_probs=25.5
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
+|+|+|||-+|+.+|-.|.. .| .++.++|+.
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~-----~g-------~~V~vle~~ 32 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQ-----AG-------HEVTVIDRQ 32 (416)
T ss_pred EEEEECCcHHHHHHHHHHHH-----CC-------CEEEEEeCC
Confidence 69999999999999988864 24 368888885
No 431
>PF04320 DUF469: Protein with unknown function (DUF469); InterPro: IPR007416 This entry represents a family of uncharacterised proteins which are predicted to function as phosphotransferases.
Probab=53.20 E-value=12 Score=33.09 Aligned_cols=33 Identities=15% Similarity=0.432 Sum_probs=26.3
Q ss_pred CChhhHHHHHHHHHHHHHH---hcCCCeeeeeecCC
Q 012398 251 ATGQEYAELLQEFMTAVKQ---NYGEKVLIQFEDFA 283 (464)
Q Consensus 251 ~~g~~y~~~idefv~av~~---~fGp~~lIq~EDf~ 283 (464)
++.++||.|+|+|+..|.+ .||+...-+||-|-
T Consensus 27 ~~~e~~D~~~D~fId~Ie~~gL~~~Ggg~~~~eG~v 62 (101)
T PF04320_consen 27 TSEEQIDAFVDAFIDVIEPNGLAFGGGGYEQWEGFV 62 (101)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEecCCccCEeEEE
Confidence 4678999999999998887 67776666777663
No 432
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=53.02 E-value=34 Score=34.45 Aligned_cols=106 Identities=13% Similarity=0.178 Sum_probs=57.0
Q ss_pred CCcceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhh-hcCCCCCHHHH
Q 012398 327 LADQTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAH-EHAPIKSLLDA 404 (464)
Q Consensus 327 l~d~riv~~GA-GsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~-~~~~~~~L~e~ 404 (464)
+++.+|+|.|| |..|..+++.|++. |- ..+++++|++..-.......+...+..+.. +-.+..++.++
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~-----g~-----~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~ 71 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLEN-----YN-----PKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRA 71 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHh-----CC-----CcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHH
Confidence 45678999997 78888888887652 30 136888876421100000001000111111 11122357777
Q ss_pred HhcCCCcEEEeccCCCC----CC------------CHHHHHHHHcCCCCcEEEEcC
Q 012398 405 VKAIKPTMLMGTSGVGK----TF------------TKEVVEAMASFNEKPVIFALS 444 (464)
Q Consensus 405 v~~vkptvLIG~S~~~g----~f------------t~evv~~Ma~~~erPIIFaLS 444 (464)
++. +|++|=+.+... .+ +..+++.+.+..-+.|||.=|
T Consensus 72 ~~~--iD~Vih~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~~iV~~SS 125 (324)
T TIGR03589 72 LRG--VDYVVHAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVKRVVALST 125 (324)
T ss_pred Hhc--CCEEEECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 775 899997765431 11 235667777655567888543
No 433
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=52.98 E-value=1.5e+02 Score=31.12 Aligned_cols=109 Identities=24% Similarity=0.326 Sum_probs=66.6
Q ss_pred HHHHHcCCCceee---cCccchhHHHHHHHHHHHHHhCCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCe
Q 012398 290 LLSKYSSSHLVFN---DDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKK 366 (464)
Q Consensus 290 iL~ryr~~~~~Fn---DDiQGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~ 366 (464)
-+.+| .++||.| |+.|=| =+||=++.-.+.. ..|++.||+++|.+.- ++++-++.++.+ .|+ +
T Consensus 117 ~~a~~-~~vPVINa~~~~~HPt--QaLaDl~Ti~e~~-g~l~g~~va~vGd~~~--~v~~Sl~~~~~~-~g~-------~ 182 (331)
T PRK02102 117 ELAKY-SGVPVWNGLTDEWHPT--QMLADFMTMKEHF-GPLKGLKLAYVGDGRN--NMANSLMVGGAK-LGM-------D 182 (331)
T ss_pred HHHHh-CCCCEEECCCCCCChH--HHHHHHHHHHHHh-CCCCCCEEEEECCCcc--cHHHHHHHHHHH-cCC-------E
Confidence 33344 4789988 333433 3455555544444 4699999999999853 478877776655 464 5
Q ss_pred EEEEcccCcccCCCccCCchhchhhhhh-cCC---CCCHHHHHhcCCCcEEEecc
Q 012398 367 IWLVDSKGLIVSSRKESLQHFKKPWAHE-HAP---IKSLLDAVKAIKPTMLMGTS 417 (464)
Q Consensus 367 i~lvD~~GLl~~~r~~~l~~~k~~fa~~-~~~---~~~L~e~v~~vkptvLIG~S 417 (464)
+.++-.+|+.-.. + .-+.-+.+++. ... ..++++|+++ +||+.-.+
T Consensus 183 v~~~~P~~~~~~~--~-~~~~~~~~~~~~g~~~~~~~d~~ea~~~--aDvvyt~~ 232 (331)
T PRK02102 183 VRICAPKELWPEE--E-LVALAREIAKETGAKITITEDPEEAVKG--ADVIYTDV 232 (331)
T ss_pred EEEECCcccccCH--H-HHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCEEEEcC
Confidence 8888777663321 1 11111233332 111 2689999998 99998754
No 434
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=52.93 E-value=16 Score=38.43 Aligned_cols=32 Identities=31% Similarity=0.346 Sum_probs=25.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
-.+||+|||.||+..|..+.+. | .++.++|+.
T Consensus 4 yDvvIIG~G~aGl~aA~~l~~~-----g-------~~v~lie~~ 35 (460)
T PRK06292 4 YDVIVIGAGPAGYVAARRAAKL-----G-------KKVALIEKG 35 (460)
T ss_pred ccEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeCC
Confidence 4699999999999999887652 4 468888873
No 435
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=52.92 E-value=22 Score=36.69 Aligned_cols=38 Identities=18% Similarity=0.278 Sum_probs=29.3
Q ss_pred CcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCc
Q 012398 328 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGL 375 (464)
Q Consensus 328 ~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GL 375 (464)
++..|+|+|||.+|+.+|-.|.+. .|. +++.++|++.+
T Consensus 29 ~~~dvvIIGgGi~G~s~A~~L~~~----~g~------~~V~vle~~~~ 66 (407)
T TIGR01373 29 PTYDVIIVGGGGHGLATAYYLAKE----HGI------TNVAVLEKGWL 66 (407)
T ss_pred ccCCEEEECCcHHHHHHHHHHHHh----cCC------CeEEEEEcccc
Confidence 355799999999999999988752 242 47899998643
No 436
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=52.79 E-value=17 Score=39.88 Aligned_cols=34 Identities=29% Similarity=0.525 Sum_probs=27.5
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccC
Q 012398 329 DQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKG 374 (464)
Q Consensus 329 d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~G 374 (464)
+-.|+|+|+|..|++||..|.. .|+ ++.++|+..
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~-----rG~-------~V~LlEk~d 39 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCAL-----RGL-------RCILVERHD 39 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHH-----cCC-------eEEEEECCC
Confidence 3569999999999999998875 364 588899853
No 437
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=52.68 E-value=22 Score=38.32 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=21.9
Q ss_pred CCCcceEEEeCcchHHHHHHHHHHH
Q 012398 326 TLADQTFLFLGAGEAGTGIAELIAL 350 (464)
Q Consensus 326 ~l~d~riv~~GAGsAg~GiA~ll~~ 350 (464)
.+...||+|+|+|-+|.++|+.+..
