Query 012401
Match_columns 464
No_of_seqs 179 out of 233
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 08:44:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012401.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012401hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jb7_A Telomere-binding protei 100.0 5.4E-82 1.9E-86 663.5 32.3 388 3-462 31-494 (495)
2 1xjv_A Protection of telomeres 100.0 5E-60 1.7E-64 470.7 27.8 270 6-300 2-285 (294)
3 4hik_A Protection of telomeres 100.0 2.9E-33 9.9E-38 246.4 13.7 127 155-303 3-142 (143)
4 1qzg_A Protection of telomeres 100.0 1E-32 3.5E-37 252.1 17.0 141 7-148 26-174 (187)
5 4gop_C Putative uncharacterize 99.2 3.4E-09 1.2E-13 110.6 26.7 307 10-403 3-372 (444)
6 1jmc_A Protein (replication pr 98.6 2.3E-06 7.7E-11 82.0 18.1 224 8-303 6-241 (246)
7 2k50_A Replication factor A re 98.4 1E-06 3.4E-11 74.6 9.3 93 5-103 2-99 (115)
8 2k75_A Uncharacterized protein 98.2 5.7E-06 1.9E-10 69.1 10.1 88 8-108 1-91 (106)
9 1o7i_A SSB, SSO2364, single st 98.1 4.4E-05 1.5E-09 64.9 12.2 89 10-108 2-94 (119)
10 1jmc_A Protein (replication pr 98.0 2.3E-05 7.8E-10 74.9 10.4 91 6-101 122-218 (246)
11 4gop_C Putative uncharacterize 98.0 3.3E-05 1.1E-09 80.4 11.4 91 6-99 117-215 (444)
12 2kbn_A Conserved protein; nucl 97.7 0.0004 1.4E-08 58.1 11.5 84 10-103 5-88 (109)
13 3dm3_A Replication factor A; p 97.6 0.00021 7.3E-09 59.3 8.5 84 9-101 4-92 (105)
14 2k75_A Uncharacterized protein 97.6 0.00086 2.9E-08 55.7 12.0 87 159-293 4-98 (106)
15 2k50_A Replication factor A re 97.4 0.0008 2.7E-08 56.5 10.1 90 159-290 8-107 (115)
16 3e0e_A Replication protein A; 97.4 0.00085 2.9E-08 54.8 9.2 82 11-101 3-88 (97)
17 1o7i_A SSB, SSO2364, single st 97.4 0.0018 6.2E-08 54.8 11.5 88 159-291 3-99 (119)
18 2kbn_A Conserved protein; nucl 97.3 0.0041 1.4E-07 51.8 12.7 89 159-291 6-97 (109)
19 1wjj_A Hypothetical protein F2 97.2 0.0013 4.5E-08 57.7 8.5 90 5-103 11-114 (145)
20 1wjj_A Hypothetical protein F2 97.1 0.0074 2.5E-07 52.9 13.1 51 238-292 74-124 (145)
21 3dm3_A Replication factor A; p 96.8 0.012 4E-07 48.7 11.3 85 157-287 5-99 (105)
22 3e0e_A Replication protein A; 96.3 0.038 1.3E-06 44.8 10.6 92 159-286 3-94 (97)
23 1ynx_A Replication factor-A pr 95.8 0.061 2.1E-06 44.9 10.0 55 236-291 51-112 (114)
24 1xjv_A Protection of telomeres 95.3 0.18 6.3E-06 49.0 12.7 85 156-281 5-94 (294)
25 1qzg_A Protection of telomeres 94.3 0.37 1.3E-05 43.7 11.2 86 161-282 36-128 (187)
26 3u4z_A Telomerase-associated p 94.1 0.48 1.7E-05 36.5 9.6 87 12-107 3-90 (109)
27 1l1o_C Replication protein A 7 93.8 0.44 1.5E-05 43.0 10.8 72 331-402 5-106 (181)
28 4gop_B Putative uncharacterize 92.4 0.97 3.3E-05 38.6 10.3 69 22-101 37-109 (136)
29 1ynx_A Replication factor-A pr 92.0 0.049 1.7E-06 45.5 1.5 81 9-95 3-88 (114)
30 1miu_A BRCA2, breast cancer ty 91.7 1.5 5.2E-05 47.5 12.9 152 44-270 511-670 (738)
31 3kdf_D Replication protein A 3 91.6 1.5 5.2E-05 37.2 10.5 70 22-101 32-104 (132)
32 3ebe_A Protein MCM10 homolog; 90.9 0.22 7.6E-06 45.8 4.8 82 7-90 35-123 (200)
33 3u58_A Tetrahymena TEB1 AB; te 90.8 1.7 5.7E-05 37.1 9.7 85 11-103 120-205 (213)
34 4hik_A Protection of telomeres 89.9 0.54 1.8E-05 40.8 6.1 77 9-94 4-101 (143)
35 1jb7_A Telomere-binding protei 88.9 2.1 7.2E-05 44.7 10.8 105 156-290 37-151 (495)
36 2pi2_A Replication protein A 3 87.8 3.3 0.00011 39.5 10.8 81 11-101 49-144 (270)
37 3u50_C Telomerase-associated p 83.8 0.33 1.1E-05 43.5 1.3 32 372-403 72-103 (172)
38 4gop_B Putative uncharacterize 80.8 21 0.00072 30.0 11.7 86 166-297 35-123 (136)
39 3kdf_D Replication protein A 3 77.6 30 0.001 28.9 12.4 82 168-294 32-115 (132)
40 2pi2_A Replication protein A 3 74.3 40 0.0014 31.9 12.7 81 168-293 72-154 (270)
41 3kf6_A Protein STN1; OB fold, 59.8 87 0.003 27.2 11.1 29 167-197 47-75 (159)
42 3r8s_P 50S ribosomal protein L 59.3 19 0.00065 29.7 6.0 42 70-112 14-63 (114)
43 3kf6_A Protein STN1; OB fold, 59.1 13 0.00045 32.6 5.3 71 22-101 48-121 (159)
44 2ftc_K 39S ribosomal protein L 56.7 18 0.00061 29.1 5.2 43 72-115 1-50 (98)
45 1miu_A BRCA2, breast cancer ty 54.5 31 0.0011 37.5 8.3 72 11-93 597-672 (738)
46 3f2b_A DNA-directed DNA polyme 51.1 20 0.00069 40.7 6.4 85 9-99 6-94 (1041)
47 3v2d_T 50S ribosomal protein L 48.1 33 0.0011 29.5 5.8 41 70-111 17-65 (146)
48 3f2b_A DNA-directed DNA polyme 42.9 58 0.002 37.0 8.5 40 159-198 8-51 (1041)
49 3mxn_A RECQ-mediated genome in 42.6 35 0.0012 29.8 5.2 70 327-402 17-87 (157)
50 2hpi_A DNA polymerase III alph 31.3 35 0.0012 39.4 4.4 76 11-91 1027-1107(1220)
51 2zjr_M 50S ribosomal protein L 27.1 48 0.0016 29.1 3.5 42 70-112 22-71 (166)
52 3afp_A Single-stranded DNA-bin 26.5 65 0.0022 28.2 4.4 73 22-94 5-90 (168)
No 1
>1jb7_A Telomere-binding protein alpha subunit; DNA-protein interactions, DNA HYDR sodium ION, quadruplex DNA, DNA-binding protein-DNA complex; 1.86A {Sterkiella nova} SCOP: b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1kix_A 1otc_A* 2i0q_A 1ph6_A 1ph1_A 1phj_A* 1ph3_A 1pa6_A 1ph4_A 1ph7_A 1ph8_A 1ph9_A 1ph5_A* 1ph2_A* 1k8g_A
Probab=100.00 E-value=5.4e-82 Score=663.54 Aligned_cols=388 Identities=20% Similarity=0.275 Sum_probs=333.3
Q ss_pred CCCCCcceeehhhhhhccCCEEEEEEEEEEcCCccccCCCceEEEEEEEeCCCCC-----CCe-----EEEEecCCCCCC
Q 012401 3 SQRNQGGIVRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQS-----PEL-----LVNIFTSSIDQL 72 (464)
Q Consensus 3 ~~~~~y~y~~i~d~~~~~~~~vnviGVVvd~~~P~~trG~D~~~tl~I~D~S~~~-----~gl-----~v~iF~~~~~~L 72 (464)
+..++|+|++|++|....++.|||||||+|+++|++|+|+||+|||+|+|+|+.. .|| +|+||++++++|
T Consensus 31 ~~~~~y~y~~L~~a~~~~~~~VnviGVVvd~~~P~~T~G~D~~~t~tI~D~S~~~~~~~~~Gl~~~~~~v~iF~~~~e~L 110 (495)
T 1jb7_A 31 DKGHKYEYVELAKASLTSAQPQHFYAVVIDATFPYKTNQERYICSLKIVDPTLYLKQQKGAGDASDYATLVLYAKRFEDL 110 (495)
T ss_dssp -----CCBCCTTTSCSSCCSCEEEEEEEEEECCCEECSSSCEEEEEEEEBTTBSBCCTTSSCSCBCCEEEEEEESSGGGS
T ss_pred cccCCCccEEHHHHHhccCCeEEEEEEEeecCCceecCCCeEEEEEEEEeCCCCcccccccccccCceEEEEECCChHHC
Confidence 4577899999999998889999999999999999999999999999999999982 389 999999999999
Q ss_pred CCCCCCCCEEEEeeEEEEEEcCeeEEEeccCc-cEEEEEeCCC------------CCCCCccccCCCCCCCCHHHHHHHH
Q 012401 73 PRVLSPRDLILLKNVMIKKHQAELSAVFYKDS-SSFALFDGNS------------GSNLLPYQSSPQRFEITEAEERRIN 139 (464)
Q Consensus 73 P~v~~~GDII~l~rvkv~~~~g~~~~~~~~~~-ss~~lf~~~~------------~~~~~Py~~s~~~~~~~~~e~~~v~ 139 (464)
|.|.++||||+|||++|+.|+|+++++++..+ ||||||++.. +.++.||+.|+.+|+++++|++++.
T Consensus 111 P~V~~~GDII~LhrvkIq~~ng~~~~v~~~~~~SswavF~~~~~~~~~~i~~~~~~~~~~P~~~S~~~~~~~~~d~~~v~ 190 (495)
T 1jb7_A 111 PIIHRAGDIIRVHRATLRLYNGQRQFNANVFYSSSWALFSTDKRSVTQEINNQDAVSDTTPFSFSSKHATIEKNEISILQ 190 (495)
T ss_dssp CCCCEETCEEEEEEEEEEEETTEEEEEEETTTTCEEEEECSSSSCHHHHHHTCCCSCTTSCSEESSSCCCCCTTHHHHHH
T ss_pred CCCCCCCCEEEEEEEEEEEECCcEEEEecCCCceEEEEEeCCccccccccCCcccCcccCCccccCCCccCCHHHHHHHH
Confidence 99988999999999999999999999998776 8999999987 6778999998667999999999999
Q ss_pred HHHHhhhcCccc---CCCcccccccc-cccCCceEeeEEEEEEeeeeCCCCeEEEEEEcCCCCCCCCCCCCCCcccCCCC
Q 012401 140 VLRQWCVGFEFS---SGSNDYLLSLK-DISEHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPL 215 (464)
Q Consensus 140 ~Lr~W~~~~~~~---~~~~~f~~~Lk-di~~~~f~Dlv~qVv~v~~~~~~~~~~L~VwDgT~~~~~~~~~~~~~~~~~~~ 215 (464)
.||+|+.++... .++.+| .+|+ ||++++||||+|||||++ ..++++++|||||||++|+++
T Consensus 191 ~LR~W~~~~~~~~~~~~~~~f-~~L~~di~~~~f~DLv~qVv~~~-~~d~~~~~L~VwDgT~~~~~~------------- 255 (495)
T 1jb7_A 191 NLRKWANQYFSSYSVISSDMY-TALNKAQAQKGDFDVVAKILQVH-ELDEYTNELKLKDASGQVFYT------------- 255 (495)
T ss_dssp HHHHHHHHHHHHSCSSCGGGS-CCGGGGGGCSSCEEEEEEEEEEE-ECSSSEEEEEEEETTCCEEEE-------------
T ss_pred HHHHHHHhcccccccccccch-hhhhhhhccCCceeEEEEEeEEe-ccCCCeEEEEEEeCCCCCcce-------------
Confidence 999999887653 255678 8999 999999999999999999 557899999999999998865
Q ss_pred CCcccCCCCCccccccCCCc--ceEEEEEecccchhhh-ccCCCCCcEEEEeCcEEEEeCcEEEEEEecCcceE------
Q 012401 216 PLHIESSPLDLETLRNFFPV--GTVLRVSTDRSYENFG-RYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIR------ 286 (464)
Q Consensus 216 p~~~~~~~l~~~~~~~~p~~--G~vl~V~~~~~~~~~~-~~~~k~G~wV~l~Nv~~k~~~g~leG~l~~~ski~------ 286 (464)
++.++++|.+ |.+|+|..++..+..+ .+.++.|+| +||. ++..++|++
T Consensus 256 ----------~~~~~~fP~~~~G~Vlri~~~~~de~~~~l~~~~~~~w---~ni~----------~~~~~sk~~ke~~~~ 312 (495)
T 1jb7_A 256 ----------LSLKLKFPHVRTGEVVRIRSATYDETSTQKKVLILSHY---SNII----------TFIQSSKLAKELRAK 312 (495)
T ss_dssp ----------EEETTTCTTCCTTCEEEEEEEEECTTCCSSCEEEEEEE---EEEE----------EECTTCHHHHHHHHH
T ss_pred ----------eeccccCCceeeEEEEEEecCccchhhhhhhhhccccc---ccee----------EEcccchhhhhhhhc
Confidence 3567999988 9999999987665544 467889999 5777 556678887
Q ss_pred EcCCCChhHHHHHHHHHHHhCCCCCCCCccCCCCCCCcccc--cCCCccccHHHHhhC----CCCCce--eEEEEEEEee
Q 012401 287 LFSDNDNVVWDYMRFRERISGGHGHMPIWTDPSSQFLTEVD--WVNVASVTLMKIATQ----LQGNVR--CCCIVRVVSI 358 (464)
Q Consensus 287 ~l~~~d~~v~~r~ry~~r~~~~~~~~~~~~~~~~~~~t~~~--~~~~p~ttL~dIL~~----p~v~~k--fr~~VRVV~~ 358 (464)
+++++ +.++. + +|+++.++++.+|+++ |+++|+|||||||++ |++++| |||+||||+|
T Consensus 313 ~l~~~---~~~~~----~-------~~~~~~~~~~~lT~~~~~~~~~p~ttL~dIL~~~~~~~~v~~K~~fr~~VRVV~~ 378 (495)
T 1jb7_A 313 IQDDH---SVEVA----S-------LKKNVSLNAVVLTEVDKKHAALPSTSLQDLFHHADSDKELQAQDTFRTQFYVTKI 378 (495)
T ss_dssp SCCCC---HHHHH----H-------TTSSSCSSCEECEEECGGGTTSCBCCHHHHHHTTTTCHHHHTCSEEEEEEEEEEE
T ss_pred ccchh---hhhhh----h-------cccccCCCCCcCCeecccCCCCCcEEHHHHhcCcccCccccccccEEEEEEEEEe
Confidence 77665 22322 1 5677777788899988 999999999999987 889888 9999999999
Q ss_pred cCCCccccccC-----------C-----CCeEEEEEEEEeCCC-------ceEEEEEeccccccccCCCCC---------
Q 012401 359 HPFQAEHYSSP-----------N-----GSSEYTMKLTLEDPT-------ARIHALLCGKEWVKFFGGSPP--------- 406 (464)
Q Consensus 359 ~P~~~edf~~~-----------~-----~~w~~rf~L~lED~t-------~ri~~~v~~~da~~f~~~~~~--------- 406 (464)
||+++||||++ . |+.+|||+|+|||+| +||+|||+|+||+.||+ +++
T Consensus 379 ~P~~i~df~~~~~~~~~~~~s~~g~~~~~~~~~~f~LlveD~t~~~~~~~~ri~l~v~g~~~a~Fl~-l~a~nL~~n~~~ 457 (495)
T 1jb7_A 379 EPSDVKEWVKGYDRKTKKSSSLKGASGKGDNIFQVQFLVKDASTQLNNNTYRVLLYTQDGLGANFFN-VKADNLHKNADA 457 (495)
T ss_dssp ESSSGGGGEEEEETTTTEEECSTTCGGGCEEEEEEEEEEECGGGTTBSEEEEEEEECTTSTTTTTTS-SCCCCTTTCHHH
T ss_pred cCCCHHHhhhhhccccccccccccccCCCCceEEEEEEEecCCCCCCCcccEEEEEEeCcchheecC-CChHhhhcCHHH
Confidence 99999999943 2 367999999999999 99999999999999998 643
Q ss_pred hHHHHHHHHHHcCCCCCCCCCCCCccCCcceeEeeeeeeecCCceEEEEEeeeEEc
Q 012401 407 PDVLTKKIKMLLGMPEHEDGNDDMVRNPPWIKCFLHLKESDGGRNRVYYIRWTKLV 462 (464)
Q Consensus 407 ~~~L~~kl~~L~G~~e~~~~~~~~~~~~pw~~CCi~sY~v~~~~~r~f~~F~T~i~ 462 (464)
+.+|||||..|.- ..+ ||+|||+. ++..|+||+|+|+
T Consensus 458 ~~~L~e~~~~l~~-----------~~~--~~d~~~~~------~~~~y~~~~t~~~ 494 (495)
T 1jb7_A 458 RKKLEDSAELLTK-----------FNS--YVDAVVER------RNGFYLIKDTKLI 494 (495)
T ss_dssp HHHHHHHHHHHHS-----------TTE--EEEEEEEE------ETTEEEEESEEEC
T ss_pred HHHHHHHHHHhcc-----------CCc--eEEEEEEe------ecceEEeeeeeec
Confidence 5899999998752 122 99999954 2779999999995
No 2
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A
Probab=100.00 E-value=5e-60 Score=470.68 Aligned_cols=270 Identities=23% Similarity=0.346 Sum_probs=236.6
Q ss_pred CCcceeehhhhhhccCCEEEEEEEEEEcCCccccCCCceEEEEEEEeCCCCCCCeEEEEecCCCCCCCCCCCCCCEEEEe
Q 012401 6 NQGGIVRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILLK 85 (464)
Q Consensus 6 ~~y~y~~i~d~~~~~~~~vnviGVVvd~~~P~~trG~D~~~tl~I~D~S~~~~gl~v~iF~~~~~~LP~v~~~GDII~l~ 85 (464)
++|+|++|+++. .++.|||||||+|+++|++|+|+||+|||+|+|+|. +||+|+||++++++||.+.++||||+||
T Consensus 2 ~~y~y~~l~~l~--~~~~vnvigVV~~~~~p~~s~G~d~~~tl~I~D~S~--~gl~v~iF~~~~~~LP~v~~~GDII~l~ 77 (294)
T 1xjv_A 2 TNYIYTPLNQLK--GGTIVNVYGVVKFFKPPYLSKGTDYCSVVTIVDQTN--VKLTCLLFSGNYEALPIIYKNGDIVRFH 77 (294)
T ss_dssp CCCCCCCGGGCC--SSEEEEEEEEEEEEEEEEECSSSSEEEEEEEECTTC--CEEEEEEEESSGGGSCCCCSTTCEEEEE
T ss_pred CcceEEEHHHhh--CCCeeEEEEEEEEcCCCccCCCCeEEEEEEEEcCCC--CCEEEEEECCChHHCCCCCCCCCEEEEE
Confidence 579999999884 688999999999999999999999999999999997 4699999999999999998899999999
Q ss_pred eEEEEEEcCeeEEEeccCccEEEEEeCCCCCCCCccccCCCCCCCCHHHHHHHHHHHHhhhcCcccCCCccccccccccc
Q 012401 86 NVMIKKHQAELSAVFYKDSSSFALFDGNSGSNLLPYQSSPQRFEITEAEERRINVLRQWCVGFEFSSGSNDYLLSLKDIS 165 (464)
Q Consensus 86 rvkv~~~~g~~~~~~~~~~ss~~lf~~~~~~~~~Py~~s~~~~~~~~~e~~~v~~Lr~W~~~~~~~~~~~~f~~~Lkdi~ 165 (464)
|++|+.|+|+++++++.++ +|++|+|..+.++.|+++++. |+++++|++++..||+|+.++..... +| ++|+||+
T Consensus 78 ~vki~~~~g~~~~v~~~~~-s~~~f~g~~~~~~~p~~~~~~-~~~~~~e~~~~~~Lr~w~~~~~~~~~--~~-~~L~di~ 152 (294)
T 1xjv_A 78 RLKIQVYKKETQGITSSGF-ASLTFEGTLGAPIIPRTSSKY-FNFTTEDHKMVEALRVWASTHMSPSW--TL-LKLCDVQ 152 (294)
T ss_dssp EEEEEEETTEEEEEEEEEE-EEEEECCSTTCCCCCBCSCSS-CCCCHHHHHHHHHHHHHHHHHCC-----CC-CCGGGCC
T ss_pred EEEEEEECCeEEEEccCCe-EEEEECCCCCCCcCCcccCCC-cCCCHHHHHHHHHHHHHHHhccCCCC--ce-eEHHHcc
Confidence 9999999999999998774 455899998888899776655 99999999999999999987765433 57 8999999
Q ss_pred CCceEeeEEEEEEeeeeCCCCeEEEEEEcCCCCCCCCCCCCCCcccCCCCCCcccCCCCCccccccCC-Ccc-eEEEEEe
Q 012401 166 EHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFF-PVG-TVLRVST 243 (464)
Q Consensus 166 ~~~f~Dlv~qVv~v~~~~~~~~~~L~VwDgT~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~p-~~G-~vl~V~~ 243 (464)
+++||||+||||+++ ..++++++|||||||+||+++++...++++.+++++. | +.| ++++|++
T Consensus 153 ~~~f~DLv~qVv~v~-~~~~~~~~LyVwDgT~~~~~~~~~~~~~~~~~gd~~~--------------~~~~~~lt~~V~~ 217 (294)
T 1xjv_A 153 PMQYFDLTCQLLGKA-EVDGASFLLKVWDGTRTPFPSWRVLIQDLVLEGDLSH--------------IHRLQNLTIDILV 217 (294)
T ss_dssp SSCEEEEEEEEEEEE-ECSSSEEEEEEECSSCCSSCBCCCCCCSSCCEECHHH--------------HHHHGGGSEEEEE
T ss_pred cCCeeeEEEEEEEEE-ecCCCeEEEEEECCCCCCCCccccccccccccCcccc--------------cccccCeeEEEEE
Confidence 999999999999999 5578999999999999999997776655444333321 2 246 8999999
Q ss_pred cccchhhhccCCCCCcEEEEeCcEEEEe--------CcEEEEEEecC----cceEEcCCCChhHHHHHH
Q 012401 244 DRSYENFGRYFTATGKWVRIRNMSCQVS--------SGMWHGLLQSS----SKIRLFSDNDNVVWDYMR 300 (464)
Q Consensus 244 ~~~~~~~~~~~~k~G~wV~l~Nv~~k~~--------~g~leG~l~~~----ski~~l~~~d~~v~~r~r 300 (464)
|++|+.+++ .+|+||||+|+||++|+. +|.|||.||++ +||++|+++++.+.++++
T Consensus 218 ~d~h~~~~~-~lk~Gd~V~l~Nv~~k~~~~~~~~~~~~~le~~lh~~~~~~~~i~~l~~~~~~~~~~~~ 285 (294)
T 1xjv_A 218 YDNHVHVAR-SLKVGSFLRIYSLHTKLQSMNSENQTMLSLEFHLHGGTSYGRGIRVLPESNSDVDQLKK 285 (294)
T ss_dssp ETTHHHHHH-HCCTTCEEEEEEEEEEEEEECTTSCEEEEEEEEECSSCGGGCEEEEECTTSHHHHHHHH
T ss_pred EcchhHHHh-cCCCCcEEEEeeeEEEecccccccCCCcceEEEEecCcccCcEeEEecCCCCCHHHHHH
Confidence 999998765 899999999999999995 78999999997 689999999998887765
No 3
>4hik_A Protection of telomeres protein 1; specificity, plasticity, promiscuity, OB-fold, ssDNA binding stranded telomeric DNA; HET: DNA; 1.64A {Schizosaccharomyces pombe} PDB: 4hid_A* 4him_A* 4hio_A* 4hj5_A* 4hj7_A* 4hj8_A* 4hj9_A* 4hja_A*
Probab=100.00 E-value=2.9e-33 Score=246.37 Aligned_cols=127 Identities=17% Similarity=0.287 Sum_probs=108.4
Q ss_pred cccccccccccCCceEeeEEEEEEeeeeCCCCeEEEEEEcCCCCCCCCCCCCCCcccCCCCCCcccCCCCCccccccCC-
Q 012401 155 NDYLLSLKDISEHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFF- 233 (464)
Q Consensus 155 ~~f~~~Lkdi~~~~f~Dlv~qVv~v~~~~~~~~~~L~VwDgT~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~p- 233 (464)
.+| ++|+||++++||||+||||+++++ + ++++|||||||+||.++ +....+ ....||
T Consensus 3 ~kf-~llkdv~~~~F~Dl~~qVv~~~~~-~-~~~~LyVTDYT~N~~~~-~~~~~~------------------~~~~W~G 60 (143)
T 4hik_A 3 DSF-SLLSQITPHQRCSFYAQVIKTWYS-D-KNFTLYVTDYTENELFF-PMSPYT------------------SSSRWRG 60 (143)
T ss_dssp -CC-CCGGGCCSSCEEEEEEEEEEEEEC-S-SCEEEEEECSCCCTTSC-CBCTTC------------------TTCSCCC
T ss_pred chh-hhHHhCCCCCeEEEEEEEEEEEcC-C-CeEEEEEecCCCCCccc-ccccCC------------------CCccccC
Confidence 478 999999999999999999999954 4 99999999999999988 332211 013799
Q ss_pred Ccc-eEEEEEecccchhhhccCCCCCcEEEEeCcEEEE-eCcEEEEEEecCc----c--eEEcCCCCh---hHHHHHH-H
Q 012401 234 PVG-TVLRVSTDRSYENFGRYFTATGKWVRIRNMSCQV-SSGMWHGLLQSSS----K--IRLFSDNDN---VVWDYMR-F 301 (464)
Q Consensus 234 ~~G-~vl~V~~~~~~~~~~~~~~k~G~wV~l~Nv~~k~-~~g~leG~l~~~s----k--i~~l~~~d~---~v~~r~r-y 301 (464)
|+| |+|||+||++|+.++++++++|+||+|+||++|+ .+|.|||+||+++ | |..|+++|+ ++++|++ |
T Consensus 61 p~G~~tlqVtlwd~ha~~ar~~lk~Gd~v~L~Nv~iK~~~~g~LEG~l~~dr~~~~ki~v~~ld~~~~~lk~ll~Rk~~Y 140 (143)
T 4hik_A 61 PFGRFSIRCILWDEHDFYCRNYIKEGDYVVMKNVRTKIDHLGYLECILHGDSAKRYNMSIEKVDSEEPELNEIKSRKRLY 140 (143)
T ss_dssp CCBSCCEEEEECHHHHHHHTTTCCTTCEEEEEEEEEEECTTSCEEEEECCCTTCCSCCEEEEECTTCGGGHHHHHHHGGG
T ss_pred CCCcEEEEEEEECcHHHHHHhhCCCCCEEEEEeEEEeecCCceEEEEEcCCCCCCCcceEEEcCCCCHHHHHHHHHHHHH
Confidence 999 9999999999999999999999999999999999 5789999999985 4 456888777 6788888 8
Q ss_pred HH
Q 012401 302 RE 303 (464)
Q Consensus 302 ~~ 303 (464)
|+
T Consensus 141 ~~ 142 (143)
T 4hik_A 141 VQ 142 (143)
T ss_dssp C-
T ss_pred hh
Confidence 75
No 4
>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} SCOP: b.40.4.3 PDB: 1qzh_A
Probab=100.00 E-value=1e-32 Score=252.14 Aligned_cols=141 Identities=20% Similarity=0.277 Sum_probs=123.2
Q ss_pred Ccceeehhhhhh--ccCCEEEEEEEEEEcCCcccc-CCC-ceEEEEEEEeCCCC--CCCeEEEEecCCCCCCCCCCCCCC
Q 012401 7 QGGIVRIKELAM--HVKHKVNLLGVVLEFSIPRKS-QGT-DYVCVLKIVDDSQQ--SPELLVNIFTSSIDQLPRVLSPRD 80 (464)
Q Consensus 7 ~y~y~~i~d~~~--~~~~~vnviGVVvd~~~P~~t-rG~-D~~~tl~I~D~S~~--~~gl~v~iF~~~~~~LP~v~~~GD 80 (464)
.++|++|++++. ..++.||+||||+|+++|++| +|+ ||+|||+|+|+|+. +.||+|+||++++++||.|.++||
T Consensus 26 ~~~~~~~r~~l~~~~~g~~VNviGVVvd~~~P~~S~rGtkD~~~TltI~D~S~~~~~~gL~v~iF~~~~e~LP~V~~~GD 105 (187)
T 1qzg_A 26 ELTFQSIRSSQELQKKNTIVNLFGIVKDFTPSRQSLHGTKDWVTTVYLWDPTCDTSSIGLQIHLFSKQGNDLPVIKQVGQ 105 (187)
T ss_dssp TEEEECHHHHTSCCSSCEEEEEEEEEEEEEEEEECSSTTCCEEEEEEEECTTSCTTSCCEEEEEEESSSSCSCCCCSTTC
T ss_pred ceeEEEHHHHHhhccCCCEEEEEEEEEEccCceecCCCCccEEEEEEEEeCCCCCCCCceEEEEECCChhhCCCCCCCCC
Confidence 578999999987 468889999999999999999 999 99999999999975 569999999999999999999999
Q ss_pred EEEEeeEEEEEEcCeeEEEeccCccEEEEEeCCCCCCCCcccc--CCCCCCCCHHHHHHHHHHHHhhhcC
Q 012401 81 LILLKNVMIKKHQAELSAVFYKDSSSFALFDGNSGSNLLPYQS--SPQRFEITEAEERRINVLRQWCVGF 148 (464)
Q Consensus 81 II~l~rvkv~~~~g~~~~~~~~~~ss~~lf~~~~~~~~~Py~~--s~~~~~~~~~e~~~v~~Lr~W~~~~ 148 (464)
||+|||+|||.|+|++++++++. ++|++|++..+.+..|++. ++.++.++++|++|+..|++||..+
T Consensus 106 IIlL~rvkiq~~~g~~~~v~~~~-~s~a~f~~~~~~~~~~~~~~~~p~~~~~~~~E~~ya~~L~~~w~~~ 174 (187)
T 1qzg_A 106 PLLLHQITLRSYRDRTQGLSKDQ-FRYALWPDFSSNSKDTLCPQPMPRLMKTGDKEEQFALLLNKIWDEQ 174 (187)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEE-EEEEECCCTTCSCSCCSCCCCSTTBCCCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEEEEECCeEEEEEcCc-eeEEEEeccCCCCCCCCCCccCccCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999877 4799999876544334333 3434899999999999999877643
No 5
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=99.22 E-value=3.4e-09 Score=110.56 Aligned_cols=307 Identities=12% Similarity=0.101 Sum_probs=192.8
Q ss_pred eeehhhhhhccCCEEEEEEEEEEcCCccc---cCCCceEEEEEEEeCCCCCCCeEEEEecCCCCCC-CCCCCCCCEEEEe
Q 012401 10 IVRIKELAMHVKHKVNLLGVVLEFSIPRK---SQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQL-PRVLSPRDLILLK 85 (464)
Q Consensus 10 y~~i~d~~~~~~~~vnviGVVvd~~~P~~---trG~D~~~tl~I~D~S~~~~gl~v~iF~~~~~~L-P~v~~~GDII~l~ 85 (464)
+++|+++.... ....+.|-|+.....+. .+|..-..++.|.|++- .|.+.+|.+..+.+ |.+ ..|+++.+.
T Consensus 3 ~~~I~~L~p~~-~~w~I~~rV~~k~~ir~~~~~~~~g~~~~~~L~De~G---~I~at~~~~~~~~f~~~l-~eG~vy~Is 77 (444)
T 4gop_C 3 IYPIEGLSPYQ-NRWTIKARVTSKSDIRHWSNQRGEGKLFSVNLLDDSG---EIKATGFNDAVDRFYPLL-QENHVYLIS 77 (444)
T ss_dssp CCCSTTCCTTC-CSCEEEEECCEECCCEEEECSSCEEEEEEEEEECSSC---EEEEEEETHHHHHHTTTC-CTTCEEEEE
T ss_pred ceeHHHCCCCC-cceEEEEEEEEccCcceecCCCCCceEEEEEEEcCCC---EEEEEEeHHHHHHHHHhe-ecCCEEEEc
Confidence 67899987433 25899999998766542 24445678999999753 49999998655555 556 799999999
Q ss_pred eEEEEEEcCeeEE-------EeccCccEEEEEeCCCCCCCCccccCCCCCCCCHHHHHHHHHHHHhhhcCcccCCCcccc
Q 012401 86 NVMIKKHQAELSA-------VFYKDSSSFALFDGNSGSNLLPYQSSPQRFEITEAEERRINVLRQWCVGFEFSSGSNDYL 158 (464)
Q Consensus 86 rvkv~~~~g~~~~-------~~~~~~ss~~lf~~~~~~~~~Py~~s~~~~~~~~~e~~~v~~Lr~W~~~~~~~~~~~~f~ 158 (464)
+.+|+..+++... .++.. |...... +..-.| ...| .|
T Consensus 78 ~~~V~~~~~~y~~~~~~~ei~~~~~-T~V~~~~---d~~~iP----~~~~---------------------------~f- 121 (444)
T 4gop_C 78 KARVNIAKKQFSNLQNEYEITFENS-TEIEECT---DATDVP----EVKY---------------------------EF- 121 (444)
T ss_dssp SCEEEECCGGGCSCCCSEEEEECTT-CEEEECS---CCSSSC----CCCC---------------------------CB-
T ss_pred CCEEEecCCccccCCCCEEEEEcCC-cEEEEcc---CcccCc----ceee---------------------------cc-
Confidence 9999988765332 22211 2222111 111112 0012 24
Q ss_pred cccccc---cCCceEeeEEEEEEeeeeCC-------C---CeEEEEEEcCCCCCCCCCCCCCCcccCCCCCCcccCCCCC
Q 012401 159 LSLKDI---SEHRYFDLVCKVFHVSYDDS-------K---GLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLD 225 (464)
Q Consensus 159 ~~Lkdi---~~~~f~Dlv~qVv~v~~~~~-------~---~~~~L~VwDgT~~~~~~~~~~~~~~~~~~~p~~~~~~~l~ 225 (464)
..|.|| ..+..+|+++.|+.+. +.. + .+..+.+-|.
T Consensus 122 ~~i~~i~~~~~~~~vDViG~V~~v~-~~~~i~~k~~g~~~~kr~i~L~D~------------------------------ 170 (444)
T 4gop_C 122 VRINELESVEANQQCDVIGILDSYG-ELSEIVSKASQRPVQKRELTLVDQ------------------------------ 170 (444)
T ss_dssp CCGGGGGGSCSSCCCBEEEEEEEEC-CCEEECCTTTCSCEEEEEEEEECT------------------------------
T ss_pred cCHHHHhccCCCCceEEEEEEEEcC-CcEEEEEccCCceeeEEEEEEEeC------------------------------
Confidence 445555 4688999999999887 311 0 0111111121
Q ss_pred ccccccCCCcceEEEEEecccchhhhcc--CCCCCcEEEEeCcEEEEeCcEEEEEEecCcceEEcCCCChhHHHHHH-HH
Q 012401 226 LETLRNFFPVGTVLRVSTDRSYENFGRY--FTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDNDNVVWDYMR-FR 302 (464)
Q Consensus 226 ~~~~~~~p~~G~vl~V~~~~~~~~~~~~--~~k~G~wV~l~Nv~~k~~~g~leG~l~~~ski~~l~~~d~~v~~r~r-y~ 302 (464)
-|..+++++|+.+|..... ....|..|.|++++++..+|. .......|+| .++++-|++.+.+. |.