T Consensus 12 ~~~~~~v~v~G~G~sG~a~a~~L~~ 36 (473)
T PRK00141 12 QELSGRVLVAGAGVSGRGIAAMLSE 36 (473)
T ss_pred cccCCeEEEEccCHHHHHHHHHHHH
Confidence 3566799999999999999999875
No 438
>PRK10015 oxidoreductase; Provisional
Probab=52.68 E-value=18 Score=38.29 Aligned_cols=33 Identities=21% Similarity=0.321 Sum_probs=25.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccC
Q 012398 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKG 374 (464)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~G 374 (464)
-.|+|+|||.||+..|-.+.+ .|+ ++.++|+.-
T Consensus 6 ~DViIVGgGpAG~~aA~~LA~-----~G~-------~VlliEr~~ 38 (429)
T PRK10015 6 FDAIVVGAGVAGSVAALVMAR-----AGL-------DVLVIERGD 38 (429)
T ss_pred cCEEEECcCHHHHHHHHHHHh-----CCC-------eEEEEecCC
Confidence 479999999999999988754 364 467777653
No 439
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=52.53 E-value=18 Score=39.11 Aligned_cols=34 Identities=29% Similarity=0.434 Sum_probs=27.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCc
Q 012398 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGL 375 (464)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GL 375 (464)
-.|||+|+|.+|+++|..+.. .|+ ++.+++++-+
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~-----rG~-------~V~LlEk~d~ 40 (502)
T PRK13369 7 YDLFVIGGGINGAGIARDAAG-----RGL-------KVLLCEKDDL 40 (502)
T ss_pred cCEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEECCCC
Confidence 469999999999999999865 365 5889997743
No 440
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=52.48 E-value=19 Score=37.16 Aligned_cols=35 Identities=17% Similarity=0.340 Sum_probs=27.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccC
Q 012398 330 QTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKG 374 (464)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~G 374 (464)
..|+|+|||.+|+.+|-.|.... .| .++.++|+..
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~---~g-------~~V~llE~~~ 37 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERY---PG-------ARIAVLEKES 37 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhC---CC-------CeEEEEeCCC
Confidence 46999999999999998887530 13 3788999863
No 441
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=52.34 E-value=17 Score=37.64 Aligned_cols=33 Identities=15% Similarity=0.368 Sum_probs=25.2
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 329 DQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 329 d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
...|+|+|||.||+..|-.|.. .|+ ++.++|+.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~-----~G~-------~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKE-----SDL-------RIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHh-----CCC-------EEEEEcCC
Confidence 3479999999999999977654 365 46677764
No 442
>PLN02852 ferredoxin-NADP+ reductase
Probab=51.86 E-value=10 Score=41.55 Aligned_cols=41 Identities=15% Similarity=0.170 Sum_probs=31.0
Q ss_pred hCCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 323 VGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 323 ~g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
...+-...||+|+|||.||+..|..|.... .| -+|.++|+.
T Consensus 20 ~~~~~~~~~VaIVGaGPAGl~AA~~L~~~~---~g-------~~Vtv~E~~ 60 (491)
T PLN02852 20 SSSTSEPLHVCVVGSGPAGFYTADKLLKAH---DG-------ARVDIIERL 60 (491)
T ss_pred CCCCCCCCcEEEECccHHHHHHHHHHHhhC---CC-------CeEEEEecC
Confidence 344455679999999999999999887531 24 368888886
No 443
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=51.82 E-value=1.3e+02 Score=29.04 Aligned_cols=45 Identities=27% Similarity=0.287 Sum_probs=32.0
Q ss_pred CHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCC
Q 012398 400 SLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQSE 451 (464)
Q Consensus 400 ~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaLSNPt~~~E 451 (464)
++.+.++. +|++|..|... .|.--++++|+ +..|+|. |+....+|
T Consensus 255 ~~~~~~~~--ad~~v~~s~~e-~~~~~~~Ea~a--~G~PvI~--~~~~~~~e 299 (360)
T cd04951 255 DIAAYYNA--ADLFVLSSAWE-GFGLVVAEAMA--CELPVVA--TDAGGVRE 299 (360)
T ss_pred cHHHHHHh--hceEEeccccc-CCChHHHHHHH--cCCCEEE--ecCCChhh
Confidence 46667776 89999888754 47778999999 4789985 44433344
No 444
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=51.64 E-value=11 Score=41.54 Aligned_cols=22 Identities=32% Similarity=0.241 Sum_probs=20.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHH
Q 012398 330 QTFLFLGAGEAGTGIAELIALE 351 (464)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~a 351 (464)
+||+|+|||-||++.|..|.++
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~ 22 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADA 22 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhC
Confidence 5899999999999999999875
No 445
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=51.60 E-value=18 Score=38.26 Aligned_cols=33 Identities=30% Similarity=0.519 Sum_probs=23.4
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcc
Q 012398 332 FLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLI 376 (464)
Q Consensus 332 iv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl 376 (464)
|||+|+|.||+..|-.... .|+ ++.|+++.+.+
T Consensus 2 VVVvGgG~aG~~AAi~AAr-----~G~-------~VlLiE~~~~l 34 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIAAAR-----AGA-------KVLLIEKGGFL 34 (428)
T ss_dssp EEEE--SHHHHHHHHHHHH-----TTS--------EEEE-SSSSS
T ss_pred EEEECccHHHHHHHHHHHH-----CCC-------EEEEEECCccC
Confidence 7999999999999886654 364 68999998865
No 446
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=51.57 E-value=73 Score=30.12 Aligned_cols=38 Identities=26% Similarity=0.262 Sum_probs=25.4
Q ss_pred CCCCCcceEEEeCcc-hHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 324 GGTLADQTFLFLGAG-EAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 324 g~~l~d~riv~~GAG-sAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
..++++.+++|.||+ .-|..+|+.+. + .|. ++++++++
T Consensus 6 ~~~~~~k~ilItGas~~IG~~la~~l~----~-~G~-------~v~~~~r~ 44 (256)
T PRK06124 6 RFSLAGQVALVTGSARGLGFEIARALA----G-AGA-------HVLVNGRN 44 (256)
T ss_pred ccCCCCCEEEEECCCchHHHHHHHHHH----H-cCC-------eEEEEeCC
Confidence 456889999999973 34444555543 3 353 68888885
No 447
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=51.48 E-value=18 Score=38.45 Aligned_cols=31 Identities=29% Similarity=0.388 Sum_probs=26.0
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
|++|+|+|+||+..|..+.+ .| .++.++|+.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~-----~g-------~~V~lie~~ 32 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQ-----NG-------KNVTLIDEA 32 (458)
T ss_pred eEEEECCCHHHHHHHHHHHh-----CC-------CcEEEEECC
Confidence 89999999999999998865 35 368899975
No 448
>PRK09186 flagellin modification protein A; Provisional
Probab=51.24 E-value=20 Score=33.85 Aligned_cols=35 Identities=26% Similarity=0.358 Sum_probs=22.8
Q ss_pred CCcceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 327 LADQTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 327 l~d~riv~~GA-GsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
+++.+++|.|| |..|..+|+.+.+ .|. ++++++++
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~-----~g~-------~v~~~~r~ 37 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILE-----AGG-------IVIAADID 37 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHH-----CCC-------EEEEEecC
Confidence 45788999998 4555666666653 353 56777653
No 449
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=51.20 E-value=18 Score=38.62 Aligned_cols=31 Identities=19% Similarity=0.341 Sum_probs=20.9
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
+|+|+|||+||+-.|-.+.+ .| .++.+++++
T Consensus 2 dviIIGgGaAGl~aA~~aa~-----~g-------~~V~vlE~~ 32 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAE-----KG-------ARVLVLERN 32 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHH-----TT---------EEEE-SS
T ss_pred cEEEECCCHHHHHHHHHHHh-----CC-------CCEEEEeCC
Confidence 58999999999999988744 34 368888876
No 450
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=51.13 E-value=14 Score=40.23 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=20.4
Q ss_pred cceEEEeCcchHHHHHHHHHHHH
Q 012398 329 DQTFLFLGAGEAGTGIAELIALE 351 (464)
Q Consensus 329 d~riv~~GAGsAg~GiA~ll~~a 351 (464)
-.+++|+|||+||+..|+-|.+.
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~ 28 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLRE 28 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHC
Confidence 57899999999999999988763
No 451
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=51.06 E-value=13 Score=36.42 Aligned_cols=35 Identities=17% Similarity=0.410 Sum_probs=24.4
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCccc
Q 012398 332 FLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIV 377 (464)
Q Consensus 332 iv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~ 377 (464)
+||+|+|+||.-+|..|.+. | ..++.++..-+...
T Consensus 3 ~iIVGsG~~G~v~A~rLs~~-----~------~~~VlvlEaG~~~~ 37 (296)
T PF00732_consen 3 YIIVGSGAGGSVVASRLSEA-----G------NKKVLVLEAGPRYP 37 (296)
T ss_dssp EEEES-SHHHHHHHHHHTTS-----T------TS-EEEEESSBSCT
T ss_pred EEEECcCHHHHHHHHHHhhC-----C------CCcEEEEEccccCc
Confidence 78999999999999988531 2 34788887765443
No 452
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=51.02 E-value=20 Score=38.75 Aligned_cols=34 Identities=15% Similarity=0.316 Sum_probs=27.2
Q ss_pred CcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 328 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 328 ~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
...+|+|+|+|.||+..|..|.. .|. +++++|+.