T Consensus 171 ---------sg~~i~~tLWg~~A~~f~~~~~~~~~~VV~i~~~kV~~f~G~-~ls~~~~s~i-~inPdipea~~l~~w~~ 239 (444)
T 4gop_C 171 ---------GNRSVKLTLWGKTAETFPTNAGVDEKPVLAFKGVKVGDFGGR-SLSMFSSSTM-LINPDITESHVLRGWYD 239 (444)
T ss_dssp ---------TCBEEEEEEEHHHHHTSTTSTTSSSCCEEEEESCEEECTTSS-EEECCTTCEE-EESCSSHHHHHHHHHHH
T ss_pred ---------CCCEEEEEEEhhhhhhhhhhhccCCCCEEEEEeEEEeecCCe-EEeccccceE-EECCCCHHHHHHHHHHH
Confidence 1567899999998874221 267899999999999987775 4455566777 45667778877776 75
Q ss_pred HHHhCCCCCCCCccCCCCC------CCcccccCCCccccHHHHhhC-C---CCCceeEEEEEEEeecCCCccc-------
Q 012401 303 ERISGGHGHMPIWTDPSSQ------FLTEVDWVNVASVTLMKIATQ-L---QGNVRCCCIVRVVSIHPFQAEH------- 365 (464)
Q Consensus 303 ~r~~~~~~~~~~~~~~~~~------~~t~~~~~~~p~ttL~dIL~~-p---~v~~kfr~~VRVV~~~P~~~ed------- 365 (464)
..-+.. . . .+..+.. ..........+..||.||++. + ..+..|.+.+.|+.+-+.+.-=
T Consensus 240 ~~g~~~-~-~--~~~~~~~~~~~~~~~~~~~~~~~~~kti~~i~~~~~g~~~~~~~~~v~atI~~i~~~~~~Y~aC~~~~ 315 (444)
T 4gop_C 240 NDGAHA-Q-F--QPYTNGGVGGGAMGGGGAGANMAERRTIVQVKDENLGMSEKPDYFNVRATVVYIKQENLYYTACASEG 315 (444)
T ss_dssp HHTTTS-C-C--BCCCCCC---------CTTCCSSEECCHHHHHHTTTTSSSSCEEEEEEEEEEEECCTTCEEEECCSTT
T ss_pred cCCCCc-c-c--ccccccccccccccccccccccccceeHHHHhhhccCCCCCCcEEEEEEEEEEEcCCceEEccCCccc
Confidence 542211 0 0 0110000 011011123567899999963 2 2345688888888876533210
Q ss_pred -------------ccc------CCCCeEEEEEEEEeCCCceEEEEEeccccccccCC
Q 012401 366 -------------YSS------PNGSSEYTMKLTLEDPTARIHALLCGKEWVKFFGG 403 (464)
Q Consensus 366 -------------f~~------~~~~w~~rf~L~lED~t~ri~~~v~~~da~~f~~~ 403 (464)
.|. +...|.|++.+.|.|.|+.+++.++++.|+.+||.
T Consensus 316 C~kkv~~~~~g~~~C~~C~~~~~~~~~ry~l~~~v~D~Tg~~~~~~F~~~a~~llG~ 372 (444)
T 4gop_C 316 CNKKVNLDHENNWRCEKCDRSYATPEYRYILSTNVADATGQMWLSGFNEDATQLIGM 372 (444)
T ss_dssp CCCBEEECTTSCEEETTTTEEESSCEEEECEEEEEEETTEEEEEEECHHHHHHHTTS
T ss_pred CCCccccCCCccEECCCCCCcCccccEEEEEEEEEEeCCCCEEEEEehHHHHHHcCC
Confidence 111 12367888999999999999999999999999963
No 6
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=98.58 E-value=2.3e-06 Score=81.95 Aligned_cols=224 Identities=18% Similarity=0.202 Sum_probs=138.5
Q ss_pred cceeehhhhhhccCCEEEEEEEEEEcCCccc---cCCCceEEEEEEEeCCCCCCCeEEEEecCCCCCC-CCCCCCCCEEE
Q 012401 8 GGIVRIKELAMHVKHKVNLLGVVLEFSIPRK---SQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQL-PRVLSPRDLIL 83 (464)
Q Consensus 8 y~y~~i~d~~~~~~~~vnviGVVvd~~~P~~---trG~D~~~tl~I~D~S~~~~gl~v~iF~~~~~~L-P~v~~~GDII~ 83 (464)
-.|++|+++.... ...++.|-|+....++. .+|..-..++.|.|++- .|.+.+|.+..+.+ |.+ ..|+++.
T Consensus 6 ~~~~~I~~L~p~~-~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~De~G---~I~at~~~~~~~~~~~~l-~~G~vy~ 80 (246)
T 1jmc_A 6 SKVVPIASLTPYQ-SKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESG---EIRATAFNEQVDKFFPLI-EVNKVYY 80 (246)
T ss_dssp -CBCCGGGCCTTC-CCCEEEEEEEEECCCEEEECSSCEEEEEEEEEECSSC---EEEEEEEHHHHHHHGGGC-CTTCEEE
T ss_pred cceEEHHHCCCCC-CceEEEEEEEEecccceeeCCCCCceEEEEEEECCCC---eEEEEEChHHHHHhhhhc-ccCCEEE
Confidence 4688999997333 25899999999877653 24555678899999875 39999998654444 446 7999999
Q ss_pred EeeEEEEEEcCe-------eEEEeccCccEEEEEeCCCCCCCCccccCCCCCCCCHHHHHHHHHHHHhhhcCcccCCCcc
Q 012401 84 LKNVMIKKHQAE-------LSAVFYKDSSSFALFDGNSGSNLLPYQSSPQRFEITEAEERRINVLRQWCVGFEFSSGSND 156 (464)
Q Consensus 84 l~rvkv~~~~g~-------~~~~~~~~~ss~~lf~~~~~~~~~Py~~s~~~~~~~~~e~~~v~~Lr~W~~~~~~~~~~~~ 156 (464)
+.+++++..+++ ....++.. |.....+..+ . .| ...|.+. +
T Consensus 81 i~~~~v~~~~~~y~~~~~~~ei~~~~~-T~I~~~~~~~--~-iP----~~~~~f~------------------------~ 128 (246)
T 1jmc_A 81 FSKGTLKIANKQFTAVKNDYEMTFNNE-TSVMPCEDDH--H-LP----TVQFDFT------------------------G 128 (246)
T ss_dssp EECCEEEECCGGGCCCCCSEEEECCTT-CEEEECCSCS--C-CC----CCCCCBC------------------------C
T ss_pred ECCCEEEEcccCcccCCCCEEEEEcCC-cEEEEccCcc--c-CC----cceeeeE------------------------E
Confidence 999999987543 33333322 2222111110 0 12 1112221 1
Q ss_pred cccccccccCCceEeeEEEEEEeeeeCCCCeEEEEEEcCCCCCCCCCCCCCCcccCCCCCCcccCCCCCccccccCCCcc
Q 012401 157 YLLSLKDISEHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPVG 236 (464)
Q Consensus 157 f~~~Lkdi~~~~f~Dlv~qVv~v~~~~~~~~~~L~VwDgT~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~p~~G 236 (464)
| ..|.++..+.++|+++.|+.+. +.. .+.- -.||++..... ..+.| .-|
T Consensus 129 i-~~i~~~~~~~~vDViG~V~~v~-~~~--~~~~-k~~g~~~~~r~--~~l~D------------------------~sg 177 (246)
T 1jmc_A 129 I-DDLENKSKDSLVDIIGICKSYE-DAT--KITV-RSNNREVAKRN--IYLMD------------------------TSG 177 (246)
T ss_dssp G-GGGGGSCTTCEEEEEEEEEEEC-CCE--EEEE-TTTTEEEEEEE--EEEEC------------------------TTC
T ss_pred H-HHHhcccCCCceeEEEEEEEec-CeE--EEEE-ecCCCccEEEE--EEEEC------------------------CCC
Confidence 2 3344445788999999999887 311 1000 00222111000 00000 015
Q ss_pred eEEEEEecccchhhhccCCCCCcEEEEeCcEEEEeCcEEEEEEecCcceEEcCCCChhHHHHHH-HHH
Q 012401 237 TVLRVSTDRSYENFGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDNDNVVWDYMR-FRE 303 (464)
Q Consensus 237 ~vl~V~~~~~~~~~~~~~~k~G~wV~l~Nv~~k~~~g~leG~l~~~ski~~l~~~d~~v~~r~r-y~~ 303 (464)
.++++++|..+|.. -..+.|..|.|++++++..+| .+......|+|. ++++-+++.+.+. |..
T Consensus 178 ~~i~~tLWg~~a~~--~~~~~~~vv~i~~~~v~~f~g-~~ls~~~~s~i~-inpd~pe~~~l~~w~~~ 241 (246)
T 1jmc_A 178 KVVTATLWGEDADK--FDGSRQPVLAIKGARVSDFGG-RSLSVLSSSTII-ANPDIPEAYKLRGWFDA 241 (246)
T ss_dssp CEEEEEEEHHHHHH--CCCTTCCEEEEEEEEEECTTS-SEEECCSSCEEE-SSCCSHHHHHHHHHHHH
T ss_pred CEEEEEEEchhhhh--cccCCCCEEEEEEEEEEecCC-eEEEecCcceEE-ECCCCHHHHHHHHHHHh
Confidence 68899999998874 236889999999999988765 555666678884 7778888877776 654
No 7
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=98.41 E-value=1e-06 Score=74.57 Aligned_cols=93 Identities=24% Similarity=0.343 Sum_probs=77.1
Q ss_pred CCCcceeehhhhhhccCCEEEEEEEEEEcCCcc--ccC-CC-ceEEEEEEEeCCCCCCCeEEEEecCCCCCCCCCCCCCC
Q 012401 5 RNQGGIVRIKELAMHVKHKVNLLGVVLEFSIPR--KSQ-GT-DYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRD 80 (464)
Q Consensus 5 ~~~y~y~~i~d~~~~~~~~vnviGVVvd~~~P~--~tr-G~-D~~~tl~I~D~S~~~~gl~v~iF~~~~~~LP~v~~~GD 80 (464)
..+|.+++|+++. .|+.++++|+|++.+.++ .++ |+ .-+.+++|.|.|- .|.+.+|.+..+.+..+ ..||
T Consensus 2 ~~~~~~~~I~~L~--~g~~v~i~~~V~~~~~~~~~~~k~G~~~~~~~~~l~D~TG---~I~~t~w~~~~~~~~~l-~~G~ 75 (115)
T 2k50_A 2 KPEHRMDTISKLE--EGAETPVTGRVMKISSPRTFTTRKGREGKLANVIIADDTG---ELRAVFWTENIKLLKKF-REGD 75 (115)
T ss_dssp CCTTCCCCTTTCC--TTCEEEEEEEEEEECCCEECCCTTSSCCEEEEEEEEETTE---EEEEEEETTGGGGGGTC-CTTS
T ss_pred ccccceEEHHHCC--CCCEeEEEEEEEECCCceEEEcCCCCEEEEEEEEEEeCCC---eEEEEEeCchhhhhhcC-CCCC
Confidence 3578899999997 788999999999998776 454 43 5789999999875 39999998765666667 6899
Q ss_pred EEEEeeEEEEE-EcCeeEEEeccC
Q 012401 81 LILLKNVMIKK-HQAELSAVFYKD 103 (464)
Q Consensus 81 II~l~rvkv~~-~~g~~~~~~~~~ 103 (464)
+|.+.+..++. |+|++++..+..
T Consensus 76 vv~i~g~~v~~~f~g~~qL~~~~~ 99 (115)
T 2k50_A 76 VIRIKDVNIRGGFGGRKEAHLMPR 99 (115)
T ss_dssp EEEEEEEEECCCSSSSCEEEECTT
T ss_pred EEEEEeeEEccccCCeEEEEECCC
Confidence 99999999986 999999888754
No 8
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=98.24 E-value=5.7e-06 Score=69.09 Aligned_cols=88 Identities=18% Similarity=0.302 Sum_probs=71.7
Q ss_pred cceeehhhhhhccCCE-EEEEEEEEEcCCccccC-CCc-eEEEEEEEeCCCCCCCeEEEEecCCCCCCCCCCCCCCEEEE
Q 012401 8 GGIVRIKELAMHVKHK-VNLLGVVLEFSIPRKSQ-GTD-YVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILL 84 (464)
Q Consensus 8 y~y~~i~d~~~~~~~~-vnviGVVvd~~~P~~tr-G~D-~~~tl~I~D~S~~~~gl~v~iF~~~~~~LP~v~~~GDII~l 84 (464)
|.++.|+|+. ++.. ||++|.|++...|+.++ |+. ..+++.|.|+|= .|.+.++.+. + ..||+|++
T Consensus 1 ~~~~kI~dl~--pg~~~v~v~~~V~~~~~~~~~k~G~~~~v~~~~l~DeTG---~I~~tlW~~~------l-~~Gdvv~i 68 (106)
T 2k75_A 1 SDLVKIRDVS--LSTPYVSVIGKITGIHKKEYESDGTTKSVYQGYIEDDTA---RIRISSFGKQ------L-QDSDVVRI 68 (106)
T ss_dssp CCBCCSTTCC--TTCSEEEEEEEEEEEEEEEEEETTEEEEEEEEEEECSSC---EEEEEEESSC------C-CTTEEEEE
T ss_pred CCcEEHHHcC--CCCceEEEEEEEEEccccccccCCCeeEEEEEEEEcCCC---eEEEEEEcCc------c-CCCCEEEE
Confidence 6788999997 5554 99999999999886444 543 588999999875 3999999864 5 78999999
Q ss_pred eeEEEEEEcCeeEEEeccCccEEE
Q 012401 85 KNVMIKKHQAELSAVFYKDSSSFA 108 (464)
Q Consensus 85 ~rvkv~~~~g~~~~~~~~~~ss~~ 108 (464)
++.+++.|+|++++..++. +...
T Consensus 69 ~ng~v~~~~g~~~L~v~~~-~~I~ 91 (106)
T 2k75_A 69 DNARVAQFNGYLSLSVGDS-SRIE 91 (106)
T ss_dssp EEEEEEEETTEEEEEECTT-SEEE
T ss_pred EeeEEeEECCEEEEEECCc-EEEE
Confidence 9999999999999888754 4443
No 9
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=98.06 E-value=4.4e-05 Score=64.90 Aligned_cols=89 Identities=13% Similarity=0.201 Sum_probs=70.6
Q ss_pred eeehhhhhhccCC-EEEEEEEEEEcCCcc--ccC-CCceEEEEEEEeCCCCCCCeEEEEecCCCCCCCCCCCCCCEEEEe
Q 012401 10 IVRIKELAMHVKH-KVNLLGVVLEFSIPR--KSQ-GTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILLK 85 (464)
Q Consensus 10 y~~i~d~~~~~~~-~vnviGVVvd~~~P~--~tr-G~D~~~tl~I~D~S~~~~gl~v~iF~~~~~~LP~v~~~GDII~l~ 85 (464)
|+.|+++. .+. .++++|+|++...++ .++ |+--..++.|.|.|=. |.++++.+..+ .+ ..||||.++
T Consensus 2 f~~I~dL~--~~~~~v~~~~~V~~~~~~~~~~~k~G~~~~~~~~l~D~TG~---I~~tlW~~~~~---~~-~~G~vv~i~ 72 (119)
T 1o7i_A 2 EEKVGNLK--PNMESVNVTVRVLEASEARQIQTKNGVRTISEAIVGDETGR---VKLTLWGKHAG---SI-KEGQVVKIE 72 (119)
T ss_dssp BCCGGGCC--TTCSSEEEEEEEEEECCCEEECCTTCCEEEEEEEEEETTEE---EEEEEEGGGTT---CC-CTTCEEEEE
T ss_pred cEEHHHCc--CCCCcEEEEEEEEECCCCeeEEecCCCEEEEEEEEEeCCCE---EEEEEECChhh---cC-CCCCEEEEE
Confidence 67789987 454 699999999998766 444 4347899999999752 99999986543 34 689999999
Q ss_pred eEEEEEEcCeeEEEeccCccEEE
Q 012401 86 NVMIKKHQAELSAVFYKDSSSFA 108 (464)
Q Consensus 86 rvkv~~~~g~~~~~~~~~~ss~~ 108 (464)
+.+++.|+|++++..++. +...
T Consensus 73 ~g~v~~~~g~~qL~i~~~-~~i~ 94 (119)
T 1o7i_A 73 NAWTTAFKGQVQLNAGSK-TKIA 94 (119)
T ss_dssp EEEEEEETTEEEEEECTT-CEEE
T ss_pred eEEEEEeCCEEEEEECCC-EEEE
Confidence 999999999999887744 4444
No 10
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=98.01 E-value=2.3e-05 Score=74.90 Aligned_cols=91 Identities=13% Similarity=0.201 Sum_probs=71.8
Q ss_pred CCcceeehhhhhhc-cCCEEEEEEEEEEcCCccc--c--CCCc-eEEEEEEEeCCCCCCCeEEEEecCCCCCCCCCCCCC
Q 012401 6 NQGGIVRIKELAMH-VKHKVNLLGVVLEFSIPRK--S--QGTD-YVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPR 79 (464)
Q Consensus 6 ~~y~y~~i~d~~~~-~~~~vnviGVVvd~~~P~~--t--rG~D-~~~tl~I~D~S~~~~gl~v~iF~~~~~~LP~v~~~G 79 (464)
..|.|++|+++.+. .+..|+|+|+|++++++.. + .|++ .+..|+|.|.|-. .|.|.++.+..+.++. ..|
T Consensus 122 ~~~~f~~i~~i~~~~~~~~vDViG~V~~v~~~~~~~~k~~g~~~~~r~~~l~D~sg~--~i~~tLWg~~a~~~~~--~~~ 197 (246)
T 1jmc_A 122 VQFDFTGIDDLENKSKDSLVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDTSGK--VVTATLWGEDADKFDG--SRQ 197 (246)
T ss_dssp CCCCBCCGGGGGGSCTTCEEEEEEEEEEECCCEEEEETTTTEEEEEEEEEEECTTCC--EEEEEEEHHHHHHCCC--TTC
T ss_pred ceeeeEEHHHHhcccCCCceeEEEEEEEecCeEEEEEecCCCccEEEEEEEECCCCC--EEEEEEEchhhhhccc--CCC
Confidence 45789999999863 5678999999999998754 2 3554 5789999999853 4999999986666663 579
Q ss_pred CEEEEeeEEEEEEcCeeEEEec
Q 012401 80 DLILLKNVMIKKHQAELSAVFY 101 (464)
Q Consensus 80 DII~l~rvkv~~~~g~~~~~~~ 101 (464)
+||.++.++|+.|+| ..+...