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~-----~g~-------~V~v~e~~ 175 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNR-----AGH-------TVTVFERE 175 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHH-----cCC-------eEEEEecC
Confidence 35799999999999999988864 253 58888865
No 453
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=50.95 E-value=18 Score=39.34 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=19.1
Q ss_pred cceEEEeCcchHHHHHHHHHHH
Q 012398 329 DQTFLFLGAGEAGTGIAELIAL 350 (464)
Q Consensus 329 d~riv~~GAGsAg~GiA~ll~~ 350 (464)
..+|+|+|||.+|+..|-.|..
T Consensus 23 ~~dVlIVGaGpaGl~lA~~L~~ 44 (547)
T PRK08132 23 RHPVVVVGAGPVGLALAIDLAQ 44 (547)
T ss_pred cCCEEEECCCHHHHHHHHHHHh
Confidence 4579999999999999988764
No 454
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=50.88 E-value=1e+02 Score=28.31 Aligned_cols=34 Identities=24% Similarity=0.307 Sum_probs=24.4
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHc--CCCCcEEEEcCC
Q 012398 409 KPTMLMGTSGVGKTFTKEVVEAMAS--FNEKPVIFALSN 445 (464)
Q Consensus 409 kptvLIG~S~~~g~ft~evv~~Ma~--~~erPIIFaLSN 445 (464)
+-|++|++|..| -|+++++.+.. ...-|+|. ++|
T Consensus 101 ~~Dv~I~iS~SG--~t~~~i~~~~~ak~~Ga~vI~-IT~ 136 (177)
T cd05006 101 PGDVLIGISTSG--NSPNVLKALEAAKERGMKTIA-LTG 136 (177)
T ss_pred CCCEEEEEeCCC--CCHHHHHHHHHHHHCCCEEEE-EeC
Confidence 479999999876 68899888763 33456665 544
No 455
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=50.87 E-value=19 Score=38.42 Aligned_cols=104 Identities=11% Similarity=0.124 Sum_probs=57.9
Q ss_pred HHHHHHhCCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhhh--
Q 012398 317 LSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE-- 394 (464)
Q Consensus 317 l~Alk~~g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~-- 394 (464)
+.++.-....|+..|++|+|-..-.+++++.|.+ .|+... . +++........+.-+.+...
T Consensus 291 ~~~~~~~~~~l~gkrv~i~g~~~~~~~la~~L~e-----lGm~v~------~------~~~~~~~~~~~~~~~~~l~~~~ 353 (435)
T cd01974 291 VDAMTDSHQYLHGKKFALYGDPDFLIGLTSFLLE-----LGMEPV------H------VLTGNGGKRFEKEMQALLDASP 353 (435)
T ss_pred HHHHHHHHHhcCCCEEEEEcChHHHHHHHHHHHH-----CCCEEE------E------EEeCCCCHHHHHHHHHHHhhcC
Confidence 3344444457788999999988899999998874 477421 1 11111111111111111111
Q ss_pred ---------cCCCCCHHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCC
Q 012398 395 ---------HAPIKSLLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIFALSNPT 447 (464)
Q Consensus 395 ---------~~~~~~L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIFaLSNPt 447 (464)
..+...+++.++..+||++||-|.. +.+|+...-|.| ..+.|.
T Consensus 354 ~~~~~~v~~~~d~~e~~~~i~~~~pDliiG~s~~---------~~~a~~~gip~v-~~~~P~ 405 (435)
T cd01974 354 YGAGAKVYPGKDLWHLRSLLFTEPVDLLIGNTYG---------KYIARDTDIPLV-RFGFPI 405 (435)
T ss_pred CCCCcEEEECCCHHHHHHHHhhcCCCEEEECccH---------HHHHHHhCCCEE-EeeCCc
Confidence 1122357888888999999997741 233333356764 455554
No 456
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=50.80 E-value=54 Score=34.00 Aligned_cols=37 Identities=24% Similarity=0.132 Sum_probs=25.1
Q ss_pred CHHHHHhcCCCcE-EEeccCCCCCCCHHHHHHHHcCCCCcEEE
Q 012398 400 SLLDAVKAIKPTM-LMGTSGVGKTFTKEVVEAMASFNEKPVIF 441 (464)
Q Consensus 400 ~L~e~v~~vkptv-LIG~S~~~g~ft~evv~~Ma~~~erPIIF 441 (464)
.|.+.... +|+ ++|-|-..+ |-.-++++|| +..|||+
T Consensus 312 el~~~y~~--aDi~~v~~S~~e~-~g~~~lEAma--~G~PVI~ 349 (425)
T PRK05749 312 ELGLLYAI--ADIAFVGGSLVKR-GGHNPLEPAA--FGVPVIS 349 (425)
T ss_pred HHHHHHHh--CCEEEECCCcCCC-CCCCHHHHHH--hCCCEEE
Confidence 46666666 887 676664332 4445899998 6889997
No 457
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=50.67 E-value=18 Score=38.20 Aligned_cols=30 Identities=20% Similarity=0.258 Sum_probs=24.7
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 332 FLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 332 iv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
|||+|||+||+..|..+.+ .| .++.++|+.
T Consensus 3 vvVIGaGpaG~~aA~~aa~-----~g-------~~v~lie~~ 32 (463)
T TIGR02053 3 LVIIGSGAAAFAAAIKAAE-----LG-------ASVAMVERG 32 (463)
T ss_pred EEEECCCHHHHHHHHHHHH-----CC-------CeEEEEeCC
Confidence 7999999999999988865 35 368888875
No 458
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=50.61 E-value=19 Score=37.88 Aligned_cols=30 Identities=27% Similarity=0.279 Sum_probs=25.0
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcc
Q 012398 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDS 372 (464)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~ 372 (464)
.|||+|||.||+..|..+.. .| .++.++|+
T Consensus 3 DvvVIG~G~aGl~aA~~la~-----~G-------~~v~lie~ 32 (461)
T TIGR01350 3 DVVVIGGGPGGYVAAIRAAQ-----LG-------LKVALVEK 32 (461)
T ss_pred cEEEECCCHHHHHHHHHHHh-----CC-------CeEEEEec
Confidence 58999999999999988865 25 36889997
No 459
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=50.38 E-value=20 Score=36.00 Aligned_cols=45 Identities=18% Similarity=0.259 Sum_probs=31.2
Q ss_pred CcceEEEeCcchHHHHHHHHHHHHHH--HhcCCChhhhcCeEEEEcccCc
Q 012398 328 ADQTFLFLGAGEAGTGIAELIALEMS--KQTKAPIEEARKKIWLVDSKGL 375 (464)
Q Consensus 328 ~d~riv~~GAGsAg~GiA~ll~~a~~--~~~G~s~~eA~~~i~lvD~~GL 375 (464)
+..||+++|+|.-|.-+++.|+.+.+ +.-|.+ .. -+|.++|.+-+
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~--~g-~~i~lvD~D~V 56 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHP--GG-LAVTVYDDDTV 56 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCC--CC-CEEEEECCCEE
Confidence 56799999999999999999987521 001211 01 28999998743
No 460
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=50.36 E-value=20 Score=37.15 Aligned_cols=21 Identities=24% Similarity=0.457 Sum_probs=18.3
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 012398 330 QTFLFLGAGEAGTGIAELIAL 350 (464)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~ 350 (464)
.+|+|+|||.||+..|-.|.+
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~ 23 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHK 23 (390)
T ss_pred ceEEEECccHHHHHHHHHHHH
Confidence 579999999999999977754
No 461
>PTZ00188 adrenodoxin reductase; Provisional
Probab=50.34 E-value=28 Score=38.63 Aligned_cols=35 Identities=11% Similarity=0.129 Sum_probs=26.8
Q ss_pred CcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 328 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 328 ~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
...||+|+|||.||+..|..++.. .|. ++-++|+.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~----~g~-------~VtlfEk~ 72 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKH----ERV-------KVDIFEKL 72 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHh----cCC-------eEEEEecC
Confidence 357999999999999999977642 243 47777775
No 462
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=50.25 E-value=82 Score=32.93 Aligned_cols=105 Identities=25% Similarity=0.281 Sum_probs=66.4
Q ss_pred CCCceee---cCccchhHHHHHHHHHHHHHhCCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcc
Q 012398 296 SSHLVFN---DDIQGTASVVLAGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDS 372 (464)
Q Consensus 296 ~~~~~Fn---DDiQGTaaV~LAgll~Alk~~g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~ 372 (464)
.++||+| |..|=| =+|+=++.-.+....++++.||+++|-+.. .+++-++.++.+ .|+ ++.++=.