T Consensus 198 ~vv~i~~~~v~~f~g-~~ls~~ 218 (246)
T 1jmc_A 198 PVLAIKGARVSDFGG-RSLSVL 218 (246)
T ss_dssp CEEEEEEEEEECTTS-SEEECC
T ss_pred CEEEEEEEEEEecCC-eEEEec
Confidence 999999999999955 555443
No 11
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=97.96 E-value=3.3e-05 Score=80.41 Aligned_cols=91 Identities=15% Similarity=0.279 Sum_probs=71.5
Q ss_pred CCcceeehhhhhhc-cCCEEEEEEEEEEcCCccc--c--CCC-ceEEEEEEEeCCCCCCCeEEEEecCCCCCCCC--CCC
Q 012401 6 NQGGIVRIKELAMH-VKHKVNLLGVVLEFSIPRK--S--QGT-DYVCVLKIVDDSQQSPELLVNIFTSSIDQLPR--VLS 77 (464)
Q Consensus 6 ~~y~y~~i~d~~~~-~~~~vnviGVVvd~~~P~~--t--rG~-D~~~tl~I~D~S~~~~gl~v~iF~~~~~~LP~--v~~ 77 (464)
..|.|++|+++.+. .+..|+|||+|+++++++. + .|+ -.+..|+|.|.|-. .|.|.++.+..+.+.. ...
T Consensus 117 ~~~~f~~i~~i~~~~~~~~vDViG~V~~v~~~~~i~~k~~g~~~~kr~i~L~D~sg~--~i~~tLWg~~A~~f~~~~~~~ 194 (444)
T 4gop_C 117 VKYEFVRINELESVEANQQCDVIGILDSYGELSEIVSKASQRPVQKRELTLVDQGNR--SVKLTLWGKTAETFPTNAGVD 194 (444)
T ss_dssp CCCCBCCGGGGGGSCSSCCCBEEEEEEEECCCEEECCTTTCSCEEEEEEEEECTTCB--EEEEEEEHHHHHTSTTSTTSS
T ss_pred eeecccCHHHHhccCCCCceEEEEEEEEcCCcEEEEEccCCceeeEEEEEEEeCCCC--EEEEEEEhhhhhhhhhhhccC
Confidence 46889999999863 5667999999999998753 2 354 57889999999863 3999999876665552 125
Q ss_pred CCCEEEEeeEEEEEEcCeeEEE
Q 012401 78 PRDLILLKNVMIKKHQAELSAV 99 (464)
Q Consensus 78 ~GDII~l~rvkv~~~~g~~~~~ 99 (464)
.|+||.++.++|+.|+|. .+.
T Consensus 195 ~~~VV~i~~~kV~~f~G~-~ls 215 (444)
T 4gop_C 195 EKPVLAFKGVKVGDFGGR-SLS 215 (444)
T ss_dssp SCCEEEEESCEEECTTSS-EEE
T ss_pred CCCEEEEEeEEEeecCCe-EEe
Confidence 799999999999999996 443
No 12
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=97.69 E-value=0.0004 Score=58.07 Aligned_cols=84 Identities=15% Similarity=0.232 Sum_probs=66.6
Q ss_pred eeehhhhhhccCCEEEEEEEEEEcCCccccCCCceEEEEEEEeCCCCCCCeEEEEecCCCCCCCCCCCCCCEEEEeeEEE
Q 012401 10 IVRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILLKNVMI 89 (464)
Q Consensus 10 y~~i~d~~~~~~~~vnviGVVvd~~~P~~trG~D~~~tl~I~D~S~~~~gl~v~iF~~~~~~LP~v~~~GDII~l~rvkv 89 (464)
++.|+|+... +..||++|.|++...|+ .|+.+ ..+.|-|+|= .|++.++.+. ..+.+ ..||+|+|+++++
T Consensus 5 ~~kI~dl~~~-~~~v~v~~~V~~~~~~~--~~~~~-~~~~l~DeTG---~I~~t~W~~~--~~~~~-~~G~~V~i~n~~v 74 (109)
T 2kbn_A 5 LTKIVDIVEN-GQWANLKAKVIQLWENT--HESIS-QVGLLGDETG---IIKFTIWKNA--ELPLL-EQGESYLLRSVVV 74 (109)
T ss_dssp BCCTTTCCST-TCEEEEEEEEEEEEECC--CSSEE-EEEEEECTTC---CEEEEEEGGG--CCCCC-CTTCEEEEEEEEE
T ss_pred ceEHHHCCCC-CCcEEEEEEEEEeEcCC--CCeEE-EEEEEECCCC---eEEEEEECcc--ccccc-CCCCEEEEEEEEE
Confidence 5568888632 56799999999998753 23444 4588999874 3999999843 57788 6899999999999
Q ss_pred EEEcCeeEEEeccC
Q 012401 90 KKHQAELSAVFYKD 103 (464)
Q Consensus 90 ~~~~g~~~~~~~~~ 103 (464)
+.|+|++++..++.
T Consensus 75 ~~~~G~~~L~v~~~ 88 (109)
T 2kbn_A 75 GEYNDRFQVQVNKN 88 (109)
T ss_dssp EEETTEEEEEECSS
T ss_pred EEECCEEEEEECCc
Confidence 99999999888744
No 13
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=97.60 E-value=0.00021 Score=59.35 Aligned_cols=84 Identities=15% Similarity=0.203 Sum_probs=65.9
Q ss_pred ceeehhhhhhccCCEEEEEEEEEEcCCcccc---CCC-ceEEEEEEEeCCCCCCCeEEEEecCCCCCCCCCCCCCCEEEE
Q 012401 9 GIVRIKELAMHVKHKVNLLGVVLEFSIPRKS---QGT-DYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILL 84 (464)
Q Consensus 9 ~y~~i~d~~~~~~~~vnviGVVvd~~~P~~t---rG~-D~~~tl~I~D~S~~~~gl~v~iF~~~~~~LP~v~~~GDII~l 84 (464)
.|.+|+++. ++..+|++|+|++.++++.- .|+ -...+++|.|.|- .+.+.+|.+..+ + .+ .+||+|.+
T Consensus 4 ~~~~I~dL~--~~~~v~v~g~V~~~~~~r~~~~~~G~~~~v~~~~l~D~TG---~IrvtlW~~~a~-~-~l-~~Gdvv~i 75 (105)
T 3dm3_A 4 DTYNIGELS--PGMTATFEGEVISALPIKEFKRADGSIGKLKSFIVRDETG---SIRVTLWDNLTD-I-DV-GRGDYVRV 75 (105)
T ss_dssp CEECGGGCC--SSEEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEETTE---EEEEEEEGGGGG-S-CC-CTTCEEEE
T ss_pred cceEHHHCC--CCCeEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCC---cEEEEEECcccc-c-cc-CCCCEEEE
Confidence 578999998 56789999999999987542 354 4678999999865 399999986443 4 55 79999999
Q ss_pred eeEEEEEEc-CeeEEEec
Q 012401 85 KNVMIKKHQ-AELSAVFY 101 (464)
Q Consensus 85 ~rvkv~~~~-g~~~~~~~ 101 (464)
+..++..+ |.+.+...
T Consensus 76 -~g~vk~~~~g~~eL~~g 92 (105)
T 3dm3_A 76 -RGYIREGYYGGLECTAN 92 (105)
T ss_dssp -EEEEEECTTSSEEEEEE
T ss_pred -EEEEEEccCCCEEEEeC
Confidence 89999884 47776665
No 14
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=97.58 E-value=0.00086 Score=55.72 Aligned_cols=87 Identities=20% Similarity=0.234 Sum_probs=66.4
Q ss_pred cccccccCCce-EeeEEEEEEeeeeCC---CC----eEEEEEEcCCCCCCCCCCCCCCcccCCCCCCcccCCCCCccccc
Q 012401 159 LSLKDISEHRY-FDLVCKVFHVSYDDS---KG----LWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLR 230 (464)
Q Consensus 159 ~~Lkdi~~~~f-~Dlv~qVv~v~~~~~---~~----~~~L~VwDgT~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 230 (464)
..|+||+++.- ++++++|+.+. +.. ++ -..+.|=|-|
T Consensus 4 ~kI~dl~pg~~~v~v~~~V~~~~-~~~~~k~G~~~~v~~~~l~DeT---------------------------------- 48 (106)
T 2k75_A 4 VKIRDVSLSTPYVSVIGKITGIH-KKEYESDGTTKSVYQGYIEDDT---------------------------------- 48 (106)
T ss_dssp CCSTTCCTTCSEEEEEEEEEEEE-EEEEEETTEEEEEEEEEEECSS----------------------------------
T ss_pred EEHHHcCCCCceEEEEEEEEEcc-ccccccCCCeeEEEEEEEEcCC----------------------------------
Confidence 67999999865 89999999988 421 11 1112222211
Q ss_pred cCCCcceEEEEEecccchhhhccCCCCCcEEEEeCcEEEEeCcEEEEEEecCcceEEcCCCCh
Q 012401 231 NFFPVGTVLRVSTDRSYENFGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDNDN 293 (464)
Q Consensus 231 ~~p~~G~vl~V~~~~~~~~~~~~~~k~G~wV~l~Nv~~k~~~g~leG~l~~~ski~~l~~~d~ 293 (464)
| .+++++|++. +++|+.|+++|..++...|.++..+...+.|..+++.++
T Consensus 49 -----G-~I~~tlW~~~-------l~~Gdvv~i~ng~v~~~~g~~~L~v~~~~~I~~~~~~~~ 98 (106)
T 2k75_A 49 -----A-RIRISSFGKQ-------LQDSDVVRIDNARVAQFNGYLSLSVGDSSRIESVNVNIP 98 (106)
T ss_dssp -----C-EEEEEEESSC-------CCTTEEEEEEEEEEEEETTEEEEEECTTSEEEECCSCCC
T ss_pred -----C-eEEEEEEcCc-------cCCCCEEEEEeeEEeEECCEEEEEECCcEEEEECCCCCc
Confidence 3 4689999855 899999999999999999999999999999998887654
No 15
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=97.44 E-value=0.0008 Score=56.46 Aligned_cols=90 Identities=17% Similarity=0.163 Sum_probs=69.8
Q ss_pred cccccccCCceEeeEEEEEEeeeeC------C---CCeEEEEEEcCCCCCCCCCCCCCCcccCCCCCCcccCCCCCcccc
Q 012401 159 LSLKDISEHRYFDLVCKVFHVSYDD------S---KGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETL 229 (464)
Q Consensus 159 ~~Lkdi~~~~f~Dlv~qVv~v~~~~------~---~~~~~L~VwDgT~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 229 (464)
..|+|+++|..+|+++.|+.+. +. + .....+.|.|.|
T Consensus 8 ~~I~~L~~g~~v~i~~~V~~~~-~~~~~~~k~G~~~~~~~~~l~D~T--------------------------------- 53 (115)
T 2k50_A 8 DTISKLEEGAETPVTGRVMKIS-SPRTFTTRKGREGKLANVIIADDT--------------------------------- 53 (115)
T ss_dssp CCTTTCCTTCEEEEEEEEEEEC-CCEECCCTTSSCCEEEEEEEEETT---------------------------------
T ss_pred EEHHHCCCCCEeEEEEEEEECC-CceEEEcCCCCEEEEEEEEEEeCC---------------------------------
Confidence 6799999999999999999984 21 1 124455555544
Q ss_pred ccCCCcceEEEEEecccchhhhccCCCCCcEEEEeCcEEEE-eCcEEEEEEecCcceEEcCC
Q 012401 230 RNFFPVGTVLRVSTDRSYENFGRYFTATGKWVRIRNMSCQV-SSGMWHGLLQSSSKIRLFSD 290 (464)
Q Consensus 230 ~~~p~~G~vl~V~~~~~~~~~~~~~~k~G~wV~l~Nv~~k~-~~g~leG~l~~~ski~~l~~ 290 (464)
| .+++++|+..+.. .+.+++|+.|.+.|..++. ..|.++..+...+.|...++
T Consensus 54 ------G-~I~~t~w~~~~~~-~~~l~~G~vv~i~g~~v~~~f~g~~qL~~~~~~~i~~~~~ 107 (115)
T 2k50_A 54 ------G-ELRAVFWTENIKL-LKKFREGDVIRIKDVNIRGGFGGRKEAHLMPRSTVEVLDP 107 (115)
T ss_dssp ------E-EEEEEEETTGGGG-GGTCCTTSEEEEEEEEECCCSSSSCEEEECTTCCEEEESS
T ss_pred ------C-eEEEEEeCchhhh-hhcCCCCCEEEEEeeEEccccCCeEEEEECCCceEEECCc
Confidence 3 5689999987664 4679999999999999876 77888888888888877654
No 16
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=97.37 E-value=0.00085 Score=54.79 Aligned_cols=82 Identities=17% Similarity=0.175 Sum_probs=62.7
Q ss_pred eehhhhhhccCCEEEEEEEEEEcCCccc-c--CCC-ceEEEEEEEeCCCCCCCeEEEEecCCCCCCCCCCCCCCEEEEee
Q 012401 11 VRIKELAMHVKHKVNLLGVVLEFSIPRK-S--QGT-DYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILLKN 86 (464)
Q Consensus 11 ~~i~d~~~~~~~~vnviGVVvd~~~P~~-t--rG~-D~~~tl~I~D~S~~~~gl~v~iF~~~~~~LP~v~~~GDII~l~r 86 (464)
.+|+++. ++..++++|.|++..+++. + .|+ --..+++|.|+|= .|.+.+|.+.. .+ .+ ++||+|.+ +
T Consensus 3 ~kI~dl~--~g~~v~i~~~V~~~~~~r~~~~~~G~~~~v~~~~l~DeTG---~I~~tlW~~~~-~~-~i-~~Gdvv~i-~ 73 (97)
T 3e0e_A 3 YKISELM--PNLSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLKDDTG---SIRGTLWNELA-DF-EV-KKGDIAEV-S 73 (97)
T ss_dssp ECGGGCC--TTEEEEEEEEEEEECCCEEEC----CCEEEEEEEEEETTE---EEEEEEEGGGG-GC-CC-CTTCEEEE-E
T ss_pred eEHHHCC--CCCcEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCC---cEEEEEECCcc-cc-cc-CCCCEEEE-E
Confidence 3688887 5678999999999998765 2 254 3688899999865 39999998644 44 56 79999999 8
Q ss_pred EEEEEEcCeeEEEec
Q 012401 87 VMIKKHQAELSAVFY 101 (464)
Q Consensus 87 vkv~~~~g~~~~~~~ 101 (464)
.+++.+.|.+.+...
T Consensus 74 g~v~~~~~~~el~~g 88 (97)
T 3e0e_A 74 GYVKQGYSGLEISVD 88 (97)
T ss_dssp EEEEEC--CEEEEEE
T ss_pred EEEEEcCCeEEEEEC
Confidence 899999998887765
No 17
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=97.36 E-value=0.0018 Score=54.76 Aligned_cols=88 Identities=18% Similarity=0.171 Sum_probs=66.2
Q ss_pred cccccccCCc-eEeeEEEEEEeeeeC-----CCC---eEEEEEEcCCCCCCCCCCCCCCcccCCCCCCcccCCCCCcccc
Q 012401 159 LSLKDISEHR-YFDLVCKVFHVSYDD-----SKG---LWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETL 229 (464)
Q Consensus 159 ~~Lkdi~~~~-f~Dlv~qVv~v~~~~-----~~~---~~~L~VwDgT~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 229 (464)
..|+||+++. -+|+++.|+.+. +. .++ ...+.|-|-|
T Consensus 3 ~~I~dL~~~~~~v~~~~~V~~~~-~~~~~~~k~G~~~~~~~~l~D~T--------------------------------- 48 (119)
T 1o7i_A 3 EKVGNLKPNMESVNVTVRVLEAS-EARQIQTKNGVRTISEAIVGDET--------------------------------- 48 (119)
T ss_dssp CCGGGCCTTCSSEEEEEEEEEEC-CCEEECCTTCCEEEEEEEEEETT---------------------------------
T ss_pred EEHHHCcCCCCcEEEEEEEEECC-CCeeEEecCCCEEEEEEEEEeCC---------------------------------
Confidence 6799999986 799999999885 20 111 1222222211
Q ss_pred ccCCCcceEEEEEecccchhhhccCCCCCcEEEEeCcEEEEeCcEEEEEEecCcceEEcCCC
Q 012401 230 RNFFPVGTVLRVSTDRSYENFGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDN 291 (464)
Q Consensus 230 ~~~p~~G~vl~V~~~~~~~~~~~~~~k~G~wV~l~Nv~~k~~~g~leG~l~~~ski~~l~~~ 291 (464)
|. +++++|+..+ +.+++|+.|+++|..++...|.++..+...+.|...++.
T Consensus 49 ------G~-I~~tlW~~~~----~~~~~G~vv~i~~g~v~~~~g~~qL~i~~~~~i~~~~~~ 99 (119)
T 1o7i_A 49 ------GR-VKLTLWGKHA----GSIKEGQVVKIENAWTTAFKGQVQLNAGSKTKIAEASED 99 (119)
T ss_dssp ------EE-EEEEEEGGGT----TCCCTTCEEEEEEEEEEEETTEEEEEECTTCEEEECCCT
T ss_pred ------CE-EEEEEECChh----hcCCCCCEEEEEeEEEEEeCCEEEEEECCCEEEEEcCCc
Confidence 54 7899999765 358999999999999999999999999999999887653
No 18
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=97.30 E-value=0.0041 Score=51.81 Aligned_cols=89 Identities=16% Similarity=0.215 Sum_probs=66.6
Q ss_pred cccccccC-CceEeeEEEEEEeeeeCCCCeE--EEEEEcCCCCCCCCCCCCCCcccCCCCCCcccCCCCCccccccCCCc
Q 012401 159 LSLKDISE-HRYFDLVCKVFHVSYDDSKGLW--MLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPV 235 (464)
Q Consensus 159 ~~Lkdi~~-~~f~Dlv~qVv~v~~~~~~~~~--~L~VwDgT~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~p~~ 235 (464)
..|+||++ +..+|++++|+.+. +...+.. .+-|=|.|
T Consensus 6 ~kI~dl~~~~~~v~v~~~V~~~~-~~~~~~~~~~~~l~DeT--------------------------------------- 45 (109)
T 2kbn_A 6 TKIVDIVENGQWANLKAKVIQLW-ENTHESISQVGLLGDET--------------------------------------- 45 (109)
T ss_dssp CCTTTCCSTTCEEEEEEEEEEEE-ECCCSSEEEEEEEECTT---------------------------------------
T ss_pred eEHHHCCCCCCcEEEEEEEEEeE-cCCCCeEEEEEEEECCC---------------------------------------
Confidence 67999987 78899999999998 5222111 12222211
Q ss_pred ceEEEEEecccchhhhccCCCCCcEEEEeCcEEEEeCcEEEEEEecCcceEEcCCC
Q 012401 236 GTVLRVSTDRSYENFGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDN 291 (464)
Q Consensus 236 G~vl~V~~~~~~~~~~~~~~k~G~wV~l~Nv~~k~~~g~leG~l~~~ski~~l~~~ 291 (464)
| +++.++|+.. ....+++|+.|+++|..++.+.|.++-.+...+.|..++.+
T Consensus 46 G-~I~~t~W~~~---~~~~~~~G~~V~i~n~~v~~~~G~~~L~v~~~~~I~~~~~~ 97 (109)
T 2kbn_A 46 G-IIKFTIWKNA---ELPLLEQGESYLLRSVVVGEYNDRFQVQVNKNSSIEKLSEP 97 (109)
T ss_dssp C-CEEEEEEGGG---CCCCCCTTCEEEEEEEEEEEETTEEEEEECSSSEEEECSSC
T ss_pred C-eEEEEEECcc---cccccCCCCEEEEEEEEEEEECCEEEEEECCceEEEECCCc
Confidence 2 4688999843 24679999999999999999999999999998889877654
No 19
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=97.16 E-value=0.0013 Score=57.67 Aligned_cols=90 Identities=16% Similarity=0.173 Sum_probs=68.4
Q ss_pred CCCcceeehhhhhhccCC-EEEEEEEEEEcCCcc---cc-C--C-------CceEEEEEEEeCCCCCCCeEEEEecCCCC
Q 012401 5 RNQGGIVRIKELAMHVKH-KVNLLGVVLEFSIPR---KS-Q--G-------TDYVCVLKIVDDSQQSPELLVNIFTSSID 70 (464)
Q Consensus 5 ~~~y~y~~i~d~~~~~~~-~vnviGVVvd~~~P~---~t-r--G-------~D~~~tl~I~D~S~~~~gl~v~iF~~~~~ 70 (464)
..+..|+.|+|+. ++. .+|+.|.|++...+. +. | | ..-.+++.|-|++=. |.+.+..+.