T Consensus 121 s~vPVINa~~~~~HPt--QaL~Dl~Ti~e~~~g~l~g~kia~vGD~~~--~v~~Sl~~~~~~-~g~-------~v~~~~P 188 (332)
T PRK04284 121 SGVPVWNGLTDEDHPT--QVLADFLTAKEHLKKPYKDIKFTYVGDGRN--NVANALMQGAAI-MGM-------DFHLVCP 188 (332)
T ss_pred CCCCEEECCCCCCChH--HHHHHHHHHHHHhcCCcCCcEEEEecCCCc--chHHHHHHHHHH-cCC-------EEEEECC
Confidence 4799999 333433 356666665554234699999999998832 477777776655 465 5888877
Q ss_pred cCcccCCCccCCchhchhhhhhcC----CCCCHHHHHhcCCCcEEEecc
Q 012398 373 KGLIVSSRKESLQHFKKPWAHEHA----PIKSLLDAVKAIKPTMLMGTS 417 (464)
Q Consensus 373 ~GLl~~~r~~~l~~~k~~fa~~~~----~~~~L~e~v~~vkptvLIG~S 417 (464)
+|+.-.+ +-+... +.+++... ...++.||+++ +||+.-.+
T Consensus 189 ~~~~~~~--~~~~~~-~~~~~~~g~~~~~~~d~~ea~~~--aDvvy~~~ 232 (332)
T PRK04284 189 KELNPDD--ELLNKC-KEIAAETGGKITITDDIDEGVKG--SDVIYTDV 232 (332)
T ss_pred ccccCCH--HHHHHH-HHHHHHcCCeEEEEcCHHHHhCC--CCEEEECC
Confidence 7764321 112111 23443211 13689999998 99998763
No 463
>PRK05868 hypothetical protein; Validated
Probab=50.17 E-value=20 Score=37.03 Aligned_cols=21 Identities=33% Similarity=0.362 Sum_probs=17.7
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 012398 330 QTFLFLGAGEAGTGIAELIAL 350 (464)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~ 350 (464)
.+|+|+|||.||+..|-.|..
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~ 22 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGR 22 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHh
Confidence 379999999999999987754
No 464
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=50.07 E-value=21 Score=42.48 Aligned_cols=34 Identities=15% Similarity=0.123 Sum_probs=27.9
Q ss_pred CcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 328 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 328 ~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
+..||+|+|||.||+..|..|... |. ++.++|+.
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~-----G~-------~VtV~E~~ 462 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKY-----GV-------DVTVYEAL 462 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-----CC-------cEEEEecC
Confidence 467999999999999999988753 53 57788875
No 465
>PRK08818 prephenate dehydrogenase; Provisional
Probab=50.06 E-value=62 Score=34.41 Aligned_cols=99 Identities=16% Similarity=0.191 Sum_probs=55.0
Q ss_pred CCcceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhhh------cCCCC
Q 012398 327 LADQTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE------HAPIK 399 (464)
Q Consensus 327 l~d~riv~~GA-GsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~------~~~~~ 399 (464)
+...||.|+|- |-.|--+|+.|... .| .+|+.+|+. +. ..... .....+ .-+..
T Consensus 2 ~~~~~I~IIGl~GliGgslA~alk~~----~~-------~~V~g~D~~-----d~-~~~~~--~~~v~~aDlVilavPv~ 62 (370)
T PRK08818 2 IAQPVVGIVGSAGAYGRWLARFLRTR----MQ-------LEVIGHDPA-----DP-GSLDP--ATLLQRADVLIFSAPIR 62 (370)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhc----CC-------CEEEEEcCC-----cc-ccCCH--HHHhcCCCEEEEeCCHH
Confidence 45689999999 99999999888642 12 368888873 11 11111 111111 11222
Q ss_pred CHHHHHhc-------CCCcEEEe-ccCCCCCCCHHHHHHHHcCCCCcEEEEcCCCCCCCC
Q 012398 400 SLLDAVKA-------IKPTMLMG-TSGVGKTFTKEVVEAMASFNEKPVIFALSNPTSQSE 451 (464)
Q Consensus 400 ~L~e~v~~-------vkptvLIG-~S~~~g~ft~evv~~Ma~~~erPIIFaLSNPt~~~E 451 (464)
...++++. +||+++|= ++ ..+.++++.|.+.. .+ |-=+.|-.-+|
T Consensus 63 ~~~~~l~~l~~~~~~l~~~~iVtDVg----SvK~~i~~~~~~~~-~~--fVG~HPMaG~E 115 (370)
T PRK08818 63 HTAALIEEYVALAGGRAAGQLWLDVT----SIKQAPVAAMLASQ-AE--VVGLHPMTAPP 115 (370)
T ss_pred HHHHHHHHHhhhhcCCCCCeEEEECC----CCcHHHHHHHHhcC-CC--EEeeCCCCCCC
Confidence 33333333 46776652 22 46778999996543 23 54455554444
No 466
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=49.94 E-value=1.2e+02 Score=30.29 Aligned_cols=36 Identities=25% Similarity=0.287 Sum_probs=27.4
Q ss_pred HHHHHhcCCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEE
Q 012398 401 LLDAVKAIKPTMLMGTSGVGKTFTKEVVEAMASFNEKPVIF 441 (464)
Q Consensus 401 L~e~v~~vkptvLIG~S~~~g~ft~evv~~Ma~~~erPIIF 441 (464)
+.+.++. .|++|-.|... .|.--++++|+ +..|||.
T Consensus 266 ~~~~~~~--adi~v~pS~~E-g~~~~~lEAma--~G~Pvv~ 301 (374)
T TIGR03088 266 VPALMQA--LDLFVLPSLAE-GISNTILEAMA--SGLPVIA 301 (374)
T ss_pred HHHHHHh--cCEEEeccccc-cCchHHHHHHH--cCCCEEE
Confidence 5566665 78888777654 48888999998 5789887
No 467
>PLN02568 polyamine oxidase
Probab=49.87 E-value=11 Score=41.69 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=20.9
Q ss_pred CcceEEEeCcchHHHHHHHHHHHH
Q 012398 328 ADQTFLFLGAGEAGTGIAELIALE 351 (464)
Q Consensus 328 ~d~riv~~GAGsAg~GiA~ll~~a 351 (464)
+..+|+|+|||.||++.|..|.+.
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~ 27 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTS 27 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhc
Confidence 346899999999999999999764
No 468
>PRK06126 hypothetical protein; Provisional
Probab=49.78 E-value=24 Score=38.17 Aligned_cols=36 Identities=22% Similarity=0.344 Sum_probs=27.7
Q ss_pred CCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccC
Q 012398 327 LADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKG 374 (464)
Q Consensus 327 l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~G 374 (464)
-.+.+|+|+|||.+|+..|-.|.. .|+ ++.++|+..
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~-----~G~-------~v~viEr~~ 40 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGR-----RGV-------DSILVERKD 40 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEeCCC
Confidence 345789999999999999988765 465 467777653
No 469
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=49.71 E-value=28 Score=30.65 Aligned_cols=31 Identities=29% Similarity=0.391 Sum_probs=25.1
Q ss_pred EEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccC
Q 012398 332 FLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKG 374 (464)
Q Consensus 332 iv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~G 374 (464)
|+|+|||+.|.-+|-.|.++ | .++.++++..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~-----g-------~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA-----G-------HDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT-----T-------CEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHC-----C-------CceEEEEccc
Confidence 78999999999999988653 3 4588888766
No 470
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=49.57 E-value=24 Score=37.99 Aligned_cols=24 Identities=17% Similarity=0.275 Sum_probs=21.9
Q ss_pred CCcceEEEeCcchHHHHHHHHHHH
Q 012398 327 LADQTFLFLGAGEAGTGIAELIAL 350 (464)
Q Consensus 327 l~d~riv~~GAGsAg~GiA~ll~~ 350 (464)
++++||+|+|.|..|.++|++|..