T Consensus 11 ~~kp~~~kI~dL~--pg~~~v~l~~kVl~~~~v~~~~~~~R~dG~~~~~~r~~~V~~~lVgDeTG~---I~ftlW~e~-- 83 (145)
T 1wjj_A 11 KRKPVFVKVEQLK--PGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDETGC---ILFTARNDQ-- 83 (145)
T ss_dssp CCCCSSCCSTTCC--TTCCCEEEEEEEEEEEECCSSSSCCSCSSCCSSCCCCCCCEEEEEECSSCE---EEEEECTTH--
T ss_pred ccCccceEHHHcC--CCCCceEEEEEEEEcccccccccccccCCccccccCCceEEEEEEEcCCcE---EEEEEecCC--
Confidence 3456789999998 443 499999999988765 22 2 4 456788999998753 777777642
Q ss_pred CCCCCCCCCCEEEEeeEEEEEEcCeeEEEeccC
Q 012401 71 QLPRVLSPRDLILLKNVMIKKHQAELSAVFYKD 103 (464)
Q Consensus 71 ~LP~v~~~GDII~l~rvkv~~~~g~~~~~~~~~ 103 (464)
.+.+ ..||+|+|+++.+..|+|.+.+..++.
T Consensus 84 -~~~l-~~Gd~v~i~na~v~~~~G~~~L~vgk~ 114 (145)
T 1wjj_A 84 -VDLM-KPGATVILRNSRIDMFKGTMRLGVDKW 114 (145)
T ss_dssp -HHHT-CTTCEEEEEEEEEEEETTEEEEEECTT
T ss_pred -cCcC-CCCCEEEEeccEEEeECCEEEEEECCC
Confidence 3345 589999999999999999998877643
No 20
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=97.13 E-value=0.0074 Score=52.87 Aligned_cols=51 Identities=12% Similarity=0.105 Sum_probs=42.9
Q ss_pred EEEEEecccchhhhccCCCCCcEEEEeCcEEEEeCcEEEEEEecCcceEEcCCCC
Q 012401 238 VLRVSTDRSYENFGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDND 292 (464)
Q Consensus 238 vl~V~~~~~~~~~~~~~~k~G~wV~l~Nv~~k~~~g~leG~l~~~ski~~l~~~d 292 (464)
++++++|+..+. .+++||.|+|+|..+++..|.++..+...++|..++..+
T Consensus 74 ~I~ftlW~e~~~----~l~~Gd~v~i~na~v~~~~G~~~L~vgk~g~Ie~~~e~~ 124 (145)
T 1wjj_A 74 CILFTARNDQVD----LMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATGAAS 124 (145)
T ss_dssp EEEEEECTTHHH----HTCTTCEEEEEEEEEEEETTEEEEEECTTCCBCCCSCCC
T ss_pred EEEEEEecCCcC----cCCCCCEEEEeccEEEeECCEEEEEECCCEEEEECCCCc
Confidence 568999997554 388999999999999999999999888888887766533
No 21
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=96.85 E-value=0.012 Score=48.68 Aligned_cols=85 Identities=16% Similarity=0.151 Sum_probs=60.9
Q ss_pred cccccccccCCceEeeEEEEEEeeeeCC-----CC----eEEEEEEcCCCCCCCCCCCCCCcccCCCCCCcccCCCCCcc
Q 012401 157 YLLSLKDISEHRYFDLVCKVFHVSYDDS-----KG----LWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLE 227 (464)
Q Consensus 157 f~~~Lkdi~~~~f~Dlv~qVv~v~~~~~-----~~----~~~L~VwDgT~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~ 227 (464)
| ..|+||+++..+|+++.|+.+. +.. ++ ...+.|-|.|
T Consensus 5 ~-~~I~dL~~~~~v~v~g~V~~~~-~~r~~~~~~G~~~~v~~~~l~D~T------------------------------- 51 (105)
T 3dm3_A 5 T-YNIGELSPGMTATFEGEVISAL-PIKEFKRADGSIGKLKSFIVRDET------------------------------- 51 (105)
T ss_dssp E-ECGGGCCSSEEEEEEEEEEEEE-EEEEEECTTSCEEEEEEEEEEETT-------------------------------
T ss_pred c-eEHHHCCCCCeEEEEEEEEECC-CceEEEcCCCCeeEEEEEEEECCC-------------------------------
Confidence 5 7899999999999999999887 310 00 1122222211
Q ss_pred ccccCCCcceEEEEEecccchhhhccCCCCCcEEEEeCcEEEEe-CcEEEEEEecCcceEE
Q 012401 228 TLRNFFPVGTVLRVSTDRSYENFGRYFTATGKWVRIRNMSCQVS-SGMWHGLLQSSSKIRL 287 (464)
Q Consensus 228 ~~~~~p~~G~vl~V~~~~~~~~~~~~~~k~G~wV~l~Nv~~k~~-~g~leG~l~~~ski~~ 287 (464)
| .+++++|+..+.. .+++|+.|.| |-.++.. .|-+|..+-..+.|..
T Consensus 52 --------G-~IrvtlW~~~a~~---~l~~Gdvv~i-~g~vk~~~~g~~eL~~g~~~~i~~ 99 (105)
T 3dm3_A 52 --------G-SIRVTLWDNLTDI---DVGRGDYVRV-RGYIREGYYGGLECTANYVEILKK 99 (105)
T ss_dssp --------E-EEEEEEEGGGGGS---CCCTTCEEEE-EEEEEECTTSSEEEEEEEEEEEEC
T ss_pred --------C-cEEEEEECccccc---ccCCCCEEEE-EEEEEEccCCCEEEEeCCceEEEe
Confidence 5 5799999987764 7999999999 8888884 6677777766665543
No 22
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=96.27 E-value=0.038 Score=44.80 Aligned_cols=92 Identities=13% Similarity=0.022 Sum_probs=56.6
Q ss_pred cccccccCCceEeeEEEEEEeeeeCCCCeEEEEEEcCCCCCCCCCCCCCCcccCCCCCCcccCCCCCccccccCCCcceE
Q 012401 159 LSLKDISEHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPVGTV 238 (464)
Q Consensus 159 ~~Lkdi~~~~f~Dlv~qVv~v~~~~~~~~~~L~VwDgT~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~p~~G~v 238 (464)
..|+||+++..++++++|+.+. + .-...-.||++-.-.. ..+.| --| .
T Consensus 3 ~kI~dl~~g~~v~i~~~V~~~~-~----~r~~~~~~G~~~~v~~--~~l~D------------------------eTG-~ 50 (97)
T 3e0e_A 3 YKISELMPNLSGTINAEVVTAY-P----KKEFSRKDGTKGQLKS--LFLKD------------------------DTG-S 50 (97)
T ss_dssp ECGGGCCTTEEEEEEEEEEEEC-C----CEEEC----CCEEEEE--EEEEE------------------------TTE-E
T ss_pred eEHHHCCCCCcEEEEEEEEECC-C----ceEEEcCCCCeeEEEE--EEEEC------------------------CCC-c
Confidence 3699999999999999999886 2 1111112332111100 00000 015 6
Q ss_pred EEEEecccchhhhccCCCCCcEEEEeCcEEEEeCcEEEEEEecCcceE
Q 012401 239 LRVSTDRSYENFGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIR 286 (464)
Q Consensus 239 l~V~~~~~~~~~~~~~~k~G~wV~l~Nv~~k~~~g~leG~l~~~ski~ 286 (464)
+++++|+..+.. .+++||.|.+ |=.++...|.+|..+-..+.|.
T Consensus 51 I~~tlW~~~~~~---~i~~Gdvv~i-~g~v~~~~~~~el~~g~~~~i~ 94 (97)
T 3e0e_A 51 IRGTLWNELADF---EVKKGDIAEV-SGYVKQGYSGLEISVDNIGIIE 94 (97)
T ss_dssp EEEEEEGGGGGC---CCCTTCEEEE-EEEEEEC--CEEEEEEEEEEEE
T ss_pred EEEEEECCcccc---ccCCCCEEEE-EEEEEEcCCeEEEEECCCcEEE
Confidence 799999977753 7999999999 6677776677777776666654
No 23
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=95.82 E-value=0.061 Score=44.90 Aligned_cols=55 Identities=15% Similarity=0.100 Sum_probs=46.2
Q ss_pred ceEEEEEecccchhhhccCCCCCcEEEEeCcEEEEe-------CcEEEEEEecCcceEEcCCC
Q 012401 236 GTVLRVSTDRSYENFGRYFTATGKWVRIRNMSCQVS-------SGMWHGLLQSSSKIRLFSDN 291 (464)
Q Consensus 236 G~vl~V~~~~~~~~~~~~~~k~G~wV~l~Nv~~k~~-------~g~leG~l~~~ski~~l~~~ 291 (464)
| .+++++|...+......+++|+|+.|.|-+++.. .+-+|-.|...+.|...+++
T Consensus 51 G-~I~at~~~~~~~~f~~~l~eG~vy~Is~~~V~~a~~~y~~~~~~yei~f~~~T~I~~~~d~ 112 (114)
T 1ynx_A 51 G-EIRATAFNDFATKFNEILQEGKVYYVSKAKLQPAKPQFTNLTHPYELNLDRDTVIEECFDE 112 (114)
T ss_dssp E-EEEEEECHHHHHHHHHHSCSSSEEEEESCEEEECCTTTSSSSSCEEEEECSSCEEEESCCC
T ss_pred C-eEEEEECHHHHHHHHhhcccCcEEEECCcEEEECCCCcccCCCCEEEEECCCCEEEECCCC
Confidence 7 8899999988776578899999999999999983 24678899999999876553
No 24
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A
Probab=95.25 E-value=0.18 Score=49.05 Aligned_cols=85 Identities=16% Similarity=0.090 Sum_probs=63.4
Q ss_pred ccccccccccCCceEeeEEEEEEeeee----CCCCeEEEEEEcCCCCCCCCCCCCCCcccCCCCCCcccCCCCCcccccc
Q 012401 156 DYLLSLKDISEHRYFDLVCKVFHVSYD----DSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRN 231 (464)
Q Consensus 156 ~f~~~Lkdi~~~~f~Dlv~qVv~v~~~----~~~~~~~L~VwDgT~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 231 (464)
+| ..|++++.++.+|+++-|+..... ..+-..+|.++|-+.
T Consensus 5 ~y-~~l~~l~~~~~vnvigVV~~~~~p~~s~G~d~~~tl~I~D~S~---------------------------------- 49 (294)
T 1xjv_A 5 IY-TPLNQLKGGTIVNVYGVVKFFKPPYLSKGTDYCSVVTIVDQTN---------------------------------- 49 (294)
T ss_dssp CC-CCGGGCCSSEEEEEEEEEEEEEEEEECSSSSEEEEEEEECTTC----------------------------------
T ss_pred eE-EEHHHhhCCCeeEEEEEEEEcCCCccCCCCeEEEEEEEEcCCC----------------------------------
Confidence 46 789999999999999999977621 123478888888330
Q ss_pred CCCcceEEEEEecccchhhhccCC-CCCcEEEEeCcEEEEeCcEEEEEEec
Q 012401 232 FFPVGTVLRVSTDRSYENFGRYFT-ATGKWVRIRNMSCQVSSGMWHGLLQS 281 (464)
Q Consensus 232 ~p~~G~vl~V~~~~~~~~~~~~~~-k~G~wV~l~Nv~~k~~~g~leG~l~~ 281 (464)
-| |+|.++.++.+. ...+ ++||.|+|+|++++.+.|...|....
T Consensus 50 ---~g--l~v~iF~~~~~~-LP~v~~~GDII~l~~vki~~~~g~~~~v~~~ 94 (294)
T 1xjv_A 50 ---VK--LTCLLFSGNYEA-LPIIYKNGDIVRFHRLKIQVYKKETQGITSS 94 (294)
T ss_dssp ---CE--EEEEEEESSGGG-SCCCCSTTCEEEEEEEEEEEETTEEEEEEEE
T ss_pred ---CC--EEEEEECCChHH-CCCCCCCCCEEEEEEEEEEEECCeEEEEccC
Confidence 03 466677666665 5656 99999999999999988888775543
No 25
>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} SCOP: b.40.4.3 PDB: 1qzh_A
Probab=94.32 E-value=0.37 Score=43.72 Aligned_cols=86 Identities=12% Similarity=0.091 Sum_probs=58.6
Q ss_pred cccccCCceEeeEEEEEEee--eeC---C-CCeEEEEEEcCCCCCCCCCCCCCCcccCCCCCCcccCCCCCccccccCCC
Q 012401 161 LKDISEHRYFDLVCKVFHVS--YDD---S-KGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFP 234 (464)
Q Consensus 161 Lkdi~~~~f~Dlv~qVv~v~--~~~---~-~~~~~L~VwDgT~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~p~ 234 (464)
|.+++.++.+|+++-|+... +.. . +-..+|.++|=+- . .
T Consensus 36 l~~~~~g~~VNviGVVvd~~~P~~S~rGtkD~~~TltI~D~S~----~------------~------------------- 80 (187)
T 1qzg_A 36 QELQKKNTIVNLFGIVKDFTPSRQSLHGTKDWVTTVYLWDPTC----D------------T------------------- 80 (187)
T ss_dssp TSCCSSCEEEEEEEEEEEEEEEEECSSTTCCEEEEEEEECTTS----C------------T-------------------
T ss_pred HhhccCCCEEEEEEEEEEccCceecCCCCccEEEEEEEEeCCC----C------------C-------------------
Confidence 55668899999999998665 222 2 3478899999331 0 0
Q ss_pred cceEEEEEecccchhhhccCC-CCCcEEEEeCcEEEEeCcEEEEEEecC
Q 012401 235 VGTVLRVSTDRSYENFGRYFT-ATGKWVRIRNMSCQVSSGMWHGLLQSS 282 (464)
Q Consensus 235 ~G~vl~V~~~~~~~~~~~~~~-k~G~wV~l~Nv~~k~~~g~leG~l~~~ 282 (464)
.+..|.|.+..++.+. ...+ ++||.|+|+|++++.+.|...|.....
T Consensus 81 ~~~gL~v~iF~~~~e~-LP~V~~~GDIIlL~rvkiq~~~g~~~~v~~~~ 128 (187)
T 1qzg_A 81 SSIGLQIHLFSKQGND-LPVIKQVGQPLLLHQITLRSYRDRTQGLSKDQ 128 (187)
T ss_dssp TSCCEEEEEEESSSSC-SCCCCSTTCEEEEEEEEEEEETTEEEEEEEEE
T ss_pred CCCceEEEEECCChhh-CCCCCCCCCEEEEEEEEEEEECCeEEEEEcCc
Confidence 0112455555555543 4555 889999999999999998888865554
No 26
>3u4z_A Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.30A {Tetrahymena thermophila}
Probab=94.05 E-value=0.48 Score=36.52 Aligned_cols=87 Identities=23% Similarity=0.221 Sum_probs=68.7
Q ss_pred ehhhhhhccCCEEEEEEEEEEcCCccccCCCceEEEEEEEeCCCCCCCeEEEEecC-CCCCCCCCCCCCCEEEEeeEEEE
Q 012401 12 RIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTS-SIDQLPRVLSPRDLILLKNVMIK 90 (464)
Q Consensus 12 ~i~d~~~~~~~~vnviGVVvd~~~P~~trG~D~~~tl~I~D~S~~~~gl~v~iF~~-~~~~LP~v~~~GDII~l~rvkv~ 90 (464)
-|+++++...+..++.+-|+|... +|--+.++|.|.|+.. .++|.||-+ .-|.--.. ++.---.+..+.-|
T Consensus 3 lisevlktskqylsvlaqvvdiqs------sdknirlkicdnscnq-elkvvifpdlcyewrdkf-sinkwyyfnefvrq 74 (109)
T 3u4z_A 3 LISEVLKTSKQYLSVLAQVVDIQS------SDKNIRLKICDNSCNQ-ELKVVIFPDLCYEWRDKF-SINKWYYFNEFVRQ 74 (109)
T ss_dssp CHHHHTTCCCSEEEEEEEEEEEEC------CSSCEEEEEECSSCSS-CEEEEECTTHHHHHTTTC-CTTCEEEEEEEEEE
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhc------CCCceEEEeecccccc-eeEEEEchhHHHHHHhhc-chhhhhhHHHHHHH
Confidence 367888778889999999999854 5777899999999975 499999974 22344445 67888889999999
Q ss_pred EEcCeeEEEeccCccEE
Q 012401 91 KHQAELSAVFYKDSSSF 107 (464)
Q Consensus 91 ~~~g~~~~~~~~~~ss~ 107 (464)
.||+++++-.|-. ||.