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~ 29 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRA 29 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHH
Confidence 567899999999999999999875
No 471
>PRK08219 short chain dehydrogenase; Provisional
Probab=49.53 E-value=70 Score=29.34 Aligned_cols=71 Identities=23% Similarity=0.276 Sum_probs=39.3
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchh-----hhh-hcCCCCCHH
Q 012398 330 QTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKP-----WAH-EHAPIKSLL 402 (464)
Q Consensus 330 ~riv~~GA-GsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~-----fa~-~~~~~~~L~ 402 (464)
.+++|.|| |..|..+++.|++. .++++++++. +.+...... +.+ +-.+..++.
T Consensus 4 ~~vlVtG~~g~iG~~l~~~l~~~-------------~~V~~~~r~~-------~~~~~~~~~~~~~~~~~~D~~~~~~~~ 63 (227)
T PRK08219 4 PTALITGASRGIGAAIARELAPT-------------HTLLLGGRPA-------ERLDELAAELPGATPFPVDLTDPEAIA 63 (227)
T ss_pred CEEEEecCCcHHHHHHHHHHHhh-------------CCEEEEeCCH-------HHHHHHHHHhccceEEecCCCCHHHHH
Confidence 47899887 66666676666431 3577787741 111111111 111 111123566
Q ss_pred HHHhcC-CCcEEEeccCCC
Q 012398 403 DAVKAI-KPTMLMGTSGVG 420 (464)
Q Consensus 403 e~v~~v-kptvLIG~S~~~ 420 (464)
++++.+ ++|++|-+.+..
T Consensus 64 ~~~~~~~~id~vi~~ag~~ 82 (227)
T PRK08219 64 AAVEQLGRLDVLVHNAGVA 82 (227)
T ss_pred HHHHhcCCCCEEEECCCcC
Confidence 777655 689999887654
No 472
>PRK06182 short chain dehydrogenase; Validated
Probab=49.51 E-value=43 Score=32.28 Aligned_cols=77 Identities=19% Similarity=0.226 Sum_probs=39.3
Q ss_pred CcceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhh-hhcCCCCCHHHHH
Q 012398 328 ADQTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWA-HEHAPIKSLLDAV 405 (464)
Q Consensus 328 ~d~riv~~GA-GsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa-~~~~~~~~L~e~v 405 (464)
+..+++|.|| |..|..+|+.+.+ .|. ++++++++- ++.+.+......+. -+-.+..++.+++
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~-----~G~-------~V~~~~r~~----~~l~~~~~~~~~~~~~Dv~~~~~~~~~~ 65 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAA-----QGY-------TVYGAARRV----DKMEDLASLGVHPLSLDVTDEASIKAAV 65 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHH-----CCC-------EEEEEeCCH----HHHHHHHhCCCeEEEeeCCCHHHHHHHH
Confidence 3568999997 5566666666653 352 577776641 10000111111111 1211223455556
Q ss_pred hcC-----CCcEEEeccCCC
Q 012398 406 KAI-----KPTMLMGTSGVG 420 (464)
Q Consensus 406 ~~v-----kptvLIG~S~~~ 420 (464)
+.+ ++|++|=..+..
T Consensus 66 ~~~~~~~~~id~li~~ag~~ 85 (273)
T PRK06182 66 DTIIAEEGRIDVLVNNAGYG 85 (273)
T ss_pred HHHHHhcCCCCEEEECCCcC
Confidence 544 799999776643
No 473
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=49.48 E-value=25 Score=35.38 Aligned_cols=38 Identities=16% Similarity=0.180 Sum_probs=30.4
Q ss_pred CcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCccc
Q 012398 328 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIV 377 (464)
Q Consensus 328 ~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~ 377 (464)
...+|+|+|+|-+|+.+|-.|.. .|. ++.++|++..-.
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~-----~G~-------~V~vie~~~~~~ 40 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAE-----RGA-------DVTVLEAGEAGG 40 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHH-----cCC-------EEEEEecCccCC
Confidence 35789999999999999988875 353 788999877643
No 474
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=49.40 E-value=20 Score=39.52 Aligned_cols=34 Identities=15% Similarity=0.216 Sum_probs=26.4
Q ss_pred HHHHHHhCCCCCcceEEEeCcchHHHHHHHHHHH
Q 012398 317 LSALKLVGGTLADQTFLFLGAGEAGTGIAELIAL 350 (464)
Q Consensus 317 l~Alk~~g~~l~d~riv~~GAGsAg~GiA~ll~~ 350 (464)
+.++.-...-|...|+.|+|-..-.+|+++.|.+
T Consensus 351 ~dam~d~~~~l~GKrvaI~gdpd~~~~l~~fL~E 384 (515)
T TIGR01286 351 VDAMTDSHAWLHGKRFAIYGDPDFVMGLVRFVLE 384 (515)
T ss_pred HHHHHHHHHHhcCceEEEECCHHHHHHHHHHHHH
Confidence 3344334456788999999999999999999975
No 475
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=49.27 E-value=19 Score=38.77 Aligned_cols=35 Identities=31% Similarity=0.526 Sum_probs=27.8
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 329 DQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 329 d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
.+||||+|+|-+|+..|+.+.... + .-+|.+||++
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~------~----~~~itLVd~~ 37 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKL------P----DVEITLVDRR 37 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcC------C----CCcEEEEeCC
Confidence 479999999999999999887532 1 2368899985
No 476
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=49.26 E-value=20 Score=38.93 Aligned_cols=23 Identities=30% Similarity=0.577 Sum_probs=19.9
Q ss_pred CcceEEEeCcchHHHHHHHHHHH
Q 012398 328 ADQTFLFLGAGEAGTGIAELIAL 350 (464)
Q Consensus 328 ~d~riv~~GAGsAg~GiA~ll~~ 350 (464)
.+.+|+|+|||.+|+..|..|..
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~~ 31 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLGQ 31 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHHH
Confidence 45689999999999999988865
No 477
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=49.08 E-value=20 Score=36.16 Aligned_cols=32 Identities=19% Similarity=0.272 Sum_probs=25.7
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccC
Q 012398 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKG 374 (464)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~G 374 (464)
.|+|+|||-+|+.+|-.|.+ .|. ++.++|+..
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~-----~G~-------~V~vle~~~ 33 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAAR-----RGL-------SVTVIERSS 33 (365)
T ss_pred CEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEeCCC
Confidence 48999999999999988865 253 588888763
No 478
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=49.05 E-value=22 Score=36.49 Aligned_cols=20 Identities=30% Similarity=0.292 Sum_probs=17.6
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 012398 331 TFLFLGAGEAGTGIAELIAL 350 (464)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~ 350 (464)
+|+|+|||.+|+..|-.|..
T Consensus 3 dV~IvGgG~~Gl~~A~~L~~ 22 (374)
T PRK06617 3 NTVILGCGLSGMLTALSFAQ 22 (374)
T ss_pred cEEEECCCHHHHHHHHHHHc
Confidence 68999999999999987754
No 479
>PRK06834 hypothetical protein; Provisional
Probab=48.99 E-value=22 Score=38.44 Aligned_cols=35 Identities=20% Similarity=0.407 Sum_probs=27.0
Q ss_pred CcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccC
Q 012398 328 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKG 374 (464)
Q Consensus 328 ~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~G 374 (464)
.+..|+|+|||.+|+..|-.|.. .|+ ++.++|+.-
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~-----~G~-------~v~vlEr~~ 36 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELAL-----AGV-------DVAIVERRP 36 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEecCC
Confidence 35689999999999999998865 365 366777653
No 480
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=48.97 E-value=19 Score=32.89 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=19.7
Q ss_pred CCCcceEEEeCcchHHHHHHHHHHH
Q 012398 326 TLADQTFLFLGAGEAGTGIAELIAL 350 (464)
Q Consensus 326 ~l~d~riv~~GAGsAg~GiA~ll~~ 350 (464)
.+++++|+|+|+|..|+-+|..|..
T Consensus 164 ~~~~k~V~VVG~G~SA~d~a~~l~~ 188 (203)
T PF13738_consen 164 DFKGKRVVVVGGGNSAVDIAYALAK 188 (203)
T ss_dssp GCTTSEEEEE--SHHHHHHHHHHTT
T ss_pred hcCCCcEEEEcChHHHHHHHHHHHh
Confidence 6788999999999999988877754
No 481
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=48.73 E-value=21 Score=37.69 Aligned_cols=33 Identities=27% Similarity=0.438 Sum_probs=27.0
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 329 DQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 329 d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
.-.|+|+|||+||+..|..+.+. | .++.++|++
T Consensus 5 ~yDvvVIGaGpaG~~aA~~la~~-----G-------~~v~liE~~ 37 (461)
T PRK05249 5 DYDLVVIGSGPAGEGAAMQAAKL-----G-------KRVAVIERY 37 (461)
T ss_pred cccEEEECCCHHHHHHHHHHHhC-----C-------CEEEEEecc
Confidence 34699999999999999988652 4 478899985
No 482
>KOG2250 consensus Glutamate/leucine/phenylalanine/valine dehydrogenases [Amino acid transport and metabolism]
Probab=48.62 E-value=1.7e+02 Score=32.66 Aligned_cols=175 Identities=19% Similarity=0.221 Sum_probs=110.0
Q ss_pred hHHHHHHHHHHHHHHhcCCCeeeeeecCCC--ccHHHHHHHHcC---C--Cc-----ee----ecCccchhHHHHHHHHH
Q 012398 255 EYAELLQEFMTAVKQNYGEKVLIQFEDFAN--HNAFELLSKYSS---S--HL-----VF----NDDIQGTASVVLAGILS 318 (464)
Q Consensus 255 ~y~~~idefv~av~~~fGp~~lIq~EDf~~--~~af~iL~ryr~---~--~~-----~F----nDDiQGTaaV~LAgll~ 318 (464)
|-..+.-.|+..+.+--||..=+==+|++. ..---+++.|+. . -| +- |+-.--|+-=+..++=+
T Consensus 159 Ei~r~~~~f~~el~~~iGp~~DvPapdig~G~rEm~~if~~Ya~~~g~~~a~vTGK~i~~GGs~~R~~ATG~GV~~y~e~ 238 (514)
T KOG2250|consen 159 EIERITRRFTDELIDIIGPDTDVPAPDIGTGPREMGWIFDEYAKTHGHWKAVVTGKPISLGGSHGRYEATGRGVVYYVEA 238 (514)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCccccccCcchhhhhHHHHHHhhcccceeeeCCCCccCCccCcccccchhHHHHHHH
Confidence 334455667777777778866666677762 223347788863 1 11 11 44444455545544444
Q ss_pred HHHHhC--CCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhc-hhhhhhc
Q 012398 319 ALKLVG--GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFK-KPWAHEH 395 (464)
Q Consensus 319 Alk~~g--~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k-~~fa~~~ 395 (464)
=+.-.+ +.+++.||++-|-|--|.-.|..|.+. | -+-|=+-|++|.|.... .+...+ ..++...
T Consensus 239 ~~~~~~~~~~~kgkr~~i~G~Gnv~~~aa~~l~~~-----G------~kvvavsD~~G~l~np~--Gid~~eL~~~~~~k 305 (514)
T KOG2250|consen 239 ILNDANGKKGIKGKRVVIQGFGNVGGHAAKKLSEK-----G------AKVVAVSDSKGVLINPD--GIDIEELLDLADEK 305 (514)
T ss_pred HHHhccCCCCcCceEEEEeCCCchHHHHHHHHHhc-----C------CEEEEEEcCceeEECCC--CCCHHHHHHHHHhh
Confidence 444444 789999999999999999999888764 3 35677899999998763 454433 3344322
Q ss_pred CCCCCHHH----------------HHhcCCCcEEEeccCCCCCCCHHHHHHH-HcCCCCcEEEEcCC-CC
Q 012398 396 APIKSLLD----------------AVKAIKPTMLMGTSGVGKTFTKEVVEAM-ASFNEKPVIFALSN-PT 447 (464)
Q Consensus 396 ~~~~~L~e----------------~v~~vkptvLIG~S~~~g~ft~evv~~M-a~~~erPIIFaLSN-Pt 447 (464)
..++++.+ -+. +.|+++=+.++ +.+|.|=.+.. +++| |+|.==|| ||
T Consensus 306 ~~i~~f~~~~~~~~~~~~~~~~~~~v~--~~DI~vPCA~q-n~I~~~nA~~lvak~~--~~IvEGAN~pt 370 (514)
T KOG2250|consen 306 KTIKSFDGAKLSYEGYIAGLPPWTLVE--KCDILVPCATQ-NEITGENAKALVAKGC--KYIVEGANMPT 370 (514)
T ss_pred ccccccccccccCccccccCcchhhHh--hCcEEeecCcc-CcccHhhHHHHHhcCC--cEEEecCCCCC
Confidence 22222221 122 58999999998 57776655554 5545 89999999 54
No 483
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=48.26 E-value=27 Score=37.49 Aligned_cols=34 Identities=24% Similarity=0.447 Sum_probs=26.9
Q ss_pred CcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 328 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 328 ~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
...+|+|+|+|.||+..|..+.. .|. ++.++|+.
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~-----~G~-------~V~i~e~~ 173 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILAR-----AGV-------QVVVFDRH 173 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH-----cCC-------eEEEEecC
Confidence 56799999999999999988754 353 46777765
No 484
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=48.25 E-value=60 Score=30.22 Aligned_cols=36 Identities=31% Similarity=0.324 Sum_probs=26.0
Q ss_pred CCCcceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 326 TLADQTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 326 ~l~d~riv~~GA-GsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
.+...+|+|.|| |..|..+++.+.. .|. ++++++++
T Consensus 3 ~~~~~~ilItGasg~iG~~l~~~l~~-----~g~-------~V~~~~r~ 39 (251)
T PRK12826 3 DLEGRVALVTGAARGIGRAIAVRLAA-----DGA-------EVIVVDIC 39 (251)
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHHH-----CCC-------EEEEEeCC
Confidence 356779999996 6777778887764 352 58888775
No 485
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=48.21 E-value=23 Score=37.73 Aligned_cols=33 Identities=21% Similarity=0.225 Sum_probs=26.6
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 329 DQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 329 d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
.-.+||+|+|+||+..|..+.+ .| .++.++|+.
T Consensus 4 ~ydvvVIG~GpaG~~aA~~aa~-----~G-------~~v~lie~~ 36 (472)
T PRK05976 4 EYDLVIIGGGPGGYVAAIRAGQ-----LG-------LKTALVEKG 36 (472)
T ss_pred cccEEEECCCHHHHHHHHHHHh-----CC-------CeEEEEEcc
Confidence 3469999999999999998765 25 478899975
No 486
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=48.20 E-value=28 Score=38.28 Aligned_cols=80 Identities=13% Similarity=0.230 Sum_probs=47.7
Q ss_pred CCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhhhh---cCCCCC
Q 012398 324 GGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWAHE---HAPIKS 400 (464)
Q Consensus 324 g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa~~---~~~~~~ 400 (464)
...|...|++|+|-++-++|+++.|... .|+. +..++.. .....+.+.+.-+.+... .++...
T Consensus 300 ~~~l~Gkrv~I~gd~~~a~~l~~~L~~E----LGm~-------vv~~g~~---~~~~~~~~~~~~~~~~~~~~i~~D~~e 365 (513)
T CHL00076 300 CQNLTGKKAVVFGDATHAASMTKILARE----MGIR-------VSCAGTY---CKHDAEWFKEQVQGFCDEILITDDHTE 365 (513)
T ss_pred ccccCCCEEEEEcCchHHHHHHHHHHHh----CCCE-------EEEecCc---ccchhHHHHHHHHHhccCcEEecCHHH
Confidence 3778999999999999999999988754 4874 2233321 110000011111111110 012235
Q ss_pred HHHHHhcCCCcEEEecc
Q 012398 401 LLDAVKAIKPTMLMGTS 417 (464)
Q Consensus 401 L~e~v~~vkptvLIG~S 417 (464)
+.+.|+..+||++||-|
T Consensus 366 i~~~I~~~~pdliiGs~ 382 (513)
T CHL00076 366 VGDMIARVEPSAIFGTQ 382 (513)
T ss_pred HHHHHHhcCCCEEEECc
Confidence 77888999999999965
No 487
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=48.18 E-value=22 Score=38.38 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=22.3
Q ss_pred CCcceEEEeCcchHHHHHHHHHHHH
Q 012398 327 LADQTFLFLGAGEAGTGIAELIALE 351 (464)
Q Consensus 327 l~d~riv~~GAGsAg~GiA~ll~~a 351 (464)
+++++|||+|+|..|+-||..|...