T Consensus 75 iyndevqlknnih-ssi 90 (109)
T 3u4z_A 75 IYNDEVQLKNNIH-SSI 90 (109)
T ss_dssp ESSSCEEEECCTT-CEE
T ss_pred HhhhHHhHhhhhh-hhh
Confidence 9999999887744 443
No 27
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=93.80 E-value=0.44 Score=42.98 Aligned_cols=72 Identities=11% Similarity=0.056 Sum_probs=52.0
Q ss_pred CccccHHHHhhC----CCCCceeEEEEEEEeecCCCccccccC--------------------------CCCeEEEEEEE
Q 012401 331 VASVTLMKIATQ----LQGNVRCCCIVRVVSIHPFQAEHYSSP--------------------------NGSSEYTMKLT 380 (464)
Q Consensus 331 ~p~ttL~dIL~~----p~v~~kfr~~VRVV~~~P~~~edf~~~--------------------------~~~w~~rf~L~ 380 (464)
.+..||+||... ..-+.-|.+.+.|+.+-+.+.-=-|+| +-.|.|.+.+.
T Consensus 5 ~~~kti~qi~~~~lg~~~k~~~f~v~atI~~i~~d~~~Y~aC~~~~CnKKv~~~~~g~~~CekC~~~~~~~~~ry~l~~~ 84 (181)
T 1l1o_C 5 TNWKTLYEVKSENLGQGDKPDYFSSVATVVYLRKENCMYQACPTQDCNKKVIDQQNGLYRCEKCDTEFPNFKYRMILSVN 84 (181)
T ss_dssp CCBCCHHHHHHHTTTSSSSCEEEEEEEEEEEECCSTTEEEBCCSTTCCCBCEEETTTEEEETTTTEEESSCCEEEEEEEE
T ss_pred cceEEHHHHhhhccCCCCCCcEEEEEEEEEEEeCCCEEECCCCchhcCCccccCCCCeEECCCCCCcCCCceEEEEEEEE
Confidence 356789999862 122344888888887766433111111 23688899999
Q ss_pred EeCCCceEEEEEeccccccccC
Q 012401 381 LEDPTARIHALLCGKEWVKFFG 402 (464)
Q Consensus 381 lED~t~ri~~~v~~~da~~f~~ 402 (464)
|.|.|+.+|+.++++.|+.+||
T Consensus 85 i~D~Tg~~~~t~F~~~ae~ilG 106 (181)
T 1l1o_C 85 IADFQENQWVTCFQESAEAILG 106 (181)
T ss_dssp EECSSCEEEEEEEHHHHHHHHS
T ss_pred EEeCCCCEEEEEEhHHHHHHhC
Confidence 9999999999999999999996
No 28
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=92.36 E-value=0.97 Score=38.59 Aligned_cols=69 Identities=13% Similarity=0.121 Sum_probs=50.6
Q ss_pred CEEEEEEEEEEcCCccccCCCceEEEEEEEeCCCCCCCeEEEEecCCCC----CCCCCCCCCCEEEEeeEEEEEEcCeeE
Q 012401 22 HKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSID----QLPRVLSPRDLILLKNVMIKKHQAELS 97 (464)
Q Consensus 22 ~~vnviGVVvd~~~P~~trG~D~~~tl~I~D~S~~~~gl~v~iF~~~~~----~LP~v~~~GDII~l~rvkv~~~~g~~~ 97 (464)
..|.++|+|.+... + .=.++++|-|.|= .|.++++-...+ ..+.+ .+|++|++..- ++.|+|+.+
T Consensus 37 ~~V~iVG~V~~~~~-----~-~~~~~~~ldD~TG---~I~~~~W~~~~~~~~~~~~~~-~~g~yVrV~G~-v~~f~g~~q 105 (136)
T 4gop_B 37 GQLTFVAVVRNISR-----N-ATNVAYSVEDGTG---QIEVRQWLDSSSDDSSKASEI-RNNVYVRVLGT-LKSFQNRRS 105 (136)
T ss_dssp CEEEEEEEEEEEEE-----C-SSEEEEEEECSSC---EEEEEEECC--------CCSC-CTTCEEEEEEE-EEEETTEEE
T ss_pred EEEEEEEEEEEEEe-----c-CCeEEEEEECCCC---CEEEEEecccCCccccccccc-CCCCEEEEEEE-EEEeCCEEE
Confidence 35899999999853 1 2367888988764 399999975443 46777 68999999665 899999987
Q ss_pred EEec
Q 012401 98 AVFY 101 (464)
Q Consensus 98 ~~~~ 101 (464)
+...
T Consensus 106 i~~~ 109 (136)
T 4gop_B 106 ISSG 109 (136)
T ss_dssp EEES
T ss_pred EEEE
Confidence 6654
No 29
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=91.99 E-value=0.049 Score=45.48 Aligned_cols=81 Identities=11% Similarity=0.146 Sum_probs=62.7
Q ss_pred ceeehhhhhhccCC-EEEEEEEEEEcCCccc---cCCCceEEEEEEEeCCCCCCCeEEEEecCCCCCC-CCCCCCCCEEE
Q 012401 9 GIVRIKELAMHVKH-KVNLLGVVLEFSIPRK---SQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQL-PRVLSPRDLIL 83 (464)
Q Consensus 9 ~y~~i~d~~~~~~~-~vnviGVVvd~~~P~~---trG~D~~~tl~I~D~S~~~~gl~v~iF~~~~~~L-P~v~~~GDII~ 83 (464)
.+++|+++. ++. ..++.|-|+....++. .+|..-.+++.|.|++- .|.+.+|.+..+.+ +.+ .+|+|+.
T Consensus 3 ~~~~Is~L~--p~~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~De~G---~I~at~~~~~~~~f~~~l-~eG~vy~ 76 (114)
T 1ynx_A 3 PIFAIEQLS--PYQNVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFLDTSG---EIRATAFNDFATKFNEIL-QEGKVYY 76 (114)
T ss_dssp CBCCGGGCC--TTTCCCEEEEEEEEEEEEEEEECSSCEEEEEEEEEEETTE---EEEEEECHHHHHHHHHHS-CSSSEEE
T ss_pred ceEEHHHCC--CCCCceEEEEEEEEeccceEEecCCCCceEEEEEEECCCC---eEEEEECHHHHHHHHhhc-ccCcEEE
Confidence 578999997 443 4899999998776532 25667889999999974 49999998755544 445 7999999
Q ss_pred EeeEEEEEEcCe
Q 012401 84 LKNVMIKKHQAE 95 (464)
Q Consensus 84 l~rvkv~~~~g~ 95 (464)
+.+.+|+.-+++
T Consensus 77 Is~~~V~~a~~~ 88 (114)
T 1ynx_A 77 VSKAKLQPAKPQ 88 (114)
T ss_dssp EESCEEEECCTT
T ss_pred ECCcEEEECCCC
Confidence 999999986554
No 30
>1miu_A BRCA2, breast cancer type 2 susceptibility protein; tumor suppressor, breast cancer susceptibility, DNA-binding; 3.10A {Mus musculus} SCOP: a.170.1.1 a.171.1.1 b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1iyj_B 1mje_A
Probab=91.73 E-value=1.5 Score=47.55 Aligned_cols=152 Identities=17% Similarity=0.193 Sum_probs=95.5
Q ss_pred eEEEEEEEeCCCCCCCeEEEEecCCCCCCCCCCCCCCEEEEeeEEEEEEcC-----eeEEEeccCccEEEEEeCCCCCCC
Q 012401 44 YVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILLKNVMIKKHQA-----ELSAVFYKDSSSFALFDGNSGSNL 118 (464)
Q Consensus 44 ~~~tl~I~D~S~~~~gl~v~iF~~~~~~LP~v~~~GDII~l~rvkv~~~~g-----~~~~~~~~~~ss~~lf~~~~~~~~ 118 (464)
=..+++|+|-.-.....-++|-+++.+ +......|.+.++.++.....++ .+++.+.+. |.|---+.... .+
T Consensus 511 p~~klRV~d~~~~~k~~iLSIW~P~ed-l~s~L~EG~~y~iy~L~~s~s~~~~~~~~lqLtAtk~-T~~~~L~~~~~-~~ 587 (738)
T 1miu_A 511 TVWKLRVTSYKKKEKSALLSIWRPSSD-LSSLLTEGKRYRIYHLAVSKSKSKFERPSIQLTATKR-TQYQQLPVSSE-TL 587 (738)
T ss_dssp CEEEEEEEESSSSCCCEEEEEESCCHH-HHHHCCSSCEEEEEEECCCCCCCSSSCCSCEEEEEEE-EEEEEECCCHH-HH
T ss_pred eeEEEEEEeccCCCceEEEEEeCCChH-HHhhccCCcEEEEEEeeccCCCccCccceEEEeeccc-ceeEECCcchh-hh
Confidence 467788888554445688899998655 44433789999999998876654 256555533 66653322110 00
Q ss_pred CccccCCCCCCCCHHHHHHHHHHHHhhhcCcccCCCccccccccc---ccCCceEeeEEEEEEeeeeCCCCeEEEEEEcC
Q 012401 119 LPYQSSPQRFEITEAEERRINVLRQWCVGFEFSSGSNDYLLSLKD---ISEHRYFDLVCKVFHVSYDDSKGLWMLFVWDG 195 (464)
Q Consensus 119 ~Py~~s~~~~~~~~~e~~~v~~Lr~W~~~~~~~~~~~~f~~~Lkd---i~~~~f~Dlv~qVv~v~~~~~~~~~~L~VwDg 195 (464)
.+ . |++. ... .| ..|.+ ....+.||++|-||.|- ...+..-.+|+.|+
T Consensus 588 ~~-~-----~~pR-------------------~~~--~~-~~l~~~~f~p~~~EvDivG~Vv~v~-~~~~~~~~vylsD~ 638 (738)
T 1miu_A 588 LQ-V-----YQPR-------------------ESL--HF-SRLSDPAFQPPCSEVDVVGVVVSVV-KPIGLAPLVYLSDE 638 (738)
T ss_dssp TT-T-----CCCC-------------------CBC--CS-GGGGSSSCCTTTTEEEEEEEEEEEE-CCTTSCCEEEEECS
T ss_pred cc-c-----cCCc-------------------cee--eH-HHhcCccccCCCCceeEEEEEEEEc-ccCcccceEEEEcC
Confidence 00 0 1111 111 23 44444 45689999999999997 43455668888885
Q ss_pred CCCCCCCCCCCCCcccCCCCCCcccCCCCCccccccCCCcceEEEEEecccchhhhccCCCCCcEEEEeCcEEEE
Q 012401 196 TDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPVGTVLRVSTDRSYENFGRYFTATGKWVRIRNMSCQV 270 (464)
Q Consensus 196 T~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~p~~G~vl~V~~~~~~~~~~~~~~k~G~wV~l~Nv~~k~ 270 (464)
.-| .|-|.+|..-. -+ +++|..|.+.|++.+.
T Consensus 639 ~~n---------------------------------------ll~Ikf~~~l~---eD-~~~~~~va~sNL~~r~ 670 (738)
T 1miu_A 639 CLN---------------------------------------LLVVKFGIDLN---ED-IKPRVLIAASNLQCQP 670 (738)
T ss_dssp SSC---------------------------------------EEEEEESSCCC---SC-CCSSCEEEEEEEECCS
T ss_pred CCc---------------------------------------EEEEEEecCch---hh-CccccEEEEeeeEeec
Confidence 411 22466676544 23 9999999999999887
No 31
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=91.58 E-value=1.5 Score=37.16 Aligned_cols=70 Identities=19% Similarity=0.249 Sum_probs=49.0
Q ss_pred CEEEEEEEEEEcCCccccCCCceEEEEEEEeCCCCCCCeEEEEecCCCC---CCCCCCCCCCEEEEeeEEEEEEcCeeEE
Q 012401 22 HKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSID---QLPRVLSPRDLILLKNVMIKKHQAELSA 98 (464)
Q Consensus 22 ~~vnviGVVvd~~~P~~trG~D~~~tl~I~D~S~~~~gl~v~iF~~~~~---~LP~v~~~GDII~l~rvkv~~~~g~~~~ 98 (464)
..|.+.|+|.+... .+-.++++|-|.+=. .|.++++-...+ ....+ ..||.|++..- ++.|+|+.++
T Consensus 32 ~~V~iVG~V~~~~~------~~~~~~~~ldD~TG~--~I~~~~W~~~~~~~~~~~~~-~~g~yVrV~G~-l~~f~g~~qi 101 (132)
T 3kdf_D 32 SQVTIVGIIRHAEK------APTNIVYKIDDMTAA--PMDVRQWVDTDDTSSENTVV-PPETYVKVAGH-LRSFQNKKSL 101 (132)
T ss_dssp CEEEEEEEEEEEEE------CSSEEEEEEECSSSS--CEEEEEEC---------CCC-CTTCEEEEEEE-EEEETTEEEE
T ss_pred EEEEEEEEEEEEEE------cCCeEEEEEECCCCC--EEEEEEEccCCCcccccccc-cCCCEEEEEEE-EEeECCEEEE
Confidence 35899999999853 234678889997541 399999975432 25556 68999999765 8999999776
Q ss_pred Eec
Q 012401 99 VFY 101 (464)
Q Consensus 99 ~~~ 101 (464)
...
T Consensus 102 ~~~ 104 (132)
T 3kdf_D 102 VAF 104 (132)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 32
>3ebe_A Protein MCM10 homolog; OB-fold, zinc finger, CCCH, DNA replication, metal-binding, zinc-finger, replication; 2.30A {Xenopus laevis} PDB: 3h15_A
Probab=90.92 E-value=0.22 Score=45.78 Aligned_cols=82 Identities=15% Similarity=0.209 Sum_probs=57.5
Q ss_pred Ccceeehhhhhhc------cCCEEEEEEEEEEcCCccccC-CCceEEEEEEEeCCCCCCCeEEEEecCCCCCCCCCCCCC
Q 012401 7 QGGIVRIKELAMH------VKHKVNLLGVVLEFSIPRKSQ-GTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPR 79 (464)
Q Consensus 7 ~y~y~~i~d~~~~------~~~~vnviGVVvd~~~P~~tr-G~D~~~tl~I~D~S~~~~gl~v~iF~~~~~~LP~v~~~G 79 (464)
..+|++|.+++.. .....-++|||++-..|+.+. |+.| +..+|.|-.-....+.+-+|.+..+.+=.+ .+|
T Consensus 35 ~~k~~~l~~L~~~v~~~~~~e~dwv~~GVV~~Ks~pk~~~~gk~y-~~w~l~DL~~~~~~V~lfLFg~a~~~~~k~-~~G 112 (200)
T 3ebe_A 35 GRKLIRLAQLQNKIATEKLEEEDWVTFGVIVKKITPQSSNNGKTF-SIWRLNDLKDLDKYISLFLFGDVHKEHWKT-DQG 112 (200)
T ss_dssp TCEECCGGGHHHHHHTTCSTTSCEEEEEEEEEEECC-------CC-EEEEEECSSSTTCCEEEEECHHHHHHHTTC-CTT
T ss_pred CCeEEeHHHHHhhccCCCCCcCCEEEEEEEEecCCccCcCCCCeE-EEEEEEecCCCCcEEEEEEechHHHHhcCc-CCc
Confidence 3467888888652 123466999999999998874 5555 568898876655569999998655556567 689
Q ss_pred CEEEEeeEEEE
Q 012401 80 DLILLKNVMIK 90 (464)
Q Consensus 80 DII~l~rvkv~ 90 (464)
+||-|-|-.+-
T Consensus 113 ~ViaiLNP~i~ 123 (200)
T 3ebe_A 113 TVIGLLNANPM 123 (200)
T ss_dssp EEEEEESCEEC
T ss_pred eEEEEECCEEc
Confidence 99999999874
No 33
>3u58_A Tetrahymena TEB1 AB; tetrahymena, telomerase, TEB1, processivity factor, DNA BIND protein-DNA complex; HET: DNA; 2.61A {Tetrahymena thermophila}
Probab=90.83 E-value=1.7 Score=37.12 Aligned_cols=85 Identities=21% Similarity=0.212 Sum_probs=68.9
Q ss_pred eehhhhhhccCCEEEEEEEEEEcCCccccCCCceEEEEEEEeCCCCCCCeEEEEecC-CCCCCCCCCCCCCEEEEeeEEE
Q 012401 11 VRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTS-SIDQLPRVLSPRDLILLKNVMI 89 (464)
Q Consensus 11 ~~i~d~~~~~~~~vnviGVVvd~~~P~~trG~D~~~tl~I~D~S~~~~gl~v~iF~~-~~~~LP~v~~~GDII~l~rvkv 89 (464)
.-|+++++...+..+|.+-|+|... +|--+.++|.|.|+.. .++|.||-+ .-|.--.. ++.---.+....-
T Consensus 120 llisevlktskqylsvlaqvvdiqs------sdknirlkicdnscnq-elkvvifpdlcyewrdkf-sinkwyyfnefvr 191 (213)
T 3u58_A 120 LLISEVLKTSKQYLSVLAQVVDIQS------SDKNIRLKICDNSCNQ-ELKVVIFPDLCYEWRDKF-SINKWYYFNEFVR 191 (213)
T ss_dssp BCHHHHTTCCCSEEEEEEEEEEEEE------CSSCEEEEEECTTCSC-CEEEEECTTTTGGGTTCC-CTTCEEEEEEEEE
T ss_pred eehHHHHHHhHHHHHHHHHhhcccc------CCCceEEEeecccccc-eeEEEEchhHhhHhhhhc-chhhhhhHHHHHH
Confidence 4578888888889999999999854 5777899999999975 499999975 33555555 7888888988989
Q ss_pred EEEcCeeEEEeccC
Q 012401 90 KKHQAELSAVFYKD 103 (464)
Q Consensus 90 ~~~~g~~~~~~~~~ 103 (464)
|.||+++++-.|-.