T Consensus 202 ~~gk~VvVVG~G~Sg~diA~~L~~~ 226 (461)
T PLN02172 202 FKNEVVVVIGNFASGADISRDIAKV 226 (461)
T ss_pred cCCCEEEEECCCcCHHHHHHHHHHh
Confidence 6889999999999999999988653
No 488
>PRK07190 hypothetical protein; Provisional
Probab=48.17 E-value=23 Score=38.41 Aligned_cols=33 Identities=27% Similarity=0.280 Sum_probs=24.6
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 329 DQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 329 d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
...|+|+|||.+|+..|-.|.. .|+ ++.++|+.
T Consensus 5 ~~dVlIVGAGPaGL~lA~~Lar-----~Gi-------~V~llEr~ 37 (487)
T PRK07190 5 VTDVVIIGAGPVGLMCAYLGQL-----CGL-------NTVIVDKS 37 (487)
T ss_pred cceEEEECCCHHHHHHHHHHHH-----cCC-------CEEEEeCC
Confidence 3579999999999999876643 365 36667765
No 489
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=48.16 E-value=25 Score=39.36 Aligned_cols=35 Identities=26% Similarity=0.450 Sum_probs=28.3
Q ss_pred CcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccC
Q 012398 328 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKG 374 (464)
Q Consensus 328 ~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~G 374 (464)
...||+|+|+|.||+..|..|.. .|. ++.++|+..
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~-----~G~-------~Vtv~e~~~ 343 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILAR-----AGV-------QVDVFDRHP 343 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHH-----cCC-------cEEEEeCCC
Confidence 57999999999999999998875 353 477787763
No 490
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=48.06 E-value=51 Score=30.66 Aligned_cols=48 Identities=29% Similarity=0.344 Sum_probs=30.4
Q ss_pred HHHHHHHHHhCCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 314 AGILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 314 Agll~Alk~~g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
+..+.++...+.-..+++|+|+|+|+.|..++++... .| .+++.++++
T Consensus 120 ~~a~~~l~~~~~~~~~~~vli~g~~~~G~~~~~~a~~-----~g-------~~v~~~~~~ 167 (271)
T cd05188 120 ATAYHALRRAGVLKPGDTVLVLGAGGVGLLAAQLAKA-----AG-------ARVIVTDRS 167 (271)
T ss_pred HHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHH-----cC-------CeEEEEcCC
Confidence 3334455555554578899999999877666654432 34 357777664
No 491
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=48.03 E-value=19 Score=41.13 Aligned_cols=36 Identities=14% Similarity=0.146 Sum_probs=27.8
Q ss_pred CCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 326 TLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 326 ~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
.-+..+|+|+|||.||+..|-.|.. .|+ ++.++++.
T Consensus 78 ~~~~~~VlIVGgGIaGLalAlaL~r-----~Gi-------~V~V~Er~ 113 (668)
T PLN02927 78 KKKKSRVLVAGGGIGGLVFALAAKK-----KGF-------DVLVFEKD 113 (668)
T ss_pred ccCCCCEEEECCCHHHHHHHHHHHh-----cCC-------eEEEEecc
Confidence 3556789999999999999988875 365 46666664
No 492
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=47.99 E-value=48 Score=33.35 Aligned_cols=31 Identities=19% Similarity=0.437 Sum_probs=25.2
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 331 TFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 331 riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
+|.|+|.|..|.++|..+... | .+++++|+.
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~-----G-------~~V~v~d~~ 33 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQ-----G-------HQLQVFDVN 33 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHC-----C-------CeEEEEcCC
Confidence 799999999999999998652 4 357888763
No 493
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=47.81 E-value=31 Score=36.23 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=21.4
Q ss_pred CCcceEEEeCcchHHHHHHHHHHH
Q 012398 327 LADQTFLFLGAGEAGTGIAELIAL 350 (464)
Q Consensus 327 l~d~riv~~GAGsAg~GiA~ll~~ 350 (464)
+++.+++|.|+|..|.++|+.|.+
T Consensus 3 ~~~k~v~v~G~g~~G~s~a~~l~~ 26 (447)
T PRK02472 3 YQNKKVLVLGLAKSGYAAAKLLHK 26 (447)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHH
Confidence 567899999999999999998875
No 494
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=47.75 E-value=58 Score=33.47 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=19.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHH
Q 012398 330 QTFLFLGAGEAGTGIAELIALE 351 (464)
Q Consensus 330 ~riv~~GAGsAg~GiA~ll~~a 351 (464)
.||.|+|||+.|.-.|-.|.++
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~ 22 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKA 22 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhC
Confidence 4899999999999999888764
No 495
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=47.56 E-value=19 Score=40.50 Aligned_cols=35 Identities=23% Similarity=0.378 Sum_probs=27.0
Q ss_pred CcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 328 ADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 328 ~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
++..|+|+|||.||+..|-.|... .|+ ++.++|++
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~----~Gi-------~v~IiE~~ 65 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAF----PDI-------TTRIVERK 65 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcC----CCC-------cEEEEEcC
Confidence 456899999999999999988651 255 36677766
No 496
>PRK08655 prephenate dehydrogenase; Provisional
Probab=47.41 E-value=74 Score=34.23 Aligned_cols=31 Identities=13% Similarity=0.273 Sum_probs=24.1
Q ss_pred eEEEeC-cchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEccc
Q 012398 331 TFLFLG-AGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSK 373 (464)
Q Consensus 331 riv~~G-AGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~ 373 (464)
||.|+| .|..|..+|..+... |. +++++|++
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~-----G~-------~V~v~~r~ 33 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEK-----GF-------EVIVTGRD 33 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHC-----CC-------EEEEEECC
Confidence 789998 699999999988652 42 57777764
No 497
>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]
Probab=47.35 E-value=43 Score=33.60 Aligned_cols=103 Identities=19% Similarity=0.334 Sum_probs=58.8
Q ss_pred CCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhc--hhhhhhcC---CC-
Q 012398 325 GTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFK--KPWAHEHA---PI- 398 (464)
Q Consensus 325 ~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k--~~fa~~~~---~~- 398 (464)
+++++...+|.|+|+ ||.+-|...|.+ .|. |+.++|.+----..-...|..+. ..|.-+-. ..
T Consensus 10 ~r~~sk~~~vtGg~s---GIGrAia~~la~-~Ga-------rv~v~dl~~~~A~ata~~L~g~~~h~aF~~DVS~a~~v~ 78 (256)
T KOG1200|consen 10 QRLMSKVAAVTGGSS---GIGRAIAQLLAK-KGA-------RVAVADLDSAAAEATAGDLGGYGDHSAFSCDVSKAHDVQ 78 (256)
T ss_pred HHHhcceeEEecCCc---hHHHHHHHHHHh-cCc-------EEEEeecchhhHHHHHhhcCCCCccceeeeccCcHHHHH
Confidence 356778888898764 466666666655 463 57777764211000011243322 22332211 11
Q ss_pred CCHHHHHhcC-CCcEEEeccCCC----------------------CCC--CHHHHHHHHcCCCCc
Q 012398 399 KSLLDAVKAI-KPTMLMGTSGVG----------------------KTF--TKEVVEAMASFNEKP 438 (464)
Q Consensus 399 ~~L~e~v~~v-kptvLIG~S~~~----------------------g~f--t~evv~~Ma~~~erP 438 (464)
..|+|+++.. .|++|+-+.+.. |+| |+..+|+|-.++.+|
T Consensus 79 ~~l~e~~k~~g~psvlVncAGItrD~~Llrmkq~qwd~vi~vNL~gvfl~tqaa~r~~~~~~~~~ 143 (256)
T KOG1200|consen 79 NTLEEMEKSLGTPSVLVNCAGITRDGLLLRMKQEQWDSVIAVNLTGVFLVTQAAVRAMVMNQQQG 143 (256)
T ss_pred HHHHHHHHhcCCCcEEEEcCccccccceeeccHHHHHHHHHhhchhhHHHHHHHHHHHHHhcCCC
Confidence 3588888877 688998776543 333 677788877667776
No 498
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=47.00 E-value=80 Score=33.09 Aligned_cols=111 Identities=16% Similarity=0.167 Sum_probs=60.3
Q ss_pred HhCCCCCcceEEEeCc-chHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCC--ccCCch-h-chhhhh-hc
Q 012398 322 LVGGTLADQTFLFLGA-GEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSR--KESLQH-F-KKPWAH-EH 395 (464)
Q Consensus 322 ~~g~~l~d~riv~~GA-GsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r--~~~l~~-~-k~~fa~-~~ 395 (464)
..++.-+++||+|.|| |-.|..+++.|++ .|. +++.++++.--.... ...+.. . ...+.. +.