T Consensus 192 qiyndevqlknnih 205 (213)
T 3u58_A 192 QIYNDEVQLKNNIH 205 (213)
T ss_dssp CCSSSSCEEECCTT
T ss_pred HHhhhhhhhhhhhh
Confidence 99999998877643
No 34
>4hik_A Protection of telomeres protein 1; specificity, plasticity, promiscuity, OB-fold, ssDNA binding stranded telomeric DNA; HET: DNA; 1.64A {Schizosaccharomyces pombe} PDB: 4hid_A* 4him_A* 4hio_A* 4hj5_A* 4hj7_A* 4hj8_A* 4hj9_A* 4hja_A*
Probab=89.91 E-value=0.54 Score=40.82 Aligned_cols=77 Identities=10% Similarity=0.119 Sum_probs=56.3
Q ss_pred ceeehhhhhhccCCEEEEEEEEEEcCCccccCCCceEEEEEEEeCCCC--------------CC------CeEEEEecCC
Q 012401 9 GIVRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQ--------------SP------ELLVNIFTSS 68 (464)
Q Consensus 9 ~y~~i~d~~~~~~~~vnviGVVvd~~~P~~trG~D~~~tl~I~D~S~~--------------~~------gl~v~iF~~~ 68 (464)
+|.-|+|+. .++.++++|=|+.. |. .+ -.++|.++|=+.. |. .|.|.+|-++
T Consensus 4 kf~llkdv~--~~~F~Dl~~qVv~~--~~--~~--~~~~LyVTDYT~N~~~~~~~~~~~~~~W~Gp~G~~tlqVtlwd~h 75 (143)
T 4hik_A 4 SFSLLSQIT--PHQRCSFYAQVIKT--WY--SD--KNFTLYVTDYTENELFFPMSPYTSSSRWRGPFGRFSIRCILWDEH 75 (143)
T ss_dssp CCCCGGGCC--SSCEEEEEEEEEEE--EE--CS--SCEEEEEECSCCCTTSCCBCTTCTTCSCCCCCBSCCEEEEECHHH
T ss_pred hhhhHHhCC--CCCeEEEEEEEEEE--Ec--CC--CeEEEEEecCCCCCcccccccCCCCccccCCCCcEEEEEEEECcH
Confidence 466788997 88999999999983 21 22 5688889995543 11 2899998765
Q ss_pred CCCCCC-CCCCCCEEEEeeEEEEEEcC
Q 012401 69 IDQLPR-VLSPRDLILLKNVMIKKHQA 94 (464)
Q Consensus 69 ~~~LP~-v~~~GDII~l~rvkv~~~~g 94 (464)
.+..=. + .+||.|+|+|++++.-.+
T Consensus 76 a~~ar~~l-k~Gd~v~L~Nv~iK~~~~ 101 (143)
T 4hik_A 76 DFYCRNYI-KEGDYVVMKNVRTKIDHL 101 (143)
T ss_dssp HHHHTTTC-CTTCEEEEEEEEEEECTT
T ss_pred HHHHHhhC-CCCCEEEEEeEEEeecCC
Confidence 433333 5 689999999999987753
No 35
>1jb7_A Telomere-binding protein alpha subunit; DNA-protein interactions, DNA HYDR sodium ION, quadruplex DNA, DNA-binding protein-DNA complex; 1.86A {Sterkiella nova} SCOP: b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1kix_A 1otc_A* 2i0q_A 1ph6_A 1ph1_A 1phj_A* 1ph3_A 1pa6_A 1ph4_A 1ph7_A 1ph8_A 1ph9_A 1ph5_A* 1ph2_A* 1k8g_A
Probab=88.86 E-value=2.1 Score=44.69 Aligned_cols=105 Identities=12% Similarity=0.057 Sum_probs=68.9
Q ss_pred ccccccccc--cCCceEeeEEEEEEeee--eC--CCCeEEEEEEcCCCC-CCCCCCCCCCcccCCCCCCcccCCCCCccc
Q 012401 156 DYLLSLKDI--SEHRYFDLVCKVFHVSY--DD--SKGLWMLFVWDGTDV-PPLSIPGKLEDEEHNPLPLHIESSPLDLET 228 (464)
Q Consensus 156 ~f~~~Lkdi--~~~~f~Dlv~qVv~v~~--~~--~~~~~~L~VwDgT~~-~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~ 228 (464)
.| ..|+++ +.++.+|+++-|+.... .. .+...+|.|+|-+-+ +... . .| +.
T Consensus 37 ~y-~~L~~a~~~~~~~VnviGVVvd~~~P~~T~G~D~~~t~tI~D~S~~~~~~~----~-----~G---------l~--- 94 (495)
T 1jb7_A 37 EY-VELAKASLTSAQPQHFYAVVIDATFPYKTNQERYICSLKIVDPTLYLKQQK----G-----AG---------DA--- 94 (495)
T ss_dssp CB-CCTTTSCSSCCSCEEEEEEEEEECCCEECSSSCEEEEEEEEBTTBSBCCTT----S-----SC---------SC---
T ss_pred cc-EEHHHHHhccCCeEEEEEEEeecCCceecCCCeEEEEEEEEeCCCCccccc----c-----cc---------cc---
Confidence 57 889988 47999999999997652 21 134889999995532 1100 0 00 00
Q ss_pred cccCCCcceEEEEEecccchhhhccCC-CCCcEEEEeCcEEEEeCcEEEEEEecC--cceEEcCC
Q 012401 229 LRNFFPVGTVLRVSTDRSYENFGRYFT-ATGKWVRIRNMSCQVSSGMWHGLLQSS--SKIRLFSD 290 (464)
Q Consensus 229 ~~~~p~~G~vl~V~~~~~~~~~~~~~~-k~G~wV~l~Nv~~k~~~g~leG~l~~~--ski~~l~~ 290 (464)
...+.|.++.++.+. ...+ ++||.|+|+|++++.+.|...|..... |.+.+.+.
T Consensus 95 -------~~~~~v~iF~~~~e~-LP~V~~~GDII~LhrvkIq~~ng~~~~v~~~~~~SswavF~~ 151 (495)
T 1jb7_A 95 -------SDYATLVLYAKRFED-LPIIHRAGDIIRVHRATLRLYNGQRQFNANVFYSSSWALFST 151 (495)
T ss_dssp -------BCCEEEEEEESSGGG-SCCCCEETCEEEEEEEEEEEETTEEEEEEETTTTCEEEEECS
T ss_pred -------cCceEEEEECCChHH-CCCCCCCCCEEEEEEEEEEEECCcEEEEecCCCceEEEEEeC
Confidence 012356666655554 5666 689999999999999998888876643 55555444
No 36
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=87.78 E-value=3.3 Score=39.55 Aligned_cols=81 Identities=19% Similarity=0.249 Sum_probs=55.9
Q ss_pred eehhhhhhcc--C----------CEEEEEEEEEEcCCccccCCCceEEEEEEEeCCCCCCCeEEEEecCCCC---CCCCC
Q 012401 11 VRIKELAMHV--K----------HKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSID---QLPRV 75 (464)
Q Consensus 11 ~~i~d~~~~~--~----------~~vnviGVVvd~~~P~~trG~D~~~tl~I~D~S~~~~gl~v~iF~~~~~---~LP~v 75 (464)
+.|+++++.. + ..|.++|+|++... ++ =.++++|-|.+=. -|.++++....+ ....+
T Consensus 49 vtIkqil~a~~~d~~f~i~g~~i~~V~ivG~V~~i~~-----~~-~~~~~~L~D~TG~--~I~~k~W~~~~~~~~~~~~~ 120 (270)
T 2pi2_A 49 CTISQLLSATLVDEVFRIGNVEISQVTIVGIIRHAEK-----AP-TNIVYKIDDMTAA--PMDVRQWVDTDDTSSENTVV 120 (270)
T ss_dssp CCHHHHHHCEEETTEEEETTEEESEEEEEEEEEEEEE-----CS-SEEEEEEECSSSS--CEEEEEECC-------CCCC
T ss_pred EEHHHHhcCccCCCcEEECCEEEEEEEEEEEEEEEEe-----cc-ceEEEEEECCCCC--EEEEEEEcCcCcccchhhcC
Confidence 4577777631 1 25889999999742 23 3568889997631 299999975432 34556
Q ss_pred CCCCCEEEEeeEEEEEEcCeeEEEec
Q 012401 76 LSPRDLILLKNVMIKKHQAELSAVFY 101 (464)
Q Consensus 76 ~~~GDII~l~rvkv~~~~g~~~~~~~ 101 (464)
..|++|+++. +++.|+|+.++...
T Consensus 121 -~~G~yVrV~G-~v~~f~g~~qi~i~ 144 (270)
T 2pi2_A 121 -PPETYVKVAG-HLRSFQNKKSLVAF 144 (270)
T ss_dssp -CTTCEEEEEE-EEEEETTEEEEEEE
T ss_pred -CCCCEEEEEE-EEEecCCeeEEEEE
Confidence 6899999975 88899999877654
No 37
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=83.77 E-value=0.33 Score=43.51 Aligned_cols=32 Identities=9% Similarity=0.243 Sum_probs=30.1
Q ss_pred CeEEEEEEEEeCCCceEEEEEeccccccccCC
Q 012401 372 SSEYTMKLTLEDPTARIHALLCGKEWVKFFGG 403 (464)
Q Consensus 372 ~w~~rf~L~lED~t~ri~~~v~~~da~~f~~~ 403 (464)
.|.|.+.+.|.|.|+.+|+.++++.|+.|||.
T Consensus 72 ~~RYil~~~i~D~TG~~wvt~F~e~ae~ilG~ 103 (172)
T 3u50_C 72 QVHLMLRAFVQDSTGTIPVMIFDQQSSQLINQ 103 (172)
T ss_dssp EEEECEEEEEEETTEEEEEEECHHHHHHHHHH
T ss_pred eEEEEEEEEEEeCCCCEEEEEEhHHHHHHhCC
Confidence 57888999999999999999999999999986
No 38
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=80.78 E-value=21 Score=30.03 Aligned_cols=86 Identities=16% Similarity=0.061 Sum_probs=54.4
Q ss_pred CCceEeeEEEEEEeeeeCCCCeEEEEEEcCCCCCCCCCCCCCCcccCCCCCCcccCCCCCccccccCCCcceEEEEEecc
Q 012401 166 EHRYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPVGTVLRVSTDR 245 (464)
Q Consensus 166 ~~~f~Dlv~qVv~v~~~~~~~~~~L~VwDgT~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~p~~G~vl~V~~~~ 245 (464)
+=+.+.+++.|+.+. + ......+.+-|||+. |.+.+|.
T Consensus 35 ~i~~V~iVG~V~~~~-~-~~~~~~~~ldD~TG~----------------------------------------I~~~~W~ 72 (136)
T 4gop_B 35 ELGQLTFVAVVRNIS-R-NATNVAYSVEDGTGQ----------------------------------------IEVRQWL 72 (136)
T ss_dssp BCCEEEEEEEEEEEE-E-CSSEEEEEEECSSCE----------------------------------------EEEEEEC
T ss_pred EEEEEEEEEEEEEEE-e-cCCeEEEEEECCCCC----------------------------------------EEEEEec
Confidence 446789999999997 5 567888999998842 2345555
Q ss_pred cchhh---hccCCCCCcEEEEeCcEEEEeCcEEEEEEecCcceEEcCCCChhHHH
Q 012401 246 SYENF---GRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDNDNVVWD 297 (464)
Q Consensus 246 ~~~~~---~~~~~k~G~wV~l~Nv~~k~~~g~leG~l~~~ski~~l~~~d~~v~~ 297 (464)
..+.. ....+++|++|+...- ++...|..+... .+|+.+.+.+....+
T Consensus 73 ~~~~~~~~~~~~~~~g~yVrV~G~-v~~f~g~~qi~~---~~ir~v~d~Nei~~H 123 (136)
T 4gop_B 73 DSSSDDSSKASEIRNNVYVRVLGT-LKSFQNRRSISS---GHMRPVIDYNEVMFH 123 (136)
T ss_dssp C--------CCSCCTTCEEEEEEE-EEEETTEEEEEE---SEEEECSSHHHHHHH
T ss_pred ccCCcccccccccCCCCEEEEEEE-EEEeCCEEEEEE---EEEEECCCccHHHHH
Confidence 43321 2467899999988765 455566543322 466766655443333
No 39
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=77.60 E-value=30 Score=28.87 Aligned_cols=82 Identities=12% Similarity=0.057 Sum_probs=51.5
Q ss_pred ceEeeEEEEEEeeeeCCCCeEEEEEEcCCCCCCCCCCCCCCcccCCCCCCcccCCCCCccccccCCCcceEEEEEecccc
Q 012401 168 RYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPVGTVLRVSTDRSY 247 (464)
Q Consensus 168 ~f~Dlv~qVv~v~~~~~~~~~~L~VwDgT~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~p~~G~vl~V~~~~~~ 247 (464)
+.+.+++.|..+. + ......+.+-|||++. +.+..|...
T Consensus 32 ~~V~iVG~V~~~~-~-~~~~~~~~ldD~TG~~---------------------------------------I~~~~W~~~ 70 (132)
T 3kdf_D 32 SQVTIVGIIRHAE-K-APTNIVYKIDDMTAAP---------------------------------------MDVRQWVDT 70 (132)
T ss_dssp CEEEEEEEEEEEE-E-CSSEEEEEEECSSSSC---------------------------------------EEEEEEC--
T ss_pred EEEEEEEEEEEEE-E-cCCeEEEEEECCCCCE---------------------------------------EEEEEEccC
Confidence 5689999999997 5 5688999999999621 123344332
Q ss_pred hh--hhccCCCCCcEEEEeCcEEEEeCcEEEEEEecCcceEEcCCCChh
Q 012401 248 EN--FGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDNDNV 294 (464)
Q Consensus 248 ~~--~~~~~~k~G~wV~l~Nv~~k~~~g~leG~l~~~ski~~l~~~d~~ 294 (464)
+. .....+++|++|+...- ++...|..+... .+|+.+++.+..
T Consensus 71 ~~~~~~~~~~~~g~yVrV~G~-l~~f~g~~qi~~---~~ir~v~d~Nei 115 (132)
T 3kdf_D 71 DDTSSENTVVPPETYVKVAGH-LRSFQNKKSLVA---FKIMPLEDMNEF 115 (132)
T ss_dssp -------CCCCTTCEEEEEEE-EEEETTEEEEEE---EEEEECSSTHHH
T ss_pred CCcccccccccCCCEEEEEEE-EEeECCEEEEEE---EEEEEcCCccHH
Confidence 21 11356899999988764 555566554322 467777665543
No 40
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=74.27 E-value=40 Score=31.90 Aligned_cols=81 Identities=11% Similarity=0.024 Sum_probs=52.9
Q ss_pred ceEeeEEEEEEeeeeCCCCeEEEEEEcCCCCCCCCCCCCCCcccCCCCCCcccCCCCCccccccCCCcceEEEEEecccc
Q 012401 168 RYFDLVCKVFHVSYDDSKGLWMLFVWDGTDVPPLSIPGKLEDEEHNPLPLHIESSPLDLETLRNFFPVGTVLRVSTDRSY 247 (464)
Q Consensus 168 ~f~Dlv~qVv~v~~~~~~~~~~L~VwDgT~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~p~~G~vl~V~~~~~~ 247 (464)
..+.+++.|.++. . ....+.+.+-|+|+. .|.+.+|...
T Consensus 72 ~~V~ivG~V~~i~-~-~~~~~~~~L~D~TG~---------------------------------------~I~~k~W~~~ 110 (270)
T 2pi2_A 72 SQVTIVGIIRHAE-K-APTNIVYKIDDMTAA---------------------------------------PMDVRQWVDT 110 (270)
T ss_dssp SEEEEEEEEEEEE-E-CSSEEEEEEECSSSS---------------------------------------CEEEEEECC-
T ss_pred EEEEEEEEEEEEE-e-ccceEEEEEECCCCC---------------------------------------EEEEEEEcCc
Confidence 5789999999997 5 567888889998852 1234555433
Q ss_pred hh--hhccCCCCCcEEEEeCcEEEEeCcEEEEEEecCcceEEcCCCCh
Q 012401 248 EN--FGRYFTATGKWVRIRNMSCQVSSGMWHGLLQSSSKIRLFSDNDN 293 (464)
Q Consensus 248 ~~--~~~~~~k~G~wV~l~Nv~~k~~~g~leG~l~~~ski~~l~~~d~ 293 (464)
+. .....+++|++|++.- +++...|..+... .+|+.+.+.+.
T Consensus 111 ~~~~~~~~~~~~G~yVrV~G-~v~~f~g~~qi~i---~~ir~v~d~nE 154 (270)
T 2pi2_A 111 DDTSSENTVVPPETYVKVAG-HLRSFQNKKSLVA---FKIMPLEDMNE 154 (270)
T ss_dssp ------CCCCCTTCEEEEEE-EEEEETTEEEEEE---EEEEECSCTHH
T ss_pred CcccchhhcCCCCCEEEEEE-EEEecCCeeEEEE---EEEEecCCHhH
Confidence 22 1245689999998876 4555666654433 36777776655
No 41
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}
Probab=59.78 E-value=87 Score=27.19 Aligned_cols=29 Identities=21% Similarity=0.224 Sum_probs=22.7
Q ss_pred CceEeeEEEEEEeeeeCCCCeEEEEEEcCCC
Q 012401 167 HRYFDLVCKVFHVSYDDSKGLWMLFVWDGTD 197 (464)
Q Consensus 167 ~~f~Dlv~qVv~v~~~~~~~~~~L~VwDgT~ 197 (464)
=+++++++.|+++- + ...+..+-|=|||+
T Consensus 47 I~~V~IvGiVv~~~-~-~~~~~~ytIDD~TG 75 (159)
T 3kf6_A 47 IRWIQIVGYIAAID-I-YEGKHVLTVDDCSG 75 (159)
T ss_dssp ECEEEEEEEEEEEE-E-ETTEEEEEEECSSS
T ss_pred EEEEEEEEEEEEEE-E-eCCEEEEEEecCCC
Confidence 36789999999998 4 45677777888874
No 42
>3r8s_P 50S ribosomal protein L19; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* 2qba_P* 2qbc_P* 2qbe_P 2qbg_P 2qbi_P* 2qbk_P* 2qov_P 2qox_P 2qoz_P* 2qp1_P* ...
Probab=59.30 E-value=19 Score=29.72 Aligned_cols=42 Identities=17% Similarity=0.269 Sum_probs=28.7
Q ss_pred CCCCCCCCCCCEEEEee-------EEEEEEcCeeEEEeccC-ccEEEEEeC
Q 012401 70 DQLPRVLSPRDLILLKN-------VMIKKHQAELSAVFYKD-SSSFALFDG 112 (464)
Q Consensus 70 ~~LP~v~~~GDII~l~r-------vkv~~~~g~~~~~~~~~-~ss~~lf~~ 112 (464)
.++|.+ .+||+|.+|= =++|.|.|-+.+.-+.+ .++|.|=.-
T Consensus 14 ~~iP~f-~~GDtv~V~~~i~EG~keRiQ~F~GvvI~~~~~G~~~tftvRki 63 (114)
T 3r8s_P 14 QDVPSF-RPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKI 63 (114)
T ss_dssp SCCCCC-CTTCEEEEEEEEEETTEEEEEEEEEEEEEEECCGGGCEEEEEEE
T ss_pred cCCCcc-CCCCEEEEEEEEecCCceeeeeEEEEEEEEECCCCCeEEEEEEe
Confidence 579999 7999999973 24677877665555433 356776443
No 43
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}
Probab=59.07 E-value=13 Score=32.57 Aligned_cols=71 Identities=17% Similarity=0.189 Sum_probs=46.5
Q ss_pred CEEEEEEEEEEcCCccccCCCceEEEEEEEeCCCCCCCeEEEEecCCCC---CCCCCCCCCCEEEEeeEEEEEEcCeeEE
Q 012401 22 HKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSID---QLPRVLSPRDLILLKNVMIKKHQAELSA 98 (464)
Q Consensus 22 ~~vnviGVVvd~~~P~~trG~D~~~tl~I~D~S~~~~gl~v~iF~~~~~---~LP~v~~~GDII~l~rvkv~~~~g~~~~ 98 (464)
.+|.+.|+|+.... +.+ ...++|=|.|- .-|.|.++-+... .+.....+|++|+++. .|+.|+|+.++
T Consensus 48 ~~V~IvGiVv~~~~-~~~-----~~~ytIDD~TG--~~I~cv~w~~~~~~~~~~~~~l~~G~~VrV~G-~v~~fr~~rqI 118 (159)
T 3kf6_A 48 RWIQIVGYIAAIDI-YEG-----KHVLTVDDCSG--MVLRVVFIIQDDFSMSKRAISMSPGNVVCVFG-KINSFRSEVEL 118 (159)
T ss_dssp CEEEEEEEEEEEEE-ETT-----EEEEEEECSSS--CEEEEEEEGGGCHHHHHHHTTCCTTCEEEEEE-EEECSSSSCEE
T ss_pred EEEEEEEEEEEEEE-eCC-----EEEEEEecCCC--CeEEEEEEccCCCCcccccccCCCCCEEEEEE-EEEeeCCEEEE
Confidence 36899999999863 111 25666666652 2389998875411 1122236899999955 67889888776
Q ss_pred Eec
Q 012401 99 VFY 101 (464)
Q Consensus 99 ~~~ 101 (464)
...
T Consensus 119 ~~~ 121 (159)
T 3kf6_A 119 IAQ 121 (159)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
No 44
>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=56.72 E-value=18 Score=29.10 Aligned_cols=43 Identities=12% Similarity=0.128 Sum_probs=27.2
Q ss_pred CCCCCCCCCEEEEeeE------EEEEEcCeeEEEeccC-ccEEEEEeCCCC
Q 012401 72 LPRVLSPRDLILLKNV------MIKKHQAELSAVFYKD-SSSFALFDGNSG 115 (464)
Q Consensus 72 LP~v~~~GDII~l~rv------kv~~~~g~~~~~~~~~-~ss~~lf~~~~~ 115 (464)
+|.+ .+||+|.+|-- ++|.|.|-+.+.-+.+ .++|.|=+-..+
T Consensus 1 iP~f-~~GDtv~V~~~i~g~k~R~q~F~GvvI~~~~~G~~~tftvRki~~g 50 (98)
T 2ftc_K 1 IPEF-YVGSILRVTTADPYASGKISQFLGICIQRSGRGLGATFILRNVIEG 50 (98)
T ss_pred CCcc-CCCCEEEEEEEECCCceEeeeEEEEEEEEECCCCCcEEEEEEeccC
Confidence 5888 79999999821 2466766655554433 356776554443
No 45
>1miu_A BRCA2, breast cancer type 2 susceptibility protein; tumor suppressor, breast cancer susceptibility, DNA-binding; 3.10A {Mus musculus} SCOP: a.170.1.1 a.171.1.1 b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1iyj_B 1mje_A
Probab=54.50 E-value=31 Score=37.46 Aligned_cols=72 Identities=21% Similarity=0.313 Sum_probs=50.7
Q ss_pred eehhhhhh----ccCCEEEEEEEEEEcCCccccCCCceEEEEEEEeCCCCCCCeEEEEecCCCCCCCCCCCCCCEEEEee
Q 012401 11 VRIKELAM----HVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILLKN 86 (464)
Q Consensus 11 ~~i~d~~~----~~~~~vnviGVVvd~~~P~~trG~D~~~tl~I~D~S~~~~gl~v~iF~~~~~~LP~v~~~GDII~l~r 86 (464)
+++.++.. ....-|+++|+|+...... | ..-.+-|.|.+..- +.|+++..-.++ + .+|.+|-+.|
T Consensus 597 ~~~~~l~~~~f~p~~~EvDivG~Vv~v~~~~---~--~~~~vylsD~~~nl--l~Ikf~~~l~eD---~-~~~~~va~sN 665 (738)
T 1miu_A 597 LHFSRLSDPAFQPPCSEVDVVGVVVSVVKPI---G--LAPLVYLSDECLNL--LVVKFGIDLNED---I-KPRVLIAASN 665 (738)
T ss_dssp CCSGGGGSSSCCTTTTEEEEEEEEEEEECCT---T--SCCEEEEECSSSCE--EEEEESSCCCSC---C-CSSCEEEEEE
T ss_pred eeHHHhcCccccCCCCceeEEEEEEEEcccC---c--ccceEEEEcCCCcE--EEEEEecCchhh---C-ccccEEEEee
Confidence 34455543 3567799999999996532 1 12256689998743 777777765555 6 6999999999
Q ss_pred EEEEEEc
Q 012401 87 VMIKKHQ 93 (464)
Q Consensus 87 vkv~~~~ 93 (464)
++.+...
T Consensus 666 L~~r~~~ 672 (738)
T 1miu_A 666 LQCQPES 672 (738)
T ss_dssp EECCSCC
T ss_pred eEeeccc
Confidence 9998654
No 46
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=51.11 E-value=20 Score=40.66 Aligned_cols=85 Identities=15% Similarity=0.298 Sum_probs=60.4
Q ss_pred ceeehhhhhhccCCEEEEEEEEEEcCCccccCCCceEEEEEEEeCCCCCCCeEEEEecCCCCC---CCCCCCCCCEEEEe
Q 012401 9 GIVRIKELAMHVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQ---LPRVLSPRDLILLK 85 (464)
Q Consensus 9 ~y~~i~d~~~~~~~~vnviGVVvd~~~P~~trG~D~~~tl~I~D~S~~~~gl~v~iF~~~~~~---LP~v~~~GDII~l~ 85 (464)
..++|.++.... ..|-+-|-|.+... +.+|......+|.|+|-+. +|.|+.|.++.+. +-.+ ..|+-|+++
T Consensus 6 ~~~~~~~~~~~~-~~~~~~g~v~~~~~-~~~~~~~~~~~~~~td~~~---~~~~k~f~~~~~~~~~~~~~-~~g~~~~~~ 79 (1041)
T 3f2b_A 6 PVRRLETIVEEE-RRVVVQGYVFDAEV-SELKSGRTLLTMKITDYTN---SILVKMFSRDKEDAELMSGV-KKGMWVKVR 79 (1041)
T ss_dssp -CBCGGGCCSCE-EEEEEEEEEEEEEE-EECTTSCEEEEEEEECSSC---EEEEEEECSSHHHHHHHHTC-CTTCEEEEE
T ss_pred CcccHHHhhccc-ceEEEEEEEEEEEE-EEccCCCEEEEEEEEeCCC---CEEEEEeecccchHHHHhcC-CCCCEEEEE
Confidence 356788887443 35889999988653 4455556889999999854 4999999865443 3456 689999997
Q ss_pred -eEEEEEEcCeeEEE
Q 012401 86 -NVMIKKHQAELSAV 99 (464)
Q Consensus 86 -rvkv~~~~g~~~~~ 99 (464)
++....|.+++...
T Consensus 80 g~~~~d~~~~~~~~~ 94 (1041)
T 3f2b_A 80 GSVQNDTFVRDLVII 94 (1041)
T ss_dssp EEEEEETTTTEEEEE
T ss_pred EEEEeccCCcceEEE
Confidence 56777777765433
No 47
>3v2d_T 50S ribosomal protein L19; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T 2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T 2wro_T 2wrr_T 2x9s_T 2x9u_T ...
Probab=48.10 E-value=33 Score=29.48 Aligned_cols=41 Identities=15% Similarity=0.288 Sum_probs=27.5
Q ss_pred CCCCCCCCCCCEEEEeeE-------EEEEEcCeeEEEeccC-ccEEEEEe
Q 012401 70 DQLPRVLSPRDLILLKNV-------MIKKHQAELSAVFYKD-SSSFALFD 111 (464)
Q Consensus 70 ~~LP~v~~~GDII~l~rv-------kv~~~~g~~~~~~~~~-~ss~~lf~ 111 (464)
.++|.+ .+||+|.+|=- ++|.|.|-+.+.-+.+ .++|.|=.
T Consensus 17 ~diP~F-~~GDtV~V~~~i~EG~keRiQ~FeGvVI~rr~~Gl~~tFtVRk 65 (146)
T 3v2d_T 17 TDLPEF-RPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVRK 65 (146)
T ss_dssp CCCCCC-CTTCEEEEEEEEECSSCEEEEEEEEEEEEEECCGGGCEEEEEE
T ss_pred ccCCCc-CCCCEEEEEEEEccCCceeeeeEEEEEEEEECCCCCeEEEEEE
Confidence 579999 79999999743 2467777655554433 35677643
No 48
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=42.85 E-value=58 Score=36.96 Aligned_cols=40 Identities=23% Similarity=0.170 Sum_probs=28.2
Q ss_pred ccccccc-CCceEeeEEEEEEeee-eCCC--CeEEEEEEcCCCC
Q 012401 159 LSLKDIS-EHRYFDLVCKVFHVSY-DDSK--GLWMLFVWDGTDV 198 (464)
Q Consensus 159 ~~Lkdi~-~~~f~Dlv~qVv~v~~-~~~~--~~~~L~VwDgT~~ 198 (464)
..|++|. +...+-+.++|.++-. +..+ .-.+++|+|||+.
T Consensus 8 ~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~td~~~~ 51 (1041)
T 3f2b_A 8 RRLETIVEEERRVVVQGYVFDAEVSELKSGRTLLTMKITDYTNS 51 (1041)
T ss_dssp BCGGGCCSCEEEEEEEEEEEEEEEEECTTSCEEEEEEEECSSCE
T ss_pred ccHHHhhcccceEEEEEEEEEEEEEEccCCCEEEEEEEEeCCCC
Confidence 5788886 4566778888987763 2223 3568899999854
No 49
>3mxn_A RECQ-mediated genome instability protein 1; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_A 3nbh_A
Probab=42.60 E-value=35 Score=29.79 Aligned_cols=70 Identities=16% Similarity=0.169 Sum_probs=50.1
Q ss_pred ccCCCccccHHHHhh-CCCCCceeEEEEEEEeecCCCccccccCCCCeEEEEEEEEeCCCceEEEEEeccccccccC
Q 012401 327 DWVNVASVTLMKIAT-QLQGNVRCCCIVRVVSIHPFQAEHYSSPNGSSEYTMKLTLEDPTARIHALLCGKEWVKFFG 402 (464)
Q Consensus 327 ~~~~~p~ttL~dIL~-~p~v~~kfr~~VRVV~~~P~~~edf~~~~~~w~~rf~L~lED~t~ri~~~v~~~da~~f~~ 402 (464)
+-.+-|||=|.-++. .|+.+..| +|-+|.=.-...+..+.| .|.+...+.|.|+.++|.+.++=-..+.|
T Consensus 17 ~l~s~PFtYL~~l~~~~~~~~~~~----kVKafI~tl~~~l~~~~~--~W~l~a~IsDGS~~LdV~f~~~VLt~lIG 87 (157)
T 3mxn_A 17 DLYSPPFVYLSVLMASKPKEVTTV----KVKAFIVTLTGNLSSSGG--IWSITAKVSDGTAYLDVDFVDEILTSLIG 87 (157)
T ss_dssp HHHCSSCCCHHHHHHTCCSSCEEE----EEEEEEEEECSCCBCGGG--SCBCEEEEECSSCEEEEEECHHHHHHHHS
T ss_pred ccCCCchHHHHHHHhhccCCceEE----EEEEEEEEeccceeecCC--EEEEEEEEeCCceeEEEEeeHHHHHhhhC
Confidence 445789999999985 45544444 444444445555555667 78999999999999999887766666664
No 50
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=31.28 E-value=35 Score=39.41 Aligned_cols=76 Identities=22% Similarity=0.259 Sum_probs=36.7
Q ss_pred eehhhhhh-----ccCCEEEEEEEEEEcCCccccCCCceEEEEEEEeCCCCCCCeEEEEecCCCCCCCCCCCCCCEEEEe
Q 012401 11 VRIKELAM-----HVKHKVNLLGVVLEFSIPRKSQGTDYVCVLKIVDDSQQSPELLVNIFTSSIDQLPRVLSPRDLILLK 85 (464)
Q Consensus 11 ~~i~d~~~-----~~~~~vnviGVVvd~~~P~~trG~D~~~tl~I~D~S~~~~gl~v~iF~~~~~~LP~v~~~GDII~l~ 85 (464)
+++.++.. ..|+.|.+.|+|+..+.|. |+..+-++-++|-|.+-. +.|.+|.+..+........|.+++++
T Consensus 1027 ~~~~~l~~~~~~~~~g~~v~v~G~v~~~~~~~-Tk~G~~maf~tleD~tg~---~evvvf~~~~~~~~~~l~~~~~~~v~ 1102 (1220)
T 2hpi_A 1027 CTIEELSEFVRELPGKPKVLLSGMVEEVVRKP-TRSGGMMARFTLSDETGA---LEVVVFGRAYEGVSPKLKEDIPLLVL 1102 (1220)
T ss_dssp SCTTTHHHHHSSSSSSCEEEEEEEECCC-------------CEEEEETTEE---EEEC-------------CTTCEEEEE
T ss_pred ccHHHHhhhhhhccCCCeEEEEEEEEEEEEee-cCCCCeEEEEEEEECCCC---EEEEEcHHHHHHHHHHhccCCEEEEE
Confidence 35566542 3567799999999988764 554577899999998753 99999998878777765666676664
Q ss_pred eEEEEE
Q 012401 86 NVMIKK 91 (464)
Q Consensus 86 rvkv~~ 91 (464)
.+++.
T Consensus 1103 -G~v~~ 1107 (1220)
T 2hpi_A 1103 -AEVEK 1107 (1220)
T ss_dssp -EEEC-
T ss_pred -EEEEE
Confidence 46653
No 51
>2zjr_M 50S ribosomal protein L19; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.6 PDB: 1nwx_N* 1nwy_N* 1sm1_N* 1xbp_N* 2zjp_M* 2zjq_M 1nkw_N 3cf5_M* 3dll_M* 3pio_M* 3pip_M* 1pnu_N 1pny_N 1vor_Q 1vou_Q 1vow_Q 1voy_Q 1vp0_Q
Probab=27.06 E-value=48 Score=29.11 Aligned_cols=42 Identities=21% Similarity=0.251 Sum_probs=28.8
Q ss_pred CCCCCCCCCCCEEEEee-E------EEEEEcCeeEEEeccC-ccEEEEEeC
Q 012401 70 DQLPRVLSPRDLILLKN-V------MIKKHQAELSAVFYKD-SSSFALFDG 112 (464)
Q Consensus 70 ~~LP~v~~~GDII~l~r-v------kv~~~~g~~~~~~~~~-~ss~~lf~~ 112 (464)
.++|.+ .+||+|++|= + ++|.|.|-+.+.-+.+ .++|.|=+-
T Consensus 22 ~diP~F-r~GDtV~V~vkI~EG~KeRiQ~FeGVVIarr~~Gl~sTFTVRki 71 (166)
T 2zjr_M 22 RQLPDF-RPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKSFTVRKI 71 (166)
T ss_dssp CCCCCC-SSSEEEEEECCTTSSSCCCCEEEECCEEECCCCGGGCEEEEEEE
T ss_pred cCCCCc-CCCCEEEEEEEEecCCeeeecceEEEEEEEeCCCCCcEEEEEEe
Confidence 579999 7999999982 2 3578888765555433 356777443
No 52
>3afp_A Single-stranded DNA-binding protein; OB-fold, quaternary structure and stability, changes on oligomerisation, water-bridges, DNA damage; 2.05A {Mycobacterium leprae} PDB: 3afq_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A 1x3e_A 1x3f_A 1x3g_A 3a5u_A*
Probab=26.49 E-value=65 Score=28.18 Aligned_cols=73 Identities=10% Similarity=0.149 Sum_probs=48.8
Q ss_pred CEEEEEEEEEEcCCccccCCCceEEEEEEEe-CCCC-----------CCCeEEEEecCCCCCCCCCCCCCCEEEEe-eEE
Q 012401 22 HKVNLLGVVLEFSIPRKSQGTDYVCVLKIVD-DSQQ-----------SPELLVNIFTSSIDQLPRVLSPRDLILLK-NVM 88 (464)
Q Consensus 22 ~~vnviGVVvd~~~P~~trG~D~~~tl~I~D-~S~~-----------~~gl~v~iF~~~~~~LP~v~~~GDII~l~-rvk 88 (464)
.+|.|+|-|..--..+.|....-.++|+|.= .... ..-+.|.+|.+..+.+-.-...||-|.+. +++
T Consensus 5 N~V~LiG~L~~dPelr~t~~G~~va~f~lAv~~~~~~~~~Ge~~d~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~VeGrL~ 84 (168)
T 3afp_A 5 TTITIVGNLTADPELRFTSSGAAVVNFTVASTPRIYDRQSGEWKDGEALFLRCNIWREAAENVAESLTRGARVIVTGRLK 84 (168)
T ss_dssp CEEEEEEEESSSCCCEECTTSCEEEEEEEEECC--------CCCCCCCEEEEEEEEHHHHHHHHHHCCTTCEEEEEEEEE
T ss_pred CEEEEEEEECCCCEEEECCCCCEEEEEEEEEccccccccCCcEecCCcEEEEEEEehHHHHHHHHhCCCCCEEEEEEEEE
Confidence 4788999988654445565446788999963 3221 12399999987555554423679988777 889
Q ss_pred EEEEcC
Q 012401 89 IKKHQA 94 (464)
Q Consensus 89 v~~~~g 94 (464)
...|.+
T Consensus 85 ~~~~~d 90 (168)
T 3afp_A 85 QRSFET 90 (168)
T ss_dssp EEEEC-
T ss_pred eeeEEC
Confidence 999974
Done!