T Consensus 53 ~~~~~~~~~kVLVtGatG~IG~~l~~~Ll~-----~G~-------~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 120 (390)
T PLN02657 53 FRSKEPKDVTVLVVGATGYIGKFVVRELVR-----RGY-------NVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDV 120 (390)
T ss_pred ccccCCCCCEEEEECCCcHHHHHHHHHHHH-----CCC-------EEEEEEechhhccccchhhHHhhhcCCceEEEeeC
Confidence 3466778899999998 8888889888865 352 577777643100000 000000 0 001111 11
Q ss_pred CCCCCHHHHHhcC--CCcEEEeccCCC-C----CC------CHHHHHHHHcCCCCcEEEEcCC
Q 012398 396 APIKSLLDAVKAI--KPTMLMGTSGVG-K----TF------TKEVVEAMASFNEKPVIFALSN 445 (464)
Q Consensus 396 ~~~~~L~e~v~~v--kptvLIG~S~~~-g----~f------t~evv~~Ma~~~erPIIFaLSN 445 (464)
.+..++..+++.. ++|++|=+.+.. + .+ +..+++.+.+..-+-+|| +|.
T Consensus 121 ~d~~~l~~~~~~~~~~~D~Vi~~aa~~~~~~~~~~~vn~~~~~~ll~aa~~~gv~r~V~-iSS 182 (390)
T PLN02657 121 TDADSLRKVLFSEGDPVDVVVSCLASRTGGVKDSWKIDYQATKNSLDAGREVGAKHFVL-LSA 182 (390)
T ss_pred CCHHHHHHHHHHhCCCCcEEEECCccCCCCCccchhhHHHHHHHHHHHHHHcCCCEEEE-Eee
Confidence 2224577778765 599998544322 1 11 345677776554455776 453
No 499
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=46.55 E-value=44 Score=35.63 Aligned_cols=87 Identities=11% Similarity=0.071 Sum_probs=47.7
Q ss_pred HHHHHHHhCCCCCcceEEEeCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCcccCCCccCCchhchhhh---
Q 012398 316 ILSALKLVGGTLADQTFLFLGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGLIVSSRKESLQHFKKPWA--- 392 (464)
Q Consensus 316 ll~Alk~~g~~l~d~riv~~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GLl~~~r~~~l~~~k~~fa--- 392 (464)
+..++.-..+.|+..|++++|.++-.-.++.++. +.|+. +..+ |.-.... ++....++...
T Consensus 287 ~~~~l~~~~~~L~Gkrv~i~~g~~~~~~~~~~l~-----elGme-------vv~~---g~~~~~~-~~~~~~~~~~~~~~ 350 (421)
T cd01976 287 MEAVIAKYRPRLEGKTVMLYVGGLRPRHYIGAYE-----DLGME-------VVGT---GYEFAHR-DDYERTEVIPKEGT 350 (421)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHH-----HCCCE-------EEEE---EeecCCH-HHHhhHHhhcCCce
Confidence 4566666778899999999987765556665443 35873 2211 0000000 00111111000
Q ss_pred --hhcCCCCCHHHHHhcCCCcEEEeccC
Q 012398 393 --HEHAPIKSLLDAVKAIKPTMLMGTSG 418 (464)
Q Consensus 393 --~~~~~~~~L~e~v~~vkptvLIG~S~ 418 (464)
-+..+...+++.++..+||++||-|.
T Consensus 351 ~i~~~~d~~e~~~~i~~~~pDliig~~~ 378 (421)
T cd01976 351 LLYDDVTHYELEEFVKRLKPDLIGSGIK 378 (421)
T ss_pred EEEcCCCHHHHHHHHHHhCCCEEEecCc
Confidence 01112236888899999999999775
No 500
>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family. Members of this protein family include enzymes related to SagC, a cyclodehydratase involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins. Note that this model does not find all possible examples of bacteriocin biosynthesis cyclodehydratases, an in particular misses the E. coli plasmid protein McbB of microcin B17 biosynthesis.
Probab=46.40 E-value=38 Score=35.07 Aligned_cols=147 Identities=14% Similarity=0.104 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHhcCCCeee-eeecCC---CccHHHHHHHHcCCCceeecCccchhHHHHHHHHHHHHHhCCCCCcceEEE
Q 012398 259 LLQEFMTAVKQNYGEKVLI-QFEDFA---NHNAFELLSKYSSSHLVFNDDIQGTASVVLAGILSALKLVGGTLADQTFLF 334 (464)
Q Consensus 259 ~idefv~av~~~fGp~~lI-q~EDf~---~~~af~iL~ryr~~~~~FnDDiQGTaaV~LAgll~Alk~~g~~l~d~riv~ 334 (464)
|...|-+-++..+ -.-+| .++|+. .+--..-++||..++..+.- +-+.. ..++|++.+|+
T Consensus 17 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~ry~r~l~l~~~-~~~~~-------------~Q~kL~~s~Vl- 80 (318)
T TIGR03603 17 FVSTFKEIVKKLV-KGITISDEDAYENDLETLTKFNLITIIDNLTLKPM-LIVED-------------YQKHLKKSKVL- 80 (318)
T ss_pred HHHHHHHHHHHHh-cCccccchHHHHhhhhccCHHHHHHHHHHhcCccc-cCcHH-------------HHHHHhhCeee-
Confidence 3444444455555 44456 555552 22334567899876654321 11110 12567888888
Q ss_pred eCcchHHHHHHHHHHHHHHHhcCCChhhhcCeEEEEcccCc-------ccCCCccCCchhchhhhhh-------cCCCCC
Q 012398 335 LGAGEAGTGIAELIALEMSKQTKAPIEEARKKIWLVDSKGL-------IVSSRKESLQHFKKPWAHE-------HAPIKS 400 (464)
Q Consensus 335 ~GAGsAg~GiA~ll~~a~~~~~G~s~~eA~~~i~lvD~~GL-------l~~~r~~~l~~~k~~fa~~-------~~~~~~ 400 (464)
+|.-|.-+|..|.. | ..+|.++|.+=+ ++.. +++-..|..-|+. .-.+..
T Consensus 81 --~GGLGs~va~~La~------G------Vg~L~ivD~D~Ve~SNL~~L~~~--~diG~~K~~~a~~~L~~lnp~v~i~~ 144 (318)
T TIGR03603 81 --LGKFGANIAYNLCN------N------VGALFISDKTYFQETAEIDLYSK--EFILKKDIRDLTSNLDALELTKNVDE 144 (318)
T ss_pred --cccchHHHHHHHhC------C------CCEEEEEcCCEechhhHHHHhCh--hhcCcHHHHHHHHHHHHhCCCCEEee
Confidence 77777777776653 4 368999998633 1111 1232333333321 112346
Q ss_pred HHHHHhcCCCcEEEeccCCCCCCCHHH---HHHHHcCCCCcEEEE
Q 012398 401 LLDAVKAIKPTMLMGTSGVGKTFTKEV---VEAMASFNEKPVIFA 442 (464)
Q Consensus 401 L~e~v~~vkptvLIG~S~~~g~ft~ev---v~~Ma~~~erPIIFa 442 (464)
+.+.+++ .|++|-++- -|.... +-..+.....|.|++
T Consensus 145 ~~~li~~--~DlVid~tD---n~~~r~L~~iN~ac~~~~~PlV~g 184 (318)
T TIGR03603 145 LKDLLKD--YNYIIICTE---HSNISLLRGLNKLSKETKKPNTIA 184 (318)
T ss_pred HHHHhCC--CCEEEECCC---CccHhHHHHHHHHHHHHCCCEEEE
Confidence 7788877 788887774 344322 555555567998854
Done!